Query 010324
Match_columns 513
No_of_seqs 959 out of 3629
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 23:12:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0275 Conserved WD40 repeat- 100.0 7.2E-99 2E-103 633.0 35.6 508 1-513 1-508 (508)
2 KOG0293 WD40 repeat-containing 100.0 6.9E-72 1.5E-76 483.9 35.4 485 4-513 14-512 (519)
3 KOG0271 Notchless-like WD40 re 100.0 8.4E-51 1.8E-55 349.7 26.1 291 203-513 106-438 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-50 3.8E-55 352.2 21.1 285 210-513 172-459 (459)
5 KOG0271 Notchless-like WD40 re 100.0 4.2E-49 9E-54 339.3 26.3 309 184-512 129-479 (480)
6 KOG0273 Beta-transducin family 100.0 2E-47 4.2E-52 337.6 28.7 297 200-512 167-480 (524)
7 KOG0286 G-protein beta subunit 100.0 2.7E-46 5.9E-51 311.2 32.8 288 206-512 49-343 (343)
8 KOG0263 Transcription initiati 100.0 4.7E-41 1E-45 316.1 33.9 260 200-513 366-648 (707)
9 KOG0279 G protein beta subunit 100.0 1.5E-40 3.3E-45 275.3 31.0 285 210-512 12-311 (315)
10 KOG0282 mRNA splicing factor [ 100.0 1.7E-42 3.7E-47 307.5 19.8 300 195-512 197-503 (503)
11 KOG0295 WD40 repeat-containing 100.0 4E-41 8.7E-46 288.5 26.8 283 211-512 106-404 (406)
12 KOG0265 U5 snRNP-specific prot 100.0 8.3E-41 1.8E-45 279.6 27.9 284 210-510 44-334 (338)
13 KOG0272 U4/U6 small nuclear ri 100.0 7.1E-42 1.5E-46 298.5 20.7 265 186-470 191-458 (459)
14 KOG0315 G-protein beta subunit 100.0 4.6E-40 1E-44 267.9 28.5 270 226-513 11-287 (311)
15 KOG0284 Polyadenylation factor 100.0 4.8E-41 1E-45 292.0 21.6 295 199-512 82-378 (464)
16 KOG0318 WD40 repeat stress pro 100.0 8.7E-39 1.9E-43 286.6 33.3 329 174-512 152-558 (603)
17 KOG0296 Angio-associated migra 100.0 8.9E-39 1.9E-43 274.3 30.2 292 206-512 58-396 (399)
18 KOG0315 G-protein beta subunit 100.0 1.6E-38 3.5E-43 258.9 29.4 296 185-493 13-309 (311)
19 KOG0645 WD40 repeat protein [G 100.0 4.7E-38 1E-42 259.4 31.7 284 206-512 8-309 (312)
20 KOG0285 Pleiotropic regulator 100.0 7.8E-39 1.7E-43 273.7 25.7 290 200-512 139-437 (460)
21 KOG0273 Beta-transducin family 100.0 5.1E-38 1.1E-42 278.1 31.1 278 213-512 235-521 (524)
22 KOG0266 WD40 repeat-containing 100.0 5E-38 1.1E-42 304.4 34.1 296 205-513 151-453 (456)
23 cd00200 WD40 WD40 domain, foun 100.0 9E-37 1.9E-41 282.3 36.8 286 206-512 3-289 (289)
24 KOG0640 mRNA cleavage stimulat 100.0 5.9E-37 1.3E-41 257.5 30.1 297 210-512 109-424 (430)
25 KOG0316 Conserved WD40 repeat- 100.0 1.9E-37 4.1E-42 250.6 25.1 287 201-511 6-296 (307)
26 KOG0279 G protein beta subunit 100.0 2.9E-37 6.3E-42 255.8 26.7 254 199-472 50-313 (315)
27 KOG0286 G-protein beta subunit 100.0 5.7E-36 1.2E-40 249.7 29.2 274 183-470 68-343 (343)
28 KOG0291 WD40-repeat-containing 100.0 8.3E-36 1.8E-40 278.4 33.4 299 199-513 131-507 (893)
29 PLN00181 protein SPA1-RELATED; 100.0 5.4E-35 1.2E-39 304.7 38.4 287 211-512 481-791 (793)
30 KOG0284 Polyadenylation factor 100.0 2.8E-37 6.1E-42 268.7 16.3 270 184-472 110-380 (464)
31 KOG0291 WD40-repeat-containing 100.0 7.9E-35 1.7E-39 271.9 32.8 282 212-513 264-549 (893)
32 KOG0278 Serine/threonine kinas 100.0 2E-36 4.4E-41 246.8 16.9 279 210-512 11-295 (334)
33 KOG0643 Translation initiation 100.0 7.6E-35 1.6E-39 240.0 23.1 280 211-511 8-314 (327)
34 KOG0292 Vesicle coat complex C 100.0 1.3E-34 2.7E-39 274.8 27.3 289 211-511 7-318 (1202)
35 KOG0318 WD40 repeat stress pro 100.0 2.6E-33 5.6E-38 251.6 34.2 289 208-512 54-348 (603)
36 KOG0276 Vesicle coat complex C 100.0 1.8E-34 4E-39 263.9 25.3 281 211-510 11-295 (794)
37 KOG0263 Transcription initiati 100.0 1E-34 2.2E-39 273.5 23.9 203 209-428 447-649 (707)
38 KOG0283 WD40 repeat-containing 100.0 2.4E-34 5.2E-39 273.3 26.6 265 202-472 256-576 (712)
39 KOG0319 WD40-repeat-containing 100.0 2.3E-34 5E-39 268.4 25.9 318 183-513 118-576 (775)
40 KOG0288 WD40 repeat protein Ti 100.0 6.1E-35 1.3E-39 254.6 18.9 298 195-512 158-459 (459)
41 KOG0285 Pleiotropic regulator 100.0 3.6E-34 7.8E-39 245.3 21.9 247 253-512 140-387 (460)
42 KOG1446 Histone H3 (Lys4) meth 100.0 2.6E-32 5.7E-37 231.1 33.0 284 212-513 13-302 (311)
43 KOG1407 WD40 repeat protein [F 100.0 6E-33 1.3E-37 228.1 27.9 274 211-505 18-293 (313)
44 KOG0281 Beta-TrCP (transducin 100.0 4.6E-35 9.9E-40 249.8 15.7 267 212-512 196-475 (499)
45 KOG0313 Microtubule binding pr 100.0 2.1E-33 4.6E-38 242.5 25.6 288 199-512 93-416 (423)
46 KOG0319 WD40-repeat-containing 100.0 1.6E-33 3.4E-38 262.9 25.7 291 200-512 311-617 (775)
47 KOG0295 WD40 repeat-containing 100.0 3.1E-33 6.8E-38 240.1 23.1 380 6-471 9-405 (406)
48 KOG0316 Conserved WD40 repeat- 100.0 3.2E-33 7E-38 226.2 21.6 243 259-513 12-256 (307)
49 KOG0306 WD40-repeat-containing 100.0 1.6E-32 3.4E-37 256.5 29.1 319 174-512 69-578 (888)
50 KOG0266 WD40 repeat-containing 100.0 3.1E-32 6.8E-37 264.1 30.1 242 263-513 158-408 (456)
51 KOG0277 Peroxisomal targeting 100.0 1E-32 2.3E-37 225.8 22.0 282 217-513 12-308 (311)
52 KOG0645 WD40 repeat protein [G 100.0 1E-31 2.2E-36 222.1 28.0 245 258-512 8-259 (312)
53 KOG0265 U5 snRNP-specific prot 100.0 3.3E-32 7.2E-37 228.2 24.6 247 256-513 39-295 (338)
54 KOG0306 WD40-repeat-containing 100.0 4.7E-32 1E-36 253.3 27.7 280 210-512 370-662 (888)
55 KOG0276 Vesicle coat complex C 100.0 1.3E-32 2.9E-37 251.9 23.5 244 259-512 8-255 (794)
56 KOG0772 Uncharacterized conser 100.0 2.8E-32 6.2E-37 244.3 24.4 302 199-511 154-484 (641)
57 KOG0289 mRNA splicing factor [ 100.0 1.6E-30 3.4E-35 228.4 34.8 282 212-512 218-504 (506)
58 KOG0305 Anaphase promoting com 100.0 2.1E-31 4.6E-36 247.0 27.8 273 218-513 182-460 (484)
59 KOG0973 Histone transcription 100.0 2.6E-31 5.6E-36 259.2 28.9 296 211-511 11-352 (942)
60 PTZ00421 coronin; Provisional 100.0 2E-30 4.3E-35 250.1 33.1 272 214-495 21-314 (493)
61 KOG0282 mRNA splicing factor [ 100.0 9.1E-33 2E-37 245.9 15.2 247 255-512 205-460 (503)
62 cd00200 WD40 WD40 domain, foun 100.0 2.5E-30 5.5E-35 239.0 32.0 244 259-513 4-248 (289)
63 PLN00181 protein SPA1-RELATED; 100.0 2.2E-30 4.7E-35 270.3 33.3 263 234-513 457-737 (793)
64 KOG0292 Vesicle coat complex C 100.0 1.3E-31 2.8E-36 254.5 21.4 244 262-513 7-279 (1202)
65 KOG0310 Conserved WD40 repeat- 100.0 2E-30 4.4E-35 231.4 27.4 275 213-510 26-305 (487)
66 KOG0647 mRNA export protein (c 100.0 4E-30 8.6E-35 215.9 25.8 276 208-502 22-311 (347)
67 KOG0296 Angio-associated migra 100.0 4.6E-30 1E-34 220.9 26.5 265 185-472 79-398 (399)
68 KOG0299 U3 snoRNP-associated p 100.0 4.8E-30 1E-34 227.3 27.0 290 210-511 139-453 (479)
69 KOG0268 Sof1-like rRNA process 100.0 1.1E-31 2.4E-36 230.5 15.4 285 201-513 55-344 (433)
70 KOG1446 Histone H3 (Lys4) meth 100.0 3.3E-29 7.2E-34 212.4 29.7 246 258-513 8-261 (311)
71 KOG1273 WD40 repeat protein [G 100.0 4.4E-30 9.6E-35 216.8 24.1 293 199-512 12-320 (405)
72 KOG0281 Beta-TrCP (transducin 100.0 1.6E-31 3.5E-36 228.2 15.6 263 186-477 211-482 (499)
73 KOG0274 Cdc4 and related F-box 100.0 8.7E-30 1.9E-34 245.7 28.8 273 211-513 206-481 (537)
74 KOG1036 Mitotic spindle checkp 100.0 3.4E-29 7.3E-34 211.2 27.7 277 207-504 7-294 (323)
75 KOG0278 Serine/threonine kinas 100.0 1.1E-30 2.4E-35 213.3 17.9 256 198-477 45-302 (334)
76 KOG0283 WD40 repeat-containing 100.0 4.5E-30 9.8E-35 244.4 23.8 240 262-512 265-574 (712)
77 KOG0294 WD40 repeat-containing 100.0 3E-29 6.4E-34 211.9 25.9 270 227-513 3-280 (362)
78 KOG0641 WD40 repeat protein [G 100.0 1.3E-27 2.8E-32 192.7 33.4 295 211-512 30-347 (350)
79 KOG0647 mRNA export protein (c 100.0 2E-29 4.3E-34 211.7 23.4 240 263-513 26-280 (347)
80 KOG0277 Peroxisomal targeting 100.0 8.4E-30 1.8E-34 208.8 20.0 253 203-471 50-308 (311)
81 PTZ00420 coronin; Provisional 100.0 3.9E-28 8.4E-33 235.1 33.5 247 231-496 50-318 (568)
82 KOG0301 Phospholipase A2-activ 100.0 9.4E-29 2E-33 229.6 27.3 280 203-512 5-286 (745)
83 KOG2096 WD40 repeat protein [G 100.0 3.5E-28 7.6E-33 205.6 26.6 292 211-511 84-399 (420)
84 PTZ00420 coronin; Provisional 100.0 7.2E-28 1.6E-32 233.2 32.4 248 196-454 58-318 (568)
85 PTZ00421 coronin; Provisional 100.0 9.4E-28 2E-32 231.6 33.0 234 210-453 72-314 (493)
86 KOG1407 WD40 repeat protein [F 100.0 1E-28 2.2E-33 203.3 21.9 242 258-510 14-257 (313)
87 KOG0305 Anaphase promoting com 100.0 2E-28 4.3E-33 227.3 26.2 259 196-474 201-463 (484)
88 KOG0264 Nucleosome remodeling 100.0 5.2E-29 1.1E-33 220.8 21.2 275 203-513 114-403 (422)
89 KOG0274 Cdc4 and related F-box 100.0 2.6E-28 5.7E-33 235.5 27.2 262 194-483 230-493 (537)
90 KOG4283 Transcription-coupled 100.0 4.2E-28 9.1E-33 203.0 24.6 297 211-513 41-364 (397)
91 KOG0643 Translation initiation 100.0 3.7E-28 8E-33 200.6 23.9 264 190-473 30-318 (327)
92 KOG1274 WD40 repeat protein [G 100.0 1.3E-27 2.8E-32 228.9 30.9 287 208-511 8-297 (933)
93 KOG0973 Histone transcription 100.0 1.4E-28 3.1E-33 240.2 23.8 255 211-474 67-357 (942)
94 KOG0293 WD40 repeat-containing 100.0 2.5E-28 5.5E-33 213.3 22.1 252 204-473 261-514 (519)
95 KOG2055 WD40 repeat protein [G 100.0 1.4E-27 3E-32 211.7 26.6 286 213-512 213-510 (514)
96 KOG0313 Microtubule binding pr 100.0 3.9E-28 8.4E-33 210.1 21.8 241 263-513 104-375 (423)
97 KOG1332 Vesicle coat complex C 100.0 2E-28 4.3E-33 199.7 18.5 258 205-472 3-286 (299)
98 KOG0300 WD40 repeat-containing 100.0 2.8E-28 6.2E-33 206.1 19.9 281 211-512 146-474 (481)
99 KOG0289 mRNA splicing factor [ 100.0 1.3E-27 2.7E-32 210.3 24.5 259 197-471 246-505 (506)
100 KOG1408 WD40 repeat protein [F 100.0 9.3E-28 2E-32 223.4 24.9 298 211-512 367-711 (1080)
101 KOG0288 WD40 repeat protein Ti 100.0 3.3E-28 7.1E-33 212.7 19.8 264 188-469 193-458 (459)
102 KOG0275 Conserved WD40 repeat- 100.0 2.1E-28 4.6E-33 207.4 17.4 276 177-470 221-507 (508)
103 KOG1539 WD repeat protein [Gen 100.0 2.5E-26 5.3E-31 217.8 31.7 317 185-513 175-605 (910)
104 KOG0308 Conserved WD40 repeat- 100.0 6.8E-28 1.5E-32 222.2 20.0 281 218-512 29-325 (735)
105 KOG0294 WD40 repeat-containing 100.0 7.9E-27 1.7E-31 197.3 24.6 255 211-492 41-305 (362)
106 KOG0639 Transducin-like enhanc 100.0 1.2E-27 2.5E-32 214.2 20.6 286 210-512 416-702 (705)
107 KOG0772 Uncharacterized conser 100.0 1.2E-27 2.6E-32 214.8 20.6 263 249-513 152-444 (641)
108 KOG0310 Conserved WD40 repeat- 100.0 1.5E-27 3.3E-32 213.1 20.5 238 264-512 26-266 (487)
109 KOG0650 WD40 repeat nucleolar 100.0 5.7E-27 1.2E-31 214.2 22.7 290 198-511 386-732 (733)
110 KOG1036 Mitotic spindle checkp 100.0 2.3E-26 4.9E-31 194.2 24.4 237 263-513 12-261 (323)
111 KOG0640 mRNA cleavage stimulat 100.0 7.4E-27 1.6E-31 196.9 21.0 219 259-483 107-346 (430)
112 KOG0321 WD40 repeat-containing 100.0 7.1E-27 1.5E-31 215.1 22.7 289 219-512 55-389 (720)
113 KOG2445 Nuclear pore complex c 100.0 8.2E-26 1.8E-30 190.6 25.8 251 261-513 10-317 (361)
114 KOG0299 U3 snoRNP-associated p 100.0 2.3E-26 5E-31 204.0 22.3 240 262-512 140-408 (479)
115 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-24 2.3E-29 203.3 34.0 268 225-513 1-278 (300)
116 KOG0646 WD40 repeat protein [G 99.9 4.5E-26 9.8E-31 202.6 22.8 252 226-495 51-330 (476)
117 KOG0646 WD40 repeat protein [G 99.9 4.9E-26 1.1E-30 202.4 23.0 269 231-513 13-306 (476)
118 KOG0268 Sof1-like rRNA process 99.9 1.9E-27 4.2E-32 204.5 13.5 239 258-513 60-301 (433)
119 KOG0641 WD40 repeat protein [G 99.9 7.4E-25 1.6E-29 176.8 26.9 250 210-472 86-349 (350)
120 KOG2048 WD40 repeat protein [G 99.9 6.5E-25 1.4E-29 203.8 29.8 282 212-510 24-315 (691)
121 KOG1332 Vesicle coat complex C 99.9 1.8E-26 3.9E-31 188.3 17.0 248 262-513 9-285 (299)
122 KOG4328 WD40 protein [Function 99.9 1.2E-25 2.5E-30 199.4 23.3 294 211-512 184-493 (498)
123 KOG2106 Uncharacterized conser 99.9 4.5E-24 9.7E-29 191.5 33.6 299 191-513 179-520 (626)
124 KOG0308 Conserved WD40 repeat- 99.9 2.8E-26 6E-31 211.7 18.5 290 205-513 66-392 (735)
125 KOG1539 WD repeat protein [Gen 99.9 9.8E-25 2.1E-29 207.0 28.7 295 196-512 228-646 (910)
126 KOG0300 WD40 repeat-containing 99.9 1.1E-25 2.5E-30 190.4 19.9 246 257-513 141-427 (481)
127 KOG0269 WD40 repeat-containing 99.9 9.7E-26 2.1E-30 212.2 19.4 286 213-509 39-335 (839)
128 KOG2106 Uncharacterized conser 99.9 9.5E-24 2.1E-28 189.4 31.1 299 193-512 135-475 (626)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2E-23 4.3E-28 194.7 34.8 280 195-494 14-300 (300)
130 KOG0269 WD40 repeat-containing 99.9 5.1E-26 1.1E-30 214.0 15.2 244 216-474 90-342 (839)
131 KOG1408 WD40 repeat protein [F 99.9 2.2E-24 4.7E-29 201.2 25.3 286 216-512 327-669 (1080)
132 KOG2445 Nuclear pore complex c 99.9 5.6E-24 1.2E-28 179.6 25.3 258 206-472 6-318 (361)
133 KOG0264 Nucleosome remodeling 99.9 1E-24 2.2E-29 193.7 18.7 220 207-430 172-406 (422)
134 KOG1538 Uncharacterized conser 99.9 3.6E-24 7.8E-29 198.3 22.9 274 215-512 14-291 (1081)
135 KOG1063 RNA polymerase II elon 99.9 3.8E-24 8.2E-29 199.1 23.0 303 205-512 184-600 (764)
136 KOG0270 WD40 repeat-containing 99.9 1.6E-24 3.4E-29 191.7 18.7 246 224-477 191-454 (463)
137 KOG2919 Guanine nucleotide-bin 99.9 1.2E-23 2.7E-28 178.7 22.4 281 217-505 53-361 (406)
138 KOG1034 Transcriptional repres 99.9 1.6E-23 3.6E-28 178.3 23.2 305 199-512 24-381 (385)
139 KOG0267 Microtubule severing p 99.9 1.5E-25 3.2E-30 209.3 10.8 255 225-505 4-259 (825)
140 KOG1274 WD40 repeat protein [G 99.9 3.4E-23 7.4E-28 198.9 26.1 242 262-513 11-261 (933)
141 KOG0301 Phospholipase A2-activ 99.9 2.6E-23 5.6E-28 193.7 24.1 232 211-472 55-288 (745)
142 KOG0267 Microtubule severing p 99.9 4.1E-25 8.9E-30 206.4 11.9 235 211-464 26-260 (825)
143 KOG4227 WD40 repeat protein [G 99.9 3.4E-23 7.4E-28 180.3 22.8 298 211-513 54-386 (609)
144 KOG0302 Ribosome Assembly prot 99.9 2.9E-23 6.2E-28 179.9 21.7 277 196-513 136-437 (440)
145 KOG4283 Transcription-coupled 99.9 5.9E-23 1.3E-27 172.3 22.5 206 263-475 42-279 (397)
146 KOG1009 Chromatin assembly com 99.9 7.2E-23 1.6E-27 179.2 23.4 298 208-510 8-368 (434)
147 KOG1063 RNA polymerase II elon 99.9 6.9E-23 1.5E-27 190.8 23.7 297 210-512 264-646 (764)
148 KOG2055 WD40 repeat protein [G 99.9 9.2E-23 2E-27 181.3 22.9 260 202-472 247-512 (514)
149 KOG1445 Tumor-specific antigen 99.9 2.7E-23 5.9E-28 191.5 17.6 136 209-348 75-212 (1012)
150 KOG4378 Nuclear protein COP1 [ 99.9 9.8E-23 2.1E-27 182.6 20.3 264 216-496 37-305 (673)
151 KOG2048 WD40 repeat protein [G 99.9 9.1E-22 2E-26 183.1 27.3 242 263-511 24-272 (691)
152 KOG0639 Transducin-like enhanc 99.9 3.3E-23 7.1E-28 185.9 17.2 238 213-471 465-703 (705)
153 KOG0307 Vesicle coat complex C 99.9 2.1E-23 4.5E-28 205.3 14.8 283 218-512 11-325 (1049)
154 KOG1334 WD40 repeat protein [G 99.9 7.6E-23 1.6E-27 183.1 15.2 294 211-513 140-465 (559)
155 KOG1188 WD40 repeat protein [G 99.9 5.3E-22 1.1E-26 170.1 18.4 275 226-512 41-344 (376)
156 KOG0322 G-protein beta subunit 99.9 3.6E-22 7.9E-27 165.1 16.3 296 201-512 3-321 (323)
157 KOG0302 Ribosome Assembly prot 99.9 5E-22 1.1E-26 172.3 17.9 206 305-513 149-377 (440)
158 KOG0650 WD40 repeat nucleolar 99.9 9.2E-22 2E-26 180.4 20.0 252 246-511 382-677 (733)
159 KOG4328 WD40 protein [Function 99.9 1.5E-21 3.2E-26 173.6 19.6 244 262-513 184-449 (498)
160 KOG2096 WD40 repeat protein [G 99.9 1.2E-20 2.5E-25 160.3 23.1 242 259-511 81-357 (420)
161 KOG4378 Nuclear protein COP1 [ 99.9 1.9E-21 4.2E-26 174.4 18.9 270 227-512 5-278 (673)
162 KOG0642 Cell-cycle nuclear pro 99.9 3.6E-22 7.7E-27 182.1 14.2 256 211-512 292-559 (577)
163 KOG1273 WD40 repeat protein [G 99.9 5.8E-21 1.3E-25 162.0 19.7 196 310-512 26-224 (405)
164 KOG1007 WD repeat protein TSSC 99.9 1E-20 2.2E-25 158.6 20.6 281 206-510 56-357 (370)
165 KOG0270 WD40 repeat-containing 99.9 4.6E-21 1E-25 169.9 18.9 238 265-512 174-447 (463)
166 KOG2919 Guanine nucleotide-bin 99.9 1.8E-20 3.8E-25 159.6 20.8 244 267-513 52-326 (406)
167 KOG1963 WD40 repeat protein [G 99.9 1.7E-19 3.6E-24 173.4 29.1 301 203-513 195-537 (792)
168 KOG0307 Vesicle coat complex C 99.9 2E-21 4.3E-26 191.5 16.2 254 211-475 62-330 (1049)
169 KOG1034 Transcriptional repres 99.9 5.5E-21 1.2E-25 163.1 16.6 250 211-472 87-383 (385)
170 KOG1538 Uncharacterized conser 99.9 1.5E-20 3.3E-25 174.5 20.6 267 175-472 19-293 (1081)
171 KOG0303 Actin-binding protein 99.9 4.6E-20 9.9E-25 161.2 21.5 207 259-475 76-297 (472)
172 COG2319 FOG: WD40 repeat [Gene 99.9 2.3E-18 4.9E-23 169.1 36.5 283 209-512 61-357 (466)
173 KOG0303 Actin-binding protein 99.9 2.4E-20 5.2E-25 162.9 19.2 213 211-431 79-297 (472)
174 KOG0321 WD40 repeat-containing 99.9 3.5E-20 7.7E-25 171.4 20.0 253 209-474 96-393 (720)
175 PRK11028 6-phosphogluconolacto 99.9 1.8E-18 3.9E-23 162.9 31.8 271 229-512 6-302 (330)
176 KOG1310 WD40 repeat protein [G 99.9 7.5E-20 1.6E-24 166.3 20.9 208 211-428 48-303 (758)
177 KOG1517 Guanine nucleotide bin 99.9 1.7E-19 3.6E-24 175.9 23.4 289 211-513 1062-1380(1387)
178 COG2319 FOG: WD40 repeat [Gene 99.9 1.8E-17 4E-22 162.7 38.7 297 196-513 138-441 (466)
179 KOG0649 WD40 repeat protein [G 99.9 2E-18 4.2E-23 141.5 25.8 282 216-511 13-313 (325)
180 KOG1587 Cytoplasmic dynein int 99.8 2.8E-19 6.1E-24 171.7 24.4 267 195-473 225-517 (555)
181 KOG0290 Conserved WD40 repeat- 99.8 2.4E-18 5.1E-23 144.7 25.3 284 209-510 40-361 (364)
182 KOG1587 Cytoplasmic dynein int 99.8 2.6E-18 5.6E-23 165.1 26.4 265 235-512 222-514 (555)
183 KOG1240 Protein kinase contain 99.8 3E-18 6.5E-23 169.9 27.0 295 211-512 1046-1431(1431)
184 KOG0644 Uncharacterized conser 99.8 1.8E-20 3.9E-25 178.2 11.1 284 199-511 171-465 (1113)
185 KOG4227 WD40 repeat protein [G 99.8 4.9E-19 1.1E-23 154.6 18.1 251 257-512 49-320 (609)
186 KOG0771 Prolactin regulatory e 99.8 3.5E-18 7.6E-23 151.2 23.3 196 311-511 148-351 (398)
187 KOG1007 WD repeat protein TSSC 99.8 1.1E-18 2.4E-23 146.5 17.5 221 202-428 112-361 (370)
188 KOG1524 WD40 repeat-containing 99.8 1.9E-18 4.2E-23 156.8 20.3 268 211-510 12-282 (737)
189 KOG0644 Uncharacterized conser 99.8 4.7E-20 1E-24 175.4 8.9 238 256-512 182-424 (1113)
190 PRK11028 6-phosphogluconolacto 99.8 6.3E-17 1.4E-21 152.3 30.0 249 212-472 33-304 (330)
191 KOG1009 Chromatin assembly com 99.8 3.3E-18 7.1E-23 150.3 18.9 256 210-475 62-375 (434)
192 KOG1188 WD40 repeat protein [G 99.8 1.4E-18 3E-23 149.3 15.6 266 196-471 54-345 (376)
193 KOG0290 Conserved WD40 repeat- 99.8 4.3E-18 9.4E-23 143.1 17.7 245 264-513 44-317 (364)
194 KOG1524 WD40 repeat-containing 99.8 7.3E-18 1.6E-22 153.1 18.5 210 225-470 75-284 (737)
195 PRK01742 tolB translocation pr 99.8 2.1E-17 4.6E-22 160.3 22.1 235 234-495 183-426 (429)
196 KOG0771 Prolactin regulatory e 99.8 6.3E-18 1.4E-22 149.6 16.5 196 217-428 148-354 (398)
197 KOG1523 Actin-related protein 99.8 3.6E-17 7.8E-22 139.6 19.9 242 213-494 10-259 (361)
198 KOG2139 WD40 repeat protein [G 99.8 3.4E-16 7.3E-21 135.8 25.5 281 214-511 99-428 (445)
199 KOG1310 WD40 repeat protein [G 99.8 7.8E-18 1.7E-22 153.4 15.2 223 256-478 42-309 (758)
200 KOG1963 WD40 repeat protein [G 99.8 8.6E-16 1.9E-20 148.2 29.6 289 216-512 163-485 (792)
201 KOG1445 Tumor-specific antigen 99.8 1.9E-17 4.1E-22 153.4 16.9 242 221-475 587-847 (1012)
202 KOG2110 Uncharacterized conser 99.8 7.8E-15 1.7E-19 127.9 31.0 236 213-473 5-249 (391)
203 KOG0649 WD40 repeat protein [G 99.8 9.6E-16 2.1E-20 125.9 23.9 239 210-469 59-313 (325)
204 KOG1517 Guanine nucleotide bin 99.8 1.1E-16 2.5E-21 156.5 21.5 278 193-475 1087-1384(1387)
205 KOG4497 Uncharacterized conser 99.7 5.7E-16 1.2E-20 132.7 22.3 274 218-513 13-390 (447)
206 PF02239 Cytochrom_D1: Cytochr 99.7 3.1E-15 6.7E-20 140.3 28.2 304 192-513 16-346 (369)
207 PRK03629 tolB translocation pr 99.7 2.3E-15 5.1E-20 145.6 28.1 234 236-494 180-427 (429)
208 KOG2110 Uncharacterized conser 99.7 4.5E-15 9.7E-20 129.4 26.2 235 263-512 4-246 (391)
209 KOG2139 WD40 repeat protein [G 99.7 3.8E-15 8.3E-20 129.3 23.7 261 205-471 132-430 (445)
210 KOG1240 Protein kinase contain 99.7 3.4E-15 7.4E-20 148.6 24.9 248 258-513 1042-1333(1431)
211 KOG0642 Cell-cycle nuclear pro 99.7 2.9E-16 6.3E-21 143.9 16.0 182 204-388 336-570 (577)
212 KOG1272 WD40-repeat-containing 99.7 5.2E-17 1.1E-21 145.2 10.7 264 216-506 132-401 (545)
213 KOG1272 WD40-repeat-containing 99.7 4.5E-17 9.7E-22 145.6 9.7 230 265-512 130-360 (545)
214 KOG2321 WD40 repeat protein [G 99.7 5.7E-15 1.2E-19 135.7 23.2 285 210-510 48-339 (703)
215 KOG1523 Actin-related protein 99.7 7.1E-16 1.5E-20 131.8 16.2 203 306-512 9-234 (361)
216 PRK01742 tolB translocation pr 99.7 2.6E-15 5.7E-20 145.7 21.2 209 285-512 183-399 (429)
217 PRK05137 tolB translocation pr 99.7 3E-14 6.6E-19 138.8 28.3 234 236-495 183-433 (435)
218 KOG1334 WD40 repeat protein [G 99.7 6.2E-16 1.4E-20 139.2 14.9 256 257-512 135-422 (559)
219 PRK02889 tolB translocation pr 99.7 1.5E-14 3.3E-19 140.2 25.9 218 262-495 193-425 (427)
220 KOG2394 WD40 protein DMR-N9 [G 99.7 4E-15 8.6E-20 135.7 20.1 244 215-494 125-384 (636)
221 KOG4497 Uncharacterized conser 99.7 4.7E-14 1E-18 121.2 25.1 278 213-507 48-425 (447)
222 PRK04922 tolB translocation pr 99.7 2.1E-14 4.7E-19 139.7 26.6 234 236-494 185-432 (433)
223 KOG2111 Uncharacterized conser 99.7 3.1E-14 6.8E-19 121.8 22.9 235 265-512 6-254 (346)
224 KOG2041 WD40 repeat protein [G 99.7 1.8E-14 3.8E-19 135.8 22.5 296 207-510 8-333 (1189)
225 PF08662 eIF2A: Eukaryotic tra 99.6 3.4E-14 7.5E-19 121.0 20.4 156 217-387 9-186 (194)
226 KOG2394 WD40 protein DMR-N9 [G 99.6 9.9E-15 2.1E-19 133.2 16.6 174 222-407 182-384 (636)
227 KOG3881 Uncharacterized conser 99.6 6E-14 1.3E-18 123.3 20.7 246 211-513 53-319 (412)
228 PRK03629 tolB translocation pr 99.6 1.4E-13 3E-18 133.3 25.8 217 211-452 196-427 (429)
229 KOG1354 Serine/threonine prote 99.6 7.2E-14 1.6E-18 120.7 20.3 293 211-511 23-431 (433)
230 PRK05137 tolB translocation pr 99.6 2.8E-13 6E-18 132.1 27.2 204 286-504 182-396 (435)
231 KOG2111 Uncharacterized conser 99.6 2.4E-12 5.1E-17 110.5 28.4 272 216-508 8-316 (346)
232 PF10282 Lactonase: Lactonase, 99.6 9.2E-12 2E-16 117.3 35.4 274 212-492 35-345 (345)
233 PF02239 Cytochrom_D1: Cytochr 99.6 6.1E-13 1.3E-17 124.9 26.7 268 228-513 9-301 (369)
234 PF10282 Lactonase: Lactonase, 99.6 1.3E-11 2.8E-16 116.3 35.7 271 228-512 2-320 (345)
235 KOG0322 G-protein beta subunit 99.6 2.8E-14 6E-19 118.8 15.0 234 185-427 28-322 (323)
236 KOG2315 Predicted translation 99.6 5.5E-13 1.2E-17 122.8 24.8 269 215-512 36-388 (566)
237 PRK04922 tolB translocation pr 99.6 2.5E-13 5.4E-18 132.2 24.1 212 286-512 184-409 (433)
238 KOG2314 Translation initiation 99.6 4.2E-13 9E-18 123.2 23.4 276 217-507 214-560 (698)
239 PRK00178 tolB translocation pr 99.6 1.4E-12 3.1E-17 127.4 28.6 218 263-495 197-428 (430)
240 PF08662 eIF2A: Eukaryotic tra 99.6 2.8E-13 6E-18 115.4 20.4 158 267-436 8-187 (194)
241 PRK04792 tolB translocation pr 99.6 1.1E-12 2.3E-17 127.7 27.0 217 263-494 216-446 (448)
242 PRK02889 tolB translocation pr 99.6 3.8E-13 8.2E-18 130.5 23.7 206 286-506 176-392 (427)
243 TIGR02800 propeller_TolB tol-p 99.6 2E-12 4.3E-17 126.4 27.3 214 263-492 188-416 (417)
244 KOG4547 WD40 repeat-containing 99.5 2E-12 4.4E-17 120.0 22.7 193 222-428 2-220 (541)
245 TIGR02658 TTQ_MADH_Hv methylam 99.5 4.9E-11 1.1E-15 109.3 30.7 262 235-513 27-329 (352)
246 COG2706 3-carboxymuconate cycl 99.5 1.8E-10 3.8E-15 101.4 32.0 276 210-493 36-345 (346)
247 COG5354 Uncharacterized protei 99.5 2.2E-11 4.7E-16 111.1 26.1 275 212-512 31-393 (561)
248 PRK01029 tolB translocation pr 99.5 3.3E-11 7.1E-16 116.4 28.0 222 263-496 183-426 (428)
249 KOG1409 Uncharacterized conser 99.5 2E-12 4.3E-17 112.0 17.2 246 257-512 17-268 (404)
250 KOG1354 Serine/threonine prote 99.5 2.2E-12 4.9E-17 111.7 17.5 248 263-512 24-357 (433)
251 KOG1409 Uncharacterized conser 99.5 5.2E-12 1.1E-16 109.5 19.6 295 203-513 15-393 (404)
252 KOG0280 Uncharacterized conser 99.5 1.3E-11 2.9E-16 104.8 21.2 264 234-512 45-331 (339)
253 KOG1832 HIV-1 Vpr-binding prot 99.5 2.5E-14 5.4E-19 137.9 4.6 299 158-500 1013-1317(1516)
254 TIGR02800 propeller_TolB tol-p 99.5 3.1E-11 6.8E-16 117.9 26.2 206 286-506 170-386 (417)
255 COG2706 3-carboxymuconate cycl 99.5 7.4E-10 1.6E-14 97.6 31.5 268 234-511 15-318 (346)
256 KOG3881 Uncharacterized conser 99.5 5.9E-12 1.3E-16 111.0 18.5 203 213-429 105-321 (412)
257 PRK04792 tolB translocation pr 99.5 1.4E-11 3.1E-16 119.8 23.3 218 211-452 215-446 (448)
258 KOG0280 Uncharacterized conser 99.5 1.4E-11 3.1E-16 104.6 19.6 251 213-474 69-335 (339)
259 PRK00178 tolB translocation pr 99.5 7.3E-11 1.6E-15 115.4 27.3 204 287-505 180-394 (430)
260 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.5E-09 3.1E-14 99.7 33.4 275 192-480 27-338 (352)
261 KOG2659 LisH motif-containing 99.4 2.2E-12 4.9E-17 107.1 13.3 125 1-127 20-154 (228)
262 KOG2321 WD40 repeat protein [G 99.4 3E-11 6.4E-16 111.7 21.2 271 179-473 61-344 (703)
263 PRK01029 tolB translocation pr 99.4 6.8E-11 1.5E-15 114.2 24.2 222 213-454 184-426 (428)
264 PF04762 IKI3: IKI3 family; I 99.4 5.5E-10 1.2E-14 116.5 32.0 285 211-512 73-454 (928)
265 KOG0974 WD-repeat protein WDR6 99.4 1.8E-11 3.9E-16 120.9 19.2 199 265-473 88-289 (967)
266 PF04762 IKI3: IKI3 family; I 99.4 9.2E-10 2E-14 114.9 32.7 293 202-505 109-507 (928)
267 KOG4547 WD40 repeat-containing 99.4 5.7E-11 1.2E-15 110.6 20.5 186 317-512 3-218 (541)
268 KOG1064 RAVE (regulator of V-A 99.4 1.9E-12 4E-17 134.0 11.5 224 263-507 2207-2439(2439)
269 KOG0309 Conserved WD40 repeat- 99.4 3.9E-12 8.5E-17 120.7 12.4 293 203-512 14-337 (1081)
270 KOG0974 WD-repeat protein WDR6 99.4 4.8E-11 1E-15 118.0 19.9 272 214-512 8-286 (967)
271 TIGR03300 assembly_YfgL outer 99.4 4E-10 8.7E-15 108.3 26.2 255 224-511 104-376 (377)
272 TIGR03300 assembly_YfgL outer 99.3 1.9E-09 4.1E-14 103.6 28.4 265 224-513 64-337 (377)
273 COG5354 Uncharacterized protei 99.3 1.2E-09 2.6E-14 100.0 24.8 269 214-506 72-421 (561)
274 PLN02919 haloacid dehalogenase 99.3 2.7E-09 5.9E-14 113.6 30.7 243 268-513 571-887 (1057)
275 PF07433 DUF1513: Protein of u 99.3 4.2E-09 9.1E-14 93.1 26.4 240 216-504 7-276 (305)
276 KOG4190 Uncharacterized conser 99.3 1.6E-11 3.4E-16 113.0 11.1 282 211-510 733-1032(1034)
277 PLN02919 haloacid dehalogenase 99.3 1.1E-08 2.3E-13 109.1 32.3 255 217-476 571-892 (1057)
278 PF08450 SGL: SMP-30/Gluconola 99.3 2.4E-08 5.2E-13 89.7 29.4 219 269-502 4-243 (246)
279 KOG1912 WD40 repeat protein [G 99.3 1E-09 2.2E-14 105.3 20.8 241 263-512 14-302 (1062)
280 KOG1912 WD40 repeat protein [G 99.2 6.6E-10 1.4E-14 106.6 18.7 246 214-473 16-305 (1062)
281 COG4946 Uncharacterized protei 99.2 9.9E-09 2.2E-13 93.3 25.2 152 205-368 351-507 (668)
282 PRK04043 tolB translocation pr 99.2 1.5E-08 3.2E-13 97.3 28.4 207 266-489 189-416 (419)
283 KOG2041 WD40 repeat protein [G 99.2 4.6E-10 1E-14 106.6 17.1 233 263-505 13-279 (1189)
284 KOG4532 WD40-like repeat conta 99.2 6.7E-09 1.4E-13 87.5 21.2 246 217-473 71-332 (344)
285 KOG4190 Uncharacterized conser 99.2 4E-11 8.6E-16 110.4 8.1 204 299-510 728-943 (1034)
286 KOG2315 Predicted translation 99.2 6.4E-09 1.4E-13 96.5 21.8 249 217-494 129-410 (566)
287 KOG1064 RAVE (regulator of V-A 99.2 1.2E-10 2.5E-15 121.2 11.2 214 276-513 2180-2397(2439)
288 PRK04043 tolB translocation pr 99.2 3.8E-08 8.2E-13 94.6 27.1 202 286-505 169-388 (419)
289 PRK11138 outer membrane biogen 99.2 4.2E-08 9E-13 94.7 27.4 259 224-513 119-393 (394)
290 KOG3914 WD repeat protein WDR4 99.2 5.3E-10 1.2E-14 99.4 12.5 163 216-388 65-232 (390)
291 PF15492 Nbas_N: Neuroblastoma 99.1 1.8E-07 3.9E-12 80.3 27.0 241 218-484 2-271 (282)
292 COG5170 CDC55 Serine/threonine 99.1 1.7E-09 3.6E-14 92.9 14.7 285 211-511 24-364 (460)
293 KOG4714 Nucleoporin [Nuclear s 99.1 1.2E-09 2.7E-14 91.4 12.6 262 216-512 39-316 (319)
294 PF13360 PQQ_2: PQQ-like domai 99.1 1.3E-07 2.8E-12 84.7 26.8 218 285-513 2-229 (238)
295 KOG2066 Vacuolar assembly/sort 99.1 5.3E-09 1.2E-13 101.2 18.1 188 213-428 39-233 (846)
296 PF13360 PQQ_2: PQQ-like domai 99.1 1.1E-07 2.3E-12 85.2 24.2 228 234-479 2-237 (238)
297 KOG4532 WD40-like repeat conta 99.1 4.5E-08 9.8E-13 82.6 19.7 223 275-503 83-321 (344)
298 PF08450 SGL: SMP-30/Gluconola 99.1 5.5E-07 1.2E-11 80.9 28.2 222 217-461 3-244 (246)
299 PF15492 Nbas_N: Neuroblastoma 99.1 2.5E-07 5.5E-12 79.4 24.1 198 313-512 3-257 (282)
300 COG4946 Uncharacterized protei 99.1 1.5E-07 3.2E-12 85.9 23.7 223 222-461 275-507 (668)
301 KOG1275 PAB-dependent poly(A) 99.1 3.8E-09 8.2E-14 103.4 14.5 183 275-470 146-340 (1118)
302 KOG0309 Conserved WD40 repeat- 99.0 2.1E-09 4.5E-14 102.7 11.2 245 213-473 67-340 (1081)
303 PRK11138 outer membrane biogen 99.0 4E-07 8.7E-12 87.9 27.2 272 224-513 68-352 (394)
304 KOG4714 Nucleoporin [Nuclear s 99.0 2.7E-08 5.8E-13 83.6 14.2 160 211-380 87-255 (319)
305 KOG4649 PQQ (pyrrolo-quinoline 99.0 2.3E-06 5E-11 72.3 25.2 257 225-511 23-297 (354)
306 KOG3617 WD40 and TPR repeat-co 98.9 4.9E-08 1.1E-12 95.0 17.3 234 266-503 17-374 (1416)
307 KOG2314 Translation initiation 98.9 4.2E-07 9E-12 84.6 22.0 253 194-464 284-559 (698)
308 KOG2695 WD40 repeat protein [G 98.9 6.8E-09 1.5E-13 90.6 9.5 172 219-406 217-401 (425)
309 PF00930 DPPIV_N: Dipeptidyl p 98.9 1.7E-06 3.7E-11 82.0 26.6 264 222-502 1-345 (353)
310 KOG1920 IkappaB kinase complex 98.9 1.5E-06 3.2E-11 88.6 26.8 235 264-510 68-361 (1265)
311 KOG3914 WD repeat protein WDR4 98.9 3.8E-08 8.3E-13 87.8 13.6 159 266-434 64-230 (390)
312 PF00400 WD40: WD domain, G-be 98.9 5.8E-09 1.3E-13 63.3 5.9 39 474-512 1-39 (39)
313 KOG1645 RING-finger-containing 98.9 3.5E-07 7.6E-12 81.8 19.2 247 257-512 186-459 (463)
314 KOG2695 WD40 repeat protein [G 98.8 3.9E-08 8.4E-13 86.0 9.4 171 313-494 217-402 (425)
315 KOG2114 Vacuolar assembly/sort 98.8 9.1E-07 2E-11 86.8 19.5 196 314-513 30-242 (933)
316 KOG1920 IkappaB kinase complex 98.8 5E-06 1.1E-10 84.9 25.2 201 214-429 69-323 (1265)
317 KOG3621 WD40 repeat-containing 98.8 3.3E-06 7E-11 81.3 22.4 210 212-436 32-254 (726)
318 KOG4649 PQQ (pyrrolo-quinoline 98.8 1.7E-05 3.7E-10 67.3 23.9 258 224-512 62-349 (354)
319 cd00216 PQQ_DH Dehydrogenases 98.8 1.3E-05 2.8E-10 79.4 27.8 273 225-513 61-423 (488)
320 KOG1832 HIV-1 Vpr-binding prot 98.7 1.7E-08 3.6E-13 98.7 6.4 260 205-503 1094-1378(1516)
321 KOG2114 Vacuolar assembly/sort 98.7 2.2E-06 4.7E-11 84.3 20.4 207 271-487 30-259 (933)
322 COG5170 CDC55 Serine/threonine 98.7 5.3E-07 1.1E-11 77.9 13.6 205 306-513 25-308 (460)
323 PF08513 LisH: LisH; InterPro 98.7 2.8E-08 6E-13 53.3 3.7 27 8-34 1-27 (27)
324 KOG0882 Cyclophilin-related pe 98.7 2E-07 4.3E-12 84.5 11.0 210 263-479 8-238 (558)
325 PF06433 Me-amine-dh_H: Methyl 98.7 2.4E-05 5.1E-10 70.6 24.0 261 235-513 17-319 (342)
326 PF06977 SdiA-regulated: SdiA- 98.7 1.1E-05 2.3E-10 70.9 21.3 207 261-469 18-247 (248)
327 PF00400 WD40: WD domain, G-be 98.6 1.1E-07 2.4E-12 57.5 5.8 39 339-377 1-39 (39)
328 KOG1008 Uncharacterized conser 98.6 3.8E-08 8.2E-13 93.0 5.4 203 214-428 57-275 (783)
329 cd00216 PQQ_DH Dehydrogenases 98.6 4.5E-05 9.7E-10 75.6 26.6 238 226-482 111-434 (488)
330 KOG0882 Cyclophilin-related pe 98.6 3.1E-07 6.8E-12 83.2 10.1 200 305-512 7-229 (558)
331 KOG0396 Uncharacterized conser 98.6 1.9E-06 4E-11 76.6 14.2 172 5-178 113-298 (389)
332 PF07433 DUF1513: Protein of u 98.6 2.4E-05 5.2E-10 69.7 21.1 185 219-425 56-282 (305)
333 PRK02888 nitrous-oxide reducta 98.6 2.9E-05 6.4E-10 75.7 23.4 221 275-503 140-450 (635)
334 KOG2066 Vacuolar assembly/sort 98.6 1.2E-06 2.7E-11 85.3 13.4 179 307-510 39-229 (846)
335 PF11768 DUF3312: Protein of u 98.5 0.00014 3E-09 69.4 26.5 111 400-512 208-327 (545)
336 PF04053 Coatomer_WDAD: Coatom 98.5 3.7E-05 8E-10 73.9 23.3 220 213-472 32-262 (443)
337 KOG3617 WD40 and TPR repeat-co 98.5 7.1E-06 1.5E-10 80.5 18.2 109 217-337 19-131 (1416)
338 COG3391 Uncharacterized conser 98.5 0.00029 6.3E-09 67.4 29.2 224 265-494 74-308 (381)
339 PF04841 Vps16_N: Vps16, N-ter 98.5 0.00015 3.2E-09 69.8 26.9 200 287-499 62-274 (410)
340 PF00780 CNH: CNH domain; Int 98.4 0.00023 4.9E-09 65.2 25.3 236 223-483 5-266 (275)
341 PF06433 Me-amine-dh_H: Methyl 98.4 0.00025 5.5E-09 64.1 24.1 274 196-482 21-330 (342)
342 smart00667 LisH Lissencephaly 98.4 3.1E-07 6.6E-12 53.5 3.9 32 6-37 2-33 (34)
343 KOG1275 PAB-dependent poly(A) 98.4 7.5E-06 1.6E-10 81.1 14.8 183 224-428 146-342 (1118)
344 PF08596 Lgl_C: Lethal giant l 98.3 0.00012 2.7E-09 69.4 21.1 235 266-504 3-326 (395)
345 KOG1008 Uncharacterized conser 98.3 2.4E-07 5.3E-12 87.7 2.7 200 264-472 56-275 (783)
346 PF11768 DUF3312: Protein of u 98.3 4.3E-06 9.3E-11 79.3 10.9 82 205-297 251-332 (545)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0015 3.3E-08 65.1 29.4 284 225-513 69-489 (527)
348 KOG1645 RING-finger-containing 98.3 0.00011 2.4E-09 66.2 18.5 246 210-472 190-461 (463)
349 COG0823 TolB Periplasmic compo 98.3 0.00024 5.2E-09 68.2 21.4 218 263-494 191-423 (425)
350 KOG3621 WD40 repeat-containing 98.3 1.8E-05 4E-10 76.3 13.6 152 263-419 32-189 (726)
351 PF08596 Lgl_C: Lethal giant l 98.3 0.00043 9.4E-09 65.7 22.8 240 215-462 3-326 (395)
352 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00043 9.3E-09 65.7 23.0 226 273-503 1-300 (353)
353 PF04053 Coatomer_WDAD: Coatom 98.3 0.0004 8.7E-09 66.9 22.6 217 263-511 31-259 (443)
354 COG0823 TolB Periplasmic compo 98.2 9.8E-05 2.1E-09 70.8 18.3 200 287-500 174-385 (425)
355 PF14583 Pectate_lyase22: Olig 98.2 0.0016 3.4E-08 60.3 24.6 224 271-505 42-303 (386)
356 PRK02888 nitrous-oxide reducta 98.2 0.00019 4.1E-09 70.3 19.6 179 221-429 200-405 (635)
357 PF02897 Peptidase_S9_N: Proly 98.2 0.0057 1.2E-07 59.7 29.7 244 215-477 125-409 (414)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0094 2E-07 59.5 30.3 151 225-384 120-338 (527)
359 PF03178 CPSF_A: CPSF A subuni 98.1 0.0011 2.3E-08 62.2 22.4 218 236-469 3-262 (321)
360 COG3391 Uncharacterized conser 98.1 0.0066 1.4E-07 58.2 27.6 235 266-510 32-279 (381)
361 COG3386 Gluconolactonase [Carb 98.1 0.0023 4.9E-08 58.6 22.4 224 219-461 30-274 (307)
362 COG3490 Uncharacterized protei 98.1 0.0012 2.6E-08 57.3 18.7 241 217-470 71-346 (366)
363 PF03178 CPSF_A: CPSF A subuni 98.1 0.0017 3.7E-08 60.9 22.1 213 286-510 2-261 (321)
364 PF10607 CLTH: CTLH/CRA C-term 98.0 3.1E-05 6.7E-10 63.0 9.1 123 44-168 5-138 (145)
365 smart00668 CTLH C-terminal to 98.0 4.9E-06 1.1E-10 55.4 3.5 48 43-90 4-56 (58)
366 COG3204 Uncharacterized protei 98.0 0.0022 4.7E-08 56.2 20.2 174 263-436 84-271 (316)
367 PF14583 Pectate_lyase22: Olig 98.0 0.013 2.7E-07 54.5 29.2 274 220-511 42-378 (386)
368 PF06977 SdiA-regulated: SdiA- 98.0 0.0043 9.3E-08 54.7 21.6 202 305-511 19-247 (248)
369 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0083 1.8E-07 57.9 25.5 190 202-408 70-270 (410)
370 KOG4640 Anaphase-promoting com 98.0 3.7E-05 8.1E-10 73.4 8.8 95 213-317 20-115 (665)
371 COG3490 Uncharacterized protei 97.9 0.011 2.4E-07 51.6 22.7 264 221-511 43-345 (366)
372 COG3386 Gluconolactonase [Carb 97.9 0.0056 1.2E-07 56.0 22.5 221 271-504 31-276 (307)
373 smart00320 WD40 WD40 repeats. 97.9 5E-05 1.1E-09 45.1 5.7 39 474-512 2-40 (40)
374 PF14655 RAB3GAP2_N: Rab3 GTPa 97.8 0.0037 7.9E-08 59.3 20.0 97 218-317 6-118 (415)
375 KOG4640 Anaphase-promoting com 97.8 0.0001 2.2E-09 70.6 9.5 95 263-359 19-115 (665)
376 PRK13616 lipoprotein LpqB; Pro 97.8 0.0023 5.1E-08 64.3 19.4 149 214-378 350-524 (591)
377 PRK13616 lipoprotein LpqB; Pro 97.8 0.0026 5.6E-08 64.0 19.4 190 264-468 349-564 (591)
378 PF00780 CNH: CNH domain; Int 97.8 0.018 4E-07 52.6 23.9 216 275-512 6-253 (275)
379 PF05096 Glu_cyclase_2: Glutam 97.8 0.016 3.5E-07 50.8 21.7 206 204-423 35-256 (264)
380 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0029 6.2E-08 47.1 14.4 100 267-374 2-109 (111)
381 KOG2444 WD40 repeat protein [G 97.7 4.7E-05 1E-09 63.7 5.0 139 363-512 32-175 (238)
382 PF08553 VID27: VID27 cytoplas 97.7 0.00087 1.9E-08 68.3 14.4 136 369-511 502-644 (794)
383 PF08553 VID27: VID27 cytoplas 97.7 0.0017 3.7E-08 66.2 15.6 146 319-471 493-646 (794)
384 PF02897 Peptidase_S9_N: Proly 97.6 0.086 1.9E-06 51.5 27.3 221 266-497 125-383 (414)
385 PF05694 SBP56: 56kDa selenium 97.5 0.084 1.8E-06 49.7 23.8 196 275-474 86-344 (461)
386 KOG4499 Ca2+-binding protein R 97.5 0.034 7.4E-07 47.1 18.6 207 278-494 29-263 (310)
387 PHA02713 hypothetical protein; 97.5 0.015 3.4E-07 58.6 20.2 184 318-513 303-532 (557)
388 PF14727 PHTB1_N: PTHB1 N-term 97.5 0.099 2.1E-06 50.0 28.7 271 224-510 36-356 (418)
389 PF07995 GSDH: Glucose / Sorbo 97.5 0.073 1.6E-06 49.9 23.3 247 215-467 3-330 (331)
390 KOG2079 Vacuolar assembly/sort 97.5 0.0031 6.8E-08 64.5 14.4 102 275-378 98-202 (1206)
391 KOG4441 Proteins containing BT 97.5 0.014 3E-07 58.8 19.1 227 275-513 284-545 (571)
392 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.014 3.1E-07 43.5 13.9 101 310-423 2-109 (111)
393 COG3204 Uncharacterized protei 97.4 0.045 9.8E-07 48.3 19.0 169 211-388 83-271 (316)
394 KOG1897 Damage-specific DNA bi 97.4 0.21 4.5E-06 51.5 29.8 289 211-510 528-894 (1096)
395 smart00320 WD40 WD40 repeats. 97.4 0.00047 1E-08 40.6 5.2 38 340-377 3-40 (40)
396 PHA02713 hypothetical protein; 97.3 0.056 1.2E-06 54.7 21.8 196 275-484 303-545 (557)
397 PF14870 PSII_BNR: Photosynthe 97.3 0.12 2.6E-06 47.2 26.6 237 216-469 64-301 (302)
398 PF05694 SBP56: 56kDa selenium 97.3 0.073 1.6E-06 50.1 20.4 258 203-462 53-393 (461)
399 KOG2079 Vacuolar assembly/sort 97.3 0.00074 1.6E-08 68.8 7.4 96 411-507 100-198 (1206)
400 KOG2395 Protein involved in va 97.3 0.007 1.5E-07 57.3 13.0 146 318-471 344-499 (644)
401 TIGR03074 PQQ_membr_DH membran 97.2 0.16 3.5E-06 52.8 23.7 119 224-346 193-353 (764)
402 KOG4441 Proteins containing BT 97.2 0.083 1.8E-06 53.3 20.9 232 222-475 282-549 (571)
403 KOG2817 Predicted E3 ubiquitin 97.2 0.012 2.6E-07 53.8 13.1 99 5-103 113-225 (394)
404 TIGR02604 Piru_Ver_Nterm putat 97.1 0.27 5.8E-06 47.0 23.9 147 214-370 14-204 (367)
405 PF05096 Glu_cyclase_2: Glutam 97.1 0.18 3.8E-06 44.5 23.7 194 298-503 35-249 (264)
406 PRK10115 protease 2; Provision 97.0 0.54 1.2E-05 48.9 28.8 111 265-378 127-254 (686)
407 COG1520 FOG: WD40-like repeat 97.0 0.31 6.6E-06 46.8 22.6 198 275-483 68-279 (370)
408 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0027 5.9E-08 39.3 5.5 35 263-298 10-44 (47)
409 KOG2280 Vacuolar assembly/sort 97.0 0.12 2.6E-06 51.5 19.1 198 286-495 64-270 (829)
410 PF10647 Gmad1: Lipoprotein Lp 97.0 0.2 4.4E-06 44.9 19.5 166 266-434 25-203 (253)
411 PRK10115 protease 2; Provision 97.0 0.63 1.4E-05 48.4 32.5 240 215-475 128-397 (686)
412 KOG2395 Protein involved in va 96.9 0.018 3.9E-07 54.6 12.3 133 364-504 349-491 (644)
413 TIGR03074 PQQ_membr_DH membran 96.9 0.44 9.6E-06 49.7 23.6 113 276-389 194-354 (764)
414 PF15390 DUF4613: Domain of un 96.9 0.5 1.1E-05 46.1 24.9 122 211-337 54-186 (671)
415 PHA03098 kelch-like protein; P 96.7 0.16 3.4E-06 51.6 19.0 190 275-475 294-514 (534)
416 PF14870 PSII_BNR: Photosynthe 96.7 0.44 9.6E-06 43.5 32.1 284 205-511 8-301 (302)
417 KOG1897 Damage-specific DNA bi 96.7 0.91 2E-05 47.1 27.3 270 213-503 487-794 (1096)
418 PF15390 DUF4613: Domain of un 96.7 0.22 4.7E-06 48.5 17.9 117 263-380 55-187 (671)
419 PF07995 GSDH: Glucose / Sorbo 96.7 0.54 1.2E-05 44.1 25.9 238 266-509 3-330 (331)
420 COG4257 Vgb Streptogramin lyas 96.7 0.37 8.1E-06 42.2 20.1 200 265-475 62-265 (353)
421 KOG2444 WD40 repeat protein [G 96.7 0.0078 1.7E-07 50.8 7.4 104 276-380 70-178 (238)
422 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0074 1.6E-07 37.4 5.2 35 306-341 10-44 (47)
423 PF12234 Rav1p_C: RAVE protein 96.6 0.062 1.3E-06 53.8 14.3 110 268-379 33-156 (631)
424 PF10168 Nup88: Nuclear pore c 96.5 1.2 2.7E-05 46.1 24.0 74 265-339 85-181 (717)
425 KOG3630 Nuclear pore complex, 96.5 0.034 7.4E-07 57.7 12.0 149 350-503 101-262 (1405)
426 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 0.93 2E-05 43.4 22.1 41 349-389 307-347 (415)
427 TIGR03118 PEPCTERM_chp_1 conse 96.3 0.72 1.6E-05 41.3 26.0 226 266-494 24-307 (336)
428 COG4257 Vgb Streptogramin lyas 96.3 0.66 1.4E-05 40.7 17.8 200 306-513 60-261 (353)
429 KOG4499 Ca2+-binding protein R 96.3 0.62 1.3E-05 39.8 18.8 143 264-416 108-272 (310)
430 PHA03098 kelch-like protein; P 96.3 0.58 1.3E-05 47.5 19.7 197 223-436 293-519 (534)
431 PF10647 Gmad1: Lipoprotein Lp 96.2 0.86 1.9E-05 40.9 23.3 149 309-464 25-187 (253)
432 KOG3630 Nuclear pore complex, 96.2 0.048 1E-06 56.7 10.7 158 207-367 94-261 (1405)
433 PRK13684 Ycf48-like protein; P 96.1 1.2 2.6E-05 41.9 30.8 277 211-513 43-330 (334)
434 PF10168 Nup88: Nuclear pore c 96.0 0.78 1.7E-05 47.5 18.9 82 214-297 85-182 (717)
435 KOG1916 Nuclear protein, conta 96.0 0.0018 3.9E-08 64.8 0.1 170 207-384 126-328 (1283)
436 KOG2247 WD40 repeat-containing 95.9 0.00098 2.1E-08 62.2 -1.9 145 218-375 39-184 (615)
437 PF02333 Phytase: Phytase; In 95.9 1.6 3.5E-05 41.1 20.9 188 317-512 66-288 (381)
438 TIGR03118 PEPCTERM_chp_1 conse 95.8 1.3 2.9E-05 39.7 20.3 202 309-513 24-278 (336)
439 PHA02790 Kelch-like protein; P 95.8 0.92 2E-05 45.2 17.9 186 275-474 271-472 (480)
440 PF10433 MMS1_N: Mono-function 95.6 2.9 6.4E-05 42.0 24.7 242 264-511 43-339 (504)
441 KOG2247 WD40 repeat-containing 95.6 0.0018 3.8E-08 60.6 -1.7 144 352-506 37-180 (615)
442 PHA02790 Kelch-like protein; P 95.5 0.64 1.4E-05 46.3 15.8 180 318-513 271-469 (480)
443 PRK13684 Ycf48-like protein; P 95.3 2.5 5.5E-05 39.7 25.2 179 283-470 149-329 (334)
444 PF12234 Rav1p_C: RAVE protein 95.3 0.75 1.6E-05 46.4 15.1 99 411-512 42-154 (631)
445 TIGR02604 Piru_Ver_Nterm putat 95.1 2.1 4.6E-05 40.9 17.5 149 308-462 14-203 (367)
446 PF13449 Phytase-like: Esteras 95.1 2.6 5.6E-05 39.5 17.7 151 350-501 20-231 (326)
447 COG5276 Uncharacterized conser 95.1 2.3 5E-05 37.9 21.5 113 264-382 86-202 (370)
448 PF10214 Rrn6: RNA polymerase 94.9 6.3 0.00014 41.9 22.4 166 211-380 77-277 (765)
449 COG3823 Glutamine cyclotransfe 94.7 1.7 3.7E-05 36.6 13.1 180 224-417 55-248 (262)
450 PF08728 CRT10: CRT10; InterP 94.7 2 4.4E-05 43.9 16.3 151 225-378 49-245 (717)
451 COG5276 Uncharacterized conser 94.7 3 6.6E-05 37.2 24.9 195 212-428 85-285 (370)
452 PF13449 Phytase-like: Esteras 94.6 3.1 6.6E-05 39.0 16.6 152 213-366 19-231 (326)
453 KOG2280 Vacuolar assembly/sort 94.5 2.2 4.9E-05 43.0 15.7 174 328-510 63-242 (829)
454 PF14727 PHTB1_N: PTHB1 N-term 94.3 2.5 5.5E-05 40.7 15.4 147 361-512 37-202 (418)
455 PF14781 BBS2_N: Ciliary BBSom 94.1 2.2 4.7E-05 33.3 13.3 119 217-341 2-129 (136)
456 PF03022 MRJP: Major royal jel 94.1 4.6 9.9E-05 37.0 16.5 142 372-513 35-214 (287)
457 COG5167 VID27 Protein involved 93.8 1.1 2.5E-05 42.8 11.7 136 360-504 478-623 (776)
458 smart00036 CNH Domain found in 93.8 5.6 0.00012 36.8 27.3 238 224-482 12-280 (302)
459 KOG1983 Tomosyn and related SN 93.7 1.9 4E-05 46.8 14.8 35 210-245 32-66 (993)
460 KOG4460 Nuclear pore complex, 93.7 1.2 2.7E-05 42.8 11.8 78 309-386 105-205 (741)
461 PF07569 Hira: TUP1-like enhan 93.6 0.5 1.1E-05 41.2 8.7 63 450-513 18-94 (219)
462 COG4590 ABC-type uncharacteriz 93.5 2.1 4.5E-05 40.5 12.6 228 275-511 126-383 (733)
463 PF10313 DUF2415: Uncharacteri 93.4 0.4 8.8E-06 28.8 5.3 32 265-296 1-35 (43)
464 COG3292 Predicted periplasmic 93.2 9.4 0.0002 37.6 18.1 274 212-509 163-442 (671)
465 PF09398 FOP_dimer: FOP N term 93.1 0.14 3E-06 35.9 3.5 29 10-38 21-49 (81)
466 PF10313 DUF2415: Uncharacteri 93.1 0.47 1E-05 28.5 5.2 31 350-380 1-34 (43)
467 PF07569 Hira: TUP1-like enhan 92.8 0.89 1.9E-05 39.6 9.0 67 272-339 18-97 (219)
468 KOG2377 Uncharacterized conser 92.8 9.4 0.0002 36.4 17.8 118 263-382 65-188 (657)
469 PF05935 Arylsulfotrans: Aryls 92.7 11 0.00025 37.4 23.0 149 278-432 117-305 (477)
470 PF07250 Glyoxal_oxid_N: Glyox 92.6 2.7 5.8E-05 37.1 11.6 148 332-482 49-207 (243)
471 PLN00033 photosystem II stabil 92.6 10 0.00022 36.5 26.9 152 310-469 241-396 (398)
472 PF10395 Utp8: Utp8 family; I 92.5 14 0.0003 37.7 23.7 203 270-481 33-268 (670)
473 PF09862 DUF2089: Protein of u 92.5 0.41 8.8E-06 36.0 5.5 75 9-98 37-113 (113)
474 PF10395 Utp8: Utp8 family; I 92.5 14 0.0003 37.7 23.2 219 203-428 61-305 (670)
475 TIGR03606 non_repeat_PQQ dehyd 92.4 12 0.00025 36.7 20.5 115 349-463 29-166 (454)
476 COG5167 VID27 Protein involved 92.4 3.1 6.8E-05 40.0 12.3 146 318-472 478-632 (776)
477 COG5290 IkappaB kinase complex 92.3 11 0.00025 38.6 16.4 67 263-336 75-141 (1243)
478 KOG1916 Nuclear protein, conta 92.3 0.072 1.6E-06 54.1 1.7 115 396-513 131-264 (1283)
479 PF03022 MRJP: Major royal jel 92.2 9.1 0.0002 35.0 19.4 161 216-380 3-216 (287)
480 PF14761 HPS3_N: Hermansky-Pud 92.0 7.1 0.00015 33.4 15.1 102 277-381 29-165 (215)
481 KOG4460 Nuclear pore complex, 91.9 2.2 4.8E-05 41.2 10.7 69 444-512 105-196 (741)
482 COG3823 Glutamine cyclotransfe 91.8 7.4 0.00016 33.0 16.1 178 312-502 50-247 (262)
483 KOG2377 Uncharacterized conser 91.7 2.9 6.2E-05 39.7 11.1 104 396-502 65-171 (657)
484 PF08728 CRT10: CRT10; InterP 91.5 3.6 7.7E-05 42.2 12.5 119 216-336 103-245 (717)
485 PLN02153 epithiospecifier prot 91.5 13 0.00027 35.2 22.5 66 275-341 85-171 (341)
486 TIGR01063 gyrA DNA gyrase, A s 91.4 23 0.00049 37.9 25.3 234 274-511 494-766 (800)
487 TIGR03548 mutarot_permut cycli 91.2 13 0.00028 34.8 21.5 106 275-382 72-197 (323)
488 PLN02153 epithiospecifier prot 91.2 14 0.0003 35.0 23.1 106 275-382 32-170 (341)
489 TIGR02276 beta_rpt_yvtn 40-res 91.2 1.4 3E-05 26.3 6.1 40 452-492 1-41 (42)
490 PF14781 BBS2_N: Ciliary BBSom 90.9 6.5 0.00014 30.7 12.0 122 355-480 4-133 (136)
491 KOG2063 Vacuolar assembly/sort 90.6 26 0.00056 37.2 18.4 75 220-298 21-100 (877)
492 PF12657 TFIIIC_delta: Transcr 90.3 1.9 4.1E-05 36.0 8.1 28 486-513 87-120 (173)
493 PF14761 HPS3_N: Hermansky-Pud 89.8 12 0.00026 32.1 14.0 105 226-339 29-165 (215)
494 PRK14131 N-acetylneuraminic ac 89.6 20 0.00043 34.4 19.2 223 278-506 42-354 (376)
495 PLN02193 nitrile-specifier pro 89.6 24 0.00051 35.2 21.5 198 275-476 175-414 (470)
496 TIGR03606 non_repeat_PQQ dehyd 89.5 22 0.00048 34.8 31.1 115 211-328 27-166 (454)
497 TIGR03548 mutarot_permut cycli 89.4 19 0.0004 33.8 21.7 139 318-463 72-233 (323)
498 PF11635 Med16: Mediator compl 89.4 32 0.00069 36.6 17.9 67 443-509 260-345 (753)
499 PF12657 TFIIIC_delta: Transcr 89.3 2.9 6.3E-05 34.9 8.6 31 350-380 86-122 (173)
500 PF14269 Arylsulfotran_2: Aryl 89.3 18 0.00038 33.4 16.1 70 309-378 145-219 (299)
No 1
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.2e-99 Score=633.02 Aligned_cols=508 Identities=71% Similarity=1.155 Sum_probs=499.3
Q ss_pred CccccChhhHHHHHHHHHhhcChHHHHHHHHhhcCccccccccHHHHHHHhccCChhhHHhhhccccCChhhHHHHHHHH
Q 010324 1 MTLEIEARDVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVAQLKLPRNKLEDLYEQI 80 (513)
Q Consensus 1 ~~~~~~~~e~~~li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~ 80 (513)
|+++|.+.+|+|||.|||+|+.++.|+++||+|.++.+|+.++++.|-+.|.+|.||.+++.+..+++|++.+..+|||.
T Consensus 1 msieiessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 1 MSIEIESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPDKKLIDLYEQI 80 (508)
T ss_pred CceeeecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCchhHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHhCchhhhhccCCHHHHHHHHHHhcccCCCccccccCChHHHHHHHHHHHHhcccccCChhHH
Q 010324 81 VLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEHLLVRTYFDAHEAYQDSTKERRRAQIAQAIAAEVSVVPPSRL 160 (513)
Q Consensus 81 ~le~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~rl 160 (513)
++||+|.+|...|+.+||+.-++..+++.+||+|.+|+.+|...++++.|+|.+.+++++|..+++++..+...+||+||
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~dssKEkrRa~IAQ~ls~EV~VVppSRL 160 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGDSSKEKRRAVIAQALSGEVHVVPPSRL 160 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCcchHHHHHHHHHHHhcCceEEcChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCCCCCceeeccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEE
Q 010324 161 MALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVV 240 (513)
Q Consensus 161 ~~l~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~i 240 (513)
++|++|+++||+.++++||+..+++|++....+...++.+|..+.+.|++|.++.+.|..|||||+||++|+.||.|. +
T Consensus 161 laLlGQaLKWQqHQGLLPPGt~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiE-V 239 (508)
T KOG0275|consen 161 LALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIE-V 239 (508)
T ss_pred HHHHHHHhhhHhhcCCCCCCceeeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEeeccccceee-e
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997 9
Q ss_pred EeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCC
Q 010324 241 WDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS 320 (513)
Q Consensus 241 wd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 320 (513)
||+.+|++.+.+.++....+..+..+|.|+.|+.|...+|+|+.||.|++|.+.+|.+++++...|...|+|+.|+.|+.
T Consensus 240 Wny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S 319 (508)
T KOG0275|consen 240 WNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS 319 (508)
T ss_pred ehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCcee
Q 010324 321 QILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASV 400 (513)
Q Consensus 321 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 400 (513)
.+++++.|.++++..+++|++++.+++|.+.|+...|++||.++++++.||+|++|+..+.++..++++. +.+.+|
T Consensus 320 qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~----~~d~~v 395 (508)
T KOG0275|consen 320 QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL----GTDYPV 395 (508)
T ss_pred hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC----CCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876 467899
Q ss_pred eEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEee
Q 010324 401 NSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM 480 (513)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 480 (513)
+++...|.++..+++|...+++++.++.|+.++.+..+...++...+++.||.|.++++.++|+.+++|...+|++..++
T Consensus 396 nsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 396 NSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred eeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 481 KVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 481 ~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
..|...|..++-+|..+.+|+.+.||.+++|+|
T Consensus 476 ~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 476 PVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred ecccccccccccCcccchhhhhcccchhhhcCC
Confidence 999999999999999999999999999999997
No 2
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.9e-72 Score=483.94 Aligned_cols=485 Identities=19% Similarity=0.319 Sum_probs=403.0
Q ss_pred ccChhhHHHHHHHHHhhcChHHHHHHHHhhcCccccccccHHHHHHHhccCChhhHHhhhccccCCh-----hhHHHHHH
Q 010324 4 EIEARDVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVAQLKLPR-----NKLEDLYE 78 (513)
Q Consensus 4 ~~~~~e~~~li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~-----~~~~~~~~ 78 (513)
.|.+.|++|++.|+|.++||.+|+..||.|||+.+++ ..++.|.++|+.|+|+.++..+..+.+++ ++.|++.+
T Consensus 14 likk~efi~il~q~l~slgy~~S~~~lE~es~ll~~t-at~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fLv~k 92 (519)
T KOG0293|consen 14 LIKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPT-ATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFLVNK 92 (519)
T ss_pred eeccchhhHhHHHHHHhcCccccchhhHHhhCccccc-chHHHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHHHHH
Confidence 5788999999999999999999999999999999987 55889999999999999999888875554 55889999
Q ss_pred HHHHHHHHcCChHHHHHHHHhCchhhhhccCCHHHHHHHHHHhcccC-CCccccccCChHHHHHH----HHHHHHhcccc
Q 010324 79 QIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEHLLVRTY-FDAHEAYQDSTKERRRA----QIAQAIAAEVS 153 (513)
Q Consensus 79 ~~~le~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~~~~~----~l~~~~~~~~~ 153 (513)
|+|||++..+....|+.+||+...+..+. .+++++|...|..++ ...++..-.......|. +|.+.+++++
T Consensus 93 Q~fLEf~k~~~is~al~~l~~~~~~lr~~---~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~i- 168 (519)
T KOG0293|consen 93 QIFLEFLKTGSISHALPVLRNPVLYLRKN---KKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNI- 168 (519)
T ss_pred HHHHHHHhhccHhhhhHhhhcchhhhhhh---HHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhh-
Confidence 99999999999999999999876665554 567888877665433 22333322112222233 4444444444
Q ss_pred cCChhHHHHHHHHHHhhhhhcCCCCCC-CceeeccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEe
Q 010324 154 VVPPSRLMALIGQALKWQQHQGLLPPG-TQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCS 232 (513)
Q Consensus 154 ~~~~~rl~~l~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~ 232 (513)
++|+.||+.|++||+++|+.+|++|+. +.++++.+ ..+.....|....+.+. .|.++|+.+.||++|+|||+++
T Consensus 169 llP~rRLehLl~qAv~~Q~d~cvyhnsldsvsll~D----h~c~~~qip~qt~qil~-~htdEVWfl~FS~nGkyLAsaS 243 (519)
T KOG0293|consen 169 LLPKRRLEHLLEQAVKYQRDSCVYHNSLDSVSLLSD----HFCGRLQIPSQTWQILQ-DHTDEVWFLQFSHNGKYLASAS 243 (519)
T ss_pred cCChHHHHHHHHHHHHHHHhHhHHhcccchhhhhhh----cccCcccCCchhhhhHh-hCCCcEEEEEEcCCCeeEeecc
Confidence 899999999999999999999999974 23344333 45556677888888876 9999999999999999999999
Q ss_pred cCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEE
Q 010324 233 FDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTS 312 (513)
Q Consensus 233 ~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 312 (513)
.|.+. +||++..... +...+++.+|..+|..+.||||.++|++|+.|..+.+||+.+|.....+..++...+.+
T Consensus 244 kD~Ta-iiw~v~~d~~-----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~s 317 (519)
T KOG0293|consen 244 KDSTA-IIWIVVYDVH-----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSS 317 (519)
T ss_pred CCceE-EEEEEecCcc-----eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcce
Confidence 99999 6999865443 23445788899999999999999999999999999999999999999988777789999
Q ss_pred EEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccc-ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCC
Q 010324 313 LVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH-SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 391 (513)
Q Consensus 313 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 391 (513)
++|.|||..+++|+.|+++..||+ +|.....+++- ...|.+++.++||+++++.+.|..|++|+..+......+
T Consensus 318 c~W~pDg~~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li---- 392 (519)
T KOG0293|consen 318 CAWCPDGFRFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI---- 392 (519)
T ss_pred eEEccCCceeEecCCCCcEEEecC-CcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc----
Confidence 999999999999999999999998 56666666654 356999999999999999999999999998876544333
Q ss_pred CCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEEC-CCCCEEEEEecCceEEEEE
Q 010324 392 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVS-PKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 392 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~g~~dg~i~iwd 470 (513)
....++++++.+.++ .++++.-.+..+++||+....+..-..++..+..+...||. .+..++++|++|+.||||+
T Consensus 393 ---se~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 393 ---SEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred ---cccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 345689999999887 88999999999999999955444444444456667778885 4568999999999999999
Q ss_pred CCCceeeEeeecccCCeEEEEEcC-CCCEEEEEECCCeEEeccC
Q 010324 471 HQSGKLEHLMKVHEKDVIGVTHHP-HRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 471 ~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iWdp 513 (513)
..+|+++..+.||...|++|+|+| +..++||+|+||+||||.|
T Consensus 469 r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 999999999999999999999999 6679999999999999986
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.4e-51 Score=349.70 Aligned_cols=291 Identities=25% Similarity=0.405 Sum_probs=259.7
Q ss_pred cceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE
Q 010324 203 TLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 282 (513)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 282 (513)
.+...+. ||.+.|.|++|+|+|..||+|+.|.++| +||+.+..... +.++|...|.|++|+|||+.||+|
T Consensus 106 rCssS~~-GH~e~Vl~~~fsp~g~~l~tGsGD~TvR-~WD~~TeTp~~--------t~KgH~~WVlcvawsPDgk~iASG 175 (480)
T KOG0271|consen 106 RCSSSIA-GHGEAVLSVQFSPTGSRLVTGSGDTTVR-LWDLDTETPLF--------TCKGHKNWVLCVAWSPDGKKIASG 175 (480)
T ss_pred eeccccC-CCCCcEEEEEecCCCceEEecCCCceEE-eeccCCCCcce--------eecCCccEEEEEEECCCcchhhcc
Confidence 4455665 9999999999999999999999999999 99999876543 566799999999999999999999
Q ss_pred eCCCcEEEEEcCCcceeeecccccccCeEEEEEcc-----CCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEE
Q 010324 283 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-----DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIF 357 (513)
Q Consensus 283 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 357 (513)
+.||+|++||..+|+++..-..+|...|++++|.| ..++|++++.||.++|||+..+.++..+.+|..+|+|+.|
T Consensus 176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw 255 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW 255 (480)
T ss_pred ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEE
Confidence 99999999999999988777679999999999976 6679999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecC------------------------------
Q 010324 358 TNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP------------------------------ 407 (513)
Q Consensus 358 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------------------ 407 (513)
-.+| ++++|+.|++|++|+...|.+.+.+. +|...|+.++.+.
T Consensus 256 GG~g-liySgS~DrtIkvw~a~dG~~~r~lk------GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 256 GGEG-LIYSGSQDRTIKVWRALDGKLCRELK------GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred cCCc-eEEecCCCceEEEEEccchhHHHhhc------ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 8764 89999999999999999988877776 7778888887762
Q ss_pred -----CCCCeEEEEcCCCcEEEEEcc--CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEee
Q 010324 408 -----KNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM 480 (513)
Q Consensus 408 -----~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 480 (513)
+++..+++|+.|.++++|+.. .+.+.... .|..-|+.+.||||++++++++.|..|++||.++|+.+..+
T Consensus 329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt---gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf 405 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT---GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF 405 (480)
T ss_pred HHhhccCcceeEEecCCceEEEecccccccchhhhh---chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh
Confidence 122469999999999999986 22333333 35667999999999999999999999999999999999999
Q ss_pred ecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 481 KVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 481 ~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
++|-++|+.++|+.|.++|++||.|.++++|+.
T Consensus 406 RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 406 RGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred hhccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence 999999999999999999999999999999983
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-50 Score=352.24 Aligned_cols=285 Identities=26% Similarity=0.383 Sum_probs=265.4
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC--CCEEEEEeCCCc
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD--SEMLASGSQDGK 287 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~ 287 (513)
+|-..+|..+.||+|++.|||||.+|.++ +|+..+.... .++.||...|.++.|+|. +..+|||+.||+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~k-vW~~~~~~~~--------~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVK-VWSVPQCNLL--------QTLRGHTSRVGAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCcee-EeecCCccee--------EEEeccccceeeEEEccCCCccceeeeccCCc
Confidence 47888999999999999999999999998 9999886544 367789999999999995 669999999999
Q ss_pred EEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEE
Q 010324 288 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 288 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 367 (513)
+++|++.+..++..+. +|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|.|||..+++|
T Consensus 243 vklw~~~~e~~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 243 VKLWKLSQETPLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred eeeeccCCCcchhhhh-cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 9999999989999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEE
Q 010324 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVA 447 (513)
Q Consensus 368 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 447 (513)
+.|..-+|||++++.++..+. +|...|.++.|+|++ ..+++|+.|+++++||++.... +.....|..-|+.
T Consensus 322 GlD~~~RvWDlRtgr~im~L~------gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~--ly~ipAH~nlVS~ 392 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLA------GHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSE--LYTIPAHSNLVSQ 392 (459)
T ss_pred CccchhheeecccCcEEEEec------ccccceeeEeECCCc-eEEeecCCCCcEEEeeeccccc--ceecccccchhhh
Confidence 999999999999999998887 788999999999998 9999999999999999995544 3333456677899
Q ss_pred EEECC-CCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 448 ACVSP-KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 448 ~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
++|+| .|.+|++++.|+++++|...+..+++.+.||.+.|.+++++|++..++|++.|.++++|.|
T Consensus 393 Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 393 VKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred eEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 99998 7899999999999999999999999999999999999999999999999999999999987
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-49 Score=339.27 Aligned_cols=309 Identities=27% Similarity=0.465 Sum_probs=276.5
Q ss_pred eeccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccC
Q 010324 184 DLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMH 263 (513)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h 263 (513)
.+..+..+.....||....++.++.+ +|...|.|++|+|||+.||+|+.||+|+ +||..+|+... ..+.+|
T Consensus 129 ~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~-lwdpktg~~~g-------~~l~gH 199 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIR-LWDPKTGQQIG-------RALRGH 199 (480)
T ss_pred eEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEE-EecCCCCCccc-------ccccCc
Confidence 44556666777899999999999998 9999999999999999999999999996 99999987553 467789
Q ss_pred CccEEEEEEcC-----CCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC
Q 010324 264 DETVLCIEFSR-----DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 338 (513)
Q Consensus 264 ~~~v~~l~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 338 (513)
...|++++|.| ..++||+++.||.|+|||+..+.++..+. +|+.+|+|+.|--+| ++++|+.|++|++|+...
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD 277 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCc-eEEecCCCceEEEEEccc
Confidence 99999999987 56799999999999999999999999987 999999999998554 899999999999999999
Q ss_pred CceeeEecccccceeEEEEc-----------cC-------------------------CCEEEEEeCCCcEEEEeCCCCc
Q 010324 339 GKLLKEFRGHSSYVNDAIFT-----------ND-------------------------GSRVVTASSDCTVKVWDLKSTD 382 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~-----------~~-------------------------~~~l~~~~~dg~i~iwd~~~~~ 382 (513)
|.+...+++|...|+.++.+ |. +..|++|++|.++.+|+....+
T Consensus 278 G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k 357 (480)
T KOG0271|consen 278 GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK 357 (480)
T ss_pred hhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc
Confidence 99999999999999999977 22 2359999999999999976433
Q ss_pred eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEe
Q 010324 383 CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG 461 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 461 (513)
++.....+|..-|+.+.|+|++ .++++++.|..|++|+.+ |+.+..+.. |-..+..++|+.|.++|++|+
T Consensus 358 -----kpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~lasfRG---Hv~~VYqvawsaDsRLlVS~S 428 (480)
T KOG0271|consen 358 -----KPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKFLASFRG---HVAAVYQVAWSADSRLLVSGS 428 (480)
T ss_pred -----cchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcchhhhhhh---ccceeEEEEeccCccEEEEcC
Confidence 2233345889999999999998 999999999999999998 666666654 456799999999999999999
Q ss_pred cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 462 EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 462 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.|.++++|++++.++...+++|...|.++.|+|||..+++|+.|..+++|.
T Consensus 429 kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999999999996
No 6
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-47 Score=337.56 Aligned_cols=297 Identities=21% Similarity=0.365 Sum_probs=251.3
Q ss_pred CcccceeeeeccccCceeEEEECCCCC-EEEEEecCCeEEEEEecccc--cccccccccccccccc----CCccEEEEEE
Q 010324 200 YPTTLSHTIKFGTKSHAECARFSPDGQ-FLVSCSFDGFIEVVWDYLSG--KLKKDLQYQADETFMM----HDETVLCIEF 272 (513)
Q Consensus 200 ~~~~~~~~~~~~h~~~v~~~~~s~~g~-~la~g~~dg~i~~iwd~~~~--~~~~~~~~~~~~~~~~----h~~~v~~l~~ 272 (513)
.|......+ .|..+|.+++|+|-.. .+|+|+.|-..+ +|++... .......+.......+ ....|++++|
T Consensus 167 I~~~~~kvl--~~~~~V~~~~WnP~~~~llasg~~~s~ar-i~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W 243 (524)
T KOG0273|consen 167 IPSSKAKVL--RHESEVFICAWNPLRDGLLASGSGDSTAR-IWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW 243 (524)
T ss_pred ccccceeec--cCCCceEEEecCchhhhhhhccCCcccee-eeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe
Confidence 444444554 4999999999999665 999999999998 9998741 1111111111111111 3468999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccce
Q 010324 273 SRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV 352 (513)
Q Consensus 273 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 352 (513)
+.+|..||+|+.||.+++|+ .+|..+.++. .|.++|.++.|+.+|++|++++.|+++.+||..++.....+..|..+-
T Consensus 244 n~~G~~LatG~~~G~~riw~-~~G~l~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~ 321 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWN-KDGNLISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA 321 (524)
T ss_pred cCCCCeEEEeecCcEEEEEe-cCchhhhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc
Confidence 99999999999999999999 4577777886 899999999999999999999999999999999999999999888887
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeE
Q 010324 353 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQV 431 (513)
Q Consensus 353 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~ 431 (513)
.++.|-.+ ..+++++.||.|+++.+....++.++. +|.+.|+++.|.|.+ .++++++.|+++++|... +..
T Consensus 322 lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~------GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 322 LDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFI------GHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred cceEEecC-ceEeecCCCceEEEEEecCCCcceeee------cccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcc
Confidence 88899765 469999999999999999888888776 789999999999988 999999999999999976 455
Q ss_pred EEEeecCccCCCcEEEEEECCCC---------CEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEE
Q 010324 432 VKSFSSGKREGGDFVAACVSPKG---------EWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATY 502 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~s~~~---------~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 502 (513)
...+.. |...|..+.|+|.| ..+++++.|++|++||+..+.++..+..|..+|.+++|+|+|+++|+|
T Consensus 394 ~~~l~~---Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsG 470 (524)
T KOG0273|consen 394 VHDLQA---HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASG 470 (524)
T ss_pred hhhhhh---hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEec
Confidence 444443 45678899999875 478999999999999999999999999999999999999999999999
Q ss_pred ECCCeEEecc
Q 010324 503 GEDCTMKLWK 512 (513)
Q Consensus 503 ~~dg~i~iWd 512 (513)
+.||.|.||+
T Consensus 471 s~dg~V~iws 480 (524)
T KOG0273|consen 471 SLDGCVHIWS 480 (524)
T ss_pred CCCCeeEecc
Confidence 9999999997
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.7e-46 Score=311.17 Aligned_cols=288 Identities=24% Similarity=0.405 Sum_probs=261.4
Q ss_pred eeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC
Q 010324 206 HTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285 (513)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 285 (513)
++++ ||.+.|.++.|++|++++++++.||.+ +|||.-+......++. ....|..++|+|.|+++|.|+-|
T Consensus 49 r~Lk-GH~~Ki~~~~ws~Dsr~ivSaSqDGkl-IvWDs~TtnK~haipl--------~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 49 RTLK-GHLNKIYAMDWSTDSRRIVSASQDGKL-IVWDSFTTNKVHAIPL--------PSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred EEec-ccccceeeeEecCCcCeEEeeccCCeE-EEEEcccccceeEEec--------CceeEEEEEECCCCCeEEecCcC
Confidence 5555 999999999999999999999999999 6999988776655543 57889999999999999999999
Q ss_pred CcEEEEEcCCc--c---eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEcc-
Q 010324 286 GKIKVWRIRSG--Q---CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN- 359 (513)
Q Consensus 286 g~i~vwd~~~~--~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~- 359 (513)
+...||++.+. + .+.+...+|.+.+.|+.|.+| ..|++++.|.+..+||+++++.+..|.+|.+.|.++.++|
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~ 197 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS 197 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCC
Confidence 99999999855 2 233333489999999999975 5799999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEEEeecC
Q 010324 360 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSG 438 (513)
Q Consensus 360 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~ 438 (513)
+++.+++|+.|+..++||++.+.+.++|. +|+..|++++|+|++ .-+++|+.|++.++||++. +.+..+. +
T Consensus 198 ~~ntFvSg~cD~~aklWD~R~~~c~qtF~------ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~a~ys-~ 269 (343)
T KOG0286|consen 198 DGNTFVSGGCDKSAKLWDVRSGQCVQTFE------GHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQELAVYS-H 269 (343)
T ss_pred CCCeEEecccccceeeeeccCcceeEeec------ccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEEeeec-c
Confidence 99999999999999999999999999987 889999999999998 8999999999999999994 4555444 4
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 439 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.....++++++||..|++|++|..|.++.+||.-.++.+..+.+|.+.|+++..+|||..++|||.|.+++||.
T Consensus 270 ~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999994
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.7e-41 Score=316.05 Aligned_cols=260 Identities=28% Similarity=0.450 Sum_probs=229.9
Q ss_pred CcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccc--------ccc---------------cccc
Q 010324 200 YPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLK--------KDL---------------QYQA 256 (513)
Q Consensus 200 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~--------~~~---------------~~~~ 256 (513)
.|..+..++. .....++|+.|++|+.+||.|..|..|+ +|.+...++. ..+ ....
T Consensus 366 lpSic~YT~~-nt~~~v~ca~fSddssmlA~Gf~dS~i~-~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 366 LPSICMYTFH-NTYQGVTCAEFSDDSSMLACGFVDSSVR-VWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred CCcEEEEEEE-EcCCcceeEeecCCcchhhccccccEEE-EEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence 3444445544 4445799999999999999999999997 9998753211 111 1112
Q ss_pred ccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEec
Q 010324 257 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 336 (513)
Q Consensus 257 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 336 (513)
...+.||.++|....|+|+.++|++|+.|+++++|.+.+..++..+. +|..+|+.+.|+|.|-+||+++.|++-++|..
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 34688999999999999999999999999999999999999999887 99999999999999999999999999999999
Q ss_pred CCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE
Q 010324 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 416 (513)
....+.+.+.+|.+.|.|+.|+|+++++++|+.|.++++||+.+|..++.|.
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~---------------------------- 574 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT---------------------------- 574 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec----------------------------
Confidence 9999999999999999999999999999999999999999999887655442
Q ss_pred cCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCC
Q 010324 417 NKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR 496 (513)
Q Consensus 417 ~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~ 496 (513)
.|.++|.+++|||+|++|++|++||.|.+||+.+++++..+.+|++.|.++.|+.+|
T Consensus 575 -----------------------GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg 631 (707)
T KOG0263|consen 575 -----------------------GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDG 631 (707)
T ss_pred -----------------------CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCC
Confidence 145678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCeEEeccC
Q 010324 497 NLLATYGEDCTMKLWKP 513 (513)
Q Consensus 497 ~~l~s~~~dg~i~iWdp 513 (513)
..||+||.|.+|++||.
T Consensus 632 ~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 632 NVLASGGADNSVRLWDL 648 (707)
T ss_pred CEEEecCCCCeEEEEEc
Confidence 99999999999999983
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-40 Score=275.28 Aligned_cols=285 Identities=24% Similarity=0.357 Sum_probs=243.8
Q ss_pred ccccCceeEEEECCC-CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcE
Q 010324 210 FGTKSHAECARFSPD-GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKI 288 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~-g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 288 (513)
.+|++.|+.++..+. .+.+.+++.|.++ ++|++....... ..+.+.+.||...|..+..++||++.++++.|+.+
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~i-i~W~L~~dd~~~---G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTI-IVWKLTSDDIKY---GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEE-EEEEeccCcccc---CceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 499999999999986 5688899999999 699998653221 24566888999999999999999999999999999
Q ss_pred EEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccc--ccceeEEEEccC--CCEE
Q 010324 289 KVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH--SSYVNDAIFTND--GSRV 364 (513)
Q Consensus 289 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l 364 (513)
++||+.+|+..+.+. +|...|.+++|+||.+.+++|+.|.+|++|++. +.+..++..+ ...|+|+.|+|+ ..++
T Consensus 88 rlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 88 RLWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPII 165 (315)
T ss_pred EEEEecCCcEEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence 999999999998887 999999999999999999999999999999984 4555555443 789999999997 6799
Q ss_pred EEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCC
Q 010324 365 VTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGG 443 (513)
Q Consensus 365 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~ 443 (513)
++++.|+++++||+++.+....+. +|.+.++.+.++|++ .++++|+.||.+.+||++ ++.+..+. +..
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~~~------gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~lysl~----a~~ 234 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTTFI------GHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNLYSLE----AFD 234 (315)
T ss_pred EEccCCceEEEEccCCcchhhccc------cccccEEEEEECCCC-CEEecCCCCceEEEEEccCCceeEecc----CCC
Confidence 999999999999999887666654 789999999999998 999999999999999998 55544443 355
Q ss_pred cEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc---------cCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 444 DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH---------EKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 444 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h---------~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.|.+++|+|+...|+.+. +..|+|||+.++..+..+... .....+++|+++|..|++|-.|+.|++|.
T Consensus 235 ~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 235 IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred eEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 699999999987777666 455999999999887666421 22356789999999999999999999996
No 10
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.7e-42 Score=307.55 Aligned_cols=300 Identities=24% Similarity=0.412 Sum_probs=263.6
Q ss_pred cccccCcccceeeeeccccCceeEEEECC-CCCEEEEEecCCeEEEEEeccc-cccccccccccccccccCCccEEEEEE
Q 010324 195 DVEDMYPTTLSHTIKFGTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLS-GKLKKDLQYQADETFMMHDETVLCIEF 272 (513)
Q Consensus 195 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~ 272 (513)
......|....+++. ||+..|+++.|.| .+.+|++|+.|+.|+ ||++-. +.++ +++.||..+|.+++|
T Consensus 197 ~~rc~~Pkk~~~~~~-gH~kgvsai~~fp~~~hLlLS~gmD~~vk-lW~vy~~~~~l--------rtf~gH~k~Vrd~~~ 266 (503)
T KOG0282|consen 197 EERCYLPKKLSHNLS-GHTKGVSAIQWFPKKGHLLLSGGMDGLVK-LWNVYDDRRCL--------RTFKGHRKPVRDASF 266 (503)
T ss_pred cceeeccHhheeecc-CCccccchhhhccceeeEEEecCCCceEE-EEEEecCccee--------hhhhcchhhhhhhhc
Confidence 345567888899988 9999999999999 899999999999996 999876 4433 467789999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCC-CEEEEeeCCCcEEEEecCCCceeeEecccccc
Q 010324 273 SRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKLLKEFRGHSSY 351 (513)
Q Consensus 273 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 351 (513)
+++|..+++++.|+.+++||+++|+++.++. ....+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.
T Consensus 267 s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 267 NNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA 344 (503)
T ss_pred cccCCeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh
Confidence 9999999999999999999999999999986 56788999999988 88999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-
Q 010324 352 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ- 430 (513)
Q Consensus 352 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~- 430 (513)
|..+.|-++|+++++++.|++++||+.+....+.....+ ......++..+|.+ ..+++-+.+..|.++.....
T Consensus 345 i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~-----~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 345 ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP-----EMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch-----hhccCcceecCCCC-CeehhhccCceEEEEeccccc
Confidence 999999999999999999999999999887655544322 33466788899988 89999999999999997622
Q ss_pred --EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCC-CCEEEEEECCCe
Q 010324 431 --VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH-RNLLATYGEDCT 507 (513)
Q Consensus 431 --~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~ 507 (513)
..+....++...+....+.|||||++|++|+.||.+++||.++-+++..+++|++++..+.|+|. ...+||||.||.
T Consensus 419 r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~ 498 (503)
T KOG0282|consen 419 RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGL 498 (503)
T ss_pred ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCce
Confidence 22233334445667788999999999999999999999999999999999999999999999994 568999999999
Q ss_pred EEecc
Q 010324 508 MKLWK 512 (513)
Q Consensus 508 i~iWd 512 (513)
|++|+
T Consensus 499 Ikiwd 503 (503)
T KOG0282|consen 499 IKIWD 503 (503)
T ss_pred eEecC
Confidence 99997
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-41 Score=288.47 Aligned_cols=283 Identities=25% Similarity=0.436 Sum_probs=258.9
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
+|...|+.+-|+|+-..+++++.|++|+ +||..+++... .+.||.+.|.+++|+..|+++++++.|=.+++
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tik-v~D~~tg~~e~--------~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIK-VFDTETGELER--------SLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEE-EEEccchhhhh--------hhhccccceeEEEEecCccEEEecCCccchhh
Confidence 8999999999999999999999999997 99999998754 56679999999999999999999999988999
Q ss_pred EEcCC-cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC
Q 010324 291 WRIRS-GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS 369 (513)
Q Consensus 291 wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 369 (513)
||..+ .++++... +|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|...|..+..+.||..+++++.
T Consensus 177 Wd~~~~~~c~ks~~-gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLI-GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eeHHHHHHHHHHhc-CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 99987 45566665 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC--------------CCCeEEEEcCCCcEEEEEcc-CeEEEE
Q 010324 370 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK--------------NPDHIVVCNKTSSIYIMTLQ-GQVVKS 434 (513)
Q Consensus 370 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~l~~~~~~~~i~i~d~~-~~~~~~ 434 (513)
|.++++|-+.++++...+. .|+.++.+++|.|. +..++.+++.|++|++||+. +..+..
T Consensus 256 dqtl~vW~~~t~~~k~~lR------~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELR------EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred CceEEEEEeccchhhhhhh------ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 9999999999987665554 67788888888764 22589999999999999998 666666
Q ss_pred eecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+.. |...|..++|+|.|+||+++.+|+++++||++++++...+.+|..-|++++|+.+..+++||+-|.++++|.
T Consensus 330 L~g---hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 330 LVG---HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred Eec---ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 655 567899999999999999999999999999999999999999999999999999999999999999999996
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.3e-41 Score=279.57 Aligned_cols=284 Identities=23% Similarity=0.349 Sum_probs=248.4
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 289 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 289 (513)
.||++.|.++.|+|+|.+||+|+.|..| ++|++..... ..-.+.+|.+.|..+.|.+|++.+++++.|.+|+
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I-~LWnv~gdce-------N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAI-VLWNVYGDCE-------NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceE-EEEecccccc-------ceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 4999999999999999999999999999 6999654321 1124557999999999999999999999999999
Q ss_pred EEEcCCcceeeecccccccCeEEEEEccCCC-EEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEe
Q 010324 290 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGS-QILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS 368 (513)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 368 (513)
.||+++|+.++++. .|...|+++.-+.-|. ++.+|+.||++++||+++...++++. .+..++++.|..++..+++|+
T Consensus 116 ~wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 116 GWDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred EEecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecc
Confidence 99999999999997 8999999998555454 56688999999999999998888775 345699999999999999999
Q ss_pred CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc----CeE-EEEeecCc-cCC
Q 010324 369 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ----GQV-VKSFSSGK-REG 442 (513)
Q Consensus 369 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~----~~~-~~~~~~~~-~~~ 442 (513)
-|+.|++||++......++. +|..+|+.+..++.+ ..+.+-+.|.++++||++ +.. +..+.... ..+
T Consensus 194 Idn~ikvWd~r~~d~~~~ls------Gh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe 266 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDGLYTLS------GHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE 266 (338)
T ss_pred ccCceeeeccccCcceEEee------cccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence 99999999999998888876 888999999999998 899999999999999997 333 44443332 123
Q ss_pred CcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 443 GDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 443 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
.....++|+|++..+.+|+.|..+++||..+...+..+++|.+.|++++|+|...+|.+++.|.+|.+
T Consensus 267 knlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 267 KNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred hhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 34557899999999999999999999999999999999999999999999999999999999999875
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.1e-42 Score=298.53 Aligned_cols=265 Identities=25% Similarity=0.364 Sum_probs=239.4
Q ss_pred ccCcccccccccccCcccceeeeeccccCceeEEEECCC--CCEEEEEecCCeEEEEEeccccccccccccccccccccC
Q 010324 186 FRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPD--GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMH 263 (513)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h 263 (513)
..+.......+|........+++. ||.+.|.++.|+|. +..+|+|+.||+++ +|++.+...+. .+.||
T Consensus 191 aT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk-lw~~~~e~~l~--------~l~gH 260 (459)
T KOG0272|consen 191 ATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVK-LWKLSQETPLQ--------DLEGH 260 (459)
T ss_pred EEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCcee-eeccCCCcchh--------hhhcc
Confidence 344455566778777777788887 99999999999996 67999999999998 99998875544 55679
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceee
Q 010324 264 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK 343 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 343 (513)
...|..++|+|+|++|+|++.|.+-++||++++..+.... +|...|.+++|+|||..+++|+.|..-+|||+++|.++.
T Consensus 261 ~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im 339 (459)
T KOG0272|consen 261 LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM 339 (459)
T ss_pred hhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEecCCCceeeccCccchhheeecccCcEEE
Confidence 9999999999999999999999999999999999877766 999999999999999999999999999999999999999
Q ss_pred EecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEE
Q 010324 344 EFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 423 (513)
Q Consensus 344 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 423 (513)
.+.+|..+|.+++|+|+|..++||+.|++++|||++....+.++. +|..-|+.++|.|..+.++++++.|++++
T Consensus 340 ~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip------AH~nlVS~Vk~~p~~g~fL~TasyD~t~k 413 (459)
T KOG0272|consen 340 FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP------AHSNLVSQVKYSPQEGYFLVTASYDNTVK 413 (459)
T ss_pred EecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc------cccchhhheEecccCCeEEEEcccCccee
Confidence 999999999999999999999999999999999999988877776 78889999999998889999999999999
Q ss_pred EEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 424 IMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 424 i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
+|... ...++.+.. |.+.|.++.+++++.++++++.|.++++|.
T Consensus 414 iWs~~~~~~~ksLaG---He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 414 IWSTRTWSPLKSLAG---HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eecCCCcccchhhcC---CccceEEEEeccCCceEEEeccCceeeecc
Confidence 99988 445555554 567899999999999999999999999995
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.6e-40 Score=267.86 Aligned_cols=270 Identities=23% Similarity=0.430 Sum_probs=237.7
Q ss_pred CEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc--eeeecc
Q 010324 226 QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ--CLRRLE 303 (513)
Q Consensus 226 ~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~ 303 (513)
-+||++|.|.+|| +|...+|.....++. ..+.|+.+...|+++.||+++. ..|++||+.++. ++.++.
T Consensus 11 viLvsA~YDhTIR-fWqa~tG~C~rTiqh--------~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e 80 (311)
T KOG0315|consen 11 VILVSAGYDHTIR-FWQALTGICSRTIQH--------PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFE 80 (311)
T ss_pred eEEEeccCcceee-eeehhcCeEEEEEec--------CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEe
Confidence 4899999999999 999999998877663 4678999999999999999874 589999999876 477776
Q ss_pred cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 010324 304 RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDC 383 (513)
Q Consensus 304 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 383 (513)
+|...|+++.|..+|+.+++|++||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+....+
T Consensus 81 -~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 81 -GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred -ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence 899999999999999999999999999999999966665555 679999999999999999999999999999998876
Q ss_pred eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe----EEEEeecCccCCCcEEEEEECCCCCEEEE
Q 010324 384 LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ----VVKSFSSGKREGGDFVAACVSPKGEWIYC 459 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 459 (513)
...+.+. ...++.++...|++ .+++.+...|..++|++-+. .+..+.....+.+.+..+.+|||+++|++
T Consensus 159 ~~~liPe-----~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 159 THELIPE-----DDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred ccccCCC-----CCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe
Confidence 6665543 34789999999998 99999999999999998632 33344444567788999999999999999
Q ss_pred EecCceEEEEECCCc-eeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 460 VGEDRNLYCFSHQSG-KLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 460 g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
++.|.+++||+..+. +....+.+|...+.+.+||.|+.+|++|+.|+.+++|++
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 999999999999987 677788999999999999999999999999999999985
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.8e-41 Score=292.01 Aligned_cols=295 Identities=23% Similarity=0.390 Sum_probs=252.2
Q ss_pred cCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCE
Q 010324 199 MYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM 278 (513)
Q Consensus 199 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 278 (513)
.++.+..+.-....+..|..+.|.|+|+.|++|+..|.+. +|+...-. ....+..|..+|.++.|+++|.+
T Consensus 82 ~~~tKf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFt-LWNg~~fn--------FEtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 82 AFTTKFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFT-LWNGTSFN--------FETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred ccccceEeccccccccceeeEEEcCCCceeEeecccccEE-EecCceee--------HHHHhhhhcccceeEEEccCCCE
Confidence 3444555544345567899999999999999999999996 99974322 22244569999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEc
Q 010324 279 LASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT 358 (513)
Q Consensus 279 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 358 (513)
+++|+.+|.|++|+..- ..++.+...|...|++++|+|+...|++++.||+|+|||....+....+.+|.-.|.+++|+
T Consensus 153 miSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred EEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence 99999999999999654 34555654666999999999999999999999999999999999888999999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecC
Q 010324 359 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSG 438 (513)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 438 (513)
|....+++++.|..|++||.+++.++.++. .|...|..+.|.|++ +++++++.|..++++|++ ..+.+...
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl~tlh------~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR--~mkEl~~~ 302 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCLATLH------GHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIR--TMKELFTY 302 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchhhhhh------hccceEEEEEEcCCC-CeeEEccCCceEEEEehh--HhHHHHHh
Confidence 999999999999999999999999998876 788899999999998 999999999999999999 22333333
Q ss_pred ccCCCcEEEEEECCC-CCEEEEEecCceEEEEECCCceeeEee-ecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 439 KREGGDFVAACVSPK-GEWIYCVGEDRNLYCFSHQSGKLEHLM-KVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 439 ~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
..|...++++.|+|- ...+.+|+.||.|..|.+...+++..+ .+|.+.|++++|+|-|.+|++|+.|.++++|.
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 346677999999995 567788899999999999855555444 58999999999999999999999999999994
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.7e-39 Score=286.62 Aligned_cols=329 Identities=17% Similarity=0.293 Sum_probs=272.8
Q ss_pred cCCCCCCCceeeccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccc
Q 010324 174 QGLLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQ 253 (513)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~ 253 (513)
.|-+.+..+|.+..+..++.....+-.|-+...+.+ .|..-|.|+.|+|||.++|+++.||++ ++||-.+|+....+.
T Consensus 152 s~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r-~HskFV~~VRysPDG~~Fat~gsDgki-~iyDGktge~vg~l~ 229 (603)
T KOG0318|consen 152 SVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFR-EHSKFVNCVRYSPDGSRFATAGSDGKI-YIYDGKTGEKVGELE 229 (603)
T ss_pred eeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccc-ccccceeeEEECCCCCeEEEecCCccE-EEEcCCCccEEEEec
Confidence 355666677888777777777777777888888887 888899999999999999999999999 699999999887665
Q ss_pred cccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccc--cCeEEEEEccCCCEEEEeeCCCcE
Q 010324 254 YQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHS--EGVTSLVFSRDGSQILSTSFDSTA 331 (513)
Q Consensus 254 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i 331 (513)
. -.+|.+.|.+++|+||+..+++++.|.+++|||+.+.++++++..+.. ..-..+.|. +..|++.+.+|+|
T Consensus 230 ~-----~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~i 302 (603)
T KOG0318|consen 230 D-----SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTI 302 (603)
T ss_pred C-----CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEE
Confidence 3 235999999999999999999999999999999999999998874433 344556675 5689999999999
Q ss_pred EEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEee-----------cCCC---------
Q 010324 332 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTF-----------KPPP--------- 391 (513)
Q Consensus 332 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----------~~~~--------- 391 (513)
.+++...+..+..+.+|...|+++..+|++++|++|+.||.|.-||..++..-+.. ....
T Consensus 303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~ 382 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGW 382 (603)
T ss_pred EEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEec
Confidence 99999999999999999999999999999999999999999999998765422110 0000
Q ss_pred ------------CCC-------------------------------------------CCCceeeEEEecCCCCCeEEEE
Q 010324 392 ------------PLR-------------------------------------------GGDASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 392 ------------~~~-------------------------------------------~~~~~v~~~~~~~~~~~~l~~~ 416 (513)
... .......+++++|++ ..+++|
T Consensus 383 Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVG 461 (603)
T KOG0318|consen 383 DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVG 461 (603)
T ss_pred CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC-CEEEEe
Confidence 000 001234567777776 899999
Q ss_pred cCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeE-eeecccCCeEEEEEcCC
Q 010324 417 NKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEH-LMKVHEKDVIGVTHHPH 495 (513)
Q Consensus 417 ~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~p~ 495 (513)
+.|+.+++|.+.+..+........+.++++.+++|||+.||++|...+.+.+||+.+.+... .+.-|+..|++++|+|+
T Consensus 462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~ 541 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN 541 (603)
T ss_pred cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC
Confidence 99999999999976655554555678899999999999999999999999999999887643 34459999999999999
Q ss_pred CCEEEEEECCCeEEecc
Q 010324 496 RNLLATYGEDCTMKLWK 512 (513)
Q Consensus 496 ~~~l~s~~~dg~i~iWd 512 (513)
..++||||-|..|.||+
T Consensus 542 n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 542 NKLVATGSLDTNVIIYS 558 (603)
T ss_pred ceEEEeccccceEEEEE
Confidence 99999999999999996
No 17
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.9e-39 Score=274.30 Aligned_cols=292 Identities=20% Similarity=0.343 Sum_probs=251.9
Q ss_pred eeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC
Q 010324 206 HTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285 (513)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 285 (513)
+++. .|++.|.+++.+|+.+++|||+.|..- ++|+..++.... .+.+|..+|+++.|+.+|.+||||+.+
T Consensus 58 ~tF~-~H~~svFavsl~P~~~l~aTGGgDD~A-flW~~~~ge~~~--------eltgHKDSVt~~~FshdgtlLATGdms 127 (399)
T KOG0296|consen 58 VTFD-KHTDSVFAVSLHPNNNLVATGGGDDLA-FLWDISTGEFAG--------ELTGHKDSVTCCSFSHDGTLLATGDMS 127 (399)
T ss_pred eehh-hcCCceEEEEeCCCCceEEecCCCceE-EEEEccCCccee--------EecCCCCceEEEEEccCceEEEecCCC
Confidence 4444 999999999999999999999999999 699999988554 445799999999999999999999999
Q ss_pred CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEE
Q 010324 286 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVV 365 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 365 (513)
|.|+||+..++.....+. ..-..+.=+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|++++
T Consensus 128 G~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 128 GKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred ccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence 999999999999888886 5667788999999999999999999999999999888999999999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeEeecCCCCCC---------------------------------------------CCCcee
Q 010324 366 TASSDCTVKVWDLKSTDCLQTFKPPPPLR---------------------------------------------GGDASV 400 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~v 400 (513)
++..||+|++||+.++.++..+....... .+...+
T Consensus 207 tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 207 TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence 99999999999999999887766211000 011112
Q ss_pred eEEEecCCC--CCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeE
Q 010324 401 NSVHLFPKN--PDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEH 478 (513)
Q Consensus 401 ~~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 478 (513)
.++.+.|.. -.+.++|+-||+|.+||+....++.... +...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.
T Consensus 287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~ 362 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKF 362 (399)
T ss_pred hhhhhcccccccchhhcccccceEEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeeeccccceEE
Confidence 222222222 1467889999999999999777766665 345699999988 7899999999999999999999999
Q ss_pred eeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 479 LMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 479 ~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.+.+|...|.+++++|++++++|+|.|++.+|++
T Consensus 363 ~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 363 TYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred EEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 9999999999999999999999999999999986
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-38 Score=258.88 Aligned_cols=296 Identities=19% Similarity=0.284 Sum_probs=257.5
Q ss_pred eccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCC
Q 010324 185 LFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD 264 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~ 264 (513)
+.....+.....|+.....+.++|+ ...+.|+.+...|+++.||+|+.- .|| +||+.++... +..++.+|.
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~q-hvR-lyD~~S~np~------Pv~t~e~h~ 83 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGNQ-HVR-LYDLNSNNPN------PVATFEGHT 83 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccCC-eeE-EEEccCCCCC------ceeEEeccC
Confidence 3344445556678889999999997 777899999999999999999854 688 9999987643 445677899
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeE
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE 344 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 344 (513)
..|+++.|..+|+++++|+.||+++|||++...+.+.+. +.++|+++..+|+...|++|..+|.|++||+.+..+...
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 999999999999999999999999999999977766664 789999999999999999999999999999988866655
Q ss_pred ec-ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEE
Q 010324 345 FR-GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 423 (513)
Q Consensus 345 ~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 423 (513)
+- ....+|.++...|||.+++.+...|+.++|++-+......+.+...+..|.+.+..+.++|++ +++++++.|.+++
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~ 240 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVK 240 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC-cEEEeecCCceEE
Confidence 54 345689999999999999999999999999999887777788888888999999999999998 9999999999999
Q ss_pred EEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEc
Q 010324 424 IMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHH 493 (513)
Q Consensus 424 i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 493 (513)
+|+.++. ++.-.....+...+..++||.||+||++|+.|+.+++|++..++.+..+.+|.....|++.+
T Consensus 241 iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 241 IWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9999976 33333333456789999999999999999999999999999999999999999988888764
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-38 Score=259.41 Aligned_cols=284 Identities=23% Similarity=0.388 Sum_probs=235.6
Q ss_pred eeeeccccCceeEEEECCC-CCEEEEEecCCeEEEEEeccccccccccccccccc-cccCCccEEEEEEcCCCCEEEEEe
Q 010324 206 HTIKFGTKSHAECARFSPD-GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADET-FMMHDETVLCIEFSRDSEMLASGS 283 (513)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~-g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~ 283 (513)
+.++ +|+++++.++|+|. |..||+|+.|..|+ +|+...+.... .... -.+|...|.+++|+|.|++|++++
T Consensus 8 ~~~~-gh~~r~W~~awhp~~g~ilAscg~Dk~vr-iw~~~~~~s~~-----ck~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 8 QKLS-GHKDRVWSVAWHPGKGVILASCGTDKAVR-IWSTSSGDSWT-----CKTVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred Eeec-CCCCcEEEEEeccCCceEEEeecCCceEE-EEecCCCCcEE-----EEEeccccchheeeeeeecCCCcEEEEee
Confidence 4444 99999999999998 99999999999998 99987532211 1111 135999999999999999999999
Q ss_pred CCCcEEEEEcCCc--ceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC---ceeeEecccccceeEEEEc
Q 010324 284 QDGKIKVWRIRSG--QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG---KLLKEFRGHSSYVNDAIFT 358 (513)
Q Consensus 284 ~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~ 358 (513)
.|.++.||.-..+ +++.++. +|...|.+++|+++|++||+++.|..|-||.+..+ ++...++.|...|..+.|+
T Consensus 81 FD~t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred ccceEEEeecCCCceeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 9999999986544 5777887 99999999999999999999999999999998754 5677889999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCC---CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEe
Q 010324 359 NDGSRVVTASSDCTVKVWDLKS---TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSF 435 (513)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 435 (513)
|....|++++.|.+|++|+-.. ..+..++. +|...|.++.|.+.+ ..+++++.|+++++|....
T Consensus 160 Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~------g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~------ 226 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD------GHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYT------ 226 (312)
T ss_pred CCcceeEEeccCCeEEEEeecCCCCeeEEEEec------CccceEEEEEecCCC-ceEEEecCCcceEeeeecc------
Confidence 9999999999999999998662 24556655 677899999999988 8999999999999998651
Q ss_pred ecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce------e-eEeeecccCCeEEEEEcCC-CCEEEEEECCCe
Q 010324 436 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK------L-EHLMKVHEKDVIGVTHHPH-RNLLATYGEDCT 507 (513)
Q Consensus 436 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~------~-~~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~ 507 (513)
.....+...+..+.|. ...|++++.|+.|++|....+. + ...-..|...|++++|+|. .+.|++||+||.
T Consensus 227 ~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~ 304 (312)
T KOG0645|consen 227 DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI 304 (312)
T ss_pred CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence 1112244567788888 5589999999999999876431 1 1233578899999999994 789999999999
Q ss_pred EEecc
Q 010324 508 MKLWK 512 (513)
Q Consensus 508 i~iWd 512 (513)
|++|.
T Consensus 305 v~~W~ 309 (312)
T KOG0645|consen 305 VNFWE 309 (312)
T ss_pred EEEEE
Confidence 99996
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.8e-39 Score=273.73 Aligned_cols=290 Identities=23% Similarity=0.377 Sum_probs=252.4
Q ss_pred CcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEE
Q 010324 200 YPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 279 (513)
Q Consensus 200 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 279 (513)
.|-++.+.+. +|.+.|.|+++.|...++++|+.|++++ |||+.+|++.. ++.||...|..+++|+-..|+
T Consensus 139 apwKl~rVi~-gHlgWVr~vavdP~n~wf~tgs~Drtik-IwDlatg~Lkl--------tltGhi~~vr~vavS~rHpYl 208 (460)
T KOG0285|consen 139 APWKLYRVIS-GHLGWVRSVAVDPGNEWFATGSADRTIK-IWDLATGQLKL--------TLTGHIETVRGVAVSKRHPYL 208 (460)
T ss_pred Ccceehhhhh-hccceEEEEeeCCCceeEEecCCCceeE-EEEcccCeEEE--------eecchhheeeeeeecccCceE
Confidence 3555666676 9999999999999999999999999998 99999998765 455799999999999999999
Q ss_pred EEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEcc
Q 010324 280 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 359 (513)
Q Consensus 280 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 359 (513)
++++.|+.|+.||++..+.++.+. +|-+.|.|++.+|.-+.|++|+.|.++++||+++...+..+.+|..+|.++.+.|
T Consensus 209 Fs~gedk~VKCwDLe~nkvIR~Yh-GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNKVIRHYH-GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP 287 (460)
T ss_pred EEecCCCeeEEEechhhhhHHHhc-cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec
Confidence 999999999999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecC
Q 010324 360 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSG 438 (513)
Q Consensus 360 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~ 438 (513)
-...+++|+.|++|++||++.++...++. .|...+.+++.+|.. ..+++++ ...|+-|++. +..+..+.
T Consensus 288 ~dpqvit~S~D~tvrlWDl~agkt~~tlt------~hkksvral~lhP~e-~~fASas-~dnik~w~~p~g~f~~nls-- 357 (460)
T KOG0285|consen 288 TDPQVITGSHDSTVRLWDLRAGKTMITLT------HHKKSVRALCLHPKE-NLFASAS-PDNIKQWKLPEGEFLQNLS-- 357 (460)
T ss_pred CCCceEEecCCceEEEeeeccCceeEeee------cccceeeEEecCCch-hhhhccC-CccceeccCCccchhhccc--
Confidence 88889999999999999999999887776 677899999999975 5555554 4578999987 44444432
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeec--------ccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 439 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV--------HEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--------h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
.+...+.+++...|| ++++|+++|.+.+||.++|...+.... ....|.+.+|...|..|++|..|.+|++
T Consensus 358 -gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~ 435 (460)
T KOG0285|consen 358 -GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKM 435 (460)
T ss_pred -cccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEE
Confidence 345667888887776 788999999999999999865544421 2346899999999999999999999999
Q ss_pred cc
Q 010324 511 WK 512 (513)
Q Consensus 511 Wd 512 (513)
|+
T Consensus 436 ~k 437 (460)
T KOG0285|consen 436 YK 437 (460)
T ss_pred Ee
Confidence 96
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.1e-38 Score=278.12 Aligned_cols=278 Identities=17% Similarity=0.347 Sum_probs=246.4
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 292 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd 292 (513)
+..|++++|+.+|..||+|+.||.++ +|+...+ +.. ++..|.++|.++.|+.+|.+|++++.||++.+||
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~r-iw~~~G~-l~~--------tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd 304 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEAR-IWNKDGN-LIS--------TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWD 304 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEE-EEecCch-hhh--------hhhccCCceEEEEEcCCCCEEEeccCCccEEEEe
Confidence 45799999999999999999999998 9997643 333 3344999999999999999999999999999999
Q ss_pred cCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCc
Q 010324 293 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCT 372 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 372 (513)
..+|...+.+. -|..+-..+.|-. ...+++++.||.|+++.+....++.++.+|.+.|.++.|+|.|..|++++.|++
T Consensus 305 ~~~g~~~q~f~-~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 305 AHTGTVKQQFE-FHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred ccCceEEEeee-eccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence 99999888887 6777767889974 457899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCC--------CeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCC
Q 010324 373 VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP--------DHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGG 443 (513)
Q Consensus 373 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~ 443 (513)
++||+.....+...+. +|...|..+.|+|.++ ..+++++.|++|++||+. +..+..+.. |..
T Consensus 383 lkiWs~~~~~~~~~l~------~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k---H~~ 453 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQ------AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK---HQE 453 (524)
T ss_pred eEeeecCCCcchhhhh------hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc---CCC
Confidence 9999988877666654 7888999999998753 579999999999999998 666666544 567
Q ss_pred cEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 444 DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 444 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+|.+++|+|+|+++++|+.||.|.+|+.++++..+.+.+ .+.|..++|+.+|+.|..+-.||.+++-|
T Consensus 454 pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 899999999999999999999999999999999999875 45699999999999999999999998754
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5e-38 Score=304.43 Aligned_cols=296 Identities=30% Similarity=0.525 Sum_probs=255.9
Q ss_pred eeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
...+...|...|.|+.|+|+|+++++++.|+.++ +|+....+. .....+.+|...|.+++|+|+++++++++.
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~-~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIR-IWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEE-Eeecccccc------hhhccccccccceeeeEECCCCcEEEEecC
Confidence 3444434588999999999999999999999996 999966552 112234679999999999999999999999
Q ss_pred CCcEEEEEc-CCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCE
Q 010324 285 DGKIKVWRI-RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSR 363 (513)
Q Consensus 285 dg~i~vwd~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 363 (513)
|++|++||+ ..+..++++. +|...|++++|+|+|+.+++|+.|++|++||+++++++..+.+|.+.|++++|++++++
T Consensus 224 D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~ 302 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL 302 (456)
T ss_pred CceEEEeeccCCCeEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCE
Confidence 999999999 5557888887 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCc--eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCcc
Q 010324 364 VVTASSDCTVKVWDLKSTD--CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKR 440 (513)
Q Consensus 364 l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~ 440 (513)
+++++.|+.|++||+.++. +...+.... ... +++++.|+|++ .++++++.|+.+++||+. +.....+..+..
T Consensus 303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~---~~~-~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSKLCLKLLSGAE---NSA-PVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred EEEcCCCccEEEEECCCCceeeeecccCCC---CCC-ceeEEEECCCC-cEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 9999999999999999998 344444221 222 68999999988 999999999999999999 556666555443
Q ss_pred CCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc-cCCeEEEEEcCCCCEEEEEE--CCCeEEeccC
Q 010324 441 EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH-EKDVIGVTHHPHRNLLATYG--EDCTMKLWKP 513 (513)
Q Consensus 441 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~~--~dg~i~iWdp 513 (513)
....+.+...++.+.++++|+.|+.|++||..++..+..+.+| ...+..+.|+|..+++++++ .|+.+++|+.
T Consensus 378 ~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 378 LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred cceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 2234556666889999999999999999999999999999999 88999999999999999998 7999999974
No 23
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9e-37 Score=282.30 Aligned_cols=286 Identities=31% Similarity=0.582 Sum_probs=251.5
Q ss_pred eeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC
Q 010324 206 HTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285 (513)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 285 (513)
++++ +|.+.|++++|+|++++|++++.||.+. +|++.+++... .+.+|...+.++.|+|+++++++++.|
T Consensus 3 ~~~~-~h~~~i~~~~~~~~~~~l~~~~~~g~i~-i~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~~ 72 (289)
T cd00200 3 RTLK-GHTGGVTCVAFSPDGKLLATGSGDGTIK-VWDLETGELLR--------TLKGHTGPVRDVAASADGTYLASGSSD 72 (289)
T ss_pred hHhc-ccCCCEEEEEEcCCCCEEEEeecCcEEE-EEEeeCCCcEE--------EEecCCcceeEEEECCCCCEEEEEcCC
Confidence 3455 8999999999999999999999999996 99998776333 334588899999999999999999999
Q ss_pred CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEE
Q 010324 286 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVV 365 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 365 (513)
|.|++||+.+++....+. .|...+.++.|+|++.++++++.||.|.+||+++++....+..|...+.++.|+|++.+++
T Consensus 73 ~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 73 KTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA 151 (289)
T ss_pred CeEEEEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEE
Confidence 999999999888777776 7888999999999988888888899999999998998888888999999999999988888
Q ss_pred EEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEEEeecCccCCCc
Q 010324 366 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKREGGD 444 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~~~ 444 (513)
+++.||.|++||+++++....+. .+...+.++.|+|++ ..+++++.++.+.+||++. .....+.. +...
T Consensus 152 ~~~~~~~i~i~d~~~~~~~~~~~------~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~ 221 (289)
T cd00200 152 SSSQDGTIKLWDLRTGKCVATLT------GHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKCLGTLRG---HENG 221 (289)
T ss_pred EEcCCCcEEEEEccccccceeEe------cCccccceEEECCCc-CEEEEecCCCcEEEEECCCCceecchhh---cCCc
Confidence 88889999999999887776665 456689999999987 6788888899999999984 44444322 3457
Q ss_pred EEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 445 FVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 445 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+.+++|+|++.++++++.+|.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++|+
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 89999999999998888899999999999999999999999999999999999999999999999997
No 24
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=5.9e-37 Score=257.49 Aligned_cols=297 Identities=22% Similarity=0.350 Sum_probs=243.3
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEecccc----cccc------ccccccccccccCCccEEEEEEcCCCCEE
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSG----KLKK------DLQYQADETFMMHDETVLCIEFSRDSEML 279 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~----~~~~------~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 279 (513)
..|++++.+.+|||||.++|+|+.|.+|+ |.|+..- .... ....+..+++..|...|+++.|+|....|
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIK-ildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIK-ILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEE-EeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 48999999999999999999999999998 9998621 1000 01123456888999999999999999999
Q ss_pred EEEeCCCcEEEEEcCCcceeeecc-cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe---cccccceeEE
Q 010324 280 ASGSQDGKIKVWRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDA 355 (513)
Q Consensus 280 ~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~ 355 (513)
++|+.|++|+++|+......+.++ .....+|.++.|+|.|.+|++|....++++||+++.++...- ..|.+.|+++
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V 267 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV 267 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence 999999999999997654433332 135678999999999999999999999999999998876544 3588999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEE
Q 010324 356 IFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKS 434 (513)
Q Consensus 356 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~ 434 (513)
.+++.|+..++++.||.|++||--+++++.++.... ....|.+..|..++ .++++++.|..+++|.+. ++.+..
T Consensus 268 ~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH----~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 268 RYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH----GGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred EecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc----CCceeeeEEEccCC-eEEeecCCcceeeeeeecCCceEEE
Confidence 999999999999999999999999999999887432 34567777777766 999999999999999998 677777
Q ss_pred eecCccCC--CcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeee-cccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 435 FSSGKREG--GDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMK-VHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 435 ~~~~~~~~--~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
+......+ ..-+...|.....|++.-. ..+.+.-||.+++..+..+. +|.+.+..+.-+|.+.-+++||+|-++|+
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 66542211 1234566777777887776 46789999999987765553 89999999999999999999999999999
Q ss_pred cc
Q 010324 511 WK 512 (513)
Q Consensus 511 Wd 512 (513)
|-
T Consensus 423 Wy 424 (430)
T KOG0640|consen 423 WY 424 (430)
T ss_pred ee
Confidence 94
No 25
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-37 Score=250.63 Aligned_cols=287 Identities=21% Similarity=0.367 Sum_probs=250.3
Q ss_pred cccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEE
Q 010324 201 PTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280 (513)
Q Consensus 201 ~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 280 (513)
|....+.+. .|.++|.++.|+-||+|.++++.|.+++ +|+...|.+++++ .+|...|..++.+.|+..++
T Consensus 6 ptkr~~~l~-~~qgaV~avryN~dGnY~ltcGsdrtvr-LWNp~rg~liktY--------sghG~EVlD~~~s~Dnskf~ 75 (307)
T KOG0316|consen 6 PTKRLSILD-CAQGAVRAVRYNVDGNYCLTCGSDRTVR-LWNPLRGALIKTY--------SGHGHEVLDAALSSDNSKFA 75 (307)
T ss_pred cchhceeec-ccccceEEEEEccCCCEEEEcCCCceEE-eecccccceeeee--------cCCCceeeeccccccccccc
Confidence 444556665 8999999999999999999999999998 9999998877644 56999999999999999999
Q ss_pred EEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC--ceeeEecccccceeEEEEc
Q 010324 281 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG--KLLKEFRGHSSYVNDAIFT 358 (513)
Q Consensus 281 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~ 358 (513)
+|+.|..+.+||+.+|+.++++. +|...|+.++|+.+...+++|+.|.++++||.++. ++++.+......|.++..+
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec
Confidence 99999999999999999999997 99999999999999999999999999999999765 6788888888889999887
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeec
Q 010324 359 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSS 437 (513)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~ 437 (513)
+..+++|+.||+++.||++.|+....+- ..+|+++++++++ +..++++.++++++.|-. |+.+..+..
T Consensus 155 --~heIvaGS~DGtvRtydiR~G~l~sDy~--------g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 155 --EHEIVAGSVDGTVRTYDIRKGTLSSDYF--------GHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred --ccEEEeeccCCcEEEEEeecceeehhhc--------CCcceeEEecCCC-CEEEEeeccceeeecccchhHHHHHhcc
Confidence 5679999999999999999988655443 4589999999998 889999999999999998 666666655
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCC-eEEEEEcCCCCEEEEEECCCeEEec
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD-VIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
+. ....-..+++......+++|++||.|++||+.....+..+..|... |+++.++|...-|+++. ++.+..|
T Consensus 224 hk-n~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 224 HK-NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFW 296 (307)
T ss_pred cc-cceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceece
Confidence 54 3444567888888999999999999999999999999999988887 89999999877777775 3446666
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-37 Score=255.85 Aligned_cols=254 Identities=27% Similarity=0.443 Sum_probs=214.1
Q ss_pred cCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCE
Q 010324 199 MYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM 278 (513)
Q Consensus 199 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 278 (513)
..-..+.+.++ ||...|..+..++||++.++++.|++++ +||+.+++... .|.||...|.+++|+||++.
T Consensus 50 ~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~lr-lWDl~~g~~t~--------~f~GH~~dVlsva~s~dn~q 119 (315)
T KOG0279|consen 50 IKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGTLR-LWDLATGESTR--------RFVGHTKDVLSVAFSTDNRQ 119 (315)
T ss_pred cccCceeeeee-ccceEecceEEccCCceEEeccccceEE-EEEecCCcEEE--------EEEecCCceEEEEecCCCce
Confidence 34445566776 8999999999999999999999999998 99999986443 55679999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCcceeeecccc-cccCeEEEEEccC--CCEEEEeeCCCcEEEEecCCCceeeEecccccceeEE
Q 010324 279 LASGSQDGKIKVWRIRSGQCLRRLERA-HSEGVTSLVFSRD--GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDA 355 (513)
Q Consensus 279 l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 355 (513)
+++|+.|.+|++|++..+ +..++... +...|+|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+.++.+
T Consensus 120 ivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~ 198 (315)
T KOG0279|consen 120 IVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTV 198 (315)
T ss_pred eecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEE
Confidence 999999999999997754 44444423 3789999999997 7899999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-EEEE
Q 010324 356 IFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKS 434 (513)
Q Consensus 356 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~ 434 (513)
+++|||...++|+.||.+.+||++.++...++. +...|.+++|+|+. +.++...+..|+|||+..+ .+..
T Consensus 199 ~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-------a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 199 TVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-------AFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEE 269 (315)
T ss_pred EECCCCCEEecCCCCceEEEEEccCCceeEecc-------CCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhh
Confidence 999999999999999999999999999988775 56799999999974 5555555566999999843 3332
Q ss_pred eecC------ccCCCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 435 FSSG------KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 435 ~~~~------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
+... ........+++|+++|..|++|..|+.|++|.+.
T Consensus 270 l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 270 LKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 2211 1123445689999999999999999999999864
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.7e-36 Score=249.70 Aligned_cols=274 Identities=22% Similarity=0.327 Sum_probs=241.9
Q ss_pred eeeccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEecccccccccccccccccccc
Q 010324 183 FDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMM 262 (513)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~ 262 (513)
..+..........+|+.+.....|.|+ -....|-.++|+|.|+++|.|+-|+... ||++.+...... ....+.+.+
T Consensus 68 r~ivSaSqDGklIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLdN~Cs-iy~ls~~d~~g~--~~v~r~l~g 143 (343)
T KOG0286|consen 68 RRIVSASQDGKLIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLDNKCS-IYPLSTRDAEGN--VRVSRELAG 143 (343)
T ss_pred CeEEeeccCCeEEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcCceeE-EEeccccccccc--ceeeeeecC
Confidence 345556667778899999999999998 5677899999999999999999999996 999985532211 123456889
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCce
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKL 341 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~ 341 (513)
|.+-+.|+.|-+|+ .|+|++.|.+..+||+++|+.+..+. +|.+.|.+++++| +++.+++|+.|+..++||++.+..
T Consensus 144 HtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c 221 (343)
T KOG0286|consen 144 HTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC 221 (343)
T ss_pred ccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEEecccccceeeeeccCcce
Confidence 99999999998855 68899999999999999999999997 9999999999999 999999999999999999999999
Q ss_pred eeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc
Q 010324 342 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 421 (513)
Q Consensus 342 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 421 (513)
++.|.+|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+... ....+|++++|+..+ .++++|..|..
T Consensus 222 ~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~----~~~~gitSv~FS~SG-RlLfagy~d~~ 296 (343)
T KOG0286|consen 222 VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD----SIICGITSVAFSKSG-RLLFAGYDDFT 296 (343)
T ss_pred eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC----cccCCceeEEEcccc-cEEEeeecCCc
Confidence 9999999999999999999999999999999999999999988888754 345689999999987 99999999999
Q ss_pred EEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 422 IYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 422 i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
+.+||.- +..+..+.. |...|.++..+|||..+++|+.|..++||.
T Consensus 297 c~vWDtlk~e~vg~L~G---HeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 297 CNVWDTLKGERVGVLAG---HENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeEeeccccceEEEeec---cCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999976 555555553 567899999999999999999999999994
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-36 Score=278.37 Aligned_cols=299 Identities=22% Similarity=0.344 Sum_probs=248.9
Q ss_pred cCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCE
Q 010324 199 MYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM 278 (513)
Q Consensus 199 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 278 (513)
.++....++...||...|.++.|+.|.++|++|+.|.+++ +|+++..+... ...+.+|.+.|.+.-|..+...
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~r-l~~v~~~k~~~------~~~l~gHkd~VvacfF~~~~~~ 203 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSAR-LFGVDGNKNLF------TYALNGHKDYVVACFFGANSLD 203 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEE-EEEeccccccc------eEeccCCCcceEEEEeccCcce
Confidence 3445555555669999999999999999999999999998 99987655422 2356789999999999999999
Q ss_pred EEEEeCCCcEEEEEcCC-----------------------cce-----e-----eeccc---------------------
Q 010324 279 LASGSQDGKIKVWRIRS-----------------------GQC-----L-----RRLER--------------------- 304 (513)
Q Consensus 279 l~s~~~dg~i~vwd~~~-----------------------~~~-----~-----~~~~~--------------------- 304 (513)
+++.+.||.+.+|.... ++. . +.+..
T Consensus 204 l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvg 283 (893)
T KOG0291|consen 204 LYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVG 283 (893)
T ss_pred EEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEE
Confidence 99999999999997651 111 0 00000
Q ss_pred ---------------------ccccCeEEEEEccCCCEEEEeeCC-CcEEEEecCCCceeeEecccccceeEEEEccCCC
Q 010324 305 ---------------------AHSEGVTSLVFSRDGSQILSTSFD-STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 305 ---------------------~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 362 (513)
-...+|..++|+..|..|+.|+.. |.+.+|+..+...+.+.++|...+++++++|||+
T Consensus 284 FssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq 363 (893)
T KOG0291|consen 284 FSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ 363 (893)
T ss_pred ecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc
Confidence 012345556666666677666544 6777888877778888889999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccC
Q 010324 363 RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKRE 441 (513)
Q Consensus 363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~ 441 (513)
++++|+.||.|++||..++-|..++. .|...|+.+.|+..+ +.+++++-||+|+.||+. ....+++..+.
T Consensus 364 ~iaTG~eDgKVKvWn~~SgfC~vTFt------eHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~-- 434 (893)
T KOG0291|consen 364 LIATGAEDGKVKVWNTQSGFCFVTFT------EHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPE-- 434 (893)
T ss_pred EEEeccCCCcEEEEeccCceEEEEec------cCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCC--
Confidence 99999999999999999999999997 678899999999987 999999999999999997 66677776644
Q ss_pred CCcEEEEEECCCCCEEEEEecCc-eEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 442 GGDFVAACVSPKGEWIYCVGEDR-NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 442 ~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.....+++..|.|..+++|+.|. .|++|++.+|+++..+.||.+||.+++|+|++..|+|+|+|.+||+||.
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe
Confidence 34567899999999999999776 5999999999999999999999999999999999999999999999983
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.4e-35 Score=304.75 Aligned_cols=287 Identities=15% Similarity=0.203 Sum_probs=232.7
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEEEeCCCcEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIK 289 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~ 289 (513)
+|.+.|.+++|+|+|+++|+|+.|+.|+ +|+.............+...+. +...|.+++|+| ++.+|++++.||+|+
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~-iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIK-IFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEE-EEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 5899999999999999999999999997 9997642111000000111122 456899999988 578999999999999
Q ss_pred EEEcCCcceeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEc-cCCCEEEEE
Q 010324 290 VWRIRSGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT-NDGSRVVTA 367 (513)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 367 (513)
+||+.+++.+..+. +|...|++++|+| ++.+|++|+.||.|++||++++..+..+..+ ..|.++.|+ ++|.++++|
T Consensus 559 lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 559 VWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 99999999888886 8999999999997 7899999999999999999999888888754 578999995 579999999
Q ss_pred eCCCcEEEEeCCCCc-eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-------eEEEEeecCc
Q 010324 368 SSDCTVKVWDLKSTD-CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-------QVVKSFSSGK 439 (513)
Q Consensus 368 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-------~~~~~~~~~~ 439 (513)
+.||.|++||+++.. ....+ .+|...|.++.|.+ +..+++++.|+.|++||+.. ..+..+.
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~------~~h~~~V~~v~f~~--~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--- 705 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTM------IGHSKTVSYVRFVD--SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--- 705 (793)
T ss_pred eCCCeEEEEECCCCCccceEe------cCCCCCEEEEEEeC--CCEEEEEECCCEEEEEeCCCCccccCCcceEEEc---
Confidence 999999999998765 23333 26778999999963 37899999999999999862 2333333
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEee-------------ecccCCeEEEEEcCCCCEEEEEECCC
Q 010324 440 REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM-------------KVHEKDVIGVTHHPHRNLLATYGEDC 506 (513)
Q Consensus 440 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-------------~~h~~~v~~~~~~p~~~~l~s~~~dg 506 (513)
.+...+..++|+|++.+|++|+.||.|++|+.....++..+ ..|...|.+++|+|++..|++|+.||
T Consensus 706 gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 706 GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence 34566788999999999999999999999998765443222 23455799999999999999999999
Q ss_pred eEEecc
Q 010324 507 TMKLWK 512 (513)
Q Consensus 507 ~i~iWd 512 (513)
.|+||+
T Consensus 786 ~I~i~~ 791 (793)
T PLN00181 786 NIKILE 791 (793)
T ss_pred cEEEEe
Confidence 999997
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.8e-37 Score=268.66 Aligned_cols=270 Identities=22% Similarity=0.322 Sum_probs=231.0
Q ss_pred eeccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccC
Q 010324 184 DLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMH 263 (513)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h 263 (513)
.+..+........|+...-. ..+|...|.+.|+++.|+++|.++++|+.+|.|+ +|+..-....... ..|
T Consensus 110 RLltgs~SGEFtLWNg~~fn-FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iK-yWqpnmnnVk~~~--------ahh 179 (464)
T KOG0284|consen 110 RLLTGSQSGEFTLWNGTSFN-FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIK-YWQPNMNNVKIIQ--------AHH 179 (464)
T ss_pred eeEeecccccEEEecCceee-HHHHhhhhcccceeEEEccCCCEEEEcCCCceEE-ecccchhhhHHhh--------Hhh
Confidence 34445555556666653322 2344459999999999999999999999999998 9997654433211 125
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceee
Q 010324 264 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK 343 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 343 (513)
...|++++|+|+...+++|+.||+|+|||....+....+. +|.-.|.+++|+|....+++|+.|..|++||.+++.++.
T Consensus 180 ~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~ 258 (464)
T KOG0284|consen 180 AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA 258 (464)
T ss_pred hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh
Confidence 5999999999999999999999999999999888777775 999999999999999999999999999999999999999
Q ss_pred EecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEE
Q 010324 344 EFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 423 (513)
Q Consensus 344 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 423 (513)
++.+|+..|..+.|+|++++|++++.|..++++|+++.+.+.++. +|...++++.|+|-.+.++.+++.||.|.
T Consensus 259 tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r------~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 259 TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR------GHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh------cchhhheeeccccccccceeeccCCCceE
Confidence 999999999999999999999999999999999999777666665 78899999999999999999999999999
Q ss_pred EEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 424 IMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 424 i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
.|.+. ...+..+ ...|...|.+++|+|-|..|++|+.|.++++|...
T Consensus 333 h~~v~~~~p~~~i--~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 333 HWVVGLEEPLGEI--PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred EEeccccccccCC--CcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998 3333333 34567889999999999999999999999999753
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.9e-35 Score=271.87 Aligned_cols=282 Identities=24% Similarity=0.399 Sum_probs=248.8
Q ss_pred ccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC-CcEEE
Q 010324 212 TKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD-GKIKV 290 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-g~i~v 290 (513)
....|+|++|++..+.||+|-..|... +|.+..-.++..+.. ...+|..++|+..|++||.|+.. |.+-|
T Consensus 264 ~~~kvtaa~fH~~t~~lvvgFssG~f~-LyelP~f~lih~LSi--------s~~~I~t~~~N~tGDWiA~g~~klgQLlV 334 (893)
T KOG0291|consen 264 NSSKVTAAAFHKGTNLLVVGFSSGEFG-LYELPDFNLIHSLSI--------SDQKILTVSFNSTGDWIAFGCSKLGQLLV 334 (893)
T ss_pred cccceeeeeccCCceEEEEEecCCeeE-EEecCCceEEEEeec--------ccceeeEEEecccCCEEEEcCCccceEEE
Confidence 347899999999999999999999995 999988777765543 56789999999999999999764 89999
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCC
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 370 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 370 (513)
|+..+...+.+.. +|...+++++++|||.++++|+.||.|++||..++-+..+|..|++.|+.+.|+..|+.+++++-|
T Consensus 335 weWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 335 WEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLD 413 (893)
T ss_pred EEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecC
Confidence 9999988888876 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC-cEEEEEcc-CeEEEEeecCccCCCcEEEE
Q 010324 371 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS-SIYIMTLQ-GQVVKSFSSGKREGGDFVAA 448 (513)
Q Consensus 371 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-~i~i~d~~-~~~~~~~~~~~~~~~~~~~~ 448 (513)
|+|+.||+...+..+++..+.+ ....+++..|.+ .++.+|+.|. .|++|++. |+.+..+.. |.++|.++
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p-----~QfscvavD~sG-elV~AG~~d~F~IfvWS~qTGqllDiLsG---HEgPVs~l 484 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEP-----IQFSCVAVDPSG-ELVCAGAQDSFEIFVWSVQTGQLLDILSG---HEGPVSGL 484 (893)
T ss_pred CeEEeeeecccceeeeecCCCc-----eeeeEEEEcCCC-CEEEeeccceEEEEEEEeecCeeeehhcC---CCCcceee
Confidence 9999999999999999987653 467788888887 7777777765 79999998 555554443 67899999
Q ss_pred EECCCCCEEEEEecCceEEEEECCCce-eeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 449 CVSPKGEWIYCVGEDRNLYCFSHQSGK-LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 449 ~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+|+|+|..|++|+.|.+|++||+-... .+.++ .+...+.+++|+|+|..||+++.||.|.+||+
T Consensus 485 ~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 485 SFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred EEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 999999999999999999999986553 33344 36778999999999999999999999999985
No 32
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2e-36 Score=246.77 Aligned_cols=279 Identities=27% Similarity=0.392 Sum_probs=247.9
Q ss_pred ccccCceeEEEECC---CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCC
Q 010324 210 FGTKSHAECARFSP---DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG 286 (513)
Q Consensus 210 ~~h~~~v~~~~~s~---~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 286 (513)
.||..+|..++||| +|-+|++++.||.- .+-+-++|.-+. +|.||.+.|.+...+.+...-|+++.|-
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~p-mlr~g~tgdwig--------tfeghkgavw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKP-MLRNGDTGDWIG--------TFEGHKGAVWSATLNKNATRAASAAADF 81 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCc-hhccCCCCCcEE--------eeeccCcceeeeecCchhhhhhhhcccc
Confidence 39999999999996 89999999999998 577777776554 5667999999999999999999999999
Q ss_pred cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc-eeeEecccccceeEEEEccCCCEEE
Q 010324 287 KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK-LLKEFRGHSSYVNDAIFTNDGSRVV 365 (513)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~ 365 (513)
+.++||.-+|..+..+. |..-|.+++|+.|.++|++|+.+..+++||++..+ +...+.+|.+.|..+.|....+.++
T Consensus 82 takvw~a~tgdelhsf~--hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iL 159 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL 159 (334)
T ss_pred hhhhhhhhhhhhhhhhh--hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEE
Confidence 99999999999999985 88899999999999999999999999999997653 5678889999999999999889999
Q ss_pred EEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCc
Q 010324 366 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGD 444 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~ 444 (513)
+++.|++|++||.+++..++++..+ .+|+++.+++++ .+++....+.|.+||.. -..++.+.. ...
T Consensus 160 SSadd~tVRLWD~rTgt~v~sL~~~-------s~VtSlEvs~dG--~ilTia~gssV~Fwdaksf~~lKs~k~----P~n 226 (334)
T KOG0278|consen 160 SSADDKTVRLWDHRTGTEVQSLEFN-------SPVTSLEVSQDG--RILTIAYGSSVKFWDAKSFGLLKSYKM----PCN 226 (334)
T ss_pred eeccCCceEEEEeccCcEEEEEecC-------CCCcceeeccCC--CEEEEecCceeEEeccccccceeeccC----ccc
Confidence 9999999999999999999988744 578999999885 55666677889999998 344555443 345
Q ss_pred EEEEEECCCCCEEEEEecCceEEEEECCCceeeEee-ecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 445 FVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM-KVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 445 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
|.+...+|+...+++|++|+.++.||..+|+.+..+ ++|.++|.|+.|+|+|...++||.||+|++|.
T Consensus 227 V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 227 VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred cccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 889999999999999999999999999999998886 89999999999999999999999999999996
No 33
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-35 Score=239.95 Aligned_cols=280 Identities=19% Similarity=0.332 Sum_probs=237.7
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
||..+++.+.|+.+|.+|++++.|.+.. +|-..+|+.+. ++.||.+.|+|+..+.+.+.+++|+.|.++++
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~-vw~s~nGerlG--------ty~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPT-VWYSLNGERLG--------TYDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCce-EEEecCCceee--------eecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 8999999999999999999999999997 99887887665 45679999999999999999999999999999
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC-----CcEEEEecC-------CCceeeEecccccceeEEEEc
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD-----STARIHGLK-------SGKLLKEFRGHSSYVNDAIFT 358 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~-------~~~~~~~~~~~~~~v~~~~~~ 358 (513)
||+++|+++..+. ...+|..+.|+++|++++..+.+ +.|.++|++ +.++...+..+.+.++.+.|.
T Consensus 79 WDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 79 WDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9999999999986 78899999999999988877643 679999998 445677888888999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEEEeec
Q 010324 359 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSS 437 (513)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~ 437 (513)
|-++++++|..||.|.+||++++....... ..|...|+.+.++++. .++++++.|.+-++||... ..++.+..
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~-----~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVDSD-----EEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeeech-----hhhccccccccccCCc-ceEEecccCccceeeeccceeeEEEeee
Confidence 999999999999999999999986443322 2567799999999988 9999999999999999984 45555544
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecCce--EE------------EEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEE
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGEDRN--LY------------CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~--i~------------iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 503 (513)
..++++.+++|-..+++.|+.... |. +|++-..+.+..+++|-++|++++|||+|...+||+
T Consensus 231 ----e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 231 ----ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred ----cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence 456899999999888888874332 22 222222234566789999999999999999999999
Q ss_pred CCCeEEec
Q 010324 504 EDCTMKLW 511 (513)
Q Consensus 504 ~dg~i~iW 511 (513)
.||.|++.
T Consensus 307 EDG~VR~h 314 (327)
T KOG0643|consen 307 EDGYVRLH 314 (327)
T ss_pred CCceEEEE
Confidence 99999973
No 34
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-34 Score=274.82 Aligned_cols=289 Identities=25% Similarity=0.373 Sum_probs=256.6
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
..++.|..++|+|...++.++-..|.|+ +||+.-+.++..+ ..|.++|..++|+|++.++++|+.|-.|+|
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQ-lWDYRM~tli~rF--------deHdGpVRgv~FH~~qplFVSGGDDykIkV 77 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQ-LWDYRMGTLIDRF--------DEHDGPVRGVDFHPTQPLFVSGGDDYKIKV 77 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceee-eehhhhhhHHhhh--------hccCCccceeeecCCCCeEEecCCccEEEE
Confidence 3456788999999999999999999998 9999988777544 459999999999999999999999999999
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCC
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 370 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 370 (513)
|+..+.+++.++. +|-..|..+.|++.-..++++|.|.+|+||+..+++++..+.+|...|.|..|+|....+++++-|
T Consensus 78 WnYk~rrclftL~-GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLD 156 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLL-GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLD 156 (1202)
T ss_pred Eecccceehhhhc-cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEeccc
Confidence 9999999999997 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCceeEeec-----------------------CCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEc
Q 010324 371 CTVKVWDLKSTDCLQTFK-----------------------PPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL 427 (513)
Q Consensus 371 g~i~iwd~~~~~~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~ 427 (513)
.+|++||+...+....-+ ....+.+|+..|+-++|+|.- .++++|+.|..|++|.+
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrm 235 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRM 235 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEe
Confidence 999999986322111000 011245788999999999987 89999999999999999
Q ss_pred cCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCe
Q 010324 428 QGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCT 507 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 507 (513)
+............|...|.++-|+|..+.+++.++|+.|++||+...+.+++++...+..+.++-+|..+++|+|-+.|
T Consensus 236 netKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG- 314 (1202)
T KOG0292|consen 236 NETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG- 314 (1202)
T ss_pred ccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-
Confidence 9777777777777888999999999999999999999999999999999999988888999999999999998876555
Q ss_pred EEec
Q 010324 508 MKLW 511 (513)
Q Consensus 508 i~iW 511 (513)
+.|+
T Consensus 315 m~VF 318 (1202)
T KOG0292|consen 315 MIVF 318 (1202)
T ss_pred eEEE
Confidence 4444
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-33 Score=251.64 Aligned_cols=289 Identities=20% Similarity=0.327 Sum_probs=248.9
Q ss_pred eeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC--
Q 010324 208 IKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD-- 285 (513)
Q Consensus 208 ~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-- 285 (513)
+..+|...++-..|||.|.|+|+|...|+|| |||....+.+-.. .++.-.++|.+++|+++++++++.+..
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vR-IWdtt~~~hiLKn------ef~v~aG~I~Di~Wd~ds~RI~avGEGre 126 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVR-IWDTTQKEHILKN------EFQVLAGPIKDISWDFDSKRIAAVGEGRE 126 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEE-EEeccCcceeeee------eeeecccccccceeCCCCcEEEEEecCcc
Confidence 3348999999999999999999999999998 9998764433222 233367899999999999999888653
Q ss_pred --CcEEEEEcCCcceeeecccccccCeEEEEEccCCC-EEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCC
Q 010324 286 --GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS-QILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 286 --g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 362 (513)
|.+.+|| +|..+..+. +|...|+++.|-|... .+++|+.|++|.+|+-...+...+++.|...|.|+.|+|||.
T Consensus 127 rfg~~F~~D--SG~SvGei~-GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~ 203 (603)
T KOG0318|consen 127 RFGHVFLWD--SGNSVGEIT-GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS 203 (603)
T ss_pred ceeEEEEec--CCCccceee-ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCC
Confidence 4566666 677788887 9999999999998544 689999999999998777777788889999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccC
Q 010324 363 RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKRE 441 (513)
Q Consensus 363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~ 441 (513)
++++++.||++.+||-.+++.+..+... .+|.+.|.+++|+|++ ..+++++.|.++++||.. ...++.+.....-
T Consensus 204 ~Fat~gsDgki~iyDGktge~vg~l~~~---~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v 279 (603)
T KOG0318|consen 204 RFATAGSDGKIYIYDGKTGEKVGELEDS---DAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV 279 (603)
T ss_pred eEEEecCCccEEEEcCCCccEEEEecCC---CCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCch
Confidence 9999999999999999999999888763 3799999999999998 999999999999999998 5566666655543
Q ss_pred CCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 442 GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 442 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
...-..+.|- ...|++.+.+|.|.+++...+.++..+.+|...|+++..+|++.+|.+|+.||.|.-|+
T Consensus 280 ~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 280 EDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred hceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 3444555565 66899999999999999999999999999999999999999999999999999999997
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-34 Score=263.95 Aligned_cols=281 Identities=21% Similarity=0.349 Sum_probs=253.9
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
.++.+|.|+.|+|...+++++-.+|.+. |||.++....+.+.. ...+|.+..|-+.-+++++|+.|..|+|
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~-IWnyetqtmVksfeV--------~~~PvRa~kfiaRknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQ-IWNYETQTMVKSFEV--------SEVPVRAAKFIARKNWIVTGSDDMQIRV 81 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeE-EEecccceeeeeeee--------cccchhhheeeeccceEEEecCCceEEE
Confidence 5888999999999999999999999996 999999888776654 6789999999999999999999999999
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC-ceeeEecccccceeEEEEcc-CCCEEEEEe
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTN-DGSRVVTAS 368 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 368 (513)
|+..+++.+..+. .|...|++++.+|...+++++|.|-+|++||...+ .+.+++.+|...|.+++|+| |.+.+++++
T Consensus 82 fnynt~ekV~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 82 FNYNTGEKVKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EecccceeeEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 9999999999998 99999999999999999999999999999999755 67789999999999999999 667999999
Q ss_pred CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC-CCeEEEEcCCCcEEEEEccCeE-EEEeecCccCCCcEE
Q 010324 369 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN-PDHIVVCNKTSSIYIMTLQGQV-VKSFSSGKREGGDFV 446 (513)
Q Consensus 369 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~~~~~ 446 (513)
-|++|++|.+.+..+..++. +|...|+++.+.+.+ ..++++|+.|..+++||.+.+. +.++.. |...+.
T Consensus 161 LDrTVKVWslgs~~~nfTl~------gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG---Ht~Nvs 231 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLE------GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG---HTNNVS 231 (794)
T ss_pred ccccEEEEEcCCCCCceeee------ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc---ccccce
Confidence 99999999999888877776 889999999999865 4589999999999999998553 344433 455689
Q ss_pred EEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 447 AACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 447 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
.++|+|.-..+++|++||+++||+..+-++..++.-.-+.|.|++-.+.++.++.|.+.|.|.+
T Consensus 232 ~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 232 FVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999999999999999999998888888889999999998889999999988754
No 37
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-34 Score=273.48 Aligned_cols=203 Identities=22% Similarity=0.407 Sum_probs=191.3
Q ss_pred eccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcE
Q 010324 209 KFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKI 288 (513)
Q Consensus 209 ~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 288 (513)
..||.++|..+.|+|+.++|++++.|+++| +|.+.+..... .+.||..+|.++.|+|.|-++||++.|++.
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svR-LWsl~t~s~~V--------~y~GH~~PVwdV~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVR-LWSLDTWSCLV--------IYKGHLAPVWDVQFAPRGYYFATASHDQTA 517 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCccee-eeecccceeEE--------EecCCCcceeeEEecCCceEEEecCCCcee
Confidence 359999999999999999999999999998 99999866543 445799999999999999999999999999
Q ss_pred EEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEe
Q 010324 289 KVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS 368 (513)
Q Consensus 289 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 368 (513)
++|......+.+.+. +|-+.|.|+.|+|+..++++||.|.+|++||+.+|..++.|.+|.++|.+++|+|+|++|++|+
T Consensus 518 rLWs~d~~~PlRifa-ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFA-GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred eeeecccCCchhhhc-ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc
Confidence 999999988888887 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc
Q 010324 369 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 428 (513)
Q Consensus 369 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~ 428 (513)
.||.|.+||+.++..+..+. +|.+.+.++.|+.++ ..+++++.|..|++||+.
T Consensus 597 ed~~I~iWDl~~~~~v~~l~------~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLK------GHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLT 649 (707)
T ss_pred cCCcEEEEEcCCCcchhhhh------cccCceeEEEEecCC-CEEEecCCCCeEEEEEch
Confidence 99999999999998887776 778899999999988 999999999999999986
No 38
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-34 Score=273.35 Aligned_cols=265 Identities=22% Similarity=0.389 Sum_probs=214.8
Q ss_pred ccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEecccccc---------------------------------
Q 010324 202 TTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKL--------------------------------- 248 (513)
Q Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~--------------------------------- 248 (513)
....+.+...|.+.|+|+.||+||+|||+||.||.|+ ||.+...+.
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~vir-VWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIR-VWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eEEeeccccccCCcEEEEEeCCCCceeeecCCCceEE-EEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 3445566669999999999999999999999999998 998866100
Q ss_pred -------------------ccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccC
Q 010324 249 -------------------KKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEG 309 (513)
Q Consensus 249 -------------------~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 309 (513)
...+...+...+.||.+.|.+++||.+ .+|++++.|.+|++|++....+++.|. |...
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~--Hndf 411 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS--HNDF 411 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe--cCCe
Confidence 000112234578899999999999976 489999999999999999999999995 9999
Q ss_pred eEEEEEcc-CCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeec
Q 010324 310 VTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 388 (513)
Q Consensus 310 v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 388 (513)
|+|++|+| |.++|++|+-||.|+||++...+.+.-. .-..-|++++|.|||++.++|+.+|.+++|+....+....+.
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 99999999 8899999999999999999766655444 445789999999999999999999999999998877655543
Q ss_pred CCC--CCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-EEEEeecCccCCCcEEEEEECCCCCEEEEEecCce
Q 010324 389 PPP--PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRN 465 (513)
Q Consensus 389 ~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 465 (513)
... ........|+.+.+.|..+..+++.+.|..|+|+|.+.. .+..+.... ....-....|+.||++|+++++|..
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-NTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-cCCcceeeeEccCCCEEEEeecCce
Confidence 221 111122389999999998889999999999999999744 444444443 3344567889999999999999999
Q ss_pred EEEEECC
Q 010324 466 LYCFSHQ 472 (513)
Q Consensus 466 i~iwd~~ 472 (513)
||+|+..
T Consensus 570 VYiW~~~ 576 (712)
T KOG0283|consen 570 VYIWKND 576 (712)
T ss_pred EEEEeCC
Confidence 9999974
No 39
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-34 Score=268.38 Aligned_cols=318 Identities=23% Similarity=0.311 Sum_probs=262.3
Q ss_pred eeeccCcccccccccccCcccceeeeeccccCceeEEEECCCCC--EEEEEecCCeEEEEEecccccccccccccccccc
Q 010324 183 FDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQ--FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETF 260 (513)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~ 260 (513)
-.+..+.......+|+.....+.|.++ ||.+.|.++.|+|+-+ .|++|..|+.++ +||+.+... ....+
T Consensus 118 ~LlAtggaD~~v~VWdi~~~~~th~fk-G~gGvVssl~F~~~~~~~lL~sg~~D~~v~-vwnl~~~~t-------cl~~~ 188 (775)
T KOG0319|consen 118 TLLATGGADGRVKVWDIKNGYCTHSFK-GHGGVVSSLLFHPHWNRWLLASGATDGTVR-VWNLNDKRT-------CLHTM 188 (775)
T ss_pred ceEEeccccceEEEEEeeCCEEEEEec-CCCceEEEEEeCCccchhheeecCCCceEE-EEEcccCch-------HHHHH
Confidence 444556667788899999999999999 9999999999999765 589999999997 999987654 23455
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecc-------------------------------------
Q 010324 261 MMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE------------------------------------- 303 (513)
Q Consensus 261 ~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------------------------------- 303 (513)
..|.+.|++++|++|+..+++++.|..+.+||+.+.+..++..
T Consensus 189 ~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~e 268 (775)
T KOG0319|consen 189 ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSE 268 (775)
T ss_pred HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecc
Confidence 6699999999999999999999999999999974322111100
Q ss_pred --------------------------------------------------------------------------------
Q 010324 304 -------------------------------------------------------------------------------- 303 (513)
Q Consensus 304 -------------------------------------------------------------------------------- 303 (513)
T Consensus 269 s~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~l 348 (775)
T KOG0319|consen 269 SGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPEL 348 (775)
T ss_pred cchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCce
Confidence
Q ss_pred -------------cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc----eeeEecccccceeEEEEccCC-CEEE
Q 010324 304 -------------RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK----LLKEFRGHSSYVNDAIFTNDG-SRVV 365 (513)
Q Consensus 304 -------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~ 365 (513)
.+|...|.++....+|..|++|+.|.++++|.++++. ++....+|.+.|.+++++..+ .+|+
T Consensus 349 r~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffv 428 (775)
T KOG0319|consen 349 RLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFV 428 (775)
T ss_pred EEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEE
Confidence 4677788888855578899999999999999884442 455667899999999997644 5899
Q ss_pred EEeCCCcEEEEeCCCCceeEe---ecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEEEeecCccC
Q 010324 366 TASSDCTVKVWDLKSTDCLQT---FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKRE 441 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~ 441 (513)
+++.|+++++|++...+.... +........|+..|++++++|++ .++++|+.|.+.++|++.. .....+.. |
T Consensus 429 svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsG---H 504 (775)
T KOG0319|consen 429 SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSG---H 504 (775)
T ss_pred EecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEeeC---C
Confidence 999999999999986322111 11111234789999999999988 9999999999999999983 33444443 4
Q ss_pred CCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 442 GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 442 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
...+.++.|+|..+.+++++.|++|+||.+.+..+++++.||+..|..+.|-.++..|+||+.||-|++|+.
T Consensus 505 ~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 505 TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 567999999999999999999999999999999999999999999999999999999999999999999973
No 40
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=6.1e-35 Score=254.56 Aligned_cols=298 Identities=21% Similarity=0.361 Sum_probs=256.3
Q ss_pred cccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC
Q 010324 195 DVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR 274 (513)
Q Consensus 195 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 274 (513)
.+.+..|......+. .|.+.+..+.|-++...|++|+.|..|+ +|+...++. ....++.|..++|+.+.|.+
T Consensus 158 ~v~~~lpS~~~~~ld-~h~gev~~v~~l~~sdtlatgg~Dr~Ik-~W~v~~~k~------~~~~tLaGs~g~it~~d~d~ 229 (459)
T KOG0288|consen 158 FVEDTLPSRALFVLD-AHEGEVHDVEFLRNSDTLATGGSDRIIK-LWNVLGEKS------ELISTLAGSLGNITSIDFDS 229 (459)
T ss_pred hhhcccchhhhhhhh-ccccccceeEEccCcchhhhcchhhhhh-hhhcccchh------hhhhhhhccCCCcceeeecC
Confidence 455677888888876 8999999999999999999999999997 999887662 23346677889999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeE
Q 010324 275 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVND 354 (513)
Q Consensus 275 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 354 (513)
+++++++++.|+.+++|++...+...++. +|...|+++.|......+++|+.|.+|+.||+....+..+.- ....+.+
T Consensus 230 ~~~~~iAas~d~~~r~Wnvd~~r~~~TLs-GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnD 307 (459)
T KOG0288|consen 230 DNKHVIAASNDKNLRLWNVDSLRLRHTLS-GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCND 307 (459)
T ss_pred CCceEEeecCCCceeeeeccchhhhhhhc-ccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccc
Confidence 99999999999999999999999999998 899999999999877779999999999999999887777654 3345777
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEE
Q 010324 355 AIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKS 434 (513)
Q Consensus 355 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 434 (513)
|+.+ ...+++|..|++|++||.++..+....+ ..+.|+++..++++ ..+.+++.|..+.+.|+++..+..
T Consensus 308 I~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-------~gg~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~ 377 (459)
T KOG0288|consen 308 IVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP-------LGGRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQ 377 (459)
T ss_pred eEec--ceeeeecccccceEEEeccCCceeeEee-------cCcceeeEeeccCC-eEEeeecCCCceeeeecccccEEE
Confidence 7776 4578999999999999999998888775 23489999999988 777888999999999999766655
Q ss_pred eecCc--cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCC--eEEEEEcCCCCEEEEEECCCeEEe
Q 010324 435 FSSGK--REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD--VIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 435 ~~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
..... ......+.++|||++.|+++|+.||.|+||++.++++...+.....+ |++++|+|.|..|++++.++.+.+
T Consensus 378 ~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 378 TFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred EeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence 44332 23445789999999999999999999999999999999988766554 999999999999999999999999
Q ss_pred cc
Q 010324 511 WK 512 (513)
Q Consensus 511 Wd 512 (513)
|.
T Consensus 458 W~ 459 (459)
T KOG0288|consen 458 WT 459 (459)
T ss_pred cC
Confidence 94
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.6e-34 Score=245.25 Aligned_cols=247 Identities=21% Similarity=0.371 Sum_probs=225.6
Q ss_pred ccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEE
Q 010324 253 QYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTAR 332 (513)
Q Consensus 253 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 332 (513)
++.....+.+|.+.|.|+++.|.+.++++|+.|++|+|||+.+|+...++. +|...|..+++++-..|+++++.|+.|+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeE
Confidence 344556788999999999999999999999999999999999999999887 8999999999999999999999999999
Q ss_pred EEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCe
Q 010324 333 IHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH 412 (513)
Q Consensus 333 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (513)
.||+...+.++.+.+|-+.|.|++.+|.-..|++|+.|.++++||+++...+..+. +|..+|.++.+.|.+ ..
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~------GH~~~V~~V~~~~~d-pq 291 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS------GHTNPVASVMCQPTD-PQ 291 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec------CCCCcceeEEeecCC-Cc
Confidence 99999999999999999999999999999999999999999999999999888876 889999999999987 78
Q ss_pred EEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEE
Q 010324 413 IVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVT 491 (513)
Q Consensus 413 l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 491 (513)
+++|+.|++|++||+. |+....+.. +...+.+++.+|....+++++.| .|+.|++..|..+..+.+|..-|++++
T Consensus 292 vit~S~D~tvrlWDl~agkt~~tlt~---hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~ 367 (460)
T KOG0285|consen 292 VITGSHDSTVRLWDLRAGKTMITLTH---HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLS 367 (460)
T ss_pred eEEecCCceEEEeeeccCceeEeeec---ccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeee
Confidence 8999999999999998 666655554 45568999999999888888755 689999999999999999999999999
Q ss_pred EcCCCCEEEEEECCCeEEecc
Q 010324 492 HHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 492 ~~p~~~~l~s~~~dg~i~iWd 512 (513)
.+.|+ ++++|+++|.+.+||
T Consensus 368 ~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 368 VNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred eccCc-eEEEcCCceEEEEEe
Confidence 98765 778999999999998
No 42
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-32 Score=231.07 Aligned_cols=284 Identities=23% Similarity=0.361 Sum_probs=240.0
Q ss_pred ccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC--CCcEE
Q 010324 212 TKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ--DGKIK 289 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--dg~i~ 289 (513)
..+.|.++.|+++|.++++++.|.+++ +||..++.....+.. +.-.|..++|......++.++. |.+|+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~-LYd~~~g~~~~ti~s--------kkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLR-LYDSLSGKQVKTINS--------KKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEE-EEEcCCCceeeEeec--------ccccccEEEEecCCceEEEccCCCCCceE
Confidence 567899999999999999999999997 999999988776653 5667888889887777777776 88999
Q ss_pred EEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC
Q 010324 290 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS 369 (513)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 369 (513)
..++.+.+.++-+. +|...|++++.+|-+..+++++.|++|++||++..++...+.....++ ++|+|+|-.+|++..
T Consensus 84 yLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG 160 (311)
T ss_pred EEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence 99999999999997 999999999999999999999999999999999888777666444434 789999999999998
Q ss_pred CCcEEEEeCCCC--ceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEE
Q 010324 370 DCTVKVWDLKST--DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFV 446 (513)
Q Consensus 370 dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~ 446 (513)
...|++||++.- .+..++.... ......+.+.|+|++ +.++.++..+.+++.|.- |.....+........-..
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~---~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITD---NDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCC---CCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 889999999964 3344444332 446678999999998 888888999999999976 666666666554444446
Q ss_pred EEEECCCCCEEEEEecCceEEEEECCCceeeEeeec-ccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 447 AACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 447 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
..+|+||++++++|+.||+|.+|++++|..+..+.+ +.+++.++.|+|...+++|++ ..+.+|=|
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p 302 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLP 302 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEec
Confidence 889999999999999999999999999999999998 689999999999888888775 47888854
No 43
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6e-33 Score=228.07 Aligned_cols=274 Identities=20% Similarity=0.308 Sum_probs=237.5
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEEEeCCCcEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIK 289 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~ 289 (513)
+|...|.+++|+-+|..||+|+.|++++ +|++...+..... ...+|.+.|-.++|+| +.+.+++++.|.+|+
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~-v~n~e~~r~~~~~------~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVS-VWNLERDRFRKEL------VYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceE-EEEecchhhhhhh------cccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 8999999999999999999999999997 9999887544333 4567999999999998 667999999999999
Q ss_pred EEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC
Q 010324 290 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS 369 (513)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 369 (513)
+||++.+++...+. ....=.-+.|+|+|.++++++.|..|.+.|.++.+.....+ ....++.++|+.++.+++....
T Consensus 91 ~wd~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 91 IWDIRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred EEEeccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecC
Confidence 99999999998886 33444568999999999999999999999999888776655 4456888999988888888888
Q ss_pred CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeE-EEEeecCccCCCcEEEE
Q 010324 370 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV-VKSFSSGKREGGDFVAA 448 (513)
Q Consensus 370 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~ 448 (513)
.|.|.|......+++.+++ +|.....++.|.|++ .++++|+.|..+.+||++.-. .+.+.. ..-+|..+
T Consensus 168 lG~v~ILsypsLkpv~si~------AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC~R~isR---ldwpVRTl 237 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIK------AHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELICERCISR---LDWPVRTL 237 (313)
T ss_pred CceEEEEeccccccccccc------cCCcceEEEEECCCC-ceEeeccccceeeccChhHhhhheeecc---ccCceEEE
Confidence 8999999988777776665 788889999999998 999999999999999998443 333333 45679999
Q ss_pred EECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECC
Q 010324 449 CVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 505 (513)
Q Consensus 449 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d 505 (513)
.||.+|++||+|++|-.|-|=++.+|..+..++ +.++...|+|||...+||.+++|
T Consensus 238 SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 999999999999999999999999999999986 67899999999999999988765
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.6e-35 Score=249.81 Aligned_cols=267 Identities=21% Similarity=0.361 Sum_probs=225.2
Q ss_pred ccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 212 TKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
....|.|+.+. ...+++|..|.+|+ |||.++-... ..+.||++.|.|+.|. .+.+++|+.|.+|++|
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTik-iWD~n~~~c~--------~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvW 262 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIK-IWDKNSLECL--------KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVW 262 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceE-EeccccHHHH--------HhhhcCCCcEEeeecc--ceEEEecCCCceEEEE
Confidence 45679999984 55899999999998 9998875544 4667899999999996 5699999999999999
Q ss_pred EcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce---eeEecccccceeEEEEccCCCEEEEEe
Q 010324 292 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL---LKEFRGHSSYVNDAIFTNDGSRVVTAS 368 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~ 368 (513)
|+++|+++.++. .|...|..+.|+ ..++++++.|.++.+||+.+... ...+.+|...|+.+.|+ .+++++++
T Consensus 263 Dv~tge~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsAS 337 (499)
T KOG0281|consen 263 DVNTGEPLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS 337 (499)
T ss_pred eccCCchhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEec
Confidence 999999999997 899999999997 45999999999999999977643 34567899999999997 46999999
Q ss_pred CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEE
Q 010324 369 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVA 447 (513)
Q Consensus 369 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~ 447 (513)
.|.+|++|++.+++.++++. +|...|.++.+ .+.++++|+.|.+|++||+. |..++.+.. |..-+.+
T Consensus 338 gDRTikvW~~st~efvRtl~------gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeG---HEeLvRc 405 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLN------GHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEG---HEELVRC 405 (499)
T ss_pred CCceEEEEeccceeeehhhh------cccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhc---hHHhhhh
Confidence 99999999999999998876 66666666655 34899999999999999998 555555544 3445777
Q ss_pred EEECCCCCEEEEEecCceEEEEECCCce---------eeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 448 ACVSPKGEWIYCVGEDRNLYCFSHQSGK---------LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 448 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+.|. .+.+++|+.||+|++||+.++. ++..+..|++.|..+.| |...+++++.|.+|.|||
T Consensus 406 iRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 406 IRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred eeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 7774 6789999999999999998764 33455678999999999 677899999999999998
No 45
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.1e-33 Score=242.47 Aligned_cols=288 Identities=19% Similarity=0.322 Sum_probs=237.7
Q ss_pred cCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCC-
Q 010324 199 MYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE- 277 (513)
Q Consensus 199 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~- 277 (513)
..|.++.+.+ .|.+.|.++... ++++++|+.||.++ +||... +.. ..+.||.++|.+++|.-.+.
T Consensus 93 ~~aP~pl~~~--~hdDWVSsv~~~--~~~IltgsYDg~~r-iWd~~G-k~~--------~~~~Ght~~ik~v~~v~~n~~ 158 (423)
T KOG0313|consen 93 ITAPKPLQCF--LHDDWVSSVKGA--SKWILTGSYDGTSR-IWDLKG-KSI--------KTIVGHTGPIKSVAWVIKNSS 158 (423)
T ss_pred cCCCCccccc--cchhhhhhhccc--CceEEEeecCCeeE-EEecCC-ceE--------EEEecCCcceeeeEEEecCCc
Confidence 3444444544 799999999887 78999999999998 999754 332 34567999999988865443
Q ss_pred --EEEEEeCCCcEEEEEcCCcceeeec---ccccccCeEEEEEccCCCEEEEeeCCCcEEEEecC---------------
Q 010324 278 --MLASGSQDGKIKVWRIRSGQCLRRL---ERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK--------------- 337 (513)
Q Consensus 278 --~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~--------------- 337 (513)
.+++++.|.++++|.++.++..... ..+|...|.+++..++|..+++|+.|.+|.+|+..
T Consensus 159 ~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr 238 (423)
T KOG0313|consen 159 SCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR 238 (423)
T ss_pred cceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhh
Confidence 5999999999999999877643221 12899999999999999999999999999999932
Q ss_pred ----------CCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecC
Q 010324 338 ----------SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP 407 (513)
Q Consensus 338 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (513)
++.++..+.+|..+|.++.|++ ...+.+++.|.+|+.||+.++....++.. ....+++..+|
T Consensus 239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-------~ksl~~i~~~~ 310 (423)
T KOG0313|consen 239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-------NKSLNCISYSP 310 (423)
T ss_pred hhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-------CcceeEeeccc
Confidence 2235667789999999999998 56899999999999999999998877753 45789999999
Q ss_pred CCCCeEEEEcCCCcEEEEEcc---CeEEEEeecCccCCCcEEEEEECCCCC-EEEEEecCceEEEEECCCce-eeEeeec
Q 010324 408 KNPDHIVVCNKTSSIYIMTLQ---GQVVKSFSSGKREGGDFVAACVSPKGE-WIYCVGEDRNLYCFSHQSGK-LEHLMKV 482 (513)
Q Consensus 408 ~~~~~l~~~~~~~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~-~~~~~~~ 482 (513)
.. .++++|+.|..+++||.+ +..+..... .|...|.++.|+|... .+++|+.||++++||+++.+ ++..+.+
T Consensus 311 ~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~ 387 (423)
T KOG0313|consen 311 LS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG 387 (423)
T ss_pred cc-ceeeecCCCCceeecCCCCCCCceeEEeee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc
Confidence 66 999999999999999998 333333333 3456899999999765 56788899999999999887 8999999
Q ss_pred ccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 483 HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 483 h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
|...|.++.|+ ++..+++||.|.+|+|++
T Consensus 388 h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 388 HNDKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred CCceEEEEecc-CCceEEeccCcceEEEec
Confidence 99999999997 567899999999999975
No 46
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=262.89 Aligned_cols=291 Identities=21% Similarity=0.357 Sum_probs=249.6
Q ss_pred CcccceeeeeccccCceeEEEE-CCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCE
Q 010324 200 YPTTLSHTIKFGTKSHAECARF-SPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM 278 (513)
Q Consensus 200 ~~~~~~~~~~~~h~~~v~~~~~-s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 278 (513)
...++...+- |.++.|..|+| .|+.++||+++..+.+| +|+..+.... .+.||...|.++....+|.+
T Consensus 311 ~~l~i~k~iv-G~ndEI~Dm~~lG~e~~~laVATNs~~lr-~y~~~~~~c~---------ii~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 311 DELTIVKQIV-GYNDEILDMKFLGPEESHLAVATNSPELR-LYTLPTSYCQ---------IIPGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred cccEEehhhc-CCchhheeeeecCCccceEEEEeCCCceE-EEecCCCceE---------EEeCchhheeeeeecccCcE
Confidence 3444555554 88899999887 46889999999999999 8877664432 56789999999996678899
Q ss_pred EEEEeCCCcEEEEEcCCcc----eeeecccccccCeEEEEEccCC-CEEEEeeCCCcEEEEecCCCce-----ee----E
Q 010324 279 LASGSQDGKIKVWRIRSGQ----CLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKL-----LK----E 344 (513)
Q Consensus 279 l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-----~~----~ 344 (513)
|+||+.|.++++|.++.+. ++.... +|.+.|.+++++..+ .+|+++|.|+++++|++...+. .. .
T Consensus 380 lat~sKD~svilWr~~~~~~~~~~~a~~~-gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 380 LATGSKDKSVILWRLNNNCSKSLCVAQAN-GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred EEEecCCceEEEEEecCCcchhhhhhhhc-ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 9999999999999885443 333443 899999999998744 5789999999999999975221 11 2
Q ss_pred ecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEE
Q 010324 345 FRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYI 424 (513)
Q Consensus 345 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i 424 (513)
...|...|++++++|+.+.++||+.|++.++|++.......++. +|...+.++.|+|.+ ..+++++.|.+|++
T Consensus 459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs------GH~RGvw~V~Fs~~d-q~laT~SgD~TvKI 531 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS------GHTRGVWCVSFSKND-QLLATCSGDKTVKI 531 (775)
T ss_pred HHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee------CCccceEEEEecccc-ceeEeccCCceEEE
Confidence 34689999999999999999999999999999999888888876 888999999999987 89999999999999
Q ss_pred EEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEE
Q 010324 425 MTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 425 ~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 503 (513)
|.+. ...++++.. |...|..+.|-.+|+.+++++.||-|++|+++++.++.++.+|.+.|++++-+|...+++||+
T Consensus 532 W~is~fSClkT~eG---H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg 608 (775)
T KOG0319|consen 532 WSISTFSCLKTFEG---HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGG 608 (775)
T ss_pred EEeccceeeeeecC---ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecC
Confidence 9998 455666654 467799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEecc
Q 010324 504 EDCTMKLWK 512 (513)
Q Consensus 504 ~dg~i~iWd 512 (513)
.||.|.+|+
T Consensus 609 ~Dg~i~~wk 617 (775)
T KOG0319|consen 609 GDGRIIFWK 617 (775)
T ss_pred CCeEEEEee
Confidence 999999996
No 47
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-33 Score=240.15 Aligned_cols=380 Identities=20% Similarity=0.341 Sum_probs=291.2
Q ss_pred ChhhHHHHHHHHHhhcChHHHHHHHHhhcCccccccccHHHHHHHhccCChhhHHhhhccccCChhhHHHHHHHHHHHHH
Q 010324 6 EARDVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVAQLKLPRNKLEDLYEQIVLEMI 85 (513)
Q Consensus 6 ~~~e~~~li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~le~l 85 (513)
.++|+++-|..++..+||.++...+-+|.....+ +.+...-+++-.|..+.+ + |.++.||.
T Consensus 9 ~~~ei~~aiadl~g~n~~~es~~i~~~~~~~~~~----~~~~~g~ll~kkwtSv~r------l---------qKki~~Le 69 (406)
T KOG0295|consen 9 QRDEINMAIADLSGSNGYSESDRIFHKEASLATE----MRKKDGGLLEKKWTSVDR------L---------QKKIRELE 69 (406)
T ss_pred chHHHHHHHHhhhccccccccceeEeecCCCccc----ccccccceeeccccccch------h---------HHHHHHHH
Confidence 4688999999999999999999999999766442 444556677777776555 1 11111111
Q ss_pred HcCChHHHHHHHHhCchhhhhccCCHHHHHHHHHHhcccCCCccccccCChHHHHHHHHHHHHhcccccCCh-hHHHHHH
Q 010324 86 ELRELDTARAILRQTQAMGVMKQEQPERYLRLEHLLVRTYFDAHEAYQDSTKERRRAQIAQAIAAEVSVVPP-SRLMALI 164 (513)
Q Consensus 86 ~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~rl~~l~ 164 (513)
.+ ++++. .+++. .+++..++.. .. .+|+ +-...+.
T Consensus 70 -s~-l~~~~-----------------------~el~~----------g~pt~~~~~~-------~~--wipRp~l~~~l~ 105 (406)
T KOG0295|consen 70 -SK-LDETG-----------------------DELIA----------GDPTGSKRTP-------AL--WIPRPNLVQKLA 105 (406)
T ss_pred -hh-hcccc-----------------------ccccc----------CCCCcCccCh-------hh--cCCCCCchhhhh
Confidence 00 00000 00000 0111111100 00 2222 2111222
Q ss_pred HHHHhhhhhcCCCCCCCceeeccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEecc
Q 010324 165 GQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYL 244 (513)
Q Consensus 165 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~ 244 (513)
+ ...+.-+..+||.- +..+..........++....++...++ ||.+.|..++|+..|++||+++.|-.++ +||.+
T Consensus 106 g--~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsDl~~~-LWd~~ 180 (406)
T KOG0295|consen 106 G--HRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGELERSLR-GHTDSVFDISFDASGKYLATCSSDLSAK-LWDFD 180 (406)
T ss_pred c--cccceeeeeeccCc-eEEEEecCCceEEEEEccchhhhhhhh-ccccceeEEEEecCccEEEecCCccchh-heeHH
Confidence 2 23333344555542 223333334456678888999988888 9999999999999999999999999997 99987
Q ss_pred ccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEE
Q 010324 245 SGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILS 324 (513)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 324 (513)
+. +...+.+.+|...|.++.|-|.|.++++++.|.+|+.|++.+|.++.++. +|...|..++.+.||..+++
T Consensus 181 ~~-------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGti~As 252 (406)
T KOG0295|consen 181 TF-------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGTIIAS 252 (406)
T ss_pred HH-------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecCCeeEEEe
Confidence 63 23344667899999999999999999999999999999999999999997 89999999999999999999
Q ss_pred eeCCCcEEEEecCCCceeeEecccccceeEEEEccC---------------CCEEEEEeCCCcEEEEeCCCCceeEeecC
Q 010324 325 TSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND---------------GSRVVTASSDCTVKVWDLKSTDCLQTFKP 389 (513)
Q Consensus 325 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 389 (513)
++.|.+|++|-+.++++...++.|..+|.+++|.|. +.++.+++.|++|++||+.++.++.++.
T Consensus 253 ~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~- 331 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV- 331 (406)
T ss_pred cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-
Confidence 999999999999999999999999999999999763 3589999999999999999999999987
Q ss_pred CCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEE
Q 010324 390 PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYC 468 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 468 (513)
+|+..|..++|+|.+ .+++++..|+++++||++.. ..+.+. .+...++++.|+.+-.++++|+-|..+++
T Consensus 332 -----ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk~~~---ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 332 -----GHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQCMKTLE---AHEHFVTSLDFHKTAPYVVTGSVDQTVKV 402 (406)
T ss_pred -----cccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccceeeeccC---CCcceeEEEecCCCCceEEeccccceeee
Confidence 889999999999988 99999999999999999954 444443 35667899999999999999999999999
Q ss_pred EEC
Q 010324 469 FSH 471 (513)
Q Consensus 469 wd~ 471 (513)
|..
T Consensus 403 wEc 405 (406)
T KOG0295|consen 403 WEC 405 (406)
T ss_pred eec
Confidence 974
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-33 Score=226.19 Aligned_cols=243 Identities=21% Similarity=0.329 Sum_probs=212.5
Q ss_pred ccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC
Q 010324 259 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 338 (513)
Q Consensus 259 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 338 (513)
.+..|.++|..+.|+-+|+|.++|+.|.+|++|+...|.+++++. +|...|..++.+.|+..|++|+.|..+.+||+.+
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 456689999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC
Q 010324 339 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK 418 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 418 (513)
|+..+++.+|.+.|+.+.|+.+...+++|+.|.++++||.++.. +++...+......|.++.... ..+++|+.
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~~---heIvaGS~ 163 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVAE---HEIVAGSV 163 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC----CCccchhhhhcCceeEEEecc---cEEEeecc
Confidence 99999999999999999999999999999999999999998753 222222224456788887754 78999999
Q ss_pred CCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeE--EEEEcCCC
Q 010324 419 TSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI--GVTHHPHR 496 (513)
Q Consensus 419 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~--~~~~~p~~ 496 (513)
||+++.||++......-. .+.+|++++|+++++...+++-|+++++.|-.+|+++..+++|.+.-. ..+++...
T Consensus 164 DGtvRtydiR~G~l~sDy----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDY----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred CCcEEEEEeecceeehhh----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence 999999999944333222 245699999999999999999999999999999999999999986543 45566667
Q ss_pred CEEEEEECCCeEEeccC
Q 010324 497 NLLATYGEDCTMKLWKP 513 (513)
Q Consensus 497 ~~l~s~~~dg~i~iWdp 513 (513)
..+++||.||.|.+||.
T Consensus 240 thV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDL 256 (307)
T ss_pred eeEEeccCCceEEEEEe
Confidence 89999999999999983
No 49
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=256.50 Aligned_cols=319 Identities=21% Similarity=0.281 Sum_probs=260.6
Q ss_pred cCCCCCCCceeeccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccc
Q 010324 174 QGLLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQ 253 (513)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~ 253 (513)
.|..+..+...+..|.......+++.......-++. ||+..|+++.|+..|..||+||.|+.| ++||+-......
T Consensus 69 t~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfn-gHK~AVt~l~fd~~G~rlaSGskDt~I-IvwDlV~E~Gl~--- 143 (888)
T KOG0306|consen 69 TCLRSSDDILLLAVGYADGSVQIFSLESEEILITFN-GHKAAVTTLKFDKIGTRLASGSKDTDI-IVWDLVGEEGLF--- 143 (888)
T ss_pred EEeeccCCcceEEEEecCceEEeeccCCCceeeeec-ccccceEEEEEcccCceEeecCCCccE-EEEEeccceeeE---
Confidence 455554445555556666666777777666666665 999999999999999999999999999 699997655443
Q ss_pred cccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecc------------------------------
Q 010324 254 YQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE------------------------------ 303 (513)
Q Consensus 254 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------------------------ 303 (513)
.+.||...|+.+-|..+.+++++++.|+.|++||+++..+..+..
T Consensus 144 -----rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 144 -----RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWEL 218 (888)
T ss_pred -----EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence 455799999999998888899999999999999987655432221
Q ss_pred --------------------------------------------------------------------------------
Q 010324 304 -------------------------------------------------------------------------------- 303 (513)
Q Consensus 304 -------------------------------------------------------------------------------- 303 (513)
T Consensus 219 ~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e 298 (888)
T KOG0306|consen 219 AFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEE 298 (888)
T ss_pred ecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccc
Confidence
Q ss_pred -----------------------------------------------------------------------cccccCeEE
Q 010324 304 -----------------------------------------------------------------------RAHSEGVTS 312 (513)
Q Consensus 304 -----------------------------------------------------------------------~~~~~~v~~ 312 (513)
.+|...|.+
T Consensus 299 ~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRs 378 (888)
T KOG0306|consen 299 NEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRS 378 (888)
T ss_pred cccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeE
Confidence 356777888
Q ss_pred EEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCC
Q 010324 313 LVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPP 392 (513)
Q Consensus 313 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 392 (513)
++++.+...+++|+ .+.+++|+..+.+++.++... .+.+..|.|.++++++|...|.+.+||+.+...+.++.
T Consensus 379 l~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~---- 451 (888)
T KOG0306|consen 379 LCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR---- 451 (888)
T ss_pred EEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh----
Confidence 88887765555554 688999999999999988754 78899999999999999999999999999887766655
Q ss_pred CCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC------eEEEEeecC----ccCCCcEEEEEECCCCCEEEEEec
Q 010324 393 LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG------QVVKSFSSG----KREGGDFVAACVSPKGEWIYCVGE 462 (513)
Q Consensus 393 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~~----~~~~~~~~~~~~s~~~~~l~~g~~ 462 (513)
+|++.+.+++..|++ ..+++++.|.+|++||..- ...+.+... ..-...+.++.+||||++|+++--
T Consensus 452 --AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL 528 (888)
T KOG0306|consen 452 --AHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL 528 (888)
T ss_pred --ccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec
Confidence 789999999999998 8999999999999999851 111111111 112456889999999999999999
Q ss_pred CceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 463 DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 463 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
|++|.+|-+.+-+..-.+.||.-||.|+..+||+.+++|||.|..|+||-
T Consensus 529 dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 529 DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred cCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 99999999999999999999999999999999999999999999999994
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.1e-32 Score=264.07 Aligned_cols=242 Identities=30% Similarity=0.555 Sum_probs=216.9
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc--eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEec-CCC
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ--CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL-KSG 339 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~ 339 (513)
+...|.++.|+|+|+.+++++.|+.+++|+..+++ ....+. +|...|.+++|+|++.++++++.|++|++||+ ..+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence 47899999999999999999999999999997777 566664 89999999999999999999999999999999 555
Q ss_pred ceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC
Q 010324 340 KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT 419 (513)
Q Consensus 340 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 419 (513)
..++++.+|...|++++|+|+|+.+++|+.|++|++||++++++...+. +|...|+++++.+++ ..+++++.|
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~------~hs~~is~~~f~~d~-~~l~s~s~d 309 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK------GHSDGISGLAFSPDG-NLLVSASYD 309 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee------ccCCceEEEEECCCC-CEEEEcCCC
Confidence 8899999999999999999999999999999999999999999988887 788899999999988 888889999
Q ss_pred CcEEEEEccCeE---EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCC---eEEEEEc
Q 010324 420 SSIYIMTLQGQV---VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD---VIGVTHH 493 (513)
Q Consensus 420 ~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~---v~~~~~~ 493 (513)
+.|++||+.... ...+....... .+..++|+|++.++++++.|+.+++||+..+.....+.+|... +.+...+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 999999999555 34444444333 7899999999999999999999999999999999999999874 4445557
Q ss_pred CCCCEEEEEECCCeEEeccC
Q 010324 494 PHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 494 p~~~~l~s~~~dg~i~iWdp 513 (513)
+.+.++++|+.|+.|.+|++
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred CCCCeEEEEeCCceEEEEeC
Confidence 78999999999999999985
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-32 Score=225.76 Aligned_cols=282 Identities=16% Similarity=0.266 Sum_probs=227.9
Q ss_pred eEEEECC-CCCEEEEEe-------cCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC-CCEEEEEeCCCc
Q 010324 217 ECARFSP-DGQFLVSCS-------FDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-SEMLASGSQDGK 287 (513)
Q Consensus 217 ~~~~~s~-~g~~la~g~-------~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~ 287 (513)
.++.||| -.++||++. ..|++ +|-+...+..+.... .+ .-.+.+..++|+++ .+.+++++.||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L-~ile~~~~~gi~e~~-----s~-d~~D~LfdV~Wse~~e~~~~~a~GDGS 84 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRL-FILEVTDPKGIQECQ-----SY-DTEDGLFDVAWSENHENQVIAASGDGS 84 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceE-EEEecCCCCCeEEEE-----ee-ecccceeEeeecCCCcceEEEEecCce
Confidence 5788999 233444432 46888 588886444333221 11 14678999999994 567888999999
Q ss_pred EEEEEcCC-cceeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEcc-CCCEE
Q 010324 288 IKVWRIRS-GQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN-DGSRV 364 (513)
Q Consensus 288 i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 364 (513)
+++||+.. ..++..++ .|...|.++.|++ ++..+++++.|++|++|+..-++.+.++.+|...|....|+| .++.+
T Consensus 85 Lrl~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 85 LRLFDLTMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred EEEeccCCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeE
Confidence 99999653 34667776 8999999999998 566788899999999999999999999999999999999999 67899
Q ss_pred EEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCc
Q 010324 365 VTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGD 444 (513)
Q Consensus 365 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 444 (513)
++++.||++++||++.......++ .|...+.++.|+..+...+++++.|+.|+.||++.-....+ ....|+-.
T Consensus 164 as~Sgd~~l~lwdvr~~gk~~~i~------ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~-eL~gh~~A 236 (311)
T KOG0277|consen 164 ASASGDGTLRLWDVRSPGKFMSIE------AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF-ELNGHGLA 236 (311)
T ss_pred EEccCCceEEEEEecCCCceeEEE------eccceeEeecccccCCcEEEecCCCceEEEEehhhccccce-eecCCceE
Confidence 999999999999998754333344 67789999999999999999999999999999984332222 22456778
Q ss_pred EEEEEECCCC-CEEEEEecCceEEEEECCCc-eeeEeeecccCCeEEEEEcC-CCCEEEEEECCCeEEeccC
Q 010324 445 FVAACVSPKG-EWIYCVGEDRNLYCFSHQSG-KLEHLMKVHEKDVIGVTHHP-HRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 445 ~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iWdp 513 (513)
|..+.|||.. ..|++++.|-+++|||...+ ..+.+...|+.-|..+.|++ ++.++|+++.|+.++||+|
T Consensus 237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 237 VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999999974 57889999999999998744 45667778999999999999 6789999999999999997
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-31 Score=222.10 Aligned_cols=245 Identities=20% Similarity=0.360 Sum_probs=206.7
Q ss_pred cccccCCccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCC---cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEE
Q 010324 258 ETFMMHDETVLCIEFSRD-SEMLASGSQDGKIKVWRIRS---GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARI 333 (513)
Q Consensus 258 ~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 333 (513)
+.+.+|.+.+..++|+|- |..||+|+.|+.|++|+... -.+...+..+|+..|++++|+|.|++|++|+.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 356679999999999997 88999999999999999874 44566666789999999999999999999999999999
Q ss_pred EecCCC--ceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCC
Q 010324 334 HGLKSG--KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 411 (513)
Q Consensus 334 ~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (513)
|.-..+ +++..+.+|...|.+++|+++|++|++++.|+.|-||.+..+...... ..+..|...|..+.|+|.. .
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~---aVL~~HtqDVK~V~WHPt~-d 163 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI---AVLQEHTQDVKHVIWHPTE-D 163 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE---eeeccccccccEEEEcCCc-c
Confidence 986544 678899999999999999999999999999999999998855433222 2334788899999999987 9
Q ss_pred eEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEE
Q 010324 412 HIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGV 490 (513)
Q Consensus 412 ~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 490 (513)
+|++++.|.+|++|.-. +..-........+...+.+++|++.|..|++++.|++|+||-..+. .-..|..++..+
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v 239 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDV 239 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEee
Confidence 99999999999999887 5433333333445568999999999999999999999999986532 122478899999
Q ss_pred EEcCCCCEEEEEECCCeEEecc
Q 010324 491 THHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 491 ~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.|. ...|+|++.|+.|+++.
T Consensus 240 ~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 240 PWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred eec--ccceEeccCCCEEEEEE
Confidence 997 56899999999999974
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.3e-32 Score=228.15 Aligned_cols=247 Identities=22% Similarity=0.363 Sum_probs=210.7
Q ss_pred cccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEE
Q 010324 256 ADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS-GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIH 334 (513)
Q Consensus 256 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 334 (513)
+...+.+|.+.|+.+.|+|+|.+||+|+.|..|.+|++.. .+-...++ +|.+.|..+.|.+|++.+++++.|.+|+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4456788999999999999999999999999999999643 33344554 899999999999999999999999999999
Q ss_pred ecCCCceeeEecccccceeEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeE
Q 010324 335 GLKSGKLLKEFRGHSSYVNDAIFTNDGS-RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 413 (513)
Q Consensus 335 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 413 (513)
|+++|+.+.++++|...|+++.-+.-|. ++.+++.||++++||+++...++++. ....++++.|...+ ..+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-------~kyqltAv~f~d~s-~qv 189 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-------NKYQLTAVGFKDTS-DQV 189 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------cceeEEEEEecccc-cce
Confidence 9999999999999999999998655555 55677889999999999988888775 34588999998877 889
Q ss_pred EEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc----eeeEeeecccC----
Q 010324 414 VVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG----KLEHLMKVHEK---- 485 (513)
Q Consensus 414 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~---- 485 (513)
.+|+-|+.|++||++.........+ +..+|+.+..+++|.++.+-+.|.++++||++.. +++..+.+|..
T Consensus 190 ~sggIdn~ikvWd~r~~d~~~~lsG--h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKNDGLYTLSG--HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred eeccccCceeeeccccCcceEEeec--ccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence 9999999999999985444333332 4678999999999999999999999999998753 34677776643
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 486 DVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 486 ~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
....++|+|++..+.+|+.|..+++||.
T Consensus 268 nlL~cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred hcceeeccCCCCccccccccceEEEeec
Confidence 4567899999999999999999999984
No 54
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-32 Score=253.29 Aligned_cols=280 Identities=20% Similarity=0.312 Sum_probs=247.5
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 289 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 289 (513)
.||...|.++++|.+...+++|+. ++++ +|+..+.+.+.++. .+.+.+..|.|.++++++|...|.+.
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga~-~Sik-iWn~~t~kciRTi~----------~~y~l~~~Fvpgd~~Iv~G~k~Gel~ 437 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGAG-ESIK-IWNRDTLKCIRTIT----------CGYILASKFVPGDRYIVLGTKNGELQ 437 (888)
T ss_pred ccchhheeEEEeecCceeeeecCC-CcEE-EEEccCcceeEEec----------cccEEEEEecCCCceEEEeccCCceE
Confidence 499999999999999988888874 5675 99999988887664 34789999999999999999999999
Q ss_pred EEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC-----Cceee--Eec-----ccccceeEEEE
Q 010324 290 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS-----GKLLK--EFR-----GHSSYVNDAIF 357 (513)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~--~~~-----~~~~~v~~~~~ 357 (513)
++|+.+...+.++. .|.+.|++++.+||+..+++|+.|.+|++||..- |...+ .+. .....|.|+.+
T Consensus 438 vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~ 516 (888)
T KOG0306|consen 438 VFDLASASLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV 516 (888)
T ss_pred EEEeehhhhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE
Confidence 99999999888887 9999999999999999999999999999999741 21111 111 13567999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEee
Q 010324 358 TNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFS 436 (513)
Q Consensus 358 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~ 436 (513)
||||++|+++--|.++++|-+.+.+..-++ .+|.-+|.++..+|++ .++++|+.|.+|++|-++ |..-+.+.
T Consensus 517 Spdgk~LaVsLLdnTVkVyflDtlKFflsL------YGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~f 589 (888)
T KOG0306|consen 517 SPDGKLLAVSLLDNTVKVYFLDTLKFFLSL------YGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSFF 589 (888)
T ss_pred cCCCcEEEEEeccCeEEEEEecceeeeeee------cccccceeEEeccCCc-CeEEeccCCCceEEeccccchhhhhhh
Confidence 999999999999999999999887655544 4899999999999998 999999999999999999 66666666
Q ss_pred cCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 437 SGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 437 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
. |...+.++.|-|....+++++.|+.|+-||-...+.+..+.+|...|+|++.+|+|.+++|+|.|.+|++|.
T Consensus 590 A---HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 590 A---HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred c---ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 5 456799999999999999999999999999999999999999999999999999999999999999999995
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-32 Score=251.85 Aligned_cols=244 Identities=20% Similarity=0.372 Sum_probs=223.4
Q ss_pred ccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC
Q 010324 259 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 338 (513)
Q Consensus 259 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 338 (513)
++..++..|.++.++|...+++++-.+|.|.|||.++...++.+. ...-+|++..|-+..+.+++|+.|..|++|+.++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe-V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE-VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee-ecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 444589999999999999999999999999999999999999997 6788999999999999999999999999999999
Q ss_pred CceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc
Q 010324 339 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN 417 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 417 (513)
++.+..|.+|...|.+++.+|...+++++++|-+|++||.+.+ .+.++++ +|..-|.+++++|.+++.+++++
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe------GH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE------GHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc------CcceEEEEEEecCCCccceeeee
Confidence 9999999999999999999999999999999999999999864 4555665 88999999999999999999999
Q ss_pred CCCcEEEEEccC-eEEEEeecCccCCCcEEEEEECCCC--CEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcC
Q 010324 418 KTSSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSPKG--EWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494 (513)
Q Consensus 418 ~~~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p 494 (513)
-|++|++|.+.. ....++.. |...|.++++-+.| .+|++|++|..|+|||..+..+++++.+|...|+.+.|+|
T Consensus 161 LDrTVKVWslgs~~~nfTl~g---HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEG---HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred ccccEEEEEcCCCCCceeeec---cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence 999999999973 34444443 45678999996644 6999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCeEEecc
Q 010324 495 HRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 495 ~~~~l~s~~~dg~i~iWd 512 (513)
.-++++|||.||+|+||.
T Consensus 238 ~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWN 255 (794)
T ss_pred CCcEEEEecCCccEEEec
Confidence 999999999999999996
No 56
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.8e-32 Score=244.30 Aligned_cols=302 Identities=16% Similarity=0.250 Sum_probs=231.9
Q ss_pred cCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCE
Q 010324 199 MYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM 278 (513)
Q Consensus 199 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 278 (513)
..|....-.++ +|+..|.++++.|.|-.+++|+.|-+|+ +||+......... +... ...-...|+++.|++.|..
T Consensus 154 ~IP~shEi~l~-hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~-~wDf~gMdas~~~-fr~l--~P~E~h~i~sl~ys~Tg~~ 228 (641)
T KOG0772|consen 154 LIPGSHEIQLK-HGTKIVSALAVDPSGARFVSGSLDYTVK-FWDFQGMDASMRS-FRQL--QPCETHQINSLQYSVTGDQ 228 (641)
T ss_pred cCCccceEecc-CCceEEEEeeecCCCceeeeccccceEE-EEecccccccchh-hhcc--CcccccccceeeecCCCCe
Confidence 34554444444 6777899999999999999999999998 9999754322211 1111 1123567999999999999
Q ss_pred EEEEeCCCcEEEEEcCCcceeeec------------ccccccCeEEEEEccCC-CEEEEeeCCCcEEEEecCCCce-eeE
Q 010324 279 LASGSQDGKIKVWRIRSGQCLRRL------------ERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKL-LKE 344 (513)
Q Consensus 279 l~s~~~dg~i~vwd~~~~~~~~~~------------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-~~~ 344 (513)
|++.+....++|+| +.|..+..+ ..+|...++|.+|+|+. ..+++++.||++++||+...+. ...
T Consensus 229 iLvvsg~aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV 307 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV 307 (641)
T ss_pred EEEEecCcceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE
Confidence 99888888999999 444433222 14788999999999954 5788999999999999976543 223
Q ss_pred ec-----ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCc--eeeEEEecCCCCCeEEEEc
Q 010324 345 FR-----GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA--SVNSVHLFPKNPDHIVVCN 417 (513)
Q Consensus 345 ~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~ 417 (513)
++ +..-+++.++|+++|+.+++|+.||.|.+|+..+......+... .+|.. .|+++.|++++ ++|++-+
T Consensus 308 ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk---~AH~~g~~Itsi~FS~dg-~~LlSRg 383 (641)
T KOG0772|consen 308 IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK---DAHLPGQDITSISFSYDG-NYLLSRG 383 (641)
T ss_pred EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEee---eccCCCCceeEEEecccc-chhhhcc
Confidence 32 23457899999999999999999999999998654322222211 24544 89999999998 9999999
Q ss_pred CCCcEEEEEcc--CeEEEEeecCccCCCcEEEEEECCCCCEEEEEec------CceEEEEECCCceeeEeeecccCCeEE
Q 010324 418 KTSSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGE------DRNLYCFSHQSGKLEHLMKVHEKDVIG 489 (513)
Q Consensus 418 ~~~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~ 489 (513)
.|+.+++||++ .+.+...... ....+-+.+||||+.++|++|+. .|.+++||..+-..+..+......|..
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~ 462 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVR 462 (641)
T ss_pred CCCceeeeeccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEE
Confidence 99999999998 3344333332 23445678999999999999973 578999999999999888888889999
Q ss_pred EEEcCCCCEEEEEECCCeEEec
Q 010324 490 VTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 490 ~~~~p~~~~l~s~~~dg~i~iW 511 (513)
+.|||.-+.|..|+.||++++|
T Consensus 463 ~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 463 CLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EeecchhhheeeecCCCceEEE
Confidence 9999988888889999999874
No 57
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.6e-30 Score=228.43 Aligned_cols=282 Identities=21% Similarity=0.305 Sum_probs=243.9
Q ss_pred ccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 212 TKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
....+.++...|....+++|+.|..+ +++|...++... .+.||...|+.+.++|+...+++++.|..|+||
T Consensus 218 ~~pgi~ald~~~s~~~ilTGG~d~~a-v~~d~~s~q~l~--------~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 218 STPGITALDIIPSSSKILTGGEDKTA-VLFDKPSNQILA--------TLKGHTKKITSVKFHKDLDTVITASADEIIRVW 288 (506)
T ss_pred CCCCeeEEeecCCCCcceecCCCCce-EEEecchhhhhh--------hccCcceEEEEEEeccchhheeecCCcceEEee
Confidence 34567888888887899999999888 599998887665 556799999999999999999999999999999
Q ss_pred EcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccc--ccceeEEEEccCCCEEEEEeC
Q 010324 292 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH--SSYVNDAIFTNDGSRVVTASS 369 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~ 369 (513)
............ .|..+|+.+..+|.|.||++++.||+..+.|++++..+...... .-.+++.+|+|||..|.+|..
T Consensus 289 s~~~~s~~~~~~-~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~ 367 (506)
T KOG0289|consen 289 SVPLSSEPTSSR-PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP 367 (506)
T ss_pred ccccccCccccc-cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC
Confidence 988777666554 89999999999999999999999999999999999988776642 346899999999999999999
Q ss_pred CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEE
Q 010324 370 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAA 448 (513)
Q Consensus 370 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~ 448 (513)
||.++|||+.++.....|. +|.++|..+.|+.++ .+++++..|+.|++||++ .+..+.+.... ...+.++
T Consensus 368 d~~vkiwdlks~~~~a~Fp------ght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~--~~~v~s~ 438 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFP------GHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDE--KKEVNSL 438 (506)
T ss_pred CceEEEEEcCCccccccCC------CCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccc--cccceeE
Confidence 9999999999988766665 789999999999887 999999999999999999 44455554433 2368899
Q ss_pred EECCCCCEEEEEecCceEEEEECC--CceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 449 CVSPKGEWIYCVGEDRNLYCFSHQ--SGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 449 ~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+|.+.|.+++.++.|=.|++++-. +...+..+..|.+..+++.|..+.++++++|.|..++++.
T Consensus 439 ~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 439 SFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred EEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 999999999999888888888854 4456777888999999999999999999999999988863
No 58
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-31 Score=247.02 Aligned_cols=273 Identities=21% Similarity=0.323 Sum_probs=237.1
Q ss_pred EEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc
Q 010324 218 CARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ 297 (513)
Q Consensus 218 ~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~ 297 (513)
-+.|+ ..+.||+|... .| ++|+..++.......+ +...|+++.|+++|.+|++|..+|.|.|||..+.+
T Consensus 182 lldWs-s~n~laValg~-~v-ylW~~~s~~v~~l~~~--------~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k 250 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALGQ-SV-YLWSASSGSVTELCSF--------GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK 250 (484)
T ss_pred Hhhcc-cCCeEEEEecc-eE-EEEecCCCceEEeEec--------CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc
Confidence 36788 55678888754 45 5999998885543332 47899999999999999999999999999999999
Q ss_pred eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeE-ecccccceeEEEEccCCCEEEEEeCCCcEEEE
Q 010324 298 CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE-FRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 376 (513)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 376 (513)
.+..+...|...|.+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|++++++|+.|+.+.||
T Consensus 251 ~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iw 328 (484)
T KOG0305|consen 251 KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIW 328 (484)
T ss_pred ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEec
Confidence 8888874499999999997 67899999999999999998876665 88899999999999999999999999999999
Q ss_pred eCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc--CCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCC
Q 010324 377 DLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN--KTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPK 453 (513)
Q Consensus 377 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~ 453 (513)
|.....+...+. .|...|..++|+|....+|++|+ .|+.|++||.. +..+..+.. +..|..+.|++.
T Consensus 329 d~~~~~p~~~~~------~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt----gsQVcsL~Wsk~ 398 (484)
T KOG0305|consen 329 DGLSPEPKFTFT------EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT----GSQVCSLIWSKK 398 (484)
T ss_pred cCCCccccEEEe------ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc----CCceeeEEEcCC
Confidence 997666666655 78899999999999999999975 58999999998 555555554 556999999999
Q ss_pred CCEEEEEe--cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 454 GEWIYCVG--EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 454 ~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+-++++. .++.|.||+..+.+++..+.+|...|..++++|||..+++|+.|.++++|+.
T Consensus 399 ~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 399 YKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 87676654 6788999999999999999999999999999999999999999999999973
No 59
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.6e-31 Score=259.22 Aligned_cols=296 Identities=23% Similarity=0.273 Sum_probs=238.2
Q ss_pred cccCceeEEEECCCCCEEEEEe--cCCeEEEEEeccccc----cccccccccccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 211 GTKSHAECARFSPDGQFLVSCS--FDGFIEVVWDYLSGK----LKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~--~dg~i~~iwd~~~~~----~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
++...|.+++.+|||..+|||+ .||.++ ||+.+.-- .....-.........|.+.|+|+.|+|||.+||+|+.
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~-iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIV-IWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccce-eeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 4455699999999999999999 999996 99875311 1111011223345669999999999999999999999
Q ss_pred CCcEEEEEcCC------------------cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEec
Q 010324 285 DGKIKVWRIRS------------------GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR 346 (513)
Q Consensus 285 dg~i~vwd~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 346 (513)
|+.|.||+... .+++..+. +|...|..++|+|++.+|++++.|++|.+|+.++.+.+..+.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 99999999762 12344554 899999999999999999999999999999999999999999
Q ss_pred ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC----CCcE
Q 010324 347 GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK----TSSI 422 (513)
Q Consensus 347 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----~~~i 422 (513)
+|.+.|..+.|.|-|++|++-+.|++|++|++.+....+.+..+............+.|+|++ .++++... ...+
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTI 247 (942)
T ss_pred cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc-CeecchhhccCCccee
Confidence 999999999999999999999999999999988877777777666555666788999999999 67666542 2457
Q ss_pred EEEEccCeEEEEeecCccCCCcEEEEEECCC-------------CC----EEEEEecCceEEEEECCCceeeEeee-ccc
Q 010324 423 YIMTLQGQVVKSFSSGKREGGDFVAACVSPK-------------GE----WIYCVGEDRNLYCFSHQSGKLEHLMK-VHE 484 (513)
Q Consensus 423 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~-------------~~----~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~ 484 (513)
.+.+-.+........ .|.+++.++.|+|. .. .+|+|+.|++|.||.....+++.... -..
T Consensus 248 ~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred EEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence 777765444333333 24568899999872 11 67899999999999987777765543 235
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 485 KDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 485 ~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
..|.+++|+|||..|..||.||+|.+.
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 789999999999999999999999875
No 60
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2e-30 Score=250.12 Aligned_cols=272 Identities=15% Similarity=0.222 Sum_probs=206.7
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEecccccccccccc-----ccccccccCCccEEEEEEcC-CCCEEEEEeCCCc
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQY-----QADETFMMHDETVLCIEFSR-DSEMLASGSQDGK 287 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~-----~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~ 287 (513)
..|.....++++..+++++.+... +.|+...+..+..... .....+.+|.+.|.+++|+| ++++|++|+.|++
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a-~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIA-VPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eccccccccCCCCCcEeECCceEE-EEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 445566677777667777777666 3777554432211100 11124678999999999999 8899999999999
Q ss_pred EEEEEcCCcc-------eeeecccccccCeEEEEEccCC-CEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEcc
Q 010324 288 IKVWRIRSGQ-------CLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 359 (513)
Q Consensus 288 i~vwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 359 (513)
|++||+.++. .+..+. +|...|.+++|+|++ ++|++|+.|++|++||+++++.+..+..|...|.+++|+|
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999997653 345555 799999999999975 6899999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCc-eeeEEEecCCCCCeEEEE---cCCCcEEEEEccCe--EEE
Q 010324 360 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA-SVNSVHLFPKNPDHIVVC---NKTSSIYIMTLQGQ--VVK 433 (513)
Q Consensus 360 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~---~~~~~i~i~d~~~~--~~~ 433 (513)
+|..|++++.||.|++||+++++.+..+. +|.. ....+.|.+++..++.++ +.|+.|++||++.. ...
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~------~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVE------AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEe------cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 99999999999999999999998877765 3333 234677888764444444 34789999999832 222
Q ss_pred EeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeec-ccCCeEEEEEcCC
Q 010324 434 SFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKV-HEKDVIGVTHHPH 495 (513)
Q Consensus 434 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~ 495 (513)
..... ....+....|+++++++++|+ .||.|++||+.++++...... +..++.+++|.|.
T Consensus 253 ~~~~d--~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 253 TVDLD--QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EeccC--CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 22211 223455677899999999888 599999999999988766544 4456788888885
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.1e-33 Score=245.87 Aligned_cols=247 Identities=20% Similarity=0.380 Sum_probs=214.3
Q ss_pred ccccccccCCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEE
Q 010324 255 QADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKVWRIRS-GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTAR 332 (513)
Q Consensus 255 ~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 332 (513)
....++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +.+++++. +|..+|.+++|+++|..+++++.|+.|+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeeecceeee
Confidence 34557889999999999999 899999999999999999976 88999997 9999999999999999999999999999
Q ss_pred EEecCCCceeeEecccccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCC
Q 010324 333 IHGLKSGKLLKEFRGHSSYVNDAIFTNDG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 411 (513)
Q Consensus 333 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (513)
+||+++|+++..+. ....++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+. .|-+.+..+.|.+.+ .
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd------~hLg~i~~i~F~~~g-~ 355 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD------RHLGAILDITFVDEG-R 355 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH------hhhhheeeeEEccCC-c
Confidence 99999999999887 45578999999988 899999999999999999999888776 566799999999988 8
Q ss_pred eEEEEcCCCcEEEEEccCeE-EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc---eeeEeeeccc--C
Q 010324 412 HIVVCNKTSSIYIMTLQGQV-VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG---KLEHLMKVHE--K 485 (513)
Q Consensus 412 ~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~--~ 485 (513)
.+++++.++.+++|+.+-.. ++...... .....++..+|++.++++-+.|+.|.+|.+... .....+.+|. +
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 99999999999999998443 33333322 223568889999999999999999999997543 2335567775 4
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 486 DVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 486 ~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
--..+.|||||.+|++|+.||.+.+||
T Consensus 434 ys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred ceeeEEEcCCCCeEEeecCCccEEEee
Confidence 466789999999999999999999998
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.5e-30 Score=239.05 Aligned_cols=244 Identities=33% Similarity=0.588 Sum_probs=216.5
Q ss_pred ccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC
Q 010324 259 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 338 (513)
Q Consensus 259 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 338 (513)
.+.+|..+|.+++|+|++++|++++.||.+++|++.+++....+. .|...+..+.|+|+++.+++++.||.|++||+.+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 456799999999999999999999999999999999888777765 7888899999999999999999999999999998
Q ss_pred CceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC
Q 010324 339 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK 418 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 418 (513)
++.+..+..|...+.++.|+++++++++++.||.|.+||+++++....+. .+...+.++.++|++ .++++++.
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~-~~l~~~~~ 155 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR------GHTDWVNSVAFSPDG-TFVASSSQ 155 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec------cCCCcEEEEEEcCcC-CEEEEEcC
Confidence 88888888898899999999998888888889999999999887776665 456789999999984 78888888
Q ss_pred CCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCC
Q 010324 419 TSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN 497 (513)
Q Consensus 419 ~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~ 497 (513)
++.+++||++ +.....+. .+...+.+++|+|+++.+++++.+|.|++||+.+++.+..+..|...+.++.|+|++.
T Consensus 156 ~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 232 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY 232 (289)
T ss_pred CCcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCc
Confidence 9999999998 44444444 2345789999999999999999999999999999999998888999999999999988
Q ss_pred EEEEEECCCeEEeccC
Q 010324 498 LLATYGEDCTMKLWKP 513 (513)
Q Consensus 498 ~l~s~~~dg~i~iWdp 513 (513)
++++++.||.|++||.
T Consensus 233 ~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 233 LLASGSEDGTIRVWDL 248 (289)
T ss_pred EEEEEcCCCcEEEEEc
Confidence 9998888999999984
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.2e-30 Score=270.26 Aligned_cols=263 Identities=17% Similarity=0.257 Sum_probs=216.7
Q ss_pred CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCc----c----eeeecccc
Q 010324 234 DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG----Q----CLRRLERA 305 (513)
Q Consensus 234 dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~----~----~~~~~~~~ 305 (513)
+|..+ +|+..+......+. ...+..|.+.|.+++|+|+|+++|+|+.|+.|+|||+.+. . ....+ .
T Consensus 457 ~gl~~-~~~~~~~~~~~~~~---~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~ 530 (793)
T PLN00181 457 EGLCK-YLSFSKLRVKADLK---QGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--A 530 (793)
T ss_pred hhhhh-hhcccceEEEEeec---cccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--c
Confidence 56676 78776554433222 1234558999999999999999999999999999997542 1 11222 2
Q ss_pred cccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCce
Q 010324 306 HSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDC 383 (513)
Q Consensus 306 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 383 (513)
+...+.+++|+| ++.+|++++.||+|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||.|++||++++..
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 456799999987 478999999999999999999999999999999999999997 788999999999999999999888
Q ss_pred eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe--EEEEeecCccCCCcEEEEEECCCCCEEEEEe
Q 010324 384 LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ--VVKSFSSGKREGGDFVAACVSPKGEWIYCVG 461 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 461 (513)
+..+.. ...+.++.|.+.++..+++|+.|+.|++||++.. ....+. .|...+..+.|. ++.++++++
T Consensus 611 ~~~~~~-------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~---~h~~~V~~v~f~-~~~~lvs~s 679 (793)
T PLN00181 611 IGTIKT-------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI---GHSKTVSYVRFV-DSSTLVSSS 679 (793)
T ss_pred EEEEec-------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec---CCCCCEEEEEEe-CCCEEEEEE
Confidence 777652 2468899997776699999999999999999743 222332 356678999997 788999999
Q ss_pred cCceEEEEECCC------ceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 462 EDRNLYCFSHQS------GKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 462 ~dg~i~iwd~~~------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.|+.|++||+.. ..++..+.+|...+++++|+|++.+|++|+.||.|++|+.
T Consensus 680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 999999999974 3567888999999999999999999999999999999983
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-31 Score=254.51 Aligned_cols=244 Identities=21% Similarity=0.379 Sum_probs=220.9
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce
Q 010324 262 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 341 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 341 (513)
..+..|..++|+|...+++++-..|.|++||.+-+.++.+|. .|.++|..++|+|++..+++|+.|-.|++|+.++.++
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence 357889999999999999999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred eeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc
Q 010324 342 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 421 (513)
Q Consensus 342 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 421 (513)
+.++.+|-..|..+.|++.-.+++++++|.+|+||+..+++++..+. +|...|.|..|+|.. ..+++++-|.+
T Consensus 86 lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt------GHnHYVMcAqFhptE-DlIVSaSLDQT 158 (1202)
T KOG0292|consen 86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT------GHNHYVMCAQFHPTE-DLIVSASLDQT 158 (1202)
T ss_pred hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe------cCceEEEeeccCCcc-ceEEEecccce
Confidence 99999999999999999999999999999999999999999999886 889999999999977 89999999999
Q ss_pred EEEEEccCeEEEEeec---------------------------CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc
Q 010324 422 IYIMTLQGQVVKSFSS---------------------------GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 422 i~i~d~~~~~~~~~~~---------------------------~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 474 (513)
|++||+.|-..+.... ...|...|+-++|+|.-..+++|++|..|++|.+...
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 9999987422211111 1234566888999999999999999999999998765
Q ss_pred e--eeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 475 K--LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 475 ~--~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+ .+.+..+|.+.|.++-|+|..++++|.|.|++|+|||.
T Consensus 239 KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 4 35677899999999999999999999999999999984
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-30 Score=231.36 Aligned_cols=275 Identities=21% Similarity=0.309 Sum_probs=226.3
Q ss_pred cCceeEEEECCCCC-EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 213 KSHAECARFSPDGQ-FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 213 ~~~v~~~~~s~~g~-~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
.+.|++++|||... -+|+.+. -.+. +|+..+....+.+. .....|.++.|-.||++||+|+..|.|+|+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvq-ly~~~~~~~~k~~s--------rFk~~v~s~~fR~DG~LlaaGD~sG~V~vf 95 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQ-LYSSVTRSVRKTFS--------RFKDVVYSVDFRSDGRLLAAGDESGHVKVF 95 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEE-EEecchhhhhhhHH--------hhccceeEEEeecCCeEEEccCCcCcEEEe
Confidence 46799999999554 3555443 4565 89887766554332 257889999999999999999999999999
Q ss_pred EcCCcceeeecccccccCeEEEEEccC-CCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccC-CCEEEEEeC
Q 010324 292 RIRSGQCLRRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND-GSRVVTASS 369 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 369 (513)
|..+...++.+. +|..++..+.|+|+ +..+++|+.|+.+++||+.+......+.+|+..|.|.+|+|. +..+++|+.
T Consensus 96 D~k~r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 96 DMKSRVILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred ccccHHHHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC
Confidence 977766666776 89999999999995 556778888999999999988877789999999999999995 458999999
Q ss_pred CCcEEEEeCCCC-ceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEE
Q 010324 370 DCTVKVWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVA 447 (513)
Q Consensus 370 dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~ 447 (513)
||.|++||+++. ..+.++ .|..+|.++.+.|.+ ..+++++ ...+++||+. |........ .|...|+|
T Consensus 175 Dg~vrl~DtR~~~~~v~el-------nhg~pVe~vl~lpsg-s~iasAg-Gn~vkVWDl~~G~qll~~~~--~H~KtVTc 243 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVEL-------NHGCPVESVLALPSG-SLIASAG-GNSVKVWDLTTGGQLLTSMF--NHNKTVTC 243 (487)
T ss_pred CceEEEEEeccCCceeEEe-------cCCCceeeEEEcCCC-CEEEEcC-CCeEEEEEecCCceehhhhh--cccceEEE
Confidence 999999999987 555555 477899999999986 5665554 5689999998 443332222 25678999
Q ss_pred EEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 448 ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 448 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
+++..++..|++|+-|+.|++||+.+-+.+..+. ..++|.+++.+|+++.++.|..||.+.+
T Consensus 244 L~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 244 LRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred EEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence 9999999999999999999999999889888886 4689999999999999999999998754
No 66
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=4e-30 Score=215.90 Aligned_cols=276 Identities=17% Similarity=0.249 Sum_probs=220.6
Q ss_pred eeccccCceeEEEECC-CCCEEEEEecCCeEEEEEeccc-cccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC
Q 010324 208 IKFGTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLS-GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285 (513)
Q Consensus 208 ~~~~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 285 (513)
+...-.+.|.+++||| ...++++||.||+|| +|+++. |.... +....|.++|.+++|+.||..+++|+.|
T Consensus 22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR-~wevq~~g~~~~-------ka~~~~~~PvL~v~WsddgskVf~g~~D 93 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVR-IWEVQNSGQLVP-------KAQQSHDGPVLDVCWSDDGSKVFSGGCD 93 (347)
T ss_pred cCCCcccchheeEeccccCceEEecccCCceE-EEEEecCCcccc-------hhhhccCCCeEEEEEccCCceEEeeccC
Confidence 3335667899999999 667777999999999 999987 34332 2334599999999999999999999999
Q ss_pred CcEEEEEcCCcceeeecccccccCeEEEEEccCCC--EEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCE
Q 010324 286 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS--QILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSR 363 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 363 (513)
+.+++||+.+++... +. .|..+|.++.|-+... .|++||.|.+|+.||++...++.++. ...++.++..- ...
T Consensus 94 k~~k~wDL~S~Q~~~-v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm 168 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQ-VA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPM 168 (347)
T ss_pred CceEEEEccCCCeee-ee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--Cce
Confidence 999999999997544 43 6999999999998665 89999999999999999999988877 34456666554 357
Q ss_pred EEEEeCCCcEEEEeCCCCceeEe-ecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eE--EEEeecCc
Q 010324 364 VVTASSDCTVKVWDLKSTDCLQT-FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QV--VKSFSSGK 439 (513)
Q Consensus 364 l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~--~~~~~~~~ 439 (513)
++++..+..|.+|+++++..... ... .....+.+++..++. ...+.|+-+|.+.+..++. .. .-.+.-+.
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~~~S-----pLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR 242 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKRIES-----PLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHR 242 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhhhcC-----cccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCceeEEEec
Confidence 88899999999999987643221 121 134578899999887 5559999999999998873 21 11222111
Q ss_pred c---C---CCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEE
Q 010324 440 R---E---GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATY 502 (513)
Q Consensus 440 ~---~---~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 502 (513)
. . -..|.+++|+|.-..+++++.||+..+||-.....+.....|..+|++..|+.+|.++|.+
T Consensus 243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 1 1 2356789999999999999999999999999888889999999999999999999988865
No 67
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=4.6e-30 Score=220.89 Aligned_cols=265 Identities=18% Similarity=0.293 Sum_probs=217.1
Q ss_pred eccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCC
Q 010324 185 LFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD 264 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~ 264 (513)
...+......-+|+.........+. +|++.|+|+.||.+|.+||||+.+|.|+ ||+..++.....+. ..-
T Consensus 79 ~aTGGgDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~-v~~~stg~~~~~~~--------~e~ 148 (399)
T KOG0296|consen 79 VATGGGDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGDMSGKVL-VFKVSTGGEQWKLD--------QEV 148 (399)
T ss_pred EEecCCCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecCCCccEE-EEEcccCceEEEee--------ccc
Confidence 3445556666788888888777776 9999999999999999999999999996 99999988766543 145
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeE
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE 344 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 344 (513)
..|.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+. +|..++++-.|.|+|+.++++..||+|++|++.++.++..
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~ 227 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHK 227 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEE
Confidence 678899999999999999999999999999987777776 8999999999999999999999999999999999987766
Q ss_pred eccc---------------------------------------------------ccceeEEE---EccCCCEEEEEeCC
Q 010324 345 FRGH---------------------------------------------------SSYVNDAI---FTNDGSRVVTASSD 370 (513)
Q Consensus 345 ~~~~---------------------------------------------------~~~v~~~~---~~~~~~~l~~~~~d 370 (513)
+... ...+.++. ++..=+..++|+.|
T Consensus 228 ~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vd 307 (399)
T KOG0296|consen 228 ITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVD 307 (399)
T ss_pred ecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccccc
Confidence 5410 00111222 22233467889999
Q ss_pred CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEE
Q 010324 371 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAAC 449 (513)
Q Consensus 371 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~ 449 (513)
|+|.|||+...+...... |...|..+.|.+ ..++++++.+|.|+.||.+ |+....+.. |...|..++
T Consensus 308 G~i~iyD~a~~~~R~~c~-------he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~G---H~~~Il~f~ 375 (399)
T KOG0296|consen 308 GTIAIYDLAASTLRHICE-------HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTG---HQMGILDFA 375 (399)
T ss_pred ceEEEEecccchhheecc-------CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEec---CchheeEEE
Confidence 999999998776555543 666899999998 3899999999999999999 555555554 456799999
Q ss_pred ECCCCCEEEEEecCceEEEEECC
Q 010324 450 VSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 450 ~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
++|+++++++++.|++.+||+..
T Consensus 376 ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 376 LSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999864
No 68
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=4.8e-30 Score=227.27 Aligned_cols=290 Identities=19% Similarity=0.301 Sum_probs=235.9
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccc-cc--------ccccccc-ccCCccEEEEEEcCCCCEE
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKD-LQ--------YQADETF-MMHDETVLCIEFSRDSEML 279 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~-~~--------~~~~~~~-~~h~~~v~~l~~~~~~~~l 279 (513)
..|.-.|.|++++|++.+.++++.||+| .-|++.++..... ++ +.+.+.- .+|...|.+++.++||++|
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i-~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTI-LKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcce-eeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence 3899999999999999999999999999 5999998874411 11 1111111 3799999999999999999
Q ss_pred EEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEcc
Q 010324 280 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 359 (513)
Q Consensus 280 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 359 (513)
|+|+.|..|.||+.++.+.++.+. +|...|.+++|-.....+++++.|++|++|++.....+.++-+|.+.|.++....
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~ 296 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS 296 (479)
T ss_pred EecCCCceEEEecCcccchhhccc-ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc
Confidence 999999999999999999999987 9999999999998888999999999999999999999999999999999999888
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecC
Q 010324 360 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSG 438 (513)
Q Consensus 360 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~ 438 (513)
-++.+-+|+.|+++++|++.... ...+. ++.+.+.++++..+ ..+++|+.+|.|.+|++. .+++......
T Consensus 297 reR~vtVGgrDrT~rlwKi~ees-qlifr------g~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~A 367 (479)
T KOG0299|consen 297 RERCVTVGGRDRTVRLWKIPEES-QLIFR------GGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRLA 367 (479)
T ss_pred ccceEEeccccceeEEEeccccc-eeeee------CCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeecc
Confidence 87777777799999999995432 22222 56778999999865 799999999999999997 3333333222
Q ss_pred c---------cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc----eeeEeeecccCCeEEEEEcCCCCEEEEE-EC
Q 010324 439 K---------REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG----KLEHLMKVHEKDVIGVTHHPHRNLLATY-GE 504 (513)
Q Consensus 439 ~---------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~-~~ 504 (513)
+ .+...+++++..|....+++|+.+|.|++|-+..+ +++..++ -.+.|++++|+++|..+++| |.
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccc
Confidence 1 11237889999999999999999999999999887 3445554 56789999999999855544 45
Q ss_pred CCeEEec
Q 010324 505 DCTMKLW 511 (513)
Q Consensus 505 dg~i~iW 511 (513)
...+--|
T Consensus 447 EhRlGRW 453 (479)
T KOG0299|consen 447 EHRLGRW 453 (479)
T ss_pred cccccee
Confidence 4444333
No 69
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.1e-31 Score=230.50 Aligned_cols=285 Identities=15% Similarity=0.260 Sum_probs=233.5
Q ss_pred cccceeeeeccccCceeEEEECCCC-CEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEE
Q 010324 201 PTTLSHTIKFGTKSHAECARFSPDG-QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 279 (513)
Q Consensus 201 ~~~~~~~~~~~h~~~v~~~~~s~~g-~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 279 (513)
.......+ .||.+.|.|++=+|.. ..+|+|+.||.|+ |||+........+. .|.+.|..|++.. ..+
T Consensus 55 akPFv~~L-~gHrdGV~~lakhp~~ls~~aSGs~DG~Vk-iWnlsqR~~~~~f~--------AH~G~V~Gi~v~~--~~~ 122 (433)
T KOG0268|consen 55 AKPFVGSL-DGHRDGVSCLAKHPNKLSTVASGSCDGEVK-IWNLSQRECIRTFK--------AHEGLVRGICVTQ--TSF 122 (433)
T ss_pred hccchhhc-cccccccchhhcCcchhhhhhccccCceEE-EEehhhhhhhheee--------cccCceeeEEecc--cce
Confidence 33344455 3999999999999977 7899999999998 99999877665444 4999999999987 678
Q ss_pred EEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEcc
Q 010324 280 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 359 (513)
Q Consensus 280 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 359 (513)
++++.|.+|+.|.+.. .+..++. ..+.+..+.-+..++.+++++. .|.|||..-..++..+.-....|.++.|+|
T Consensus 123 ~tvgdDKtvK~wk~~~-~p~~til--g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 123 FTVGDDKTVKQWKIDG-PPLHTIL--GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred EEecCCcceeeeeccC-Ccceeee--ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCC
Confidence 8999999999999765 4666664 4566777777777778888874 589999988889988887778899999999
Q ss_pred CCC-EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeEEEEee
Q 010324 360 DGS-RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFS 436 (513)
Q Consensus 360 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~ 436 (513)
-.. .|++++.|+.|.+||++++.++..+.. ....+.++|+| ....+++++.|..++.+|++ ...+...
T Consensus 198 vETsILas~~sDrsIvLyD~R~~~Pl~KVi~-------~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~- 268 (433)
T KOG0268|consen 198 VETSILASCASDRSIVLYDLRQASPLKKVIL-------TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVH- 268 (433)
T ss_pred CcchheeeeccCCceEEEecccCCccceeee-------eccccceecCc-cccceeeccccccceehhhhhhcccchhh-
Confidence 554 667777999999999999988776642 34678899999 55889999999999999998 3333333
Q ss_pred cCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeec-ccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 437 SGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 437 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
..|...+..+.|||.|+-+++|+.|.+|+||..+.+.....+.. ....|.++.|+-|.++++|||+|+.|++|++
T Consensus 269 --~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 269 --KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred --cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 34567899999999999999999999999999988765544421 1346999999999999999999999999974
No 70
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.3e-29 Score=212.36 Aligned_cols=246 Identities=20% Similarity=0.360 Sum_probs=214.2
Q ss_pred cccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeC--CCcEEEEe
Q 010324 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF--DSTARIHG 335 (513)
Q Consensus 258 ~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d 335 (513)
+.+......|+++.|+++|.++++++.|.++++||..+|+.++++. .+...+..++|....+.++.++. |.+|+..+
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 3444467899999999999999999999999999999999999997 67778999999887778887776 88999999
Q ss_pred cCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE
Q 010324 336 LKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV 415 (513)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 415 (513)
+.+.+.++.|.+|...|++++.+|-+..+++++.|++|++||++..++...+... .-..+++.|.+ -++++
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--------~~pi~AfDp~G-LifA~ 157 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--------GRPIAAFDPEG-LIFAL 157 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--------CCcceeECCCC-cEEEE
Confidence 9999999999999999999999999999999999999999999988876665432 33456788887 78888
Q ss_pred EcCCCcEEEEEcc---CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCe---EE
Q 010324 416 CNKTSSIYIMTLQ---GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDV---IG 489 (513)
Q Consensus 416 ~~~~~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v---~~ 489 (513)
+.....|++||++ ..+...+..........+.+.|||||++++.++..+.+++.|.-+|.....+..+...- -.
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 8888899999998 44566666655567789999999999999999999999999999999999988775432 57
Q ss_pred EEEcCCCCEEEEEECCCeEEeccC
Q 010324 490 VTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 490 ~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
..|.||++++++|++||+|.+|+.
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEc
Confidence 889999999999999999999973
No 71
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=4.4e-30 Score=216.76 Aligned_cols=293 Identities=19% Similarity=0.379 Sum_probs=227.5
Q ss_pred cCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCE
Q 010324 199 MYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM 278 (513)
Q Consensus 199 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 278 (513)
.+|..+.+++..+| ..|+.|++.|.+||+|+.||.+ +|||+.+.... +.+.+|..+|.+++||+||+.
T Consensus 12 ~~PEel~~tld~~~---a~~~~Fs~~G~~lAvGc~nG~v-vI~D~~T~~ia--------r~lsaH~~pi~sl~WS~dgr~ 79 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL---AECCQFSRWGDYLAVGCANGRV-VIYDFDTFRIA--------RMLSAHVRPITSLCWSRDGRK 79 (405)
T ss_pred cChHhhceeccCCc---cceEEeccCcceeeeeccCCcE-EEEEccccchh--------hhhhccccceeEEEecCCCCE
Confidence 67888889987666 7899999999999999999999 69999986643 355679999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCC-CEEEEeeCCCcEEEEecCCCceeeEecc----ccccee
Q 010324 279 LASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKLLKEFRG----HSSYVN 353 (513)
Q Consensus 279 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~ 353 (513)
|+++|.|..|.+||+..|.+++.+. ..++|+.+.|+|.. +..++.-.+..-.+.++..++...--.. .+....
T Consensus 80 LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas 157 (405)
T KOG1273|consen 80 LLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSAS 157 (405)
T ss_pred eeeecCCceeEEEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccc
Confidence 9999999999999999999999985 78999999999943 3333433344444555543322111111 112233
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEE
Q 010324 354 DAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVK 433 (513)
Q Consensus 354 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 433 (513)
+..|.+.|+++++|...|.+.++|..+.+++..+.... ...|.++.++..+ ..++..+.|..|+.|+++.-...
T Consensus 158 ~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-----~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 158 HGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-----VQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred cccccCCCCEEEEecCcceEEEEecchheeeeeeeech-----heeeeEEEEeccC-cEEEEecCCceEEEEehhhhccc
Confidence 44689999999999999999999999999888776432 3567788887766 89999999999999998621110
Q ss_pred ----Eee-----cCccCCCcEEEEEECCCCCEEEEEec-CceEEEEECCCceeeEeeeccc-CCeEEEEEcCCCCEEEEE
Q 010324 434 ----SFS-----SGKREGGDFVAACVSPKGEWIYCVGE-DRNLYCFSHQSGKLEHLMKVHE-KDVIGVTHHPHRNLLATY 502 (513)
Q Consensus 434 ----~~~-----~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~ 502 (513)
... ....+.....++|||.+|.|+++|+. ...+|||....|.+++.+.|.. .....+.|+|-...+++-
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 000 00112334568999999999999884 4569999999999999998877 567899999999988888
Q ss_pred ECCCeEEecc
Q 010324 503 GEDCTMKLWK 512 (513)
Q Consensus 503 ~~dg~i~iWd 512 (513)
..|.|+||.
T Consensus 312 -~sg~v~iw~ 320 (405)
T KOG1273|consen 312 -ASGVVYIWA 320 (405)
T ss_pred -cCCceEEEE
Confidence 688999995
No 72
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=1.6e-31 Score=228.24 Aligned_cols=263 Identities=22% Similarity=0.355 Sum_probs=220.3
Q ss_pred ccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCc
Q 010324 186 FRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDE 265 (513)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~ 265 (513)
..|.......+|+.....+.+.+. ||++.|.|+.|. .+.+++|+.|.+|+ +||+++|+.+. ++.+|..
T Consensus 211 VSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd--~rviisGSSDsTvr-vWDv~tge~l~--------tlihHce 278 (499)
T KOG0281|consen 211 VSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYD--ERVIVSGSSDSTVR-VWDVNTGEPLN--------TLIHHCE 278 (499)
T ss_pred hcccccCceEEeccccHHHHHhhh-cCCCcEEeeecc--ceEEEecCCCceEE-EEeccCCchhh--------HHhhhcc
Confidence 345556667788888888888876 999999999995 45999999999997 99999998765 4556999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcce--eeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceee
Q 010324 266 TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC--LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK 343 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 343 (513)
.|..+.|+ +.++++++.|.++.+||+.+... ......+|...|+.+.|+ .+++++++.|.+|++|++.+++.+.
T Consensus 279 aVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvR 354 (499)
T KOG0281|consen 279 AVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVR 354 (499)
T ss_pred eeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeeh
Confidence 99999998 45999999999999999986543 223334899999999995 5699999999999999999999999
Q ss_pred EecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEE
Q 010324 344 EFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 423 (513)
Q Consensus 344 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 423 (513)
.+.+|...|-|+.+. |+++++|+.|.+|++||+..|.+++.++ +|+.-|.++.|.. +.+++|..||+|+
T Consensus 355 tl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLe------GHEeLvRciRFd~---krIVSGaYDGkik 423 (499)
T KOG0281|consen 355 TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE------GHEELVRCIRFDN---KRIVSGAYDGKIK 423 (499)
T ss_pred hhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHh------chHHhhhheeecC---ceeeeccccceEE
Confidence 999999999888875 7899999999999999999999988876 7888999999964 7899999999999
Q ss_pred EEEccCeEEE-------EeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceee
Q 010324 424 IMTLQGQVVK-------SFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE 477 (513)
Q Consensus 424 i~d~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 477 (513)
+||+....-. .+.....+.+.+..+.|. ...+++++.|.+|.|||..++.+-
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 9999733222 222233456678888874 567899999999999999877554
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=8.7e-30 Score=245.72 Aligned_cols=273 Identities=22% Similarity=0.387 Sum_probs=237.7
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
.+...+.|..|. +.++++++.|++++ +||..++..+.. .+.||.+.|.++++..-+.++++|+.|.++++
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~-~~~~~~~~~i~~-------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rv 275 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLH-LWDLNNGYLILT-------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERV 275 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeE-EeecccceEEEe-------eccCCCCCceeEEEecCCCEEEEEecCCcEEe
Confidence 467788999998 66899999999997 999998876542 35679999999999887889999999999999
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCC
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 370 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 370 (513)
||..+|++...+. +|.+.|.++... ...+++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.++++|+.|
T Consensus 276 Wd~~sg~C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d 350 (537)
T KOG0274|consen 276 WDCSTGECTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYD 350 (537)
T ss_pred EecCCCcEEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecC
Confidence 9999999999997 899999998875 5578889999999999999999999999999999999998 7899999999
Q ss_pred CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe--EEEEeecCccCCCcEEEE
Q 010324 371 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ--VVKSFSSGKREGGDFVAA 448 (513)
Q Consensus 371 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~ 448 (513)
|+|++||+.+++++.++. +|...|.++.+.+. ..+++|+.|+.|++||+++. .+..+.. +...+ .
T Consensus 351 ~~v~VW~~~~~~cl~sl~------gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~---h~~~v--~ 417 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLS------GHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQG---HTSLV--S 417 (537)
T ss_pred ceEEEEEhhhceeeeeec------CCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcC---Ccccc--c
Confidence 999999999999998887 78999999977665 89999999999999999965 3333332 22333 3
Q ss_pred EECCCCCEEEEEecCceEEEEECCCceeeEeeec-ccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 449 CVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 449 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.....+++|++++.||.|++||..+++++..+.+ |.+.|..+++. ...+++++.||++++||.
T Consensus 418 ~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 418 SLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred ccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEec
Confidence 4455688999999999999999999999999998 67889998886 567889999999999983
No 74
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.4e-29 Score=211.22 Aligned_cols=277 Identities=18% Similarity=0.252 Sum_probs=224.2
Q ss_pred eeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCC
Q 010324 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG 286 (513)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 286 (513)
.+...-.+.|+.+.|+|.+..|+++++||+++ +||.........+. |..++.+++|.++ ..+++|+.||
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvssWDgslr-lYdv~~~~l~~~~~---------~~~plL~c~F~d~-~~~~~G~~dg 75 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSSWDGSLR-LYDVPANSLKLKFK---------HGAPLLDCAFADE-STIVTGGLDG 75 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEeccCcEE-EEeccchhhhhhee---------cCCceeeeeccCC-ceEEEeccCc
Confidence 34445567899999999999999999999997 99998876555444 8999999999974 5689999999
Q ss_pred cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEE
Q 010324 287 KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVT 366 (513)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 366 (513)
.|+.+|+.++.....- .|..+|.|+.+++....+++|+.|++|++||.+.......+... ..|.++... |+.|++
T Consensus 76 ~vr~~Dln~~~~~~ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~--g~~LvV 150 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS--GNRLVV 150 (323)
T ss_pred eEEEEEecCCcceeec--cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEecc--CCEEEE
Confidence 9999999998865443 69999999999998889999999999999999876555555533 368777765 678999
Q ss_pred EeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-----EEEEeecC---
Q 010324 367 ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-----VVKSFSSG--- 438 (513)
Q Consensus 367 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-----~~~~~~~~--- 438 (513)
|+.|..+.+||+++.....+.. .......+.++++.|+. .-+++++-+|.|.+=.++.. ..-.+.-+
T Consensus 151 g~~~r~v~iyDLRn~~~~~q~r----eS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~ 225 (323)
T KOG1036|consen 151 GTSDRKVLIYDLRNLDEPFQRR----ESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS 225 (323)
T ss_pred eecCceEEEEEcccccchhhhc----cccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecc
Confidence 9999999999999876433221 12446789999999954 88899999999988776632 11111111
Q ss_pred ---ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEEC
Q 010324 439 ---KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE 504 (513)
Q Consensus 439 ---~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 504 (513)
.....+|.+++|+|-...+++|+.||.|.+||..+.+.+..+......|.+++|+.+|..||.++.
T Consensus 226 ~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 226 EKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 112346889999999999999999999999999999999999877788999999999999999873
No 75
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=213.32 Aligned_cols=256 Identities=24% Similarity=0.397 Sum_probs=220.7
Q ss_pred ccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCC
Q 010324 198 DMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE 277 (513)
Q Consensus 198 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 277 (513)
+-....-.-++. ||++.|+....+.+...-|+++.|-+-+ +||.-+|..+..+. |..-|.+++|+.|.+
T Consensus 45 ~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaaadftak-vw~a~tgdelhsf~---------hkhivk~~af~~ds~ 113 (334)
T KOG0278|consen 45 NGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAAADFTAK-VWDAVTGDELHSFE---------HKHIVKAVAFSQDSN 113 (334)
T ss_pred cCCCCCcEEeee-ccCcceeeeecCchhhhhhhhcccchhh-hhhhhhhhhhhhhh---------hhheeeeEEecccch
Confidence 333444455665 9999999999999999999999999998 99999998887665 899999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCcce-eeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEE
Q 010324 278 MLASGSQDGKIKVWRIRSGQC-LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAI 356 (513)
Q Consensus 278 ~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 356 (513)
+|++|+.+..++|||++..+. ...+. +|.+.|..+.|....+.|++++.|++|++||.+++..++++. .+.+|+++.
T Consensus 114 ~lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlE 191 (334)
T KOG0278|consen 114 YLLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLE 191 (334)
T ss_pred hhhccchHHHhhhhhccCCCCCchhhc-CCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCccee
Confidence 999999999999999987654 44454 899999999999999999999999999999999999999987 567799999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEe
Q 010324 357 FTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSF 435 (513)
Q Consensus 357 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~ 435 (513)
++++|.++.++ ..+.|.+||..+...+..+..+ ..|.+...+|+. ..+++|+.|..++.||.. +..+..+
T Consensus 192 vs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-------~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 192 VSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-------CNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred eccCCCEEEEe-cCceeEEeccccccceeeccCc-------cccccccccCCC-ceEEecCcceEEEEEeccCCceeeec
Confidence 99999866555 4577999999999888887654 478888999988 899999999999999998 5555554
Q ss_pred ecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceee
Q 010324 436 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE 477 (513)
Q Consensus 436 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 477 (513)
...+.++|.++.|+|+|...++|++||+|++|....++..
T Consensus 263 --nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 263 --NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred --ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 2346788999999999999999999999999998776644
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.5e-30 Score=244.37 Aligned_cols=240 Identities=21% Similarity=0.375 Sum_probs=200.1
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCc---------------------------------------------
Q 010324 262 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG--------------------------------------------- 296 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~--------------------------------------------- 296 (513)
.|.+.|.+|.||+||+|||+||.||.|+||.+...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 59999999999999999999999999999987540
Q ss_pred ---------------ceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEcc-C
Q 010324 297 ---------------QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN-D 360 (513)
Q Consensus 297 ---------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~ 360 (513)
+++..+ .+|...|..+.|+.+ ++|++++.|.+|++|++...+++..|. |...|+|++|+| |
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhh-hccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 011122 478999999999965 589999999999999999999999887 999999999999 7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEE-eecC-
Q 010324 361 GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKS-FSSG- 438 (513)
Q Consensus 361 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~~- 438 (513)
.+++++|+-||.++||++...+...... ...-|+++++.|+| +..++|+.+|.+++|+..+..+.. ....
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~D-------l~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWND-------LRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehh-------hhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 8899999999999999998877655543 23589999999996 999999999999999998654332 2111
Q ss_pred ----ccCCCcEEEEEECCCC-CEEEEEecCceEEEEECCCceeeEeeecccC--CeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 439 ----KREGGDFVAACVSPKG-EWIYCVGEDRNLYCFSHQSGKLEHLMKVHEK--DVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 439 ----~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
...+..|+.+.+.|.. ..|++.+.|..|+|+|.++..++..++++.. .-....|+.||++|+++++|..|+||
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 1223479999997654 3588888999999999999999999987643 34567899999999999999999999
Q ss_pred c
Q 010324 512 K 512 (513)
Q Consensus 512 d 512 (513)
+
T Consensus 574 ~ 574 (712)
T KOG0283|consen 574 K 574 (712)
T ss_pred e
Confidence 7
No 77
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-29 Score=211.90 Aligned_cols=270 Identities=21% Similarity=0.278 Sum_probs=213.2
Q ss_pred EEEEEecCCeEEEEEeccccc----cccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeec
Q 010324 227 FLVSCSFDGFIEVVWDYLSGK----LKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 302 (513)
Q Consensus 227 ~la~g~~dg~i~~iwd~~~~~----~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 302 (513)
.+++|+....| +=+++.... -...+.+.+...+..|.++|++++.+ +.++|+|+.|-+|+|||+.+...+..+
T Consensus 3 ~iIvGtYE~~i-~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVI-LGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred eEEEeeeeeEE-EEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce
Confidence 36777777655 344443322 11223334455677899999999986 889999999999999999999888888
Q ss_pred ccccccCeEEEEEccCCC--EEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 010324 303 ERAHSEGVTSLVFSRDGS--QILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 380 (513)
Q Consensus 303 ~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 380 (513)
. .|.+.|+++.|.++-. .|++|+.||.|.+|+......+..+++|.+.|+.++.+|.|+..++.+.|+.++.||+-+
T Consensus 80 l-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 80 L-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred e-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 7 7999999999998765 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEE
Q 010324 381 TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCV 460 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 460 (513)
|+.-...... ...+.+.|+|.+ ..++++.. ..|-+|.+....+...... ...+.++.|- ++..+++|
T Consensus 159 Gr~a~v~~L~-------~~at~v~w~~~G-d~F~v~~~-~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG 225 (362)
T KOG0294|consen 159 GRVAFVLNLK-------NKATLVSWSPQG-DHFVVSGR-NKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVG 225 (362)
T ss_pred CccceeeccC-------CcceeeEEcCCC-CEEEEEec-cEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEe
Confidence 8866555432 233459999988 55555544 3577777763322222211 1234444443 56789999
Q ss_pred ecCceEEEEECCCceeeEeeecccCCeEEEEE--cCCCCEEEEEECCCeEEeccC
Q 010324 461 GEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTH--HPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 461 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~p~~~~l~s~~~dg~i~iWdp 513 (513)
++|+.|.+||..+..+...+.+|...|.++.+ +|++.+|+|+|.||.|+|||.
T Consensus 226 ~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 226 GDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred cCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 99999999999999999999999999999984 457789999999999999983
No 78
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-27 Score=192.66 Aligned_cols=295 Identities=20% Similarity=0.329 Sum_probs=232.6
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccc------cccccc-cccccccccccCCccEEEEEEcCCCCEEEEEe
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLS------GKLKKD-LQYQADETFMMHDETVLCIEFSRDSEMLASGS 283 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~------~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 283 (513)
.-...|.+++|+|.|.+.|+|+...+.+ |-.... +..... .+....+.-+.|.+.|.|.+|+|+|.++++|+
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~r-ic~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFR-ICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEE-EEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 5667899999999999999999999998 654321 111111 11111223456899999999999999999999
Q ss_pred CCCcEEEEEcCCccee-----eecccccccCeEEEEEccC----CCEEEEee-CCCcEEEEecCCCceeeEeccccccee
Q 010324 284 QDGKIKVWRIRSGQCL-----RRLERAHSEGVTSLVFSRD----GSQILSTS-FDSTARIHGLKSGKLLKEFRGHSSYVN 353 (513)
Q Consensus 284 ~dg~i~vwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~ 353 (513)
.|.+|++..+....+. ..+. .|.+.|..++|..+ +..|++++ .|..|++-|...|+....+.+|.+.|.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHIL 187 (350)
T ss_pred CCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEE
Confidence 9999999876543321 2333 68899999999753 45666654 467888889999999999999999998
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCC-CCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eE
Q 010324 354 DAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRG-GDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QV 431 (513)
Q Consensus 354 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~ 431 (513)
++ ++-+|-.+++|+.|.+|++||++-..++.++.....-.+ ..+.|.+++..|.+ .+++++..|....+||++| +.
T Consensus 188 al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCce
Confidence 76 344578999999999999999999888887764432222 24678999999988 9999999999999999995 55
Q ss_pred EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc----eeeEeeecccCCeEEEEEcCCCCEEEEEECCCe
Q 010324 432 VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG----KLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCT 507 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 507 (513)
+..+.. |...+.++.|+|...|+.+++.|..|++-|+... -++.....|...+..+.|+|..-.+++.+.|.+
T Consensus 266 iq~f~p---hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 266 IQRFHP---HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred eeeeCC---CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce
Confidence 555544 5677999999999999999999999999998642 233455568889999999999999999999999
Q ss_pred EEecc
Q 010324 508 MKLWK 512 (513)
Q Consensus 508 i~iWd 512 (513)
+.+|-
T Consensus 343 ~tlwa 347 (350)
T KOG0641|consen 343 ATLWA 347 (350)
T ss_pred EEEec
Confidence 99994
No 79
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=211.72 Aligned_cols=240 Identities=22% Similarity=0.346 Sum_probs=198.0
Q ss_pred CCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc
Q 010324 263 HDETVLCIEFSR-DSEMLASGSQDGKIKVWRIRS-GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK 340 (513)
Q Consensus 263 h~~~v~~l~~~~-~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 340 (513)
..+.|.+++||| ...+++.||.||+||+|+++. |..+.+....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~- 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG- 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-
Confidence 468899999999 555677899999999999986 56655555579999999999999999999999999999999998
Q ss_pred eeeEecccccceeEEEEccCCC--EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC
Q 010324 341 LLKEFRGHSSYVNDAIFTNDGS--RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK 418 (513)
Q Consensus 341 ~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 418 (513)
.+..+..|..+|.++.|-+... .|+||+.|++|+.||.+...++.++..+. .+.++..- ..+++++..
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-------RvYa~Dv~---~pm~vVata 174 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-------RVYAADVL---YPMAVVATA 174 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-------eeeehhcc---CceeEEEec
Confidence 5667778999999999987665 89999999999999999999888887654 44444432 268899999
Q ss_pred CCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc--eeeEeeecccC---------Ce
Q 010324 419 TSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG--KLEHLMKVHEK---------DV 487 (513)
Q Consensus 419 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~---------~v 487 (513)
+..|.+|++++.....-.....-...+.+++...+..-.+.|+-+|.+.+..+..+ +.-..++.|.. .|
T Consensus 175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 99999999975433322222233456788888888887899999999999999887 44566777763 48
Q ss_pred EEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 488 IGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 488 ~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
++++|+|....|+|+|.||++.+||.
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWDK 280 (347)
T ss_pred cceEeecccceEEEecCCceEEEecc
Confidence 89999999999999999999999983
No 80
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.4e-30 Score=208.79 Aligned_cols=253 Identities=17% Similarity=0.239 Sum_probs=208.4
Q ss_pred cceeeeeccccCceeEEEECCC-CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEE
Q 010324 203 TLSHTIKFGTKSHAECARFSPD-GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLA 280 (513)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~-g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~ 280 (513)
.......+...+.+..++|+++ .+.+++++.||+++ +||.... ..+...++.|...|.++.|++ ++..++
T Consensus 50 gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLr-l~d~~~~-------s~Pi~~~kEH~~EV~Svdwn~~~r~~~l 121 (311)
T KOG0277|consen 50 GIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLR-LFDLTMP-------SKPIHKFKEHKREVYSVDWNTVRRRIFL 121 (311)
T ss_pred CeEEEEeeecccceeEeeecCCCcceEEEEecCceEE-EeccCCC-------CcchhHHHhhhhheEEeccccccceeEE
Confidence 3333444577888999999994 56888999999998 9994332 234556777999999999999 667788
Q ss_pred EEeCCCcEEEEEcCCcceeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEcc
Q 010324 281 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 359 (513)
Q Consensus 281 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 359 (513)
+++.|++|++|+...+..+.++. +|...|...+|+| .++.+++++.|+++++||++.......+..|...+.++.|+.
T Consensus 122 tsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~k 200 (311)
T KOG0277|consen 122 TSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSK 200 (311)
T ss_pred eeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccc
Confidence 88999999999999999999997 8999999999999 678999999999999999987655555889999999999987
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeec
Q 010324 360 -DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSS 437 (513)
Q Consensus 360 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~ 437 (513)
+.+.++||+.|+.|++||+++.+ .+...+.+|...|..+.++|....++++++.|-++++||.. +........
T Consensus 201 y~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~ 275 (311)
T KOG0277|consen 201 YNHNVLATGGVDNLVRGWDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD 275 (311)
T ss_pred cCCcEEEecCCCceEEEEehhhcc-----ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh
Confidence 66789999999999999999765 22334468999999999999999999999999999999987 322222111
Q ss_pred CccCCCcEEEEEECC-CCCEEEEEecCceEEEEEC
Q 010324 438 GKREGGDFVAACVSP-KGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~ 471 (513)
.|...+..+.||+ ++.++|+.+.|+.++||+.
T Consensus 276 --~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 276 --HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred --ccceEEeccccccccCceeeecccccceeeecc
Confidence 2445566788876 5679999999999999984
No 81
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.9e-28 Score=235.08 Aligned_cols=247 Identities=17% Similarity=0.209 Sum_probs=186.4
Q ss_pred EecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCcc--------eeee
Q 010324 231 CSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-SEMLASGSQDGKIKVWRIRSGQ--------CLRR 301 (513)
Q Consensus 231 g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~vwd~~~~~--------~~~~ 301 (513)
|+.++.++ +|+..... +...+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++. ++..
T Consensus 50 GG~~gvI~-L~~~~r~~--------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~ 120 (568)
T PTZ00420 50 GGLIGAIR-LENQMRKP--------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120 (568)
T ss_pred CCceeEEE-eeecCCCc--------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE
Confidence 66788887 89876532 22356679999999999996 7899999999999999998643 2233
Q ss_pred cccccccCeEEEEEccCCCEE-EEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 010324 302 LERAHSEGVTSLVFSRDGSQI-LSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 380 (513)
Q Consensus 302 ~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 380 (513)
+. +|...|.+++|+|++..+ ++++.|++|++||+++++.+..+. +...|.+++|+|+|.+|++++.|+.|++||+++
T Consensus 121 L~-gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 121 LK-GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred ee-cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC
Confidence 43 789999999999988764 688999999999999998877775 557899999999999999999999999999999
Q ss_pred CceeEeecCCCCCCCCCceeeE-----EEecCCCCCeEEEEcCC----CcEEEEEcc--CeEEEEeecCccCCCcEEEEE
Q 010324 381 TDCLQTFKPPPPLRGGDASVNS-----VHLFPKNPDHIVVCNKT----SSIYIMTLQ--GQVVKSFSSGKREGGDFVAAC 449 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~l~~~~~~----~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~ 449 (513)
++.+.++. +|.+.+.+ ..+++++ .++++++.+ +.|++||++ +..+..... ....+.+....
T Consensus 199 g~~i~tl~------gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-d~~~~~L~p~~ 270 (568)
T PTZ00420 199 QEIASSFH------IHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-DNASAPLIPHY 270 (568)
T ss_pred CcEEEEEe------cccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-cCCccceEEee
Confidence 98887765 44444332 2334555 677776655 379999998 344433322 22233333444
Q ss_pred ECCCCCEEEEEecCceEEEEECCCceeeEeee-cccCCeEEEEEcCCC
Q 010324 450 VSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK-VHEKDVIGVTHHPHR 496 (513)
Q Consensus 450 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~p~~ 496 (513)
..++|.++++|+.|+.|++|++..+.....-. .+..++.+++|.|..
T Consensus 271 D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 271 DESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred eCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 46678999999999999999998774322111 255788899999964
No 82
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=9.4e-29 Score=229.55 Aligned_cols=280 Identities=24% Similarity=0.393 Sum_probs=237.4
Q ss_pred cceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEE-EEEcC-CCCEEE
Q 010324 203 TLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLC-IEFSR-DSEMLA 280 (513)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~-~~~~l~ 280 (513)
++.+.+. ||+..|..+++.+.. .++++|.||+++ +|+-..++... ...+.+|.+-|.+ +++.+ ++-.++
T Consensus 5 ~ls~~l~-gH~~DVr~v~~~~~~-~i~s~sRd~t~~-vw~~~~~~~l~------~~~~~~~~g~i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 5 KLSHELE-GHKSDVRAVAVTDGV-CIISGSRDGTVK-VWAKKGKQYLE------THAFEGPKGFIANSICYAESDKGRLV 75 (745)
T ss_pred eeEEEec-cCccchheeEecCCe-EEeecCCCCcee-eeeccCccccc------ceecccCcceeeccceeccccCcceE
Confidence 3455665 999999888877654 899999999998 99976655433 2345567787877 88876 555699
Q ss_pred EEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccC
Q 010324 281 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND 360 (513)
Q Consensus 281 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 360 (513)
+|+.|.+|.+|......+...+. +|.+.|.+++...++. +++||.|.++++|- .+++...+.+|...|.+++.-|+
T Consensus 76 ~g~~D~~i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e 151 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPE 151 (745)
T ss_pred eecccceEEEEecCCCCchhhhh-ccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCC
Confidence 99999999999999999999997 9999999999887776 99999999999996 46777789999999999999998
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCcc
Q 010324 361 GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKR 440 (513)
Q Consensus 361 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 440 (513)
+ .++||+.|.+|++|.- ++.++++. +|...|..+++.++ ..+++|+.||.|++|++.|..+.....
T Consensus 152 ~-~~vTgsaDKtIklWk~--~~~l~tf~------gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~~ge~l~~~~g--- 217 (745)
T KOG0301|consen 152 N-TYVTGSADKTIKLWKG--GTLLKTFS------GHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDLDGEVLLEMHG--- 217 (745)
T ss_pred C-cEEeccCcceeeeccC--Cchhhhhc------cchhheeeeEEecC--CCeEeecCCceEEEEeccCceeeeeec---
Confidence 7 8999999999999985 56666665 78999999999986 589999999999999999888877765
Q ss_pred CCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 441 EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 441 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
|...+.++...+++..++++++|++++||+.. ++.+.+.-....|+++.+-++|. +++|+.||.||||-
T Consensus 218 htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 218 HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 45668899988889999999999999999976 77777776667899999988877 56788899999984
No 83
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.5e-28 Score=205.63 Aligned_cols=292 Identities=23% Similarity=0.313 Sum_probs=219.1
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE-eCCCcEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG-SQDGKIK 289 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~i~ 289 (513)
||...|+|++|+.||++||+++.|++|+ +|++.+-.....-.... .. --+..+.++|+||-+-++.. -...+++
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir-~w~~~DF~~~eHr~~R~-nv---e~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIR-LWDVRDFENKEHRCIRQ-NV---EYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEE-EEecchhhhhhhhHhhc-cc---cCCCceEEEECCCcceEEEEEccCCEEE
Confidence 9999999999999999999999999997 99987633221100000 00 12356788999987755544 4556899
Q ss_pred EEEcCC---ccee--------eecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEc
Q 010324 290 VWRIRS---GQCL--------RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT 358 (513)
Q Consensus 290 vwd~~~---~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 358 (513)
+|.+.. |... ..+...|.-.+..+-...++.+|++++.|..|.+|+++ |+.+..+......-...+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 998643 2211 11233456667777777788999999999999999997 99998888777777888999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCc--eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-----CeE
Q 010324 359 NDGSRVVTASSDCTVKVWDLKSTD--CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-----GQV 431 (513)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-----~~~ 431 (513)
|+|+++++++..--+++|.+--++ ..+.......+.+|...|...+|+++. ..+++.+.||.+++||.+ ++.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEeeccceEecCCC
Confidence 999999999998889999864221 112222333456899999999999987 899999999999999986 222
Q ss_pred EEEeecC----ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEee-ecccCCeEEEEEcCCCCEEEEEECCC
Q 010324 432 VKSFSSG----KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM-KVHEKDVIGVTHHPHRNLLATYGEDC 506 (513)
Q Consensus 432 ~~~~~~~----~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~dg 506 (513)
.+.+..+ ...++....+..+|+|+.++... ...+.+|..++|+....+ ..|...|.+++|+++|++++|+| |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 2222221 22345566899999999887665 668999999998877655 46999999999999999999998 56
Q ss_pred eEEec
Q 010324 507 TMKLW 511 (513)
Q Consensus 507 ~i~iW 511 (513)
.+++.
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 67664
No 84
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=7.2e-28 Score=233.20 Aligned_cols=248 Identities=17% Similarity=0.223 Sum_probs=187.3
Q ss_pred ccccCcccceeeeeccccCceeEEEECCC-CCEEEEEecCCeEEEEEecccccc-ccccccccccccccCCccEEEEEEc
Q 010324 196 VEDMYPTTLSHTIKFGTKSHAECARFSPD-GQFLVSCSFDGFIEVVWDYLSGKL-KKDLQYQADETFMMHDETVLCIEFS 273 (513)
Q Consensus 196 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~la~g~~dg~i~~iwd~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~ 273 (513)
+++.........+. +|.+.|.+++|+|+ +.+||+|+.||+|+ +||+.++.. ...+ ..+...+.+|...|.+++|+
T Consensus 58 L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~lLASgS~DgtIr-IWDi~t~~~~~~~i-~~p~~~L~gH~~~V~sVaf~ 134 (568)
T PTZ00420 58 LENQMRKPPVIKLK-GHTSSILDLQFNPCFSEILASGSEDLTIR-VWEIPHNDESVKEI-KDPQCILKGHKKKISIIDWN 134 (568)
T ss_pred eeecCCCceEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCCCeEE-EEECCCCCcccccc-ccceEEeecCCCcEEEEEEC
Confidence 34433334455565 99999999999996 79999999999997 999976432 1111 12233567899999999999
Q ss_pred CCCCE-EEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccce
Q 010324 274 RDSEM-LASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV 352 (513)
Q Consensus 274 ~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 352 (513)
|++.. |++++.|++|++||+.+++....+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|.+.+
T Consensus 135 P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~ 212 (568)
T PTZ00420 135 PMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGK 212 (568)
T ss_pred CCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCc
Confidence 98875 5789999999999999998777664 56789999999999999999999999999999999999999998765
Q ss_pred eEE-----EEccCCCEEEEEeCCC----cEEEEeCCC-CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcE
Q 010324 353 NDA-----IFTNDGSRVVTASSDC----TVKVWDLKS-TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 422 (513)
Q Consensus 353 ~~~-----~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 422 (513)
.+. .|++++.++++++.|+ .|++||+++ ..++..+... ...+.+ ...+.++.+.++++|..|+.|
T Consensus 213 ~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld----~~~~~L-~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 213 NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID----NASAPL-IPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec----CCccce-EEeeeCCCCCEEEEEECCCeE
Confidence 433 3458889999988774 799999995 4455444311 111222 223445555889999999999
Q ss_pred EEEEccCeEEEEeecCccCCCcEEEEEECCCC
Q 010324 423 YIMTLQGQVVKSFSSGKREGGDFVAACVSPKG 454 (513)
Q Consensus 423 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 454 (513)
++|++....+..+.... ...+...++|.|..
T Consensus 288 r~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 288 RYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 99999855554444333 45667789999864
No 85
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=9.4e-28 Score=231.60 Aligned_cols=234 Identities=21% Similarity=0.325 Sum_probs=180.8
Q ss_pred ccccCceeEEEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCC-CEEEEEeCCCc
Q 010324 210 FGTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS-EMLASGSQDGK 287 (513)
Q Consensus 210 ~~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~ 287 (513)
.+|.+.|.+++|+| ++++||+|+.||+|+ +||+.++...... ..+...+.+|...|.+++|+|++ .+|++|+.|++
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk-IWdi~~~~~~~~~-~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIM-GWGIPEEGLTQNI-SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEE-EEecCCCcccccc-CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 39999999999999 899999999999997 9999875432111 12344677899999999999975 69999999999
Q ss_pred EEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccc-eeEEEEccCCCEEEE
Q 010324 288 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSY-VNDAIFTNDGSRVVT 366 (513)
Q Consensus 288 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~ 366 (513)
|++||+.+++.+..+. .|...|.+++|+|+|..|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++
T Consensus 150 VrIWDl~tg~~~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 150 VNVWDVERGKAVEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEECCCCeEEEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 9999999999888876 78999999999999999999999999999999999999888888764 456789998888877
Q ss_pred Ee----CCCcEEEEeCCCCce-eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc-CCCcEEEEEccCeEEEEeecCcc
Q 010324 367 AS----SDCTVKVWDLKSTDC-LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN-KTSSIYIMTLQGQVVKSFSSGKR 440 (513)
Q Consensus 367 ~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~ 440 (513)
++ .|+.|++||+++... ...... .....+....|++++ ..+++++ .|+.|++||+........... .
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~-----d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~ 301 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDL-----DQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNERLTFCSSY-S 301 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEecc-----CCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCceEEEeec-c
Confidence 65 478999999987542 222211 122344455677776 6666665 699999999984433222211 1
Q ss_pred CCCcEEEEEECCC
Q 010324 441 EGGDFVAACVSPK 453 (513)
Q Consensus 441 ~~~~~~~~~~s~~ 453 (513)
...+...+++.|.
T Consensus 302 s~~~~~g~~~~pk 314 (493)
T PTZ00421 302 SVEPHKGLCMMPK 314 (493)
T ss_pred CCCCCcceEeccc
Confidence 2334567777775
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1e-28 Score=203.29 Aligned_cols=242 Identities=19% Similarity=0.269 Sum_probs=205.7
Q ss_pred cccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecc-cccccCeEEEEEcc-CCCEEEEeeCCCcEEEEe
Q 010324 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE-RAHSEGVTSLVFSR-DGSQILSTSFDSTARIHG 335 (513)
Q Consensus 258 ~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d 335 (513)
..+.+|...|.+++|+.+|..|++|+.|+++.+|+++..+...... .+|.+.|-.++|+| ....+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 3556799999999999999999999999999999998775443332 47888899999998 567899999999999999
Q ss_pred cCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE
Q 010324 336 LKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV 415 (513)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 415 (513)
++.+++........+.+ -+.|+|+|.++++++.|..|.+.|.++.+.....+. ...++.++|+-+ +++++.
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-------~~e~ne~~w~~~-nd~Ffl 164 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-------KFEVNEISWNNS-NDLFFL 164 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-------cceeeeeeecCC-CCEEEE
Confidence 99999998887555444 478999999999999999999999998877666543 346788899844 488888
Q ss_pred EcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCC
Q 010324 416 CNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 495 (513)
Q Consensus 416 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~ 495 (513)
.+..|.|.|.... .++.......|.....++.|+|+|+++|+|+.|..+.+||+..--+++.+..+.-+|..+.|+.+
T Consensus 165 t~GlG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 165 TNGLGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD 242 (313)
T ss_pred ecCCceEEEEecc--ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence 8889999999887 23333333445677889999999999999999999999999999899999999999999999999
Q ss_pred CCEEEEEECCCeEEe
Q 010324 496 RNLLATYGEDCTMKL 510 (513)
Q Consensus 496 ~~~l~s~~~dg~i~i 510 (513)
|++||+||.|..|-|
T Consensus 243 g~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 243 GRMLASASEDHFIDI 257 (313)
T ss_pred cceeeccCccceEEe
Confidence 999999999988754
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-28 Score=227.33 Aligned_cols=259 Identities=21% Similarity=0.285 Sum_probs=216.1
Q ss_pred ccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC
Q 010324 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD 275 (513)
Q Consensus 196 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 275 (513)
.|+...........++ ...|+++.|+++|.+||+|..+|.|. |||..+.+....+.. +|...|.+++|.
T Consensus 201 lW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~-iwD~~~~k~~~~~~~-------~h~~rvg~laW~-- 269 (484)
T KOG0305|consen 201 LWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQ-IWDVKEQKKTRTLRG-------SHASRVGSLAWN-- 269 (484)
T ss_pred EEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEE-EEehhhccccccccC-------CcCceeEEEecc--
Confidence 4555555555555544 88999999999999999999999996 999988766554332 189999999998
Q ss_pred CCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEE
Q 010324 276 SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDA 355 (513)
Q Consensus 276 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 355 (513)
+..+.+|+.|+.|..+|++..+.......+|...|..+.|++|+.++++|+.|+.+.|||.....+...+..|...|..+
T Consensus 270 ~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~ 349 (484)
T KOG0305|consen 270 SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL 349 (484)
T ss_pred CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence 66899999999999999998876666344899999999999999999999999999999998889999999999999999
Q ss_pred EEcc-CCCEEEEEe--CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE-EcCCCcEEEEEccCeE
Q 010324 356 IFTN-DGSRVVTAS--SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV-CNKTSSIYIMTLQGQV 431 (513)
Q Consensus 356 ~~~~-~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~~~~i~i~d~~~~~ 431 (513)
+|+| ....||+|+ .|+.|++||..++..+..+. ....|.++.|++....++.+ |..++.|.+|+.....
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~ 422 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK 422 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc
Confidence 9999 566888875 59999999999998887764 45689999999988555544 3456789999998532
Q ss_pred EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc
Q 010324 432 VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 474 (513)
.......|...|..++++|||..+++|+.|.++++|++-..
T Consensus 423 --~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 423 --LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred --eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 22233345677999999999999999999999999998764
No 88
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=5.2e-29 Score=220.75 Aligned_cols=275 Identities=21% Similarity=0.317 Sum_probs=214.5
Q ss_pred cceeeeeccccCceeEEEECCC-CCEEEEEecCCeEEEEEecccccccccc--ccccccccccCCccEEEEEEcC-CCCE
Q 010324 203 TLSHTIKFGTKSHAECARFSPD-GQFLVSCSFDGFIEVVWDYLSGKLKKDL--QYQADETFMMHDETVLCIEFSR-DSEM 278 (513)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~-g~~la~g~~dg~i~~iwd~~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~~-~~~~ 278 (513)
......++.|.+.|+.+.+-|. ...+|+++..+.+ +|||..+..-.... .+.+...+.||...-.+++|++ ..-.
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv-~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~ 192 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDV-YVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGT 192 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCE-EEEEeccCCCcccccccCCCceEEEeeccccccccccccccee
Confidence 3344556689999999999995 5677788889999 59998764433322 4556678899999889999999 4457
Q ss_pred EEEEeCCCcEEEEEcCCcce------eeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecC--CCceeeEecccc
Q 010324 279 LASGSQDGKIKVWRIRSGQC------LRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLK--SGKLLKEFRGHS 349 (513)
Q Consensus 279 l~s~~~dg~i~vwd~~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~ 349 (513)
|++|+.|+.|++||+..... ......+|...|..++|++ +...|++++.|+.+.|||++ +.+......+|.
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~ 272 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS 272 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC
Confidence 99999999999999975432 2233348999999999999 56678899999999999999 556667778899
Q ss_pred cceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc
Q 010324 350 SYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 428 (513)
Q Consensus 350 ~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~ 428 (513)
+.|+|++|+| ++..||+|+.|++|.+||+|+... +...+.+|...|..+.|+|.....+++++.|+.+.+||+.
T Consensus 273 ~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred CceeEEEeCCCCCceEEeccCCCcEEEeechhccc-----CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 9999999999 566889999999999999998653 3333458999999999999999999999999999999987
Q ss_pred CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCC-EEEEEECCCe
Q 010324 429 GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN-LLATYGEDCT 507 (513)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~ 507 (513)
.-.-... ++. ..|| ..+++..-.||...|..+.|+|+.+ .|+|++.|+.
T Consensus 348 ~ig~eq~----------------~ed------a~dg--------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~ 397 (422)
T KOG0264|consen 348 RIGEEQS----------------PED------AEDG--------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI 397 (422)
T ss_pred ccccccC----------------hhh------hccC--------CcceeEEecCcccccccccCCCCCCeEEEEecCCce
Confidence 2110000 000 0011 1244556678999999999999765 6788899999
Q ss_pred EEeccC
Q 010324 508 MKLWKP 513 (513)
Q Consensus 508 i~iWdp 513 (513)
+.||+|
T Consensus 398 LqIW~~ 403 (422)
T KOG0264|consen 398 LQIWQM 403 (422)
T ss_pred EEEeec
Confidence 999986
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.6e-28 Score=235.53 Aligned_cols=262 Identities=27% Similarity=0.467 Sum_probs=222.1
Q ss_pred ccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEc
Q 010324 194 QDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS 273 (513)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 273 (513)
...|+..+......-..||.+.|++++|...+.+|++|+.|.+++ +||..+|.... .+.+|.+.|.++...
T Consensus 230 l~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~r-vWd~~sg~C~~--------~l~gh~stv~~~~~~ 300 (537)
T KOG0274|consen 230 LHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTER-VWDCSTGECTH--------SLQGHTSSVRCLTID 300 (537)
T ss_pred eEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEE-eEecCCCcEEE--------EecCCCceEEEEEcc
Confidence 356777777777773349999999999998899999999999998 99999988765 445699999999876
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccccccee
Q 010324 274 RDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVN 353 (513)
Q Consensus 274 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 353 (513)
+ ..+++|+.|.+|++|++.++..+..+. +|..+|.++..+ +.++++|+.||+|++||+.+++++..+.+|...|.
T Consensus 301 ~--~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 301 P--FLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY 375 (537)
T ss_pred C--ceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEE
Confidence 4 478889999999999999999999987 699999999997 88999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeE
Q 010324 354 DAIFTNDGSRVVTASSDCTVKVWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQV 431 (513)
Q Consensus 354 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~ 431 (513)
++.+.+. +.+++|+.|++|++||+++. +++.++. +|...+..+.+.. +.+++++.|+.|++||.. ++.
T Consensus 376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~------~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ------GHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred EEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc------CCccccccccccc---ceeEeccccccEEEeecccCce
Confidence 9988765 89999999999999999999 7877776 4555565555433 899999999999999998 555
Q ss_pred EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc
Q 010324 432 VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH 483 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 483 (513)
.+.+... +...+..+++. ...+++++.||.+.+||++++++...+-.+
T Consensus 446 ~~~~~~~--~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 446 LRTLEGR--HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred eeeeccC--CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 5555543 34557777665 567899999999999999999988766433
No 90
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=4.2e-28 Score=203.02 Aligned_cols=297 Identities=18% Similarity=0.255 Sum_probs=232.4
Q ss_pred cccCceeEEEECC-CCCEEEEEecCCeEEEEEecccccccc--cc-----ccccccccccCCccEEEEEEcC-CCCEEEE
Q 010324 211 GTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKK--DL-----QYQADETFMMHDETVLCIEFSR-DSEMLAS 281 (513)
Q Consensus 211 ~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~--~~-----~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s 281 (513)
.|.+.|+++...+ .|+|+++|+.||.|. +||++...... .+ ..-....-.+|.-.|.++.|-| |...+.+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~-v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIA-VFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEE-EEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 7889999999998 799999999999995 99997644111 11 0011223356889999999999 7778999
Q ss_pred EeCCCcEEEEEcCCcceeeecccccccCeEEEEEccC---CCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEc
Q 010324 282 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD---GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT 358 (513)
Q Consensus 282 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 358 (513)
++.|.+++|||..+-+....|. ..+.|.+-+++|- ...+++|..|-.|++.|+.+|...+.+.+|.+.|.++.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 9999999999999988888775 6788999999983 3467888889999999999999999999999999999999
Q ss_pred cCCCE-EEEEeCCCcEEEEeCCCC-ceeEeecCC--------CCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc
Q 010324 359 NDGSR-VVTASSDCTVKVWDLKST-DCLQTFKPP--------PPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 428 (513)
Q Consensus 359 ~~~~~-l~~~~~dg~i~iwd~~~~-~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~ 428 (513)
|...+ |++|+.||.|++||++.- .+...+... ....+|.+.++.++|..++ .++++++.|..+++|+..
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNME 276 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecc
Confidence 97764 678999999999999865 333333211 1234788999999999988 889999999999999987
Q ss_pred -Ce-EEEEeecC---ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEE
Q 010324 429 -GQ-VVKSFSSG---KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 429 -~~-~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 503 (513)
|. .++.+-.. ......+. +. +.+...++.--.++.+.++++-++..+..+.+|-..|.+.++-|+-+...+|+
T Consensus 277 ~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~ 354 (397)
T KOG4283|consen 277 SGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGD 354 (397)
T ss_pred cCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccc
Confidence 32 22222111 11111111 22 33333444444569999999999999999999999999999999989999999
Q ss_pred CCCeEEeccC
Q 010324 504 EDCTMKLWKP 513 (513)
Q Consensus 504 ~dg~i~iWdp 513 (513)
.|+.|..|-|
T Consensus 355 ~d~ni~~w~p 364 (397)
T KOG4283|consen 355 MNGNIYMWSP 364 (397)
T ss_pred cCCccccccc
Confidence 9999999976
No 91
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=3.7e-28 Score=200.62 Aligned_cols=264 Identities=22% Similarity=0.294 Sum_probs=211.8
Q ss_pred ccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEE
Q 010324 190 AAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLC 269 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~ 269 (513)
......+|-.......-+.. ||.+.|+|+..+-+.+++++|+.|.+++ +||+.+|+.+..+. ...+|..
T Consensus 30 KD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~~liTGSAD~t~k-LWDv~tGk~la~~k---------~~~~Vk~ 98 (327)
T KOG0643|consen 30 KDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHLITGSADQTAK-LWDVETGKQLATWK---------TNSPVKR 98 (327)
T ss_pred CCCCceEEEecCCceeeeec-CCCceEEEEEecCCcceeeeccccceeE-EEEcCCCcEEEEee---------cCCeeEE
Confidence 33445566666667777777 9999999999999999999999999997 99999999887766 5789999
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEEcC-------CcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecC
Q 010324 270 IEFSRDSEMLASGSQ-----DGKIKVWRIR-------SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 337 (513)
Q Consensus 270 l~~~~~~~~l~s~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 337 (513)
+.|+++|++++.+.. .+.|.++|++ ..++...+. .+.+.++.+-|.|-+.+|++|..||.|..||++
T Consensus 99 ~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~ 177 (327)
T KOG0643|consen 99 VDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGPLGETIIAGHEDGSISIYDAR 177 (327)
T ss_pred EeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeecccCCEEEEecCCCcEEEEEcc
Confidence 999999998887753 4689999997 345566665 677899999999999999999999999999999
Q ss_pred CCc-eeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE
Q 010324 338 SGK-LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 338 ~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 416 (513)
+|+ .+...+.|...|+++.+++|..++++++.|.+-++||.++.+++.++.. +.++++.+++|.....++.|
T Consensus 178 ~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-------e~PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 178 TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-------ERPVNTAAISPLLDHVILGG 250 (327)
T ss_pred cCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-------cccccceecccccceEEecC
Confidence 985 4556678999999999999999999999999999999999999999864 45899999999874444444
Q ss_pred cCCCcEEEEEcc---CeEEE---------EeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 417 NKTSSIYIMTLQ---GQVVK---------SFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 417 ~~~~~i~i~d~~---~~~~~---------~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
+.+ ..-+-... ++-.. .+-....|-+++++++|+|+|+..++|++||.|++.....
T Consensus 251 Gqe-A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 251 GQE-AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred Cce-eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 433 22222111 11111 1112245678899999999999999999999999986543
No 92
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-27 Score=228.91 Aligned_cols=287 Identities=19% Similarity=0.272 Sum_probs=233.2
Q ss_pred eeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccc-cccccccccccccccCCccEEEEEEcCCCCEEEEEeCCC
Q 010324 208 IKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGK-LKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG 286 (513)
Q Consensus 208 ~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 286 (513)
.++.|+..-+.++|.|+|.+|.+++.||.|+ +|+..... .... +..+...|.+++-. +.+|++|+.++
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir-~~~~~sd~e~P~t--------i~~~g~~v~~ia~~--s~~f~~~s~~~ 76 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIR-KWKTNSDEEEPET--------IDISGELVSSIACY--SNHFLTGSEQN 76 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceE-EeecCCcccCCch--------hhccCceeEEEeec--ccceEEeeccc
Confidence 3458888999999999999999999999998 99977652 2221 12267788888765 55899999999
Q ss_pred cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEE
Q 010324 287 KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVT 366 (513)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 366 (513)
+|.+|.+.+++.-..+. ...-++++++|+-+|++++.|+.|-.|++.++.+......+++|.++|.++.|+|++++|++
T Consensus 77 tv~~y~fps~~~~~iL~-Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAv 155 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTILA-RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAV 155 (933)
T ss_pred eEEEeeCCCCCccceee-eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEE
Confidence 99999999887654444 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeEeecCCCCCCCC--CceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCc
Q 010324 367 ASSDCTVKVWDLKSTDCLQTFKPPPPLRGG--DASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGD 444 (513)
Q Consensus 367 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 444 (513)
.+.||.|++||+.++....++......... ...+..++|+|++ ..+++...++.|.+|+..+...........+...
T Consensus 156 ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 156 SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred EecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheeecccccccc
Confidence 999999999999999887777654433222 4567788999998 6777778899999999986554444444434455
Q ss_pred EEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 445 FVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 445 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
+..+.|+|+|+|||+++.||.|.|||..+-.. .-....|.+++|.|+.+-+-.-...|+..+|
T Consensus 235 ~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred eEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 89999999999999999999999999987221 2234679999999998876655555555444
No 93
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.4e-28 Score=240.20 Aligned_cols=255 Identities=21% Similarity=0.324 Sum_probs=208.0
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccc----------cccccccccccccccccCCccEEEEEEcCCCCEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLS----------GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~----------~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 280 (513)
.|.+.|+|+.|+|||++||+|+.|+.| .||+... |.....-.+.....+.+|...|.+++|+|++.+|+
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v-~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDDRLV-MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV 145 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCcceE-EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence 899999999999999999999999999 5999873 11222223445667889999999999999999999
Q ss_pred EEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccc------ccceeE
Q 010324 281 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH------SSYVND 354 (513)
Q Consensus 281 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~ 354 (513)
+++.|++|.+||..+.+.+..+. +|.+.|..+.|.|-|++|++-+.|++|++|++.+....+.+..+ ...+..
T Consensus 146 S~s~DnsViiwn~~tF~~~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTFELLKVLR-GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred EecccceEEEEccccceeeeeee-cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeee
Confidence 99999999999999998888887 99999999999999999999999999999998776666666543 345788
Q ss_pred EEEccCCCEEEEEeC----CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC----C--------CC----eEE
Q 010324 355 AIFTNDGSRVVTASS----DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK----N--------PD----HIV 414 (513)
Q Consensus 355 ~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~--------~~----~l~ 414 (513)
+.|+|||.+|++... -..+.|.+-.+.+.-..+ .+|..++..+.|+|. . ++ .++
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~L------vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A 298 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL------VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA 298 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCCceeeeee------ecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence 999999999998643 345777776555544444 488999999999883 1 11 788
Q ss_pred EEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc
Q 010324 415 VCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 415 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 474 (513)
+|+.|+.|.+|... .....+..+.-....|..++|+|||..|++++.||+|.++.....
T Consensus 299 vgSqDrSlSVW~T~-~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 299 VGSQDRSLSVWNTA-LPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EecCCccEEEEecC-CCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 99999999999984 222222223334567999999999999999999999999998754
No 94
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.5e-28 Score=213.30 Aligned_cols=252 Identities=19% Similarity=0.317 Sum_probs=206.5
Q ss_pred ceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEe
Q 010324 204 LSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS 283 (513)
Q Consensus 204 ~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 283 (513)
+.+++. ||..+|..+.||||.++|++|+.|..++ +||..+|.....+.. +|...+.+++|.|||..+++|+
T Consensus 261 l~~tlv-gh~~~V~yi~wSPDdryLlaCg~~e~~~-lwDv~tgd~~~~y~~-------~~~~S~~sc~W~pDg~~~V~Gs 331 (519)
T KOG0293|consen 261 LKKTLV-GHSQPVSYIMWSPDDRYLLACGFDEVLS-LWDVDTGDLRHLYPS-------GLGFSVSSCAWCPDGFRFVTGS 331 (519)
T ss_pred eeeeee-cccCceEEEEECCCCCeEEecCchHhee-eccCCcchhhhhccc-------CcCCCcceeEEccCCceeEecC
Confidence 366665 9999999999999999999999999996 999999988765542 2568999999999999999999
Q ss_pred CCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCE
Q 010324 284 QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSR 363 (513)
Q Consensus 284 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 363 (513)
.|+++..||+. |.............|.+++.++||+++++.+.|..|++++..+......+. ...+|+++..+.++++
T Consensus 332 ~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~ 409 (519)
T KOG0293|consen 332 PDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKL 409 (519)
T ss_pred CCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcE
Confidence 99999999976 444555554455679999999999999999999999999987765554444 4567999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCC
Q 010324 364 VVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREG 442 (513)
Q Consensus 364 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~ 442 (513)
+++.-.+..+++||+.....+..+.... ...-+-.-+|-..+..++++|+.|+.|++|+.. ++.+..+.. |.
T Consensus 410 ~LvnL~~qei~LWDl~e~~lv~kY~Ghk----q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG---Hs 482 (519)
T KOG0293|consen 410 ALVNLQDQEIHLWDLEENKLVRKYFGHK----QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG---HS 482 (519)
T ss_pred EEEEcccCeeEEeecchhhHHHHhhccc----ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC---Cc
Confidence 9999999999999999777666665332 122344455666666899999999999999997 667766665 44
Q ss_pred CcEEEEEECCCC-CEEEEEecCceEEEEECCC
Q 010324 443 GDFVAACVSPKG-EWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 443 ~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~ 473 (513)
..+.+++|+|.. ..+|+++.||+|+||-...
T Consensus 483 ~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 483 KTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 679999999965 5678999999999998653
No 95
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=211.70 Aligned_cols=286 Identities=13% Similarity=0.212 Sum_probs=231.8
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQDGKIKVW 291 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~vw 291 (513)
.+.|+|+.|+|....|.+|+.||.++ ||.++...-. .+ +.+.--..+|.+.+|.|+|. .+++++.....+.|
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lr-ifqvDGk~N~-~l-----qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLR-IFQVDGKVNP-KL-----QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEE-EEEecCccCh-hh-----eeeeeccCccceeeecCCCceEEEecccceEEEEe
Confidence 46799999999999999999999998 9988643321 11 12222567999999999999 89999999999999
Q ss_pred EcCCcceeee--cccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC
Q 010324 292 RIRSGQCLRR--LERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS 369 (513)
Q Consensus 292 d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 369 (513)
|+.+.+..+. ........+.....+|++++|+..+..|.|.+....+++.+..++ -.+.|.+++|+.+++.|++++.
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred eccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcC
Confidence 9998775332 221123457788899999999999999999999999999998887 5677999999999999999999
Q ss_pred CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC----eEEEEeecCccCCCcE
Q 010324 370 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG----QVVKSFSSGKREGGDF 445 (513)
Q Consensus 370 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~~~~ 445 (513)
+|.|.+||++...+++.+..... -.-++++.++++ .++++|+..|.|.|||.+. ...+.+.....-...|
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~-----v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGS-----VHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred CceEEEEecCCcceEEEEeecCc-----cceeeeeecCCC-ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheee
Confidence 99999999999999988874432 234567777776 7999999999999999752 2223333333345678
Q ss_pred EEEEECCCCCEEEEEe--cCceEEEEECCCceeeEeeeccc---CCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 446 VAACVSPKGEWIYCVG--EDRNLYCFSHQSGKLEHLMKVHE---KDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 446 ~~~~~s~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+++.|+++++.|+.++ .+..+++-++.+......++... +.|+|++|+|.+.+||.|..+|+|.+|+
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 9999999999999888 57789999998887777776543 4689999999999999999999999997
No 96
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.9e-28 Score=210.09 Aligned_cols=241 Identities=24% Similarity=0.390 Sum_probs=200.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCC---EEEEeeCCCcEEEEecCCC
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS---QILSTSFDSTARIHGLKSG 339 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~ 339 (513)
|.+.|.++.-. ++++++|++||.+++|| ..|+....+. +|.++|.+++|.-... .|++++.|.++++|-++.+
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 88999998887 77999999999999999 5688888887 9999999999865333 5999999999999998877
Q ss_pred ce----eeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCc--ee-----------------EeecCCCCCCCC
Q 010324 340 KL----LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD--CL-----------------QTFKPPPPLRGG 396 (513)
Q Consensus 340 ~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~-----------------~~~~~~~~~~~~ 396 (513)
+. +...++|...|.++...++|..+++|+.|.+|.+|+..+.. .. .+-.+...+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 53 33445899999999999999999999999999999932211 00 011112234589
Q ss_pred CceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce
Q 010324 397 DASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK 475 (513)
Q Consensus 397 ~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 475 (513)
..+|.++.|.+ ...+++++.|.+|+.||+. ++....+.. +..+.++..+|..++|++|+.|..+++||.+++.
T Consensus 260 t~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~----~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 260 TEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTT----NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred ccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeec----CcceeEeecccccceeeecCCCCceeecCCCCCC
Confidence 99999999998 4899999999999999998 555555544 3458899999999999999999999999998763
Q ss_pred ---eeEeeecccCCeEEEEEcC-CCCEEEEEECCCeEEeccC
Q 010324 476 ---LEHLMKVHEKDVIGVTHHP-HRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 476 ---~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iWdp 513 (513)
....+.+|.+.|.++.|+| +..+|++|+.||++++||.
T Consensus 334 gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 334 GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 4578889999999999999 5578999999999999984
No 97
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-28 Score=199.66 Aligned_cols=258 Identities=22% Similarity=0.295 Sum_probs=206.2
Q ss_pred eeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC--CCCEEEEE
Q 010324 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASG 282 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~ 282 (513)
.++|...|.+-|..+...--|+.|||++.|++|+ |+........ ....++.||.++|..++|.. -|.+||++
T Consensus 3 ~q~idt~H~D~IHda~lDyygkrlATcsSD~tVk-If~v~~n~~s-----~ll~~L~Gh~GPVwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 3 MQTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVK-IFEVRNNGQS-----KLLAELTGHSGPVWKVAWAHPKFGTILASC 76 (299)
T ss_pred ceehhhhhhhhhhHhhhhhhcceeeeecCCccEE-EEEEcCCCCc-----eeeeEecCCCCCeeEEeecccccCcEeeEe
Confidence 3566678999999999988999999999999998 9988765431 23457889999999999987 89999999
Q ss_pred eCCCcEEEEEcCCcceeeecc-cccccCeEEEEEccC--CCEEEEeeCCCcEEEEecCCC---ceeeEecccccceeEEE
Q 010324 283 SQDGKIKVWRIRSGQCLRRLE-RAHSEGVTSLVFSRD--GSQILSTSFDSTARIHGLKSG---KLLKEFRGHSSYVNDAI 356 (513)
Q Consensus 283 ~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~ 356 (513)
+.||.|.||.-..|+-.+... ..|...|++++|.|. |-.|++++.||.|.+.+.++. ........|.-.|++++
T Consensus 77 sYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 77 SYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred ecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 999999999988775332221 268899999999994 668899999999999988654 12234467899999999
Q ss_pred EccC---C-----------CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC---CCeEEEEcCC
Q 010324 357 FTND---G-----------SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN---PDHIVVCNKT 419 (513)
Q Consensus 357 ~~~~---~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~ 419 (513)
|.|. | +.|++|+.|..|+||+..+++ +.....+.+|...|..++|.|.. ...+++++.|
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcc----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence 9985 4 579999999999999998862 33334466899999999999964 4679999999
Q ss_pred CcEEEEEccCe-EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 420 SSIYIMTLQGQ-VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 420 ~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
|++.+|..+.. ..............+..+.||..|+.|++++.|+.|.+|.-.
T Consensus 233 g~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 99999998722 111111122234568899999999999999999999999754
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.8e-28 Score=206.07 Aligned_cols=281 Identities=22% Similarity=0.314 Sum_probs=237.1
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
||++.|+.++.......+.+++.|.+.+ ||.+++|.... ++.||.+.|+++.|++.+.++++++.|++..|
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~-iWs~Esg~CL~--------~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTAR-IWSLESGACLA--------TYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred ccccceeeehhhcCCcceeeccccccee-EEeecccccee--------eecccccceeeEEeccccceEEEccCCcchHH
Confidence 9999999999998888999999999996 99999998765 44579999999999999999999999999999
Q ss_pred EEc------CC--------c--------------------------ceeeecccccccCeEEEEEccCCCEEEEeeCCCc
Q 010324 291 WRI------RS--------G--------------------------QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDST 330 (513)
Q Consensus 291 wd~------~~--------~--------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 330 (513)
|.. .. + .++..+. +|...|.++.|...|+.+++++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee-ccccceEehhhhcCcceeeeeecccc
Confidence 972 11 0 0123333 78889999999999999999999999
Q ss_pred EEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCC
Q 010324 331 ARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP 410 (513)
Q Consensus 331 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 410 (513)
-.+||+++|+.+..+.+|....+.++-+|..+++++++.|-+.++||++.. + .....+++|...|+++.|..+
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I---~sV~VFQGHtdtVTS~vF~~d-- 368 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--I---QSVAVFQGHTDTVTSVVFNTD-- 368 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh--c---ceeeeecccccceeEEEEecC--
Confidence 999999999999999999999999999999999999999999999999832 2 222234589999999999876
Q ss_pred CeEEEEcCCCcEEEEEccC--eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceee----Eeeeccc
Q 010324 411 DHIVVCNKTSSIYIMTLQG--QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE----HLMKVHE 484 (513)
Q Consensus 411 ~~l~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~----~~~~~h~ 484 (513)
..+++++.|.+|++||+++ ..+..+.. ..++..++++..+..|+.-..+..|++||+...++- ..-++|.
T Consensus 369 d~vVSgSDDrTvKvWdLrNMRsplATIRt----dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHr 444 (481)
T KOG0300|consen 369 DRVVSGSDDRTVKVWDLRNMRSPLATIRT----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHR 444 (481)
T ss_pred CceeecCCCceEEEeeeccccCcceeeec----CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccc
Confidence 6899999999999999984 34444443 456888999998999999999999999998754432 2345899
Q ss_pred CCeEEEEEcCCC--CEEEEEECCCeEEecc
Q 010324 485 KDVIGVTHHPHR--NLLATYGEDCTMKLWK 512 (513)
Q Consensus 485 ~~v~~~~~~p~~--~~l~s~~~dg~i~iWd 512 (513)
.-|.|++|..+. .-|++||.|..+.=|+
T Consensus 445 RMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 445 RMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred eeeeeeeccccCcccccccccccceeeeeE
Confidence 999999998654 4578999999998886
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=210.28 Aligned_cols=259 Identities=22% Similarity=0.291 Sum_probs=219.6
Q ss_pred cccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCC
Q 010324 197 EDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS 276 (513)
Q Consensus 197 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 276 (513)
.+....+....++ ||.-.|+.+.|+|+...+++++.|..|+ +|......... ....|..+|+.+..+|.|
T Consensus 246 ~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~-vws~~~~s~~~--------~~~~h~~~V~~ls~h~tg 315 (506)
T KOG0289|consen 246 FDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIR-VWSVPLSSEPT--------SSRPHEEPVTGLSLHPTG 315 (506)
T ss_pred Eecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEE-eeccccccCcc--------ccccccccceeeeeccCC
Confidence 3444455566666 9999999999999999999999999997 99987655332 233499999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCcceeeecccc-cccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEE
Q 010324 277 EMLASGSQDGKIKVWRIRSGQCLRRLERA-HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDA 355 (513)
Q Consensus 277 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 355 (513)
.||++++.||+..+.|+++|..+...... ..-.+++.+|+|||..|.+|+.||.|++||+.++..+..|.+|.++|..+
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAI 395 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEE
Confidence 99999999999999999999988777521 23468999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEe
Q 010324 356 IFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSF 435 (513)
Q Consensus 356 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 435 (513)
+|+.+|-+|++++.|+.|++||+|..+...++.... ...+.++.|.+.+ .+++.++.+-.|++++-..+.....
T Consensus 396 ~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~-----~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 396 SFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE-----KKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred EeccCceEEEEEecCCeEEEEEehhhcccceeeccc-----cccceeEEEcCCC-CeEEeecceeEEEEEecccccceee
Confidence 999999999999999999999999888777776432 3478999999888 8888888888888888665555555
Q ss_pred ecCccCCCcEEEEEECCCCCEEEEEecCceEEEEEC
Q 010324 436 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 436 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 471 (513)
.....+.+..+.+.|....+++++++.|..++++.+
T Consensus 470 ~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 555555667888999999999999999999888754
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=9.3e-28 Score=223.40 Aligned_cols=298 Identities=21% Similarity=0.306 Sum_probs=242.4
Q ss_pred cccCceeEEEECCC-----------CCEEEEEecCCeEEEEEecccccccccc------------ccc------------
Q 010324 211 GTKSHAECARFSPD-----------GQFLVSCSFDGFIEVVWDYLSGKLKKDL------------QYQ------------ 255 (513)
Q Consensus 211 ~h~~~v~~~~~s~~-----------g~~la~g~~dg~i~~iwd~~~~~~~~~~------------~~~------------ 255 (513)
-|...|+.+.--|. ...+.|++.|++|| +|++..+.-...+ .+.
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR-lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~ 445 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR-LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA 445 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEE-EeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence 78888888776551 23589999999999 9998763211110 000
Q ss_pred -----cccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEcc---CCCEEEEeeC
Q 010324 256 -----ADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR---DGSQILSTSF 327 (513)
Q Consensus 256 -----~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~ 327 (513)
......+....+.+++.+|+|++||+|..-|.++||++..-+....+. .|...|.|+.|+. ..++|++++.
T Consensus 446 ~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e-AHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 446 GIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME-AHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred CcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee-cccceeEEEeecCchhhhHhhhhccC
Confidence 001122345679999999999999999999999999999888887777 8999999999985 3568999999
Q ss_pred CCcEEEEecCC-CceeeEecccccceeEEEEccCC--CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEE
Q 010324 328 DSTARIHGLKS-GKLLKEFRGHSSYVNDAIFTNDG--SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVH 404 (513)
Q Consensus 328 dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (513)
|.-|.+||+.. ..++.++.+|...|+++.|.-.| ..+++++.|..|.+--.+.......+... ........+..+.
T Consensus 525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~-t~t~~ktTlYDm~ 603 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH-TQTLSKTTLYDMA 603 (1080)
T ss_pred CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc-ccccccceEEEee
Confidence 99999999854 35678899999999999998776 68999999987765433321112222211 1123356788999
Q ss_pred ecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc
Q 010324 405 LFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH 483 (513)
Q Consensus 405 ~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 483 (513)
..|.. .++++++.|..|++|++. ++..+.+.....+.+....+...|.|-|+++.+.|.++.++|..+|+++..+.+|
T Consensus 604 Vdp~~-k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 604 VDPTS-KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred eCCCc-ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence 99987 899999999999999998 8888899888888889999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 484 EKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 484 ~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
...|+.+.|.+|-+.|++.+.||.|.||+
T Consensus 683 sE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred chheeeeeecccchhheeecCCceEEEEE
Confidence 99999999999999999999999999997
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=3.3e-28 Score=212.71 Aligned_cols=264 Identities=20% Similarity=0.311 Sum_probs=224.0
Q ss_pred CcccccccccccCccc--ceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCc
Q 010324 188 GTAAMKQDVEDMYPTT--LSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDE 265 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~ 265 (513)
+..+-....|+..+.+ ...++. |..+.|+.+.|.++++++++++.|+..+ +|+++..+... ++.||.+
T Consensus 193 gg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d~~~r-~Wnvd~~r~~~--------TLsGHtd 262 (459)
T KOG0288|consen 193 GGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASNDKNLR-LWNVDSLRLRH--------TLSGHTD 262 (459)
T ss_pred cchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCCCcee-eeeccchhhhh--------hhccccc
Confidence 3344445567777776 344444 8889999999999999999999999997 99999887664 5567999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe
Q 010324 266 TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF 345 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 345 (513)
.|+++.|......+++|+.|.+|++||+....+.+++. ..+.+..+..+ ...+++|-.|+.|++||++++.+....
T Consensus 263 kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv 338 (459)
T KOG0288|consen 263 KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV 338 (459)
T ss_pred ceeeehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEec--ceeeeecccccceEEEeccCCceeeEe
Confidence 99999999877779999999999999999999988876 45667777776 567899999999999999999999988
Q ss_pred cccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEE
Q 010324 346 RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM 425 (513)
Q Consensus 346 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~ 425 (513)
..+. .|+++..+++|..+.+++.|.++.+.|+++.+...++.......+++ .+.+.|+|++ .++++|+.||.|++|
T Consensus 339 ~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD--wtrvvfSpd~-~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 339 PLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD--WTRVVFSPDG-SYVAAGSADGSVYIW 414 (459)
T ss_pred ecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc--cceeEECCCC-ceeeeccCCCcEEEE
Confidence 8665 89999999999999999999999999999999888887666544444 8899999988 999999999999999
Q ss_pred EccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEE
Q 010324 426 TLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCF 469 (513)
Q Consensus 426 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 469 (513)
+..+..+............|++++|+|.|..+++++.++.+.+|
T Consensus 415 ~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 415 SVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99965555544444444579999999999999999999999998
No 102
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.1e-28 Score=207.42 Aligned_cols=276 Identities=24% Similarity=0.411 Sum_probs=231.1
Q ss_pred CCCCCceeeccCcccccccccccCcccceeeeec-------cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccc
Q 010324 177 LPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKF-------GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLK 249 (513)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~ 249 (513)
+.|.+.+ +..+..+....+|+....+...-+++ -+...|.|+.||.|...||+|+.||.|+ +|.+.+|..+
T Consensus 221 FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK-vWri~tG~Cl 298 (508)
T KOG0275|consen 221 FSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK-VWRIETGQCL 298 (508)
T ss_pred eCCCCce-EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE-EEEEecchHH
Confidence 4443333 44556666777888777766555543 5678999999999999999999999998 9999999988
Q ss_pred cccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCC
Q 010324 250 KDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS 329 (513)
Q Consensus 250 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 329 (513)
..+.- .|...|+|+.|+.|+..+++++.|.++++.-+.+|++++.+. +|.+.|+...|.+||.++++++.||
T Consensus 299 RrFdr-------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 299 RRFDR-------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred HHhhh-------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCCCeEEEecCCc
Confidence 76652 499999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred cEEEEecCCCceeeEeccc--ccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEec
Q 010324 330 TARIHGLKSGKLLKEFRGH--SSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLF 406 (513)
Q Consensus 330 ~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (513)
+|++|+.++++++.+++.. ..+|+++..-| +...++++....++.+-++. |+.++++.... ...+...+...+
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk---REgGdFi~~~lS 446 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK---REGGDFINAILS 446 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC---ccCCceEEEEec
Confidence 9999999999999988753 55788888877 44578889999999999975 67788877554 345566777889
Q ss_pred CCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 407 PKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 407 ~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
|.+ .++++.+.|+.++.+... |.....+.. +...+..++-+|..+.+++-++||.+++|.
T Consensus 447 pkG-ewiYcigED~vlYCF~~~sG~LE~tl~V---hEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 447 PKG-EWIYCIGEDGVLYCFSVLSGKLERTLPV---HEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCC-cEEEEEccCcEEEEEEeecCceeeeeec---ccccccccccCcccchhhhhcccchhhhcC
Confidence 988 999999999999999987 444444443 345578899999999999999999999995
No 103
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=2.5e-26 Score=217.81 Aligned_cols=317 Identities=18% Similarity=0.290 Sum_probs=256.2
Q ss_pred eccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCC
Q 010324 185 LFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD 264 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~ 264 (513)
+..+........|+....+..++++ ++.+.|+++.=+|--..+|.|..+|+| +++++..++.+..+. |.
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f~-~~~s~IT~ieqsPaLDVVaiG~~~G~V-iifNlK~dkil~sFk---------~d 243 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTFQ-EFFSRITAIEQSPALDVVAIGLENGTV-IIFNLKFDKILMSFK---------QD 243 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEec-ccccceeEeccCCcceEEEEeccCceE-EEEEcccCcEEEEEE---------cc
Confidence 3345556677788999999999998 888999999999998999999999999 599999999887765 54
Q ss_pred -ccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC--C-
Q 010324 265 -ETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS--G- 339 (513)
Q Consensus 265 -~~v~~l~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~- 339 (513)
+.|++++|..||+ .+++|+..|.+.+||++..+.+......|.+.|....|.|....+++++.|+.+++|=..+ |
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence 9999999999987 5566677799999999998888888878999999999999999999999999988885543 3
Q ss_pred -ceeeEecccccceeEEEEc-cCCCEEEEEeCCCcEEEEeCCCC------------------------------------
Q 010324 340 -KLLKEFRGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDLKST------------------------------------ 381 (513)
Q Consensus 340 -~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~------------------------------------ 381 (513)
+.++.-.+|..+..++.|. .+|..+.+++.|++++.+++...
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 3455566899999999987 57778888888887777765321
Q ss_pred -----------------------------ceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeE
Q 010324 382 -----------------------------DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQV 431 (513)
Q Consensus 382 -----------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~ 431 (513)
..-...-.+.+....+..+.+++.++.+ ++.+.|+..|.|-+|++. |-.
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~ 482 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIH 482 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCee
Confidence 1000000011111233567888888887 999999999999999999 445
Q ss_pred EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCcee-----------------------------------
Q 010324 432 VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKL----------------------------------- 476 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----------------------------------- 476 (513)
...+.....+..+++.++...-++.+++++.+|.+.+||...+.+
T Consensus 483 r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 483 RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 555655666788999999999999999999999999999876532
Q ss_pred ------eEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 477 ------EHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 477 ------~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
++.+.+|.+.|++++|||||++|++++.|++|++||.
T Consensus 563 ~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 563 VVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred chhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 2235579999999999999999999999999999983
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.8e-28 Score=222.23 Aligned_cols=281 Identities=18% Similarity=0.364 Sum_probs=229.2
Q ss_pred EEEEC-CCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 010324 218 CARFS-PDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG 296 (513)
Q Consensus 218 ~~~~s-~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~ 296 (513)
.+..+ |+++||++||.||.|+ +|+.......... .....+..|.+.|+.++...+++.|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~-~W~~~~d~~~~s~--~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIR-LWSVTQDSNEPST--PYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKD 105 (735)
T ss_pred hccccCCCCceEEecCCCceEE-EeccccccCCccc--chhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccC
Confidence 34444 4778899999999997 9998754332111 123456679999999999999999999999999999999877
Q ss_pred --ceeeecccccccCeEEEEE-ccCCCEEEEeeCCCcEEEEecCCCc--eeeE--------ec-ccccceeEEEEccCCC
Q 010324 297 --QCLRRLERAHSEGVTSLVF-SRDGSQILSTSFDSTARIHGLKSGK--LLKE--------FR-GHSSYVNDAIFTNDGS 362 (513)
Q Consensus 297 --~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~--------~~-~~~~~v~~~~~~~~~~ 362 (513)
-+..++. .|...|.|+++ .++...+|+|+-|+.|.+||++++. .+.+ +. ++...|.+++.++.|.
T Consensus 106 ~~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t 184 (735)
T KOG0308|consen 106 NTFCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT 184 (735)
T ss_pred cchhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce
Confidence 5667775 89999999999 7888999999999999999999772 2222 22 6778899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccC
Q 010324 363 RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKRE 441 (513)
Q Consensus 363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~ 441 (513)
.+++|+.++-+++||.++++.+..+. +|...|..+..++++ ..+++++.||+|++||+. .+.+.++.. |
T Consensus 185 ~ivsGgtek~lr~wDprt~~kimkLr------GHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~T~~v---H 254 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTCKKIMKLR------GHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLATYIV---H 254 (735)
T ss_pred EEEecCcccceEEeccccccceeeee------ccccceEEEEEcCCC-CeEeecCCCceEEeeeccccceeeeEEe---c
Confidence 99999999999999999988777665 889999999999988 999999999999999998 445555444 3
Q ss_pred CCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 442 GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 442 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
...+.++..+|+-.++++|+.||.|+.=|+++......+-....+|..+..+.+.+-+-+++.|+.|+-|.
T Consensus 255 ~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 255 KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred cCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 44589999999999999999999999999988543333334566788888876555557788899999885
No 105
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.9e-27 Score=197.33 Aligned_cols=255 Identities=18% Similarity=0.273 Sum_probs=202.6
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCC--EEEEEeCCCcE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE--MLASGSQDGKI 288 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~~~dg~i 288 (513)
.|.+.|+|++.+ |.++|+||.|.+|+ |||+........+ ..|.+.|+++.|.++-. .|++|+.||.|
T Consensus 41 aH~~sitavAVs--~~~~aSGssDetI~-IYDm~k~~qlg~l--------l~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 41 AHAGSITALAVS--GPYVASGSSDETIH-IYDMRKRKQLGIL--------LSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred ccccceeEEEec--ceeEeccCCCCcEE-EEeccchhhhcce--------eccccceEEEEecCCcchhheeeecCCCcE
Confidence 899999999995 88999999999997 9999887655433 34999999999999765 89999999999
Q ss_pred EEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEe
Q 010324 289 KVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS 368 (513)
Q Consensus 289 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 368 (513)
.+|+.....++.++. +|...|+.++.+|.|+.-++.+.|+.++.||+-.|+.-...+- ....+.+.|+|.|.+++.++
T Consensus 110 ~iw~~~~W~~~~slK-~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLK-AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred EEEEcCCeEEeeeec-ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEe
Confidence 999999999999997 8999999999999999999999999999999988876555442 22344589999999999988
Q ss_pred CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEEEeecCccCCCcEEE
Q 010324 369 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKREGGDFVA 447 (513)
Q Consensus 369 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~~~~~~ 447 (513)
.++ |-+|.+.+......+..+ ..+.++.| .....+++|..++.|.+||.+. .....+. .|...|-.
T Consensus 188 ~~~-i~i~q~d~A~v~~~i~~~-------~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~---AH~~RVK~ 254 (362)
T KOG0294|consen 188 RNK-IDIYQLDNASVFREIENP-------KRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFL---AHENRVKD 254 (362)
T ss_pred ccE-EEEEecccHhHhhhhhcc-------ccceeeee--cCCceEEEecCCceEEEeccCCCccceeee---cchhheee
Confidence 876 999998876655544322 23444444 3458999999999999999985 3333333 34566777
Q ss_pred EEE--CCCCCEEEEEecCceEEEEECCCc-----eeeEeeecccCCeEEEEE
Q 010324 448 ACV--SPKGEWIYCVGEDRNLYCFSHQSG-----KLEHLMKVHEKDVIGVTH 492 (513)
Q Consensus 448 ~~~--s~~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~ 492 (513)
+.+ .|++.+|+++++||.|++||++.. +++..+.. ...++|+..
T Consensus 255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 255 IASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred eEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 764 778999999999999999999865 34444433 445666654
No 106
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1.2e-27 Score=214.16 Aligned_cols=286 Identities=17% Similarity=0.260 Sum_probs=237.1
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 289 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 289 (513)
..|..-|.++.+|...+++.||+. |.|+ |||+....-..... . -......+-|.++...|||+.|++|+.-.++.
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVK-VWdis~pg~k~Pvs--q-Ldcl~rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVK-VWDISQPGNKSPVS--Q-LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEE-EeeccCCCCCCccc--c-ccccCcccceeeeEecCCCceEEeccccceee
Confidence 478888888999999999999985 5687 99997542211110 0 01112467899999999999999999999999
Q ss_pred EEEcCCcceeeecc-cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEe
Q 010324 290 VWRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS 368 (513)
Q Consensus 290 vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 368 (513)
|||+.......... ....-.+.+++.+||.+..++++.||.|.|||+.+...+..|++|...+.||.+++||..|.+|+
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG 570 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG 570 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC
Confidence 99998765432222 12335678899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEE
Q 010324 369 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAA 448 (513)
Q Consensus 369 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 448 (513)
-|.+|+.||+++++.+.... ..+.|.++..+|.+ .++++|-.++.+.+....+.....+.. +...|.++
T Consensus 571 lDntvRcWDlregrqlqqhd-------F~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~kyqlhl---heScVLSl 639 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQHD-------FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEKYQLHL---HESCVLSL 639 (705)
T ss_pred Cccceeehhhhhhhhhhhhh-------hhhhheecccCCCc-cceeeecccCcEEEEecCCccceeecc---cccEEEEE
Confidence 99999999999988665543 34678999999988 999999999999999888655444433 56778999
Q ss_pred EECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 449 CVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 449 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.|++.|+++++.+.|+.+..|...-|..+...+ ....|.++..+.|.++++|||.|....||.
T Consensus 640 KFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred EecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 999999999999999999999999888777665 457899999999999999999998887774
No 107
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=214.84 Aligned_cols=263 Identities=20% Similarity=0.239 Sum_probs=205.3
Q ss_pred ccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCc----ceeeecccccccCeEEEEEccCCCEEEE
Q 010324 249 KKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG----QCLRRLERAHSEGVTSLVFSRDGSQILS 324 (513)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 324 (513)
+..++....-.+.+|...|.++++.|.|..|++|+.|..|++||+..- +..+.+.......|.++.|++.|..|++
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEE
Confidence 344555556678889999999999999999999999999999998632 2344455566778999999999999999
Q ss_pred eeCCCcEEEEecCCCceeeE-------------ecccccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeEeecCC
Q 010324 325 TSFDSTARIHGLKSGKLLKE-------------FRGHSSYVNDAIFTNDG-SRVVTASSDCTVKVWDLKSTDCLQTFKPP 390 (513)
Q Consensus 325 ~~~dg~i~i~d~~~~~~~~~-------------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 390 (513)
.+.....+++|- .|..+.. .++|...++|.+|+|+. ..+++++.||++++||+...+.....-.+
T Consensus 232 vsg~aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 232 VSGSAQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred EecCcceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 999999999995 4543332 25788899999999965 47999999999999999876544433333
Q ss_pred CCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe---EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEE
Q 010324 391 PPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ---VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLY 467 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 467 (513)
....+..-++++++|++++ ..+++|..||.|.+|+..+. ....+...+..+..++++.||++|++|++-+.|++++
T Consensus 311 k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred ccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 3344666788999999998 77999999999999998643 2333344444455899999999999999999999999
Q ss_pred EEECCCce-eeEeeecc--cCCeEEEEEcCCCCEEEEEEC------CCeEEeccC
Q 010324 468 CFSHQSGK-LEHLMKVH--EKDVIGVTHHPHRNLLATYGE------DCTMKLWKP 513 (513)
Q Consensus 468 iwd~~~~~-~~~~~~~h--~~~v~~~~~~p~~~~l~s~~~------dg~i~iWdp 513 (513)
+||++..+ ++....+- .-+-+.++|+|+..+|++|+. .|++.+||+
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 99998753 44444332 235678999999999999863 466777764
No 108
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=213.07 Aligned_cols=238 Identities=18% Similarity=0.261 Sum_probs=200.8
Q ss_pred CccEEEEEEcCCCCE-EEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee
Q 010324 264 DETVLCIEFSRDSEM-LASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 342 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 342 (513)
.++|.+++|+|...+ +|+.+ .-.+.+|+..+....+++. .....+.++.|-.||+.+++|+..|.|+++|+++...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 478999999995443 44443 4579999998888777776 67889999999999999999999999999998888888
Q ss_pred eEecccccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc
Q 010324 343 KEFRGHSSYVNDAIFTNDG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 421 (513)
Q Consensus 343 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 421 (513)
..+.+|..+|..+.|+|++ ..+++|++|+.+++||+.+......+ .+|...|.+.+++|.++.++++|+.||.
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l------~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL------SGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe------cCCcceeEeeccccCCCeEEEecCCCce
Confidence 9999999999999999955 56778888899999999988753344 3889999999999999889999999999
Q ss_pred EEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce-eeEeeecccCCeEEEEEcCCCCEEE
Q 010324 422 IYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK-LEHLMKVHEKDVIGVTHHPHRNLLA 500 (513)
Q Consensus 422 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~ 500 (513)
|++||.+......... .|+.+|..+++-|.|..+++++ .+.|++||+.+|. .+.....|...|+|+++..++..|+
T Consensus 178 vrl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred EEEEEeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 9999998443222222 3567899999999999998887 5789999999654 4455555999999999999999999
Q ss_pred EEECCCeEEecc
Q 010324 501 TYGEDCTMKLWK 512 (513)
Q Consensus 501 s~~~dg~i~iWd 512 (513)
|||-||.|++||
T Consensus 255 S~sLD~~VKVfd 266 (487)
T KOG0310|consen 255 SGSLDRHVKVFD 266 (487)
T ss_pred ecccccceEEEE
Confidence 999999999997
No 109
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.7e-27 Score=214.15 Aligned_cols=290 Identities=18% Similarity=0.315 Sum_probs=230.9
Q ss_pred ccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCC
Q 010324 198 DMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE 277 (513)
Q Consensus 198 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 277 (513)
..+|..+...++ ||++.|.|+..+|.|.+||+|+.||+++ ||.+.+|..+..+. -.+.|.|++|+|.+.
T Consensus 386 rPFPt~~~lvyr-GHtg~Vr~iSvdp~G~wlasGsdDGtvr-iWEi~TgRcvr~~~---------~d~~I~~vaw~P~~~ 454 (733)
T KOG0650|consen 386 RPFPTRCALVYR-GHTGLVRSISVDPSGEWLASGSDDGTVR-IWEIATGRCVRTVQ---------FDSEIRSVAWNPLSD 454 (733)
T ss_pred CCCcceeeeeEe-ccCCeEEEEEecCCcceeeecCCCCcEE-EEEeecceEEEEEe---------ecceeEEEEecCCCC
Confidence 456777777776 9999999999999999999999999998 99999999988776 366899999999654
Q ss_pred --EEEEEeCCCcEEEEEcCCcc-------------------------------------eeeecccccccCeEEEEEccC
Q 010324 278 --MLASGSQDGKIKVWRIRSGQ-------------------------------------CLRRLERAHSEGVTSLVFSRD 318 (513)
Q Consensus 278 --~l~s~~~dg~i~vwd~~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~ 318 (513)
.||++- ++.+.|-+..-|. -+.. ...|...|..+.|+..
T Consensus 455 ~~vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~-~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 455 LCVLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCI-VIKHPKSIRQVTWHRK 532 (733)
T ss_pred ceeEEEEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEE-EEecCCccceeeeecC
Confidence 344443 3334444321110 0111 1247788999999999
Q ss_pred CCEEEEeeCC---CcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCC
Q 010324 319 GSQILSTSFD---STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRG 395 (513)
Q Consensus 319 ~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 395 (513)
|.||++...+ ..|.|+++........|+...+.|.++.|+|...+|++++. ..|++||+.....+..+. .
T Consensus 533 GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~------t 605 (733)
T KOG0650|consen 533 GDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL------T 605 (733)
T ss_pred CceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHh------c
Confidence 9999988664 47999999888777778777888999999999999988876 569999998876666554 3
Q ss_pred CCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 396 GDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 396 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
....+.+++.+|.+ ..+++++.++.+..+|++ .+..+.+.. |...++++++++.-.++++|+.||++.||.-.-
T Consensus 606 g~kwiS~msihp~G-Dnli~gs~d~k~~WfDldlsskPyk~lr~---H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 606 GSKWISSMSIHPNG-DNLILGSYDKKMCWFDLDLSSKPYKTLRL---HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV 681 (733)
T ss_pred CCeeeeeeeecCCC-CeEEEecCCCeeEEEEcccCcchhHHhhh---hhhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence 45689999999988 888899999999999998 334444433 456788999999999999999999999986321
Q ss_pred ---------ceeeEeeecccCC----eEEEEEcCCCCEEEEEECCCeEEec
Q 010324 474 ---------GKLEHLMKVHEKD----VIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 474 ---------~~~~~~~~~h~~~----v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
--++..+++|... |..+.|||...+|+++|.||+|++|
T Consensus 682 Y~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 682 YNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 1245778888765 8899999999999999999999998
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.3e-26 Score=194.21 Aligned_cols=237 Identities=18% Similarity=0.261 Sum_probs=193.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 342 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 342 (513)
....|.++.|+|.+..|++++.||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.+++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 3578999999999999999999999999999988766666 4899999999996 568999999999999999877654
Q ss_pred eEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcE
Q 010324 343 KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 422 (513)
Q Consensus 343 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 422 (513)
.+..|..+|.|+.+++....+++|+.|++|++||.+......++. ....|.++.... +.|++|+.+..+
T Consensus 89 -~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-------~~kkVy~~~v~g---~~LvVg~~~r~v 157 (323)
T KOG1036|consen 89 -QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-------QGKKVYCMDVSG---NRLVVGTSDRKV 157 (323)
T ss_pred -eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-------cCceEEEEeccC---CEEEEeecCceE
Confidence 455699999999999988899999999999999999754444443 223677766543 789999999999
Q ss_pred EEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc----eeeEeeecccC---------CeEE
Q 010324 423 YIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG----KLEHLMKVHEK---------DVIG 489 (513)
Q Consensus 423 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~---------~v~~ 489 (513)
.+||++............-...+.++++-|++.=.++++-||.|.+=.+... .....++.|.. +|++
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA 237 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence 9999984333222222233456789999998888999999999998777665 44556777753 6999
Q ss_pred EEEcCCCCEEEEEECCCeEEeccC
Q 010324 490 VTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 490 ~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
++|||-...|||||.||.|.+||+
T Consensus 238 i~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred eEeccccceEEecCCCceEEEccC
Confidence 999999999999999999999996
No 111
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=7.4e-27 Score=196.94 Aligned_cols=219 Identities=19% Similarity=0.353 Sum_probs=185.3
Q ss_pred ccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC------------c------ceeeecccccccCeEEEEEccCCC
Q 010324 259 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS------------G------QCLRRLERAHSEGVTSLVFSRDGS 320 (513)
Q Consensus 259 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~------------~------~~~~~~~~~~~~~v~~~~~~~~~~ 320 (513)
.+..|.+++.+.+|+|||.++|+|+.|.+|+|.|++. | -.++++. .|..+|+++.|+|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRET 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhh
Confidence 4456999999999999999999999999999999861 1 1345554 7999999999999999
Q ss_pred EEEEeeCCCcEEEEecCCCceeeEec--ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCc
Q 010324 321 QILSTSFDSTARIHGLKSGKLLKEFR--GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA 398 (513)
Q Consensus 321 ~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 398 (513)
.|++|+.|++|+++|.......+.++ ....+|.++.|+|.|.++++|....++++||+.+.++...-. +...|..
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan---Pd~qht~ 262 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN---PDDQHTG 262 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC---ccccccc
Confidence 99999999999999996554333222 245689999999999999999999999999999987765544 3347899
Q ss_pred eeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceee
Q 010324 399 SVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE 477 (513)
Q Consensus 399 ~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 477 (513)
.|+++.+++.+ .+.++++.||.|++||-- ++.+..+...+ .+..|.+..|..+|+|+.+.+.|..+++|.+.+++++
T Consensus 263 ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 263 AITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 99999999988 999999999999999965 56666665544 4677889999999999999999999999999999999
Q ss_pred Eeeecc
Q 010324 478 HLMKVH 483 (513)
Q Consensus 478 ~~~~~h 483 (513)
..+.+-
T Consensus 341 ~~YtGA 346 (430)
T KOG0640|consen 341 KEYTGA 346 (430)
T ss_pred EEEecC
Confidence 887653
No 112
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=7.1e-27 Score=215.10 Aligned_cols=289 Identities=19% Similarity=0.306 Sum_probs=210.5
Q ss_pred EEECC---CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010324 219 ARFSP---DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS 295 (513)
Q Consensus 219 ~~~s~---~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~ 295 (513)
+.|++ ....||.+..||.|. ++|....... ..-.....+..|.+.|.++.|.|....|++++.|.++++||+.+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~-l~dt~~~~fr--~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGII-LFDTKSIVFR--LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccCCCCccceEEEecCCCcee-eecchhhhcc--hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence 45554 456899999999995 9997654332 11112234566999999999999777899999999999999999
Q ss_pred cceeee--cccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCc---------------------------eeeEe
Q 010324 296 GQCLRR--LERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGK---------------------------LLKEF 345 (513)
Q Consensus 296 ~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---------------------------~~~~~ 345 (513)
+.++.. +. +|...|.+++|.| |...|++|+.||.|.|||++-.. .+...
T Consensus 132 s~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 132 SRLVGGRLNL-GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred ceeecceeec-ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 888766 54 8999999999999 45678899999999999996322 01111
Q ss_pred cccccceeE---EEEccCCCEEEEEeC-CCcEEEEeCCCCceeEeecCCCCC--CCC---CceeeEEEecCCCCCeEEEE
Q 010324 346 RGHSSYVND---AIFTNDGSRVVTASS-DCTVKVWDLKSTDCLQTFKPPPPL--RGG---DASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 346 ~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~--~~~---~~~v~~~~~~~~~~~~l~~~ 416 (513)
..+...|.+ +.+..|...|++++. |+.|++||++.........+.... ..+ ...+.++.....+ .++++.
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~As 289 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFAS 289 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEE
Confidence 233344444 555567788999887 999999999987655443332211 111 3356667777666 455555
Q ss_pred cCCCcEEEEEccCeEEEEe--ecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce-eeEeeecccCCeEEEEEc
Q 010324 417 NKTSSIYIMTLQGQVVKSF--SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK-LEHLMKVHEKDVIGVTHH 493 (513)
Q Consensus 417 ~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~ 493 (513)
+.|+.|++|++.+..+... ..+.........-+.+|++.++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.
T Consensus 290 CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~ 369 (720)
T KOG0321|consen 290 CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWL 369 (720)
T ss_pred ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeec
Confidence 5599999999984433222 2222223334456779999999999999999999998765 456678999999999999
Q ss_pred CC-CCEEEEEECCCeEEecc
Q 010324 494 PH-RNLLATYGEDCTMKLWK 512 (513)
Q Consensus 494 p~-~~~l~s~~~dg~i~iWd 512 (513)
|. -.-++++++|.+++||+
T Consensus 370 pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 370 PSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cccCCCceeeccCcceEEEe
Confidence 93 34577889999999997
No 113
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.2e-26 Score=190.56 Aligned_cols=251 Identities=18% Similarity=0.255 Sum_probs=196.5
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc----eeeecccccccCeEEEEEcc--CCCEEEEeeCCCcEEEE
Q 010324 261 MMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ----CLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIH 334 (513)
Q Consensus 261 ~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~ 334 (513)
.+|.+-|.|+.|.+.|+.+|+|+.|++|+|||..+.. +..... .|.+.|..+.|.+ -|+.+++++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 3588999999999999999999999999999975433 444454 7999999999976 58899999999999999
Q ss_pred ecCC---------CceeeEecccccceeEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeEeecCCC-------CCCCC
Q 010324 335 GLKS---------GKLLKEFRGHSSYVNDAIFTN--DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP-------PLRGG 396 (513)
Q Consensus 335 d~~~---------~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~ 396 (513)
.-.. -....++....+.|+++.|.| -|-.|++++.||.++||+.-....+..+.... +...+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 7521 123445666778899999999 46689999999999999876543333222211 22245
Q ss_pred CceeeEEEecCCC--CCeEEEEcCC-----CcEEEEEcc--CeEEEEeecCccCCCcEEEEEECCC----CCEEEEEecC
Q 010324 397 DASVNSVHLFPKN--PDHIVVCNKT-----SSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPK----GEWIYCVGED 463 (513)
Q Consensus 397 ~~~v~~~~~~~~~--~~~l~~~~~~-----~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~----~~~l~~g~~d 463 (513)
..+..|+.|+|.. +.++++|+.+ +.++||... ++..........+..+|+.++|.|+ -..||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 6678899998753 4677777766 578888776 4455555555677889999999996 3578999999
Q ss_pred ceEEEEECCCc--------------------eeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 464 RNLYCFSHQSG--------------------KLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 464 g~i~iwd~~~~--------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
| |+||++... +.+..+..|.+.|..+.|+-.|..|++.|+||.||+|+.
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 9 999998731 244567789999999999999999999999999999974
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.3e-26 Score=204.02 Aligned_cols=240 Identities=21% Similarity=0.341 Sum_probs=203.7
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceee-ecc----------------cccccCeEEEEEccCCCEEEE
Q 010324 262 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLR-RLE----------------RAHSEGVTSLVFSRDGSQILS 324 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~----------------~~~~~~v~~~~~~~~~~~l~~ 324 (513)
.|.-+|.|++++|++.+.++++.+|+|.=|++.+|+... .+. ..|...+.+++.++||++|++
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 499999999999999999999999999999998887431 111 157788999999999999999
Q ss_pred eeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEE
Q 010324 325 TSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVH 404 (513)
Q Consensus 325 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (513)
|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|++|++|++.....+.++. +|...|.++.
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly------GHqd~v~~Id 293 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY------GHQDGVLGID 293 (479)
T ss_pred cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh------CCccceeeec
Confidence 9999999999999999999999999999999999888899999999999999998776666554 7888999988
Q ss_pred ecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeee-cc
Q 010324 405 LFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK-VH 483 (513)
Q Consensus 405 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h 483 (513)
..... ..+.+|+.|+++++|++.......+.. +.+.+-+++|-.+ ..+++|+.+|.|.+|++...+++.+.. +|
T Consensus 294 aL~re-R~vtVGgrDrT~rlwKi~eesqlifrg---~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 294 ALSRE-RCVTVGGRDRTVRLWKIPEESQLIFRG---GEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred hhccc-ceEEeccccceeEEEeccccceeeeeC---CCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccc
Confidence 87765 677777899999999996554444443 2456778888544 578899999999999999988887654 22
Q ss_pred -----------cCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 484 -----------EKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 484 -----------~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
...|++++..|..+++|+|+.+|.|++|.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 12689999999999999999999999996
No 115
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=1.1e-24 Score=203.35 Aligned_cols=268 Identities=15% Similarity=0.192 Sum_probs=199.6
Q ss_pred CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCcceeeecc
Q 010324 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML-ASGSQDGKIKVWRIRSGQCLRRLE 303 (513)
Q Consensus 225 g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~ 303 (513)
++.+++++.|+.++ +||..+++....+. ++ ..+.+++|+|+++.+ ++++.++.|++||..+++....+.
T Consensus 1 ~~~~~s~~~d~~v~-~~d~~t~~~~~~~~--------~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 70 (300)
T TIGR03866 1 EKAYVSNEKDNTIS-VIDTATLEVTRTFP--------VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP 70 (300)
T ss_pred CcEEEEecCCCEEE-EEECCCCceEEEEE--------CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc
Confidence 35788999999996 99998876554332 23 346789999999876 566778999999999988877665
Q ss_pred cccccCeEEEEEccCCCEEEEe-eCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCC-cEEEEeCCCC
Q 010324 304 RAHSEGVTSLVFSRDGSQILST-SFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC-TVKVWDLKST 381 (513)
Q Consensus 304 ~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~ 381 (513)
.+ ..+..++|+|+++.++++ +.++.+++||+.+++.+..+.. ...+.+++|+|+|+++++++.++ .+.+||.+++
T Consensus 71 -~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~ 147 (300)
T TIGR03866 71 -SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY 147 (300)
T ss_pred -CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 23 335678999999987655 5689999999998887777653 23468899999999999988775 4677899887
Q ss_pred ceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEEEeecCc----cCCCcEEEEEECCCCCE
Q 010324 382 DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGK----REGGDFVAACVSPKGEW 456 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~----~~~~~~~~~~~s~~~~~ 456 (513)
+....... ...+..+.|+|++..+++++..++.+++||+.. .....+.... ........++++|++++
T Consensus 148 ~~~~~~~~-------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 220 (300)
T TIGR03866 148 EIVDNVLV-------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT 220 (300)
T ss_pred eEEEEEEc-------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCE
Confidence 76554331 123467889998844445666799999999984 3334333211 01122346889999998
Q ss_pred EEEE-ecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEE-ECCCeEEeccC
Q 010324 457 IYCV-GEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATY-GEDCTMKLWKP 513 (513)
Q Consensus 457 l~~g-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-~~dg~i~iWdp 513 (513)
++++ +.++.+.+||..+++.+..+. +...+.+++|+|++.+|+++ +.+|.|++||+
T Consensus 221 ~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 221 AFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 6554 457789999999988776553 44579999999999998876 46999999985
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.5e-26 Score=202.61 Aligned_cols=252 Identities=24% Similarity=0.362 Sum_probs=208.9
Q ss_pred CEEEEEecC-CeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeccc
Q 010324 226 QFLVSCSFD-GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER 304 (513)
Q Consensus 226 ~~la~g~~d-g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 304 (513)
.+++++... ..+. +|.+......... ..-.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+..+.
T Consensus 51 ~yllsaq~~rp~l~-vw~i~k~~~~~q~--------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~- 120 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLH-VWEILKKDQVVQY--------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS- 120 (476)
T ss_pred hheeeecccCcccc-ccccCchhhhhhh--------cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-
Confidence 466666544 3564 8988765433211 1146889999999999999999999999999999999998885
Q ss_pred ccccCeEEEEEccCCCEEEEeeCCCcEEEEecC---------CCceeeEecccccceeEEEEccC--CCEEEEEeCCCcE
Q 010324 305 AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK---------SGKLLKEFRGHSSYVNDAIFTND--GSRVVTASSDCTV 373 (513)
Q Consensus 305 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i 373 (513)
.|-..|+|+.|+-||.+|++|+.||.|.+|++. +-++...+..|.-+|+++...+. ..+++|++.|.++
T Consensus 121 aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 121 AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence 899999999999999999999999999999763 34678889999999999998775 3589999999999
Q ss_pred EEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeE---E-------------EEeec
Q 010324 374 KVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV---V-------------KSFSS 437 (513)
Q Consensus 374 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~-------------~~~~~ 437 (513)
++||+..+..+.++..+ .++.+++..|.. ..+++|+.+|.|.+.++.+.. . .....
T Consensus 201 k~wdlS~g~LLlti~fp-------~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~ 272 (476)
T KOG0646|consen 201 KLWDLSLGVLLLTITFP-------SSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV 272 (476)
T ss_pred EEEEeccceeeEEEecC-------CcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec
Confidence 99999999988887644 478999999987 899999999999998875211 1 11112
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCC
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 495 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~ 495 (513)
++..+..|+|++++.||..|++|+.||.|+|||+.+.++++++....++|+.+.+.|-
T Consensus 273 Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 273 GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 2233458999999999999999999999999999999999998877899999999774
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.9e-26 Score=202.38 Aligned_cols=269 Identities=19% Similarity=0.256 Sum_probs=207.6
Q ss_pred EecCC-eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCcceeeeccccccc
Q 010324 231 CSFDG-FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-DGKIKVWRIRSGQCLRRLERAHSE 308 (513)
Q Consensus 231 g~~dg-~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~ 308 (513)
++.|- .+ ++||+.+|.....+... ....+|. +-+. .+.+++++.. ...+.+|.+......... ..-.+
T Consensus 13 sS~d~~~~-~~~dl~TGt~~~~ykg~--~~a~~~s----l~~l--~~~yllsaq~~rp~l~vw~i~k~~~~~q~-~v~Pg 82 (476)
T KOG0646|consen 13 SSFDPINC-IVWDLRTGTSLLQYKGS--YLAQAAS----LTAL--NNEYLLSAQLKRPLLHVWEILKKDQVVQY-IVLPG 82 (476)
T ss_pred cCCCCcce-eEEecCCCceeEEecCc--ccccchh----hhhh--chhheeeecccCccccccccCchhhhhhh-ccccc
Confidence 34443 36 49999998766554421 0111111 1111 2356666643 458999998765554422 24678
Q ss_pred CeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeE
Q 010324 309 GVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD---CLQ 385 (513)
Q Consensus 309 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~ 385 (513)
+|.+++-+|+|.+++.|+..|.|++|.+.+|..+..+.+|-..|+++.|+.||.++++|+.||.|.+|++...- ...
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~ 162 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH 162 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999864321 111
Q ss_pred eecCCCCCCCCCceeeEEEecCC-CCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC
Q 010324 386 TFKPPPPLRGGDASVNSVHLFPK-NPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED 463 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 463 (513)
...+...+..|.-+|+++...+. ....+++++.|.++++||+. +..+..+.. ...+.+++.+|.++.+++|+++
T Consensus 163 ~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f----p~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 163 SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF----PSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec----CCcceeEEEcccccEEEecCCc
Confidence 22333345578899999988776 34789999999999999998 555555554 3458899999999999999999
Q ss_pred ceEEEEECCCc----------------eeeEeeecccC--CeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 464 RNLYCFSHQSG----------------KLEHLMKVHEK--DVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 464 g~i~iwd~~~~----------------~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
|.|.+.++... ..+..+.+|.+ +|+|++.+-||.+|++|+.||.|+|||+
T Consensus 239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 99999887532 24456778988 9999999999999999999999999996
No 118
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.9e-27 Score=204.53 Aligned_cols=239 Identities=21% Similarity=0.363 Sum_probs=203.9
Q ss_pred cccccCCccEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEec
Q 010324 258 ETFMMHDETVLCIEFSRDS-EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 336 (513)
Q Consensus 258 ~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 336 (513)
..+.||.+.|.|++=+|.. ..+++|+.||.|++||+.+..+..++. +|.+.|..+++.. ..+++++.|.+|+.|.+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc--cceEEecCCcceeeeec
Confidence 4567899999999999976 789999999999999999999999997 8999999999986 67889999999999998
Q ss_pred CCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE
Q 010324 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 416 (513)
. +.++.++-+ .+.+..+.-+..++.++|++.+ |.|||.....++.++. -....+.++.++|.....|++|
T Consensus 137 ~-~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~sms------wG~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 137 D-GPPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMS------WGADSISSVKFNPVETSILASC 206 (433)
T ss_pred c-CCcceeeec-cccccccccccccccccccCce--eeecccccCCccceee------cCCCceeEEecCCCcchheeee
Confidence 4 456666654 3457777777777888888764 9999998877777776 3456899999999998999999
Q ss_pred cCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc-eeeEeeecccCCeEEEEEcC
Q 010324 417 NKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG-KLEHLMKVHEKDVIGVTHHP 494 (513)
Q Consensus 417 ~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p 494 (513)
..|+.|.+||++ +..++.+.... ....+||+|.+-.+++|++|..++.||++.- +++....+|.+.|.+++|+|
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m----RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM----RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred ccCCceEEEecccCCccceeeeec----cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 999999999998 66666655433 3568999998888889999999999999864 56788899999999999999
Q ss_pred CCCEEEEEECCCeEEeccC
Q 010324 495 HRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 495 ~~~~l~s~~~dg~i~iWdp 513 (513)
.|+-+++||.|.+|+||..
T Consensus 283 tG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred CcchhccccccceEEEeec
Confidence 9999999999999999863
No 119
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.4e-25 Score=176.79 Aligned_cols=250 Identities=21% Similarity=0.309 Sum_probs=202.4
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC----CCCEEEEEeC-
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR----DSEMLASGSQ- 284 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~l~s~~~- 284 (513)
.+|++.|.|.+|||+|.++|+|+.|.+|+ +.-++...... ....-.+..|.+.|..++|-. .|..|++++.
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik-~l~fn~dt~~~---~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIK-VLPFNADTCNA---TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEE-EEecccccccc---cCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 48999999999999999999999999998 65544322211 112234556999999999965 3557777654
Q ss_pred CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecc-------cccceeEEEE
Q 010324 285 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG-------HSSYVNDAIF 357 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~ 357 (513)
|..|++-|..+|+....+. +|.+.|.++- +-+|-++++|+.|.+|++||++-..++..+.. ..+.|.+++.
T Consensus 162 dc~iy~tdc~~g~~~~a~s-ghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALS-GHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred cceEEEeecCCCCcceeec-CCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 6778888999999999887 8999887763 33688999999999999999998888877642 2367999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeec
Q 010324 358 TNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSS 437 (513)
Q Consensus 358 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 437 (513)
.|.|+.|++|-.|....+||++.++.++.+. .|...|.++.|+|.. .++++|+.|..|++-|+.|.....+..
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~------phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~ 312 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFH------PHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPI 312 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeC------CCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCce
Confidence 9999999999999999999999999998887 467799999999976 899999999999999999754332221
Q ss_pred --CccCCCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 438 --GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 438 --~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
...|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 313 ~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 313 MVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 12345668889999999889999999999999753
No 120
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.5e-25 Score=203.81 Aligned_cols=282 Identities=17% Similarity=0.273 Sum_probs=228.2
Q ss_pred ccCceeEEEECCCCCEEEEEecCCeEEEEEecccccccccccccccccccc-CCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 212 TKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMM-HDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
..+.|.|+||+.+.+.||.+-.||.|. ||++..+-... ..+.| -...|-+++|++ +..|.+.+.+|.|.-
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IE-iwN~~~~w~~~-------~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~E 94 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIE-IWNLSNNWFLE-------PVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITE 94 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEE-EEccCCCceee-------EEEecCCCCceeeEEEcc-CCeEEeecCCceEEE
Confidence 467899999999999999999999997 99998753322 22333 357899999995 456888889999999
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeE--ecccccceeEEEEccCCCEEEEEe
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE--FRGHSSYVNDAIFTNDGSRVVTAS 368 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~ 368 (513)
||+.+++....+. ...+.|++++.+|.+..++.|+.||.++.++...++.... +...+++|.+++|+|++..+++|+
T Consensus 95 wDl~~lk~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 95 WDLHTLKQKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred EecccCceeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 9999999998887 7889999999999999999999999888888877765543 444578999999999999999999
Q ss_pred CCCcEEEEeCCCCceeEee--cCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcE
Q 010324 369 SDCTVKVWDLKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDF 445 (513)
Q Consensus 369 ~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~ 445 (513)
.||.|++||..++...... .......+...-|.++.+..+ ..+++|...|.|.+||.. +..+..+.. +...+
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS~~~---h~adV 248 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQSHSC---HDADV 248 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhhhhh---hhcce
Confidence 9999999999998876622 122212234556788888744 799999999999999998 444444443 45679
Q ss_pred EEEEECCCCCEEEEEecCceEEEEECCCcee----eEeeecccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 446 VAACVSPKGEWIYCVGEDRNLYCFSHQSGKL----EHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 446 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
.+++..+++.++++++.|+.|.-|...+++. ......|...|.+++..++ .+++||.|+++.+
T Consensus 249 l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 249 LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 9999999999999999999999998876643 2233468888999999776 8999999998765
No 121
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-26 Score=188.28 Aligned_cols=248 Identities=22% Similarity=0.267 Sum_probs=198.0
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc---eeeecccccccCeEEEEEcc--CCCEEEEeeCCCcEEEEec
Q 010324 262 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ---CLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIHGL 336 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~ 336 (513)
.|.+.|.++...--|+.||||+.|++|+|+.++... .+.++. +|.++|..++|.. -|.+|+++++||.|.||.-
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 488888888887789999999999999999997654 456665 9999999999976 7999999999999999998
Q ss_pred CCCc--eeeEecccccceeEEEEccC--CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC---
Q 010324 337 KSGK--LLKEFRGHSSYVNDAIFTND--GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN--- 409 (513)
Q Consensus 337 ~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--- 409 (513)
.+++ ....+..|...|++++|.|. |-.|++++.||.|.+.+.++... ........+|...+++++|.|..
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC---ccchhhhhccccccceeeecCcCCCc
Confidence 7774 34456779999999999884 56899999999999999876511 11222334788899999999862
Q ss_pred ----------CCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCC----CEEEEEecCceEEEEECCCce
Q 010324 410 ----------PDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKG----EWIYCVGEDRNLYCFSHQSGK 475 (513)
Q Consensus 410 ----------~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~g~~dg~i~iwd~~~~~ 475 (513)
...|++++.|..|++|+.+...-..-.....|...+..++|.|.- .+|++++.||++.||......
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 146999999999999999854222222234567788999999864 589999999999999876321
Q ss_pred ---eeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 476 ---LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 476 ---~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
....+......+..+.|++.|++|+.++.|+.|.+|++
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 12233345678999999999999999999999999974
No 122
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=1.2e-25 Score=199.41 Aligned_cols=294 Identities=19% Similarity=0.235 Sum_probs=222.1
Q ss_pred cccCceeEEEECCCC--CEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEEEeCCCc
Q 010324 211 GTKSHAECARFSPDG--QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGK 287 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g--~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~ 287 (513)
-|.++|+|++|+|.. +.+|+|..-|.|- +||+.+.+... .....+..|..+|.+|.|+| +...+++.|.||+
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG-~Wn~~~~~~d~----d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVG-LWNFGTQEKDK----DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEE-EEecCCCCCcc----CceEEeccCCccccceEecCCChhheeeeccCce
Confidence 678999999999954 5899999999996 99996332221 12235566999999999999 5568999999999
Q ss_pred EEEEEcCCcceeeeccc-ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce-eeEecccccceeEEEEccCC-CEE
Q 010324 288 IKVWRIRSGQCLRRLER-AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL-LKEFRGHSSYVNDAIFTNDG-SRV 364 (513)
Q Consensus 288 i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l 364 (513)
|++-|++.+.....+.. .....+.++.|+.+...+++++.=|...+||.+++.. ...+.-|...|++++++|-. .+|
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99999987654333321 2455678888988888888888888999999998765 66677788899999999954 478
Q ss_pred EEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc----C-eEEEEeecCc
Q 010324 365 VTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ----G-QVVKSFSSGK 439 (513)
Q Consensus 365 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~----~-~~~~~~~~~~ 439 (513)
+|++.|++.+|||++....... +......|...|.+..|+|.+.. +++.+.|..|++||.. . .....+....
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred eecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccC
Confidence 9999999999999997543332 11223468889999999999966 9999999999999984 1 1222222211
Q ss_pred cCCC--cEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccC-CeEE-EEEcCCCCEEEEE-ECCCeEEecc
Q 010324 440 REGG--DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEK-DVIG-VTHHPHRNLLATY-GEDCTMKLWK 512 (513)
Q Consensus 440 ~~~~--~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~-~~~~p~~~~l~s~-~~dg~i~iWd 512 (513)
.++. ......|.|+..++++|..-..|-|+|-..++.+..+..... .|.+ ..|||-+..+++| +..|.|.||-
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 1212 234678999999999999999999999999987777654433 4444 4799988855555 4778888883
No 123
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=4.5e-24 Score=191.53 Aligned_cols=299 Identities=19% Similarity=0.317 Sum_probs=232.1
Q ss_pred cccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEecccccccccccccccccccc-CCccEEE
Q 010324 191 AMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMM-HDETVLC 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~-h~~~v~~ 269 (513)
+....+|+.......-.++ ..+..|..+.|+|.+.-|+.....|.+ .+|+...+.+.+.... +.. ....|.|
T Consensus 179 ~h~lSVWdWqk~~~~~~vk-~sne~v~~a~FHPtd~nliit~Gk~H~-~Fw~~~~~~l~k~~~~-----fek~ekk~Vl~ 251 (626)
T KOG2106|consen 179 PHMLSVWDWQKKAKLGPVK-TSNEVVFLATFHPTDPNLIITCGKGHL-YFWTLRGGSLVKRQGI-----FEKREKKFVLC 251 (626)
T ss_pred ccccchhhchhhhccCcce-eccceEEEEEeccCCCcEEEEeCCceE-EEEEccCCceEEEeec-----cccccceEEEE
Confidence 3344566666665555555 456678889999976655555557788 4999988876654332 222 2367999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc---------
Q 010324 270 IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK--------- 340 (513)
Q Consensus 270 l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------- 340 (513)
++|.++|+ +++|..+|.|.||+..+.+..+... .|.+.|.+++...+|.. ++|+.|..|..||-.-.+
T Consensus 252 v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 252 VTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRETELPEQ 328 (626)
T ss_pred EEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccE-eecCccceEEeccccccccccccCchh
Confidence 99999987 7899999999999998888777776 89999999999999864 559999999999842100
Q ss_pred -------------------------------eeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecC
Q 010324 341 -------------------------------LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP 389 (513)
Q Consensus 341 -------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 389 (513)
......+|......++.+|+.+.+++++.|+.+++|+ ..+...+..
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~- 405 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI- 405 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-
Confidence 0011235666788889999999999999999999999 444444433
Q ss_pred CCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEE
Q 010324 390 PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCF 469 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 469 (513)
...+..++.|+|.+ .+++|+..|...+.|...+....+... +.++.++.++|+|.++|.|+.|+.|++|
T Consensus 406 ------~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d---~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 406 ------IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTD---NEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred ------ecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEec---CCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 24578899999986 999999999999999997666555543 5679999999999999999999999999
Q ss_pred ECCCc-eeeEee-ecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 470 SHQSG-KLEHLM-KVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 470 d~~~~-~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
-+... ...... +.|..+|+.+.|++|++++.+-+.|-.|..|+|
T Consensus 475 ~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 475 RVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 98654 333333 334589999999999999999999999999986
No 124
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.8e-26 Score=211.73 Aligned_cols=290 Identities=20% Similarity=0.359 Sum_probs=230.3
Q ss_pred eeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEE-cCCCCEEEEEe
Q 010324 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF-SRDSEMLASGS 283 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~l~s~~ 283 (513)
..++. .|.+.|+.+....+|+.|+++|.|-+|+ +|+...+.. ....++..|.+.|.|+++ .++...+|+||
T Consensus 66 ~asme-~HsDWVNDiiL~~~~~tlIS~SsDtTVK-~W~~~~~~~------~c~stir~H~DYVkcla~~ak~~~lvaSgG 137 (735)
T KOG0308|consen 66 IASME-HHSDWVNDIILCGNGKTLISASSDTTVK-VWNAHKDNT------FCMSTIRTHKDYVKCLAYIAKNNELVASGG 137 (735)
T ss_pred hhhhh-hhHhHHhhHHhhcCCCceEEecCCceEE-EeecccCcc------hhHhhhhcccchheeeeecccCceeEEecC
Confidence 45555 8999999999999999999999999997 999887641 122345569999999999 88999999999
Q ss_pred CCCcEEEEEcCCcc--eeeec--------ccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccccccee
Q 010324 284 QDGKIKVWRIRSGQ--CLRRL--------ERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVN 353 (513)
Q Consensus 284 ~dg~i~vwd~~~~~--~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 353 (513)
-|+.|.+||+.++. .+.++ ..++..+|.+++.++.|..+++|+..+.+++||.++++.+..+++|...|.
T Consensus 138 LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr 217 (735)
T KOG0308|consen 138 LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR 217 (735)
T ss_pred CCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE
Confidence 99999999999872 22222 226778999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeE-E
Q 010324 354 DAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV-V 432 (513)
Q Consensus 354 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~ 432 (513)
++..++||..+++++.||+|++||+...+++.++. .|...+.++..+|.- ..+++|+.||.|+.-|++... .
T Consensus 218 ~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~------vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~ 290 (735)
T KOG0308|consen 218 VLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI------VHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKS 290 (735)
T ss_pred EEEEcCCCCeEeecCCCceEEeeeccccceeeeEE------eccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhh
Confidence 99999999999999999999999999999999876 566679999988765 899999999999999998632 2
Q ss_pred EEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceee-------E------------------eeecccCCe
Q 010324 433 KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE-------H------------------LMKVHEKDV 487 (513)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~-------~------------------~~~~h~~~v 487 (513)
..+.. ...++..+..+.+.+-+.+++.|+.|.-|...-...+ . .+.| ..++
T Consensus 291 tlick---~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G-g~ai 366 (735)
T KOG0308|consen 291 TLICK---EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG-GAAI 366 (735)
T ss_pred eEeec---CCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccC-chhh
Confidence 22222 1334556666655555678888999999965421111 0 0110 1123
Q ss_pred EEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 488 IGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 488 ~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
...+.-.|.++++|=...|.+.+||.
T Consensus 367 ~k~~mL~dkRhVlTkDa~gnv~lwDI 392 (735)
T KOG0308|consen 367 KKHAMLNDKRHVLTKDAKGNVALWDI 392 (735)
T ss_pred hhhhhhcCcceEeeecCCCCEEEEEe
Confidence 33344457789999999999999983
No 125
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=9.8e-25 Score=207.05 Aligned_cols=295 Identities=20% Similarity=0.321 Sum_probs=234.4
Q ss_pred ccccCcccceeeeeccc-cCceeEEEECCCCC-EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEc
Q 010324 196 VEDMYPTTLSHTIKFGT-KSHAECARFSPDGQ-FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS 273 (513)
Q Consensus 196 ~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~g~-~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 273 (513)
+.+..-.+...++ .| .++|+.++|..||+ .+|+|+..|.+. +||++..+.+.... ..|.+.|....|.
T Consensus 228 ifNlK~dkil~sF--k~d~g~VtslSFrtDG~p~las~~~~G~m~-~wDLe~kkl~~v~~-------nah~~sv~~~~fl 297 (910)
T KOG1539|consen 228 IFNLKFDKILMSF--KQDWGRVTSLSFRTDGNPLLASGRSNGDMA-FWDLEKKKLINVTR-------NAHYGSVTGATFL 297 (910)
T ss_pred EEEcccCcEEEEE--EccccceeEEEeccCCCeeEEeccCCceEE-EEEcCCCeeeeeee-------ccccCCcccceec
Confidence 3344444445554 45 49999999999997 567788889995 99999887765443 2378888888898
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCcce-----------------eeecc---------------------------------
Q 010324 274 RDSEMLASGSQDGKIKVWRIRSGQC-----------------LRRLE--------------------------------- 303 (513)
Q Consensus 274 ~~~~~l~s~~~dg~i~vwd~~~~~~-----------------~~~~~--------------------------------- 303 (513)
|....+++++.|+.+++|=.+++.- ++-+.
T Consensus 298 ~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~ 377 (910)
T KOG1539|consen 298 PGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLH 377 (910)
T ss_pred CCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccc
Confidence 8888888888888888774442211 00000
Q ss_pred -------------------------------------------------------------cc------cccCeEEEEEc
Q 010324 304 -------------------------------------------------------------RA------HSEGVTSLVFS 316 (513)
Q Consensus 304 -------------------------------------------------------------~~------~~~~v~~~~~~ 316 (513)
.. ....+++++.+
T Consensus 378 ~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs 457 (910)
T KOG1539|consen 378 NKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS 457 (910)
T ss_pred cccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe
Confidence 01 22568889999
Q ss_pred cCCCEEEEeeCCCcEEEEecCCCceeeEe---cccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCC
Q 010324 317 RDGSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPL 393 (513)
Q Consensus 317 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 393 (513)
+.|++.+.|+..|.|-+|++.+|-...++ ..|.++|++++...-++.+++++.+|.+++||.........+..
T Consensus 458 ~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l---- 533 (910)
T KOG1539|consen 458 FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL---- 533 (910)
T ss_pred ccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc----
Confidence 99999999999999999999999888888 57999999999999899999999999999999998876666543
Q ss_pred CCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 394 RGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 394 ~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
...+..+..+... ..++++..+-.|.++|.... .++.+.. |+..++.++|||||++|++++.|++|++||+.
T Consensus 534 ---~~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~kvvR~f~g---h~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 534 ---GSSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRKVVREFWG---HGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred ---CCCcceeeeeehh-hhhhhhcCceeEEEEEchhhhhhHHhhc---cccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 3456666666655 78899999999999999844 4444433 56789999999999999999999999999999
Q ss_pred CceeeEeeecccCCeEEEEEcCCCCEEEEEECC-CeEEecc
Q 010324 473 SGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED-CTMKLWK 512 (513)
Q Consensus 473 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-g~i~iWd 512 (513)
++.++-.+. -+.+++++.|+|+|.+|||+..| .-|++|-
T Consensus 607 t~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 607 TGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999988775 46789999999999999999988 5699983
No 126
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=190.40 Aligned_cols=246 Identities=17% Similarity=0.324 Sum_probs=211.0
Q ss_pred ccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEec
Q 010324 257 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 336 (513)
Q Consensus 257 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 336 (513)
.+.+.||.+.|+.++-......+.+++.|.+.+||.+++|.|+.++. +|.+.|+++.|++.+.++++++.|++-.||..
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 34667899999999998888899999999999999999999999997 99999999999999999999999999999962
Q ss_pred ------CC----------------------------------CceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEE
Q 010324 337 ------KS----------------------------------GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 376 (513)
Q Consensus 337 ------~~----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 376 (513)
.. ..++..+.+|.+.|.+..|-..|+.+++++.|.+-.+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 10 01456678899999999999999999999999999999
Q ss_pred eCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCE
Q 010324 377 DLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEW 456 (513)
Q Consensus 377 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 456 (513)
|+++++.+..+. +|+...+.++-+|.. .++++++.|.+.++||++ ..+........|...+++..|..+. .
T Consensus 300 DVEtge~v~~Lt------GHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFR-eaI~sV~VFQGHtdtVTS~vF~~dd-~ 370 (481)
T KOG0300|consen 300 DVETGEVVNILT------GHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFR-EAIQSVAVFQGHTDTVTSVVFNTDD-R 370 (481)
T ss_pred eeccCceecccc------CcchhccccccCCcc-eEEEEeccCceeEeccch-hhcceeeeecccccceeEEEEecCC-c
Confidence 999999887765 888899999999976 899999999999999999 3344444445567789999998765 5
Q ss_pred EEEEecCceEEEEECCCce-eeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 457 IYCVGEDRNLYCFSHQSGK-LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 457 l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+++|+.|.+|++||+++.+ ++.++. -+.+++.++.+..++.|+.--++..|++||.
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred eeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEec
Confidence 8899999999999998754 556665 4678999999988889988888889999983
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.7e-26 Score=212.17 Aligned_cols=286 Identities=16% Similarity=0.237 Sum_probs=217.0
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKVW 291 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~vw 291 (513)
.....+++..++-..++.++.. ..+ +|.+.............. .-..-...+..+.|.. +.++||+++..|.|.+|
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lk-lyai~~~~~~~~~~~~~k-~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLK-LYAINPNDFSEKCNHRFK-TKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred ccccceEeecCCcceeEEeccc-cee-eEeeCcccCCcceeeecc-cccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 4556777888888888888754 454 666654332221111000 0000123466778876 66799999999999999
Q ss_pred EcCC---cceeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEcc-CCCEEEE
Q 010324 292 RIRS---GQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN-DGSRVVT 366 (513)
Q Consensus 292 d~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 366 (513)
|+.. .+.+..+. .|...++++.|++ ...+|++|+.||+|++||++..+...++.+....|.++.|+| .+..+++
T Consensus 116 dlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s 194 (839)
T KOG0269|consen 116 DLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFAS 194 (839)
T ss_pred ecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEE
Confidence 9986 44555665 8999999999998 566889999999999999999999999998888999999999 6778999
Q ss_pred EeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEE
Q 010324 367 ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFV 446 (513)
Q Consensus 367 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 446 (513)
+.+.|.+++||++.... ....+.+|.++|.++.|+|+ ..++++|+.|+.|++|+..+.......... ...++.
T Consensus 195 ~~dsG~lqlWDlRqp~r-----~~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~ 267 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDR-----CEKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVG 267 (839)
T ss_pred ecCCceEEEeeccCchh-----HHHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCccceeEEe-ecceee
Confidence 99999999999996431 12234589999999999995 599999999999999999843322222111 245688
Q ss_pred EEEECCCCCE-EEEEe--cCceEEEEECCCce-eeEeeecccCCeEEEEEcC-CCCEEEEEECCCeEE
Q 010324 447 AACVSPKGEW-IYCVG--EDRNLYCFSHQSGK-LEHLMKVHEKDVIGVTHHP-HRNLLATYGEDCTMK 509 (513)
Q Consensus 447 ~~~~s~~~~~-l~~g~--~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~ 509 (513)
++.|-|...+ |++++ .|-.|+|||++..- +..++..|+..++.++|.. |...+.+++.||+|.
T Consensus 268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 9999998765 45554 57889999997653 4577888999999999976 567899999999874
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=9.5e-24 Score=189.44 Aligned_cols=299 Identities=16% Similarity=0.291 Sum_probs=228.0
Q ss_pred cccccccCcccceeeeeccccCceeEEEECC--CCCEEEEE--ecCCeEEEEEeccccccccccccccccccccCCccEE
Q 010324 193 KQDVEDMYPTTLSHTIKFGTKSHAECARFSP--DGQFLVSC--SFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVL 268 (513)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~la~g--~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~ 268 (513)
+..+|+...-...+.+- .....|.|++||+ .|.+|+.- +.+..+. +||...+........ .+..|.
T Consensus 135 hvriWdsv~L~TL~V~g-~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lS-VWdWqk~~~~~~vk~--------sne~v~ 204 (626)
T KOG2106|consen 135 HVRIWDSVTLSTLHVIG-FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLS-VWDWQKKAKLGPVKT--------SNEVVF 204 (626)
T ss_pred eeeecccccceeeeeec-cccccceeeeecccCCCceEEEecCCCccccc-hhhchhhhccCccee--------ccceEE
Confidence 34456666666666665 4556799999998 45566554 3455675 999998776654443 567889
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee---cccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe
Q 010324 269 CIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRR---LERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF 345 (513)
Q Consensus 269 ~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 345 (513)
...|+|.+..++.....|.+.+|+.+.+...++ +.......|.|++|.++|. +++|..+|.|.||+..+.+..+..
T Consensus 205 ~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~ 283 (626)
T KOG2106|consen 205 LATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQV 283 (626)
T ss_pred EEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEe
Confidence 999999666555555678999999988866544 3334457899999999885 789999999999999888887777
Q ss_pred cccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCC---------------------------------
Q 010324 346 RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPP--------------------------------- 392 (513)
Q Consensus 346 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------------------------------- 392 (513)
..|.+.|.+++...+|.. ++|+.|..|..|| ..-+..+..+.+..
T Consensus 284 ~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 284 HAHDGGVFSLCMLRDGTL-LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred eecCCceEEEEEecCccE-eecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 799999999999999874 5599999999999 32222222222111
Q ss_pred --CCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 393 --LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 393 --~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
..+|......++.+|.. +.+++++.|+.+++|+ ..+....... ..+..++.|+|.| .++.|+..|...+.|
T Consensus 362 ~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~-~~k~~wt~~~----~d~~~~~~fhpsg-~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN-DHKLEWTKII----EDPAECADFHPSG-VVAVGTATGRWFVLD 434 (626)
T ss_pred EEEEecccceeeEEcCCCh-hheeeccCcceEEEcc-CCceeEEEEe----cCceeEeeccCcc-eEEEeeccceEEEEe
Confidence 12444566778888877 8899999999999999 4444333332 3457899999999 999999999999999
Q ss_pred CCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 471 HQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 471 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.++...+..-.. ..++++++|+|+|.+||.|+.|+.|+||.
T Consensus 435 ~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 435 TETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred cccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 999666655544 88999999999999999999999999984
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=2e-23 Score=194.71 Aligned_cols=280 Identities=17% Similarity=0.196 Sum_probs=202.4
Q ss_pred cccccCcccceeeeeccccCceeEEEECCCCCEE-EEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEc
Q 010324 195 DVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFL-VSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS 273 (513)
Q Consensus 195 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-a~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 273 (513)
..++.........+. ++ ..+.+++|+|+|+.+ ++++.++.++ +||..+++....+. .+ ..+..++|+
T Consensus 14 ~~~d~~t~~~~~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~~~v~-~~d~~~~~~~~~~~--------~~-~~~~~~~~~ 81 (300)
T TIGR03866 14 SVIDTATLEVTRTFP-VG-QRPRGITLSKDGKLLYVCASDSDTIQ-VIDLATGEVIGTLP--------SG-PDPELFALH 81 (300)
T ss_pred EEEECCCCceEEEEE-CC-CCCCceEECCCCCEEEEEECCCCeEE-EEECCCCcEEEecc--------CC-CCccEEEEC
Confidence 344444445555554 33 346789999999977 5677889996 99998876554332 12 235678999
Q ss_pred CCCCEEEEE-eCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCC-cEEEEecCCCceeeEecccccc
Q 010324 274 RDSEMLASG-SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS-TARIHGLKSGKLLKEFRGHSSY 351 (513)
Q Consensus 274 ~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~ 351 (513)
|+++.++++ +.++.+++||+.+++.+..+. ....+.+++|+|+|..+++++.++ .+.+||.++++....... ...
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~ 158 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQR 158 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCC
Confidence 999977655 568999999999888777664 334568899999999999988775 567789988877655432 334
Q ss_pred eeEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeecCCCC-CCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC
Q 010324 352 VNDAIFTNDGSRVVTAS-SDCTVKVWDLKSTDCLQTFKPPPP-LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG 429 (513)
Q Consensus 352 v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 429 (513)
+.+++|+|+++++++++ .++.|++||+++++....+..... ..........+.++|++...+++...++.+.+||...
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 67899999999886554 689999999999887665542211 0011223456888998855455566677899999984
Q ss_pred eEE-EEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeecccCCeEEEEEcC
Q 010324 430 QVV-KSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494 (513)
Q Consensus 430 ~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p 494 (513)
..+ ..... ...+.+++|+|+|++|++++ .+|.|.+||+.+++++..+... ...+.++++|
T Consensus 239 ~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 239 YEVLDYLLV----GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CcEEEEEEe----CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 433 33322 23577999999999998874 6899999999999999988764 5668888875
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.1e-26 Score=214.05 Aligned_cols=244 Identities=20% Similarity=0.332 Sum_probs=195.3
Q ss_pred eeEEEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 010324 216 AECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKVWRI 293 (513)
Q Consensus 216 v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~vwd~ 293 (513)
+..+.|+. +.++|||++..|.|. +||+...... .....|..|...++++.|++ ...+|++|+.||+|++||+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~-vWdlnk~~rn-----k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVIS-VWDLNKSIRN-----KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL 163 (839)
T ss_pred hhhcccccchhhhheeecCCCcEE-EEecCccccc-----hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence 34477775 678999999999995 9999863111 11234556999999999999 5678999999999999999
Q ss_pred CCcceeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCC-ceeeEecccccceeEEEEccCCCEEEEEeCCC
Q 010324 294 RSGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC 371 (513)
Q Consensus 294 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 371 (513)
+..+...++. +....|..+.|+| .+.+|+++...|.+.+||++.. ++...+.+|.++|.|+.|+|++.+||||+.|+
T Consensus 164 R~~~S~~t~~-~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK 242 (839)
T KOG0269|consen 164 RSKKSKSTFR-SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK 242 (839)
T ss_pred eccccccccc-ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc
Confidence 9988888886 6788999999999 6788999999999999999865 45678889999999999999999999999999
Q ss_pred cEEEEeCCCCce--eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC--CCcEEEEEccCeEEEEeecCccCCCcEEE
Q 010324 372 TVKVWDLKSTDC--LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK--TSSIYIMTLQGQVVKSFSSGKREGGDFVA 447 (513)
Q Consensus 372 ~i~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 447 (513)
.|+|||+.+.+. ..++. ...++..+.|-|..+..|++++. |..|++||++..-+.... ...|...++.
T Consensus 243 ~vkiWd~t~~~~~~~~tIn-------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t-~~eH~~~vt~ 314 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTIN-------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT-FLEHTDSVTG 314 (839)
T ss_pred cEEEEeccCCCccceeEEe-------ecceeeeeeeccCccchhhhhhccccceEEEEeecccccccee-eeccCccccc
Confidence 999999986543 22222 34689999999999888998874 678999999854332211 1235666888
Q ss_pred EEE-CCCCCEEEEEecCceEEEEECCCc
Q 010324 448 ACV-SPKGEWIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 448 ~~~-s~~~~~l~~g~~dg~i~iwd~~~~ 474 (513)
++| +.|...+.+++.||.|..-.++++
T Consensus 315 i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 315 IAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccCCCceeeEeecCccHHHHhhhhcc
Confidence 999 446678889999998877666554
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.2e-24 Score=201.20 Aligned_cols=286 Identities=22% Similarity=0.264 Sum_probs=223.8
Q ss_pred eeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC-----------CCEEEEEeC
Q 010324 216 AECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-----------SEMLASGSQ 284 (513)
Q Consensus 216 v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----------~~~l~s~~~ 284 (513)
..++.|++....|.+--.|..+ +|||+.+-...... ..+.-|...|+++.--|. ...+++|+.
T Consensus 327 ~IA~~Fdet~~klscVYndhSl-YvWDvrD~~kvgk~-----~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs 400 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSL-YVWDVRDVNKVGKC-----SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSS 400 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceE-EEEeccccccccce-----eeeeeccceeeeeccccccccCcccccCCccceeEecC
Confidence 3467899999999999999999 69999875543322 123338888888876551 236899999
Q ss_pred CCcEEEEEcCCcceeeecc------------------------------------cccccCeEEEEEccCCCEEEEeeCC
Q 010324 285 DGKIKVWRIRSGQCLRRLE------------------------------------RAHSEGVTSLVFSRDGSQILSTSFD 328 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~------------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d 328 (513)
|++|++||+..+..-..+. ......+.+++.+|+|++|++|..-
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence 9999999987522110000 1234569999999999999999999
Q ss_pred CcEEEEecCCCceeeEecccccceeEEEEcc---CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEe
Q 010324 329 STARIHGLKSGKLLKEFRGHSSYVNDAIFTN---DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHL 405 (513)
Q Consensus 329 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
|++++|++.+-+....+..|...|.|+.|+. ..++|++++.|.-|++||+... +.....+.+|...|+++.|
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-----y~l~qtld~HSssITsvKF 555 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-----YDLVQTLDGHSSSITSVKF 555 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-----cchhhhhcccccceeEEEE
Confidence 9999999999999999999999999999985 3468999999999999998743 2333344588999999999
Q ss_pred cCCC-CCeEEEEcCCCcEEEEEccC-eEEEEeec--CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeee
Q 010324 406 FPKN-PDHIVVCNKTSSIYIMTLQG-QVVKSFSS--GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK 481 (513)
Q Consensus 406 ~~~~-~~~l~~~~~~~~i~i~d~~~-~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 481 (513)
...+ ...+++++.|..|.+-..+. .....+.. .......+..+++.|..+++++++.|..|+|||+.+|+..+.++
T Consensus 556 a~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK 635 (1080)
T KOG1408|consen 556 ACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK 635 (1080)
T ss_pred eecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeec
Confidence 8765 35688888888877655541 11111211 11234567899999999999999999999999999999999987
Q ss_pred c---ccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 482 V---HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 482 ~---h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+ |.+....+...|.|.++|+.+.|.++.++|
T Consensus 636 gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 636 GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred ccccCCCceEEEEECCCccEEEEeecCCceEEEE
Confidence 5 667889999999999999999999999987
No 132
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.6e-24 Score=179.56 Aligned_cols=258 Identities=16% Similarity=0.237 Sum_probs=197.5
Q ss_pred eeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC--CCCEEEEEe
Q 010324 206 HTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGS 283 (513)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~ 283 (513)
..+..+|.+-|.|+.|.+.|+.+|+|+.|++++ |||..+..... .....+..|.+.|..+.|.+ -|+.+|+++
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vk-I~d~~~~s~~W----~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVK-IWDSTSDSGTW----SCTSSWRAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred cccccCCcceeeeeeecccCceeeeccCCCcEE-EEeccCCCCce----EEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence 345569999999999999999999999999998 99976554333 23345667999999999987 689999999
Q ss_pred CCCcEEEEEcCC---------cceeeecccccccCeEEEEEcc--CCCEEEEeeCCCcEEEEecCCCc------eeeEec
Q 010324 284 QDGKIKVWRIRS---------GQCLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIHGLKSGK------LLKEFR 346 (513)
Q Consensus 284 ~dg~i~vwd~~~---------~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~ 346 (513)
.|+++.||.-.. .....++. ...+.|+.+.|.| -|-.+++++.||.++||+.-+.- ....++
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~ 159 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ 159 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence 999999997421 11223333 5678899999999 57789999999999999865432 222333
Q ss_pred -------ccccceeEEEEccC---CCEEEEEeCC-----CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCC-
Q 010324 347 -------GHSSYVNDAIFTND---GSRVVTASSD-----CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP- 410 (513)
Q Consensus 347 -------~~~~~v~~~~~~~~---~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 410 (513)
.+..+..|+.|+|. ..+|++|+.+ +.+.||....+. +.+.....+.++..+|+.++|.|.-+
T Consensus 160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc--ceeeeehhcCCCCCcceeeeeccccCC
Confidence 35567889999973 4578887765 478888765433 22222333448899999999999743
Q ss_pred --CeEEEEcCCCcEEEEEccCe------------------EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 411 --DHIVVCNKTSSIYIMTLQGQ------------------VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 411 --~~l~~~~~~~~i~i~d~~~~------------------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
.++++++.|| |+||.+... .+..+.....|++.+..+.|.-.|..|++.+.||.|++|.
T Consensus 238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 238 SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 4789999999 999998731 2344555567888999999999999999999999999997
Q ss_pred CC
Q 010324 471 HQ 472 (513)
Q Consensus 471 ~~ 472 (513)
..
T Consensus 317 an 318 (361)
T KOG2445|consen 317 AN 318 (361)
T ss_pred hh
Confidence 64
No 133
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1e-24 Score=193.71 Aligned_cols=220 Identities=23% Similarity=0.339 Sum_probs=178.8
Q ss_pred eeeccccCceeEEEECCC-CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEEEeC
Q 010324 207 TIKFGTKSHAECARFSPD-GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQ 284 (513)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~-g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~ 284 (513)
++. ||...-..++|++. .-.|++|+.|++|. +||+...... .....+...+.+|...|..++|++ +...+++++.
T Consensus 172 ~L~-gH~~eg~glsWn~~~~g~Lls~~~d~~i~-lwdi~~~~~~-~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 172 RLK-GHEKEGYGLSWNRQQEGTLLSGSDDHTIC-LWDINAESKE-DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred EEE-eecccccccccccccceeEeeccCCCcEE-EEeccccccC-CccccceEEeecCCcceehhhccccchhhheeecC
Confidence 454 88888888999994 45899999999996 9999865543 122345567889999999999999 6678999999
Q ss_pred CCcEEEEEcCC--cceeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCC-ceeeEecccccceeEEEEccC
Q 010324 285 DGKIKVWRIRS--GQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTND 360 (513)
Q Consensus 285 dg~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~ 360 (513)
|+.+.|||+++ .++.... .+|..+|.|++|+| ++..||+|+.|++|.+||+|+- +++.++.+|...|.++.|+|.
T Consensus 249 d~~L~iwD~R~~~~~~~~~~-~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSV-KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred CCeEEEEEcCCCCCCCcccc-cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence 99999999995 4444444 48999999999999 6778899999999999999875 467889999999999999995
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCceeEee-----cCC---CCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe
Q 010324 361 -GSRVVTASSDCTVKVWDLKSTDCLQTF-----KPP---PPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ 430 (513)
Q Consensus 361 -~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 430 (513)
...|++++.|+.+.+||+..-...+.. .++ ..-.+|...|..+.|+|..+-.+++.+.|+.+.||.....
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 457889999999999999754332210 001 1124788999999999999999999999999999998743
No 134
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.93 E-value=3.6e-24 Score=198.31 Aligned_cols=274 Identities=20% Similarity=0.314 Sum_probs=220.6
Q ss_pred ceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010324 215 HAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR 294 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~ 294 (513)
.|..++|-|||..|+.+..+. + ++||.+.|.... ++++|.+.|+|++|+.||+.+|+|+.|..|.+|+-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-l-liyD~ndG~llq--------tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-L-LVYDTSDGTLLQ--------PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred chheeEECCCCceEEEecCCE-E-EEEeCCCccccc--------ccccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 789999999999999887665 5 499999988765 455799999999999999999999999999999844
Q ss_pred CcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEE
Q 010324 295 SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374 (513)
Q Consensus 295 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 374 (513)
- ...+...|+..|.|+.|+|-...|++++- ...-+|...... +.+.+ ....+.+.+|..||.+++.|-.+|+|.
T Consensus 84 l---EG~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 84 L---EGILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGTIS 157 (1081)
T ss_pred c---cceeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCceEE
Confidence 2 22333469999999999999888998874 345688764333 22222 345789999999999999999999999
Q ss_pred EEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC----CCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEE
Q 010324 375 VWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN----PDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACV 450 (513)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 450 (513)
+-+- +++....+..+. +...+|.+++|+|.. ...+++...+.++.++.++|+.+..-.. -+....++.+
T Consensus 158 iRNk-~gEek~~I~Rpg---g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~---L~FdP~CisY 230 (1081)
T KOG1538|consen 158 IRNK-NGEEKVKIERPG---GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRA---LNFDPCCISY 230 (1081)
T ss_pred eecC-CCCcceEEeCCC---CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccccc---CCCCchhhee
Confidence 9864 445444444332 567899999999964 3578888899999999999877653332 2334668899
Q ss_pred CCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 451 SPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 451 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.++|.|+..|+.|+.+.+|. +.|-.+.++...+..|+.++.+|+++.++.|+.||+|--|+
T Consensus 231 f~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred ccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 99999999999999999998 45777778877788999999999999999999999997664
No 135
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=3.8e-24 Score=199.12 Aligned_cols=303 Identities=15% Similarity=0.208 Sum_probs=231.8
Q ss_pred eeeeeccccCceeEEEECCCCC---EEEEEecCCeEEEEEecccccccc---------------------c--ccccccc
Q 010324 205 SHTIKFGTKSHAECARFSPDGQ---FLVSCSFDGFIEVVWDYLSGKLKK---------------------D--LQYQADE 258 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~---~la~g~~dg~i~~iwd~~~~~~~~---------------------~--~~~~~~~ 258 (513)
...+. ||.+.|.+++|...+. +||++|.|..|| ||.+.-+.... . +......
T Consensus 184 v~el~-GH~DWIrsl~f~~~~~~~~~laS~SQD~yIR-iW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 184 VAELE-GHTDWIRSLAFARLGGDDLLLASSSQDRYIR-IWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred EEEee-ccchhhhhhhhhccCCCcEEEEecCCceEEE-EEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 34444 9999999999987544 899999999999 99875433111 0 1111223
Q ss_pred ccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc--eeeecc----cccccCeEEEEEccCCCEEEEeeCCCcEE
Q 010324 259 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ--CLRRLE----RAHSEGVTSLVFSRDGSQILSTSFDSTAR 332 (513)
Q Consensus 259 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 332 (513)
.+.||.+.|.++.|+|.+..|++++.|.++.+|...+.. -+.... .+.........|+|+++.+++-+..|..+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 567999999999999999999999999999999876542 111111 13345688999999999999999999999
Q ss_pred EEecCCC---ceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC
Q 010324 333 IHGLKSG---KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN 409 (513)
Q Consensus 333 i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (513)
+|..... .....+.+|...|++++|+|.|.+|++++.|.+-|+|-.- |+.. .+......+.|....+++++.+.
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~-~wHEiaRPQiHGyDl~c~~~vn~- 418 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQ-EWHEIARPQIHGYDLTCLSFVNE- 418 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-cccc-ceeeecccccccccceeeehccC-
Confidence 9983332 2344567899999999999999999999999999999755 2221 13333344578889999999886
Q ss_pred CCeEEEEcCCCcEEEEEccCe-----------E-------------------EEEee-----------------------
Q 010324 410 PDHIVVCNKTSSIYIMTLQGQ-----------V-------------------VKSFS----------------------- 436 (513)
Q Consensus 410 ~~~l~~~~~~~~i~i~d~~~~-----------~-------------------~~~~~----------------------- 436 (513)
+..+++|.....+++|+.... . .+.+.
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 377888888888888764210 0 00000
Q ss_pred ---------------------cCccCCCcEEEEEECCCCCEEEEEecC-----ceEEEEECCCceeeEeeecccCCeEEE
Q 010324 437 ---------------------SGKREGGDFVAACVSPKGEWIYCVGED-----RNLYCFSHQSGKLEHLMKVHEKDVIGV 490 (513)
Q Consensus 437 ---------------------~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~~ 490 (513)
....|+..+.+++.+|+|+++|+++.. ..|++|+..+-..+..+.+|+-.|+.+
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 001356788999999999999999843 369999999998888999999999999
Q ss_pred EEcCCCCEEEEEECCCeEEecc
Q 010324 491 THHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 491 ~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+||||+++|++.|.|.++.+|.
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred EECCCCcEEEEeecCceEEeee
Confidence 9999999999999999999996
No 136
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=191.69 Aligned_cols=246 Identities=18% Similarity=0.276 Sum_probs=190.0
Q ss_pred CCCEEEEEecCCeEEEEEecccccccc-cccc------------ccccccccCCccEEEEEEcCC-CCEEEEEeCCCcEE
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKK-DLQY------------QADETFMMHDETVLCIEFSRD-SEMLASGSQDGKIK 289 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~-~~~~------------~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~ 289 (513)
-|+|+|.|+.|..|. |||+.-...+. .+.. .....-.+|+..|.+++|+.+ .+.||+||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~Ie-IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIE-IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeE-EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 378999999999996 99986322111 1100 011123469999999999984 45899999999999
Q ss_pred EEEcCCcceeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCC-CEEEEE
Q 010324 290 VWRIRSGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG-SRVVTA 367 (513)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 367 (513)
+||+.+|++..++. .|...|.++.|+| ....|++|+.|++|.+.|.+........-...+.|-.++|.|.. ..++++
T Consensus 270 lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 99999999999997 7999999999999 56789999999999999998533322222245678999999854 467888
Q ss_pred eCCCcEEEEeCCCC-ceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEE
Q 010324 368 SSDCTVKVWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFV 446 (513)
Q Consensus 368 ~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 446 (513)
+.||+++-+|+|+. +++.++. +|..+|.++++++..+.++++++.++.+.+|++.+...+....+...-+...
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~ 422 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLK------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLH 422 (463)
T ss_pred cCCceEEeeecCCCCCceeEEE------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccccccee
Confidence 89999999999986 6666665 7899999999999999999999999999999998544433333332233455
Q ss_pred EEEECCCCC-EEEEEecCceEEEEECCCceee
Q 010324 447 AACVSPKGE-WIYCVGEDRNLYCFSHQSGKLE 477 (513)
Q Consensus 447 ~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~ 477 (513)
|+++.|+-. +++.|+..+.+++||+.+...+
T Consensus 423 c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 423 CFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecccCCCcceEEEecCccceEEEeecccChhH
Confidence 667777654 5677888889999999876544
No 137
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=178.65 Aligned_cols=281 Identities=19% Similarity=0.292 Sum_probs=211.9
Q ss_pred eEEEECCCCCEEEEEecCCeEEEEEeccccccccc----ccccccccc-ccCCccEEEEEEc-------CCCCEEEEEeC
Q 010324 217 ECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKD----LQYQADETF-MMHDETVLCIEFS-------RDSEMLASGSQ 284 (513)
Q Consensus 217 ~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~----~~~~~~~~~-~~h~~~v~~l~~~-------~~~~~l~s~~~ 284 (513)
..+.|||||..|.+-+.|..++ +|++...-.... ...+....+ ......|...+|- |+..++++.+.
T Consensus 53 kgckWSPDGSciL~~sedn~l~-~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLN-CWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred ccceeCCCCceEEeecccCeee-EEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4578999999999999999998 999753221111 111110011 1134567888885 57789999999
Q ss_pred CCcEEEEEcCCcceeeeccc-ccc---cCeEEEEEccCCCEEEEeeCCCcEEEEec-CCCceeeEe-------cccccce
Q 010324 285 DGKIKVWRIRSGQCLRRLER-AHS---EGVTSLVFSRDGSQILSTSFDSTARIHGL-KSGKLLKEF-------RGHSSYV 352 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~-~~~---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~-------~~~~~~v 352 (513)
+.-|.+||.-+|+....+.. .|. ....+++|+|||.+|++|. ...|+++|+ +.|...... .+..+-+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999998776641 122 3457899999999998876 789999999 555422111 1336779
Q ss_pred eEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--C
Q 010324 353 NDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--G 429 (513)
Q Consensus 353 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~ 429 (513)
.+++|+| +.+.+++++...++-||.-..+.+...+. +|.+.|+.+.|.+++..++.-+-.+..|..||++ .
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg------gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG------GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeec------ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 9999999 45589999998888898877777776654 7889999999999996555555678899999998 3
Q ss_pred eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC-ceeeEeeecccCCeEEEEEcCCCCEEEEEECC
Q 010324 430 QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS-GKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 505 (513)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d 505 (513)
..+..+..+......-.-....|+|++|++|+.||.|++||.+. +..+..+..|...|+.++++|--+++|+++..
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 44444444333233344556689999999999999999999988 77788888999999999999998888888743
No 138
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=1.6e-23 Score=178.31 Aligned_cols=305 Identities=19% Similarity=0.270 Sum_probs=224.3
Q ss_pred cCcccceeeeeccccCceeEEEECC-----CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEc
Q 010324 199 MYPTTLSHTIKFGTKSHAECARFSP-----DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS 273 (513)
Q Consensus 199 ~~~~~~~~~~~~~h~~~v~~~~~s~-----~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 273 (513)
..+......++.+|+.+|..++|++ .-..+|+.+.+. +. +|.......+..++.-. -..|......++|+
T Consensus 24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~r-vt-iy~c~~d~~ir~lq~y~---D~d~~Esfytcsw~ 98 (385)
T KOG1034|consen 24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNR-VT-IYECPGDGGIRLLQSYA---DEDHDESFYTCSWS 98 (385)
T ss_pred ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCCcE-EE-EEEECCccceeeeeecc---CCCCCcceEEEEEE
Confidence 4556667777889999999999985 234667766554 53 88876443222222111 11377888889997
Q ss_pred CC----CCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccC-CCEEEEeeCCCcEEEEecCCCceeeEec--
Q 010324 274 RD----SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEFR-- 346 (513)
Q Consensus 274 ~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-- 346 (513)
-+ ..++|.|+.-|.|+|.|+.++++...+. +|...|+.+.++|+ .++++++|.|..|++|++++..++..+-
T Consensus 99 yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 99 YDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred ecCCCCCeeEEeecceeEEEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence 63 4589999999999999999999998887 99999999999995 4688999999999999999999988774
Q ss_pred -ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeec------CC----------------CCCCCCCceeeEE
Q 010324 347 -GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK------PP----------------PPLRGGDASVNSV 403 (513)
Q Consensus 347 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~----------------~~~~~~~~~v~~~ 403 (513)
+|.+.|.++.|+++|.++++++.|.+|++|++...+....++ +. .....|...|.++
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv 257 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV 257 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHH
Confidence 689999999999999999999999999999998433211111 00 0112344455555
Q ss_pred EecCCCCCeEEEEcCCCcEEEEEcc--CeEEEEe----------ecCccCCCc--EEEEEECCCCCEEEEEecCceEEEE
Q 010324 404 HLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSF----------SSGKREGGD--FVAACVSPKGEWIYCVGEDRNLYCF 469 (513)
Q Consensus 404 ~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~----------~~~~~~~~~--~~~~~~s~~~~~l~~g~~dg~i~iw 469 (513)
.|.- +++++-+.++.|..|... ++.+... ....-.... ....++.|-++.||.|...|.|++|
T Consensus 258 rw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 258 RWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred HHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 5543 788888999999999872 2211111 111111222 3455678889999999999999999
Q ss_pred ECCCceee--Eeeec--ccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 470 SHQSGKLE--HLMKV--HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 470 d~~~~~~~--~~~~~--h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
|++...+. .++.. ....|...+|+.|+.+|+...+|++|--||
T Consensus 335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 99887653 12221 235799999999999999999999999987
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.5e-25 Score=209.31 Aligned_cols=255 Identities=21% Similarity=0.389 Sum_probs=222.3
Q ss_pred CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeccc
Q 010324 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER 304 (513)
Q Consensus 225 g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 304 (513)
+.+++.+..+-.++ +|+... +..|...|.|+..-..++.+++|+.|-.+-+|.+.....+..+.
T Consensus 4 ~~~~m~~~~~t~Lr-~~~~~~--------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~- 67 (825)
T KOG0267|consen 4 MEFLMKTKRATKLR-VWDTRE--------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT- 67 (825)
T ss_pred ccccceeeeeeccc-cccchh--------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheee-
Confidence 34445555555666 777543 22388899999987788999999999999999988777777776
Q ss_pred ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 010324 305 AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCL 384 (513)
Q Consensus 305 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 384 (513)
+|..+|.++.|+++...|++|+.+|+|++||+..++.++++.+|...+.++.|+|-+.+.+.|+.|+.+.+||.+...+.
T Consensus 68 ~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~ 147 (825)
T KOG0267|consen 68 GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS 147 (825)
T ss_pred ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC
Q 010324 385 QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED 463 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 463 (513)
..+. +|...+..+.+.|++ .+++.++.|..+++||.. |+....|.. +.+.+..+.++|..-.++.|+.|
T Consensus 148 ~~~~------s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~~ef~~---~e~~v~sle~hp~e~Lla~Gs~d 217 (825)
T KOG0267|consen 148 HTYK------SHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLSKEFKS---HEGKVQSLEFHPLEVLLAPGSSD 217 (825)
T ss_pred eeec------CCcceeEEEeecCCC-ceeeccCCcceeeeeccccccccccccc---ccccccccccCchhhhhccCCCC
Confidence 8876 577789999999998 899999999999999997 666666654 45668888899999999999999
Q ss_pred ceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECC
Q 010324 464 RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 505 (513)
Q Consensus 464 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d 505 (513)
++|++||+++.+.+.........|.+.+|+|++..+++|..+
T Consensus 218 ~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 218 RTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 999999999999988888888899999999999988888654
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.4e-23 Score=198.90 Aligned_cols=242 Identities=18% Similarity=0.270 Sum_probs=202.5
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCc-ceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc
Q 010324 262 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG-QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK 340 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 340 (513)
.|...-+.++|.|+|.+|++++.||.|++|+..+. +....+. .+...|.+++.. +.+|++|+.+++|.+|.+.+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-ISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-ccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 48889999999999999999999999999997766 4344443 367777777764 5699999999999999998887
Q ss_pred eeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC
Q 010324 341 LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS 420 (513)
Q Consensus 341 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 420 (513)
.-.-+....-++++++++.+|++++.|+.|-.|++-++........+. +|+.+|.++.++|.+ .++++.+.||
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr------gh~apVl~l~~~p~~-~fLAvss~dG 160 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR------GHDAPVLQLSYDPKG-NFLAVSSCDG 160 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec------ccCCceeeeeEcCCC-CEEEEEecCc
Confidence 665555666789999999999999999999999999998887766665 789999999999998 9999999999
Q ss_pred cEEEEEccCeEEEEe-ecCcc-----CCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeec--ccCCeEEEEE
Q 010324 421 SIYIMTLQGQVVKSF-SSGKR-----EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV--HEKDVIGVTH 492 (513)
Q Consensus 421 ~i~i~d~~~~~~~~~-~~~~~-----~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~ 492 (513)
.|++|++....+... ..... ....+..++|+|+|..+++.+.|+.|.+|+..+......+.. +...+.+++|
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence 999999985433222 21111 134456899999998899999999999999999988877764 3445999999
Q ss_pred cCCCCEEEEEECCCeEEeccC
Q 010324 493 HPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 493 ~p~~~~l~s~~~dg~i~iWdp 513 (513)
+|.|.+||+++.||.|.|||.
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred cCCCcEEeeeccCCcEEEEec
Confidence 999999999999999999983
No 141
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2.6e-23 Score=193.68 Aligned_cols=232 Identities=25% Similarity=0.384 Sum_probs=193.9
Q ss_pred cccCceeE-EEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcE
Q 010324 211 GTKSHAEC-ARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKI 288 (513)
Q Consensus 211 ~h~~~v~~-~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 288 (513)
+|.+-|.+ ++|-+ ++-.+++|+.|+.+ ++|........ ..+.||...|.|++...++. +++||.|.++
T Consensus 55 ~~~g~i~~~i~y~e~~~~~l~~g~~D~~i-~v~~~~~~~P~--------~~LkgH~snVC~ls~~~~~~-~iSgSWD~Ta 124 (745)
T KOG0301|consen 55 GPKGFIANSICYAESDKGRLVVGGMDTTI-IVFKLSQAEPL--------YTLKGHKSNVCSLSIGEDGT-LISGSWDSTA 124 (745)
T ss_pred cCcceeeccceeccccCcceEeecccceE-EEEecCCCCch--------hhhhccccceeeeecCCcCc-eEecccccce
Confidence 78888887 88886 55569999999999 59998876544 46678999999999888887 9999999999
Q ss_pred EEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEe
Q 010324 289 KVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS 368 (513)
Q Consensus 289 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 368 (513)
++|.. +++...+. +|...|++++..|++ .+++|+.|.+|++|. .++.++++.+|...|+.+++-+++ .+++++
T Consensus 125 kvW~~--~~l~~~l~-gH~asVWAv~~l~e~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~-~flScs 197 (745)
T KOG0301|consen 125 KVWRI--GELVYSLQ-GHTASVWAVASLPEN-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCS 197 (745)
T ss_pred EEecc--hhhhcccC-CcchheeeeeecCCC-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCC-CeEeec
Confidence 99975 45555665 999999999999988 899999999999997 588999999999999999999874 589999
Q ss_pred CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEE
Q 010324 369 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAA 448 (513)
Q Consensus 369 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 448 (513)
.||.|+.|++ +++++..+. +|..-+.++....++ ..+++++.|+++++|+.. .....+.. ....+.++
T Consensus 198 NDg~Ir~w~~-~ge~l~~~~------ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~-e~~q~I~l---PttsiWsa 265 (745)
T KOG0301|consen 198 NDGSIRLWDL-DGEVLLEMH------GHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD-ECVQVITL---PTTSIWSA 265 (745)
T ss_pred CCceEEEEec-cCceeeeee------ccceEEEEEEecCCC-CeEEEecCCceEEEeecC-ceEEEEec---CccceEEE
Confidence 9999999999 677777765 788899999966655 899999999999999988 22333322 23457788
Q ss_pred EECCCCCEEEEEecCceEEEEECC
Q 010324 449 CVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 449 ~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
++-++|. +++|++||.||||...
T Consensus 266 ~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 266 KVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeeCCC-EEEeccCceEEEEEec
Confidence 8877776 6778889999999865
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=4.1e-25 Score=206.39 Aligned_cols=235 Identities=23% Similarity=0.375 Sum_probs=207.1
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
.|...|.|+..-..++.+++|+.|..+. +|.+.....+. .+.+|..+|.|+.|+++..+|++|+.+|+|++
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~-L~~i~kp~~i~--------S~~~hespIeSl~f~~~E~LlaagsasgtiK~ 96 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVN-LWAIGKPNAIT--------SLTGHESPIESLTFDTSERLLAAGSASGTIKV 96 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeec-cccccCCchhh--------eeeccCCcceeeecCcchhhhcccccCCceee
Confidence 6888899998877899999999999997 99876543332 36779999999999999999999999999999
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCC
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 370 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 370 (513)
||++.++.++++. +|...+.++.|+|-+.+++.|+.|+.+++||++...+.+.+.+|...|..+.|+|+|++++.+++|
T Consensus 97 wDleeAk~vrtLt-gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed 175 (825)
T KOG0267|consen 97 WDLEEAKIVRTLT-GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGED 175 (825)
T ss_pred eehhhhhhhhhhh-ccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCc
Confidence 9999999999887 999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEE
Q 010324 371 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACV 450 (513)
Q Consensus 371 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 450 (513)
..+++||...|+....|+ +|.+.+.++.++|.. .++..|+.|+.+++||++.-.+.. ........+.+..|
T Consensus 176 ~tvki~d~~agk~~~ef~------~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~--s~~~~~~~v~~~~f 246 (825)
T KOG0267|consen 176 NTVKIWDLTAGKLSKEFK------SHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVIS--SGKPETDGVRSLAF 246 (825)
T ss_pred ceeeeecccccccccccc------cccccccccccCchh-hhhccCCCCceeeeeccceeEEee--ccCCccCCceeeee
Confidence 999999999998887776 678889999999977 889999999999999998433222 22223567899999
Q ss_pred CCCCCEEEEEecCc
Q 010324 451 SPKGEWIYCVGEDR 464 (513)
Q Consensus 451 s~~~~~l~~g~~dg 464 (513)
+|++..+++|....
T Consensus 247 n~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 247 NPDGKIVLSGEQIS 260 (825)
T ss_pred cCCceeeecCchhh
Confidence 99999999887654
No 143
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.4e-23 Score=180.30 Aligned_cols=298 Identities=13% Similarity=0.134 Sum_probs=219.7
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccc-cccCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADET-FMMHDETVLCIEFSRDSEMLASGSQDGKIK 289 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 289 (513)
+|.+.|.++.||.++++||+|+.|..++ +|++...-..+.. ++... -..|...|.|++|...++.+.+|+.+++|.
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~-~W~~de~~~~k~~--KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGR-VWNVDELMVRKTP--KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceee-eechHHHHhhcCC--CCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 9999999999999999999999999996 9998753322211 11111 123668999999999999999999999999
Q ss_pred EEEcCCcceeeeccc-ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc-eee--EecccccceeEEEEccCC-CEE
Q 010324 290 VWRIRSGQCLRRLER-AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK-LLK--EFRGHSSYVNDAIFTNDG-SRV 364 (513)
Q Consensus 290 vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~--~~~~~~~~v~~~~~~~~~-~~l 364 (513)
..|+++.+.+..+.. ...+.|..+..+|-.+.|++.+.+|.|.+||.+... ... ...........+.|+|.. .+|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999999998877752 123489999999999999999999999999998765 221 222334567788999955 467
Q ss_pred EEEeCCCcEEEEeCCCCce-eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCC
Q 010324 365 VTASSDCTVKVWDLKSTDC-LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGG 443 (513)
Q Consensus 365 ~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 443 (513)
++.+..+.+-+||.+.... +........+......-.++.|+|.+ ..+++--....-.+||+-.+.+..+...+...+
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC-CeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 7888888899999986431 22222222222223344678899988 555555555556677877655555554433333
Q ss_pred -----cEEEEEECCCCCEEEEEecCceEEEEECCCc-----------------------eeeEeeecccCCeEEEEEcCC
Q 010324 444 -----DFVAACVSPKGEWIYCVGEDRNLYCFSHQSG-----------------------KLEHLMKVHEKDVIGVTHHPH 495 (513)
Q Consensus 444 -----~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-----------------------~~~~~~~~h~~~v~~~~~~p~ 495 (513)
.+.++||.-|. -+++|+.+-.|++|.+... +....+++|..-++.+.|+|.
T Consensus 290 Y~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H 368 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH 368 (609)
T ss_pred ceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCC
Confidence 34466675544 4999999999999987521 134568899999999999999
Q ss_pred CCEEEEEECCCeEEeccC
Q 010324 496 RNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 496 ~~~l~s~~~dg~i~iWdp 513 (513)
..+|++.|-.+.++||.|
T Consensus 369 ~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 369 NNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cceEeccchhhheecccc
Confidence 999999999999999975
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=179.94 Aligned_cols=277 Identities=24% Similarity=0.333 Sum_probs=199.5
Q ss_pred ccccCcccceeeeeccccCceeEEEECCCC--CEEEEEecCCeEEEEEeccc--------cccccccccccccccccCCc
Q 010324 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDG--QFLVSCSFDGFIEVVWDYLS--------GKLKKDLQYQADETFMMHDE 265 (513)
Q Consensus 196 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~la~g~~dg~i~~iwd~~~--------~~~~~~~~~~~~~~~~~h~~ 265 (513)
..+..|.--...+ +|.+.++.+.-++-| .+.|+-+..|.|+ ||++.. +-........+..++.+|..
T Consensus 136 edD~~P~~~~~~i--~h~g~~NRvr~~~~~~~~~~aswse~G~V~-Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~ 212 (440)
T KOG0302|consen 136 EDDRKPQIEMKSI--PHYGGINRVRVSRLGNEVLCASWSENGRVQ-VWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG 212 (440)
T ss_pred hhhcccccccccc--ccccccceeeecccCCcceeeeecccCcEE-EEEchhhhhhhcCccccccccccCceEEecccCc
Confidence 3343444333333 788888888877754 5667778899997 999752 12223334556778889999
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCccee---eecccccccCeEEEEEccC-CCEEEEeeCCCcEEEEecCCC-
Q 010324 266 TVLCIEFSR-DSEMLASGSQDGKIKVWRIRSGQCL---RRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSG- 339 (513)
Q Consensus 266 ~v~~l~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~- 339 (513)
.=+.++||| ....|++|..-+.|++|...+|.-. ..+. +|+..|-.++|+|. ...|++|+.||+|+|||++.+
T Consensus 213 EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~ 291 (440)
T KOG0302|consen 213 EGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP 291 (440)
T ss_pred cceeeecccccccccccCccccceEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeeecCceEEEEEecCCC
Confidence 999999999 3335888888899999998887532 2333 69999999999994 457889999999999999988
Q ss_pred --ceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeEeecCCCCCCCCCceeeEEEecCCCCCeEE
Q 010324 340 --KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD---CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 414 (513)
Q Consensus 340 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 414 (513)
..+. .+.|.+.|+-+.|+..-.+|++|+.||+++|||+++.+ ++.+++ -|..+|+++.|+|.....++
T Consensus 292 ~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk------~Hk~pItsieW~p~e~s~ia 364 (440)
T KOG0302|consen 292 KKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK------YHKAPITSIEWHPHEDSVIA 364 (440)
T ss_pred ccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE------eccCCeeEEEeccccCceEE
Confidence 3333 37899999999999988899999999999999998644 344444 67889999999999888999
Q ss_pred EEcCCCcEEEEEccCeEE-EEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc--cCCeEEEE
Q 010324 415 VCNKTSSIYIMTLQGQVV-KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH--EKDVIGVT 491 (513)
Q Consensus 415 ~~~~~~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~ 491 (513)
+++.|..|.+||+.-..- ..... -+. .+ +-|+ +.+.+-.| ...+..+.
T Consensus 365 asg~D~QitiWDlsvE~D~ee~~~-------------------~a~---~~---L~dl----PpQLLFVHqGQke~Kevh 415 (440)
T KOG0302|consen 365 ASGEDNQITIWDLSVEADEEEIDQ-------------------EAA---EG---LQDL----PPQLLFVHQGQKEVKEVH 415 (440)
T ss_pred eccCCCcEEEEEeeccCChhhhcc-------------------ccc---cc---hhcC----CceeEEEecchhHhhhhe
Confidence 999999999999862110 00000 000 00 1121 11222234 35788999
Q ss_pred EcCC-CCEEEEEECCCeEEeccC
Q 010324 492 HHPH-RNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 492 ~~p~-~~~l~s~~~dg~i~iWdp 513 (513)
|++. ..++++.+.|| +.||.|
T Consensus 416 WH~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 416 WHRQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred eccCCCCeEEEecccc-eeEEEe
Confidence 9994 46888888998 677754
No 145
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=5.9e-23 Score=172.33 Aligned_cols=206 Identities=17% Similarity=0.323 Sum_probs=172.2
Q ss_pred CCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCcc------------ee--eecccccccCeEEEEEcc-CCCEEEEee
Q 010324 263 HDETVLCIEFSR-DSEMLASGSQDGKIKVWRIRSGQ------------CL--RRLERAHSEGVTSLVFSR-DGSQILSTS 326 (513)
Q Consensus 263 h~~~v~~l~~~~-~~~~l~s~~~dg~i~vwd~~~~~------------~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 326 (513)
|.+.|+++...+ .|+++++|+.||.|.+||++... ++ +.-..+|...|.++.|-| |...+.+++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 899999999998 78999999999999999997532 11 112246788999999999 677889999
Q ss_pred CCCcEEEEecCCCceeeEecccccceeEEEEccC---CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEE
Q 010324 327 FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND---GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSV 403 (513)
Q Consensus 327 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
.|.++++||.++-+....|+ ..+.|.+-+++|- .-++++|..|-.|++.|+.+|....++. +|...|.++
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls------GHr~~vlaV 194 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS------GHRDGVLAV 194 (397)
T ss_pred ccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec------cccCceEEE
Confidence 99999999999988887776 4566888888883 3467888889999999999999888776 889999999
Q ss_pred EecCCCCCeEEEEcCCCcEEEEEccC--eEEEEee-----------cCccCCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 404 HLFPKNPDHIVVCNKTSSIYIMTLQG--QVVKSFS-----------SGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 404 ~~~~~~~~~l~~~~~~~~i~i~d~~~--~~~~~~~-----------~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
.|+|...-.+++|+.||.|++||++. .....+. ....+.+.+..+||+.+|.++++.+.|..+++|+
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 99999988999999999999999972 3333222 2234567889999999999999999999999999
Q ss_pred CCCce
Q 010324 471 HQSGK 475 (513)
Q Consensus 471 ~~~~~ 475 (513)
..+|+
T Consensus 275 ~~~G~ 279 (397)
T KOG4283|consen 275 MESGR 279 (397)
T ss_pred cccCc
Confidence 98774
No 146
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.92 E-value=7.2e-23 Score=179.25 Aligned_cols=298 Identities=17% Similarity=0.298 Sum_probs=211.9
Q ss_pred eeccccCceeEEEECCCCC-EEEEEecCCeEEEEEeccccccccc-cccccccccccCCccEEEEEEcCCCCEEEEEeCC
Q 010324 208 IKFGTKSHAECARFSPDGQ-FLVSCSFDGFIEVVWDYLSGKLKKD-LQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285 (513)
Q Consensus 208 ~~~~h~~~v~~~~~s~~g~-~la~g~~dg~i~~iwd~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 285 (513)
+..+...+|..+.|.+++. .+|||+.|..|+ +|.+..+..... ........+..|...|+++.|+|+|..||+|+.+
T Consensus 8 i~wH~~~pv~s~dfq~n~~~~laT~G~D~~ir-iW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~ 86 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDFQKNSLNKLATAGGDKDIR-IWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG 86 (434)
T ss_pred EEecCCCceEEEEeccCcccceecccCcccee-eeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence 3435567899999999776 999999999997 999876554331 2223345677899999999999999999999999
Q ss_pred CcEEEEEcC--------C-----c--ceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccccc
Q 010324 286 GKIKVWRIR--------S-----G--QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS 350 (513)
Q Consensus 286 g~i~vwd~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 350 (513)
|.|.+|... + . -.+.....+|...|..++|+|++.++++++.|+.+++||+..|.....+..|..
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence 999999765 2 1 112223347889999999999999999999999999999999999999999999
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecC----CCCCCCC-------------CceeeEEEecCCCCCeE
Q 010324 351 YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP----PPPLRGG-------------DASVNSVHLFPKNPDHI 413 (513)
Q Consensus 351 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~-------------~~~v~~~~~~~~~~~~l 413 (513)
.|..++|.|-++++++-+.|...+.+++...+.+..... ....... ..-...++|+|++ .++
T Consensus 167 yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG-~ll 245 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG-SLL 245 (434)
T ss_pred ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC-cEE
Confidence 999999999999999999998888887765544333220 0000001 1223456777776 555
Q ss_pred EEEcC----CC-----cEEEEEcc--CeEEEEeecCccCCCcEEEEEECC-----------------CCCEEEEEecCce
Q 010324 414 VVCNK----TS-----SIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSP-----------------KGEWIYCVGEDRN 465 (513)
Q Consensus 414 ~~~~~----~~-----~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~-----------------~~~~l~~g~~dg~ 465 (513)
++... .+ ..++++-. .+....+.. ...+...+.++| -.+.+++....+.
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~---~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~s 322 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS---PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNS 322 (434)
T ss_pred EcccceeeeCCceeeceeEeeccccccCceeecCC---CCcceEEEEeeeeEEEeccccccccccccccceEEEEeecce
Confidence 54432 12 22344332 111111111 112222222222 1234555556789
Q ss_pred EEEEECCCceeeEeee-cccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 466 LYCFSHQSGKLEHLMK-VHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 466 i~iwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
|++||..+..++.... -|-.++++++|+++|..++..|.||...+
T Consensus 323 vyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 323 VYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 9999999887776554 58889999999999999999999997543
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=6.9e-23 Score=190.79 Aligned_cols=297 Identities=18% Similarity=0.258 Sum_probs=225.9
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 289 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 289 (513)
.||.+.|.++.|+|.+..|.+++.|.++ ++|...+..-+..-... .....|........-|+|+++.+++-+..|..+
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksm-iiW~pd~~tGiWv~~vR-lGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSM-IIWKPDENTGIWVDVVR-LGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcce-EEEecCCccceEEEEEE-eecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 4999999999999999999999999999 69998765433222111 112224566789999999999999999999999
Q ss_pred EEEcCCcc--eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC----ceeeEecccccceeEEEEccCCCE
Q 010324 290 VWRIRSGQ--CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG----KLLKEFRGHSSYVNDAIFTNDGSR 363 (513)
Q Consensus 290 vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 363 (513)
+|...... .......+|...|++++|.|.|.+|++.+.|.+-+++-.-.. ..+.+-+-|...++|+++-+....
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 99833211 122223489999999999999999999999999999865411 223334568888999999986678
Q ss_pred EEEEeCCCcEEEEeCCC----------C---------------------------------ce----eEe----------
Q 010324 364 VVTASSDCTVKVWDLKS----------T---------------------------------DC----LQT---------- 386 (513)
Q Consensus 364 l~~~~~dg~i~iwd~~~----------~---------------------------------~~----~~~---------- 386 (513)
+++|..+..+|+|+... + .. ..+
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 89999999999997631 0 00 000
Q ss_pred -------------ecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC-----cEEEEEccCeE-EEEeecCccCCCcEEE
Q 010324 387 -------------FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS-----SIYIMTLQGQV-VKSFSSGKREGGDFVA 447 (513)
Q Consensus 387 -------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~~-~~~~~~~~~~~~~~~~ 447 (513)
++....+.+|...|.+++.+|++ +++++++... .|++|+..... ...+.. |.-.|+.
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~---HsLTVT~ 577 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEG---HSLTVTR 577 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecc---cceEEEE
Confidence 00011234788899999999988 8999988654 58999987432 222333 4567999
Q ss_pred EEECCCCCEEEEEecCceEEEEECCCcee----eEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 448 ACVSPKGEWIYCVGEDRNLYCFSHQSGKL----EHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 448 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
++|||||++|++.+.|.++.+|....... ....+.|+.-|.+..|+|++.+++|+|.|++|+||.
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 99999999999999999999998754322 233678999999999999999999999999999995
No 148
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=9.2e-23 Score=181.32 Aligned_cols=260 Identities=16% Similarity=0.261 Sum_probs=205.2
Q ss_pred ccceeeeeccccCceeEEEECCCCC-EEEEEecCCeEEEEEeccccccccccccccccccccCC-ccEEEEEEcCCCCEE
Q 010324 202 TTLSHTIKFGTKSHAECARFSPDGQ-FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD-ETVLCIEFSRDSEML 279 (513)
Q Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~g~-~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l 279 (513)
....+.+. --..+|.+++|.|+|. .+++++..... +.||+.+.+..+.- ...|+. ..+.....+|++++|
T Consensus 247 N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rrky~-ysyDle~ak~~k~~------~~~g~e~~~~e~FeVShd~~fi 318 (514)
T KOG2055|consen 247 NPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRRKYL-YSYDLETAKVTKLK------PPYGVEEKSMERFEVSHDSNFI 318 (514)
T ss_pred Chhheeee-eccCccceeeecCCCceEEEecccceEE-EEeecccccccccc------CCCCcccchhheeEecCCCCeE
Confidence 33455554 3467899999999999 88888888888 59999888765322 223333 467788899999999
Q ss_pred EEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccccc-ceeEEEEc
Q 010324 280 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS-YVNDAIFT 358 (513)
Q Consensus 280 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~ 358 (513)
+..+..|.|.+....+++.+.++. -.+.|..++|+.+++.|++++.+|.|++||++...++..+....+ .-++++.+
T Consensus 319 a~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S 396 (514)
T KOG2055|consen 319 AIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCIS 396 (514)
T ss_pred EEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeec
Confidence 999999999999999999998886 678899999999999999999999999999999999988875433 34567778
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC--CCcEEEEEccCe-EEEEe
Q 010324 359 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK--TSSIYIMTLQGQ-VVKSF 435 (513)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~-~~~~~ 435 (513)
+++.+|++|+..|.|.|||..+...-..-++...+......|+++.|+++. .+++.++. ...+++..+... ....+
T Consensus 397 ~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVFsNf 475 (514)
T KOG2055|consen 397 LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVFSNF 475 (514)
T ss_pred CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeeeccC
Confidence 999999999999999999977543322223333334456789999999988 77776664 467888877643 33444
Q ss_pred ecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 436 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 436 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
......-+.++|++|||.|.+++.|..+|.|.+|.+.
T Consensus 476 P~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 476 PTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 4444455779999999999999999999999999864
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=2.7e-23 Score=191.46 Aligned_cols=136 Identities=21% Similarity=0.360 Sum_probs=108.1
Q ss_pred eccccCceeEEEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCc
Q 010324 209 KFGTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 287 (513)
Q Consensus 209 ~~~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 287 (513)
..+|.+.|+.+.|+| +..+||+|+.|..|+ ||.+..|-... + ..+...+.+..-.|-|+.|+|..+-|...+..|+
T Consensus 75 l~~H~d~VtDl~FspF~D~LLAT~S~D~~VK-iW~lp~g~~q~-L-Sape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 75 LAAHGDQVTDLGFSPFADELLATCSRDEPVK-IWKLPRGHSQK-L-SAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred eecccceeeccCccccchhhhhcccCCCeeE-EEecCCCcccc-c-CCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 348999999999999 667999999999998 99998543222 1 1122233444567899999996665666667899
Q ss_pred EEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC-ceeeEeccc
Q 010324 288 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-KLLKEFRGH 348 (513)
Q Consensus 288 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~ 348 (513)
+++||+.+++.+..+. +|...|.+..|+.||..+++++.|..|+|||.+.. +.++...+|
T Consensus 152 v~i~D~stqk~~~el~-~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELS-GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred EEEEEcccCceeeccc-CCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 9999999999998887 89999999999999999999999999999998743 444444444
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=9.8e-23 Score=182.61 Aligned_cols=264 Identities=18% Similarity=0.250 Sum_probs=204.8
Q ss_pred eeEEEECCCCC-EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010324 216 AECARFSPDGQ-FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR 294 (513)
Q Consensus 216 v~~~~~s~~g~-~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~ 294 (513)
+.++.|+.... .+|+.+.|..++ +|.-. |+ ...++ ......|. .-.|++......++++|+..+.|+|||++
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~-~~~K~-g~-~~~Vp--~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~ 109 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMR-IKEKD-GK-TPEVP--RVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLR 109 (673)
T ss_pred ceeeeccccceEEEeecCCceeEE-Eeccc-CC-CCccc--eeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhH
Confidence 88899988764 233445677775 88643 32 11111 11122222 33444444455899999999999999999
Q ss_pred CcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccc-ccceeEEEEccCCC-EEEEEeCCCc
Q 010324 295 SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH-SSYVNDAIFTNDGS-RVVTASSDCT 372 (513)
Q Consensus 295 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~dg~ 372 (513)
...+.+.+ .+|.+.|+++.++-...+|++++..|.|.+..+.++.....|... ...|.-+.|+|..+ +|.+++.+|.
T Consensus 110 ~kl~hr~l-kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~ 188 (673)
T KOG4378|consen 110 AKLIHRFL-KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA 188 (673)
T ss_pred HHHHhhhc-cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCe
Confidence 55555555 499999999999999999999999999999999998887777755 44567899999766 5667899999
Q ss_pred EEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-EEEEeecCccCCCcEEEEEEC
Q 010324 373 VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGKREGGDFVAACVS 451 (513)
Q Consensus 373 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~s 451 (513)
|.+||+....+...+. ..|..+...++|+|.++.++++.+.|..|.+||...+ ....+.. ..+...++|+
T Consensus 189 VtlwDv~g~sp~~~~~-----~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~ 259 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHAS-----EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFS 259 (673)
T ss_pred EEEEeccCCCcccchh-----hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeec
Confidence 9999998776555443 3678899999999999999999999999999999844 3333333 3457899999
Q ss_pred CCCCEEEEEecCceEEEEECCC-ceeeEeeecccCCeEEEEEcCCC
Q 010324 452 PKGEWIYCVGEDRNLYCFSHQS-GKLEHLMKVHEKDVIGVTHHPHR 496 (513)
Q Consensus 452 ~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~ 496 (513)
++|.+|++|+..|.|+.||++. ..++..+.+|...|++++|-|..
T Consensus 260 ~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999999999999986 45788999999999999998764
No 151
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=9.1e-22 Score=183.09 Aligned_cols=242 Identities=14% Similarity=0.201 Sum_probs=200.9
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceee-ecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLR-RLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 341 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 341 (513)
...+|.+||++.+.+.||.+-.||.|-+|++..+-... .+..+....|.+++|+ ++..|++.+.+|.|.-||+.+++.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 46789999999999999999999999999998765443 3443456789999999 556788999999999999999999
Q ss_pred eeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc
Q 010324 342 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 421 (513)
Q Consensus 342 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 421 (513)
...+....+.|.+++.+|.+..++.|++||.+..++...+......... ...+.+.++.|.|++ ..++.|+.||.
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~----rq~sRvLslsw~~~~-~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM----RQKSRVLSLSWNPTG-TKIAGGSIDGV 177 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc----cccceEEEEEecCCc-cEEEecccCce
Confidence 9999999999999999999999999999998888888877655543322 346899999999987 78999999999
Q ss_pred EEEEEcc-CeEEEEeecC----cc-CCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCC
Q 010324 422 IYIMTLQ-GQVVKSFSSG----KR-EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 495 (513)
Q Consensus 422 i~i~d~~-~~~~~~~~~~----~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~ 495 (513)
|++||.. +..+...... .. ...-+.++.+-.+ ..|++|.+.|+|.+||...+.+++.+..|.+.|.+++..++
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN 256 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC
Confidence 9999998 4444422111 11 2233455655544 46999999999999999999999999999999999999999
Q ss_pred CCEEEEEECCCeEEec
Q 010324 496 RNLLATYGEDCTMKLW 511 (513)
Q Consensus 496 ~~~l~s~~~dg~i~iW 511 (513)
+++++++|.|+.|.-+
T Consensus 257 ~d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQY 272 (691)
T ss_pred CCeEEEccCCCceEEE
Confidence 9999999999988654
No 152
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=3.3e-23 Score=185.86 Aligned_cols=238 Identities=16% Similarity=0.296 Sum_probs=199.1
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 292 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd 292 (513)
..-|.++..+|||+.|++|+.-.++. |||+......-.. .+....-...+++.+||.+..++|+.||.|.|||
T Consensus 465 dnyiRSckL~pdgrtLivGGeastls-iWDLAapTprika------eltssapaCyALa~spDakvcFsccsdGnI~vwD 537 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLS-IWDLAAPTPRIKA------ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWD 537 (705)
T ss_pred ccceeeeEecCCCceEEeccccceee-eeeccCCCcchhh------hcCCcchhhhhhhcCCccceeeeeccCCcEEEEE
Confidence 45578899999999999999999997 9999865432211 1222345678899999999999999999999999
Q ss_pred cCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCc
Q 010324 293 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCT 372 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 372 (513)
+.+...++.+. +|...+.|+..++||..|-+|+-|++|+.||++++..+.... ..+.|.++..+|.+.++++|-.++.
T Consensus 538 Lhnq~~Vrqfq-GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~ 615 (705)
T KOG0639|consen 538 LHNQTLVRQFQ-GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSN 615 (705)
T ss_pred cccceeeeccc-CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCc
Confidence 99999999997 999999999999999999999999999999999998776654 4567999999999999999999999
Q ss_pred EEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEEC
Q 010324 373 VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVS 451 (513)
Q Consensus 373 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s 451 (513)
+.+-.....+. ..+ .-|++.|.++.|.+.+ .++++.+.|+.+-.|... |..+..... ...|.++.+|
T Consensus 616 vevlh~skp~k-yql------hlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGasiFqskE----~SsVlsCDIS 683 (705)
T KOG0639|consen 616 VEVLHTSKPEK-YQL------HLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQSKE----SSSVLSCDIS 683 (705)
T ss_pred EEEEecCCccc-eee------cccccEEEEEEecccC-ceeeecCchhhhhhccCccccceeeccc----cCcceeeeec
Confidence 98887654332 222 2578899999999988 999999999999999987 554444433 4569999999
Q ss_pred CCCCEEEEEecCceEEEEEC
Q 010324 452 PKGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 452 ~~~~~l~~g~~dg~i~iwd~ 471 (513)
.|.++|++|+.|..-.+|.+
T Consensus 684 ~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 684 FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCceEEEecCCCcceEEEEE
Confidence 99999999999988777764
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.1e-23 Score=205.30 Aligned_cols=283 Identities=15% Similarity=0.253 Sum_probs=213.3
Q ss_pred EEEECCCCC-EEEEEec----------CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCE----EEEE
Q 010324 218 CARFSPDGQ-FLVSCSF----------DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM----LASG 282 (513)
Q Consensus 218 ~~~~s~~g~-~la~g~~----------dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~----l~s~ 282 (513)
..+|+|.+. ++|+|.. +.++. ||.+........+. ....+ ......+.++|.+.|.. ||.|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slE-ifeld~~~~~~dlk--~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLE-IFELDFSDESSDLK--PVGSL-QSSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccc-eeeecccCcccccc--ccccc-cccccceeeeecccCCCccceeecc
Confidence 468999886 6666543 44453 55544222111110 00011 13567889999997765 8888
Q ss_pred eCCCcEEEEEcCC---c---ceeeecccccccCeEEEEEccCC-CEEEEeeCCCcEEEEecCCCceeeEec--cccccee
Q 010324 283 SQDGKIKVWRIRS---G---QCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKLLKEFR--GHSSYVN 353 (513)
Q Consensus 283 ~~dg~i~vwd~~~---~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~ 353 (513)
..||.|.+||... + ..+.+.. .|.+.|..+.|++.. +.|++|+.||.|.|||++..+.-.... .....|.
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~ 165 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK 165 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence 9999999999765 2 2334444 799999999999955 499999999999999998755444432 2456799
Q ss_pred EEEEccC-CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC---cEEEEEcc-
Q 010324 354 DAIFTND-GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS---SIYIMTLQ- 428 (513)
Q Consensus 354 ~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~---~i~i~d~~- 428 (513)
+++|+.. ...|++++.+|.+.|||++..+.+-.+.... ....+..+.|+|++...+++++.|. .|.+||++
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~----~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP----GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCCcccccccCC----CccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 9999874 4468888899999999999887666554332 2246789999999988888888764 69999998
Q ss_pred -CeEEEEeecCccCCCcEEEEEECCCC-CEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCC-CEEEEEECC
Q 010324 429 -GQVVKSFSSGKREGGDFVAACVSPKG-EWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR-NLLATYGED 505 (513)
Q Consensus 429 -~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~d 505 (513)
...++.+. .|...+.++.|++.+ .++++++.|+.|.+|+.++++.+..+....+.+..+.|+|.. ..++.++-|
T Consensus 242 assP~k~~~---~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 242 ASSPLKILE---GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred cCCchhhhc---ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheec
Confidence 34455553 355679999998876 889999999999999999999999999888899999999955 589999999
Q ss_pred CeEEecc
Q 010324 506 CTMKLWK 512 (513)
Q Consensus 506 g~i~iWd 512 (513)
|.|.|+.
T Consensus 319 gkI~I~s 325 (1049)
T KOG0307|consen 319 GKISIYS 325 (1049)
T ss_pred cceeeee
Confidence 9999874
No 154
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.6e-23 Score=183.09 Aligned_cols=294 Identities=21% Similarity=0.350 Sum_probs=231.3
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC--CCCEEEEEeCCCcE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGSQDGKI 288 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~i 288 (513)
+|.+.|..+.|+..|..|++|+.|..| ++||+..+.....+. .||...|....|-| +...+++++.||.|
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~v-v~WdW~~~~~~l~f~-------SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQV-VVWDWVSGSPKLSFE-------SGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred CCCCccceeeecccCceeeccCccceE-EeehhhccCcccccc-------cccccchhhhhccCCCCCcCceeccccCce
Confidence 899999999999999999999999999 699999887665443 36999999999998 45679999999999
Q ss_pred EEEEcC-Cccee-eecccccccCeEEEEEccCC-CEEEEeeCCCcEEEEecCCCceeeEec---cccc---ceeEEEEcc
Q 010324 289 KVWRIR-SGQCL-RRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKLLKEFR---GHSS---YVNDAIFTN 359 (513)
Q Consensus 289 ~vwd~~-~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~---~v~~~~~~~ 359 (513)
++=.+. ++.+. ......|.++|..++.-|+. ..|.+++.|+.+.-+|++.+.....+. .+.. ...+++.+|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 988764 33332 12223789999999999965 458899999999999998875543332 2222 567888888
Q ss_pred CCC-EEEEEeCCCcEEEEeCCCCce------eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc---C
Q 010324 360 DGS-RVVTASSDCTVKVWDLKSTDC------LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ---G 429 (513)
Q Consensus 360 ~~~-~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~---~ 429 (513)
... .+++++.|..+++||.+.-.. +..+.+..........|++++++.++ .-++++..|-.|+++... |
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccC
Confidence 554 899999999999999875432 34455544444556678999999777 556666778888998654 3
Q ss_pred ----------eEEEEeecCccCCCcEEEEEE-CCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCE
Q 010324 430 ----------QVVKSFSSGKREGGDFVAACV-SPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNL 498 (513)
Q Consensus 430 ----------~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 498 (513)
..++....++.....|..+-| .|...|+++|+.-|.|.||+-.+++.+..+.+....|+|+.=||.-..
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 223443444445555666655 899999999999999999999999999999988889999999999999
Q ss_pred EEEEECCCeEEeccC
Q 010324 499 LATYGEDCTMKLWKP 513 (513)
Q Consensus 499 l~s~~~dg~i~iWdp 513 (513)
||++|-|..|+||-|
T Consensus 451 LAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 451 LASSGIDHDVKIWTP 465 (559)
T ss_pred hhccCCccceeeecC
Confidence 999999999999987
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.3e-22 Score=170.13 Aligned_cols=275 Identities=17% Similarity=0.236 Sum_probs=197.9
Q ss_pred CEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCcceeeecc
Q 010324 226 QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGSQDGKIKVWRIRSGQCLRRLE 303 (513)
Q Consensus 226 ~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 303 (513)
+.+|++...|.|+ +||..+++....+. ++...++.++|.. ....+.+|+.||+|++||+++......+.
T Consensus 41 ~~vav~lSngsv~-lyd~~tg~~l~~fk--------~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVR-LYDKGTGQLLEEFK--------GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEE-EEeccchhhhheec--------CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 5799999999998 99999987766544 5888888999987 46789999999999999999876655554
Q ss_pred ccc--ccCeEEEEEccCCCEEEEeeC----CCcEEEEecCCCce-eeEe-cccccceeEEEEcc-CCCEEEEEeCCCcEE
Q 010324 304 RAH--SEGVTSLVFSRDGSQILSTSF----DSTARIHGLKSGKL-LKEF-RGHSSYVNDAIFTN-DGSRVVTASSDCTVK 374 (513)
Q Consensus 304 ~~~--~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 374 (513)
... ..+..+++.+.+++.+++|+. +-.|.+||++..+. +..+ ..|...|+++.|+| +.+.|++|+.||.|.
T Consensus 112 ~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 322 246777877777888888853 56799999998876 5444 46899999999999 557999999999999
Q ss_pred EEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCc---------cCCCc
Q 010324 375 VWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGK---------REGGD 444 (513)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~---------~~~~~ 444 (513)
+||+.....-..+ .....+..+|..+.|...+-+.+.+-+......+|+++ +.....+.... .....
T Consensus 192 lfD~~~d~EeDaL---~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY 268 (376)
T KOG1188|consen 192 LFDTKKDNEEDAL---LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDY 268 (376)
T ss_pred eeecCCCcchhhH---HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhh
Confidence 9998754221111 11224567899999999887789999999999999998 33222222110 01112
Q ss_pred EEEEEECCCCCEEEEEec-CceEEEEECC---C---ceeeEeeec-ccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 445 FVAACVSPKGEWIYCVGE-DRNLYCFSHQ---S---GKLEHLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 445 ~~~~~~s~~~~~l~~g~~-dg~i~iwd~~---~---~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+.......++...+.++. -|...++-+. + .+.+..+.+ |..-|.++.|...+.++.|||.||.+.+|+
T Consensus 269 ~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 269 VINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 222222223444444443 5555555433 2 334455665 667789999998999999999999999997
No 156
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=3.6e-22 Score=165.11 Aligned_cols=296 Identities=17% Similarity=0.211 Sum_probs=208.2
Q ss_pred cccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEE
Q 010324 201 PTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280 (513)
Q Consensus 201 ~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 280 (513)
|..+...++ +|.+.|+|+.|..+++ |.+|..-|.++ +|++.+.+....+.. .|...|+.+.--|+ ..+.
T Consensus 3 pPdP~fvLR-p~~~~v~s~~fqa~~r-L~sg~~~G~V~-~w~lqt~r~~~~~r~-------~g~~~it~lq~~p~-d~l~ 71 (323)
T KOG0322|consen 3 PPDPFFVLR-PHSSSVTSVLFQANER-LMSGLSVGIVK-MWVLQTERDLPLIRL-------FGRLFITNLQSIPN-DSLD 71 (323)
T ss_pred CCCCeeEec-cccchheehhhccchh-hhcccccceEE-EEEeecCccchhhhh-------hccceeeceeecCC-cchh
Confidence 445556666 8999999999998876 89999999996 999998776554431 27788999999887 5688
Q ss_pred EEeCCCcEEEEEcCCcceeeecccccccCeEEEEEcc-----CCC----EEEEeeCCC-cEEEEecCCCceeeEec----
Q 010324 281 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-----DGS----QILSTSFDS-TARIHGLKSGKLLKEFR---- 346 (513)
Q Consensus 281 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~----~l~~~~~dg-~i~i~d~~~~~~~~~~~---- 346 (513)
+-+.|+.+.+|++.-+..+. .|.-.++++.|.+ +++ .++.-+... .+.+-|......+....
T Consensus 72 tqgRd~~L~lw~ia~s~~i~----i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~ 147 (323)
T KOG0322|consen 72 TQGRDPLLILWTIAYSAFIS----IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSER 147 (323)
T ss_pred hcCCCceEEEEEccCcceEE----EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhc
Confidence 88899999999998755432 2333444555543 111 111111110 02222222222222111
Q ss_pred ccccceeEEEEcc-CCC--EEEEEeCCCcEEEEeCCCCceeEeecC----CCCCCCCCceeeEEEecCCCCCeEEEEcCC
Q 010324 347 GHSSYVNDAIFTN-DGS--RVVTASSDCTVKVWDLKSTDCLQTFKP----PPPLRGGDASVNSVHLFPKNPDHIVVCNKT 419 (513)
Q Consensus 347 ~~~~~v~~~~~~~-~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 419 (513)
+..+.+.+..+.. ++. ++++|..+|.+.+||+.++..+-.++. ......|..++.++.+.+.. ..=++++.+
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~ 226 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGAD 226 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCcc
Confidence 2345677766543 333 567788899999999999855444432 22345678899999998755 555677788
Q ss_pred CcEEEEEccCe--EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCC
Q 010324 420 SSIYIMTLQGQ--VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN 497 (513)
Q Consensus 420 ~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~ 497 (513)
..+..|+++.. .+..-......+..+..+.+-||++.+|+++.|+.|++|+.++..++..++.|.+.|++++|+|+.+
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred ccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 88889988722 1111111111234577888999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCeEEecc
Q 010324 498 LLATYGEDCTMKLWK 512 (513)
Q Consensus 498 ~l~s~~~dg~i~iWd 512 (513)
++|++|.|++|.+|+
T Consensus 307 lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 307 LMAAASKDARISLWK 321 (323)
T ss_pred hhhhccCCceEEeee
Confidence 999999999999997
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=5e-22 Score=172.32 Aligned_cols=206 Identities=19% Similarity=0.296 Sum_probs=165.4
Q ss_pred ccccCeEEEEEccCC--CEEEEeeCCCcEEEEecC----------------CCceeeEecccccceeEEEEccCC-CEEE
Q 010324 305 AHSEGVTSLVFSRDG--SQILSTSFDSTARIHGLK----------------SGKLLKEFRGHSSYVNDAIFTNDG-SRVV 365 (513)
Q Consensus 305 ~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~----------------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 365 (513)
+|.+.++.+.-.+-+ .+.++=+..|.|+||++. ..+++.++.+|...-..++|||-. ..|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 466667777666644 445555778999999985 235677888999999999999932 2488
Q ss_pred EEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcE
Q 010324 366 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDF 445 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 445 (513)
+|..-+.|++|...++.-.. ...++.+|..+|..++|+|.....+++|+.||.|+|||++....+.-.....+.+.|
T Consensus 229 sGDc~~~I~lw~~~~g~W~v---d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKV---DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred cCccccceEeeeeccCceee---cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence 88888899999998865322 223445799999999999999999999999999999999954222222225577889
Q ss_pred EEEEECCCCCEEEEEecCceEEEEECCC---ceeeEeeecccCCeEEEEEcC-CCCEEEEEECCCeEEeccC
Q 010324 446 VAACVSPKGEWIYCVGEDRNLYCFSHQS---GKLEHLMKVHEKDVIGVTHHP-HRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 446 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iWdp 513 (513)
+.+.|+.+..+|++|+.||++.|||++. ++++..++.|..+|+++.|+| +...|+++|.|..|.|||.
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 9999999988999999999999999875 678899999999999999999 4568888899999999983
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=9.2e-22 Score=180.38 Aligned_cols=252 Identities=21% Similarity=0.334 Sum_probs=192.5
Q ss_pred cccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCC--EEE
Q 010324 246 GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS--QIL 323 (513)
Q Consensus 246 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~ 323 (513)
.+-+..++......+.||.+.|.||+..|.|.+|++|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.+. .|+
T Consensus 382 p~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLA 459 (733)
T KOG0650|consen 382 PKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLA 459 (733)
T ss_pred hhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEE
Confidence 3334444445556788999999999999999999999999999999999999999986 677999999999665 344
Q ss_pred EeeCCCcEEEEecCCC---------------------------------c----eeeEecccccceeEEEEccCCCEEEE
Q 010324 324 STSFDSTARIHGLKSG---------------------------------K----LLKEFRGHSSYVNDAIFTNDGSRVVT 366 (513)
Q Consensus 324 ~~~~dg~i~i~d~~~~---------------------------------~----~~~~~~~~~~~v~~~~~~~~~~~l~~ 366 (513)
++- ...+.+.+..-| + -+...-.|...|+.+.|+..|.||++
T Consensus 460 vA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlat 538 (733)
T KOG0650|consen 460 VAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLAT 538 (733)
T ss_pred EEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEE
Confidence 433 333444432211 0 01122246778999999999999999
Q ss_pred EeCC---CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEEEeecCccCC
Q 010324 367 ASSD---CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKREG 442 (513)
Q Consensus 367 ~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~ 442 (513)
...+ ..|.|+++........|. ...+.+.++.|+|..+.++++ + ...|++||+.. ..++.+..+ .
T Consensus 539 V~~~~~~~~VliHQLSK~~sQ~PF~------kskG~vq~v~FHPs~p~lfVa-T-q~~vRiYdL~kqelvKkL~tg---~ 607 (733)
T KOG0650|consen 539 VMPDSGNKSVLIHQLSKRKSQSPFR------KSKGLVQRVKFHPSKPYLFVA-T-QRSVRIYDLSKQELVKKLLTG---S 607 (733)
T ss_pred eccCCCcceEEEEecccccccCchh------hcCCceeEEEecCCCceEEEE-e-ccceEEEehhHHHHHHHHhcC---C
Confidence 8764 568899987665443332 345789999999988444443 3 45799999973 333333332 3
Q ss_pred CcEEEEEECCCCCEEEEEecCceEEEEECCCc-eeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 443 GDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG-KLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 443 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
..+..++++|.|..|++|+.|+.+..||+.-+ ++.+.+..|...+++|+||+.-++|++|++||++.|+
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 45788999999999999999999999999754 6778899999999999999999999999999999886
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.5e-21 Score=173.60 Aligned_cols=244 Identities=19% Similarity=0.295 Sum_probs=189.2
Q ss_pred cCCccEEEEEEcCCC--CEEEEEeCCCcEEEEEcCCcc----eeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEE
Q 010324 262 MHDETVLCIEFSRDS--EMLASGSQDGKIKVWRIRSGQ----CLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIH 334 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~--~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~ 334 (513)
-+..+|++++|+|.. +.+|+|+..|.|-+||+.+.+ .+..+. .|..+|.++.|+| +...+++.+.||+|++-
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCceeeee
Confidence 388999999999943 588999999999999995322 233443 7899999999999 56789999999999999
Q ss_pred ecCCCce--eeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCe
Q 010324 335 GLKSGKL--LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH 412 (513)
Q Consensus 335 d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (513)
|++.+.. +.........+.++.|+.+...++.++.=|...+||++++..... ....|+..|.+++++|..+.+
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~-----~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE-----NLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch-----hhhhhhcccceeecCCCCchh
Confidence 9976643 333333556678888988888888888878999999998764211 123566799999999999999
Q ss_pred EEEEcCCCcEEEEEccC---eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECC----CceeeEeeecccC
Q 010324 413 IVVCNKTSSIYIMTLQG---QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ----SGKLEHLMKVHEK 485 (513)
Q Consensus 413 l~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~----~~~~~~~~~~h~~ 485 (513)
+++++.|++.+|||++. +.. .+.....|...|.+++|||.|..|++.+.|..|+|||.. ...+...+. |..
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred eeecccCcceeeeehhhhcCCCC-cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 99999999999999982 221 133344567789999999999889999999999999983 233333333 322
Q ss_pred ------CeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 486 ------DVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 486 ------~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.....+|.|+.+++++|-.-..|-|+|+
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 2445789999999999988878888774
No 160
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.2e-20 Score=160.35 Aligned_cols=242 Identities=21% Similarity=0.258 Sum_probs=177.9
Q ss_pred ccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc-----eeeecccccccCeEEEEEccCCCEEEEeeC-CCcEE
Q 010324 259 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ-----CLRRLERAHSEGVTSLVFSRDGSQILSTSF-DSTAR 332 (513)
Q Consensus 259 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~ 332 (513)
.+.+|.+.|++++|+.||++|++++.|++|++|+++.-. +++.- -..+..+.++|+||.+-+++... ..+++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 577899999999999999999999999999999987532 12111 12335788999999887765554 45789
Q ss_pred EEecCCC---ceee---------EecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCcee
Q 010324 333 IHGLKSG---KLLK---------EFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASV 400 (513)
Q Consensus 333 i~d~~~~---~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 400 (513)
+|.+... .... --+.|.-.+..+-....++++++++.|..|.+|+++ |+.+.++.. ....-
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt------nq~~n 231 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT------NQSSN 231 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc------ccccc
Confidence 9876422 1111 112355567777777888999999999999999999 887777653 33455
Q ss_pred eEEEecCCCCCeEEEEcCCCcEEEEEcc----C--eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC-
Q 010324 401 NSVHLFPKNPDHIVVCNKTSSIYIMTLQ----G--QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS- 473 (513)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~----~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~- 473 (513)
+..+.+|++ .++++++-...+++|..- | +.+........|...+..+||+++...+++.+.||++++||..-
T Consensus 232 ~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 232 YDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred cceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 677889988 999999999999999874 2 23444455566788899999999999999999999999999752
Q ss_pred ------ceeeEeee----cccCCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 474 ------GKLEHLMK----VHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 474 ------~~~~~~~~----~h~~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
.+.++... .-.+....+..+|.|..||.+. ...++++
T Consensus 311 Y~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 311 YEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred EecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 12222221 1223344899999999888664 3345554
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.9e-21 Score=174.37 Aligned_cols=270 Identities=13% Similarity=0.188 Sum_probs=202.7
Q ss_pred EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCcce--eeecc
Q 010324 227 FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQC--LRRLE 303 (513)
Q Consensus 227 ~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~vwd~~~~~~--~~~~~ 303 (513)
+.+..+.| .++ +||....+....+.... ....+.++.|+.... .+++.+.|..+++|.- .|+. +....
T Consensus 5 l~~aS~gd-~~k-l~D~s~~~~~~~~~~~t------~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~ 75 (673)
T KOG4378|consen 5 LHVASTGD-KTK-LSDFSDLETKSEYVHQT------AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEK-DGKTPEVPRVR 75 (673)
T ss_pred eeeeccCC-ceE-EeecccccCccccccCC------CCCcceeeeccccceEEEeecCCceeEEEecc-cCCCCccceee
Confidence 33333334 465 99998766544332111 233489999998664 2333456788999973 3331 11121
Q ss_pred cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 010324 304 RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDC 383 (513)
Q Consensus 304 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 383 (513)
......-.|++......++++|+..+.|+|||++...+.+.+++|...|+++.++....++++++..|-|.+..+.++..
T Consensus 76 k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 76 KLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred ccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence 12233445566666668999999999999999997777788899999999999999999999999999999999999876
Q ss_pred eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCC-CEEEEEec
Q 010324 384 LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKG-EWIYCVGE 462 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~ 462 (513)
..++... ....+.-+.++|....++.+++.+|.|.+||..+..... .....|..+...+||+|.. .++++.+.
T Consensus 156 tt~f~~~-----sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~-~~~~~HsAP~~gicfspsne~l~vsVG~ 229 (673)
T KOG4378|consen 156 TTTFTID-----SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF-HASEAHSAPCRGICFSPSNEALLVSVGY 229 (673)
T ss_pred ccceecC-----CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc-chhhhccCCcCcceecCCccceEEEecc
Confidence 6666532 234667889999988899999999999999999654322 1223456778899999965 56788899
Q ss_pred CceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 463 DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 463 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
|..|++||+.+.+....+. ...+.+.++|.++|.+|+.|+..|.|..||
T Consensus 230 Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred cceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 9999999999877766664 456899999999999999999999999998
No 162
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=3.6e-22 Score=182.11 Aligned_cols=256 Identities=22% Similarity=0.352 Sum_probs=190.2
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
.|.+.|..++|+|....|++|+.||+++ +|+++...........+..+|.+|.++|.|++..+++..+++|+.||+|+.
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk-~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLK-LWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchh-hhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 7889999999999999999999999998 999965444444455677789999999999999999999999999999999
Q ss_pred EEcCCc---------ceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecc--cccceeEEEEcc
Q 010324 291 WRIRSG---------QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG--HSSYVNDAIFTN 359 (513)
Q Consensus 291 wd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~ 359 (513)
|++... ..+.....+|...|+.+++++....|++++.||+++.|+...... ..+.. ..+...++.+..
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~s 449 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTS 449 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeecc
Confidence 966421 122223348999999999999999999999999999999866555 33332 223344555543
Q ss_pred CC-CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecC
Q 010324 360 DG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSG 438 (513)
Q Consensus 360 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 438 (513)
.. ...++...-+.-.++++........+... ..+.
T Consensus 450 s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~---------------------------~~~~----------------- 485 (577)
T KOG0642|consen 450 SRPAHSLASFRFGYTSIDDMEVVSDLLIFESS---------------------------ASPG----------------- 485 (577)
T ss_pred chhHhhhhhcccccccchhhhhhhheeecccc---------------------------CCCc-----------------
Confidence 22 12222222222223333322222211100 0000
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 439 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
......+..+.++|.+.+.+++.+|+.|+++|..++.++.....|...++++++.|+|.+|++++.||.+++|+
T Consensus 486 ~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 486 PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 00122356677889999999999999999999999999999999999999999999999999999999999996
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.8e-21 Score=161.96 Aligned_cols=196 Identities=13% Similarity=0.242 Sum_probs=166.6
Q ss_pred eEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecC
Q 010324 310 VTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP 389 (513)
Q Consensus 310 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 389 (513)
..|+.|++.|.+||+|+.||.|.|||+.+...-..+.+|..+|++++|+++|+.|++++.|..|.+||+..|.+.+.+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 78999999999999999999999999999998889999999999999999999999999999999999999998888763
Q ss_pred CCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccC--CCcEEEEEECCCCCEEEEEecCceEE
Q 010324 390 PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE--GGDFVAACVSPKGEWIYCVGEDRNLY 467 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~l~~g~~dg~i~ 467 (513)
+++|....|+|...+.++++-.+..-.+.++....-..+...... .....+..|.+.|+++++|...|.+.
T Consensus 106 -------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll 178 (405)
T KOG1273|consen 106 -------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL 178 (405)
T ss_pred -------cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence 468999999999888888877776667777664322222222111 11222346889999999999999999
Q ss_pred EEECCCceeeEeeeccc-CCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 468 CFSHQSGKLEHLMKVHE-KDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 468 iwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
++|..+.+++..++... ..|..+.++..|+.|+.-+.|..||.|+
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 99999999998887666 7899999999999999999999999986
No 164
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=1e-20 Score=158.59 Aligned_cols=281 Identities=20% Similarity=0.252 Sum_probs=193.1
Q ss_pred eeeeccccCceeEEEECC-CCCEEEEEecC-------CeEEEEEecccccccc-ccccccccccc-cCCccEEEEEEcCC
Q 010324 206 HTIKFGTKSHAECARFSP-DGQFLVSCSFD-------GFIEVVWDYLSGKLKK-DLQYQADETFM-MHDETVLCIEFSRD 275 (513)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~-~g~~la~g~~d-------g~i~~iwd~~~~~~~~-~~~~~~~~~~~-~h~~~v~~l~~~~~ 275 (513)
...-++|.++|+.++-+| +.+.|+++..+ ..+. ||.+....... .........+. .+-+.|.|+.|.|+
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aa-iw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAA-IWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEE-EEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 333458899999999999 55667776442 2343 89876432221 11111222222 34568999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCcce-eeecc----cccccCeEEEEEcc--CCCEEEEeeCCCcEEEEecCCCceeeEec-c
Q 010324 276 SEMLASGSQDGKIKVWRIRSGQC-LRRLE----RAHSEGVTSLVFSR--DGSQILSTSFDSTARIHGLKSGKLLKEFR-G 347 (513)
Q Consensus 276 ~~~l~s~~~dg~i~vwd~~~~~~-~~~~~----~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~ 347 (513)
+..+++-. |..|.+|++..+.. +..+. ..+....++-+|+| +|+.+++.+ |+++..||+++.+....+. +
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhh
Confidence 99999886 88999999987765 22221 23456788899998 788877766 8999999999988777664 5
Q ss_pred cccceeEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEE
Q 010324 348 HSSYVNDAIFTNDGS-RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT 426 (513)
Q Consensus 348 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d 426 (513)
|...|.++.|+|+.. +|++++.||.|++||.+.-+ .+...+.+|...+.++.|+|....++++++.|..|.+|.
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence 888999999999765 68889999999999998644 223334578899999999999989999999999999988
Q ss_pred ccCeEE-EEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcC-CCCEEEEEEC
Q 010324 427 LQGQVV-KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP-HRNLLATYGE 504 (513)
Q Consensus 427 ~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~ 504 (513)
...-.. ..+...... .-.++. .....++ -+.. ..+.++..|...|.+++|+. +.=.||+-|.
T Consensus 288 a~svSSE~qi~~~~de-------se~e~~------dseer~k--pL~d-g~l~tydehEDSVY~~aWSsadPWiFASLSY 351 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDE-------SESEDE------DSEERVK--PLQD-GQLETYDEHEDSVYALAWSSADPWIFASLSY 351 (370)
T ss_pred cccccccccccccccc-------ccCcch------hhHHhcc--cccc-cccccccccccceEEEeeccCCCeeEEEecc
Confidence 652110 011000000 000000 0000111 1111 23456778999999999998 5557889999
Q ss_pred CCeEEe
Q 010324 505 DCTMKL 510 (513)
Q Consensus 505 dg~i~i 510 (513)
||++.|
T Consensus 352 DGRviI 357 (370)
T KOG1007|consen 352 DGRVII 357 (370)
T ss_pred CceEEe
Confidence 999876
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.6e-21 Score=169.89 Aligned_cols=238 Identities=18% Similarity=0.307 Sum_probs=182.7
Q ss_pred ccEEEEEEcC-------CCCEEEEEeCCCcEEEEEcCCcce--------------e-----ee-cccccccCeEEEEEcc
Q 010324 265 ETVLCIEFSR-------DSEMLASGSQDGKIKVWRIRSGQC--------------L-----RR-LERAHSEGVTSLVFSR 317 (513)
Q Consensus 265 ~~v~~l~~~~-------~~~~l~s~~~dg~i~vwd~~~~~~--------------~-----~~-~~~~~~~~v~~~~~~~ 317 (513)
....|++|.. .|+++|.|+.|..|.|||+.--.. . +. ...+|+..|.+++|+.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~ 253 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR 253 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc
Confidence 3446777754 367999999999999999852110 0 00 0125778888999987
Q ss_pred C-CCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCce-eEeecCCCCCC
Q 010324 318 D-GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDC-LQTFKPPPPLR 394 (513)
Q Consensus 318 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~ 394 (513)
+ .+.|++||.|.+|++||+.++++...+..|.+.|.++.|+| ....|++|+.|+++.+.|.|.... -..+
T Consensus 254 ~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w------- 326 (463)
T KOG0270|consen 254 NFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW------- 326 (463)
T ss_pred ccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-------
Confidence 4 45789999999999999999999999999999999999999 456899999999999999994221 1112
Q ss_pred CCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeEEEEeecCccCCCcEEEEEECCCC-CEEEEEecCceEEEEEC
Q 010324 395 GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKG-EWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 395 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~ 471 (513)
...+.|-.++|.|.....+++++.||.++-+|++ ++.+..+.. |...|.++++++.- .++++++.|+.|.+|++
T Consensus 327 k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A---Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 327 KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA---HDDEISGLSVNIQTPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe---ccCCcceEEecCCCCcceeeccccceEEEEee
Confidence 2356899999999999999999999999999998 555555554 56789999997754 57889999999999998
Q ss_pred CCceeeEe--eecccCCeEEEEEcCCC-CEEEEEECCCeEEecc
Q 010324 472 QSGKLEHL--MKVHEKDVIGVTHHPHR-NLLATYGEDCTMKLWK 512 (513)
Q Consensus 472 ~~~~~~~~--~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iWd 512 (513)
........ -.-.-+...|+++.|+- .+++.||..+.++|||
T Consensus 404 ~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 404 DVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred cCCCCcccccccccccceeecccCCCcceEEEecCccceEEEee
Confidence 65443211 11112346677888855 4678888888999998
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=1.8e-20 Score=159.63 Aligned_cols=244 Identities=15% Similarity=0.229 Sum_probs=185.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc------------eeeecccccccCeEEEEEc-------cCCCEEEEeeC
Q 010324 267 VLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ------------CLRRLERAHSEGVTSLVFS-------RDGSQILSTSF 327 (513)
Q Consensus 267 v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~v~~~~~~-------~~~~~l~~~~~ 327 (513)
...+.|+|||..|++-+.|..+.+|++...- ....+.......|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4567899999999999999999999985211 1112222345677888885 67789999999
Q ss_pred CCcEEEEecCCCceeeEecc--cc---cceeEEEEccCCCEEEEEeCCCcEEEEeC-CCCceeEeecCCC-CCCCCCcee
Q 010324 328 DSTARIHGLKSGKLLKEFRG--HS---SYVNDAIFTNDGSRVVTASSDCTVKVWDL-KSTDCLQTFKPPP-PLRGGDASV 400 (513)
Q Consensus 328 dg~i~i~d~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~-~~~~~~~~v 400 (513)
+.-|++||.-+|+....+.+ |. ....+++|+|||..|++|. ...|++||+ +.|..-..+.... ...+..+-+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999998877764 22 2456899999999998775 577999999 6665332222211 123456788
Q ss_pred eEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCC-ceeeE
Q 010324 401 NSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQS-GKLEH 478 (513)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~-~~~~~ 478 (513)
.+++++|.....+++++....+-++.-.+...-.+.. .+++.|+.++|.++|+.+++|+ .|-.|.+||++. +.++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg--gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG--GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeec--ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 9999999998899999999999999887543333333 4577899999999999999999 578999999975 45667
Q ss_pred eeecccC-CeE--EEEEcCCCCEEEEEECCCeEEeccC
Q 010324 479 LMKVHEK-DVI--GVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 479 ~~~~h~~-~v~--~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+..|.+ .=. -+...|++++|++|+.||.|++||.
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 7777765 222 3455688999999999999999983
No 167
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.7e-19 Score=173.38 Aligned_cols=301 Identities=16% Similarity=0.238 Sum_probs=213.7
Q ss_pred cceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE
Q 010324 203 TLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 282 (513)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 282 (513)
...+.+...|.-.++|.++||+++++|+|..||.|. +|.-...+.. . ...+.+.-|...|++++|+++|.+|++|
T Consensus 195 ~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~-vw~d~~~~~~-~---~t~t~lHWH~~~V~~L~fS~~G~~LlSG 269 (792)
T KOG1963|consen 195 TSSRDITVHHTFNITCVALSPNERYLAAGDSDGRIL-VWRDFGSSDD-S---ETCTLLHWHHDEVNSLSFSSDGAYLLSG 269 (792)
T ss_pred eccchhhhhhcccceeEEeccccceEEEeccCCcEE-EEeccccccc-c---ccceEEEecccccceeEEecCCceEeec
Confidence 334455557877899999999999999999999996 8864331111 0 1122455599999999999999999999
Q ss_pred eCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecc-----------cccc
Q 010324 283 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG-----------HSSY 351 (513)
Q Consensus 283 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~ 351 (513)
+..|.+.+|.+.+++ +++.+.-.++|..+.++||+.+.+....|+.|.+....+.....++.+ ..+-
T Consensus 270 G~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 270 GREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL 347 (792)
T ss_pred ccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence 999999999999988 555557789999999999999999999999999998765554443332 2345
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCC-----CCCceeeEEEecCCCCCeEEEEc--------C
Q 010324 352 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLR-----GGDASVNSVHLFPKNPDHIVVCN--------K 418 (513)
Q Consensus 352 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~--------~ 418 (513)
.+.++++|..+.++-.+..|.|.+||+-+...+..+....... .+...+++++.+-. ..++++.. .
T Consensus 348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~-gs~maT~E~~~d~~~~~ 426 (792)
T KOG1963|consen 348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF-GSWMATLEARIDKFNFF 426 (792)
T ss_pred ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc-ceEEEEeeeeehhhhcc
Confidence 6778899977788888999999999999887666554322111 12234555555555 36666653 2
Q ss_pred --CCcEEEEEccCe----EEEEeecCccCCCcEEEEEE-CCCC-CEEEEEecCceEEEEECCCc----------eeeEee
Q 010324 419 --TSSIYIMTLQGQ----VVKSFSSGKREGGDFVAACV-SPKG-EWIYCVGEDRNLYCFSHQSG----------KLEHLM 480 (513)
Q Consensus 419 --~~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~-s~~~-~~l~~g~~dg~i~iwd~~~~----------~~~~~~ 480 (513)
.-.+++|-..+. .+.+.. ..+|+..+...++ ++.. ...++++.||.+++|-+... .+...-
T Consensus 427 ~~e~~LKFW~~n~~~kt~~L~T~I-~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~ 505 (792)
T KOG1963|consen 427 DGEVSLKFWQYNPNSKTFILNTKI-NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG 505 (792)
T ss_pred CceEEEEEEEEcCCcceeEEEEEE-ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee
Confidence 235788887632 222222 2234444555555 3333 37889999999999988332 122222
Q ss_pred ecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 481 KVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 481 ~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.-|..++++++|+.||..| ++|.|++|.+||+
T Consensus 506 sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 506 SYHKTPITALCFSQDGSLL-AVSFDDTITIWDY 537 (792)
T ss_pred ccccCcccchhhcCCCcEE-EEecCCEEEEecC
Confidence 2478899999999999655 5667889999996
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2e-21 Score=191.51 Aligned_cols=254 Identities=20% Similarity=0.293 Sum_probs=197.9
Q ss_pred cccCceeEEEECCCCCE----EEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCC-CEEEEEeCC
Q 010324 211 GTKSHAECARFSPDGQF----LVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS-EMLASGSQD 285 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~----la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d 285 (513)
....+-+.++|.+.|.. ||.|..||.| ++||...- +.........+...|.+.|..+.|++.. +.||+|+.|
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I-~ly~p~~~--~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNI-VLYDPASI--IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCce-EEecchhh--ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC
Confidence 44556788999997776 8999999999 59998752 1112223334556699999999999955 599999999
Q ss_pred CcEEEEEcCCcceeeec-ccccccCeEEEEEccC-CCEEEEeeCCCcEEEEecCCCceeeEeccccc--ceeEEEEccCC
Q 010324 286 GKIKVWRIRSGQCLRRL-ERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEFRGHSS--YVNDAIFTNDG 361 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~ 361 (513)
|.|.|||+...+.-... .....+.|.+++|+.. ...|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+.
T Consensus 139 geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC
Confidence 99999999876544444 2235678999999974 45678899999999999999988887776544 57899999976
Q ss_pred C-EEEEEeCCC---cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEee
Q 010324 362 S-RVVTASSDC---TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFS 436 (513)
Q Consensus 362 ~-~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~ 436 (513)
. .+++++.|. .|.+||+|.-. .+.....+|...|.++.|++.++.++++++.|+.|.+|+.+ ++.+..+.
T Consensus 219 aTql~~As~dd~~PviqlWDlR~as-----sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFAS-----SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccC-----CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 4 566666553 59999998643 22223348899999999999999999999999999999998 55555554
Q ss_pred cCccCCCcEEEEEECCCCC-EEEEEecCceEEEEECCCce
Q 010324 437 SGKREGGDFVAACVSPKGE-WIYCVGEDRNLYCFSHQSGK 475 (513)
Q Consensus 437 ~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~ 475 (513)
. .+..+..+.|.|... .+++++-||.|.|+.+....
T Consensus 294 ~---~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 A---QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred C---CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 4 456788999999776 77888899999999987654
No 169
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=5.5e-21 Score=163.06 Aligned_cols=250 Identities=21% Similarity=0.373 Sum_probs=186.8
Q ss_pred cccCceeEEEECCC----CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC-CCEEEEEeCC
Q 010324 211 GTKSHAECARFSPD----GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-SEMLASGSQD 285 (513)
Q Consensus 211 ~h~~~v~~~~~s~~----g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d 285 (513)
.|...-..++|+-| ..++|+|+.-|.|+ |.|+.+++.... +.+|...|+.+.+.|+ .++++++|.|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIr-Vid~~~~~~~~~--------~~ghG~sINeik~~p~~~qlvls~SkD 157 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIR-VIDVVSGQCSKN--------YRGHGGSINEIKFHPDRPQLVLSASKD 157 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEE-EEecchhhhccc--------eeccCccchhhhcCCCCCcEEEEecCC
Confidence 36666777888753 45899999999998 999998876654 4569999999999995 4789999999
Q ss_pred CcEEEEEcCCcceeeecc--cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceee--------------------
Q 010324 286 GKIKVWRIRSGQCLRRLE--RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK-------------------- 343 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------------------- 343 (513)
.+|++|++++..++..+. .+|...|.++.|+++|.+|++++.|.++++|++...+...
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP 237 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence 999999999999988775 3789999999999999999999999999999997322100
Q ss_pred --------EecccccceeEEEEccCCCEEEEEeCCCcEEEEeC-CCCceeEeecCCCC---------CCCCCceeeEEEe
Q 010324 344 --------EFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL-KSTDCLQTFKPPPP---------LRGGDASVNSVHL 405 (513)
Q Consensus 344 --------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~---------~~~~~~~v~~~~~ 405 (513)
+-.-|...|-|+.|- |+++++-+.++.|..|.. .-++.+....++.. ....+......++
T Consensus 238 ~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 238 KTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred ccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee
Confidence 112355666666665 578999999999999987 22222222222111 1111222333445
Q ss_pred cCCCCCeEEEEcCCCcEEEEEccCeE--EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 406 FPKNPDHIVVCNKTSSIYIMTLQGQV--VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 406 ~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
.|.. ..++.+...|.+++||++... ..........+..|...+|+.||.+|+..++|+.|.-||..
T Consensus 316 d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 316 DPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 5554 789999999999999998332 22222333446678899999999999999999999999964
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=174.52 Aligned_cols=267 Identities=19% Similarity=0.324 Sum_probs=206.2
Q ss_pred CCCCCCCceeeccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEecccccccccccc
Q 010324 175 GLLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQY 254 (513)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~ 254 (513)
|..|.|.+.-+..+. ..-+.|.......++++ +|++.|.|++|+.||+.+|+|+.|..| ++|+..-... +.+
T Consensus 19 afkPDGsqL~lAAg~---rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~V-I~W~~klEG~---LkY 90 (1081)
T KOG1538|consen 19 AFKPDGTQLILAAGS---RLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSV-IIWTSKLEGI---LKY 90 (1081)
T ss_pred EECCCCceEEEecCC---EEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeE-EEecccccce---eee
Confidence 444566555554432 33455667778888888 999999999999999999999999999 6998653322 222
Q ss_pred ccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEE
Q 010324 255 QADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIH 334 (513)
Q Consensus 255 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 334 (513)
.|.+.|.||.|+|-...|++|+-+ ..-+|...... +.+. .....+.+++|..||.+++.|-.+|+|.+-
T Consensus 91 -------SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 91 -------SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred -------ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhh--hhheeEEEeeecCCCcEEEEeccCceEEee
Confidence 399999999999999999999765 57788865433 2222 346779999999999999999999999998
Q ss_pred ecCCCceeeEec---ccccceeEEEEccCC-----CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEec
Q 010324 335 GLKSGKLLKEFR---GHSSYVNDAIFTNDG-----SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLF 406 (513)
Q Consensus 335 d~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (513)
+- +++....+. +.+++|.+++|+|.. ..+++.....++.+|.+.. +.+..- ........++.+.
T Consensus 160 Nk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~------r~L~FdP~CisYf 231 (1081)
T KOG1538|consen 160 NK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKD------RALNFDPCCISYF 231 (1081)
T ss_pred cC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeeccc------ccCCCCchhheec
Confidence 74 555544444 367899999999953 3677888888888888753 322211 1234566788999
Q ss_pred CCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 407 PKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 407 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
+++ .+++.|+.++.+.+|..+|-.+.++.. ....+..++..|++++++.|+.||+|..|++.
T Consensus 232 ~NG-Ey~LiGGsdk~L~~fTR~GvrLGTvg~---~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 232 TNG-EYILLGGSDKQLSLFTRDGVRLGTVGE---QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cCC-cEEEEccCCCceEEEeecCeEEeeccc---cceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 988 899999999999999998877776655 35679999999999999999999999999875
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=4.6e-20 Score=161.17 Aligned_cols=207 Identities=19% Similarity=0.263 Sum_probs=161.6
Q ss_pred ccccCCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCcc-------eeeecccccccCeEEEEEccC-CCEEEEeeCCC
Q 010324 259 TFMMHDETVLCIEFSR-DSEMLASGSQDGKIKVWRIRSGQ-------CLRRLERAHSEGVTSLVFSRD-GSQILSTSFDS 329 (513)
Q Consensus 259 ~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg 329 (513)
.+.||.++|..++|+| +...||+||.|.+|.||.+..+. ++..+. +|...|..++|+|. .+.|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhccCCc
Confidence 5678999999999999 66789999999999999987543 344554 89999999999994 56788999999
Q ss_pred cEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCc-eeeEEEecCC
Q 010324 330 TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA-SVNSVHLFPK 408 (513)
Q Consensus 330 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 408 (513)
+|.+|++.+|+.+.++. |...|.++.|+.||.++++++.|..|+|||.++++.+..-. +|.+ ....+.|..+
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~------~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV------AHEGAKPARAIFLAS 227 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc------cccCCCcceeEEecc
Confidence 99999999999998888 99999999999999999999999999999999999877653 2322 3344556665
Q ss_pred CCCeEEEEc---CCCcEEEEEccCeEE-EEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCce
Q 010324 409 NPDHIVVCN---KTSSIYIMTLQGQVV-KSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGK 475 (513)
Q Consensus 409 ~~~~l~~~~---~~~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~ 475 (513)
+ .++.+|. .+..+.+||...-.. ..+.... ....+.---+.+|.+.++.++ .|+.|+.|.+.+..
T Consensus 228 g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 228 G-KIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred C-ceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 5 4444443 467899999872211 1111111 234466667799998887666 89999999998765
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=2.3e-18 Score=169.14 Aligned_cols=283 Identities=31% Similarity=0.535 Sum_probs=223.8
Q ss_pred eccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccc-cccccccccccccccCC-ccEEEEEE-cCCCC-EEEEEeC
Q 010324 209 KFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGK-LKKDLQYQADETFMMHD-ETVLCIEF-SRDSE-MLASGSQ 284 (513)
Q Consensus 209 ~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~-~~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~~-~l~s~~~ 284 (513)
..+|...+.++.|.+.+..++.++.|+.+. +|+...+. ....+ .++. ..+..+.+ ++++. .++..+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIK-LWDLDNGEKLIKSL--------EGLHDSSVSKLALSSPDGNSILLASSS 131 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEE-EEEcCCCceeEEEE--------eccCCCceeeEEEECCCcceEEeccCC
Confidence 348999999999999999999999999996 99998875 22222 2222 36777777 88887 5555444
Q ss_pred -CCcEEEEEcCC-cceeeecccccccCeEEEEEccCCCEEEEeeC-CCcEEEEecCCCceeeEecccccceeEEEEccCC
Q 010324 285 -DGKIKVWRIRS-GQCLRRLERAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG 361 (513)
Q Consensus 285 -dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 361 (513)
|+.+.+|+... ......+. .|...|..++|+|++..+++++. |+.+++|++..+..+..+..|...|.+++|+|++
T Consensus 132 ~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 132 LDGTVKLWDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210 (466)
T ss_pred CCccEEEEEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCc
Confidence 99999999987 66666665 79999999999999998888886 9999999999888899999999999999999999
Q ss_pred C-EEEEEeCCCcEEEEeCCCCceeEe-ecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeE--EEEeec
Q 010324 362 S-RVVTASSDCTVKVWDLKSTDCLQT-FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV--VKSFSS 437 (513)
Q Consensus 362 ~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~ 437 (513)
. .+++++.|+.|++||...+..... +. .+.... ...|+|++ ..+++++.++.+++|+..... ....
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~------~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~-- 280 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLS------GHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTL-- 280 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecC------CCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEE--
Confidence 8 555558999999999887766653 33 333333 22788887 788899999999999998332 3333
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeee--cccCCeEEEEEcCCCCEEEEE-ECCCeEEecc
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK--VHEKDVIGVTHHPHRNLLATY-GEDCTMKLWK 512 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~-~~dg~i~iWd 512 (513)
..+...+.++.++|++..+++++.|+.+.+|+..+........ .|...+..+.|.+++..++.+ ..|+.+.+|+
T Consensus 281 -~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 281 -SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred -ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 3346778899999999999889888999999998887776665 788889999994332455555 6888999886
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=2.4e-20 Score=162.87 Aligned_cols=213 Identities=22% Similarity=0.324 Sum_probs=171.2
Q ss_pred cccCceeEEEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEEEeCCCcE
Q 010324 211 GTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKI 288 (513)
Q Consensus 211 ~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i 288 (513)
||+++|..++|+| +...+|+||.|.+|. ||.+-.+.+...+. .+...+.||...|.-++|+| -.+.|++++.|.+|
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~-vW~IPe~~l~~~lt-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVM-VWQIPENGLTRDLT-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEE-EEECCCcccccCcc-cceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 9999999999999 778999999999996 99998877666654 56678899999999999999 45688999999999
Q ss_pred EEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccccc-ceeEEEEccCCCEEEEE
Q 010324 289 KVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS-YVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 289 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~ 367 (513)
.+||+.+|+.+.++. |...|.++.|+.||.+|++++.|..|+|||.++++.+..-.+|.+ .-..+.|-.+|..+-||
T Consensus 157 ~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 999999999888875 999999999999999999999999999999999999998877765 45566788888844444
Q ss_pred e---CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeE
Q 010324 368 S---SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV 431 (513)
Q Consensus 368 ~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 431 (513)
. .+..+.+||..+.+....+... .....|.---+.++..-..++|-.|+.|+.|.+....
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~el----DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQEL----DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccccceeccCcccccCcceeEEe----ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 3 4778999998765432222111 1223444445566664556667789999999998543
No 174
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=3.5e-20 Score=171.35 Aligned_cols=253 Identities=18% Similarity=0.263 Sum_probs=178.1
Q ss_pred eccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEEEeCCCc
Q 010324 209 KFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGK 287 (513)
Q Consensus 209 ~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~ 287 (513)
...|.+.|..+.|-|....|++++.|.+++ .||+.++++... ..+.||...|.+++|.| +...+++|+.||.
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r-~Wdvk~s~l~G~------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ 168 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIR-PWDVKTSRLVGG------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGE 168 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceee-eeeeccceeecc------eeecccccccchhhhccCCCcceeeccCCCc
Confidence 348999999999999778999999999998 999998876542 24567999999999999 5568999999999
Q ss_pred EEEEEcCCcce--------------------eeecc------cccccCeEE---EEEccCCCEEEEeeC-CCcEEEEecC
Q 010324 288 IKVWRIRSGQC--------------------LRRLE------RAHSEGVTS---LVFSRDGSQILSTSF-DSTARIHGLK 337 (513)
Q Consensus 288 i~vwd~~~~~~--------------------~~~~~------~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~i~d~~ 337 (513)
|.|||++-... ..... ..+...|.+ +.+..|...|++++. |+.|+|||++
T Consensus 169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR 248 (720)
T ss_pred EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence 99999863220 00000 123334444 555568889998887 9999999998
Q ss_pred CCceeeE--------eccc---ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCcee--EeecCCCCCCCCCceeeEEE
Q 010324 338 SGKLLKE--------FRGH---SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCL--QTFKPPPPLRGGDASVNSVH 404 (513)
Q Consensus 338 ~~~~~~~--------~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~ 404 (513)
....... +..| ...+.++.....|.+|++.+.|+.|++||+.+.... ..+.... ...-...-.
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~----~~sf~vks~ 324 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL----NSSFYVKSE 324 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc----cceeeeeee
Confidence 6543322 2222 335778888888999999999999999999865421 1111100 011112234
Q ss_pred ecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCC-CCEEEEEecCceEEEEECCCc
Q 010324 405 LFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPK-GEWIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 405 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~ 474 (513)
.+|++ ..+++++.|...++|.+..-...... ...|...+++++|.|. -.-++++++|..+.+|++..+
T Consensus 325 lSpd~-~~l~SgSsd~~ayiw~vs~~e~~~~~-l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 325 LSPDD-CSLLSGSSDEQAYIWVVSSPEAPPAL-LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cCCCC-ceEeccCCCcceeeeeecCccCChhh-hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 56666 89999999999999999833221111 1124456888888553 233566699999999998654
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=1.8e-18 Score=162.85 Aligned_cols=271 Identities=15% Similarity=0.195 Sum_probs=175.2
Q ss_pred EEEecCCeEEEEEeccc-cccccccccccccccccCCccEEEEEEcCCCCEEEEEe-CCCcEEEEEcC-Ccce--eeecc
Q 010324 229 VSCSFDGFIEVVWDYLS-GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS-QDGKIKVWRIR-SGQC--LRRLE 303 (513)
Q Consensus 229 a~g~~dg~i~~iwd~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~--~~~~~ 303 (513)
++...++.|. +|++.+ ++.. .+ ..+. +.+....++++|++++|++++ .++.|.+|++. ++.. +...
T Consensus 6 ~~~~~~~~I~-~~~~~~~g~l~-~~-----~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~- 76 (330)
T PRK11028 6 IASPESQQIH-VWNLNHEGALT-LL-----QVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES- 76 (330)
T ss_pred EEcCCCCCEE-EEEECCCCcee-ee-----eEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-
Confidence 3446789996 999964 3221 11 1111 345677899999999987765 47899999986 3432 2222
Q ss_pred cccccCeEEEEEccCCCEEEEeeC-CCcEEEEecCC-Cc---eeeEecccccceeEEEEccCCCEEEEEe-CCCcEEEEe
Q 010324 304 RAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKS-GK---LLKEFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWD 377 (513)
Q Consensus 304 ~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd 377 (513)
........++|+|+++++++++. ++.|.+|++.+ +. .+..+. +...+.+++++|+++++++++ .++.|.+||
T Consensus 77 -~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d 154 (330)
T PRK11028 77 -PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFT 154 (330)
T ss_pred -cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEE
Confidence 23345678999999999988765 78999999964 22 222222 223467789999999886655 569999999
Q ss_pred CCCCceeEeec-CCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC--eE---EEEeecCc---cCCCcEEEE
Q 010324 378 LKSTDCLQTFK-PPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--QV---VKSFSSGK---REGGDFVAA 448 (513)
Q Consensus 378 ~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~--~~---~~~~~~~~---~~~~~~~~~ 448 (513)
+.+...+.... ..... ........+.++|++...+++...++.|.+|+++. .. ...+.... ........+
T Consensus 155 ~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i 233 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI 233 (330)
T ss_pred ECCCCcccccCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE
Confidence 98633221100 00000 11234667899998844444445599999999972 22 22222111 111223468
Q ss_pred EECCCCCEEEEEe-cCceEEEEECCCce----eeEeeecccCCeEEEEEcCCCCEEEEEEC-CCeEEecc
Q 010324 449 CVSPKGEWIYCVG-EDRNLYCFSHQSGK----LEHLMKVHEKDVIGVTHHPHRNLLATYGE-DCTMKLWK 512 (513)
Q Consensus 449 ~~s~~~~~l~~g~-~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-dg~i~iWd 512 (513)
.++|+|++++++. .++.|.+|++.... .+..... ......+.++|+|++|++++. +++|.+|+
T Consensus 234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 234 HITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 8999999999986 47899999986533 2222222 124568999999999987774 89999985
No 176
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.5e-20 Score=166.34 Aligned_cols=208 Identities=20% Similarity=0.369 Sum_probs=150.3
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC--CCCEEEEEeCCCcE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGSQDGKI 288 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~i 288 (513)
||.+.|+|++|+.+|.+|++|+.|-.+ +|||....++...+. .||...|.++.|-| +.+.+++|..|..|
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~-ivWd~~~~KllhsI~-------TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRL-IVWDPFEYKLLHSIS-------TGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceE-Eeecchhcceeeeee-------cccccceeEEeeeccCCCeEEEeccCcceE
Confidence 999999999999999999999999999 599998766655443 46999999999999 66789999999999
Q ss_pred EEEEcCCc----------ceeeecccccccCeEEEEEccCC-CEEEEeeCCCcEEEEecCCCceee----------Eecc
Q 010324 289 KVWRIRSG----------QCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKLLK----------EFRG 347 (513)
Q Consensus 289 ~vwd~~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~ 347 (513)
+++|+... .....+. .|...|..++-.|++ ..+.+++.||+++-+|++...... .+..
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 99999742 1223333 788899999999988 778899999999999998642111 1111
Q ss_pred cccceeEEEEccC-CCEEEEEeCCCcEEEEeCCCCc------------------eeEeecCCCC--CCC-CC---ceeeE
Q 010324 348 HSSYVNDAIFTND-GSRVVTASSDCTVKVWDLKSTD------------------CLQTFKPPPP--LRG-GD---ASVNS 402 (513)
Q Consensus 348 ~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------------------~~~~~~~~~~--~~~-~~---~~v~~ 402 (513)
..-...++..+|. ..+|++|+.|-..++||.+... ++..+.+... ..+ .. ..++-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 2234678899995 4588999999999999954211 1111211111 000 01 12456
Q ss_pred EEecCCCCCeEEEEcCCCcEEEEEcc
Q 010324 403 VHLFPKNPDHIVVCNKTSSIYIMTLQ 428 (513)
Q Consensus 403 ~~~~~~~~~~l~~~~~~~~i~i~d~~ 428 (513)
+.|+|++ ..+++.-....|+++|+.
T Consensus 279 vtfnpNG-tElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 279 VTFNPNG-TELLVSWGGEHVYLFDVN 303 (758)
T ss_pred EEECCCC-cEEEEeeCCeEEEEEeec
Confidence 7788888 444455555577777765
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.7e-19 Score=175.95 Aligned_cols=289 Identities=18% Similarity=0.275 Sum_probs=210.3
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC--CCCEEEEEeCCCcE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGSQDGKI 288 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~i 288 (513)
+.......+.|+|-...++++.....|+ +||.+.++....+.... .....|+.+.+-. |..++++|+.||.|
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~-vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D~aLlLtas~dGvI 1135 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIR-VWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQDDALLLTASSDGVI 1135 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEE-EEecccCceeccccCCC-----CCCCccceeeeecccchhheeeeccCceE
Confidence 4444567789999889999998788885 99999988766554211 1456789999876 56689999999999
Q ss_pred EEEEcC-Cc----ceeeecc------cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecc-cccceeEEE
Q 010324 289 KVWRIR-SG----QCLRRLE------RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG-HSSYVNDAI 356 (513)
Q Consensus 289 ~vwd~~-~~----~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~ 356 (513)
+||+-- ++ +.+..+. .+..+.=.-+.|.....+|++++.-..|+|||......+..+.. ....|+++.
T Consensus 1136 RIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1136 RIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred EEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence 999742 21 2222111 11111124567888777788877789999999987777766653 344577665
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEeCCCCce---eEeecCCCCCCCCCce--eeEEEecCCCCCeEEEEcCCCcEEEEEccCe
Q 010324 357 FTN-DGSRVVTASSDCTVKVWDLKSTDC---LQTFKPPPPLRGGDAS--VNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ 430 (513)
Q Consensus 357 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 430 (513)
-+- .|+.+++|..||.|++||.+.... +..+. .|... |..+.+.+.+-..+++++.+|.|++||++..
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R------~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR------EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCccccceeec------ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 543 579999999999999999986543 22222 33334 8899999887678999999999999999964
Q ss_pred EEEEeecCc---cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc-------cCCeEEEEEcCCCCEEE
Q 010324 431 VVKSFSSGK---REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH-------EKDVIGVTHHPHRNLLA 500 (513)
Q Consensus 431 ~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~~~~~p~~~~l~ 500 (513)
....+.... ..++..+++..+++...+|+|+. +.|.||++. |+.+..++.+ .+.+.|++|||..-++|
T Consensus 1290 ~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhh
Confidence 332222221 12335889999999999999998 999999975 4444444322 35689999999999999
Q ss_pred EEECCCeEEeccC
Q 010324 501 TYGEDCTMKLWKP 513 (513)
Q Consensus 501 s~~~dg~i~iWdp 513 (513)
+|+.|.+|.||.+
T Consensus 1368 aG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1368 AGSADSTVSIYSC 1380 (1387)
T ss_pred hccCCceEEEeec
Confidence 9999999999864
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=1.8e-17 Score=162.66 Aligned_cols=297 Identities=31% Similarity=0.495 Sum_probs=226.2
Q ss_pred ccccCc-ccceeeeeccccCceeEEEECCCCCEEEEEec-CCeEEEEEeccccccccccccccccccccCCccEEEEEEc
Q 010324 196 VEDMYP-TTLSHTIKFGTKSHAECARFSPDGQFLVSCSF-DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS 273 (513)
Q Consensus 196 ~~~~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~-dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 273 (513)
.++... ......+. +|...|.+++|+|++.++++++. |+.++ +|+...+.... .+.+|...|.+++|+
T Consensus 138 ~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~v~~~~~~ 207 (466)
T COG2319 138 LWDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIK-LWDLRTGKPLS--------TLAGHTDPVSSLAFS 207 (466)
T ss_pred EEEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceE-EEEcCCCceEE--------eeccCCCceEEEEEc
Confidence 344333 33444444 89999999999999999999986 99997 99998744443 334489999999999
Q ss_pred CCCC-EEEEEeCCCcEEEEEcCCcceee-ecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce-eeEeccccc
Q 010324 274 RDSE-MLASGSQDGKIKVWRIRSGQCLR-RLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL-LKEFRGHSS 350 (513)
Q Consensus 274 ~~~~-~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~ 350 (513)
|++. .+++++.|+.|++||...+.... .+. .|.... ...|+|++..+++++.|+.+++|+.+.... ...+..|..
T Consensus 208 ~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 285 (466)
T COG2319 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285 (466)
T ss_pred CCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc
Confidence 9998 55555899999999988777777 454 676665 448999998999999999999999987664 444466788
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE-cCCCcEEEEEccC
Q 010324 351 YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC-NKTSSIYIMTLQG 429 (513)
Q Consensus 351 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~~~~i~i~d~~~ 429 (513)
.+.++.|+|++..+++++.|+.+.+||..+........ ...+...+..+.+ +.....++.+ ..++.+.+|+...
T Consensus 286 ~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----LKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee----ecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCC
Confidence 99999999988888889999999999998877655544 1234457888888 5322455555 6778999999985
Q ss_pred eEEEEeecCccCCCcEEEEEECCCCCEEEE-EecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeE
Q 010324 430 QVVKSFSSGKREGGDFVAACVSPKGEWIYC-VGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTM 508 (513)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i 508 (513)
.. ....... ...+..+.+++ ...++. +..++.+.+|+............+...+....+.+++..+++++.++.+
T Consensus 361 ~~-~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (466)
T COG2319 361 GK-PLKTLEG--HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTI 436 (466)
T ss_pred Cc-eeEEecC--CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcE
Confidence 44 1111111 11267888888 544444 6789999999999888777766554788999999999999999999999
Q ss_pred EeccC
Q 010324 509 KLWKP 513 (513)
Q Consensus 509 ~iWdp 513 (513)
++|+.
T Consensus 437 ~~~~~ 441 (466)
T COG2319 437 RLWDL 441 (466)
T ss_pred EEEec
Confidence 99974
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2e-18 Score=141.49 Aligned_cols=282 Identities=17% Similarity=0.261 Sum_probs=196.9
Q ss_pred eeEEEECCCCCEEEEEecCCeEEEEEecccccccccc--ccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010324 216 AECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDL--QYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI 293 (513)
Q Consensus 216 v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~ 293 (513)
|.+-+++|.+++|++|+.+|.|- +..+.+-...... .-.+.-...+|.++|+.++|. ..+|++|+ ||.|+=|..
T Consensus 13 vf~qa~sp~~~~l~agn~~G~ia-v~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIA-VLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEE-EEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 45568999999999999999995 8887532111110 011122346799999999998 45677776 699999976
Q ss_pred CCcce------eeec-ccc-----cccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCC
Q 010324 294 RSGQC------LRRL-ERA-----HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG 361 (513)
Q Consensus 294 ~~~~~------~~~~-~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 361 (513)
..... +... ... .-..|+++-..|..+.+++++.|+.++-||+++|+....+++|...|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 53221 1111 111 12468899999988888888889999999999999999999999999999986656
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEeecCCCCC---CC-CCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeec
Q 010324 362 SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPL---RG-GDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSS 437 (513)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 437 (513)
..+++|+.||++++||.++++++..+.+.... .. ....|.+++.+. . -++|+....+.+|.++.........
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---d-WlvCGgGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---D-WLVCGGGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---c-eEEecCCCceeEEeccCCCceEEEe
Confidence 67999999999999999999999887754321 11 223455555432 3 4456667789999999554443333
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCC-EEEEEECCCeEEec
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN-LLATYGEDCTMKLW 511 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iW 511 (513)
. ..++..+.|. ...++++++.+.|.-|.+. |.+....+......++..|+...- +|-.++....+.|.
T Consensus 245 i---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 245 I---PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred c---ccceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 2 2335556664 3468888888899999864 666666666556677777766553 44455666667664
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=2.8e-19 Score=171.67 Aligned_cols=267 Identities=18% Similarity=0.207 Sum_probs=193.3
Q ss_pred cccccCcccceeeeeccccCceeEEEECC-CCCEEEEEecCCeEEEEEeccccccc--cccccccccccccCCccEEEEE
Q 010324 195 DVEDMYPTTLSHTIKFGTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLK--KDLQYQADETFMMHDETVLCIE 271 (513)
Q Consensus 195 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~ 271 (513)
.+|+.... ......+.-...|.|+.|+| +..++|.|+.+|.| ++||+..+... ..+.. ....|..+|+.+.
T Consensus 225 ~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV-~lWD~~~~~~~~~s~ls~----~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 225 LVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQV-VLWDLRKGSDTPPSGLSA----LEVSHSEPVTAVV 298 (555)
T ss_pred EEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceE-EEEEccCCCCCCCccccc----ccccCCcCeEEEE
Confidence 34554443 22233346778999999999 67889999999999 59999877652 22221 2334899999999
Q ss_pred EcCCC--CEEEEEeCCCcEEEEEcCCccee------eec-----ccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecC
Q 010324 272 FSRDS--EMLASGSQDGKIKVWRIRSGQCL------RRL-----ERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLK 337 (513)
Q Consensus 272 ~~~~~--~~l~s~~~dg~i~vwd~~~~~~~------~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 337 (513)
|..+- .-+++++.||.|..|+++.-... ... .......+++++|.+ +...+++|+.+|.|..-+-.
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 98744 44999999999999987642221 000 012345688999988 56789999999998874322
Q ss_pred CC---c-----eeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeEeecCCCCCCCCCceeeEEEecCC
Q 010324 338 SG---K-----LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLK-STDCLQTFKPPPPLRGGDASVNSVHLFPK 408 (513)
Q Consensus 338 ~~---~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (513)
.. . ....+..|.++|.++.++|=+..++..+.|.+++||... ...++..+. .+...+++++|+|.
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~------~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD------SSPDYVTDVAWSPT 452 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh------hccceeeeeEEcCc
Confidence 21 1 233556688999999999977766666669999999977 444444333 34456999999999
Q ss_pred CCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 409 NPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 409 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
.+..++++..+|.+.+||+..................+.+.|+++|+.|++|...|.+.+|++..
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999999999999999998544433333333344566788899999999999999999999864
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=2.4e-18 Score=144.68 Aligned_cols=284 Identities=17% Similarity=0.244 Sum_probs=204.1
Q ss_pred eccccCceeEEEECC---CCCEEEEEec----CCeEEEEEec--cccccccccccccccccccCCccEEEEEEcCCC---
Q 010324 209 KFGTKSHAECARFSP---DGQFLVSCSF----DGFIEVVWDY--LSGKLKKDLQYQADETFMMHDETVLCIEFSRDS--- 276 (513)
Q Consensus 209 ~~~h~~~v~~~~~s~---~g~~la~g~~----dg~i~~iwd~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--- 276 (513)
.+...-.+.++.||. .+.+||.|+. .+.|. |-.+ .+++...... ..|.-+++.+.|.|+.
T Consensus 40 ~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvq-iv~ld~~s~e~~~~a~-------fd~~YP~tK~~wiPd~~g~ 111 (364)
T KOG0290|consen 40 TYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQ-IVQLDEDSGELVEDAN-------FDHPYPVTKLMWIPDSKGV 111 (364)
T ss_pred EecCCCceeeeccccCCCcceeEEEeeeccccCCeeE-EEEEccCCCceeccCC-------CCCCCCccceEecCCcccc
Confidence 345556788889984 3558899873 45565 4333 3444433222 2389999999999976
Q ss_pred --CEEEEEeCCCcEEEEEcCCcceee----ec----ccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCc---ee
Q 010324 277 --EMLASGSQDGKIKVWRIRSGQCLR----RL----ERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGK---LL 342 (513)
Q Consensus 277 --~~l~s~~~dg~i~vwd~~~~~~~~----~~----~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~ 342 (513)
++||+++ ..+++|.+...+... .+ ...+..++++..|+. +.+++.+++-|-+..|||+.++. ..
T Consensus 112 ~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vk 189 (364)
T KOG0290|consen 112 YPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVK 189 (364)
T ss_pred Ccchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccccee
Confidence 3566654 479999987422110 01 124567899999997 77889999999999999999873 35
Q ss_pred eEecccccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC-C
Q 010324 343 KEFRGHSSYVNDAIFTNDG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-S 420 (513)
Q Consensus 343 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-~ 420 (513)
..+-+|...|.+++|...+ ..+++.+.||.+++||++..+.-..+.... ....+...++|++.+++++++-..| .
T Consensus 190 TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p---~~~~pLlRLswnkqDpnymATf~~dS~ 266 (364)
T KOG0290|consen 190 TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP---SPSTPLLRLSWNKQDPNYMATFAMDSN 266 (364)
T ss_pred eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC---CCCCcceeeccCcCCchHHhhhhcCCc
Confidence 5677899999999999855 478899999999999999876443332221 1256788999999999998887665 5
Q ss_pred cEEEEEcc--CeEEEEeecCccCCCcEEEEEECCC-CCEEEEEecCceEEEEECCCcee------eEeeecccCCeEEEE
Q 010324 421 SIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPK-GEWIYCVGEDRNLYCFSHQSGKL------EHLMKVHEKDVIGVT 491 (513)
Q Consensus 421 ~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~~~ 491 (513)
.|.+.|++ ...+..+. .|.+.|..++|.|. ...|++++.|..+.+||+..... +..+. -.+.|+.+.
T Consensus 267 ~V~iLDiR~P~tpva~L~---~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~ 342 (364)
T KOG0290|consen 267 KVVILDIRVPCTPVARLR---NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQ 342 (364)
T ss_pred eEEEEEecCCCcceehhh---cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeee
Confidence 79999998 34444444 46788999999986 56899999999999999975322 22233 457899999
Q ss_pred EcC-CCCEEEEEECCCeEEe
Q 010324 492 HHP-HRNLLATYGEDCTMKL 510 (513)
Q Consensus 492 ~~p-~~~~l~s~~~dg~i~i 510 (513)
|+| .+..++.+.. +++.|
T Consensus 343 Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 343 WSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ecccCCCEEEEEec-CeeeE
Confidence 997 5667777753 44443
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.83 E-value=2.6e-18 Score=165.10 Aligned_cols=265 Identities=21% Similarity=0.254 Sum_probs=192.1
Q ss_pred CeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCcce-----eeeccccccc
Q 010324 235 GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKVWRIRSGQC-----LRRLERAHSE 308 (513)
Q Consensus 235 g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~ 308 (513)
+.+ ++|++.... ...+.+ .....|.|+.|+| +..+++.|+.+|.|.+||++.+.. +......|..
T Consensus 222 ~~~-~vW~~~~p~-~Pe~~~-------~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~ 292 (555)
T KOG1587|consen 222 GVL-LVWSLKNPN-TPELVL-------ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSE 292 (555)
T ss_pred ceE-EEEecCCCC-CceEEE-------ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCc
Confidence 356 699988762 211111 1568899999999 677888889999999999987654 2333357889
Q ss_pred CeEEEEEccCCC--EEEEeeCCCcEEEEecCCCcee------eEec------ccccceeEEEEcc-CCCEEEEEeCCCcE
Q 010324 309 GVTSLVFSRDGS--QILSTSFDSTARIHGLKSGKLL------KEFR------GHSSYVNDAIFTN-DGSRVVTASSDCTV 373 (513)
Q Consensus 309 ~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~------~~~~------~~~~~v~~~~~~~-~~~~l~~~~~dg~i 373 (513)
+++.+.|..+.. -+++++.||.|..|+++.-... .... .....+++++|.+ +...+++|+.+|.|
T Consensus 293 ~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 293 PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV 372 (555)
T ss_pred CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence 999999987544 4999999999999988643221 1111 1234588899987 55689999999998
Q ss_pred EEEeCCCCcee--EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC--eEEEEeecCccCCCcEEEEE
Q 010324 374 KVWDLKSTDCL--QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--QVVKSFSSGKREGGDFVAAC 449 (513)
Q Consensus 374 ~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~ 449 (513)
.--+-...+.. ..++.......|.++|+++.++|.....+.+++ |..+++|.-.- ..+..+.. +...+++++
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~---~~~~v~~va 448 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS---SPDYVTDVA 448 (555)
T ss_pred EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh---ccceeeeeE
Confidence 77443322211 223344455678999999999999977777777 99999999762 22222222 234589999
Q ss_pred ECCCCC-EEEEEecCceEEEEECCCc--eeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 450 VSPKGE-WIYCVGEDRNLYCFSHQSG--KLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 450 ~s~~~~-~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
|||... .++++..||.+.+||+... .++...+.+....+.+.|++.|+.|+.|+..|++.+|+
T Consensus 449 WSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 449 WSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 999875 5566668999999998643 45555555666778899999999999999999999986
No 183
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.83 E-value=3e-18 Score=169.87 Aligned_cols=295 Identities=16% Similarity=0.201 Sum_probs=204.1
Q ss_pred cccCceeEEEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 010324 211 GTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 289 (513)
Q Consensus 211 ~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 289 (513)
.|...|..++.++ ++.++++||.||+|+ +|+...-.... .......++.--.+++.++...+.++.+|.++.||.|.
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVK-vW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVK-VWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEE-EeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 6788888888776 559999999999999 99986432221 11122223333578899999999999999999999999
Q ss_pred EEEcCCc--c-----eeeecccccccCeEE-EEEcc-CCC-EEEEeeCCCcEEEEecCCCceeeEec--ccccceeEEEE
Q 010324 290 VWRIRSG--Q-----CLRRLERAHSEGVTS-LVFSR-DGS-QILSTSFDSTARIHGLKSGKLLKEFR--GHSSYVNDAIF 357 (513)
Q Consensus 290 vwd~~~~--~-----~~~~~~~~~~~~v~~-~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~ 357 (513)
+.++... + ..+.......+.+.+ -+|.. .+. .++.+...+.|..||++.......++ ...+.|++++.
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVI 1203 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEe
Confidence 9998752 1 111121112233333 33433 333 78888889999999998876655544 34578999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCC--CeEEEEc--CCCcEEEEEccCeEE-
Q 010324 358 TNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP--DHIVVCN--KTSSIYIMTLQGQVV- 432 (513)
Q Consensus 358 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~--~~~~i~i~d~~~~~~- 432 (513)
+|.++++++|+..|.+.+||++-+..+..+..+. ..++..+..+|..+ ...++++ ..+.+.+|++.+...
T Consensus 1204 dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~-----~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1204 DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA-----RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred cCCceEEEEecCCceEEEEEeecCceeecccCcc-----cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 9999999999999999999999998888877553 36777777776554 4444443 578899999984322
Q ss_pred EEeecC-c---------------cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceee-------------------
Q 010324 433 KSFSSG-K---------------REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE------------------- 477 (513)
Q Consensus 433 ~~~~~~-~---------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~------------------- 477 (513)
..+... . .+.-.....++...+.++.+|+.|..|+.||....+..
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~ 1358 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD 1358 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc
Confidence 222221 0 11112223444555678999999999999997542211
Q ss_pred -----------------------------Ee--------eecccCCeEEEEEcC-CCCEEEEEECCCeEEecc
Q 010324 478 -----------------------------HL--------MKVHEKDVIGVTHHP-HRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 478 -----------------------------~~--------~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iWd 512 (513)
.. -..|..+|+++++.. +..+|++++.||.|+||+
T Consensus 1359 ~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1359 LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 013666788888766 346899999999999996
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.83 E-value=1.8e-20 Score=178.23 Aligned_cols=284 Identities=18% Similarity=0.271 Sum_probs=214.1
Q ss_pred cCcccceeeeec-----cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEc
Q 010324 199 MYPTTLSHTIKF-----GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS 273 (513)
Q Consensus 199 ~~~~~~~~~~~~-----~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 273 (513)
..|.++.+.+++ ||.+.|.|+.|...|.++++|+.|..++ ||...++.... .+.||.+.|+.++.+
T Consensus 171 akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvK-iwS~et~~~lA--------s~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 171 AKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVK-IWSMETARCLA--------SCRGHSGDITDLAVS 241 (1113)
T ss_pred cCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceee-eeeccchhhhc--------cCCCCccccchhccc
Confidence 445555444432 9999999999999999999999999998 99998887665 445799999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe----c-cc
Q 010324 274 RDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF----R-GH 348 (513)
Q Consensus 274 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~-~~ 348 (513)
.++.++++++.|..|++|.+.++.++..+. +|++.|++++|+|-. +.+.||++++||.+ ....... + ..
T Consensus 242 ~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 242 SNNTMIAAASNDKVIRVWRLPDGAPVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhhhhcccCceEEEEecCCCchHHHHh-ccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCccc
Confidence 999999999999999999999999998887 999999999999964 77889999999987 1111111 1 12
Q ss_pred ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc
Q 010324 349 SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 428 (513)
Q Consensus 349 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~ 428 (513)
...+.++.|...+..++|++.|+.-..|.+..... +...+.-+..+.+...+.+++-.+-.+.+|++.
T Consensus 316 ~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 316 KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY 383 (1113)
T ss_pred ccceeeeeccccccccccccCCcccccchhhHhhh------------hccceEEEeccccccccceeeeeeeEeeeeecc
Confidence 34577788888888999999999888887653221 111122222222333566677777788899987
Q ss_pred CeEEEEeecCccCCCcEEEEEECCCCCE-EEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCe
Q 010324 429 GQVVKSFSSGKREGGDFVAACVSPKGEW-IYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCT 507 (513)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 507 (513)
...+...... +...+..+.++|-+.. ..+++.||...|||+-.|.+++.+.-..+.+..-+|+++|..++...+-|.
T Consensus 384 ~g~l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 384 TGQLLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQ 461 (1113)
T ss_pred cchhhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCc
Confidence 4332222222 3456778889886554 457789999999999999888766544567778899999998887777777
Q ss_pred EEec
Q 010324 508 MKLW 511 (513)
Q Consensus 508 i~iW 511 (513)
+.|.
T Consensus 462 l~i~ 465 (1113)
T KOG0644|consen 462 LYIL 465 (1113)
T ss_pred eEEe
Confidence 7764
No 185
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.9e-19 Score=154.59 Aligned_cols=251 Identities=17% Similarity=0.245 Sum_probs=194.9
Q ss_pred ccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC------CcceeeecccccccCeEEEEEccCCCEEEEeeCCCc
Q 010324 257 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR------SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDST 330 (513)
Q Consensus 257 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 330 (513)
.+.+.+|.+.|+++.|+.++++|++|+.|..+++|++. +.+++......|.+.|.|++|......+++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 34567899999999999999999999999999999985 456677776678899999999998999999999999
Q ss_pred EEEEecCCCceeeEecc--cccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeEeecCCCCCCCCCceeeEEEecC
Q 010324 331 ARIHGLKSGKLLKEFRG--HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD-CLQTFKPPPPLRGGDASVNSVHLFP 407 (513)
Q Consensus 331 i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (513)
|...|+.+.+.+..+.. ..+.|..+..+|-.+.|++.+.+|.|.+||.+... ....+.+ ........++.|+|
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~----AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP----ANSGKNFYTAEFHP 204 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee----cCCCccceeeeecC
Confidence 99999999988877753 24589999999999999999999999999998755 2222211 12345678899999
Q ss_pred CCCCeEEEEcCCCcEEEEEccCeEEEEeec-----CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeec
Q 010324 408 KNPDHIVVCNKTSSIYIMTLQGQVVKSFSS-----GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV 482 (513)
Q Consensus 408 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 482 (513)
..+.++++.+..+-+-+||.+......+.. ...........-|+|+|..+.+--....-.+||+.+.++...-..
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 999999999999999999998433222211 111223446788999999888777666667788877544322222
Q ss_pred cc-------CCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 483 HE-------KDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 483 h~-------~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
|. ..+.+++|-.+.. +++|+++-.|++|+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWK 320 (609)
T ss_pred CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEe
Confidence 32 2467788876544 89999999999997
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.5e-18 Score=151.21 Aligned_cols=196 Identities=19% Similarity=0.251 Sum_probs=152.0
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCC
Q 010324 311 TSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPP 390 (513)
Q Consensus 311 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 390 (513)
.+++|+++|..+++|+.||++++|+..+...+.....|...|.++.|+|||++|++.+.| ..+||+.+++..+....+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 689999999999999999999999988888888888899999999999999999999999 8999999999776665532
Q ss_pred CCCCCCCceeeEEEecCCC--CC-eEEEE-cCCCcEEEEEcc---CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC
Q 010324 391 PPLRGGDASVNSVHLFPKN--PD-HIVVC-NKTSSIYIMTLQ---GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED 463 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~~~~~--~~-~l~~~-~~~~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 463 (513)
..+.....+.|..++ +. ++++. ...+.|..|++. +...-...........+.+++++++|++++.|+.|
T Consensus 227 ----~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 227 ----SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred ----ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 334455566666543 12 22222 334567777664 11111111111223468999999999999999999
Q ss_pred ceEEEEECCCceeeEee-ecccCCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 464 RNLYCFSHQSGKLEHLM-KVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 464 g~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
|.|.|++..+-+.+... +.|...|+.+.|+|+.+++++.+.|....+-
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 99999999988877655 4799999999999999999999888877653
No 187
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=1.1e-18 Score=146.51 Aligned_cols=221 Identities=18% Similarity=0.253 Sum_probs=171.8
Q ss_pred ccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEecccccc-ccccccccccccccCCccEEEEEEcC--CCCE
Q 010324 202 TTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKL-KKDLQYQADETFMMHDETVLCIEFSR--DSEM 278 (513)
Q Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~ 278 (513)
-.+...+...+-+.|.|+.|.|++..+|+-. |..| .+|+++.+.. ...+.... -.+|....++-+|+| +|+.
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i-~l~~l~ess~~vaev~ss~---s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNI-VLWSLDESSKIVAEVLSSE---SAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCce-EEEEcccCcchheeecccc---cccccceecccccCCCCccce
Confidence 3344455556667999999999999999887 6777 4999988765 22222211 112677788899999 7888
Q ss_pred EEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCC-EEEEeeCCCcEEEEecCCC-ceeeEecccccceeEEE
Q 010324 279 LASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS-QILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAI 356 (513)
Q Consensus 279 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~ 356 (513)
+++.+ |+++..||+++..+...+...|...|..+.|+|+.. +|++|+.||.|++||.+.. .++..+.+|...|.++.
T Consensus 187 v~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 187 VATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred EEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 88764 889999999999999999989999999999999765 5778999999999999865 57889999999999999
Q ss_pred EccC-CCEEEEEeCCCcEEEEeCCCCceeEeec-------------------C----CCCCCCCCceeeEEEecCCCCCe
Q 010324 357 FTND-GSRVVTASSDCTVKVWDLKSTDCLQTFK-------------------P----PPPLRGGDASVNSVHLFPKNPDH 412 (513)
Q Consensus 357 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------~----~~~~~~~~~~v~~~~~~~~~~~~ 412 (513)
|+|. ..++++|+.|..|.+|...+-.....+. . ......|+..|++++|+..++-.
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 9994 4688899999999999764322111110 0 01234578899999999999999
Q ss_pred EEEEcCCCcEEEEEcc
Q 010324 413 IVVCNKTSSIYIMTLQ 428 (513)
Q Consensus 413 l~~~~~~~~i~i~d~~ 428 (513)
+++-+.||++.|-.+.
T Consensus 346 FASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 346 FASLSYDGRVIISSVP 361 (370)
T ss_pred EEEeccCceEEeecCC
Confidence 9999999998876654
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=1.9e-18 Score=156.82 Aligned_cols=268 Identities=14% Similarity=0.152 Sum_probs=191.5
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEecccccccccccccccccc-ccCCccEEEEEEc--CCCCEEEEEeCCCc
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETF-MMHDETVLCIEFS--RDSEMLASGSQDGK 287 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~--~~~~~l~s~~~dg~ 287 (513)
.|...|.|+.|+.+...+.+++.+..+. .||+.+.... .....+.... ..| +....-- .....++.++.||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~-~~~~~~~s~~-~~~~p~df~pt~~h---~~~rs~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFK-WSDVSRDSVE-VAKLPDDFVPTDMH---LGGRSSGGGKGSDTLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEE-eecccchhhh-hhhCCcccCCcccc---ccccccCCCCCcceEEEEcCCce
Confidence 5666677999999888777777665553 5565543321 1111110000 001 1111100 13357888899999
Q ss_pred EEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEE
Q 010324 288 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 288 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 367 (513)
+.+.+ +.++....+. .|.+.+.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|.|++|.|+.+.++.+
T Consensus 87 f~il~-k~~rVE~sv~-AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 87 FVILN-KSARVERSIS-AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEEec-ccchhhhhhh-hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 99988 6677777776 8999999999999999999999999999998 5776666666677889999999988766655
Q ss_pred eCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEE
Q 010324 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVA 447 (513)
Q Consensus 368 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 447 (513)
.. +.+.|=.+.....+-.+. +|++-|.++.|++.+ +++++|+.|-..++||..|..+-.- ..+..++++
T Consensus 164 ~g-~h~~IKpL~~n~k~i~Wk------AHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~Lf~S---~~~ey~ITS 232 (737)
T KOG1524|consen 164 QG-GHISIKPLAANSKIIRWR------AHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGANLFTS---AAEEYAITS 232 (737)
T ss_pred cC-CeEEEeecccccceeEEe------ccCcEEEEeecCccc-cceeecCCceeEEeecccCcccccC---Chhccceee
Confidence 43 456665555444333333 789999999999988 9999999999999999998765433 346778999
Q ss_pred EEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 448 ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 448 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
++|.|+ +..+.++. ++.+ .-+...+.|..++|++||..++.|+..|.+.+
T Consensus 233 va~npd-~~~~v~S~-nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSY-NTAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeccc-cceeeeee-eeee-----------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 999999 44444442 2222 22235678999999999999999999887753
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=4.7e-20 Score=175.43 Aligned_cols=238 Identities=21% Similarity=0.370 Sum_probs=190.4
Q ss_pred cccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEe
Q 010324 256 ADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHG 335 (513)
Q Consensus 256 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 335 (513)
..+.+.||.+.|.|..|...|.++++|+.|..++||..+++.++.... +|.+.|+.++.+.+..++++++.|..|++|.
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEe
Confidence 345677899999999999999999999999999999999999999997 9999999999999999999999999999999
Q ss_pred cCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE
Q 010324 336 LKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV 415 (513)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 415 (513)
+.++.++..+.+|.+.|++++|+|-. +.+.||++++||.+ ...... .+.........-+.++.+...+ ..+.+
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y-~prp~~~~~~~~~~s~~~~~~~-~~f~T 333 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIY-VPRPLKFTEKDLVDSILFENNG-DRFLT 333 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-cccccc-CCCCCCcccccceeeeeccccc-ccccc
Confidence 99999999999999999999999954 77889999999998 222222 2211112233445555555544 77888
Q ss_pred EcCCCcEEEEEcc---CeEEEEeecCccCCCcEEEEEECCC-CCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEE
Q 010324 416 CNKTSSIYIMTLQ---GQVVKSFSSGKREGGDFVAACVSPK-GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVT 491 (513)
Q Consensus 416 ~~~~~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 491 (513)
++.++.-..|.+. .+...... +..+.+ ..+.+++-.+-.+++|++.+|...+.+.+|...+..+.
T Consensus 334 gs~d~ea~n~e~~~l~~~~~~lif-----------~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd 402 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWRSNLLIF-----------VTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLD 402 (1113)
T ss_pred ccCCcccccchhhHhhhhccceEE-----------EeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeee
Confidence 9999888877765 11111111 111111 24566666788899999999999999999999999999
Q ss_pred EcC-CCCEEEEEECCCeEEecc
Q 010324 492 HHP-HRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 492 ~~p-~~~~l~s~~~dg~i~iWd 512 (513)
+|| +.....+++.||...|||
T Consensus 403 ~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 403 VHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred ecCCCcHhhhhccCCCceEeee
Confidence 999 556667999999999998
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=6.3e-17 Score=152.33 Aligned_cols=249 Identities=16% Similarity=0.221 Sum_probs=163.1
Q ss_pred ccCceeEEEECCCCCEEEEEe-cCCeEEEEEeccc-cccccccccccccccccCCccEEEEEEcCCCCEEEEEeC-CCcE
Q 010324 212 TKSHAECARFSPDGQFLVSCS-FDGFIEVVWDYLS-GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-DGKI 288 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~-~dg~i~~iwd~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~i 288 (513)
+.+....++++|++++|++++ .++.|. +|++.. +.... .. ... .......++|+|+++++++++. ++.|
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~-~~~~~~~g~l~~-~~-----~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v 104 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVL-SYRIADDGALTF-AA-----ESP-LPGSPTHISTDHQGRFLFSASYNANCV 104 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEE-EEEECCCCceEE-ee-----eec-CCCCceEEEECCCCCEEEEEEcCCCeE
Confidence 345677899999999987765 477884 899863 33211 11 000 2234678999999999988865 7899
Q ss_pred EEEEcCC-cce---eeecccccccCeEEEEEccCCCEEEEee-CCCcEEEEecCCCceeeE-----ec-ccccceeEEEE
Q 010324 289 KVWRIRS-GQC---LRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKSGKLLKE-----FR-GHSSYVNDAIF 357 (513)
Q Consensus 289 ~vwd~~~-~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-----~~-~~~~~v~~~~~ 357 (513)
.+|++.+ +.. +..+ .+.....+++++|+++++++++ .++.|.+||+.+...+.. .. ........+.|
T Consensus 105 ~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~ 182 (330)
T PRK11028 105 SVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF 182 (330)
T ss_pred EEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence 9999964 322 2222 2334567889999999986655 568999999976432211 11 12344678999
Q ss_pred ccCCCEEEEEeC-CCcEEEEeCCC--Cc--eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE-cCCCcEEEEEcc--C
Q 010324 358 TNDGSRVVTASS-DCTVKVWDLKS--TD--CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC-NKTSSIYIMTLQ--G 429 (513)
Q Consensus 358 ~~~~~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~~~~i~i~d~~--~ 429 (513)
+|+|+++++++. ++.|.+||+.. +. .+..+........+......+.++|++ .+++++ ..++.|.+|+++ +
T Consensus 183 ~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 183 HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG-RHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCC
Confidence 999999988876 89999999973 22 233332111101112233468899988 555555 457899999985 2
Q ss_pred eEEEEeecCccCCCcEEEEEECCCCCEEEEEec-CceEEEEECC
Q 010324 430 QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGE-DRNLYCFSHQ 472 (513)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~ 472 (513)
.......... .......+.++|+|++|++++. +++|.+|++.
T Consensus 262 ~~~~~~~~~~-~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 262 SVLSFEGHQP-TETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CeEEEeEEEe-ccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2222111111 1223457899999999998885 8999999874
No 191
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=3.3e-18 Score=150.33 Aligned_cols=256 Identities=20% Similarity=0.274 Sum_probs=177.1
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEecccccc--------ccccccccccccccCCccEEEEEEcCCCCEEEE
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKL--------KKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 281 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~--------~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 281 (513)
.+|...|+++.|+|+|..||+|+.+|.+ ++|....-.. ...-.+.....+.+|...|..++|+|++.++++
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~D~g~v-~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGGDGGEV-FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecCCCceE-EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 3899999999999999999999999999 5998762111 011113344567789999999999999999999
Q ss_pred EeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEec---------------
Q 010324 282 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR--------------- 346 (513)
Q Consensus 282 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------- 346 (513)
++.|+.+++||+..|....... .|...+..++|.|-++++++-+.|...+.+++...+.+....
T Consensus 141 ~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLAILD-DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred eeccceEEEEEeccceeEeecc-ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 9999999999999999988886 899999999999999999999988877766654332222111
Q ss_pred ------c--cccceeEEEEccCCCEEEEEeC----CCcE-----EEEeCCCC-ceeEeecCCCCCCCCCceeeEEEecCC
Q 010324 347 ------G--HSSYVNDAIFTNDGSRVVTASS----DCTV-----KVWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPK 408 (513)
Q Consensus 347 ------~--~~~~v~~~~~~~~~~~l~~~~~----dg~i-----~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (513)
. .......++|+|+|..+++... .+.+ ++|+-... ++...++ +...+...+.++|-
T Consensus 220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp------~~~k~~lavr~~pV 293 (434)
T KOG1009|consen 220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP------SPKKPALAVRFSPV 293 (434)
T ss_pred eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC------CCCcceEEEEeeee
Confidence 0 1233556789999999887542 2222 33332211 1111111 22233333333331
Q ss_pred -------C---------CCeEEEEcCCCcEEEEEccC-eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEEC
Q 010324 409 -------N---------PDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 409 -------~---------~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 471 (513)
. ..++++......+++||.+. ..+.... ..|-..++.++|++||.+++..+.||...+..+
T Consensus 294 y~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~--nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 294 YYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVD--NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred EEEeccccccccccccccceEEEEeecceEEEeccccccceEEEe--eeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 0 12344444566899999873 2222222 234567899999999999999999998777766
Q ss_pred CCce
Q 010324 472 QSGK 475 (513)
Q Consensus 472 ~~~~ 475 (513)
...+
T Consensus 372 e~~e 375 (434)
T KOG1009|consen 372 EPWE 375 (434)
T ss_pred cchh
Confidence 6544
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.4e-18 Score=149.34 Aligned_cols=266 Identities=21% Similarity=0.327 Sum_probs=187.6
Q ss_pred ccccCcccceeeeeccccCceeEEEECC--CCCEEEEEecCCeEEEEEeccccccccccccccccccccCC-ccEEEEEE
Q 010324 196 VEDMYPTTLSHTIKFGTKSHAECARFSP--DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD-ETVLCIEF 272 (513)
Q Consensus 196 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~ 272 (513)
..+.........++ +++..++.++|.. ....+.+|+.||+|+ +||+........+.+ .++. .+..|++.
T Consensus 54 lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr-~wD~Rs~~e~a~~~~------~~~~~~~f~~ld~ 125 (376)
T KOG1188|consen 54 LYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVR-LWDIRSQAESARISW------TQQSGTPFICLDL 125 (376)
T ss_pred EEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEE-EEEeecchhhhheec------cCCCCCcceEeec
Confidence 33444455666676 8888888999987 567899999999998 999988765554443 2344 57788888
Q ss_pred cCCCCEEEEEe----CCCcEEEEEcCCcce-eeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCce---ee
Q 010324 273 SRDSEMLASGS----QDGKIKVWRIRSGQC-LRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKL---LK 343 (513)
Q Consensus 273 ~~~~~~l~s~~----~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~ 343 (513)
+-.++.+++|. .+-.|.+||++..+. +..+...|...|+++.|+| +.+.|++||.||.|.++|++.... +.
T Consensus 126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~ 205 (376)
T KOG1188|consen 126 NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL 205 (376)
T ss_pred cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH
Confidence 77788888875 367899999998776 7777778999999999999 667899999999999999965432 22
Q ss_pred EecccccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCC-------CceeeEEEecCCCCCeEEE
Q 010324 344 EFRGHSSYVNDAIFTNDG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGG-------DASVNSVHLFPKNPDHIVV 415 (513)
Q Consensus 344 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~ 415 (513)
..-.+...|.++.|..++ +.+.+-+..++..+|+++.+.+...++.+...... ..-|. ..+|.+...++.
T Consensus 206 ~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~--~~~~~~~~~~~l 283 (376)
T KOG1188|consen 206 HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN--EHSPGDKDTCAL 283 (376)
T ss_pred HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee--cccCCCcceEEE
Confidence 222366779999998876 46888999999999999998866555443211111 11111 123444455555
Q ss_pred EcC-CCcEEEEEcc----CeEEEEeecCcc-CCCcEEEEEECCCCCEEEEEecCceEEEEEC
Q 010324 416 CNK-TSSIYIMTLQ----GQVVKSFSSGKR-EGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 416 ~~~-~~~i~i~d~~----~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 471 (513)
++. .+...++-+. +........... +..-+.++.|...+.++++|++||.+.+|..
T Consensus 284 ~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 284 AGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 544 5555555443 222222222222 3345667888888999999999999999985
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=4.3e-18 Score=143.09 Aligned_cols=245 Identities=16% Similarity=0.246 Sum_probs=182.3
Q ss_pred CccEEEEEEcC---CCCEEEEEeC----CCcEEEEEc--CCcceeeecccccccCeEEEEEccCCC-----EEEEeeCCC
Q 010324 264 DETVLCIEFSR---DSEMLASGSQ----DGKIKVWRI--RSGQCLRRLERAHSEGVTSLVFSRDGS-----QILSTSFDS 329 (513)
Q Consensus 264 ~~~v~~l~~~~---~~~~l~s~~~----dg~i~vwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~dg 329 (513)
.-++.++.|+. ...+||.|+. .+.|.|..+ .+++.+..-...|..+++.+.|.|+.. .|+++ +.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D 121 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SD 121 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cC
Confidence 45678888884 3447888864 456666544 456655555457999999999999763 34444 45
Q ss_pred cEEEEecCCCcee----e-----EecccccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCce
Q 010324 330 TARIHGLKSGKLL----K-----EFRGHSSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDAS 399 (513)
Q Consensus 330 ~i~i~d~~~~~~~----~-----~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
.+++|.+...+.. . +-..+..++++..|+. +.+++.+++-|-+..|||++++.. ......+.+|+..
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~---~~vkTQLIAHDKE 198 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS---GTVKTQLIAHDKE 198 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc---cceeeEEEecCcc
Confidence 7999998632211 1 1123567899999987 677899999999999999998732 0111223479999
Q ss_pred eeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEE-eecCccCCCcEEEEEECCC-CCEEEEEecC-ceEEEEECCC-ce
Q 010324 400 VNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKS-FSSGKREGGDFVAACVSPK-GEWIYCVGED-RNLYCFSHQS-GK 475 (513)
Q Consensus 400 v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~s~~-~~~l~~g~~d-g~i~iwd~~~-~~ 475 (513)
|..++|...+.+.+++.+.||.+++||++...-.+ +........+...++|++. -+++|+-..| ..|.|.|++. ..
T Consensus 199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t 278 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT 278 (364)
T ss_pred eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence 99999999888999999999999999999543333 3333333667889999775 4677766644 5699999986 46
Q ss_pred eeEeeecccCCeEEEEEcCC-CCEEEEEECCCeEEeccC
Q 010324 476 LEHLMKVHEKDVIGVTHHPH-RNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 476 ~~~~~~~h~~~v~~~~~~p~-~~~l~s~~~dg~i~iWdp 513 (513)
++..+++|.+.|++++|.|. ...|+|||+|..+.|||.
T Consensus 279 pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 279 PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred ceehhhcCcccccceEecCCCCceeeecCCcceEEEEec
Confidence 78899999999999999994 579999999999999983
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=7.3e-18 Score=153.10 Aligned_cols=210 Identities=19% Similarity=0.309 Sum_probs=164.5
Q ss_pred CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeccc
Q 010324 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER 304 (513)
Q Consensus 225 g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 304 (513)
...++.++.||.+. +-+ ..++... ....|.+.|.|-.|+|||.-|++++.||.|++|. ++|-...++.
T Consensus 75 ~d~~~i~s~DGkf~-il~-k~~rVE~--------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~- 142 (737)
T KOG1524|consen 75 SDTLLICSNDGRFV-ILN-KSARVER--------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV- 142 (737)
T ss_pred cceEEEEcCCceEE-Eec-ccchhhh--------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh-
Confidence 35788889999995 654 3344433 3345999999999999999999999999999998 6776655554
Q ss_pred ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 010324 305 AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCL 384 (513)
Q Consensus 305 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 384 (513)
....+|.|++|.|+.+.++.+. .+.+.+=.+.....+-.++.|.+-|.++.|++..+.+++|+.|-..++||-. |..+
T Consensus 143 Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~L 220 (737)
T KOG1524|consen 143 QNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANL 220 (737)
T ss_pred hcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Cccc
Confidence 6778999999999988777654 4667777777777788899999999999999999999999999999999964 4443
Q ss_pred EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc
Q 010324 385 QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR 464 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 464 (513)
.+- ..|+.+|++++|.|+ ..+++++.+ +.+ ...+..+.+..++||+||..+++|+..|
T Consensus 221 f~S------~~~ey~ITSva~npd--~~~~v~S~n-t~R-------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 221 FTS------AAEEYAITSVAFNPE--KDYLLWSYN-TAR-------------FSSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred ccC------Chhccceeeeeeccc--cceeeeeee-eee-------------ecCCCccceEEEEEcCCCceeeccccCc
Confidence 332 267889999999998 455554432 111 2223457799999999999999999999
Q ss_pred eEEEEE
Q 010324 465 NLYCFS 470 (513)
Q Consensus 465 ~i~iwd 470 (513)
.+.+=.
T Consensus 279 ~v~~A~ 284 (737)
T KOG1524|consen 279 QLIVAY 284 (737)
T ss_pred eEEEee
Confidence 876644
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=2.1e-17 Score=160.27 Aligned_cols=235 Identities=17% Similarity=0.178 Sum_probs=162.5
Q ss_pred CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCcceeeecccccccCe
Q 010324 234 DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD---GKIKVWRIRSGQCLRRLERAHSEGV 310 (513)
Q Consensus 234 dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v 310 (513)
+..|. +||.+..... .+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++..... ......
T Consensus 183 ~~~i~-i~d~dg~~~~---------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~--~~~g~~ 250 (429)
T PRK01742 183 PYEVR-VADYDGFNQF---------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA--SFRGHN 250 (429)
T ss_pred eEEEE-EECCCCCCce---------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe--cCCCcc
Confidence 46784 9998654421 233477889999999999999988754 36999999887643221 122234
Q ss_pred EEEEEccCCCEEEEee-CCCcEEE--EecCCCceeeEecccccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEe
Q 010324 311 TSLVFSRDGSQILSTS-FDSTARI--HGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWDLKSTDCLQT 386 (513)
Q Consensus 311 ~~~~~~~~~~~l~~~~-~dg~i~i--~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 386 (513)
..++|+|||+.|++++ .+|.+.+ ||+.+++ ...+..+...+.+..|+|||+.++.++ .+|...+|++........
T Consensus 251 ~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 251 GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 4689999999988764 6776555 5665554 445566666788999999999877655 578888887654221111
Q ss_pred ecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceE
Q 010324 387 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNL 466 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 466 (513)
.. .+.. .+..|+|++ ..++..+.+ .+..||+.+.....+.... ......|+|+|++|++++.+|.+
T Consensus 330 ~l------~~~~--~~~~~SpDG-~~ia~~~~~-~i~~~Dl~~g~~~~lt~~~----~~~~~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 330 LV------GGRG--YSAQISADG-KTLVMINGD-NVVKQDLTSGSTEVLSSTF----LDESPSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred Ee------cCCC--CCccCCCCC-CEEEEEcCC-CEEEEECCCCCeEEecCCC----CCCCceECCCCCEEEEEEcCCCc
Confidence 11 1111 346789988 566665554 4666898754433333221 12457899999999999999988
Q ss_pred EEEEC--CCceeeEeeecccCCeEEEEEcCC
Q 010324 467 YCFSH--QSGKLEHLMKVHEKDVIGVTHHPH 495 (513)
Q Consensus 467 ~iwd~--~~~~~~~~~~~h~~~v~~~~~~p~ 495 (513)
.+|++ .+|.....+.+|.+.+...+|+|-
T Consensus 396 ~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 396 KVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred eEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 88875 357788888888888999999984
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=6.3e-18 Score=149.62 Aligned_cols=196 Identities=23% Similarity=0.303 Sum_probs=151.3
Q ss_pred eEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 010324 217 ECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG 296 (513)
Q Consensus 217 ~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~ 296 (513)
.+++|+++|..|++|+.||++| +|++.+...+... ..|...|.++.|+|||+.|++.+.| ..+||++.+|
T Consensus 148 k~vaf~~~gs~latgg~dg~lR-v~~~Ps~~t~l~e--------~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLR-VWEWPSMLTILEE--------IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEE-EEecCcchhhhhh--------HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence 7899999999999999999999 9997665544322 2389999999999999999999999 9999999999
Q ss_pred ceeeecc-cccccCeEEEEEccCC---CEEE--EeeCCCcEEEEecCCCce-----eeEecccccceeEEEEccCCCEEE
Q 010324 297 QCLRRLE-RAHSEGVTSLVFSRDG---SQIL--STSFDSTARIHGLKSGKL-----LKEFRGHSSYVNDAIFTNDGSRVV 365 (513)
Q Consensus 297 ~~~~~~~-~~~~~~v~~~~~~~~~---~~l~--~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~ 365 (513)
..+.+.. ...+.....+.|+.|+ .+.+ ....-+.|..||+..... ..+.......|++++.+++|++++
T Consensus 218 ~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 218 AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA 297 (398)
T ss_pred chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence 8777665 2344567788898876 3333 334445677766542211 111112234699999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc
Q 010324 366 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 428 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~ 428 (513)
.|+.||.|.|++..+.+..+..+ ..|...|+.+.|+|+. ..++..+.+....+..+.
T Consensus 298 lGT~dGsVai~~~~~lq~~~~vk-----~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQRLQYVK-----EAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EeccCCcEEEEEeceeeeeEeeh-----hhheeeeeeEEEcCCc-CcccccccCCceeEEEEe
Confidence 99999999999999887776655 3688899999999987 677777777777776665
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.78 E-value=3.6e-17 Score=139.56 Aligned_cols=242 Identities=16% Similarity=0.196 Sum_probs=174.9
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 292 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd 292 (513)
..+|+|.+|++|+..+|++.....+. ||....... ....+++..|...|+++.|+|.++.|++|+.|..-+||.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evh-iy~~~~~~~-----w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVH-IYSMLGADL-----WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEE-EEEecCCCC-----ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 46899999999999999999999997 998876653 234456777999999999999999999999999999999
Q ss_pred cCCc-c--eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee----eEecccccceeEEEEccCCCEEE
Q 010324 293 IRSG-Q--CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL----KEFRGHSSYVNDAIFTNDGSRVV 365 (513)
Q Consensus 293 ~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~ 365 (513)
...+ + +.-.+. .++..++++.|+|.++.|++|+.-..|.||-.+..+-- ..-+.+.+.|+++.|+|++-+++
T Consensus 84 ~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred cCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 8433 2 233333 57889999999999999999999999999987544321 11234567899999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcE
Q 010324 366 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDF 445 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 445 (513)
+|+.|+..++|..-- +....... -.|-+.++ -. |..+..+. ..++.+
T Consensus 163 aGs~D~k~rVfSayI----K~Vdekpa------------p~pWgsk~-PF-------------G~lm~E~~---~~ggwv 209 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYI----KGVDEKPA------------PTPWGSKM-PF-------------GQLMSEAS---SSGGWV 209 (361)
T ss_pred ccccCcceeEEEEee----eccccCCC------------CCCCccCC-cH-------------HHHHHhhc---cCCCce
Confidence 999999999997431 11111100 00111000 00 01111111 246778
Q ss_pred EEEEECCCCCEEEEEecCceEEEEECCCce-eeEeeecccCCeEEEEEcC
Q 010324 446 VAACVSPKGEWIYCVGEDRNLYCFSHQSGK-LEHLMKVHEKDVIGVTHHP 494 (513)
Q Consensus 446 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p 494 (513)
..+.|+|+|..|+-.+.|+.+.+-|..... .+..+....-+..++.|-.
T Consensus 210 h~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is 259 (361)
T KOG1523|consen 210 HGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS 259 (361)
T ss_pred eeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec
Confidence 899999999999999999999999987664 3333333335666666654
No 198
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.4e-16 Score=135.82 Aligned_cols=281 Identities=16% Similarity=0.249 Sum_probs=191.6
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKVWR 292 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~vwd 292 (513)
..+..++|++.-..+|++..|..|+ +|+-.. .....++. .....|+|++|-| .+..|+.|+.. -|.+|.
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVr-iy~kss-t~pt~Lks-------~sQrnvtclawRPlsaselavgCr~-gIciW~ 168 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVR-IYDKSS-TCPTKLKS-------VSQRNVTCLAWRPLSASELAVGCRA-GICIWS 168 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEE-EeccCC-CCCceecc-------hhhcceeEEEeccCCcceeeeeecc-eeEEEE
Confidence 3466789999888899999999998 998665 22222221 1356899999999 45567777755 599998
Q ss_pred cCCc----c--------eeeecccccccCeEEEEEccCCCEEEEeeC-CCcEEEEecCCCceeeEecccccceeEEEEcc
Q 010324 293 IRSG----Q--------CLRRLERAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 359 (513)
Q Consensus 293 ~~~~----~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 359 (513)
.... . ....+......+|+++.|++||..+++++. |..|.|||..++..+.-.....+.++-+.|+|
T Consensus 169 ~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP 248 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP 248 (445)
T ss_pred cCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence 6421 1 111222223478999999999999999886 56899999999877655544566788999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-ceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEe---
Q 010324 360 DGSRVVTASSDCTVKVWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSF--- 435 (513)
Q Consensus 360 ~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--- 435 (513)
||.+|++++-|+..++|+.... ...+.. ...+.|...+|+|.+..++++++....++-....++.....
T Consensus 249 dgd~lfaAt~davfrlw~e~q~wt~erw~-------lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~ 321 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQSWTKERWI-------LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQ 321 (445)
T ss_pred CCCEEEEecccceeeeehhcccceeccee-------ccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcc
Confidence 9999999999999999964432 222211 23458999999999988899998888777666543211100
Q ss_pred --------e---------cCccCCCcEEEEEECCCCCEEEEEecCc--------eEEEEECCCceeeEeee-c--ccCCe
Q 010324 436 --------S---------SGKREGGDFVAACVSPKGEWIYCVGEDR--------NLYCFSHQSGKLEHLMK-V--HEKDV 487 (513)
Q Consensus 436 --------~---------~~~~~~~~~~~~~~s~~~~~l~~g~~dg--------~i~iwd~~~~~~~~~~~-~--h~~~v 487 (513)
. ....-.+.+.+++|.|.|.++++.-..+ .|.+||.+....+.... + .....
T Consensus 322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P 401 (445)
T KOG2139|consen 322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYP 401 (445)
T ss_pred cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCC
Confidence 0 0011246778999999999999876433 46778876554443321 1 11224
Q ss_pred EEEEEcC---CCCEEEEEECCCeEEec
Q 010324 488 IGVTHHP---HRNLLATYGEDCTMKLW 511 (513)
Q Consensus 488 ~~~~~~p---~~~~l~s~~~dg~i~iW 511 (513)
..+.|+| ++.+|..+=..|.+.-|
T Consensus 402 ~~IsF~pl~n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 402 AYISFGPLKNEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred ceEEeeecccCCcEEEEEeccCceEee
Confidence 5566666 45666666666766544
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=7.8e-18 Score=153.37 Aligned_cols=223 Identities=20% Similarity=0.306 Sum_probs=171.4
Q ss_pred cccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEcc--CCCEEEEeeCCCcEEE
Q 010324 256 ADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARI 333 (513)
Q Consensus 256 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i 333 (513)
....+.||.+.|+|++|+.+|.+|++|+.|-.+.|||....+.+..+..+|...|.++.|-| +.+.+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999 5678899999999999
Q ss_pred EecCCC----------ceeeEecccccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeEe-ecCCC---CCCCCCc
Q 010324 334 HGLKSG----------KLLKEFRGHSSYVNDAIFTNDG-SRVVTASSDCTVKVWDLKSTDCLQT-FKPPP---PLRGGDA 398 (513)
Q Consensus 334 ~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~---~~~~~~~ 398 (513)
+|+... .....+..|...|..++..|++ +.+.+++.||+|+-+|++....-.. ...+. .....-.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 999742 3345566788999999999988 7899999999999999986321110 00000 0011123
Q ss_pred eeeEEEecCCCCCeEEEEcCCCcEEEEEccC-------e------------EEEEeecCcc-C-----C---CcEEEEEE
Q 010324 399 SVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-------Q------------VVKSFSSGKR-E-----G---GDFVAACV 450 (513)
Q Consensus 399 ~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-------~------------~~~~~~~~~~-~-----~---~~~~~~~~ 450 (513)
...++..+|..+.++++|+.+...++||.+. . .+..+...+. . . ..++-+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 5678999999999999999999999999431 0 1122222111 0 0 11456788
Q ss_pred CCCCCEEEEEecCceEEEEECCCceeeE
Q 010324 451 SPKGEWIYCVGEDRNLYCFSHQSGKLEH 478 (513)
Q Consensus 451 s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 478 (513)
+|+|.-|.+.-....|+++|+..++...
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 9999988888778899999998776543
No 200
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=8.6e-16 Score=148.17 Aligned_cols=289 Identities=18% Similarity=0.237 Sum_probs=205.7
Q ss_pred eeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010324 216 AECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS 295 (513)
Q Consensus 216 v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~ 295 (513)
-.++.+++.|.+.+..-.++ + ++|+...+. ..... ...-..|.-.++|.++||+++++|+|..||.|.+|.--.
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~-~-~~~~v~~~~-~~~~~---~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCK-I-HIYFVPKHT-KHTSS---RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFG 236 (792)
T ss_pred CccEEEcCCceEEEEEEeee-E-EEEEecccc-eeecc---chhhhhhcccceeEEeccccceEEEeccCCcEEEEeccc
Confidence 46788999998888777555 5 388877654 11111 111223777799999999999999999999999996322
Q ss_pred ---cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCc
Q 010324 296 ---GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCT 372 (513)
Q Consensus 296 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 372 (513)
.....+..+-|...|.+++|+++|.+|++|+..|.+.+|.+.+++ .+-+..-.++|..+.++||+.+.+....|..
T Consensus 237 ~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNq 315 (792)
T KOG1963|consen 237 SSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQ 315 (792)
T ss_pred cccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCce
Confidence 122223334688899999999999999999999999999999988 5556667889999999999999999999999
Q ss_pred EEEEeCCCCceeEeecCCCCC-----CCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecC-------c
Q 010324 373 VKVWDLKSTDCLQTFKPPPPL-----RGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSG-------K 439 (513)
Q Consensus 373 i~iwd~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~-------~ 439 (513)
|.+-...+.....++....+. ....+-.+.+++.|.. +.++..+..|.|.+||+. ...+..+... .
T Consensus 316 I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~ 394 (792)
T KOG1963|consen 316 IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD 394 (792)
T ss_pred EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeeeEEEEeecccCCc
Confidence 999987665554444333222 1224456677888844 788899999999999997 3333222211 1
Q ss_pred -cCCCcEEEEEECCCCCEEEEEec--------Cc--eEEEEECCCceeeE-----eeecccCCeEEEEEcC-CCC-EEEE
Q 010324 440 -REGGDFVAACVSPKGEWIYCVGE--------DR--NLYCFSHQSGKLEH-----LMKVHEKDVIGVTHHP-HRN-LLAT 501 (513)
Q Consensus 440 -~~~~~~~~~~~s~~~~~l~~g~~--------dg--~i~iwd~~~~~~~~-----~~~~h~~~v~~~~~~p-~~~-~l~s 501 (513)
...-.+++++.+..|.+++++-. || .+++|.......-. ....|...+...++.+ ... ..++
T Consensus 395 ~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vt 474 (792)
T KOG1963|consen 395 VNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVT 474 (792)
T ss_pred ceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEE
Confidence 12234567777888999998752 33 57889765443222 2235776655555544 333 8999
Q ss_pred EECCCeEEecc
Q 010324 502 YGEDCTMKLWK 512 (513)
Q Consensus 502 ~~~dg~i~iWd 512 (513)
+|.||.++||-
T Consensus 475 a~~dg~~KiW~ 485 (792)
T KOG1963|consen 475 ASVDGDFKIWV 485 (792)
T ss_pred eccCCeEEEEE
Confidence 99999999993
No 201
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=1.9e-17 Score=153.37 Aligned_cols=242 Identities=18% Similarity=0.261 Sum_probs=167.1
Q ss_pred ECCCCCEEEE--EecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCcc
Q 010324 221 FSPDGQFLVS--CSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKVWRIRSGQ 297 (513)
Q Consensus 221 ~s~~g~~la~--g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~vwd~~~~~ 297 (513)
|..+...+|+ ++..|.|- ||++........-... .+ .....|+++.|.| |...||+++.||.|++|.+..+.
T Consensus 587 fcan~~rvAVPL~g~gG~ia-i~el~~PGrLPDgv~p---~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIA-IYELNEPGRLPDGVMP---GL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred eeeccceEEEEecCCCceEE-EEEcCCCCCCCccccc---cc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCC
Confidence 4445556665 45678896 9998753322111110 11 1467899999999 88899999999999999987543
Q ss_pred -------eeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC
Q 010324 298 -------CLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS 369 (513)
Q Consensus 298 -------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 369 (513)
+...+ ..|...|+++.|+| ..+.|+++++|.+|++||+.+++....+.+|.+.|.+++|+|+|+.+++.+.
T Consensus 662 l~e~~~tPe~~l-t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK 740 (1012)
T KOG1445|consen 662 LPENEMTPEKIL-TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK 740 (1012)
T ss_pred CCcccCCcceee-ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec
Confidence 22333 37899999999999 5668999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC----CcEEEEEccC---eEEEEeecCccCC
Q 010324 370 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT----SSIYIMTLQG---QVVKSFSSGKREG 442 (513)
Q Consensus 370 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~----~~i~i~d~~~---~~~~~~~~~~~~~ 442 (513)
||+|++|..++++... .+..... ...--.+.|.-++ .++++.+.| ..|.+||... ..+....... .
T Consensus 741 Dg~~rVy~Prs~e~pv-~Eg~gpv---gtRgARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--a 813 (1012)
T KOG1445|consen 741 DGTLRVYEPRSREQPV-YEGKGPV---GTRGARILWACDG-RIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--A 813 (1012)
T ss_pred CceEEEeCCCCCCCcc-ccCCCCc---cCcceeEEEEecC-cEEEEecccccchhhhhhhhhhhccCCcceeeeecc--c
Confidence 9999999998765321 1111111 1233456676666 444444433 5688888762 2222221111 1
Q ss_pred CcEEEEEECCCCCE-EEEEecCceEEEEECCCce
Q 010324 443 GDFVAACVSPKGEW-IYCVGEDRNLYCFSHQSGK 475 (513)
Q Consensus 443 ~~~~~~~~s~~~~~-l~~g~~dg~i~iwd~~~~~ 475 (513)
..+.--.+.+|... +++|-.|..|++|.+-...
T Consensus 814 ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 814 PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred CccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 11222334556554 5666689999999986543
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=7.8e-15 Score=127.94 Aligned_cols=236 Identities=14% Similarity=0.203 Sum_probs=183.8
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC--CcEEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD--GKIKV 290 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--g~i~v 290 (513)
...+..+.|+.+...|..|+.||.- +++...-...... ......|--+-|+. .++|..+.+ ..+++
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk--~~~~~~~~k~~~~--------~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv 72 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYK--IFSCSPFEKCFSK--------DTEGVSIVEMLFSS--SLVAIVSIKQPRKLKV 72 (391)
T ss_pred CcceeeeeeccceeEEEccCCCcee--EEecCchHHhhcc--------cCCCeEEEEeeccc--ceeEEEecCCCceEEE
Confidence 4456777899999999999999975 7877653321100 11334566677764 466666554 35999
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecc---cccceeEEEEccCCCEEEEE
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG---HSSYVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~ 367 (513)
.++..+..+..+. ...+|.++.++. +.|+++-.+. |+|||+++.+.+.++.. +...+.++.+++.+.+++.-
T Consensus 73 ~~~Kk~~~ICe~~--fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp 147 (391)
T KOG2110|consen 73 VHFKKKTTICEIF--FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYP 147 (391)
T ss_pred EEcccCceEEEEe--cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEec
Confidence 9999888888875 677899999974 4666665444 99999999999888764 34456666666677788864
Q ss_pred e--CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc-EEEEEcc-CeEEEEeecCccCCC
Q 010324 368 S--SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS-IYIMTLQ-GQVVKSFSSGKREGG 443 (513)
Q Consensus 368 ~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~-i~i~d~~-~~~~~~~~~~~~~~~ 443 (513)
+ ..|.|.+||..+-+.+..+. +|++++-+++|++++ .++++++..|+ |+++.+. |+.+..+..+.. ..
T Consensus 148 ~s~t~GdV~l~d~~nl~~v~~I~------aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~~ 219 (391)
T KOG2110|consen 148 GSTTSGDVVLFDTINLQPVNTIN------AHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-PV 219 (391)
T ss_pred CCCCCceEEEEEcccceeeeEEE------ecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEeeeeeCCce-ee
Confidence 3 46889999999988888876 789999999999998 99999999986 7899987 788888887765 66
Q ss_pred cEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 444 DFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 444 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
.+.+++|+|++.+|++.++.++|.+|.+..
T Consensus 220 ~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 220 SIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 788999999999999999999999998753
No 203
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=9.6e-16 Score=125.88 Aligned_cols=239 Identities=18% Similarity=0.252 Sum_probs=168.5
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEecccccc----ccccccc-cccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKL----KKDLQYQ-ADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~----~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
-+|.++|+.++|. ..+|.+|+ ||.|+ =|....... ....... +.++-...-..|++|...|..+-+++++.
T Consensus 59 qahdgpiy~~~f~--d~~Lls~g-dG~V~-gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG 134 (325)
T KOG0649|consen 59 QAHDGPIYYLAFH--DDFLLSGG-DGLVY-GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG 134 (325)
T ss_pred cccCCCeeeeeee--hhheeecc-CceEE-EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC
Confidence 4899999999998 44677776 59996 887754322 1111111 11100112246899999997777777778
Q ss_pred CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccc----------ccceeE
Q 010324 285 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH----------SSYVND 354 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~v~~ 354 (513)
|+.++-||+++|+..+.+. +|+..|.++.--.....+++|+.||++++||.++++.+..+... ...|-+
T Consensus 135 D~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga 213 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA 213 (325)
T ss_pred CeEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE
Confidence 9999999999999988887 99999999998556668999999999999999999988876432 123445
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEE
Q 010324 355 AIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKS 434 (513)
Q Consensus 355 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 434 (513)
++.+ ..++++|+. ..+.+|.+++.++...++.+ ..+..+.|.. +.+++++..+.+.-|.+.|.....
T Consensus 214 la~~--edWlvCGgG-p~lslwhLrsse~t~vfpip-------a~v~~v~F~~---d~vl~~G~g~~v~~~~l~Gvl~a~ 280 (325)
T KOG0649|consen 214 LAVN--EDWLVCGGG-PKLSLWHLRSSESTCVFPIP-------ARVHLVDFVD---DCVLIGGEGNHVQSYTLNGVLQAN 280 (325)
T ss_pred Eecc--CceEEecCC-CceeEEeccCCCceEEEecc-------cceeEeeeec---ceEEEeccccceeeeeeccEEEEe
Confidence 5544 558887765 56999999999998888754 3566666654 678888888899999998776555
Q ss_pred eecCccCCCcEEEEEECCC-CCEEEEEecCceEEEE
Q 010324 435 FSSGKREGGDFVAACVSPK-GEWIYCVGEDRNLYCF 469 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw 469 (513)
..... ....+..++.. -+++-+++..+.+.++
T Consensus 281 ip~~s---~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 281 IPVES---TACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccCCc---cceeeecccCCceEEEEecccceeeeee
Confidence 54432 12333444222 3455556666666655
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.1e-16 Score=156.50 Aligned_cols=278 Identities=17% Similarity=0.234 Sum_probs=195.5
Q ss_pred cccccccCcccceeeeecc--ccCceeEEEECC--CCCEEEEEecCCeEEEEEecc-cc----ccccccccccccccccC
Q 010324 193 KQDVEDMYPTTLSHTIKFG--TKSHAECARFSP--DGQFLVSCSFDGFIEVVWDYL-SG----KLKKDLQYQADETFMMH 263 (513)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~--~g~~la~g~~dg~i~~iwd~~-~~----~~~~~~~~~~~~~~~~h 263 (513)
...+|+....+....+..+ ....|+.+.+-. |..++.+|+.||.|| ||+-- ++ +++.... .......+.
T Consensus 1087 ~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIR-Iwk~y~~~~~~~eLVTaw~-~Ls~~~~~~ 1164 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIR-IWKDYADKWKKPELVTAWS-SLSDQLPGA 1164 (1387)
T ss_pred eEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEE-EecccccccCCceeEEeec-cccccCccC
Confidence 3445666655555555433 234688888765 567899999999999 99743 22 1111111 011111222
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCc--
Q 010324 264 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGK-- 340 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-- 340 (513)
.+.=.-+.|.....+|+++|.-..|+|||.........+..+....|+++.-+. .|+.+++|..||.|++||.+...
T Consensus 1165 r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred CCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc
Confidence 222255678886667777776889999999998888888766777788876654 57999999999999999988653
Q ss_pred -eeeEecccccc--eeEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE
Q 010324 341 -LLKEFRGHSSY--VNDAIFTNDGSR-VVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 341 -~~~~~~~~~~~--v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 416 (513)
.+...+.|... |..+.+.+.|-. |++|+.||.|++||++.... .++........-.+..+++..++.. ..+++|
T Consensus 1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~~~yGs~lTal~VH~ha-piiAsG 1322 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVAHWEYGSALTALTVHEHA-PIIASG 1322 (1387)
T ss_pred ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeeeccccCccceeeeeccCC-Ceeeec
Confidence 46677788776 999999886654 99999999999999997522 2211111101112358888888876 778888
Q ss_pred cCCCcEEEEEccCeEEEEeecCc----cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce
Q 010324 417 NKTSSIYIMTLQGQVVKSFSSGK----REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK 475 (513)
Q Consensus 417 ~~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 475 (513)
+. +.|.||++.|+.+..+.... ...+.+.+++|+|..-.+++|+.|..|.||....+.
T Consensus 1323 s~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1323 SA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred Cc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 87 99999999987766555332 123567899999999999999999999999876543
No 205
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=5.7e-16 Score=132.72 Aligned_cols=274 Identities=19% Similarity=0.274 Sum_probs=189.4
Q ss_pred EEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCc
Q 010324 218 CARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG-SQDGKIKVWRIRSG 296 (513)
Q Consensus 218 ~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~i~vwd~~~~ 296 (513)
-++|||+|+++|+++.- .+ +|-|..+-++...+. .-+.|..+.|..|.-+++.+ ..++.|.+|++...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rl-viRd~~tlq~~qlf~---------cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RL-VIRDSETLQLHQLFL---------CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP 81 (447)
T ss_pred ceeECCCCCeeeeeeee-EE-EEeccchhhHHHHHH---------HHHHhhheeeeccceeeeeeeeccceEEEEEeecc
Confidence 46899999999999877 45 377776655443322 24568889999887766554 66889999999988
Q ss_pred ceeeecccccccCeEEEEEccCCCEE-EEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCC-----
Q 010324 297 QCLRRLERAHSEGVTSLVFSRDGSQI-LSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD----- 370 (513)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 370 (513)
+--.++. ....++.+++|+|||+.+ .+...+-.|.+|.+.+.+... ++-.+..+..++|+|||++.+..+.-
T Consensus 82 ew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 82 EWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDY 159 (447)
T ss_pred eeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHH
Confidence 8888887 667889999999999655 566778999999997765433 23234456778888888877765531
Q ss_pred -------------------------------CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC
Q 010324 371 -------------------------------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT 419 (513)
Q Consensus 371 -------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 419 (513)
..+.+||---.-.+..+ .....+..+.|+|.+ .++++|+.|
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-------e~~lG~k~v~wsP~~-qflavGsyD 231 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-------ERGLGLKFVEWSPCN-QFLAVGSYD 231 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-------eeccceeEEEecccc-ceEEeeccc
Confidence 12333332111111111 123467888999987 999999999
Q ss_pred CcEEEEEcc-----CeEEE--------------------------------------------------------Eee--
Q 010324 420 SSIYIMTLQ-----GQVVK--------------------------------------------------------SFS-- 436 (513)
Q Consensus 420 ~~i~i~d~~-----~~~~~--------------------------------------------------------~~~-- 436 (513)
+.+++.+-- ++-.. ...
T Consensus 232 ~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~ 311 (447)
T KOG4497|consen 232 QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPP 311 (447)
T ss_pred hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCC
Confidence 988774321 11000 000
Q ss_pred -cCccCCCcEEEEEECCCCCEEEEEec--CceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 437 -SGKREGGDFVAACVSPKGEWIYCVGE--DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 437 -~~~~~~~~~~~~~~s~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
........+.-++|++|..++++-.+ -+.+.+||++..++...+. ...+|.+..|+|....|+.+....++++|-|
T Consensus 312 tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 312 TDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred CCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence 00011223456899999999988874 3679999998877655553 4678999999999888888877788999976
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.74 E-value=3.1e-15 Score=140.26 Aligned_cols=304 Identities=15% Similarity=0.184 Sum_probs=189.4
Q ss_pred ccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEE
Q 010324 192 MKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIE 271 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 271 (513)
....+.|....+...++..+.. .-..+.|+|||+++++++.||.+. ++|+.+++.+..+. -.....+++
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vs-viD~~~~~~v~~i~---------~G~~~~~i~ 84 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVS-VIDLATGKVVATIK---------VGGNPRGIA 84 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEE-EEETTSSSEEEEEE----------SSEEEEEE
T ss_pred CEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEE-EEECCcccEEEEEe---------cCCCcceEE
Confidence 3444566666777788875432 234478999999999999999996 99999999887665 345678899
Q ss_pred EcCCCCEEEEEe-CCCcEEEEEcCCcceeeecccc------cccCeEEEEEccCCCEEEEeeC-CCcEEEEecCCCceee
Q 010324 272 FSRDSEMLASGS-QDGKIKVWRIRSGQCLRRLERA------HSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKSGKLLK 343 (513)
Q Consensus 272 ~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~ 343 (513)
+++||+++++++ .++.+.++|.++.+.++.+... ....+..+..+|....+++.-. .+.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999998876 5889999999999988877522 2346788888888886666555 4888888877654332
Q ss_pred -EecccccceeEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC---------CCe
Q 010324 344 -EFRGHSSYVNDAIFTNDGSRVVTA-SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN---------PDH 412 (513)
Q Consensus 344 -~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~ 412 (513)
.............|+|++++++++ ..+..|.++|..+++....+..... .+..+...+ .+|.. ...
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~--p~~~~~~~~-php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKK--PHPGPGANF-PHPGFGPVWATSGLGYF 241 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS--BEETTEEEE-EETTTEEEEEEEBSSSS
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccc--ccccccccc-cCCCcceEEeeccccce
Confidence 222234457788999999987665 4567899999999887766543221 122222222 12221 122
Q ss_pred EEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEE----ecCceEEEEECCCceeeEeeeccc-CC
Q 010324 413 IVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCV----GEDRNLYCFSHQSGKLEHLMKVHE-KD 486 (513)
Q Consensus 413 l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g----~~dg~i~iwd~~~~~~~~~~~~h~-~~ 486 (513)
.++.-....+.+|+.. .+.++.+... ++. .-+..+|+++++++. ...+.|.++|..+.+.+..+.... ..
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~---G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~ 317 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQ---GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKR 317 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-S---SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--
T ss_pred ecccccCCccccchhhcCeEEEEEECC---CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCc
Confidence 2222233344456655 4566666552 233 667789999999998 456899999999998877775333 36
Q ss_pred eEEEEEcCCCCEEEEEE--CCCeEEeccC
Q 010324 487 VIGVTHHPHRNLLATYG--EDCTMKLWKP 513 (513)
Q Consensus 487 v~~~~~~p~~~~l~s~~--~dg~i~iWdp 513 (513)
+..+.|+++|..+..+. .+|.|.|||+
T Consensus 318 ~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 318 VVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred EeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 89999999998665554 3337999984
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.3e-15 Score=145.62 Aligned_cols=234 Identities=14% Similarity=0.117 Sum_probs=159.3
Q ss_pred eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCcceeeecccccccCeEE
Q 010324 236 FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ---DGKIKVWRIRSGQCLRRLERAHSEGVTS 312 (513)
Q Consensus 236 ~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 312 (513)
.+. +||.+..... .+..+...+.+.+|+|||+.|+..+. +..+.+|++.+|+..... .....+..
T Consensus 180 ~l~-~~d~dg~~~~---------~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--~~~~~~~~ 247 (429)
T PRK03629 180 ELR-VSDYDGYNQF---------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGA 247 (429)
T ss_pred eEE-EEcCCCCCCE---------EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--CCCCCcCC
Confidence 573 7887654432 12226678999999999999987643 357999999888643322 23334557
Q ss_pred EEEccCCCEEEEe-eCCC--cEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCC-Cc--EEEEeCCCCceeEe
Q 010324 313 LVFSRDGSQILST-SFDS--TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD-CT--VKVWDLKSTDCLQT 386 (513)
Q Consensus 313 ~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~ 386 (513)
.+|+|||+.|+.. +.+| .|++||+.+++... +..+...+....|+|||+.|+.++.+ +. |.++|+.++... .
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~ 325 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-R 325 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-E
Confidence 8999999988865 4444 58999998876543 44444567889999999988877754 44 455577665433 2
Q ss_pred ecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC--CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc
Q 010324 387 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT--SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR 464 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 464 (513)
+.. .........|+|++..+++++..+ ..|++||+.+.....+.... ......|+|||+.|+.++.++
T Consensus 326 lt~------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~----~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 326 ITW------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF----LDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred eec------CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC----CCCCceECCCCCEEEEEEcCC
Confidence 221 122345678999985544544444 35888898865555554321 123578999999999998776
Q ss_pred e---EEEEECCCceeeEeeecccCCeEEEEEcC
Q 010324 465 N---LYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494 (513)
Q Consensus 465 ~---i~iwd~~~~~~~~~~~~h~~~v~~~~~~p 494 (513)
. ++++++ +|.....+.+|.+.+...+|+|
T Consensus 396 ~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 396 MGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 4 777787 4666677778888999999997
No 208
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=4.5e-15 Score=129.42 Aligned_cols=235 Identities=17% Similarity=0.281 Sum_probs=172.8
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCC--cEEEEecCCCc
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS--TARIHGLKSGK 340 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~ 340 (513)
....+..+.|+.+...|..|+.|| .++|............ .....|.-+-|+ ..+++..+.+. .+++++.+.+.
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~-~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKD-TEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhccc-CCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCc
Confidence 345677888999999999999887 5778766544322221 234456666676 44666655543 59999998888
Q ss_pred eeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE--cC
Q 010324 341 LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC--NK 418 (513)
Q Consensus 341 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~ 418 (513)
.+..+. ....|.++.++. ++|+++-.+. |+|||+++.+.+.++.... .+...+.++..++.+ .+++.- ..
T Consensus 80 ~ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~---~n~~gl~AlS~n~~n-~ylAyp~s~t 151 (391)
T KOG2110|consen 80 TICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTP---PNPKGLCALSPNNAN-CYLAYPGSTT 151 (391)
T ss_pred eEEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccC---CCccceEeeccCCCC-ceEEecCCCC
Confidence 887776 455688888875 4666666554 9999999999888876432 233344555555444 344432 34
Q ss_pred CCcEEEEEccC-eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCce-EEEEECCCceeeEeeecccC--CeEEEEEcC
Q 010324 419 TSSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRN-LYCFSHQSGKLEHLMKVHEK--DVIGVTHHP 494 (513)
Q Consensus 419 ~~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~h~~--~v~~~~~~p 494 (513)
.|.|.+||... +.+..+. .|.+.+-+++|+++|.+||++++.|+ |+||.+.+|+.+..++.... .|.+++|+|
T Consensus 152 ~GdV~l~d~~nl~~v~~I~---aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTIN---AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred CceEEEEEcccceeeeEEE---ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 68999999974 3444444 46788999999999999999999997 89999999999998875443 578999999
Q ss_pred CCCEEEEEECCCeEEecc
Q 010324 495 HRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 495 ~~~~l~s~~~dg~i~iWd 512 (513)
++++|++.|..++|+|++
T Consensus 229 ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFK 246 (391)
T ss_pred CCCeEEEecCCCeEEEEE
Confidence 999999999999999986
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.8e-15 Score=129.34 Aligned_cols=261 Identities=15% Similarity=0.170 Sum_probs=166.3
Q ss_pred eeeeeccccCceeEEEECC-CCCEEEEEecCCeEEEEEecccccccccc----ccc--cccccccCCccEEEEEEcCCCC
Q 010324 205 SHTIKFGTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDL----QYQ--ADETFMMHDETVLCIEFSRDSE 277 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~----~~~--~~~~~~~h~~~v~~l~~~~~~~ 277 (513)
...++......|+|++|-| .+.-|++|+..|.. +|........... ... ......|| .+|++|.|.+||.
T Consensus 132 pt~Lks~sQrnvtclawRPlsaselavgCr~gIc--iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt 208 (445)
T KOG2139|consen 132 PTKLKSVSQRNVTCLAWRPLSASELAVGCRAGIC--IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT 208 (445)
T ss_pred CceecchhhcceeEEEeccCCcceeeeeecceeE--EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC
Confidence 3344445567899999999 45688888887743 9987532211110 111 11123445 7899999999999
Q ss_pred EEEEEeC-CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEE
Q 010324 278 MLASGSQ-DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAI 356 (513)
Q Consensus 278 ~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 356 (513)
.+++++. |..|.|||..++..+.-.. ...+.++-+.|+|||.+|++++.|+..++|...............+.|...+
T Consensus 209 ~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtac 287 (445)
T KOG2139|consen 209 ILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTAC 287 (445)
T ss_pred EEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeee
Confidence 9999986 6789999999998766553 4567789999999999999999999999996543332333333455899999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceeEe---------------ecCCC---CCCCCCceeeEEEecCCCCCeEEEEcC
Q 010324 357 FTNDGSRVVTASSDCTVKVWDLKSTDCLQT---------------FKPPP---PLRGGDASVNSVHLFPKNPDHIVVCNK 418 (513)
Q Consensus 357 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~ 418 (513)
|+|+|.+|+.++. |.-++|.+.....-.. +.... ...-..+.+.+++|.|.+ .++++..+
T Consensus 288 WspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fK 365 (445)
T KOG2139|consen 288 WSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFK 365 (445)
T ss_pred ecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEc
Confidence 9999998776554 3344554431110000 00000 001124678899999998 67776654
Q ss_pred CC--------cEEEEEccCeEEEEee-cCccCCCcEEEEEECC---CCCEEEEEecCceEEEEEC
Q 010324 419 TS--------SIYIMTLQGQVVKSFS-SGKREGGDFVAACVSP---KGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 419 ~~--------~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~s~---~~~~l~~g~~dg~i~iwd~ 471 (513)
.+ .|..||.+......+. -+...+.....++|+| +|.+|..+=+.|.+.-|++
T Consensus 366 g~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 43 3667777644333332 1222222244555654 5667777767777776664
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=3.4e-15 Score=148.62 Aligned_cols=248 Identities=17% Similarity=0.263 Sum_probs=175.4
Q ss_pred cccccCCccEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCc-------ceeeecccccccCeEEEEEccCCCEEEEeeCCC
Q 010324 258 ETFMMHDETVLCIEFSRDS-EMLASGSQDGKIKVWRIRSG-------QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS 329 (513)
Q Consensus 258 ~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 329 (513)
..+..|...|..++.++.. .++++||.||+|++||...- +...++. ...+.+.++...+.++.+|+++.||
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCCeEEEEcCCC
Confidence 3556688889899888754 99999999999999998631 1222332 3567899999999999999999999
Q ss_pred cEEEEecCCCc-------eeeEeccc-ccce-eEEEEcc-CCC-EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCc
Q 010324 330 TARIHGLKSGK-------LLKEFRGH-SSYV-NDAIFTN-DGS-RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA 398 (513)
Q Consensus 330 ~i~i~d~~~~~-------~~~~~~~~-~~~v-~~~~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 398 (513)
.|.+.++.-.+ .......+ .+.+ ..-+|.. .+. .++.+...+.|..||+++.....+.+.. -..+
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~----~~hG 1196 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ----LRHG 1196 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC----cccc
Confidence 99999886521 11111112 2223 3334433 233 7888889999999999988766665543 2467
Q ss_pred eeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECC---CCCEEEEEe--cCceEEEEECC
Q 010324 399 SVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSP---KGEWIYCVG--EDRNLYCFSHQ 472 (513)
Q Consensus 399 ~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~g~--~dg~i~iwd~~ 472 (513)
.|++++.+|.+ ..++.|+..|.+.+||++ +-.+..+.... ..++..++.+| .....++++ ..+.|.+|++.
T Consensus 1197 ~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1197 LVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred ceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 89999999988 799999999999999999 55555555443 35566655544 334555544 57789999999
Q ss_pred CceeeEeeeccc-------------------CCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 473 SGKLEHLMKVHE-------------------KDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 473 ~~~~~~~~~~h~-------------------~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+|.....+...+ -......+...+.++.+|+.|+.|+.||+
T Consensus 1274 ~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1274 TGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred cCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 987666554321 11223334445578899999999999996
No 211
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.9e-16 Score=143.93 Aligned_cols=182 Identities=19% Similarity=0.345 Sum_probs=147.0
Q ss_pred ceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccc-c-ccccccccccCCccEEEEEEcCCCCEEEE
Q 010324 204 LSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKD-L-QYQADETFMMHDETVLCIEFSRDSEMLAS 281 (513)
Q Consensus 204 ~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~-~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 281 (513)
+..+++ +|.++|.|++.++++..+.+|+.||+|+ .|++....-... . .......+.||.+.|+.+++|+....|++
T Consensus 336 pi~tfr-aH~gPVl~v~v~~n~~~~ysgg~Dg~I~-~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls 413 (577)
T KOG0642|consen 336 PILTFR-AHEGPVLCVVVPSNGEHCYSGGIDGTIR-CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS 413 (577)
T ss_pred eeEEEe-cccCceEEEEecCCceEEEeeccCceee-eeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence 445565 9999999999999999999999999998 997652211100 0 01223467899999999999999999999
Q ss_pred EeCCCcEEEEEcCCcceeeecc---------------------------------------------------cccccCe
Q 010324 282 GSQDGKIKVWRIRSGQCLRRLE---------------------------------------------------RAHSEGV 310 (513)
Q Consensus 282 ~~~dg~i~vwd~~~~~~~~~~~---------------------------------------------------~~~~~~v 310 (513)
++.||+++.|+...... .++. ......+
T Consensus 414 cs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~i 492 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQI 492 (577)
T ss_pred ecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCcc
Confidence 99999999999754433 1111 0112346
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeec
Q 010324 311 TSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 388 (513)
Q Consensus 311 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 388 (513)
..+.++|.+...+++..|+.|+++|..+++.+.....|...++++++.|+|.+|++++.|+.+++|.+....++....
T Consensus 493 n~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 493 NKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred ceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 778889999999999999999999999999999999999999999999999999999999999999998766655443
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=5.2e-17 Score=145.20 Aligned_cols=264 Identities=16% Similarity=0.205 Sum_probs=210.6
Q ss_pred eeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010324 216 AECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS 295 (513)
Q Consensus 216 v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~ 295 (513)
...+.++.+|++|+.|+..|.+. .+|+.++.+...+. -...|.++.|-.+.+++|++ ....++||| ..
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlA-a~Dw~t~~L~~Ei~---------v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~ 199 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLA-AFDWVTKKLHFEIN---------VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NN 199 (545)
T ss_pred CeeeeecCCccEEEecCCcccee-eeecccceeeeeee---------hhhhhhhhhhhcchHHHHhh-hhceEEEec-CC
Confidence 45688999999999999999996 99999998877665 35678999999988888887 466899999 66
Q ss_pred cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEE
Q 010324 296 GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV 375 (513)
Q Consensus 296 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 375 (513)
|..+..+. ....|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|...|+|.+
T Consensus 200 GtElHClk--~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSl 277 (545)
T KOG1272|consen 200 GTELHCLK--RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSL 277 (545)
T ss_pred CcEEeehh--hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEe
Confidence 87787775 4567999999999989999999999999999999999999988899999999999889999999999999
Q ss_pred EeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-EEEEeecCccCCCcEEEEEECCCC
Q 010324 376 WDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGKREGGDFVAACVSPKG 454 (513)
Q Consensus 376 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~~ 454 (513)
|...+.+++..+. +|.++|.++++.+.+ .++++++.|..+.|||++.- .+..+.. ..+...+++|..|
T Consensus 278 WSP~skePLvKiL------cH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----p~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 278 WSPNSKEPLVKIL------CHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQLHTYRT----PHPASNLSLSQKG 346 (545)
T ss_pred cCCCCcchHHHHH------hcCCCcceEEECCCC-cEEeecccccceeEeeeccccccceeec----CCCcccccccccc
Confidence 9998887666554 788999999999988 99999999999999999943 3333333 1234567777665
Q ss_pred CEEEEEecCceEEEEEC-CC--ceeeEeeecc--cCCeEEEEEcCCCCEEEEEECCC
Q 010324 455 EWIYCVGEDRNLYCFSH-QS--GKLEHLMKVH--EKDVIGVTHHPHRNLLATYGEDC 506 (513)
Q Consensus 455 ~~l~~g~~dg~i~iwd~-~~--~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~~~dg 506 (513)
+++.+....|.||.- -. +.....+-.| .++|..+.|.|-...|-.|-.-|
T Consensus 347 --lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 347 --LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred --ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 445555678889942 22 1222222223 35899999999777766665444
No 213
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=4.5e-17 Score=145.62 Aligned_cols=230 Identities=14% Similarity=0.195 Sum_probs=188.5
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeE
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE 344 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 344 (513)
-....+.++.+|++|+.|+.-|.+-.+|..+++....+. -...|.++.|..+..++|++- ...++|||- .|..++.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHC 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHC 205 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEee
Confidence 345678899999999999999999999999999888775 567899999998887777765 788999994 7888888
Q ss_pred ecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEE
Q 010324 345 FRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYI 424 (513)
Q Consensus 345 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i 424 (513)
++.+. .|..+.|-|..-+|++++..|.++.-|+.+|+.+..+. ...+.+..++-+|.+ ..+-+|..+|+|.+
T Consensus 206 lk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~------t~~G~~~vm~qNP~N-aVih~GhsnGtVSl 277 (545)
T KOG1272|consen 206 LKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR------TGAGRTDVMKQNPYN-AVIHLGHSNGTVSL 277 (545)
T ss_pred hhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHH------ccCCccchhhcCCcc-ceEEEcCCCceEEe
Confidence 88664 59999999998889999999999999999999887776 345677888888887 88999999999999
Q ss_pred EEccCe-EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEE
Q 010324 425 MTLQGQ-VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 425 ~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 503 (513)
|....+ .+..+. .|.+++.++++.++|+|+++.+.|..++|||++....+.++.. ..+...+++|..| +|| +|
T Consensus 278 WSP~skePLvKiL---cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA-~~ 351 (545)
T KOG1272|consen 278 WSPNSKEPLVKIL---CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLA-LS 351 (545)
T ss_pred cCCCCcchHHHHH---hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-cee-ee
Confidence 998733 333332 3567899999999999999999999999999998876666654 3467788888655 343 44
Q ss_pred CCCeEEecc
Q 010324 504 EDCTMKLWK 512 (513)
Q Consensus 504 ~dg~i~iWd 512 (513)
....|.||.
T Consensus 352 ~G~~v~iw~ 360 (545)
T KOG1272|consen 352 YGDHVQIWK 360 (545)
T ss_pred cCCeeeeeh
Confidence 445799995
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.7e-15 Score=135.75 Aligned_cols=285 Identities=17% Similarity=0.195 Sum_probs=208.5
Q ss_pred ccccCceeEEEECCCCCEE-EEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcE
Q 010324 210 FGTKSHAECARFSPDGQFL-VSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKI 288 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~l-a~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 288 (513)
++|...-+.+..+|||+|+ |+|..--.|+ +||+.+-.+...-.. ....|.-.-.+.|-..++.-..|.+|
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ik-vydlanLSLKFERhl--------Dae~V~feiLsDD~SK~v~L~~DR~I 118 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIK-VYDLANLSLKFERHL--------DAEVVDFEILSDDYSKSVFLQNDRTI 118 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceE-EEEcccceeeeeecc--------cccceeEEEeccchhhheEeecCcee
Confidence 3677777889999999975 5777888998 999987554322111 23455555566666666666778877
Q ss_pred EEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEe
Q 010324 289 KVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS 368 (513)
Q Consensus 289 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 368 (513)
-+.. ..|..-. + .-+..-..++++.-..-|++++....|+-+++..|..+..+....+.++++..++...+|++|+
T Consensus 119 efHa-k~G~hy~-~--RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 119 EFHA-KYGRHYR-T--RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGT 194 (703)
T ss_pred eehh-hcCeeee-e--ecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecc
Confidence 7664 2233211 1 1223345667765444566666677899999999999999988889999999999988999999
Q ss_pred CCCcEEEEeCCCCceeEeecCCCCCCCCCc-----eeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCC
Q 010324 369 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDA-----SVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGG 443 (513)
Q Consensus 369 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 443 (513)
.+|.|..||.++...+.++.....+..+.+ .|+++.|..++ -.+++|+.+|.+.+||++.........+ ....
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~kdh-~~e~ 272 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLVKDH-GYEL 272 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceeeccc-CCcc
Confidence 999999999999888777766655444444 49999998875 8899999999999999995544333332 3456
Q ss_pred cEEEEEECCC-CCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 444 DFVAACVSPK-GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 444 ~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
++..+.|-+. +.-.++......++|||-.+|+....+.. ...++.+++-|++.++.++-.++.+..
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred ceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCccee
Confidence 7888888554 23333344567899999999999888764 456999999999999999987776543
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=7.1e-16 Score=131.76 Aligned_cols=203 Identities=21% Similarity=0.198 Sum_probs=163.4
Q ss_pred cccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc---eeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 010324 306 HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK---LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 382 (513)
Q Consensus 306 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 382 (513)
...+|+|.+|++|+..++++.....|.||...... ...+++.|...|+.++|+|..+.|++++.|..-++|....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 45789999999999999999999999999886554 677888999999999999999999999999999999985432
Q ss_pred eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEe--ecCccCCCcEEEEEECCCCCEEEEE
Q 010324 383 CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSF--SSGKREGGDFVAACVSPKGEWIYCV 460 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~g 460 (513)
++++...+..+....+++.|+|.. +.+++++....|.+|-+..+.-.-. .........|+++.|+|++-.+++|
T Consensus 89 ---~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 89 ---TWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred ---eeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 223333334567889999999987 9999999999999998874432211 1223346778999999999999999
Q ss_pred ecCceEEEEECCC------------------ceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 461 GEDRNLYCFSHQS------------------GKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 461 ~~dg~i~iwd~~~------------------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+.|+..++|..-- |+++..+....+.|..+.|+|+|+.|+-.+.|+++.+=|
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 9999999986421 223334444567899999999999999999999998755
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.6e-15 Score=145.68 Aligned_cols=209 Identities=18% Similarity=0.210 Sum_probs=145.8
Q ss_pred CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC---CcEEEEecCCCceeeEecccccceeEEEEccCC
Q 010324 285 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD---STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG 361 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 361 (513)
+..|.+||..... ...+. .+...+.+.+|+|||+.|+.++.+ ..|++||+.+++... +....+....++|+|||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCC-ceEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCC
Confidence 4689999976544 44454 567789999999999999987654 369999998875422 12222334568999999
Q ss_pred CEEEEEe-CCCcEEEE--eCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeEEEEee
Q 010324 362 SRVVTAS-SDCTVKVW--DLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFS 436 (513)
Q Consensus 362 ~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~ 436 (513)
+.|+.++ .+|.+.|| |+.++... .+. .+...+.+..|+|++..+++++..++...+|+++ +.....+
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l- 331 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPS-QLT------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV- 331 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeE-eec------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-
Confidence 9888765 67766555 66655432 222 2344577899999985566666677888888765 3333332
Q ss_pred cCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 437 SGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 437 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.. .. ....|+|+|+++++++.++ +.+||+.+++.......+ ....+.|+|+|++|++++.+|.+.+|.
T Consensus 332 ~~---~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 332 GG---RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred cC---CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEE
Confidence 11 11 3467999999998888755 566999888765433222 335678999999999999999888774
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=3e-14 Score=138.83 Aligned_cols=234 Identities=16% Similarity=0.166 Sum_probs=158.8
Q ss_pred eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCcceeeecccccccCeEE
Q 010324 236 FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ---DGKIKVWRIRSGQCLRRLERAHSEGVTS 312 (513)
Q Consensus 236 ~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 312 (513)
.| ++||.+..... .+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+. .+...+..
T Consensus 183 ~l-~~~d~dg~~~~---------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~-~~~g~~~~ 250 (435)
T PRK05137 183 RL-AIMDQDGANVR---------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVG-NFPGMTFA 250 (435)
T ss_pred EE-EEECCCCCCcE---------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eee-cCCCcccC
Confidence 56 37777543322 23347789999999999999988764 468999999888753 333 35566778
Q ss_pred EEEccCCCEEE-EeeCCCc--EEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeEe
Q 010324 313 LVFSRDGSQIL-STSFDST--ARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DC--TVKVWDLKSTDCLQT 386 (513)
Q Consensus 313 ~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~ 386 (513)
.+|+|||+.|+ +.+.++. |++||+.+++. ..+..+........|+|||+.++..+. +| .|.++|+.++....
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~- 328 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR- 328 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-
Confidence 99999999876 4455554 78889877654 445556666778999999998887764 33 58888887665433
Q ss_pred ecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC--CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC-
Q 010324 387 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT--SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED- 463 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d- 463 (513)
+.. ....+....|+|++..++++.... ..|.+||+.+.....+... ..+....|+|||+.|+..+.+
T Consensus 329 lt~------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~----~~~~~p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 329 ISF------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG----FLVEGPTWAPNGRVIMFFRQTP 398 (435)
T ss_pred eec------CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC----CCCCCCeECCCCCEEEEEEccC
Confidence 221 123456678999984444444333 3688888876555444332 235578899999998876543
Q ss_pred -----ceEEEEECCCceeeEeeecccCCeEEEEEcCC
Q 010324 464 -----RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 495 (513)
Q Consensus 464 -----g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~ 495 (513)
..++++|+..+.. ..+. ..+.+...+|+|-
T Consensus 399 ~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 399 GSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCCCcceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence 3688889876654 3443 3445777888873
No 218
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=6.2e-16 Score=139.23 Aligned_cols=256 Identities=19% Similarity=0.284 Sum_probs=198.1
Q ss_pred ccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEcc--CCCEEEEeeCCCcEEEE
Q 010324 257 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIH 334 (513)
Q Consensus 257 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~ 334 (513)
...+.+|.+.|..+.|+..|..|++|+.|..|.+||..+++....+..+|...|....|-| +...+++++.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 3466679999999999999999999999999999999999999999889999998888988 45679999999999987
Q ss_pred ecCCCce---eeEecccccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCC
Q 010324 335 GLKSGKL---LKEFRGHSSYVNDAIFTNDG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP 410 (513)
Q Consensus 335 d~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 410 (513)
.+..... ...+..|.++|.-++.-|+. ..|.+++.|+.+.-+|++++.+...+.....-....-...+++..|.+.
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 6543322 34456789999999999865 4688999999999999998876555542221111123678899999998
Q ss_pred CeEEEEcCCCcEEEEEccCe-------EEEEeecCc---cCCCcEEEEEECCCCCEEEEEecCceEEEEECCC--c----
Q 010324 411 DHIVVCNKTSSIYIMTLQGQ-------VVKSFSSGK---REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS--G---- 474 (513)
Q Consensus 411 ~~l~~~~~~~~i~i~d~~~~-------~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~---- 474 (513)
..+++++.|..+++||.+.- .+..+...+ .....|++++++.++.-+.+.-.|-.||++...- |
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 99999999999999998621 122222221 2345688999998888888888899999996432 2
Q ss_pred ------eeeE-eeecccC--CeEEEEE-cCCCCEEEEEECCCeEEecc
Q 010324 475 ------KLEH-LMKVHEK--DVIGVTH-HPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 475 ------~~~~-~~~~h~~--~v~~~~~-~p~~~~l~s~~~dg~i~iWd 512 (513)
..+. .+++|.. .|.++-| -|...++++||+=|.|.||+
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 2222 3788865 4667764 57789999999999999997
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.5e-14 Score=140.19 Aligned_cols=218 Identities=16% Similarity=0.245 Sum_probs=147.2
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEE-eeCCCcEEEE--e
Q 010324 262 MHDETVLCIEFSRDSEMLASGSQD---GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILS-TSFDSTARIH--G 335 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~--d 335 (513)
.+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... . .....+.+.+|+|||+.|+. .+.+|...+| |
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-A-NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-e-cCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 367789999999999999887643 3599999998875433 2 23455678999999998874 5667765555 5
Q ss_pred cCCCceeeEecccccceeEEEEccCCCEEEEEeC-CCcEEEEeC--CCCceeEeecCCCCCCCCCceeeEEEecCCCCCe
Q 010324 336 LKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DCTVKVWDL--KSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH 412 (513)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (513)
+.++. ...+..+........|+|||+.++..+. +|...+|.+ .++.... +... ........|+|++ +.
T Consensus 271 ~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~------g~~~~~~~~SpDG-~~ 341 (427)
T PRK02889 271 ADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFT------GSYNTSPRISPDG-KL 341 (427)
T ss_pred CCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecC------CCCcCceEECCCC-CE
Confidence 54443 4555555556677899999998886654 456666654 4443222 2111 1123356899988 55
Q ss_pred EEEEcCCC---cEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc---eEEEEECCCceeeEeeecccCC
Q 010324 413 IVVCNKTS---SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR---NLYCFSHQSGKLEHLMKVHEKD 486 (513)
Q Consensus 413 l~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~ 486 (513)
++..+.++ .|++||+.+.....+.... ......|+|||+.|+.++.++ .+++.+. ++.....+..+.+.
T Consensus 342 Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~----~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~ 416 (427)
T PRK02889 342 LAYISRVGGAFKLYVQDLATGQVTALTDTT----RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGD 416 (427)
T ss_pred EEEEEccCCcEEEEEEECCCCCeEEccCCC----CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCC
Confidence 55444333 6999999865555544321 235678999999998887544 4666676 46666667677788
Q ss_pred eEEEEEcCC
Q 010324 487 VIGVTHHPH 495 (513)
Q Consensus 487 v~~~~~~p~ 495 (513)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 888999884
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=4e-15 Score=135.70 Aligned_cols=244 Identities=16% Similarity=0.200 Sum_probs=149.5
Q ss_pred ceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEE-----cCCCCEEEEEeCCCcEE
Q 010324 215 HAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF-----SRDSEMLASGSQDGKIK 289 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~~~l~s~~~dg~i~ 289 (513)
.+....++-.|++|+..-.+. + ++|+...+...... ..+.+. ......|=+| .|.+--++.|-.-|.|.
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~-l-yv~~~~g~~~~~~p---i~k~~y-~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq 198 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRE-L-YVYSYRGAADLSKP---IDKREY-KGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQ 198 (636)
T ss_pred ceeeccccCCCCEEEEecCCe-E-EEEEccCcchhccc---hhhhcc-cCCCCceecccccccCCCCcceEEeeccCceE
Confidence 455566666788888765543 4 48887743222110 001111 1122333334 34566788888888999
Q ss_pred EEEcCCcceeeecc---cccccCeEEEEEccC-CCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEE--ccCCCE
Q 010324 290 VWRIRSGQCLRRLE---RAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIF--TNDGSR 363 (513)
Q Consensus 290 vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~ 363 (513)
+.|....+..+.+. ......|+|+.|-|. ...++++-.+|.+++||.. +....+...| .+++..
T Consensus 199 ~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~~~~t~p~~~~~k~~~~ 268 (636)
T KOG2394|consen 199 LIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IVCGATAPSYQALKDGDQ 268 (636)
T ss_pred EecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc----------ccccCCCCcccccCCCCe
Confidence 99876532222121 123478999999994 4566777889999999862 1111111111 123333
Q ss_pred EEEEeC-----CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecC
Q 010324 364 VVTASS-----DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSG 438 (513)
Q Consensus 364 l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 438 (513)
+..... +.-+.-|-+-. +.|+.++|+|++ .++++.+.||.++++|.....+.-...
T Consensus 269 f~i~t~ksk~~rNPv~~w~~~~-----------------g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mk- 329 (636)
T KOG2394|consen 269 FAILTSKSKKTRNPVARWHIGE-----------------GSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMK- 329 (636)
T ss_pred eEEeeeeccccCCccceeEecc-----------------ccccceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHH-
Confidence 332221 12233343322 145666777754 777777777777777766433221111
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcC
Q 010324 439 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494 (513)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p 494 (513)
..-+...|+||||||+||++|++|.-|.||.+..++++..-.+|...|+.|+|.|
T Consensus 330 -SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 330 -SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred -hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 1124478999999999999999999999999999999999999999999999983
No 221
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=4.7e-14 Score=121.17 Aligned_cols=278 Identities=12% Similarity=0.132 Sum_probs=187.3
Q ss_pred cCceeEEEECCCCCEEEE-EecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCE-EEEEeCCCcEEE
Q 010324 213 KSHAECARFSPDGQFLVS-CSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM-LASGSQDGKIKV 290 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~-g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~~~dg~i~v 290 (513)
-+.|.-+.|..|..++.. ...|+.|. +|++...+-...+. ....++.+++|||||+. |.+...+-.|.|
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vq-vwsl~Qpew~ckId--------eg~agls~~~WSPdgrhiL~tseF~lriTV 118 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQ-VWSLVQPEWYCKID--------EGQAGLSSISWSPDGRHILLTSEFDLRITV 118 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEE-EEEeecceeEEEec--------cCCCcceeeeECCCcceEeeeecceeEEEE
Confidence 466778899988876554 57788996 99998765444333 26788999999999965 455566889999
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC------------------------------------CcEEEE
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD------------------------------------STARIH 334 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------------------------g~i~i~ 334 (513)
|.+.+.+....- .....+..++|+|||++.+..+.- ..+.+|
T Consensus 119 WSL~t~~~~~~~--~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw 196 (447)
T KOG4497|consen 119 WSLNTQKGYLLP--HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW 196 (447)
T ss_pred EEeccceeEEec--ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe
Confidence 999887654332 234556889999999887765432 123344
Q ss_pred ecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeE-----------------------------
Q 010324 335 GLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ----------------------------- 385 (513)
Q Consensus 335 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------------- 385 (513)
|.--.-.+..+. -.-.+..++|+|.++++++|+.|+.+++.+--+.+...
T Consensus 197 d~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~ 275 (447)
T KOG4497|consen 197 DNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHH 275 (447)
T ss_pred cchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccc
Confidence 321111111111 12458889999999999999999999876543222111
Q ss_pred -------------------------------eecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC--CcEEEEEccCeEE
Q 010324 386 -------------------------------TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT--SSIYIMTLQGQVV 432 (513)
Q Consensus 386 -------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~--~~i~i~d~~~~~~ 432 (513)
.++++.........+.-++|+++. .++++-... +.+.+||++...+
T Consensus 276 cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l 354 (447)
T KOG4497|consen 276 CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKL 354 (447)
T ss_pred ccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhh
Confidence 011111111222345667888875 555554433 5789999986655
Q ss_pred EEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCe
Q 010324 433 KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCT 507 (513)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 507 (513)
..+.. ...+|....|+|....++.+.....+++|...-...+. .+...-.|..++|+-+|..++-++.|..
T Consensus 355 ~avLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 355 HAVLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred hhhhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 44443 24568999999999999999989999999976544443 3334467999999999999999998863
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.1e-14 Score=139.66 Aligned_cols=234 Identities=18% Similarity=0.177 Sum_probs=157.8
Q ss_pred eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCcceeeecccccccCeEE
Q 010324 236 FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD---GKIKVWRIRSGQCLRRLERAHSEGVTS 312 (513)
Q Consensus 236 ~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~ 312 (513)
.|. +||...+... .+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++..... .......+
T Consensus 185 ~l~-i~D~~g~~~~---------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~--~~~g~~~~ 252 (433)
T PRK04922 185 ALQ-VADSDGYNPQ---------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA--SFRGINGA 252 (433)
T ss_pred EEE-EECCCCCCce---------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec--cCCCCccC
Confidence 574 8887544322 223367789999999999999988743 46999999887754322 23445567
Q ss_pred EEEccCCCEEEE-eeCCC--cEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC-CCc--EEEEeCCCCceeEe
Q 010324 313 LVFSRDGSQILS-TSFDS--TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DCT--VKVWDLKSTDCLQT 386 (513)
Q Consensus 313 ~~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~ 386 (513)
.+|+|||+.++. .+.+| .|++||+.+++. ..+..+.......+|+|||+.++.++. +|. |.++|+.+++....
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l 331 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL 331 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 899999998764 45555 599999987764 445555555678899999998887764 444 66677776654322
Q ss_pred ecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC--cEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC-
Q 010324 387 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED- 463 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d- 463 (513)
.. .........|+|++..++++...++ .|.+||+.+.....+.... ......|+|||++++..+.+
T Consensus 332 -t~------~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~----~~~~p~~spdG~~i~~~s~~~ 400 (433)
T PRK04922 332 -TF------QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS----LDESPSFAPNGSMVLYATREG 400 (433)
T ss_pred -ec------CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC----CCCCceECCCCCEEEEEEecC
Confidence 11 1123346899999844444433333 6899999865555444321 23456899999998877753
Q ss_pred --ceEEEEECCCceeeEeeecccCCeEEEEEcC
Q 010324 464 --RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494 (513)
Q Consensus 464 --g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p 494 (513)
+.+++++.. +.....+..+.+.+...+|+|
T Consensus 401 g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 401 GRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 468888885 445556666667788888987
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=3.1e-14 Score=121.80 Aligned_cols=235 Identities=14% Similarity=0.228 Sum_probs=159.5
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeccc-ccccCeEEEEEccCCCEEE-EeeCC------CcEEEEec
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER-AHSEGVTSLVFSRDGSQIL-STSFD------STARIHGL 336 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~d------g~i~i~d~ 336 (513)
....+++|+.|...++.|..+| .++|+.+.-+....... ...-.+..+-| ..++++ +|+.+ +.|.|||-
T Consensus 6 ~~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence 3455699999999999988665 89999876333222110 11122223333 334554 44433 46999996
Q ss_pred CCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE
Q 010324 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLK-STDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV 415 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 415 (513)
...+++.++. ...+|.++.+.++ .+++.- ++.|.+|... +.+.++.+...... ....+ ..|.....+++
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NP----kGlC~--~~~~~~k~~La 152 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP----KGLCS--LCPTSNKSLLA 152 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCC----CceEe--ecCCCCceEEE
Confidence 6667777766 5678999999876 455554 5679999887 44555554432211 11222 33333233333
Q ss_pred --EcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCce-EEEEECCCceeeEeeecc--cCCeEEE
Q 010324 416 --CNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRN-LYCFSHQSGKLEHLMKVH--EKDVIGV 490 (513)
Q Consensus 416 --~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~h--~~~v~~~ 490 (513)
|..-|.|.+.|+.............|...|.+++.+-+|..+|+++..|+ |+|||..+|+++..++.. ...|.++
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 44669999999984443211122346778999999999999999999997 899999999999988743 3579999
Q ss_pred EEcCCCCEEEEEECCCeEEecc
Q 010324 491 THHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 491 ~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+|||+..+||++|+-|+|+|+.
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEE
Confidence 9999999999999999999974
No 224
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.8e-14 Score=135.82 Aligned_cols=296 Identities=14% Similarity=0.241 Sum_probs=210.0
Q ss_pred eeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccc-------cccccccccccccCCccEEEEEEcCCCCEE
Q 010324 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLK-------KDLQYQADETFMMHDETVLCIEFSRDSEML 279 (513)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~-------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 279 (513)
.+....+....|++|+....++|+|+.||.++ +-.+.+...- ........+++.||...|.-+.|+.+.+.|
T Consensus 8 ki~iPnnvkL~c~~WNke~gyIAcgG~dGlLK-VlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 8 KIGIPNNVKLHCAEWNKESGYIACGGADGLLK-VLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred ccCCCCCceEEEEEEcccCCeEEeccccceeE-EEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 34445667789999999999999999999998 8776543221 112234456889999999999999999999
Q ss_pred EEEeCCCcEEEEEcCCcceeeecc-cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEc
Q 010324 280 ASGSQDGKIKVWRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT 358 (513)
Q Consensus 280 ~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 358 (513)
-++..+|.|.||-+-.|+-...+. ....+.|.+++|+.||..++....||.|.+=.+. |..+.--.-.......+.|+
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws 165 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWS 165 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchheccceeec
Confidence 999999999999998887554443 2456789999999999999999999999887763 43332211122335578899
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCc-----eeEeecCCCCCCCCCceeeEEEec-------CCCCCeEEEEcCCCcEEEEE
Q 010324 359 NDGSRVVTASSDCTVKVWDLKSTD-----CLQTFKPPPPLRGGDASVNSVHLF-------PKNPDHIVVCNKTSSIYIMT 426 (513)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~-------~~~~~~l~~~~~~~~i~i~d 426 (513)
+|.+.++.+-.+|.+.+||....- .................+..+.|. |.+...++++..+|.+.+..
T Consensus 166 ~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 166 EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR 245 (1189)
T ss_pred ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence 999988888889999999965321 000011001111122235555554 33447899999999998887
Q ss_pred ccCeE-EEEeecCccCCCcEEEEEECCCCCEEEEEecCc---------eEEEEECCCceeeEeeecccCCeEEEEEcCCC
Q 010324 427 LQGQV-VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR---------NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR 496 (513)
Q Consensus 427 ~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---------~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~ 496 (513)
-.... ...+.. +-.++.+.|+++|.+|++++.+. .|.+|. .-|+.+.+++.....|++++|-..|
T Consensus 246 ~eND~~Pvv~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~g 320 (1189)
T KOG2041|consen 246 SENDPEPVVVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTG 320 (1189)
T ss_pred hcCCCCCeEEec----ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCc
Confidence 65332 222222 24578899999999999988542 455555 4578888999999999999998777
Q ss_pred CEEEEEECCCeEEe
Q 010324 497 NLLATYGEDCTMKL 510 (513)
Q Consensus 497 ~~l~s~~~dg~i~i 510 (513)
-.+|.+ .|+.|.+
T Consensus 321 LriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 321 LRIAIA-VDSFIYF 333 (1189)
T ss_pred eEEEEE-ecceEEE
Confidence 666655 3666654
No 225
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.65 E-value=3.4e-14 Score=120.99 Aligned_cols=156 Identities=17% Similarity=0.325 Sum_probs=112.7
Q ss_pred eEEEECCCCCEEEEEec----------CCeEEEEEecccc-ccccccccccccccccCCccEEEEEEcCCCCEEEEE--e
Q 010324 217 ECARFSPDGQFLVSCSF----------DGFIEVVWDYLSG-KLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG--S 283 (513)
Q Consensus 217 ~~~~~s~~g~~la~g~~----------dg~i~~iwd~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~ 283 (513)
..+.|+|+|++|++-.. -|... +|.++.. .....+.. ...++|.+++|+|+|+.+|+. .
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~-l~~~~~~~~~~~~i~l-------~~~~~I~~~~WsP~g~~favi~g~ 80 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFE-LFYLNEKNIPVESIEL-------KKEGPIHDVAWSPNGNEFAVIYGS 80 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEE-EEEEecCCCccceeec-------cCCCceEEEEECcCCCEEEEEEcc
Confidence 34789999998876543 12332 4544322 11111111 134579999999999987655 3
Q ss_pred CCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC---CcEEEEecCCCceeeEecccccceeEEEEccC
Q 010324 284 QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD---STARIHGLKSGKLLKEFRGHSSYVNDAIFTND 360 (513)
Q Consensus 284 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 360 (513)
.++.|.+||++ ++.+..+. ...+..+.|+|+|+++++|+.+ |.|.+||.++.+.+.... |. .++.++|+|+
T Consensus 81 ~~~~v~lyd~~-~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPd 154 (194)
T PF08662_consen 81 MPAKVTLYDVK-GKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPD 154 (194)
T ss_pred CCcccEEEcCc-ccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCC
Confidence 56799999986 66666653 4677899999999999998754 679999999888887765 33 4789999999
Q ss_pred CCEEEEEeC------CCcEEEEeCCCCceeEee
Q 010324 361 GSRVVTASS------DCTVKVWDLKSTDCLQTF 387 (513)
Q Consensus 361 ~~~l~~~~~------dg~i~iwd~~~~~~~~~~ 387 (513)
|+++++++. |..++||+.. |+.+...
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 999999874 6789999984 5555443
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=9.9e-15 Score=133.16 Aligned_cols=174 Identities=20% Similarity=0.323 Sum_probs=132.7
Q ss_pred CCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCC-----
Q 010324 222 SPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-SEMLASGSQDGKIKVWRIRS----- 295 (513)
Q Consensus 222 s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~vwd~~~----- 295 (513)
.|+|--|.+|-.-|.+. +.|....+..+.+.... .-....|+|+.|-|. ...++.+-.+|.+.+||..-
T Consensus 182 ~~~g~dllIGf~tGqvq-~idp~~~~~sklfne~r----~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t 256 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQ-LIDPINFEVSKLFNEER----LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT 256 (636)
T ss_pred CCCCcceEEeeccCceE-EecchhhHHHHhhhhcc----cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCC
Confidence 35677788888889885 76665533222222111 113578999999994 44566677899999997531
Q ss_pred ---------cc--------------eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccce
Q 010324 296 ---------GQ--------------CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV 352 (513)
Q Consensus 296 ---------~~--------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 352 (513)
+. ++..+. -....|...+|+|||++||+.+.||.++|+|..+.+.+..++..-+..
T Consensus 257 ~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~-~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGL 335 (636)
T KOG2394|consen 257 APSYQALKDGDQFAILTSKSKKTRNPVARWH-IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGL 335 (636)
T ss_pred CCcccccCCCCeeEEeeeeccccCCccceeE-eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccce
Confidence 00 111111 124578899999999999999999999999999888888877777889
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecC
Q 010324 353 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP 407 (513)
Q Consensus 353 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (513)
.|++|+|||+++++|++|.-|.||.+...+.+..-. +|.+.|..++|.|
T Consensus 336 LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq------GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ------GHKSWVSVVAFDP 384 (636)
T ss_pred EEEEEcCCccEEEecCCcceEEEEEeccceEEEecc------ccccceeeEeecc
Confidence 999999999999999999999999999888776644 8899999999987
No 227
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=6e-14 Score=123.35 Aligned_cols=246 Identities=17% Similarity=0.264 Sum_probs=163.8
Q ss_pred cccCceeEEEECCCCC--EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcE
Q 010324 211 GTKSHAECARFSPDGQ--FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKI 288 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~--~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 288 (513)
.-...|+.++|.-+++ .+...+.|..+. +..+......... ...........+|..++.. ...|++|-.+|.+
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~-~~~~~E~~~~s~~--~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l 127 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLP-KFVIEEFEISSSL--DDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNL 127 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccc-cccccCCcccccc--ccccccccccccccchhhc--CCEEEEEecCCcE
Confidence 4456677888876554 455554666664 5555554443322 1112333456777777765 3478888899999
Q ss_pred EEEEcCCcc----eeeecccccccCeEEEEEccCCCE-EEEeeCC--CcEEEEecCCCceeeEecccc---------cce
Q 010324 289 KVWRIRSGQ----CLRRLERAHSEGVTSLVFSRDGSQ-ILSTSFD--STARIHGLKSGKLLKEFRGHS---------SYV 352 (513)
Q Consensus 289 ~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d--g~i~i~d~~~~~~~~~~~~~~---------~~v 352 (513)
.+|....+. .+..+ .....+..+.-++...+ +++|+.. ..+.+||+...+.+.+-+.-. -.+
T Consensus 128 ~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 128 QVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWI 205 (412)
T ss_pred EEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeee
Confidence 999988543 22222 23456677777765544 5568888 889999998876554433211 123
Q ss_pred eEEEEccC--CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe
Q 010324 353 NDAIFTND--GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ 430 (513)
Q Consensus 353 ~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 430 (513)
+++.|.+. ...|++++.-+.+++||.+.++ +
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-----------------------------------------------R 238 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-----------------------------------------------R 238 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCcccC-----------------------------------------------c
Confidence 33444433 3444444444444444444321 2
Q ss_pred EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEe-eecccCCeEEEEEcCCCCEEEEEECCCeEE
Q 010324 431 VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHL-MKVHEKDVIGVTHHPHRNLLATYGEDCTMK 509 (513)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~ 509 (513)
++..+.. ...+++++...|+|++|++|..-|.+..||.+.++.... +.+-.+.|+++..+|.++++++||-|..||
T Consensus 239 PV~~fd~---~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 239 PVAQFDF---LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred ceeEecc---ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEE
Confidence 2222222 244688999999999999999999999999999998876 888999999999999999999999999999
Q ss_pred eccC
Q 010324 510 LWKP 513 (513)
Q Consensus 510 iWdp 513 (513)
|+|.
T Consensus 316 IhD~ 319 (412)
T KOG3881|consen 316 IHDI 319 (412)
T ss_pred Eeec
Confidence 9984
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.4e-13 Score=133.29 Aligned_cols=217 Identities=18% Similarity=0.225 Sum_probs=145.4
Q ss_pred cccCceeEEEECCCCCEEEEEec---CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE-eCCC
Q 010324 211 GTKSHAECARFSPDGQFLVSCSF---DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG-SQDG 286 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~---dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg 286 (513)
.+...+.+.+|||||+.||..+. +..+ ++|++.+++..... . ....+...+|+|||+.|+.. +.+|
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i-~i~dl~~G~~~~l~------~---~~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSAL-VIQTLANGAVRQVA------S---FPRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEE-EEEECCCCCeEEcc------C---CCCCcCCeEECCCCCEEEEEEcCCC
Confidence 45668899999999999987642 3467 48998877533211 1 22334568999999988865 3344
Q ss_pred --cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC-C--cEEEEecCCCceeeEecccccceeEEEEccCC
Q 010324 287 --KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD-S--TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG 361 (513)
Q Consensus 287 --~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 361 (513)
.|.+||+.+++... +. .+...+....|+|||+.|+.++.+ + .|+++|+.+++. ..+...........|+|||
T Consensus 266 ~~~I~~~d~~tg~~~~-lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG 342 (429)
T PRK03629 266 SLNLYVMDLASGQIRQ-VT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDG 342 (429)
T ss_pred CcEEEEEECCCCCEEE-cc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCC
Confidence 58999998887544 33 334567889999999999877754 3 455557766544 3343344456678999999
Q ss_pred CEEEEEeCC---CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC---cEEEEEccCeEEEEe
Q 010324 362 SRVVTASSD---CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS---SIYIMTLQGQVVKSF 435 (513)
Q Consensus 362 ~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~---~i~i~d~~~~~~~~~ 435 (513)
++++..+.+ ..|.+||+.++... .+... ....+..|+|++ ..++.++.++ .++++++++.....+
T Consensus 343 ~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-------~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 343 KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-------FLDETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRFKARL 413 (429)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-EeCCC-------CCCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCCeEEC
Confidence 998877653 35888999887643 23211 122356799988 5555555454 377888887776666
Q ss_pred ecCccCCCcEEEEEECC
Q 010324 436 SSGKREGGDFVAACVSP 452 (513)
Q Consensus 436 ~~~~~~~~~~~~~~~s~ 452 (513)
.. +.+.+...+|+|
T Consensus 414 ~~---~~~~~~~p~Wsp 427 (429)
T PRK03629 414 PA---TDGQVKFPAWSP 427 (429)
T ss_pred cc---CCCCcCCcccCC
Confidence 54 234466677776
No 229
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=7.2e-14 Score=120.74 Aligned_cols=293 Identities=17% Similarity=0.244 Sum_probs=193.2
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccC------------CccEEEEEEcCCCC-
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMH------------DETVLCIEFSRDSE- 277 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~~~~~~- 277 (513)
...+-|.++.|...|.+||||..+|.| +++.-..... ..+. ....+..| ...|..+.|.+++.
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRV-v~f~r~~~~~-~ey~--~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRV-VLFEREKLYK-GEYN--FQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeE-EEeecccccc-ccee--eeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 345668999999999999999999999 4876543221 1111 11122222 35789999998654
Q ss_pred -EEEEEeCCCcEEEEEcCCcc-----------------------------------eeeecccccccCeEEEEEccCCCE
Q 010324 278 -MLASGSQDGKIKVWRIRSGQ-----------------------------------CLRRLERAHSEGVTSLVFSRDGSQ 321 (513)
Q Consensus 278 -~l~s~~~dg~i~vwd~~~~~-----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~ 321 (513)
.++..+.|.+|++|.+.... +.+.+...|...|+++.++.|+..
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 56677789999999875321 123333578888999999999998
Q ss_pred EEEeeCCCcEEEEecCCCcee---eEeccc-----ccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCce----eEeec
Q 010324 322 ILSTSFDSTARIHGLKSGKLL---KEFRGH-----SSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDC----LQTFK 388 (513)
Q Consensus 322 l~~~~~dg~i~i~d~~~~~~~---~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~ 388 (513)
++++. |-.|.+|++.-.... ..++.+ ...|++..|+| ..+.++..+..|+|++.|++.... ...+.
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 88876 888999988643222 222222 35688999999 467888899999999999995321 11122
Q ss_pred CCCC------CCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeEEEEeecCccC---------CC---cEEEE
Q 010324 389 PPPP------LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKRE---------GG---DFVAA 448 (513)
Q Consensus 389 ~~~~------~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~---------~~---~~~~~ 448 (513)
.+.. ....-.+|..+.|++.+ .++++ -.--+|.+||++ .+.+..+..+... .. .-..+
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sG-ryils-RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSG-RYILS-RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCC-cEEEE-eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 1111 11123568889999876 55443 344689999995 5555555443211 11 12468
Q ss_pred EECCCCCEEEEEecCceEEEEECCCceeeE--------------------eee-cc-------------cCCeEEEEEcC
Q 010324 449 CVSPKGEWIYCVGEDRNLYCFSHQSGKLEH--------------------LMK-VH-------------EKDVIGVTHHP 494 (513)
Q Consensus 449 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~--------------------~~~-~h-------------~~~v~~~~~~p 494 (513)
+|+-++.++++|+..+.+++++...|.... ... +. ...+...+|||
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp 415 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHP 415 (433)
T ss_pred EEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCC
Confidence 899999999999999999999965442110 000 10 11255678999
Q ss_pred CCCEEEEEECCCeEEec
Q 010324 495 HRNLLATYGEDCTMKLW 511 (513)
Q Consensus 495 ~~~~l~s~~~dg~i~iW 511 (513)
..+.+|.+..+. +.|+
T Consensus 416 ~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 416 KENSIAVAATNN-LYIF 431 (433)
T ss_pred ccceeeeeecCc-eEEe
Confidence 999999887654 5554
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.8e-13 Score=132.10 Aligned_cols=204 Identities=18% Similarity=0.270 Sum_probs=141.8
Q ss_pred CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeC---CCcEEEEecCCCceeeEecccccceeEEEEccCCC
Q 010324 286 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF---DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 362 (513)
..|.++|... ...+.+. .+...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+....|+|||+
T Consensus 182 ~~l~~~d~dg-~~~~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC
Confidence 3788899754 4444454 56778999999999999988764 468999999887653 4444566778899999999
Q ss_pred EEE-EEeCCCc--EEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC--cEEEEEccCeEEEEeec
Q 010324 363 RVV-TASSDCT--VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVVKSFSS 437 (513)
Q Consensus 363 ~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~~ 437 (513)
.|+ +.+.++. |.+||+.++.... +. .+........|+|++..++++...++ .|+++|+.+.....+..
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~ 331 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTR-LT------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF 331 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEE-cc------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec
Confidence 876 4455555 7777988776433 22 23334567899999855555554444 68888888765555543
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecC---ceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEEC
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGED---RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE 504 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 504 (513)
. ...+....|+|+|+.|+..+.+ ..|.+||..++.. ..+. ....+....|+|||+.|+..+.
T Consensus 332 ~---~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 332 G---GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred C---CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEc
Confidence 2 2335567899999999887643 3688999866543 2332 2235678899999998876654
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=2.4e-12 Score=110.48 Aligned_cols=272 Identities=16% Similarity=0.252 Sum_probs=181.7
Q ss_pred eeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEE-EeCC------CcE
Q 010324 216 AECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS-GSQD------GKI 288 (513)
Q Consensus 216 v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~~~d------g~i 288 (513)
...++|+.|...+++|..+| .+ ||+.+.-+....... ....-.+.-|-| ..++|+- |+.+ +.|
T Consensus 8 ~lsvs~NQD~ScFava~~~G-fr-iyn~~P~ke~~~r~~------~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkv 77 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FR-IYNCDPFKESASRQF------IDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKV 77 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eE-EEecCchhhhhhhcc------ccCchhhhhHhh--hhceEEEecCCCCCCCCCceE
Confidence 34489999999999999888 45 898875222111111 001112222222 2334443 3322 479
Q ss_pred EEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecC-CCceeeEeccc--ccceeEEEEccCCCEEE
Q 010324 289 KVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK-SGKLLKEFRGH--SSYVNDAIFTNDGSRVV 365 (513)
Q Consensus 289 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~--~~~v~~~~~~~~~~~l~ 365 (513)
.|||=...+++.++. ...+|.++.+.++ .|++.- .+.|++|... +.+.+..+... .....+++-+.+...|+
T Consensus 78 iIWDD~k~~~i~el~--f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 78 IIWDDLKERCIIELS--FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred EEEecccCcEEEEEE--eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence 999966677777764 7889999999865 566655 6889999987 44555555432 22243333333434444
Q ss_pred E-EeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc-EEEEEcc-CeEEEEeecCccCC
Q 010324 366 T-ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS-IYIMTLQ-GQVVKSFSSGKREG 442 (513)
Q Consensus 366 ~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~-i~i~d~~-~~~~~~~~~~~~~~ 442 (513)
. |-.-|.|+|-|+...+.- ++....+|+..|.+++.+-++ ..+++++..|+ |++||.. |..+..+..+. ..
T Consensus 153 fPg~k~GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~ 226 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPN----APSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRRGV-DR 226 (346)
T ss_pred cCCCccceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeecCC-ch
Confidence 4 345699999999875542 233345899999999999988 99999999886 8999998 66777777665 45
Q ss_pred CcEEEEEECCCCCEEEEEecCceEEEEECCCceeeE------------------------eeecccCCeEEEEEcCCCCE
Q 010324 443 GDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEH------------------------LMKVHEKDVIGVTHHPHRNL 498 (513)
Q Consensus 443 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~------------------------~~~~h~~~v~~~~~~p~~~~ 498 (513)
..+.+++|||++.+|+++++.|++.||.++....-. .+.-..++..-++|-.+.+.
T Consensus 227 A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~ns 306 (346)
T KOG2111|consen 227 ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNT 306 (346)
T ss_pred heEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCe
Confidence 679999999999999999999999999886532111 11122445556677766566
Q ss_pred EEEEECCCeE
Q 010324 499 LATYGEDCTM 508 (513)
Q Consensus 499 l~s~~~dg~i 508 (513)
++..+.||+-
T Consensus 307 vi~i~~Dgsy 316 (346)
T KOG2111|consen 307 VIAICADGSY 316 (346)
T ss_pred EEEEEeCCcE
Confidence 6667777764
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.62 E-value=9.2e-12 Score=117.29 Aligned_cols=274 Identities=18% Similarity=0.232 Sum_probs=177.3
Q ss_pred ccCceeEEEECCCCCEEEEEec----CCeEEEEEecccc--ccccccccccccccccCCccEEEEEEcCCCCEEEEEeC-
Q 010324 212 TKSHAECARFSPDGQFLVSCSF----DGFIEVVWDYLSG--KLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ- 284 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~----dg~i~~iwd~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~- 284 (513)
.......++++|++++|.+... +|.|. .|++... .+.. +. ...........++++|++++|+++..
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~-~~~i~~~~g~L~~-~~-----~~~~~g~~p~~i~~~~~g~~l~vany~ 107 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVS-SYRIDPDTGTLTL-LN-----SVPSGGSSPCHIAVDPDGRFLYVANYG 107 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEE-EEEEETTTTEEEE-EE-----EEEESSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEE-EEEECCCcceeEE-ee-----eeccCCCCcEEEEEecCCCEEEEEEcc
Confidence 3445677899999999999876 56884 8887764 3221 11 11113455678999999999999875
Q ss_pred CCcEEEEEcCC-cceeee---cc---------cccccCeEEEEEccCCCEEEEeeC-CCcEEEEecCCCc--ee--eEec
Q 010324 285 DGKIKVWRIRS-GQCLRR---LE---------RAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKSGK--LL--KEFR 346 (513)
Q Consensus 285 dg~i~vwd~~~-~~~~~~---~~---------~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~~--~~~~ 346 (513)
+|.|.++++.. |..... +. ........++.|+|+++++++... ...|.+|++.... .. ..+.
T Consensus 108 ~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~ 187 (345)
T PF10282_consen 108 GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK 187 (345)
T ss_dssp TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE
T ss_pred CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc
Confidence 89999999986 433222 11 123456789999999999888654 3579999987654 21 2222
Q ss_pred -ccccceeEEEEccCCCEEEEEe-CCCcEEEEeCC--CCc--eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC
Q 010324 347 -GHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWDLK--STD--CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS 420 (513)
Q Consensus 347 -~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 420 (513)
........++|+|+++++.+.. .++.|.++++. ++. ....+...............+.++|++..++++....+
T Consensus 188 ~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~ 267 (345)
T PF10282_consen 188 VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN 267 (345)
T ss_dssp CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence 2345688999999999887665 47789999988 332 22223222111122236788999999966666666788
Q ss_pred cEEEEEcc--CeEEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEEC--CCceeeEeee-cccCCeEEEEE
Q 010324 421 SIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSH--QSGKLEHLMK-VHEKDVIGVTH 492 (513)
Q Consensus 421 ~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~--~~~~~~~~~~-~h~~~v~~~~~ 492 (513)
.|.+|+++ +..+.........+.....++++|+|++|+++. .++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 268 sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 268 SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 99999994 223333333223345588999999999999888 6678998876 5676554432 23345667765
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.61 E-value=6.1e-13 Score=124.87 Aligned_cols=268 Identities=14% Similarity=0.139 Sum_probs=170.5
Q ss_pred EEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccc
Q 010324 228 LVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHS 307 (513)
Q Consensus 228 la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 307 (513)
+++-..+|.+. +.|..+.+.+..+.. ....-..+.|+|||+++++++.||.|.++|+.+++.+.++. ..
T Consensus 9 ~V~~~~~~~v~-viD~~t~~~~~~i~~--------~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~--~G 77 (369)
T PF02239_consen 9 YVVERGSGSVA-VIDGATNKVVARIPT--------GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK--VG 77 (369)
T ss_dssp EEEEGGGTEEE-EEETTT-SEEEEEE---------STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---S
T ss_pred EEEecCCCEEE-EEECCCCeEEEEEcC--------CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe--cC
Confidence 34566789996 999998887766542 22333457899999999999999999999999999999986 34
Q ss_pred cCeEEEEEccCCCEEEEee-CCCcEEEEecCCCceeeEeccc-------ccceeEEEEccCCCEEEEEeC-CCcEEEEeC
Q 010324 308 EGVTSLVFSRDGSQILSTS-FDSTARIHGLKSGKLLKEFRGH-------SSYVNDAIFTNDGSRVVTASS-DCTVKVWDL 378 (513)
Q Consensus 308 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~ 378 (513)
....++++++||++++++. ..+.+.++|.++.+.+..+... ..++..+..+|....++..-. .+.|.+.|.
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 5578899999999998775 5899999999999998887543 346778888888886655554 588888887
Q ss_pred CCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-EEEEeecCc-cCCCcEEEEEECCC---
Q 010324 379 KSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGK-REGGDFVAACVSPK--- 453 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~s~~--- 453 (513)
........-.. ..........|.|++..++++...++.+.++|.... ....+..+. .+..+...+ .+|.
T Consensus 158 ~d~~~~~~~~i-----~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~ 231 (369)
T PF02239_consen 158 SDPKNLKVTTI-----KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGP 231 (369)
T ss_dssp TTSSCEEEEEE-----E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEE
T ss_pred ccccccceeee-----cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcce
Confidence 76543322111 122355678899988566677788889999999844 433333321 122222221 1222
Q ss_pred -------CCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEE----ECCCeEEeccC
Q 010324 454 -------GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATY----GEDCTMKLWKP 513 (513)
Q Consensus 454 -------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~----~~dg~i~iWdp 513 (513)
+...++.-....+.+||..+.+.+..+....++ .-+..||+++++... ...++|.++|.
T Consensus 232 vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~ 301 (369)
T PF02239_consen 232 VWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDK 301 (369)
T ss_dssp EEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEEC
T ss_pred EEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEEC
Confidence 233322223345667888889999999887666 778889999999988 34578888773
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=1.3e-11 Score=116.28 Aligned_cols=271 Identities=17% Similarity=0.251 Sum_probs=178.5
Q ss_pred EEEEecC----CeEEEEEec--cccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC----CCcEEEEEcCCc-
Q 010324 228 LVSCSFD----GFIEVVWDY--LSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ----DGKIKVWRIRSG- 296 (513)
Q Consensus 228 la~g~~d----g~i~~iwd~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----dg~i~vwd~~~~- 296 (513)
+++|+.. +.|. .|++ .++++...- . .........++++|++++|.++.. +|.|..|++...
T Consensus 2 ~~vgsy~~~~~~gI~-~~~~d~~~g~l~~~~------~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~ 73 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIY-VFRFDEETGTLTLVQ------T-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT 73 (345)
T ss_dssp EEEEECCSSSSTEEE-EEEEETTTTEEEEEE------E-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT
T ss_pred EEEEcCCCCCCCcEE-EEEEcCCCCCceEee------e-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc
Confidence 4455555 5774 7777 334332111 1 113456678899999999999877 468999988764
Q ss_pred -ce--eeecccccccCeEEEEEccCCCEEEEeeC-CCcEEEEecCC-CceeeE---ec----------ccccceeEEEEc
Q 010324 297 -QC--LRRLERAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKS-GKLLKE---FR----------GHSSYVNDAIFT 358 (513)
Q Consensus 297 -~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~~---~~----------~~~~~v~~~~~~ 358 (513)
+. +.+.. ........++++|++++|+++.. +|.|.++++.. +..... +. .......++.++
T Consensus 74 g~L~~~~~~~-~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 74 GTLTLLNSVP-SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS 152 (345)
T ss_dssp TEEEEEEEEE-ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred ceeEEeeeec-cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence 32 23332 23456678999999999998875 88999999976 333222 11 123457789999
Q ss_pred cCCCEEEEEeC-CCcEEEEeCCCCc--ee--EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeE
Q 010324 359 NDGSRVVTASS-DCTVKVWDLKSTD--CL--QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQV 431 (513)
Q Consensus 359 ~~~~~l~~~~~-dg~i~iwd~~~~~--~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~ 431 (513)
|+|+++++... ...|.+|++.... .. ..+.. ........+.|+|++...+++...++.|.++++. ...
T Consensus 153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-----~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-----PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC-----STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc-----ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence 99998887653 4579999987654 21 22221 2345678899999986777788888999999987 322
Q ss_pred EE---EeecC---ccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECC--Cce--eeEeeecccCCeEEEEEcCCCCEEE
Q 010324 432 VK---SFSSG---KREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQ--SGK--LEHLMKVHEKDVIGVTHHPHRNLLA 500 (513)
Q Consensus 432 ~~---~~~~~---~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~--~~~--~~~~~~~h~~~v~~~~~~p~~~~l~ 500 (513)
.. .+... .........++++|||++|+++. ..+.|.+|++. +++ .+..+.........++++|+|++|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 228 LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEE
T ss_pred eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEE
Confidence 22 22221 11122577899999999998887 67789999983 343 3344444445589999999999998
Q ss_pred EEE-CCCeEEecc
Q 010324 501 TYG-EDCTMKLWK 512 (513)
Q Consensus 501 s~~-~dg~i~iWd 512 (513)
++. .++.|.+|+
T Consensus 308 Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 308 VANQDSNTVSVFD 320 (345)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEecCCCeEEEEE
Confidence 887 667888874
No 235
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=2.8e-14 Score=118.84 Aligned_cols=234 Identities=18% Similarity=0.262 Sum_probs=167.0
Q ss_pred eccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEecccccccccc------------
Q 010324 185 LFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDL------------ 252 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~------------ 252 (513)
++.+........|........-.++..|...|+.+.--|+ ..|.+-+.|+.+ ++|++..+..+..-
T Consensus 28 L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L-~lw~ia~s~~i~i~Si~~nslgFCrf 105 (323)
T KOG0322|consen 28 LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL-ILWTIAYSAFISIHSIVVNSLGFCRF 105 (323)
T ss_pred hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE-EEEEccCcceEEEeeeeccccccccc
Confidence 3344444455566666666667777677888888888887 568888889999 59988653221100
Q ss_pred -------------ccccc--------------------cccccCCccEEEEEEcC-CCC--EEEEEeCCCcEEEEEcCCc
Q 010324 253 -------------QYQAD--------------------ETFMMHDETVLCIEFSR-DSE--MLASGSQDGKIKVWRIRSG 296 (513)
Q Consensus 253 -------------~~~~~--------------------~~~~~h~~~v~~l~~~~-~~~--~l~s~~~dg~i~vwd~~~~ 296 (513)
.+... ..-.+..+.+.|..|.. ++. ++++|-.+|.+.+||+.++
T Consensus 106 Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~ 185 (323)
T KOG0322|consen 106 SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTG 185 (323)
T ss_pred eeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCC
Confidence 00000 00011234566666543 232 5667788999999999987
Q ss_pred ceeeecc---------cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC--ce--eeEecccccceeEEEEccCCCE
Q 010324 297 QCLRRLE---------RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG--KL--LKEFRGHSSYVNDAIFTNDGSR 363 (513)
Q Consensus 297 ~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~ 363 (513)
..+..+. ..|..+|.++.|.+.-+.=++|+.+..+..|+++.. .. -..+.-.+..|..+..-||++.
T Consensus 186 ~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KI 265 (323)
T KOG0322|consen 186 DKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKI 265 (323)
T ss_pred ceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcE
Confidence 4332221 268899999999886666678888888889987543 21 1222223456889999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEc
Q 010324 364 VVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL 427 (513)
Q Consensus 364 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~ 427 (513)
+++++.||.|++|+.++.+++..++ -|...+++++|+|+. .++++++.|++|.+|++
T Consensus 266 lATAGWD~RiRVyswrtl~pLAVLk------yHsagvn~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNPLAVLK------YHSAGVNAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCCchhhhh------hhhcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence 9999999999999999998887766 567899999999986 89999999999999986
No 236
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=5.5e-13 Score=122.81 Aligned_cols=269 Identities=16% Similarity=0.216 Sum_probs=174.7
Q ss_pred ceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE-----eC-----
Q 010324 215 HAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG-----SQ----- 284 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-----~~----- 284 (513)
.....++|++|+++|.+.. ..++ |++..++..+... ....+.++.|+|.|.+|.+- ..
T Consensus 36 ~~~v~~~S~~G~lfA~~~~-~~v~-i~~~~~~~~~lt~----------~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~ 103 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDN-QVVK-VFEIATLKVVLCV----------ELKKTYDLLFSPKGNYLLTWEPWAIYGPKNAS 103 (566)
T ss_pred cceeEEEcCCCcEEEEEcC-CeEE-EEEccCCcEEEEe----------ccceeeeeeecccccccccccccccccCCCCC
Confidence 3667889999999998774 4565 8887776532221 12378999999999988762 11
Q ss_pred CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCC--
Q 010324 285 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS-- 362 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 362 (513)
.-.+.+|+++++.....+....... ++..|++|..+.+ --..+.+++|++.+.+.+. -+-|...|+.+.++|.+.
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~ 180 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPP 180 (566)
T ss_pred CCceeeeeeccceehhheehhhhcC-cccccccchhhhh-hhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCc
Confidence 2357799999966555554323332 5777777654332 2224566777665432211 111334455555555311
Q ss_pred EEEE-----EeCCCcEEEEeC---------------------------------------------------------CC
Q 010324 363 RVVT-----ASSDCTVKVWDL---------------------------------------------------------KS 380 (513)
Q Consensus 363 ~l~~-----~~~dg~i~iwd~---------------------------------------------------------~~ 380 (513)
.+++ .+.-+.+++|.. ..
T Consensus 181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 2221 122233444433 31
Q ss_pred CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE-EcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEE
Q 010324 381 TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV-CNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYC 459 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 459 (513)
..+...+ ...++|.++.|+|.+..+.++ |..-..+.++|+++..+..+..+ +-.++-|+|.|++++.
T Consensus 261 ~s~~V~L-------~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~eg-----pRN~~~fnp~g~ii~l 328 (566)
T KOG2315|consen 261 ESVSVPL-------LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEG-----PRNTAFFNPHGNIILL 328 (566)
T ss_pred ceEEEec-------CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCC-----CccceEECCCCCEEEE
Confidence 1111111 236799999999998665444 45667899999999988887654 4568999999999998
Q ss_pred Eec---CceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEEC------CCeEEecc
Q 010324 460 VGE---DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE------DCTMKLWK 512 (513)
Q Consensus 460 g~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~------dg~i~iWd 512 (513)
++- .|.|-+||+.+.+++..+.+-. -+-+.|+|||.+|+|++. |+.++||+
T Consensus 329 AGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 329 AGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred eecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 884 5789999999988888876543 456899999999998874 67788885
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.5e-13 Score=132.21 Aligned_cols=212 Identities=17% Similarity=0.188 Sum_probs=142.6
Q ss_pred CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC---CcEEEEecCCCceeeEecccccceeEEEEccCCC
Q 010324 286 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD---STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 362 (513)
..|.+||... ...+.+. .+...+.+.+|+|||+.|+.++.+ ..|++||+.+++... +....+...+..|+|||+
T Consensus 184 ~~l~i~D~~g-~~~~~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCC
Confidence 3689999754 4444454 466789999999999999987743 469999998776533 333444556789999999
Q ss_pred EEEE-EeCCC--cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc--EEEEEccCeEEEEeec
Q 010324 363 RVVT-ASSDC--TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS--IYIMTLQGQVVKSFSS 437 (513)
Q Consensus 363 ~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~--i~i~d~~~~~~~~~~~ 437 (513)
.++. .+.+| .|++||+.+++... +. .+........|+|++..++++...++. |+++++.+.....+..
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~ 333 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTR-LT------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF 333 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEE-Cc------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec
Confidence 7764 45555 59999998876433 22 222334567999998555555555554 6667776544444432
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecCc---eEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECC---CeEEec
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGEDR---NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED---CTMKLW 511 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d---g~i~iW 511 (513)
. +......+|+|+|++|+..+.++ .|++||+.+++... +. +........|+|||++++..+.+ +.|.+|
T Consensus 334 ~---g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 334 Q---GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred C---CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 1 22344689999999998876433 69999998887653 32 22345567999999988776653 245555
Q ss_pred c
Q 010324 512 K 512 (513)
Q Consensus 512 d 512 (513)
+
T Consensus 409 ~ 409 (433)
T PRK04922 409 S 409 (433)
T ss_pred E
Confidence 4
No 238
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=4.2e-13 Score=123.20 Aligned_cols=276 Identities=17% Similarity=0.194 Sum_probs=174.8
Q ss_pred eEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC-----------C
Q 010324 217 ECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-----------D 285 (513)
Q Consensus 217 ~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----------d 285 (513)
+-+.|||.|.||+|-..-|.. +|--.+-.....+. | ..|.-+.|||+.+||+|-+. .
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~--lWGG~~f~r~~RF~---------H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIA--LWGGESFDRIQRFY---------H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeEEecCCceEEEEEecccee--eecCccHHHHHhcc---------C-CCceeeecCCccceEEEecCCccccCcccCCC
Confidence 568999999999999999865 89755544333332 4 35899999999999998653 1
Q ss_pred CcEEEEEcCCcceeeeccc--ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCE
Q 010324 286 GKIKVWRIRSGQCLRRLER--AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSR 363 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 363 (513)
..++|||+.+|...+.+.. .....-.-..||.|++++|.-.. ..|.||+..+..++..-.-.-..|....|+|.++.
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNL 360 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcce
Confidence 4799999999998888763 12222345789999999987765 67889987664443332223456788888888776
Q ss_pred EEEEeCC-----CcEEEEeCCCCceeEeec------------------------C----------------------CCC
Q 010324 364 VVTASSD-----CTVKVWDLKSTDCLQTFK------------------------P----------------------PPP 392 (513)
Q Consensus 364 l~~~~~d-----g~i~iwd~~~~~~~~~~~------------------------~----------------------~~~ 392 (513)
||.=+.. ..+.+-.+.+++.+++-. . +..
T Consensus 361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve 440 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE 440 (698)
T ss_pred EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence 6642211 112222221111111000 0 000
Q ss_pred CCCCCceeeEEEecCCCCCeEEEEcCC--CcEEEEEccC--eEEEEeecCccCCCcEEEEEECCCCCEEEEEe---cCce
Q 010324 393 LRGGDASVNSVHLFPKNPDHIVVCNKT--SSIYIMTLQG--QVVKSFSSGKREGGDFVAACVSPKGEWIYCVG---EDRN 465 (513)
Q Consensus 393 ~~~~~~~v~~~~~~~~~~~~l~~~~~~--~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~ 465 (513)
.......+...+|-|.+..+.+..+.+ .++.+|.... .....+... .....+.+.|+|.|++++.++ ..|.
T Consensus 441 ~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~--dk~~~N~vfwsPkG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 441 VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL--DKKFANTVFWSPKGRFVVVAALVSRRGD 518 (698)
T ss_pred eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh--cccccceEEEcCCCcEEEEEEecccccc
Confidence 011234677888999886655554433 5677777762 111111111 124467899999999998876 5789
Q ss_pred EEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCe
Q 010324 466 LYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCT 507 (513)
Q Consensus 466 i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 507 (513)
+.++|.....+..+-.......+.+.|.|.|+++++++.-+.
T Consensus 519 l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred eEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence 999998753333222222235678999999999999986443
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.4e-12 Score=127.36 Aligned_cols=218 Identities=16% Similarity=0.172 Sum_probs=146.1
Q ss_pred CCccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEE-eeCCC--cEEEEec
Q 010324 263 HDETVLCIEFSRDSEMLASGSQD---GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILS-TSFDS--TARIHGL 336 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~i~d~ 336 (513)
+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +. .....+...+|+|||+.|+. .+.+| .|++||+
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~-~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-IT-NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-cc-CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 67789999999999999887644 369999998886543 22 23344567899999998874 44454 6888899
Q ss_pred CCCceeeEecccccceeEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeE
Q 010324 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DC--TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 413 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 413 (513)
.+++.. .+..+........|+|||+.++..+. +| .|.++|+.+++...... . ........|+|++..++
T Consensus 275 ~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~------~~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 275 ASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-V------GNYNARPRLSADGKTLV 346 (430)
T ss_pred CCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-C------CCCccceEECCCCCEEE
Confidence 877643 45555556677899999998876654 33 57777887776433221 1 11233567899885544
Q ss_pred EEEcCCC--cEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC---ceEEEEECCCceeeEeeecccCCeE
Q 010324 414 VVCNKTS--SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED---RNLYCFSHQSGKLEHLMKVHEKDVI 488 (513)
Q Consensus 414 ~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~ 488 (513)
++...++ .|.++|+.+.....+..... .....|+|+|+.++..+.+ ..+++++.. +.....+..+.+.+.
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~~~lt~~~~----~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~ 421 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSVRILTDTSL----DESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVR 421 (430)
T ss_pred EEEccCCceEEEEEECCCCCEEEccCCCC----CCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcC
Confidence 4444444 57888888655555443221 1245899999999887743 357788875 444445555666778
Q ss_pred EEEEcCC
Q 010324 489 GVTHHPH 495 (513)
Q Consensus 489 ~~~~~p~ 495 (513)
..+|+|-
T Consensus 422 ~p~ws~~ 428 (430)
T PRK00178 422 EPSWSPY 428 (430)
T ss_pred CCccCCC
Confidence 8888873
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.59 E-value=2.8e-13 Score=115.44 Aligned_cols=158 Identities=16% Similarity=0.304 Sum_probs=115.4
Q ss_pred EEEEEEcCCCCEEEEEeC----------CCcEEEEEcC-CcceeeecccccccCeEEEEEccCCCEEEEe--eCCCcEEE
Q 010324 267 VLCIEFSRDSEMLASGSQ----------DGKIKVWRIR-SGQCLRRLERAHSEGVTSLVFSRDGSQILST--SFDSTARI 333 (513)
Q Consensus 267 v~~l~~~~~~~~l~s~~~----------dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i 333 (513)
=..+.|+|+|++|+.-.. -|...+|.++ .+.....+.....++|.+++|+|+|+.|++. ..++.|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 346789999987775433 1345555553 2334444543445679999999999987654 45679999
Q ss_pred EecCCCceeeEecccccceeEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCC
Q 010324 334 HGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS---DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP 410 (513)
Q Consensus 334 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 410 (513)
||++ ++.+..+. ...++.+.|+|+|+++++++. .|.|.+||.++.+.+.+.. ...++.+.|+|++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--------~~~~t~~~WsPdG- 155 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--------HSDATDVEWSPDG- 155 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--------cCcEEEEEEcCCC-
Confidence 9995 66666664 456889999999999999875 4679999999888776654 2346899999999
Q ss_pred CeEEEEcC------CCcEEEEEccCeEEEEee
Q 010324 411 DHIVVCNK------TSSIYIMTLQGQVVKSFS 436 (513)
Q Consensus 411 ~~l~~~~~------~~~i~i~d~~~~~~~~~~ 436 (513)
.+++++.. |..+++|+..|+.+....
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred CEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 56655543 788999999988765543
No 241
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.1e-12 Score=127.68 Aligned_cols=217 Identities=17% Similarity=0.155 Sum_probs=143.6
Q ss_pred CCccEEEEEEcCCCCEEEEEeCC-C--cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEE-eeCCCc--EEEEec
Q 010324 263 HDETVLCIEFSRDSEMLASGSQD-G--KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILS-TSFDST--ARIHGL 336 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~i~d~ 336 (513)
+...+.+..|+|||+.|+..+.+ + .|.+||+.+++..... .........+|+|||+.|+. .+.+|. |+++|+
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT--SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec--CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 56788999999999999877543 2 5889999887653322 12333457899999998875 455664 888898
Q ss_pred CCCceeeEecccccceeEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeE
Q 010324 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DC--TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 413 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 413 (513)
.+++. ..+..+........|+|||+.++..+. ++ .|.++|+.+++...... . ........|+|++..++
T Consensus 294 ~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~------g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 294 ATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-E------GEQNLGGSITPDGRSMI 365 (448)
T ss_pred CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-C------CCCCcCeeECCCCCEEE
Confidence 77654 444445556678899999998877654 33 46667887776433211 1 11223468999985555
Q ss_pred EEEcCCC--cEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC-c--eEEEEECCCceeeEeeecccCCeE
Q 010324 414 VVCNKTS--SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-R--NLYCFSHQSGKLEHLMKVHEKDVI 488 (513)
Q Consensus 414 ~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~ 488 (513)
++...++ .|.++|+.+.....+..... .....|+|+|+.|+..+.+ | .+++++. +|.....+..+.+.+.
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~~lt~~~~----d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~ 440 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQVLTSTRL----DESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVK 440 (448)
T ss_pred EEEecCCceEEEEEECCCCCeEEccCCCC----CCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcC
Confidence 5554455 45567776555444433211 1234799999998876643 3 4778886 5666666766677788
Q ss_pred EEEEcC
Q 010324 489 GVTHHP 494 (513)
Q Consensus 489 ~~~~~p 494 (513)
..+|+|
T Consensus 441 ~p~Wsp 446 (448)
T PRK04792 441 SPAWSP 446 (448)
T ss_pred CCccCC
Confidence 889987
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3.8e-13 Score=130.46 Aligned_cols=206 Identities=14% Similarity=0.236 Sum_probs=136.7
Q ss_pred CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC---CcEEEEecCCCceeeEecccccceeEEEEccCCC
Q 010324 286 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD---STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 362 (513)
..|.++|.. |.....+. .+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+..|+|||+
T Consensus 176 ~~L~~~D~d-G~~~~~l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSAL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 357777763 44444444 566789999999999999887643 359999998886543 333445567899999999
Q ss_pred EEE-EEeCCCcEEEEe--CCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEc--cCeEEEEeec
Q 010324 363 RVV-TASSDCTVKVWD--LKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL--QGQVVKSFSS 437 (513)
Q Consensus 363 ~l~-~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~--~~~~~~~~~~ 437 (513)
.++ +.+.+|...+|. +.++. ...+. .+........|+|++..+++++..++...+|.+ .+.....+..
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~ 325 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLT------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF 325 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECC------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec
Confidence 887 456777766665 44443 22222 223344567899998555556555566566654 4444433332
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecCc---eEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCC
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGEDR---NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDC 506 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 506 (513)
. .......+|+|+|++|+..+.++ .|++||+.+++....... .......|+||++.|+.++.++
T Consensus 326 ~---g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 326 T---GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred C---CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecC
Confidence 1 12234678999999998877554 699999988875543322 3346789999999888777544
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.57 E-value=2e-12 Score=126.36 Aligned_cols=214 Identities=19% Similarity=0.211 Sum_probs=142.6
Q ss_pred CCccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEe-eCCC--cEEEEec
Q 010324 263 HDETVLCIEFSRDSEMLASGSQD---GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDS--TARIHGL 336 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~i~d~ 336 (513)
+...+.+.+|+|||++|+.++.+ ..|++||+.+++..... .+...+.+++|+|||+.|+.. +.++ .|++||+
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA--SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee--cCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence 66678999999999999988654 47999999988654332 344566779999999987654 4444 5899998
Q ss_pred CCCceeeEecccccceeEEEEccCCCEEEEEeCC-C--cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeE
Q 010324 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD-C--TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 413 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 413 (513)
.++.. ..+..+........|+|+|+.|+.++.. + .|.++|+.+++... +. .+........|+|++ ..+
T Consensus 266 ~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~------~~~~~~~~~~~spdg-~~i 336 (417)
T TIGR02800 266 DGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT------FRGGYNASPSWSPDG-DLI 336 (417)
T ss_pred CCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee------cCCCCccCeEECCCC-CEE
Confidence 77654 3344444555678999999988776643 3 58888887765432 22 122345677899988 556
Q ss_pred EEEcCCC---cEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc---eEEEEECCCceeeEeeecccCCe
Q 010324 414 VVCNKTS---SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR---NLYCFSHQSGKLEHLMKVHEKDV 487 (513)
Q Consensus 414 ~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v 487 (513)
+.++.++ .|.++|+.+.....+.... ......|+|+|++|+..+.++ .+++.+. ++.....+..+.+.+
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~ 411 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGERVLTDTG----LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDV 411 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCeEEccCCC----CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCc
Confidence 5555554 7888888765444443221 123568999999998887654 4566664 344445554445555
Q ss_pred EEEEE
Q 010324 488 IGVTH 492 (513)
Q Consensus 488 ~~~~~ 492 (513)
..++|
T Consensus 412 ~~~~w 416 (417)
T TIGR02800 412 REPAW 416 (417)
T ss_pred CCCCC
Confidence 55555
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.54 E-value=2e-12 Score=120.00 Aligned_cols=193 Identities=18% Similarity=0.306 Sum_probs=157.8
Q ss_pred CCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEc--------------------CCCCEEEE
Q 010324 222 SPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS--------------------RDSEMLAS 281 (513)
Q Consensus 222 s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--------------------~~~~~l~s 281 (513)
.|.+.++|....||.++ +|+...++....+... .. -.+...+..|. .+...++-
T Consensus 2 ~~~~~~~A~~~~~g~l~-iw~t~~~~~~~e~~p~--~~---~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLR-IWDTAKNQLQQEFAPI--AS---LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred CchhheEeecCCCCeEE-EEEccCceeeeeeccc--hh---ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence 45678999999999998 9999988876554321 11 23444455552 23457788
Q ss_pred EeCCCcEEEEEcCCcceeeecc-cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccC
Q 010324 282 GSQDGKIKVWRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND 360 (513)
Q Consensus 282 ~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 360 (513)
|...|.|.+|++..|+...++. ..|.+.|.++.++.+-..|.+++.|+.+..|+..++..+..++.....+.+++.+||
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence 8889999999999999888776 578999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC-----CCCeEEEEcCCCcEEEEEcc
Q 010324 361 GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK-----NPDHIVVCNKTSSIYIMTLQ 428 (513)
Q Consensus 361 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~~~~i~i~d~~ 428 (513)
|..+++++ +.|++||+++++.+.+|. +|.++|.++.|... +..++.+...+..+.+|-..
T Consensus 156 ~~~l~~as--~~ik~~~~~~kevv~~ft------gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIETKEVVITFT------GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred CCEEEecc--ceEEEEEccCceEEEEec------CCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 99999887 579999999999999987 88899999998765 43445555556667777765
No 245
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.53 E-value=4.9e-11 Score=109.29 Aligned_cols=262 Identities=11% Similarity=0.094 Sum_probs=163.7
Q ss_pred CeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCcceeeeccc
Q 010324 235 GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ----------DGKIKVWRIRSGQCLRRLER 304 (513)
Q Consensus 235 g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~ 304 (513)
+.|. +.|..+++.+..+.. ...-..+ ++|||+.|+++.. +..|.+||..+.+.+..+..
T Consensus 27 ~~v~-ViD~~~~~v~g~i~~---------G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~ 95 (352)
T TIGR02658 27 TQVY-TIDGEAGRVLGMTDG---------GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL 95 (352)
T ss_pred ceEE-EEECCCCEEEEEEEc---------cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc
Confidence 7885 999998887766553 1122234 9999998888765 67999999999999988863
Q ss_pred cc------ccCeEEEEEccCCCEEEEee-C-CCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEE
Q 010324 305 AH------SEGVTSLVFSRDGSQILSTS-F-DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 376 (513)
Q Consensus 305 ~~------~~~v~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 376 (513)
+. ......++++|||+++++.. . +..|.+.|+.+++.+.++.-.. ...-...+++ .++ +-+.||.....
T Consensus 96 p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~-~~~-~~~~Dg~~~~v 172 (352)
T TIGR02658 96 PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAND-TFF-MHCRDGSLAKV 172 (352)
T ss_pred CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCC-ccE-EEeecCceEEE
Confidence 21 12334789999999999776 3 6899999999999998887422 1111222222 222 22345554443
Q ss_pred eCCCCceeEeecCCCCCCCCCceee-EEEecCCCCCeEEEEcCCCcEEEEEccCeEE------EEeecCc----cCCCcE
Q 010324 377 DLKSTDCLQTFKPPPPLRGGDASVN-SVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV------KSFSSGK----REGGDF 445 (513)
Q Consensus 377 d~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~------~~~~~~~----~~~~~~ 445 (513)
.+.+......-..+ .......++. .-.+.+.++..+++... |.|++.|+.+... ..+.... -..+.+
T Consensus 173 ~~d~~g~~~~~~~~-vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 173 GYGTKGNPKIKPTE-VFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred EecCCCceEEeeee-eecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 33322111111000 0000000000 00335533366666665 9999999753221 1111111 112233
Q ss_pred EEEEECCCCCEEEEEe----------cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCC-EEEEEE-CCCeEEeccC
Q 010324 446 VAACVSPKGEWIYCVG----------EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN-LLATYG-EDCTMKLWKP 513 (513)
Q Consensus 446 ~~~~~s~~~~~l~~g~----------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~-~dg~i~iWdp 513 (513)
..++++++++.+++.. ..+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.+.|+
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 4499999999998853 225899999999999988875 35789999999998 777665 6788988874
No 246
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1.8e-10 Score=101.42 Aligned_cols=276 Identities=17% Similarity=0.261 Sum_probs=183.4
Q ss_pred ccccCceeEEEECCCCCEEEEEecC---CeEEEEEeccc--cccccccccccccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFD---GFIEVVWDYLS--GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~d---g~i~~iwd~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
..+.+.++-++|+|+++.|.++..+ |.|. -|.++. |++...-. ... ...+...++++++|++++++..
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggva-ay~iD~~~G~Lt~ln~----~~~--~g~~p~yvsvd~~g~~vf~AnY 108 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVA-AYRIDPDDGRLTFLNR----QTL--PGSPPCYVSVDEDGRFVFVANY 108 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEE-EEEEcCCCCeEEEeec----ccc--CCCCCeEEEECCCCCEEEEEEc
Confidence 4667788899999999999988655 5563 555553 55432111 111 2234488999999999999875
Q ss_pred -CCcEEEEEcCC-cceeeecc-cccccC----------eEEEEEccCCCEEEEeeCC-CcEEEEecCCCceeeEec---c
Q 010324 285 -DGKIKVWRIRS-GQCLRRLE-RAHSEG----------VTSLVFSRDGSQILSTSFD-STARIHGLKSGKLLKEFR---G 347 (513)
Q Consensus 285 -dg~i~vwd~~~-~~~~~~~~-~~~~~~----------v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~---~ 347 (513)
.|.|.++-+.. |....... ..|... +....+.|++++|++.+-. -.|.+|++..|+....-. .
T Consensus 109 ~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~ 188 (346)
T COG2706 109 HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK 188 (346)
T ss_pred cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC
Confidence 57999999865 43221110 023333 8889999999999987642 468999998776533221 2
Q ss_pred cccceeEEEEccCCCEEEEEeC-CCcEEEEeCCCC-c---eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc-CCCc
Q 010324 348 HSSYVNDAIFTNDGSRVVTASS-DCTVKVWDLKST-D---CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN-KTSS 421 (513)
Q Consensus 348 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~~~~ 421 (513)
.....+.|.|+|++++..+.++ +++|.+|..... . .++.+.....-.........+..++++ .++.++. ....
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~ds 267 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDS 267 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCe
Confidence 4556889999999998777664 899999998773 2 222222222223445677889999998 5555554 4567
Q ss_pred EEEEEcc--CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc-eEEEEEC--CCceeeEeee-cccCCeEEEEEc
Q 010324 422 IYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR-NLYCFSH--QSGKLEHLMK-VHEKDVIGVTHH 493 (513)
Q Consensus 422 i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd~--~~~~~~~~~~-~h~~~v~~~~~~ 493 (513)
|.++.+. +..+........++.......++++|++|+++.+++ .|.+|.+ .+|++-.... .......|+.|.
T Consensus 268 I~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 268 IAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 8888876 455555555554555577899999999999999654 5777755 5666544333 234456677664
No 247
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.51 E-value=2.2e-11 Score=111.13 Aligned_cols=275 Identities=16% Similarity=0.194 Sum_probs=184.9
Q ss_pred ccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCC-----
Q 010324 212 TKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG----- 286 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg----- 286 (513)
-.-++..++|||.|++|++....|.. +|..........+ -...|..+.|+|.+++|.+-+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~--~~~g~~~~~l~~~----------~~~~V~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVE--CWGGPSKAKLVRF----------RHPDVKYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred cCcchhheeecCcchheehhhccceE--Eccccchhheeee----------ecCCceecccCcccceeeeeccCCccChh
Confidence 45578889999999999999988754 8887665533322 235699999999999999865443
Q ss_pred ----------cEEEEEcCCcceeeecccc--------------------------------------------cccCeEE
Q 010324 287 ----------KIKVWRIRSGQCLRRLERA--------------------------------------------HSEGVTS 312 (513)
Q Consensus 287 ----------~i~vwd~~~~~~~~~~~~~--------------------------------------------~~~~v~~ 312 (513)
.+.+||+.+|..+..+... ....|..
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~d 178 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILD 178 (561)
T ss_pred hccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceee
Confidence 4999999988766544300 0134555
Q ss_pred EEEccCC--CEEEE-----eeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEe-----------CCCcEE
Q 010324 313 LVFSRDG--SQILS-----TSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS-----------SDCTVK 374 (513)
Q Consensus 313 ~~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~dg~i~ 374 (513)
..|+|.+ ..|+. .+..+.+++|.+..+..+.+-.-....=..+.|.+.|+++++-. ....++
T Consensus 179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence 6666642 23332 34456777777765555544332233334678888888766422 134577
Q ss_pred EEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE-cCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCC
Q 010324 375 VWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC-NKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPK 453 (513)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~ 453 (513)
+++++...+.... ...++|...+|.|.+..+.++. .....+.++|++++....+... .-..+.|+|.
T Consensus 259 l~~~~e~~i~V~~-------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~-----~rNT~~fsp~ 326 (561)
T COG5354 259 LLRITERSIPVEK-------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQ-----KRNTIFFSPH 326 (561)
T ss_pred EEeecccccceec-------cccccceeeeecccCCceeEEecccccceeecccccceEEecCCc-----ccccccccCc
Confidence 7777632221111 3467999999999986654444 6788999999998855444432 2457889999
Q ss_pred CCEEEEEec---CceEEEEECCCceeeE-eeecccCCeEEEEEcCCCCEEEEEE------CCCeEEecc
Q 010324 454 GEWIYCVGE---DRNLYCFSHQSGKLEH-LMKVHEKDVIGVTHHPHRNLLATYG------EDCTMKLWK 512 (513)
Q Consensus 454 ~~~l~~g~~---dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~~------~dg~i~iWd 512 (513)
+++++.++- .|.+-+||........ .+.+. ..+-+.|+|+++++.+.. .|..|+|||
T Consensus 327 ~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 327 ERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred ccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence 999999775 4679999987654443 44432 345678999999887764 477899997
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.3e-11 Score=116.36 Aligned_cols=222 Identities=11% Similarity=0.062 Sum_probs=139.4
Q ss_pred CCccEEEEEEcCCCCEEE---EEeCCC--cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeC-CC----cEE
Q 010324 263 HDETVLCIEFSRDSEMLA---SGSQDG--KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF-DS----TAR 332 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~---s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~ 332 (513)
....+.+-+|+|||+.++ +...+| .|.+.++.+|+..... .........+|+|||+.|+..+. +| .+.
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence 455667889999997532 343343 5777888877643332 23444567899999999887653 22 344
Q ss_pred EEecCCC---ceeeEecccccceeEEEEccCCCEEEEEe-CCCcEEEE--eCCC-CceeEeecCCCCCCCCCceeeEEEe
Q 010324 333 IHGLKSG---KLLKEFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVW--DLKS-TDCLQTFKPPPPLRGGDASVNSVHL 405 (513)
Q Consensus 333 i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~-~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
.|++..+ +...............+|+|||+.|+..+ .+|...+| ++.. +.....+. .....+....|
T Consensus 261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt------~~~~~~~~p~w 334 (428)
T PRK01029 261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT------KKYRNSSCPAW 334 (428)
T ss_pred EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec------cCCCCccceeE
Confidence 4776643 32222222233456789999999888766 46655555 4432 22222222 22335567889
Q ss_pred cCCCCCeEEEEcCC--CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEec---CceEEEEECCCceeeEee
Q 010324 406 FPKNPDHIVVCNKT--SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGE---DRNLYCFSHQSGKLEHLM 480 (513)
Q Consensus 406 ~~~~~~~l~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~ 480 (513)
+|++..++++...+ ..|++||+.+.....+.... ..+....|+|||+.|+..+. .+.|+++|+.+++.....
T Consensus 335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 335 SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP---ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 99985455554443 46899999866665554321 23567899999998876543 457999999887765444
Q ss_pred ecccCCeEEEEEcCCC
Q 010324 481 KVHEKDVIGVTHHPHR 496 (513)
Q Consensus 481 ~~h~~~v~~~~~~p~~ 496 (513)
. ..+.+...+|+|-.
T Consensus 412 ~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 412 I-GSGEKRFPSWGAFP 426 (428)
T ss_pred c-CCCcccCceecCCC
Confidence 3 45567788998853
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.49 E-value=2e-12 Score=111.99 Aligned_cols=246 Identities=15% Similarity=0.211 Sum_probs=188.4
Q ss_pred ccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEE-cCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEe
Q 010324 257 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR-IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHG 335 (513)
Q Consensus 257 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 335 (513)
...+.||.+.|++...-|...-+++.+.|.+++||- .+.++.-..+......+++++.+.++...|++|-..|++.-+.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 345678999999999999888899999999999995 4456666666656678999999999999999999999998886
Q ss_pred cC----CCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCC
Q 010324 336 LK----SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 411 (513)
Q Consensus 336 ~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (513)
+. .....+....|..++..+.|+....++++.+.|..+.---.+.+..+..+.......... + +-.
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~-------~---d~~ 166 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ-------F---DAL 166 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCc-------e---eeE
Confidence 53 334455666799999999999988999999999877655555544332221111000000 0 001
Q ss_pred eEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce-eeEeeecccCCeEEE
Q 010324 412 HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK-LEHLMKVHEKDVIGV 490 (513)
Q Consensus 412 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~ 490 (513)
+..+|...|.+....+....+..+.....+.+.+++++|.+....+++|..|..+.+||+.-.+ ....+.+|.+.|..+
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL 246 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence 4556667777777777655555555556677889999999999999999999999999997554 345677899999999
Q ss_pred EEcCCCCEEEEEECCCeEEecc
Q 010324 491 THHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 491 ~~~p~~~~l~s~~~dg~i~iWd 512 (513)
..-+.-..+.+++.||.|.+|+
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEe
Confidence 9988889999999999999997
No 250
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=2.2e-12 Score=111.66 Aligned_cols=248 Identities=15% Similarity=0.247 Sum_probs=173.8
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcce----eeeccccc------------ccCeEEEEEccCC--CEEEE
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC----LRRLERAH------------SEGVTSLVFSRDG--SQILS 324 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~------------~~~v~~~~~~~~~--~~l~~ 324 (513)
...-|.++.|...|.+||+|+.+|.|.++.-..... ..+....| ...|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 356789999999999999999999999996432211 11111122 3468889999865 46778
Q ss_pred eeCCCcEEEEecCCCceee-----------------------------------Ee-cccccceeEEEEccCCCEEEEEe
Q 010324 325 TSFDSTARIHGLKSGKLLK-----------------------------------EF-RGHSSYVNDAIFTNDGSRVVTAS 368 (513)
Q Consensus 325 ~~~dg~i~i~d~~~~~~~~-----------------------------------~~-~~~~~~v~~~~~~~~~~~l~~~~ 368 (513)
.+.|.+|++|.+....... .+ .+|...|+++.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 8889999999875322110 01 25778899999999998888764
Q ss_pred CCCcEEEEeCCCCceeEeecCCCC--CCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-----EEEEeecCcc-
Q 010324 369 SDCTVKVWDLKSTDCLQTFKPPPP--LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-----VVKSFSSGKR- 440 (513)
Q Consensus 369 ~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-----~~~~~~~~~~- 440 (513)
|=.|.+|++.-...-..+....+ ......-|++..|+|...+.++.++..|+|++.|++.. ..+.+.....
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 66799999874432222211111 11123457888999999899999999999999999832 2222221110
Q ss_pred --------CCCcEEEEEECCCCCEEEEEecCceEEEEEC-CCceeeEeeecccC------------C---eEEEEEcCCC
Q 010324 441 --------EGGDFVAACVSPKGEWIYCVGEDRNLYCFSH-QSGKLEHLMKVHEK------------D---VIGVTHHPHR 496 (513)
Q Consensus 441 --------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~-~~~~~~~~~~~h~~------------~---v~~~~~~p~~ 496 (513)
--..|..+.|+++|+|+++-+ =-+|.+||+ ...+++.+++.|.. . -..++|+.++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 113567899999999998765 368999999 45677777776632 2 2357899899
Q ss_pred CEEEEEECCCeEEecc
Q 010324 497 NLLATYGEDCTMKLWK 512 (513)
Q Consensus 497 ~~l~s~~~dg~i~iWd 512 (513)
..++|||....+++++
T Consensus 342 ~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFN 357 (433)
T ss_pred ceEecccccceEEEec
Confidence 9999999999999986
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.49 E-value=5.2e-12 Score=109.46 Aligned_cols=295 Identities=19% Similarity=0.293 Sum_probs=194.1
Q ss_pred cceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEE-eccccccccccccccccccccCCccEEEEEEcCCCCEEEE
Q 010324 203 TLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVW-DYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 281 (513)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iw-d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 281 (513)
.+.+.++ ||.+.|+....-|...-+++.+.|.++| +| +.+.++.-..+.. ....+++++++.++...|+.
T Consensus 15 ~ll~~~e-G~~d~vn~~~l~~~e~gv~~~s~drtvr-v~lkrds~q~wpsI~~-------~mP~~~~~~~y~~e~~~L~v 85 (404)
T KOG1409|consen 15 ELLSKIE-GSQDDVNAAILIPKEEGVISVSEDRTVR-VWLKRDSGQYWPSIYH-------YMPSPCSAMEYVSESRRLYV 85 (404)
T ss_pred hhhhhhc-CchhhhhhheeccCCCCeEEccccceee-eEEeccccccCchhhh-------hCCCCceEeeeeccceEEEE
Confidence 3445565 9999999999999888999999999999 66 4455554433321 14678999999999999999
Q ss_pred EeCCCcEEEEEcCC----cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEE-----------------------
Q 010324 282 GSQDGKIKVWRIRS----GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIH----------------------- 334 (513)
Q Consensus 282 ~~~dg~i~vwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~----------------------- 334 (513)
|-..|++.-+.+.. -...+... .|...+..+-|+.....+++.+.|..+.-.
T Consensus 86 g~~ngtvtefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d 164 (404)
T KOG1409|consen 86 GQDNGTVTEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFD 164 (404)
T ss_pred EEecceEEEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCcee
Confidence 99999998886642 22333333 677777777777666666666655433211
Q ss_pred ----------------e--cCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCC
Q 010324 335 ----------------G--LKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGG 396 (513)
Q Consensus 335 ----------------d--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 396 (513)
. ...-..+.++.+|.+.+.+++|.|....+++|..|..+.+||+--.+-+.. ...+|
T Consensus 165 ~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~-----el~gh 239 (404)
T KOG1409|consen 165 ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY-----ELQGH 239 (404)
T ss_pred eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee-----eeccc
Confidence 1 112235667788999999999999999999999999999999875443221 12356
Q ss_pred CceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEee--cCc-----------------------------cCCCcE
Q 010324 397 DASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFS--SGK-----------------------------REGGDF 445 (513)
Q Consensus 397 ~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~--~~~-----------------------------~~~~~~ 445 (513)
...|..+...+.- ..+++++.||.|.+|+++........ ... ..-+..
T Consensus 240 ~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~a 318 (404)
T KOG1409|consen 240 NDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKA 318 (404)
T ss_pred hhhhhhhhhhhhh-eeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhh
Confidence 6777777666655 78999999999999999844322111 000 000111
Q ss_pred EEEEECCCCCEEEEEecCceEEEEECCC-------ceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 446 VAACVSPKGEWIYCVGEDRNLYCFSHQS-------GKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 446 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+...+.+.....+-+..-.+++-|.-. ..++.....-...|+++.+..+..+|+|+|.|..|+|||.
T Consensus 319 vc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~ 393 (404)
T KOG1409|consen 319 VCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDV 393 (404)
T ss_pred cCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEec
Confidence 1111222222222222233455544321 1223333222346889988888889999999999999984
No 252
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.49 E-value=1.3e-11 Score=104.77 Aligned_cols=264 Identities=17% Similarity=0.186 Sum_probs=178.9
Q ss_pred CCeEEEEEeccccccccccccccccccccCCccEEEEEEcC---CCC-EEEEEeCCCcEEEEEcCCcceeeecccc----
Q 010324 234 DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR---DSE-MLASGSQDGKIKVWRIRSGQCLRRLERA---- 305 (513)
Q Consensus 234 dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~---- 305 (513)
.|.+ ++|++...+....-..+. .....+..|.|.. +|. .++-+..+|.|.++..........+..-
T Consensus 45 ~Gkl-~Lys~~d~~~~~l~~~q~-----~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k 118 (339)
T KOG0280|consen 45 SGKL-HLYSLEDMKLSPLDTLQC-----TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK 118 (339)
T ss_pred ccce-EEEeecccccCccceeee-----ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh
Confidence 4677 488887766554111111 1346678888875 555 5666777899999986544333333210
Q ss_pred -cccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceee--EecccccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCC-
Q 010324 306 -HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK--EFRGHSSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKS- 380 (513)
Q Consensus 306 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~- 380 (513)
......++.|++.+..++++..+|.+.+-+........ .++.|.-.+....|+. +.+.+.+|+.|+.+..||+|.
T Consensus 119 i~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 119 ISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred hhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 11124578899999999999999999976665554443 7888999999899876 446889999999999999993
Q ss_pred CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeEEEEeecCccCCCcEEEEEECCCCC-EE
Q 010324 381 TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGE-WI 457 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l 457 (513)
++.+.. ....|...|.++.-+|..+..+++|+.|..|++||.+ ++++.... ..+.|..++.+|.-. .+
T Consensus 199 ~~~i~~-----n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~----v~GGVWRi~~~p~~~~~l 269 (339)
T KOG0280|consen 199 KTFIWH-----NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK----VGGGVWRIKHHPEIFHRL 269 (339)
T ss_pred cceeee-----cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc----cccceEEEEecchhhhHH
Confidence 322222 1125778899999999999999999999999999998 44443322 246799999988643 22
Q ss_pred EEEecCceEEEEECCCc--e---eeEeeecccCCeEEEEEcCCCCEEEEEE-CCCeEE-ecc
Q 010324 458 YCVGEDRNLYCFSHQSG--K---LEHLMKVHEKDVIGVTHHPHRNLLATYG-EDCTMK-LWK 512 (513)
Q Consensus 458 ~~g~~dg~i~iwd~~~~--~---~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~-iWd 512 (513)
.+++.-+-.+|.+...+ + .....+.|.+-+..-.|.....+||||+ .|+.++ +|-
T Consensus 270 L~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 270 LAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred HHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 22333333445554433 2 3345566777788888866667899987 677755 774
No 253
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=2.5e-14 Score=137.89 Aligned_cols=299 Identities=20% Similarity=0.242 Sum_probs=198.4
Q ss_pred hHHHHHHHHHHhhhhhcCCCCCC--CceeeccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCC
Q 010324 158 SRLMALIGQALKWQQHQGLLPPG--TQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDG 235 (513)
Q Consensus 158 ~rl~~l~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg 235 (513)
-.|.+++-+.++.|+.+|..|.. ++|++|..+.++.+......|..+.-++. .. -.+++-+. +-.+..|.
T Consensus 1013 ~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~--~r-----el~~~y~g-V~g~~~dr 1084 (1516)
T KOG1832|consen 1013 LSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLG--TR-----ELQSFYSG-VHGNRRDR 1084 (1516)
T ss_pred CcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhccc--ch-----hhcCcccc-cccCcccc
Confidence 44889999999999999998854 68999988877766555445544433321 10 11222111 11122232
Q ss_pred eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEE
Q 010324 236 FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF 315 (513)
Q Consensus 236 ~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 315 (513)
.. |+. .+..-..+..|....+|++|+-+.++|+.|+..|.|+++++.+|....... +|.++|+.+.-
T Consensus 1085 ~~--IFS----------RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~veP 1151 (1516)
T KOG1832|consen 1085 QF--IFS----------RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEP 1151 (1516)
T ss_pred hh--hHh----------hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-ccccccccccc
Confidence 22 221 122334566688999999999999999999999999999999999988886 99999999999
Q ss_pred ccCCCEEEEeeCCC--cEEEEecCC-CceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCC
Q 010324 316 SRDGSQILSTSFDS--TARIHGLKS-GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPP 392 (513)
Q Consensus 316 ~~~~~~l~~~~~dg--~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 392 (513)
+.+|..+++.+.-. -..+|++.+ +...+++. .-.++.|+.....-+.|+......+||+.++....++-...
T Consensus 1152 s~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~- 1226 (1516)
T KOG1832|consen 1152 SVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT- 1226 (1516)
T ss_pred cCCcceeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc-
Confidence 99999887765433 467899854 33444444 24567888765555566666679999999998877743322
Q ss_pred CCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEEC
Q 010324 393 LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 393 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 471 (513)
.+....-+...|+|.+ .+++- || .+||.+. ..+..+..... ...-.|+|+|.-++.-++ |||+
T Consensus 1227 -~~~~y~~n~a~FsP~D-~LIln---dG--vLWDvR~~~aIh~FD~ft~----~~~G~FHP~g~eVIINSE-----IwD~ 1290 (1516)
T KOG1832|consen 1227 -VTSSYSNNLAHFSPCD-TLILN---DG--VLWDVRIPEAIHRFDQFTD----YGGGGFHPSGNEVIINSE-----IWDM 1290 (1516)
T ss_pred -hhhhhhccccccCCCc-ceEee---Cc--eeeeeccHHHHhhhhhhee----cccccccCCCceEEeech-----hhhh
Confidence 1233344777888876 44442 22 5788873 33333332221 224468999999988774 9999
Q ss_pred CCceeeEeeecccCCeEEEEEcCCCCEEE
Q 010324 472 QSGKLEHLMKVHEKDVIGVTHHPHRNLLA 500 (513)
Q Consensus 472 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 500 (513)
++.++++..+.-. -..+.|+..|+.+.
T Consensus 1291 RTF~lLh~VP~Ld--qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1291 RTFKLLHSVPSLD--QCAVTFNSTGDVMY 1317 (1516)
T ss_pred HHHHHHhcCcccc--ceEEEeccCccchh
Confidence 9988877665332 23566776666543
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=3.1e-11 Score=117.89 Aligned_cols=206 Identities=18% Similarity=0.253 Sum_probs=138.5
Q ss_pred CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC---CcEEEEecCCCceeeEecccccceeEEEEccCCC
Q 010324 286 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD---STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 362 (513)
..|.++|...+. .+.+. .+...+.+.+|+|||++|+.++.+ ..|++||+.+++... +..+...+.+++|+|||+
T Consensus 170 ~~l~~~d~~g~~-~~~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 368888875443 44444 456678899999999999987654 479999998876543 333455667789999999
Q ss_pred EEEEE-eCCC--cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC--cEEEEEccCeEEEEeec
Q 010324 363 RVVTA-SSDC--TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVVKSFSS 437 (513)
Q Consensus 363 ~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~~ 437 (513)
.|+.. +.++ .|++||+.++..... . .+........|+|++..++++....+ .|+++++.+.....+..
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l-~------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~ 319 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRL-T------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF 319 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEEC-C------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 77654 4444 588899887654322 2 12223345688998744555554444 57778877554444432
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecCc---eEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCC
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGEDR---NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDC 506 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 506 (513)
. ........|+|+|++++.++.++ .|++||+.++.... +..+ .......|+|+++.|+.++.++
T Consensus 320 ~---~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 320 R---GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred C---CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 2 23456788999999999988766 89999998865432 2222 2345568999999888777554
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=7.4e-10 Score=97.59 Aligned_cols=268 Identities=15% Similarity=0.213 Sum_probs=178.6
Q ss_pred CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC---CCcEEEEEcCC--ccee--eeccccc
Q 010324 234 DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ---DGKIKVWRIRS--GQCL--RRLERAH 306 (513)
Q Consensus 234 dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---dg~i~vwd~~~--~~~~--~~~~~~~ 306 (513)
+.-|. +|++++..-..... ....+.+.++-|+|+|++++|.++.. +|.|..|.+.. |+.. .... ..
T Consensus 15 s~gI~-v~~ld~~~g~l~~~-----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-~~ 87 (346)
T COG2706 15 SQGIY-VFNLDTKTGELSLL-----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-LP 87 (346)
T ss_pred CCceE-EEEEeCcccccchh-----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-cC
Confidence 34574 89887433221111 12236788999999999999998865 46788777764 4432 2221 23
Q ss_pred ccCeEEEEEccCCCEEEEeeC-CCcEEEEecCC-Cceee--Eecccccc----------eeEEEEccCCCEEEEEeC-CC
Q 010324 307 SEGVTSLVFSRDGSQILSTSF-DSTARIHGLKS-GKLLK--EFRGHSSY----------VNDAIFTNDGSRVVTASS-DC 371 (513)
Q Consensus 307 ~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg 371 (513)
..+.+.++++++|++++++.. .|.|.++-+++ |.... ....|.+. +....+.|+++++++.+- -.
T Consensus 88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence 344588999999999998876 47899998865 43221 11223333 788899999999988763 34
Q ss_pred cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC--eEEEEeecC------ccCCC
Q 010324 372 TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--QVVKSFSSG------KREGG 443 (513)
Q Consensus 372 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~--~~~~~~~~~------~~~~~ 443 (513)
.|.+|++..+.....-.... ........+.|+|+++-..+++--+++|.+|..+. ..+..+... -....
T Consensus 168 ri~~y~~~dg~L~~~~~~~v---~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEV---KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred eEEEEEcccCcccccccccc---CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 59999999765433222111 33456788999999977777788899999999984 344333322 12234
Q ss_pred cEEEEEECCCCCEEEEEe-cCceEEEEECCC--cee--eEeeecccCCeEEEEEcCCCCEEEEEECCC-eEEec
Q 010324 444 DFVAACVSPKGEWIYCVG-EDRNLYCFSHQS--GKL--EHLMKVHEKDVIGVTHHPHRNLLATYGEDC-TMKLW 511 (513)
Q Consensus 444 ~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~--~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg-~i~iW 511 (513)
....+.+++||++|+++. ....|.+|.+.. +++ +.....+......+.++|++++|++++.|+ .|.++
T Consensus 245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 456788899999999987 345788887653 332 233334455578999999999999888543 46655
No 256
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=5.9e-12 Score=111.00 Aligned_cols=203 Identities=14% Similarity=0.260 Sum_probs=154.0
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCC-EEEEEeCC--CcEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQD--GKIK 289 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d--g~i~ 289 (513)
...|..++.. ...|.+|-.+|.+. +|....+...... ...+. ....+..+.-++... .+++|+.. ..+.
T Consensus 105 ~~~I~gl~~~--dg~Litc~~sG~l~-~~~~k~~d~hss~----l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 105 TKSIKGLKLA--DGTLITCVSSGNLQ-VRHDKSGDLHSSK----LIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELK 176 (412)
T ss_pred cccccchhhc--CCEEEEEecCCcEE-EEeccCCcccccc----ceeee-cCCceeeeccCCCCCceEecCchhccccee
Confidence 3444444443 34788889999996 9998855432110 00111 235566666666444 55668888 8899
Q ss_pred EEEcCCcceeeeccccc--------ccCeEEEEEccC--CCEEEEeeCCCcEEEEecCCC-ceeeEecccccceeEEEEc
Q 010324 290 VWRIRSGQCLRRLERAH--------SEGVTSLVFSRD--GSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFT 358 (513)
Q Consensus 290 vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~ 358 (513)
+||++..+.+.+-.... .-.++++.|.+. ...|++++.-+.+++||.+.+ +++..+.-...+++++...
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT 256 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec
Confidence 99999886665544222 224678889887 789999999999999999865 5778888888899999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC
Q 010324 359 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG 429 (513)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 429 (513)
|+|+++++|..-|.+..||++.+...... +.+..+.+.++..+|.. .++++++-|..++|+|+..
T Consensus 257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~-----~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCG-----LKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CCCcEEEEecccchhheecccCceeeccc-----cCCccCCcceEEEcCCC-ceEEeeccceeEEEeeccc
Confidence 99999999999999999999998866552 23667899999999987 8999999999999999985
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.4e-11 Score=119.84 Aligned_cols=218 Identities=21% Similarity=0.218 Sum_probs=138.4
Q ss_pred cccCceeEEEECCCCCEEEEEecC-C--eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEE-EeCCC
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFD-G--FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS-GSQDG 286 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~d-g--~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~~~dg 286 (513)
.+...+.+..|||||+.|+..+.+ + .| ++||+.+++..... . ........+|+|||+.|+. .+.+|
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L-~~~dl~tg~~~~lt------~---~~g~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEI-FVQDIYTQVREKVT------S---FPGINGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEE-EEEECCCCCeEEec------C---CCCCcCCeeECCCCCEEEEEEeCCC
Confidence 456678899999999999887543 2 47 48888776542211 1 1223346899999998875 45566
Q ss_pred c--EEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeC-CC--cEEEEecCCCceeeEecccccceeEEEEccCC
Q 010324 287 K--IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF-DS--TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG 361 (513)
Q Consensus 287 ~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 361 (513)
. |.++|+.+++.. .+. .+.......+|+|||+.++..+. ++ .|+++|+.+++... +..........+|+|||
T Consensus 285 ~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG 361 (448)
T PRK04792 285 QPEIYVVDIATKALT-RIT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDG 361 (448)
T ss_pred CeEEEEEECCCCCeE-ECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCC
Confidence 4 788888877643 343 34455678899999998877654 33 57777887776433 22222234457899999
Q ss_pred CEEEEEeCC-C--cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc--EEEEEccCeEEEEee
Q 010324 362 SRVVTASSD-C--TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS--IYIMTLQGQVVKSFS 436 (513)
Q Consensus 362 ~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~--i~i~d~~~~~~~~~~ 436 (513)
++++..+.+ + .|.++|+.++.... +.... ......|+|++..++++...++. +++++.++.....+.
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 988876653 3 45667888776432 22110 11234799998666666655554 677787777665554
Q ss_pred cCccCCCcEEEEEECC
Q 010324 437 SGKREGGDFVAACVSP 452 (513)
Q Consensus 437 ~~~~~~~~~~~~~~s~ 452 (513)
.. .+.+...+|+|
T Consensus 434 ~~---~g~~~~p~Wsp 446 (448)
T PRK04792 434 AG---QGEVKSPAWSP 446 (448)
T ss_pred CC---CCCcCCCccCC
Confidence 32 23345566766
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.46 E-value=1.4e-11 Score=104.58 Aligned_cols=251 Identities=14% Similarity=0.112 Sum_probs=165.2
Q ss_pred cCceeEEEECC---CCC-EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcE
Q 010324 213 KSHAECARFSP---DGQ-FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKI 288 (513)
Q Consensus 213 ~~~v~~~~~s~---~g~-~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 288 (513)
.+.+..+.|.. +|. .++-+..+|.|. ++..........+..- ....-....-.++.|++.+..++++..+|.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~-~~r~~~~~ss~~L~~l--s~~ki~~~~~lslD~~~~~~~i~vs~s~G~~ 145 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQ-LYRNDEDESSVHLRGL--SSKKISVVEALSLDISTSGTKIFVSDSRGSI 145 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEE-EEeeccceeeeeeccc--chhhhhheeeeEEEeeccCceEEEEcCCCcE
Confidence 44566666653 455 567778889995 8776543322222111 0000011235688899999999999999999
Q ss_pred EEEEcCCccee--eecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecC-CCceeeE-ecccccceeEEEEcc-CCC
Q 010324 289 KVWRIRSGQCL--RRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLK-SGKLLKE-FRGHSSYVNDAIFTN-DGS 362 (513)
Q Consensus 289 ~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~-~~~~~~~v~~~~~~~-~~~ 362 (513)
.+-+....... +..+ .|..+++...|+. +.+.+++|+.|+.+..||++ .++.+.. .+.|...|.++.-+| .+.
T Consensus 146 ~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred EEEecceeeeeeccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence 96665444333 3555 8999999999986 45688999999999999999 4444444 456888899998887 577
Q ss_pred EEEEEeCCCcEEEEeCCC-CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEE---EeecC
Q 010324 363 RVVTASSDCTVKVWDLKS-TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVK---SFSSG 438 (513)
Q Consensus 363 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~---~~~~~ 438 (513)
+++||+.|-.|++||.|+ ++++..- ...+.|..+.++|.....++++....-.++.+.+..... .+...
T Consensus 225 ~I~TGsYDe~i~~~DtRnm~kPl~~~-------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~ 297 (339)
T KOG0280|consen 225 YIATGSYDECIRVLDTRNMGKPLFKA-------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSD 297 (339)
T ss_pred eEEEeccccceeeeehhcccCccccC-------ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecc
Confidence 999999999999999985 3433222 234789999999987666677777666777777643333 33333
Q ss_pred ccCCCcEEEEEECCCCCEEEEEe-cCceEE-EEECCCc
Q 010324 439 KREGGDFVAACVSPKGEWIYCVG-EDRNLY-CFSHQSG 474 (513)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~-iwd~~~~ 474 (513)
..+.+-.....|.....++++++ .|..++ +|-.-++
T Consensus 298 ~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 298 KIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 33433334444433345677765 455544 5544433
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=7.3e-11 Score=115.41 Aligned_cols=204 Identities=16% Similarity=0.169 Sum_probs=134.8
Q ss_pred cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC---CcEEEEecCCCceeeEecccccceeEEEEccCCCE
Q 010324 287 KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD---STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSR 363 (513)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 363 (513)
.|.++|...+. .+.+. .+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.
T Consensus 180 ~l~~~d~~g~~-~~~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence 47777876544 34443 456788999999999999877644 369999998876533 3333445567899999998
Q ss_pred EEE-EeCCC--cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC--cEEEEEccCeEEEEeecC
Q 010324 364 VVT-ASSDC--TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVVKSFSSG 438 (513)
Q Consensus 364 l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~~~ 438 (513)
++. .+.+| .|.+||+.++.... +. .+........|+|++..++++...++ .|+++++.+.....+...
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~-lt------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~ 329 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSR-VT------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV 329 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEE-cc------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 874 44454 58888998876433 22 12234456789999855666655544 577777765444444321
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecC-c--eEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECC
Q 010324 439 KREGGDFVAACVSPKGEWIYCVGED-R--NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 505 (513)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d 505 (513)
........|+|+|++++..+.+ + .|+++|+.+++...... ........|+|+|++++..+.+
T Consensus 330 ---~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 330 ---GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred ---CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEec
Confidence 1223457899999999887743 3 58899998876543322 2223356899999988776643
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.45 E-value=1.5e-09 Score=99.73 Aligned_cols=275 Identities=16% Similarity=0.213 Sum_probs=171.2
Q ss_pred ccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEec----------CCeEEEEEeccccccccccccccccccc
Q 010324 192 MKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSF----------DGFIEVVWDYLSGKLKKDLQYQADETFM 261 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~----------dg~i~~iwd~~~~~~~~~~~~~~~~~~~ 261 (513)
....+.|....+...++..|..... + +||||+.|+++.. +..|. +||..+.+....+.....-.+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~-v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVE-VIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce--e-ECCCCCEEEEEeccccccccCCCCCEEE-EEECccCcEEeEEccCCCchhh
Confidence 3445566667777788887765554 4 9999999988766 77886 9999999988777653221111
Q ss_pred cCCccEEEEEEcCCCCEEEEEe-C-CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC-
Q 010324 262 MHDETVLCIEFSRDSEMLASGS-Q-DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS- 338 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~- 338 (513)
.......++++|||++|+... . +..|.+.|+.+++.+..+.. .....-...+++..+ +-+.||......+.+
T Consensus 103 -~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 103 -VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTK 177 (352)
T ss_pred -ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCccE--EEeecCceEEEEecCC
Confidence 233445789999999999776 3 68999999999999988863 222222233222222 223345444333221
Q ss_pred Ccee-eE---ecccccce-eEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc-----eeEeecCCCC-CCCCCceeeEEEec
Q 010324 339 GKLL-KE---FRGHSSYV-NDAIFTN-DGSRVVTASSDCTVKVWDLKSTD-----CLQTFKPPPP-LRGGDASVNSVHLF 406 (513)
Q Consensus 339 ~~~~-~~---~~~~~~~v-~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~-~~~~~~~v~~~~~~ 406 (513)
|+.. .. +.....++ ..-.|.+ +|+++++... |+|.+.|+.... ....+..... -.-......-++++
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~ 256 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH 256 (352)
T ss_pred CceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc
Confidence 2211 11 11100000 0113455 7887777766 999999965432 2222211110 00112233348999
Q ss_pred CCCCCeEEEEc---------CCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCC-EEEEEe-cCceEEEEECCCc
Q 010324 407 PKNPDHIVVCN---------KTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGE-WIYCVG-EDRNLYCFSHQSG 474 (513)
Q Consensus 407 ~~~~~~l~~~~---------~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~-~dg~i~iwd~~~~ 474 (513)
+++...++... ..+.|.++|.. .+.+..+..+ ..+..++++|||+ .|++.. .++.|.++|..++
T Consensus 257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG----~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG----HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC----CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 99855555342 22579999988 4555555543 3588999999999 887777 5788999999999
Q ss_pred eeeEee
Q 010324 475 KLEHLM 480 (513)
Q Consensus 475 ~~~~~~ 480 (513)
+.+..+
T Consensus 333 k~i~~i 338 (352)
T TIGR02658 333 KELSSV 338 (352)
T ss_pred eEEeee
Confidence 998887
No 261
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.44 E-value=2.2e-12 Score=107.10 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=103.7
Q ss_pred CccccChhhHHHHHHHHHhhcChHHHHHHHHhhcCcccc-----ccccHHHHHHHhccCChhhHHhhhccc---cCCh--
Q 010324 1 MTLEIEARDVIKIVLQFCKENSLQQTFQTLQNECQVSLN-----TVDSIETFVADINSGRWDAILPQVAQL---KLPR-- 70 (513)
Q Consensus 1 ~~~~~~~~e~~~li~q~L~~~G~~~t~~~L~~Esg~~~~-----~~~~~~~~~~~i~~g~w~~~~~~l~~~---~~~~-- 70 (513)
|.+++..++++|||+.||...||.++|.+|.+|+|+..+ +.+.-..++.+|..|+-++|+..++++ .++.
T Consensus 20 ~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 20 MKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred hccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 578899999999999999999999999999999999773 233445799999999999999999887 2333
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHhCchhhhhccCCHHHHHHHHHHhcccCCC
Q 010324 71 NKLEDLYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEHLLVRTYFD 127 (513)
Q Consensus 71 ~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 127 (513)
..+|.+.+|+++|++..+..++|+.++|....+. .+..++.+..++..+...-++
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~--a~e~~~~~~elE~~l~lLvf~ 154 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPF--AEENPKKMEELERTLALLVFE 154 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcccc--ccccHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999999887774 555557777776666544333
No 262
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=3e-11 Score=111.72 Aligned_cols=271 Identities=16% Similarity=0.183 Sum_probs=189.0
Q ss_pred CCCceeeccCcccccccccccCcccceeeeecccc-CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccc
Q 010324 179 PGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTK-SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257 (513)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~ 257 (513)
+.+.+-+..|...+...+.+.....+...- +.. ..|...-.+.|-..++.-..|.+|. +- ...|... .+.
T Consensus 61 ~DGqY~lAtG~YKP~ikvydlanLSLKFER--hlDae~V~feiLsDD~SK~v~L~~DR~Ie-fH-ak~G~hy-~~R---- 131 (703)
T KOG2321|consen 61 PDGQYLLATGTYKPQIKVYDLANLSLKFER--HLDAEVVDFEILSDDYSKSVFLQNDRTIE-FH-AKYGRHY-RTR---- 131 (703)
T ss_pred CCCcEEEEecccCCceEEEEcccceeeeee--cccccceeEEEeccchhhheEeecCceee-eh-hhcCeee-eee----
Confidence 334566666666655555555543332221 222 3344455566666677777787775 32 2222110 000
Q ss_pred cccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecC
Q 010324 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 337 (513)
Q Consensus 258 ~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 337 (513)
-...-.+|+++.-.--|..++....|+-++++.|..+..+. .....++++..++-..+|++|+.+|.|..||.+
T Consensus 132 -----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 132 -----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred -----cCcCCccccccCCCccEEEeecCcceEEEEccccccccccc-cccccceeeeecCccceEEecccCceEEEecch
Confidence 11223455555433334555556689999999999998887 566899999999999999999999999999999
Q ss_pred CCceeeEecc------ccc-----ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEec
Q 010324 338 SGKLLKEFRG------HSS-----YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLF 406 (513)
Q Consensus 338 ~~~~~~~~~~------~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (513)
+...+..+.. |.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. .+...+|..+.|.
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-----h~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-----HGYELPIKKLDWQ 280 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-----cCCccceeeeccc
Confidence 8876665532 222 49999999999999999999999999999987665432 2446688999998
Q ss_pred CCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 407 PKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 407 ~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
+.+..-.++......+++||-. |+....+.. ...+..+|+-|++..++++.+++.+..|-+..
T Consensus 281 ~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp----t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 281 DTDQQNKVVSMDKRILKIWDECTGKPMASIEP----TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ccCCCceEEecchHHhhhcccccCCceeeccc----cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 8766666777778899999987 555555543 33478899999999999999999888776654
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=6.8e-11 Score=114.17 Aligned_cols=222 Identities=18% Similarity=0.150 Sum_probs=135.7
Q ss_pred cCceeEEEECCCCCEEE---EEecCC--eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC-CC
Q 010324 213 KSHAECARFSPDGQFLV---SCSFDG--FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-DG 286 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la---~g~~dg--~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg 286 (513)
...+.+-+|||||+.++ +...+| .| ++.++.+++...... ..+.....+|+|||+.|+..+. +|
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I-~~~~l~~g~~~~lt~---------~~g~~~~p~wSPDG~~Laf~s~~~g 253 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKI-FLGSLENPAGKKILA---------LQGNQLMPTFSPRKKLLAFISDRYG 253 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceE-EEEECCCCCceEeec---------CCCCccceEECCCCCEEEEEECCCC
Confidence 44556779999998532 444444 45 366777665332111 2344556899999998887653 22
Q ss_pred ----cEEEEEcCCc--ceeeecccccccCeEEEEEccCCCEEEEee-CCCcEEEE--ecCC-CceeeEecccccceeEEE
Q 010324 287 ----KIKVWRIRSG--QCLRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIH--GLKS-GKLLKEFRGHSSYVNDAI 356 (513)
Q Consensus 287 ----~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~--d~~~-~~~~~~~~~~~~~v~~~~ 356 (513)
.+..|++..+ .....+...........+|+|||+.|+..+ .+|...+| ++.. +.....+..+...+....
T Consensus 254 ~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~ 333 (428)
T PRK01029 254 NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA 333 (428)
T ss_pred CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCcccee
Confidence 3444776653 122233212223446789999999888765 45654444 4432 233444544555677899
Q ss_pred EccCCCEEEEEeCC---CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC--CCcEEEEEccCeE
Q 010324 357 FTNDGSRVVTASSD---CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK--TSSIYIMTLQGQV 431 (513)
Q Consensus 357 ~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~ 431 (513)
|+|||+.|+..+.+ ..|.+||+.+++...... ....+....|+|++..+++++.. ...++++++.+..
T Consensus 334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 99999998876643 469999999887543221 12345678899998555555543 3568888888665
Q ss_pred EEEeecCccCCCcEEEEEECCCC
Q 010324 432 VKSFSSGKREGGDFVAACVSPKG 454 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~s~~~ 454 (513)
...+... .+.....+|+|-.
T Consensus 407 ~~~Lt~~---~g~~~~p~Ws~~~ 426 (428)
T PRK01029 407 TRKIVIG---SGEKRFPSWGAFP 426 (428)
T ss_pred EEEeecC---CCcccCceecCCC
Confidence 5555432 2334566777643
No 264
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.42 E-value=5.5e-10 Score=116.51 Aligned_cols=285 Identities=12% Similarity=0.139 Sum_probs=187.2
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEE----eccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCC
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVW----DYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG 286 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iw----d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 286 (513)
...+.|.++.|-++...++.+..+|.| ++. +..+.... ....-...|.+++||||+..|+..+.++
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi-~~~~~~~~~~~~~~E---------~VG~vd~GI~a~~WSPD~Ella~vT~~~ 142 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDI-ILVREDPDPDEDEIE---------IVGSVDSGILAASWSPDEELLALVTGEG 142 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceE-EEEEccCCCCCceeE---------EEEEEcCcEEEEEECCCcCEEEEEeCCC
Confidence 345789999999999999999999999 587 43333221 1111467899999999999999999998
Q ss_pred cEEEEEcC---------------C--------cceeeecc------------c-----------ccccCeEEEEEccCCC
Q 010324 287 KIKVWRIR---------------S--------GQCLRRLE------------R-----------AHSEGVTSLVFSRDGS 320 (513)
Q Consensus 287 ~i~vwd~~---------------~--------~~~~~~~~------------~-----------~~~~~v~~~~~~~~~~ 320 (513)
++.+.+-. . |+....|. . .....-..++|-.||.
T Consensus 143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE 222 (928)
T ss_pred EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence 88876421 0 01001110 0 0222456789999999
Q ss_pred EEEEeeC---C---CcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeEeecCCC
Q 010324 321 QILSTSF---D---STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS---DCTVKVWDLKSTDCLQTFKPPP 391 (513)
Q Consensus 321 ~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~ 391 (513)
++|+.+. . ..++||+- .|.....-..-.+--.+++|.|.|+++++.-. ...|.+|. ++|-....|..+.
T Consensus 223 yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~ 300 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRF 300 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCC
Confidence 9998774 2 47999995 57665554444445567899999999988764 34577776 5565555555443
Q ss_pred CCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeE--EEEeecCccCCCcEEEEEECCCC-CEEEEEecCceEEE
Q 010324 392 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV--VKSFSSGKREGGDFVAACVSPKG-EWIYCVGEDRNLYC 468 (513)
Q Consensus 392 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~i 468 (513)
......+..+.|++++ ..+++...+. |.+|...+.. ++...... ....+..+.|+|.. ..|...+.+|.+..
T Consensus 301 --~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 301 --DPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEI 375 (928)
T ss_pred --CCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEE
Confidence 2345688999999998 7777766554 9999887432 22221111 12223448898854 44666666566654
Q ss_pred EEC----CCce--------eeEeee-----------------------cccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 469 FSH----QSGK--------LEHLMK-----------------------VHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 469 wd~----~~~~--------~~~~~~-----------------------~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
++. ..+. .+..+. .-..+|.+++|++++..+++-..||+|.+|+
T Consensus 376 ~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 376 YDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred EEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 432 2110 111111 1245799999999988899999999999986
No 265
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=1.8e-11 Score=120.95 Aligned_cols=199 Identities=13% Similarity=0.182 Sum_probs=160.1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccC---eEEEEEccCCCEEEEeeCCCcEEEEecCCCce
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEG---VTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 341 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 341 (513)
..|....+.-+...++.++.++.+.+||...+.....+....... ..-+-++++.-++++|+.-+.|.+|+....+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 344445555577788889999999999998877766664222211 22234466777899999999999999875444
Q ss_pred eeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc
Q 010324 342 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 421 (513)
Q Consensus 342 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 421 (513)
-..+.+|.+.|.++.++.||.++++.++|.++++|++.+.+... ....+|...+..++++|. .+++++.|-+
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHsaRvw~~~~~~n---~i~t~gedct 239 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHSARVWACCFLPN---RIITVGEDCT 239 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-----cccccccceeEEEEeccc---eeEEeccceE
Confidence 44688999999999999999999999999999999999987544 233589999999999985 9999999999
Q ss_pred EEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 422 IYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 422 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
.++|+.++..+..+..+. ...+..++..++...+++++.||.+++|+...
T Consensus 240 crvW~~~~~~l~~y~~h~--g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 240 CRVWGVNGTQLEVYDEHS--GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEecccceehhhhhhh--hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999999888877555433 55688999999999999999999999999764
No 266
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.40 E-value=9.2e-10 Score=114.86 Aligned_cols=293 Identities=18% Similarity=0.188 Sum_probs=185.2
Q ss_pred ccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEecc----c---------c----------cccccccccc--
Q 010324 202 TTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYL----S---------G----------KLKKDLQYQA-- 256 (513)
Q Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~----~---------~----------~~~~~~~~~~-- 256 (513)
....-.+-..-...|.|++||||+..||..+.+|++ ++.+.+ . | +....+....
T Consensus 109 ~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l-~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK 187 (928)
T PF04762_consen 109 DEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNL-LLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGK 187 (928)
T ss_pred CCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEE-EEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhh
Confidence 333334433456789999999999999999999988 454321 0 0 0000000000
Q ss_pred ---------------ccccccCCccEEEEEEcCCCCEEEEEeC---C---CcEEEEEcCCcceeeecccccccCeEEEEE
Q 010324 257 ---------------DETFMMHDETVLCIEFSRDSEMLASGSQ---D---GKIKVWRIRSGQCLRRLERAHSEGVTSLVF 315 (513)
Q Consensus 257 ---------------~~~~~~h~~~v~~l~~~~~~~~l~s~~~---d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 315 (513)
...+. +...-..++|-.||.++|+.+. . ..++||+ +.|....+-. .-.+--.+++|
T Consensus 188 ~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE-~v~gLe~~l~W 264 (928)
T PF04762_consen 188 AAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSE-PVDGLEGALSW 264 (928)
T ss_pred hhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccc-cCCCccCCccC
Confidence 01112 3445678999999999998874 2 4799999 5576554443 34444567899
Q ss_pred ccCCCEEEEeeC---CCcEEEEecCCCceeeEec----ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCcee--Ee
Q 010324 316 SRDGSQILSTSF---DSTARIHGLKSGKLLKEFR----GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCL--QT 386 (513)
Q Consensus 316 ~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~ 386 (513)
-|.|+.||+... ...|.+|. ++|-.-..|. .....|..+.|++|+..|+....|. |.+|-..+..-. +.
T Consensus 265 rPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe 342 (928)
T PF04762_consen 265 RPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE 342 (928)
T ss_pred CCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE
Confidence 999999998764 34577776 3454333332 3456799999999999999987666 999988765421 12
Q ss_pred ecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-------------EEEEee----------cC-----
Q 010324 387 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-------------VVKSFS----------SG----- 438 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-------------~~~~~~----------~~----- 438 (513)
+.. .....+..+.|+|..+..+.+.+.+|.+..+++.-. .+..+. ..
T Consensus 343 i~~-----~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPP 417 (928)
T PF04762_consen 343 IRF-----SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPP 417 (928)
T ss_pred EEc-----cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCch
Confidence 221 112234459999998888888888777766554311 111110 00
Q ss_pred -----ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCcee--------eEeee----------cccCCeEEEEEcCC
Q 010324 439 -----KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKL--------EHLMK----------VHEKDVIGVTHHPH 495 (513)
Q Consensus 439 -----~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~--------~~~~~----------~h~~~v~~~~~~p~ 495 (513)
-.-..++..++|++++..+++-..||.|.+|....... ...+. .....+..++|..+
T Consensus 418 Ms~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (928)
T PF04762_consen 418 MSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLND 497 (928)
T ss_pred HhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCC
Confidence 01235788999999998899999999999988543221 11111 12345778888877
Q ss_pred CCEEEEEECC
Q 010324 496 RNLLATYGED 505 (513)
Q Consensus 496 ~~~l~s~~~d 505 (513)
..+++..+.+
T Consensus 498 ~~~~~~~~~~ 507 (928)
T PF04762_consen 498 DTLLVLSDSD 507 (928)
T ss_pred CEEEEEEecC
Confidence 6666655543
No 267
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=5.7e-11 Score=110.57 Aligned_cols=186 Identities=12% Similarity=0.162 Sum_probs=145.9
Q ss_pred cCCCEEEEeeCCCcEEEEecCCCceeeEecc---cccceeEEEEc--------------------cCCCEEEEEeCCCcE
Q 010324 317 RDGSQILSTSFDSTARIHGLKSGKLLKEFRG---HSSYVNDAIFT--------------------NDGSRVVTASSDCTV 373 (513)
Q Consensus 317 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~--------------------~~~~~l~~~~~dg~i 373 (513)
|...++|..+.||.+++||...++....+.. -.+..++..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887776653 23344455542 123467888899999
Q ss_pred EEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-EEEEeecCccCCCcEEEEEECC
Q 010324 374 KVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGKREGGDFVAACVSP 452 (513)
Q Consensus 374 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~s~ 452 (513)
.+|++..++....+... .|.+.|+++.++.+- ..+.+++.|+.+..|+.... ....+... ...+.++|++|
T Consensus 83 ~~ys~~~g~it~~~st~----~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~---~~~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTD----KHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQ---KPLVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecC----CCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccC---CCccceEEEcC
Confidence 99999999988777643 588899999988766 88999999999999999844 44444432 34578999999
Q ss_pred CCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCC-----CCEEE-EEECCCeEEecc
Q 010324 453 KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH-----RNLLA-TYGEDCTMKLWK 512 (513)
Q Consensus 453 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~-----~~~l~-s~~~dg~i~iWd 512 (513)
||..+++++ +.|.+||+++++.+..+.+|.++|++++|-.+ |.++. +...+.-+.+|.
T Consensus 155 D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 999998886 78999999999999999999999999999876 55544 444555577773
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=1.9e-12 Score=133.97 Aligned_cols=224 Identities=17% Similarity=0.214 Sum_probs=173.2
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 342 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 342 (513)
+-..|.++.=+|...+-+||+.||.|++|....++.+..+.......|+.+.|+.+|+.+..+..||.+.+|.+. .++.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 557788999999999999999999999999999998888876667899999999999999999999999999985 7778
Q ss_pred eEecccccceeEEEEccCCCEEEEEe---CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC
Q 010324 343 KEFRGHSSYVNDAIFTNDGSRVVTAS---SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT 419 (513)
Q Consensus 343 ~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 419 (513)
...+.|+...+++.|-. ..+++++ .++.+.+||..-......+. .+|.+.++++++.|.. ..+++|+.+
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-----~~H~~gaT~l~~~P~~-qllisggr~ 2357 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-----TCHDGGATVLAYAPKH-QLLISGGRK 2357 (2439)
T ss_pred eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-----eecCCCceEEEEcCcc-eEEEecCCc
Confidence 88888999899988875 5667665 47889999965332211111 4789999999999987 999999999
Q ss_pred CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeec---ccCC--eEEEEEcC
Q 010324 420 SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV---HEKD--VIGVTHHP 494 (513)
Q Consensus 420 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~--v~~~~~~p 494 (513)
|.|++||++...++.... . +. ...++++|+..|.++||++.....+..++. |.+- ++.....-
T Consensus 2358 G~v~l~D~rqrql~h~~~-------~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v 2425 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQ-------A----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINV 2425 (2439)
T ss_pred CcEEEeehHHHHHHHHhh-------h----hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeee
Confidence 999999998543332211 0 33 567899999999999999988877766653 2211 11122111
Q ss_pred -CCCEEEEEECCCe
Q 010324 495 -HRNLLATYGEDCT 507 (513)
Q Consensus 495 -~~~~l~s~~~dg~ 507 (513)
..+.|.+|+.||+
T Consensus 2426 ~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2426 GQCNRIFSCGADGT 2439 (2439)
T ss_pred ccCceEEEecCCCC
Confidence 3457788888874
No 269
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=3.9e-12 Score=120.72 Aligned_cols=293 Identities=16% Similarity=0.226 Sum_probs=198.3
Q ss_pred cceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccC--CccEEEEEEcCCC--CE
Q 010324 203 TLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMH--DETVLCIEFSRDS--EM 278 (513)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~--~~ 278 (513)
+.-+.+...-.+.+.++..+|.|+-+|.++.-|.. +-|+...-.... +..| .-.|....|+|.. .+
T Consensus 14 tf~kslsl~v~~~~~a~si~p~grdi~lAsr~gl~--i~dld~p~~ppr--------~l~h~tpw~vad~qws~h~a~~~ 83 (1081)
T KOG0309|consen 14 TFGKSLSLKVDGGFNAVSINPSGRDIVLASRQGLY--IIDLDDPFTPPR--------WLHHITPWQVADVQWSPHPAKPY 83 (1081)
T ss_pred ccCceeEEEecCcccceeeccccchhhhhhhcCeE--EEeccCCCCCce--------eeeccCcchhcceecccCCCCce
Confidence 33445555667788999999999999999998876 566654321111 1113 2346778888843 23
Q ss_pred EEEEeCCCcEEEEEcCC--cceeeecccccccCeEEEEEccCC-CEEEEeeCCCcEEEEecCCCc-eeeEecccccceeE
Q 010324 279 LASGSQDGKIKVWRIRS--GQCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGK-LLKEFRGHSSYVND 354 (513)
Q Consensus 279 l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~ 354 (513)
-++......-.+|++.. ...+.-+..+|...|+.+.|+|.. ..+++++.|..+..||+++.. ++..+..-......
T Consensus 84 wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asq 163 (1081)
T KOG0309|consen 84 WIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQ 163 (1081)
T ss_pred eEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCce
Confidence 33334455667898753 344555556899999999999854 578899999999999998764 45555555566788
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCce-eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEE
Q 010324 355 AIFTNDGSRVVTASSDCTVKVWDLKSTDC-LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVK 433 (513)
Q Consensus 355 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 433 (513)
++|+-....+.+.+....|.+||.+.|.. ...++ ++...++.+.|.......+.+++.|+++..||.......
T Consensus 164 Vkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K------~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 164 VKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK------GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred eeecccCcchhhhccCCceEEEeccCCCcceEEec------ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 99987555566667777899999998753 33443 466788888888777788999999999999999733221
Q ss_pred EeecCccCCCcEEEEEECCCCCEEEE--EecCceEEEEE---------CCC-ceeeEeeecccCCeEEEEEcCCC-----
Q 010324 434 SFSSGKREGGDFVAACVSPKGEWIYC--VGEDRNLYCFS---------HQS-GKLEHLMKVHEKDVIGVTHHPHR----- 496 (513)
Q Consensus 434 ~~~~~~~~~~~~~~~~~s~~~~~l~~--g~~dg~i~iwd---------~~~-~~~~~~~~~h~~~v~~~~~~p~~----- 496 (513)
.-.. .....++...++-|-|.-.+. .-.++.+.+++ ..+ .++++.+.||+..|..+.|...+
T Consensus 238 ~~~~-vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d 316 (1081)
T KOG0309|consen 238 SKRT-VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGD 316 (1081)
T ss_pred ccee-ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCC
Confidence 1111 112345666666664432222 12223344433 332 35789999999999888886532
Q ss_pred -----CEEEEEECCCeEEecc
Q 010324 497 -----NLLATYGEDCTMKLWK 512 (513)
Q Consensus 497 -----~~l~s~~~dg~i~iWd 512 (513)
-.|+|-|.|.++++|-
T Consensus 317 ~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 317 YDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred CCccceeEEEeecCCceEeee
Confidence 2799999999999994
No 270
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=4.8e-11 Score=118.00 Aligned_cols=272 Identities=18% Similarity=0.215 Sum_probs=185.5
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCC--ccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD--ETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
+++.+.++-. +||.+|..-. +. +||+..+..+..+... +-...|. +.+.. .+.+++++..-+.+..=
T Consensus 8 ~~l~~~~~~~--~~llag~gp~-i~-~yd~~s~~li~~~~~~--~~~~~H~~e~~~~l-----~~~~~v~~~~~~~v~~~ 76 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGSGPE-IL-VYDLSSGCLIRHLIQS--KILEVHRGEGKVKL-----LSGKIVTCAKSDEVYVK 76 (967)
T ss_pred ccccchhhcc--ceeeecCCCc-eE-EeeCCchhHhhhhhhh--ccccccccccccee-----ccceEEEEEeecceeec
Confidence 3445555444 5777666443 53 9999988876544321 1222241 01111 23455555544444333
Q ss_pred EcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccccc----ceeEEEEccCCCEEEEE
Q 010324 292 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS----YVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~ 367 (513)
+.... ... .....+....+..+...++.++.++.+.+||...+........... ...-+-++++.-++++|
T Consensus 77 ~~~~~-~~~----~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~g 151 (967)
T KOG0974|consen 77 EASNQ-IIE----RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASG 151 (967)
T ss_pred chhhh-hhh----hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEec
Confidence 32211 111 2233344455555778899999999999999988777666553221 12223345666689999
Q ss_pred eCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEE
Q 010324 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVA 447 (513)
Q Consensus 368 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 447 (513)
+.-+.|.+|+.... ..+....+|++.+.++.++.++ .++++.+.|..+++|++....... ...-.|...+..
T Consensus 152 sv~~~iivW~~~~d------n~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 152 SVFGEIIVWKPHED------NKPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWA 223 (967)
T ss_pred cccccEEEEecccc------CCcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccC-cccccccceeEE
Confidence 99999999998722 1222456899999999999888 999999999999999998544333 233446788999
Q ss_pred EEECCCCCEEEEEecCceEEEEECCCceeeEeeeccc-CCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 448 ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHE-KDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 448 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+++.|+ .++++++|-+.++|+.. +..+..+..|. +.+..++.+++....+|++.||.+++|+
T Consensus 224 ~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 224 CCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred EEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 999998 89999999999999754 45555787886 4699999999999999999999999997
No 271
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.37 E-value=4e-10 Score=108.26 Aligned_cols=255 Identities=17% Similarity=0.197 Sum_probs=165.0
Q ss_pred CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecc
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE 303 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 303 (513)
++..+++++.+|.+ +.+|..+|+........ ..+.+.... .+..++.++.+|.+..||..+|+.+....
T Consensus 104 ~~~~v~v~~~~g~l-~ald~~tG~~~W~~~~~---------~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 104 DGGLVFVGTEKGEV-IALDAEDGKELWRAKLS---------SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred cCCEEEEEcCCCEE-EEEECCCCcEeeeeccC---------ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence 56788888999999 49999999887654321 122111111 34567777889999999999999877765
Q ss_pred cccccCe-----EEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccccc----c------e-eEEEEccCCCEEEEE
Q 010324 304 RAHSEGV-----TSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS----Y------V-NDAIFTNDGSRVVTA 367 (513)
Q Consensus 304 ~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~------v-~~~~~~~~~~~l~~~ 367 (513)
. ....+ .+... .+..+++++.+|.+..+|.++|+.+........ . + .+..+ .+..++++
T Consensus 173 ~-~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~ 247 (377)
T TIGR03300 173 R-VTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAV 247 (377)
T ss_pred c-CCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEE
Confidence 2 11111 11112 134778888899999999999987765431100 0 0 11112 34578888
Q ss_pred eCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEE
Q 010324 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFV 446 (513)
Q Consensus 368 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~ 446 (513)
+.+|.+..||..+++........ . ...... .+ ..+++++.+|.++.+|.. ++.+....... .....
T Consensus 248 ~~~g~l~a~d~~tG~~~W~~~~~----~----~~~p~~--~~-~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~--~~~~s 314 (377)
T TIGR03300 248 SYQGRVAALDLRSGRVLWKRDAS----S----YQGPAV--DD-NRLYVTDADGVVVALDRRSGSELWKNDELK--YRQLT 314 (377)
T ss_pred EcCCEEEEEECCCCcEEEeeccC----C----ccCceE--eC-CEEEEECCCCeEEEEECCCCcEEEcccccc--CCccc
Confidence 89999999999999877655411 1 111111 22 678888899999999997 55544332211 11111
Q ss_pred EEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEE-EEEcCCCCEEEEEECCCeEEec
Q 010324 447 AACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG-VTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 447 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-~~~~p~~~~l~s~~~dg~i~iW 511 (513)
.... .+..+++++.+|.|+++|..+|+.+..++.+...+.. ..+. + +.|+.++.||.|..+
T Consensus 315 sp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 315 APAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred cCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 2222 4678999999999999999999999988876654332 2222 3 457788899999875
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.34 E-value=1.9e-09 Score=103.63 Aligned_cols=265 Identities=12% Similarity=0.143 Sum_probs=167.3
Q ss_pred CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecc
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE 303 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 303 (513)
.+..+++++.+|.+. -+|..+|+......... ....... .++..++.++.+|.+..+|..+|+.+.+..
T Consensus 64 ~~~~v~v~~~~g~v~-a~d~~tG~~~W~~~~~~--------~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 132 (377)
T TIGR03300 64 AGGKVYAADADGTVV-ALDAETGKRLWRVDLDE--------RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAK 132 (377)
T ss_pred ECCEEEEECCCCeEE-EEEccCCcEeeeecCCC--------CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeec
Confidence 467888999999994 99999998876554321 1011122 246778888899999999999999887764
Q ss_pred cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccce-----eEEEEccCCCEEEEEeCCCcEEEEeC
Q 010324 304 RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV-----NDAIFTNDGSRVVTASSDCTVKVWDL 378 (513)
Q Consensus 304 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~ 378 (513)
. ...+.+.... .+..++.++.+|.++.||.++|+.+.++......+ .+.... +..++.+..+|.+..+|.
T Consensus 133 ~--~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 133 L--SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDL 207 (377)
T ss_pred c--CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEc
Confidence 2 2222211111 34577888889999999999999887765433211 111222 246778888999999999
Q ss_pred CCCceeEeecCCCCCCCCC-ceeeEEEecC-CCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCC
Q 010324 379 KSTDCLQTFKPPPPLRGGD-ASVNSVHLFP-KNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGE 455 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~ 455 (513)
++|+............... .....+.-.| -.+..+++++.++.++.+|.. ++......... .... ...+.
T Consensus 208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-----~~~p--~~~~~ 280 (377)
T TIGR03300 208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-----YQGP--AVDDN 280 (377)
T ss_pred cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-----ccCc--eEeCC
Confidence 9998765543211100000 0000000011 012678888889999999997 55444333111 1111 23467
Q ss_pred EEEEEecCceEEEEECCCceeeEeeeccc-CCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 456 WIYCVGEDRNLYCFSHQSGKLEHLMKVHE-KDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 456 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+++++.+|.++.+|..+|+.+....... ........ .+..+++++.||.|.+||+
T Consensus 281 ~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 281 RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence 88888999999999999998876553211 12222222 4668888999999999875
No 273
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.34 E-value=1.2e-09 Score=100.01 Aligned_cols=269 Identities=17% Similarity=0.217 Sum_probs=177.4
Q ss_pred CceeEEEECCCCCEEEEEecCC---------------eEEEEEecccccccccccccccc--------------------
Q 010324 214 SHAECARFSPDGQFLVSCSFDG---------------FIEVVWDYLSGKLKKDLQYQADE-------------------- 258 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg---------------~i~~iwd~~~~~~~~~~~~~~~~-------------------- 258 (513)
..|..+.|||.++||.+-+..+ .+ .+||..+|.++..+......
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~-~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV-FVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCce-eEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 4588899999999999965443 37 49999988776544322111
Q ss_pred --ccccC---------------CccEEEEEEcCC--CCEEEE-----EeCCCcEEEEEcCCcceeeecccccccCeEEEE
Q 010324 259 --TFMMH---------------DETVLCIEFSRD--SEMLAS-----GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLV 314 (513)
Q Consensus 259 --~~~~h---------------~~~v~~l~~~~~--~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 314 (513)
.+.-| ...|...+|+|. +..||. .+.++.+++|.+..+..+.+-. -....=..+.
T Consensus 151 ~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-lfk~~~~qLk 229 (561)
T COG5354 151 GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-LFKVSGVQLK 229 (561)
T ss_pred cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-eEeecccEEE
Confidence 01111 256778888885 344554 3567889999998777665543 2233345689
Q ss_pred EccCCCEEEEee-----------CCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEe--CCCcEEEEeCCCC
Q 010324 315 FSRDGSQILSTS-----------FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS--SDCTVKVWDLKST 381 (513)
Q Consensus 315 ~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~ 381 (513)
|++.|+++++-. ....++++++..... .......++|.+.+|.|.++.+++.+ .+..+.++|++..
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 999999876421 124688888864333 33335678999999999888776655 6888999999865
Q ss_pred ceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc---CCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEE
Q 010324 382 DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN---KTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIY 458 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 458 (513)
....+. ...-+.+.|+|.. .+++.++ ..|.+.+||..++....-.. ......-+.|+|||+++.
T Consensus 309 -l~~~~P--------e~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~~~~~~---~~~n~s~~~wspd~qF~~ 375 (561)
T COG5354 309 -LRFYFP--------EQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFKVAGAF---NGLNTSYCDWSPDGQFYD 375 (561)
T ss_pred -eEEecC--------CcccccccccCcc-cEEEEecCCccccceEEeccCCceEEEEEe---ecCCceEeeccCCceEEE
Confidence 333322 2345667788887 5555544 34789999998765443111 122345678999999998
Q ss_pred EEe------cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCC
Q 010324 459 CVG------EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDC 506 (513)
Q Consensus 459 ~g~------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 506 (513)
+.. .|..|.+||+.....- ..+.+.|.|.+++..+.+.+.
T Consensus 376 ~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 376 TDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 775 3788999998654322 456677877777666665544
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.32 E-value=2.7e-09 Score=113.58 Aligned_cols=243 Identities=10% Similarity=0.123 Sum_probs=162.0
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEEcCCcceeeeccc-c------------cccCeEEEEEccCCCEEEEeeC-CCcEE
Q 010324 268 LCIEFSRD-SEMLASGSQDGKIKVWRIRSGQCLRRLER-A------------HSEGVTSLVFSRDGSQILSTSF-DSTAR 332 (513)
Q Consensus 268 ~~l~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~------------~~~~v~~~~~~~~~~~l~~~~~-dg~i~ 332 (513)
..++++++ +..+++-+.++.|++||.. +..+..+.. + .-.....+++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 5566666778899999975 444433321 1 1123578999998887766654 56799
Q ss_pred EEecCCCceeeEeccc-----------------ccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeEeecCCC---
Q 010324 333 IHGLKSGKLLKEFRGH-----------------SSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP--- 391 (513)
Q Consensus 333 i~d~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 391 (513)
++|..++. +.++.+. -....+++++| ++..+++.+.++.|++||..++... .+....
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99986654 3333110 11346789999 5666677778899999999876542 221110
Q ss_pred CC------CCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCc-------------------cCCCcEE
Q 010324 392 PL------RGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGK-------------------REGGDFV 446 (513)
Q Consensus 392 ~~------~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-------------------~~~~~~~ 446 (513)
.. ...-.....++++|++..++++.+.++.|++||+.+.......... .......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 00 0111345679999988567777788899999998743222211100 0011345
Q ss_pred EEEECCCCCEEEEEecCceEEEEECCCceeeEeee-------------cccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 447 AACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK-------------VHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 447 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.++++++|..+++-+.++.|++||..++....... +.-.....++++++|+++++-+.+++|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 88999999988888899999999998876653321 11235788999999999999899999999984
No 275
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.31 E-value=4.2e-09 Score=93.09 Aligned_cols=240 Identities=17% Similarity=0.276 Sum_probs=163.7
Q ss_pred eeEEEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC-----CCcEE
Q 010324 216 AECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-----DGKIK 289 (513)
Q Consensus 216 v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~i~ 289 (513)
...++.+| ++..+|.+-.-|..-++||..+++....+.......|.||. .||+||++|++.-. .|.|-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEE
Confidence 34578889 67788889888887789999999998888888888899994 69999999998743 58999
Q ss_pred EEEcC-CcceeeecccccccCeEEEEEccCCCEEEEee------------------CCCcEEEEecCCCceeeEec----
Q 010324 290 VWRIR-SGQCLRRLERAHSEGVTSLVFSRDGSQILSTS------------------FDSTARIHGLKSGKLLKEFR---- 346 (513)
Q Consensus 290 vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~---- 346 (513)
|||.. +-+.+..+. .+.-....+.+.|||+.|+++- .+.++.+.|..+|+.+.+..
T Consensus 81 Vyd~~~~~~ri~E~~-s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 81 VYDAARGYRRIGEFP-SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred EEECcCCcEEEeEec-CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 99998 556666775 5666778899999998888763 12346667777888776633
Q ss_pred ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEE
Q 010324 347 GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT 426 (513)
Q Consensus 347 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d 426 (513)
.|...|..+++.++|..++..-..| .... ...+++.-..++.+....
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg-------~~~~--------------------------~~PLva~~~~g~~~~~~~ 206 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQG-------DPGD--------------------------APPLVALHRRGGALRLLP 206 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCC-------CCCc--------------------------cCCeEEEEcCCCcceecc
Confidence 2566788888888876444332222 1000 012233333333333333
Q ss_pred ccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEEC
Q 010324 427 LQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE 504 (513)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 504 (513)
...... .....++-+++++++|.++++.+ ..|.+.+||..+++.+....-. .+..++-.+++ +++|.+.
T Consensus 207 ~p~~~~------~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 207 APEEQW------RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred CChHHH------HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCCC
Confidence 321111 11245678999999998887776 6778999999999888776533 45566666555 5555554
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=1.6e-11 Score=113.04 Aligned_cols=282 Identities=14% Similarity=0.213 Sum_probs=185.2
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEecccc-ccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSG-KLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 289 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 289 (513)
||...|..++--.+.+-+++++.|.+|+ +|.+... ..+.+ ..+.-++..|..+|.++.|-.+.++++++ ||-|.
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVK-LWSik~EgD~~~t--saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH 807 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVK-LWSIKPEGDEIGT--SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH 807 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEE-EEEeccccCcccc--ceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence 8999999988878888999999999998 9998742 22221 12334667799999999999998888876 88999
Q ss_pred EEEcCCcceeeeccc-ccccCeEEEEEcc--CCCEEEEe-eCCCcEEEEecCCCceeeEec-----ccccceeEEEEccC
Q 010324 290 VWRIRSGQCLRRLER-AHSEGVTSLVFSR--DGSQILST-SFDSTARIHGLKSGKLLKEFR-----GHSSYVNDAIFTND 360 (513)
Q Consensus 290 vwd~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~ 360 (513)
+||.--|+.+..+.. ...+.+..+...+ +...+++| +...+|+++|.+.++....++ +.+..+.+++..+.
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~ 887 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK 887 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence 999887777654432 1223333444444 34445444 678999999999988776664 34566899999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEE-EEccCeEE-EEeecC
Q 010324 361 GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYI-MTLQGQVV-KSFSSG 438 (513)
Q Consensus 361 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i-~d~~~~~~-~~~~~~ 438 (513)
|++++++-.+|.|.+.|.++|+.+..+.+.. .....++ .|.+ ..++....|..+.+ |-.-.+.. ......
T Consensus 888 GN~lAa~LSnGci~~LDaR~G~vINswrpme------cdllqla-apsd-q~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 888 GNKLAAALSNGCIAILDARNGKVINSWRPME------CDLLQLA-APSD-QALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred cchhhHHhcCCcEEEEecCCCceeccCCccc------chhhhhc-Cchh-HHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 9999999999999999999999887776432 1111111 1222 55566666666666 65443222 221111
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc----eeeEeee--cccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 439 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG----KLEHLMK--VHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
.. . .-..-.-|.-+++....+.+.+|.-... ..+..++ ...+..++++--|-..-+..|+..|.|.+
T Consensus 960 pe-p----ahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 PE-P----AHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Cc-c----hhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11 0 0011223555677766667777742110 1111222 23467788888887777777888888865
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.28 E-value=1.1e-08 Score=109.14 Aligned_cols=255 Identities=9% Similarity=0.040 Sum_probs=162.0
Q ss_pred eEEEECCC-CCEEEEEecCCeEEEEEecccccccccccccccc-----c-cccCCccEEEEEEcCCCCEEEEEeC-CCcE
Q 010324 217 ECARFSPD-GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADE-----T-FMMHDETVLCIEFSRDSEMLASGSQ-DGKI 288 (513)
Q Consensus 217 ~~~~~s~~-g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~-----~-~~~h~~~v~~l~~~~~~~~l~s~~~-dg~i 288 (513)
..++++++ |+.+++-+.++.|+ +||.... ....+...... . -..+-.....++++++++.|+++.. .+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~-v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIV-VTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEE-EEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 35788874 66777777888896 8987543 22211110000 0 0012234688999998887766654 5679
Q ss_pred EEEEcCCcceeeecccc----------------cccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCceeeEecc----
Q 010324 289 KVWRIRSGQCLRRLERA----------------HSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRG---- 347 (513)
Q Consensus 289 ~vwd~~~~~~~~~~~~~----------------~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---- 347 (513)
+++|..++.. .++... .-.....++++| ++..+++.+.++.|++||..++... .+.+
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9999877653 322100 012346899999 5556666677899999998776532 2211
Q ss_pred -----------cccceeEEEEccCCCEE-EEEeCCCcEEEEeCCCCceeEeecCC----C---CCC--------CCCcee
Q 010324 348 -----------HSSYVNDAIFTNDGSRV-VTASSDCTVKVWDLKSTDCLQTFKPP----P---PLR--------GGDASV 400 (513)
Q Consensus 348 -----------~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~----~---~~~--------~~~~~v 400 (513)
.-.....++++|+++.| ++-+.++.|++||+.++......... . ... ..-...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 11235679999999854 45556789999999876532111000 0 000 011234
Q ss_pred eEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCcc-----------CCCcEEEEEECCCCCEEEEEecCceEEEE
Q 010324 401 NSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKR-----------EGGDFVAACVSPKGEWIYCVGEDRNLYCF 469 (513)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-----------~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 469 (513)
..+++.+++ .++++...++.|++||..+..+..+..... .-.....++++++|+.+++-+.++.|++|
T Consensus 807 ~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 678888877 688888899999999998665554432110 11246789999999988888899999999
Q ss_pred ECCCcee
Q 010324 470 SHQSGKL 476 (513)
Q Consensus 470 d~~~~~~ 476 (513)
|+.+++.
T Consensus 886 d~~~~~~ 892 (1057)
T PLN02919 886 DLNKGEA 892 (1057)
T ss_pred ECCCCcc
Confidence 9988764
No 278
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.26 E-value=2.4e-08 Score=89.71 Aligned_cols=219 Identities=16% Similarity=0.117 Sum_probs=147.9
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEc-cCCCEEEEeeCCCcEEEEecCCCceeeEec
Q 010324 269 CIEFSR-DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS-RDGSQILSTSFDSTARIHGLKSGKLLKEFR 346 (513)
Q Consensus 269 ~l~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 346 (513)
++.|.+ ++.++++--..+.|..|+..++.... +. ... ...+++. ++ ..++++..+ .+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~--~~~-~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-ID--LPG-PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EE--SSS-EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Ee--cCC-CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEee
Confidence 577888 66666666678999999988776533 22 122 6777887 56 455666654 44556988885543333
Q ss_pred c-----cccceeEEEEccCCCEEEEEeCC--------CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeE
Q 010324 347 G-----HSSYVNDAIFTNDGSRVVTASSD--------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 413 (513)
Q Consensus 347 ~-----~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 413 (513)
. .....+++++.|+|+..++.... |.|..++.. ++...... .-...+.++|+|++..++
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-------~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-------GLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-------EESSEEEEEEETTSSEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-------CcccccceEECCcchhee
Confidence 2 34578999999999977776643 567888877 44333322 123568999999986666
Q ss_pred EEEcCCCcEEEEEcc--Ce---EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeE
Q 010324 414 VVCNKTSSIYIMTLQ--GQ---VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI 488 (513)
Q Consensus 414 ~~~~~~~~i~i~d~~--~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 488 (513)
++-+..+.|..+++. +. ....+.......+..-.+++..+|++.++....+.|.+++.. |+.+..+......++
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t 228 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPT 228 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEE
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEE
Confidence 788889999999986 32 122232222222347789999999988888889999999987 888888877766899
Q ss_pred EEEEc-CCCCEEEEE
Q 010324 489 GVTHH-PHRNLLATY 502 (513)
Q Consensus 489 ~~~~~-p~~~~l~s~ 502 (513)
+++|. |+.+.|...
T Consensus 229 ~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 229 NCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEESTTSSEEEEE
T ss_pred EEEEECCCCCEEEEE
Confidence 99994 565544433
No 279
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1e-09 Score=105.28 Aligned_cols=241 Identities=14% Similarity=0.159 Sum_probs=185.1
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCC------------CEEEEeeCCCc
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDG------------SQILSTSFDST 330 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg~ 330 (513)
|...-.++.|+|.| ++|.|+ ...|.+-|..+-+.++.+. .|...|+.+.|.|.. -.|+++...|.
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred CcccccccccCccc-eEEEec-CceEEEEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 44457788999887 577776 4589999999999999997 789999999998731 25777888899
Q ss_pred EEEEecCCCceeeEecccccceeEEEEcc---CC-CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEec
Q 010324 331 ARIHGLKSGKLLKEFRGHSSYVNDAIFTN---DG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLF 406 (513)
Q Consensus 331 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (513)
|.+||...+..+..+..+..++.+++|-+ +. ..|++-....++.+|+..+|+....... ......++.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y------s~~iLs~f~~D 164 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY------SHEILSCFRVD 164 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc------CCcceeeeeeC
Confidence 99999999999999999999999999976 33 4677777788999999999998776652 23456678999
Q ss_pred CCCCCeEEEEcCCCcEEEEEcc--------CeEEEEeecCcc-------------CC---------CcEEEEEECCCCCE
Q 010324 407 PKNPDHIVVCNKTSSIYIMTLQ--------GQVVKSFSSGKR-------------EG---------GDFVAACVSPKGEW 456 (513)
Q Consensus 407 ~~~~~~l~~~~~~~~i~i~d~~--------~~~~~~~~~~~~-------------~~---------~~~~~~~~s~~~~~ 456 (513)
|.+...+..-+..|.+.+.+.- ++.......+.. .. .....++|+|.-+.
T Consensus 165 Pfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn 244 (1062)
T KOG1912|consen 165 PFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN 244 (1062)
T ss_pred CCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence 9888888888888888877653 222221111100 00 01123567888777
Q ss_pred EEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCC--CEEEEEECCCeEEecc
Q 010324 457 IYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR--NLLATYGEDCTMKLWK 512 (513)
Q Consensus 457 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~--~~l~s~~~dg~i~iWd 512 (513)
++.......++++|++-..++....-..+.+.-+.|-|++ ..|.+.-.||.+.||-
T Consensus 245 ~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 245 ILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred eEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 7777888899999999988888888788878888888865 5788889999999983
No 280
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=6.6e-10 Score=106.60 Aligned_cols=246 Identities=15% Similarity=0.219 Sum_probs=166.1
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCC------------CEEEE
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS------------EMLAS 281 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~------------~~l~s 281 (513)
+.-.++.|+|.| ++|.|+.. .| .+-|..+-+.+..+. .|...|+.+.|.|-. -.||+
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV-~VVDs~s~q~iqsie--------~h~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LV-SVVDSRSLQLIQSIE--------LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eE-EEEehhhhhhhhccc--------cCccceeEEEeccCCCchhccCccccceeEEe
Confidence 335678899977 67777755 45 377777666655444 389999999998721 26778
Q ss_pred EeCCCcEEEEEcCCcceeeecccccccCeEEEEEcc---CC-CEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEE
Q 010324 282 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR---DG-SQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIF 357 (513)
Q Consensus 282 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 357 (513)
+...|.|.+||+..+..+..+. .+..++..++|-+ +. ..|++-....++.+|+..+|+...+.........|+.+
T Consensus 85 aD~~GrIil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~ 163 (1062)
T KOG1912|consen 85 ADISGRIILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRV 163 (1062)
T ss_pred ccccCcEEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeee
Confidence 8889999999999998888887 7888999999976 33 45666677889999999999999888877777888999
Q ss_pred cc-CCCEEEEEeCCCcEEEEeCCCCc----eeE--eecCCCCC-----------CCCCce---------eeEEEecCCCC
Q 010324 358 TN-DGSRVVTASSDCTVKVWDLKSTD----CLQ--TFKPPPPL-----------RGGDAS---------VNSVHLFPKNP 410 (513)
Q Consensus 358 ~~-~~~~l~~~~~dg~i~iwd~~~~~----~~~--~~~~~~~~-----------~~~~~~---------v~~~~~~~~~~ 410 (513)
.| |.+.+...+..|.+.+-+.-... +.+ .+.....- ..+... .-.++|+|.-.
T Consensus 164 DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r 243 (1062)
T KOG1912|consen 164 DPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR 243 (1062)
T ss_pred CCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh
Confidence 98 66677777777877777643211 111 11111000 000000 12245566653
Q ss_pred CeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 411 DHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 411 ~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
+ ++.......+.++|++ ...+..... ...+..+..+--.|....++++..||.+.+|-.+.
T Consensus 244 n-~lfi~~prellv~dle~~~~l~vvpi-er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 244 N-ILFITFPRELLVFDLEYECCLAVVPI-ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred c-eEEEEeccceEEEcchhhceeEEEEe-ccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 3 4444556788999998 334443333 22333444444455667899999999999997654
No 281
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.24 E-value=9.9e-09 Score=93.27 Aligned_cols=152 Identities=16% Similarity=0.204 Sum_probs=122.0
Q ss_pred eeeeeccccCceeEEEECCCCCEEEEEecCC-eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEe
Q 010324 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDG-FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS 283 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg-~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 283 (513)
-..++.+|.+.|.-..+..+++-++.|..|| .+- |+|..+++..... ..-+.|.++..+|+|++++.+.
T Consensus 351 ~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~-iyd~~~~e~kr~e---------~~lg~I~av~vs~dGK~~vvaN 420 (668)
T COG4946 351 GYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLG-IYDKDGGEVKRIE---------KDLGNIEAVKVSPDGKKVVVAN 420 (668)
T ss_pred CeeEEcCCCCceEEEEEccCCcceEEeccCCceEE-EEecCCceEEEee---------CCccceEEEEEcCCCcEEEEEc
Confidence 3466779999999999999999999999999 774 9999988754322 2567899999999999999998
Q ss_pred CCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCC----cEEEEecCCCceeeEecccccceeEEEEcc
Q 010324 284 QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS----TARIHGLKSGKLLKEFRGHSSYVNDAIFTN 359 (513)
Q Consensus 284 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 359 (513)
....+.+.|+.+|... .+.....+-|+.+.|+|+++.+|.+--+| .|+++|+..++...... ..+.=.+-+|.|
T Consensus 421 dr~el~vididngnv~-~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~ 498 (668)
T COG4946 421 DRFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP 498 (668)
T ss_pred CceEEEEEEecCCCee-EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC
Confidence 8889999999999854 44446678899999999999999887666 68999998777654433 333445668999
Q ss_pred CCCEEEEEe
Q 010324 360 DGSRVVTAS 368 (513)
Q Consensus 360 ~~~~l~~~~ 368 (513)
++++|..-+
T Consensus 499 d~ryLYfLs 507 (668)
T COG4946 499 DGRYLYFLS 507 (668)
T ss_pred CCcEEEEEe
Confidence 999876554
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.5e-08 Score=97.33 Aligned_cols=207 Identities=13% Similarity=0.104 Sum_probs=132.5
Q ss_pred cEEEEEEcCCCCE-EEEEeCC---CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEee-C--CCcEEEEecCC
Q 010324 266 TVLCIEFSRDSEM-LASGSQD---GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS-F--DSTARIHGLKS 338 (513)
Q Consensus 266 ~v~~l~~~~~~~~-l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~--dg~i~i~d~~~ 338 (513)
.+....|+|||+. ++..+.+ ..|.++|+.+++...... .........|+|||+.++... . +..|+++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 6778999999985 6654443 469999998887544332 445566788999998876543 2 35688889877
Q ss_pred CceeeEecccccceeEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE
Q 010324 339 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DC--TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV 415 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 415 (513)
++. ..+..+........|+|||+.++..+. .| .|.+.|+.+++..+.... +. ....|+|++..++++
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-----g~----~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-----GK----NNSSVSTYKNYIVYS 336 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-----CC----cCceECCCCCEEEEE
Confidence 763 344444433445689999998777664 23 588888887765332211 11 123899999656555
Q ss_pred EcCC--------CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC---ceEEEEECCCceeeEeeeccc
Q 010324 416 CNKT--------SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED---RNLYCFSHQSGKLEHLMKVHE 484 (513)
Q Consensus 416 ~~~~--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~ 484 (513)
.... ..|++.|+.+...+.+.... ......|+|||+.|+..+.+ ..+.+.++... ....+....
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~-~~~~l~~~~ 411 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIRRLTANG----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN-KSFLFPLKV 411 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeEECCCCC----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC-eeEEeecCC
Confidence 5443 36888888866666655432 22357899999988777643 24667777543 333343334
Q ss_pred CCeEE
Q 010324 485 KDVIG 489 (513)
Q Consensus 485 ~~v~~ 489 (513)
+.+..
T Consensus 412 g~~~~ 416 (419)
T PRK04043 412 GKIQS 416 (419)
T ss_pred CccCC
Confidence 44443
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=4.6e-10 Score=106.63 Aligned_cols=233 Identities=14% Similarity=0.205 Sum_probs=168.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcce---------------eeecccccccCeEEEEEccCCCEEEEeeC
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC---------------LRRLERAHSEGVTSLVFSRDGSQILSTSF 327 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 327 (513)
......|++|+....++|.|+.||.++|..+.+... -+++. +|...|..+.|+.+...|-+...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEeccccccccccCC
Confidence 346788999999999999999999999998865321 13343 89999999999999999999999
Q ss_pred CCcEEEEecCCCceeeEec--ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEe
Q 010324 328 DSTARIHGLKSGKLLKEFR--GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHL 405 (513)
Q Consensus 328 dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
+|.|.+|-+-.|.....+. ..++.|.+++|+.||..+.....||.|.+=.++..+ +.--.. .......+.|
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeL------kg~~l~hv~w 164 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKEL------KGQLLAHVLW 164 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhc------chheccceee
Confidence 9999999987776544332 245679999999999999999999999887765432 211111 1123457789
Q ss_pred cCCCCCeEEEEcCCCcEEEEEccCeEEEEee---------cCccCCCcEEEEEE--------CCCCCEEEEEecCceEEE
Q 010324 406 FPKNPDHIVVCNKTSSIYIMTLQGQVVKSFS---------SGKREGGDFVAACV--------SPKGEWIYCVGEDRNLYC 468 (513)
Q Consensus 406 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~---------~~~~~~~~~~~~~~--------s~~~~~l~~g~~dg~i~i 468 (513)
+++. ..++.+-.+|.+.++|..+.....+. .....+..+..++| -|+...++++-.+|.+.+
T Consensus 165 s~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 165 SEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred cccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 9887 67777788899999998754211111 11111222444554 257788999999999988
Q ss_pred EECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECC
Q 010324 469 FSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 505 (513)
Q Consensus 469 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d 505 (513)
..-.+......+.. .-.+....|+++|..||.+|.|
T Consensus 244 MR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hhhcCCCCCeEEec-ccEeecceecCCCcEEEEccCc
Confidence 76554433333332 2568899999999999999865
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.22 E-value=6.7e-09 Score=87.48 Aligned_cols=246 Identities=10% Similarity=0.000 Sum_probs=154.9
Q ss_pred eEEEECC-----CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEE-cCCCCEEEEEeCCCcEEE
Q 010324 217 ECARFSP-----DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF-SRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 217 ~~~~~s~-----~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~l~s~~~dg~i~v 290 (513)
+.+.|.| ...+||.|+..|... +|...+.+....+- ..|...|.-+.= .-....+..++.|.++++
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd-~~~~~tn~~h~~~c-------d~snn~v~~~~r~cd~~~~~~i~sndht~k~ 142 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFD-LFACNTNDGHLYQC-------DVSNNDVTLVKRYCDLKFPLNIASNDHTGKT 142 (344)
T ss_pred ecccccchHhhccccEEEeccccceee-eecccCcccceeee-------cccccchhhhhhhcccccceeeccCCcceeE
Confidence 3466666 346899999999998 99988665432211 112222211110 011224566778888998
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC-cee-e-EecccccceeEEEEccCCCEEEEE
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-KLL-K-EFRGHSSYVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~-~-~~~~~~~~v~~~~~~~~~~~l~~~ 367 (513)
.+++.+....... ...-.+.++++++|++++++.+....|..|.+... +.+ . ........-.+..|+.....+|++
T Consensus 143 ~~~~~~s~~~~~h-~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 143 MVVSGDSNKFAVH-NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred EEEecCcccceee-ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEE
Confidence 8887554333222 11234889999999999999999999999988643 222 2 222233445677899988999999
Q ss_pred eCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCC-CeEEEEcCCCcEEEEEccC-eEEEEeecCc-----c
Q 010324 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP-DHIVVCNKTSSIYIMTLQG-QVVKSFSSGK-----R 440 (513)
Q Consensus 368 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~-----~ 440 (513)
+.||++.|||++............ ...|.+.+..+.|++.+. ++++....-+.+.+.|++. .....+.... .
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~sst-rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~ 300 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEISST-RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKH 300 (344)
T ss_pred ecCCcEEEEEecccccchhhhccc-CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccc
Confidence 999999999999765443332222 224889999999998664 4566666678899999983 3222222211 1
Q ss_pred CCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 441 EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 441 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
....+...+|+.++.-+.+.+++ .+.-|++.+
T Consensus 301 ~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 301 NTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred cccccccccccCCCcccccccch-hhheeeccc
Confidence 12236666777776666555533 344455443
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=4e-11 Score=110.44 Aligned_cols=204 Identities=16% Similarity=0.243 Sum_probs=142.6
Q ss_pred eeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC-------CceeeEecccccceeEEEEccCCCEEEEEeCCC
Q 010324 299 LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS-------GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC 371 (513)
Q Consensus 299 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 371 (513)
+..+. +|...|..++--.+.+.+++++.|.+|++|.++. ..+..+++.|+.+|.++.|-.+-+++++ .||
T Consensus 728 L~nf~-GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~ 804 (1034)
T KOG4190|consen 728 LCNFT-GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDG 804 (1034)
T ss_pred eeccc-CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccC
Confidence 34454 7888898888877888999999999999999863 2366788899999999999988777765 478
Q ss_pred cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC--CCCeEEEEcCCCcEEEEEcc-CeEEEEe--ecCccCCCcEE
Q 010324 372 TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK--NPDHIVVCNKTSSIYIMTLQ-GQVVKSF--SSGKREGGDFV 446 (513)
Q Consensus 372 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~~ 446 (513)
.|++||.--++.+..+.... ..+.+..+...++ ..-.++.|+...+++++|.+ ..-...+ ......+..+.
T Consensus 805 giHlWDPFigr~Laq~~dap----k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAP----KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeecccccchhHhhhcCc----ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 89999988777665443322 1233334444443 22344555788999999998 2222222 22233456678
Q ss_pred EEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 447 AACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 447 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
++++.+.|+.++++-.+|.|.+.|.++|+.+..++...-....++- |..+.|+....|.++.+
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaV 943 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAV 943 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEe
Confidence 9999999999999999999999999999988876644333333322 33344454445555544
No 286
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=6.4e-09 Score=96.51 Aligned_cols=249 Identities=13% Similarity=0.233 Sum_probs=159.7
Q ss_pred eEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCC--CEEEE-----EeCCCcEE
Q 010324 217 ECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS--EMLAS-----GSQDGKIK 289 (513)
Q Consensus 217 ~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s-----~~~dg~i~ 289 (513)
++..|++|..+.|-- ..+.+. +|+..+.+.... .-|...|+.+.+||.+ ..+|+ .+.-+.|+
T Consensus 129 W~~qfs~dEsl~arl-v~nev~-f~~~~~f~~~~~---------kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vr 197 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQ-FYDLGSFKTIQH---------KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVR 197 (566)
T ss_pred cccccccchhhhhhh-hcceEE-EEecCCccceee---------eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEE
Confidence 689999987654433 345675 898876332211 1178889999999963 34443 34556899
Q ss_pred EEEcCCcceeeecc--cccccCeEEEEEccCCCEEE-Ee--eCC---------CcEEEEecCCCceeeEecccccceeEE
Q 010324 290 VWRIRSGQCLRRLE--RAHSEGVTSLVFSRDGSQIL-ST--SFD---------STARIHGLKSGKLLKEFRGHSSYVNDA 355 (513)
Q Consensus 290 vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~-~~--~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~~ 355 (513)
||....+..-..+. .-....=..+.|++-|.-|+ .+ .-| .+++++++........+. ..++|.++
T Consensus 198 i~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv 276 (566)
T KOG2315|consen 198 IYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDV 276 (566)
T ss_pred EeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEE
Confidence 99876322111111 01223345688988776433 22 223 368888886333333333 47899999
Q ss_pred EEccCCCEEEE--EeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC---CCcEEEEEccCe
Q 010324 356 IFTNDGSRVVT--ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK---TSSIYIMTLQGQ 430 (513)
Q Consensus 356 ~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~ 430 (513)
.|+|+|+-+++ |-.-..+.|||++ +.++..+. .++-+++-|+|.+ ++++.++- .|.+.+||....
T Consensus 277 ~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--------egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 277 TWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--------EGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred EECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--------CCCccceEECCCC-CEEEEeecCCCCCceEEEeccch
Confidence 99999986654 4456789999987 45555553 4577889999998 55554443 489999999853
Q ss_pred -EEEEeecCccCCCcEEEEEECCCCCEEEEEec------CceEEEEECCCceeeEeeecccCCeEEEEEcC
Q 010324 431 -VVKSFSSGKREGGDFVAACVSPKGEWIYCVGE------DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494 (513)
Q Consensus 431 -~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p 494 (513)
.+..+.. ...+-+.|+|||+++++++. |+.++||+.. |.++....-.. ....+.|-|
T Consensus 347 K~i~~~~a-----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 347 KLIAKFKA-----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKS-ELLQVEWRP 410 (566)
T ss_pred hhcccccc-----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhH-hHhheeeee
Confidence 3333322 23567899999999999884 7889999974 55544332221 567777776
No 287
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1.2e-10 Score=121.16 Aligned_cols=214 Identities=14% Similarity=0.234 Sum_probs=159.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecc-cccceeE
Q 010324 276 SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG-HSSYVND 354 (513)
Q Consensus 276 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~ 354 (513)
++.+.....++...-|..+.+.... ..+-..|.++.-+|...+.++|+.||.+++|....++.+..++. ....|+.
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~~~---k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASVMI---KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred cccCCcccCCccccceecccceeEe---ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence 3444444455555556544333221 13456788888899889999999999999999988888877753 3478999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE---cCCCcEEEEEccCeE
Q 010324 355 AIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC---NKTSSIYIMTLQGQV 431 (513)
Q Consensus 355 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~~~~i~i~d~~~~~ 431 (513)
+.|+.+|+.+..+..||.+.+|... .++.... +.|+.....+.|.. ..++++ +.++.+.+||..-..
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~------qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW------QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-Ccceecc------ccCCccccceeeee---hhhhccccCCCCCcccchhcccCc
Confidence 9999999999999999999999987 2222222 35666777777765 344444 356889999986322
Q ss_pred EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 432 VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
...+.. ..|.+.++++++.|..+.+++|+.+|.|++||++..++++.++. ++ ...++++|+..|.++||
T Consensus 2327 ~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw 2395 (2439)
T KOG1064|consen 2327 MNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIW 2395 (2439)
T ss_pred ccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEE
Confidence 222221 44667799999999999999999999999999999888877765 55 67899999999999999
Q ss_pred cC
Q 010324 512 KP 513 (513)
Q Consensus 512 dp 513 (513)
+.
T Consensus 2396 ~~ 2397 (2439)
T KOG1064|consen 2396 RL 2397 (2439)
T ss_pred Ec
Confidence 73
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=3.8e-08 Score=94.57 Aligned_cols=202 Identities=13% Similarity=0.091 Sum_probs=128.5
Q ss_pred CcEEEEEcCCcceeeecccccccCeEEEEEccCCCE-EEEeeCC---CcEEEEecCCCceeeEecccccceeEEEEccCC
Q 010324 286 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ-ILSTSFD---STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG 361 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 361 (513)
..|.+-|.. |...+.+... .......|+|||+. ++..+.+ ..|+++|+.+++...-.. ..+......|+|||
T Consensus 169 ~~l~~~d~d-g~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYT-LTYQKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCC-CCceeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 356665644 3334444322 37788999999985 6654443 469999998876544333 44556678899999
Q ss_pred CEEEEEe-C--CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC--cEEEEEccCeEEEEee
Q 010324 362 SRVVTAS-S--DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVVKSFS 436 (513)
Q Consensus 362 ~~l~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~ 436 (513)
+.++... . +..|.++|+.++.... +... ........|+|++..++++....+ .|+++|+.+.....+.
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNY------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEE-cccC------CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence 8776543 2 3468888988776433 3211 112334579999966666665554 5777788765554444
Q ss_pred cCccCCCcEEEEEECCCCCEEEEEecC---------ceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECC
Q 010324 437 SGKREGGDFVAACVSPKGEWIYCVGED---------RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 505 (513)
Q Consensus 437 ~~~~~~~~~~~~~~s~~~~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d 505 (513)
.... . ...|+|+|++++..+.. ..|++.|+.++....... . +......|+|||+.++..+.+
T Consensus 318 ~~g~---~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 318 FHGK---N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-N-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred cCCC---c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC-C-CCcCCeEECCCCCEEEEEEcc
Confidence 3211 1 24899999999877643 378999998886543332 2 233468899999987766543
No 289
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.16 E-value=4.2e-08 Score=94.70 Aligned_cols=259 Identities=13% Similarity=0.099 Sum_probs=162.4
Q ss_pred CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEE-EEEcCCCCEEEEEeCCCcEEEEEcCCcceeeec
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLC-IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 302 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 302 (513)
++..++.++.+|.+. -+|..+|+........ ..+.+ ... .+..++.++.+|.+..+|..+|+.+.+.
T Consensus 119 ~~~~v~v~~~~g~l~-ald~~tG~~~W~~~~~---------~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 119 AGGKVYIGSEKGQVY-ALNAEDGEVAWQTKVA---------GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred ECCEEEEEcCCCEEE-EEECCCCCCcccccCC---------CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 356778888899994 9999999988765531 11111 111 2446777788999999999999988777
Q ss_pred cccccc----CeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccccc-------ceeEEEEcc--CCCEEEEEeC
Q 010324 303 ERAHSE----GVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS-------YVNDAIFTN--DGSRVVTASS 369 (513)
Q Consensus 303 ~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~ 369 (513)
...... ...+-.. .+..++.++.+|.+..+|..+|+.+........ ....+.-+| .+..++.++.
T Consensus 187 ~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~ 264 (394)
T PRK11138 187 NLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY 264 (394)
T ss_pred cCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc
Confidence 522110 0011111 234577788899999999999987665432110 011111222 2456777888
Q ss_pred CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEE
Q 010324 370 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAA 448 (513)
Q Consensus 370 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~ 448 (513)
+|.+..+|..+++.+....... ...+.. . ...+++++.++.++.+|.. +..+....... .....+.
T Consensus 265 ~g~l~ald~~tG~~~W~~~~~~--------~~~~~~--~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~sp 331 (394)
T PRK11138 265 NGNLVALDLRSGQIVWKREYGS--------VNDFAV--D-GGRIYLVDQNDRVYALDTRGGVELWSQSDLL--HRLLTAP 331 (394)
T ss_pred CCeEEEEECCCCCEEEeecCCC--------ccCcEE--E-CCEEEEEcCCCeEEEEECCCCcEEEcccccC--CCcccCC
Confidence 9999999999998776543211 111111 1 2678888889999999997 44433322111 1111111
Q ss_pred EECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEE-EEEcCCCCEEEEEECCCeEEeccC
Q 010324 449 CVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG-VTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 449 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+ .+..|+.++.+|.++++|..+|+.+.........+.+ ..+ .+..|+.++.||.|..+++
T Consensus 332 ~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 332 VL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 12 2567889999999999999999988877654333322 122 3457888899999987753
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.15 E-value=5.3e-10 Score=99.42 Aligned_cols=163 Identities=20% Similarity=0.309 Sum_probs=113.7
Q ss_pred eeEEEECCCCCEEEEEecCCeEEEEEecccccc-ccccccccccccccCCccEEEEEEcCCCCEEEEEe---CCCcEEEE
Q 010324 216 AECARFSPDGQFLVSCSFDGFIEVVWDYLSGKL-KKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS---QDGKIKVW 291 (513)
Q Consensus 216 v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~---~dg~i~vw 291 (513)
+..+..+|+++++|++..+.... ++++..... .+... ... -...-+++.|..+......+. ....+.+|
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~-~f~~~~~~~~~kl~~---~~~---v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRA-VFDYRENPKGAKLLD---VSC---VPKRPTAISFIREDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred ccccccCCCceEEEEEeCCCceE-EEEEecCCCcceeee---Eee---cccCcceeeeeeccceEEEEeecCCceeeeee
Confidence 34466788899999988877763 666654332 11110 001 122334444544444444443 34455666
Q ss_pred EcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe-cccccceeEEEEccCCCEEEEEeCC
Q 010324 292 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF-RGHSSYVNDAIFTNDGSRVVTASSD 370 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d 370 (513)
....+.+...+ +|-+.+..++|+||+++++++..|..|++-.......+..+ -+|+..|..++..++ ..|++++.|
T Consensus 138 s~~~~~~~~~l--GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD 214 (390)
T KOG3914|consen 138 SADSGRCEPIL--GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGD 214 (390)
T ss_pred cccccCcchhh--hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCC
Confidence 65555544333 79999999999999999999999999999877655555555 469999999999875 459999999
Q ss_pred CcEEEEeCCCCceeEeec
Q 010324 371 CTVKVWDLKSTDCLQTFK 388 (513)
Q Consensus 371 g~i~iwd~~~~~~~~~~~ 388 (513)
+++++||+++|+.+.++.
T Consensus 215 ~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CcEEEEecccCCcccccc
Confidence 999999999999887664
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.15 E-value=1.8e-07 Score=80.30 Aligned_cols=241 Identities=17% Similarity=0.240 Sum_probs=141.2
Q ss_pred EEEECCCCCEEEEEecCCeEEEEEecccc--ccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010324 218 CARFSPDGQFLVSCSFDGFIEVVWDYLSG--KLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS 295 (513)
Q Consensus 218 ~~~~s~~g~~la~g~~dg~i~~iwd~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~ 295 (513)
.++.+++|+.||+-- |..|. |=...+. ..+..... .+.....=.-++||||+..||.+...|+|+++|+..
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iE-iRsa~Ddf~si~~kcqV-----pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIE-IRSAKDDFSSIIGKCQV-----PKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEE-EEeccCCchheeEEEec-----CCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 356788999888764 55554 5333221 11111111 111223456799999999999999999999999874
Q ss_pred cceeeecccc------cccCeEEEEEccC------CCEEEEeeCCCcEEEEecCCC-----ceeeEec--c-cccceeEE
Q 010324 296 GQCLRRLERA------HSEGVTSLVFSRD------GSQILSTSFDSTARIHGLKSG-----KLLKEFR--G-HSSYVNDA 355 (513)
Q Consensus 296 ~~~~~~~~~~------~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~--~-~~~~v~~~ 355 (513)
..+..+... ....|..+.|.+. ...|++-..+|.++-|-+..+ +....+. . +...|.++
T Consensus 75 -~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~ 153 (282)
T PF15492_consen 75 -SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSA 153 (282)
T ss_pred -ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEE
Confidence 333333322 2356777777652 225677778888877765322 2333332 2 36689999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcE-------EEEEcc
Q 010324 356 IFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI-------YIMTLQ 428 (513)
Q Consensus 356 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i-------~i~d~~ 428 (513)
.++|..+.|++|+.... ..+. ..+....+++-....+.+.+..+...+..+ .++.+-
T Consensus 154 vy~p~h~LLlVgG~~~~------~~~~----------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~ 217 (282)
T PF15492_consen 154 VYHPKHRLLLVGGCEQN------QDGM----------SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIP 217 (282)
T ss_pred EEcCCCCEEEEeccCCC------CCcc----------ccccccCceEEEEcCCCCcEEEccccCccccccccccceeecc
Confidence 99999888888775321 0000 001122333333333333333322222221 122211
Q ss_pred CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeeccc
Q 010324 429 GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHE 484 (513)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 484 (513)
..+.+.........+..|..||||..|++...+|.|.+|++.+-++...+..++
T Consensus 218 --~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 218 --SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred --ceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 111111222245678999999999999999999999999999887776665443
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=1.7e-09 Score=92.90 Aligned_cols=285 Identities=15% Similarity=0.218 Sum_probs=171.3
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccC------------CccEEEEEEcCCCC-
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMH------------DETVLCIEFSRDSE- 277 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~~~~~~- 277 (513)
.....|+++.|...|.|||+|...|.| +++....... .. +.....+++| ...|..+.|..++.
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRV-vlfer~~s~~-ce--ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r 99 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRV-VLFEREKSYG-CE--YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceE-EEeecccccc-cc--hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence 445679999999999999999999999 5887554320 11 1111123333 34688888887543
Q ss_pred -EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEE--------ee-CCCcEEEEecCCCceee-Eec
Q 010324 278 -MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILS--------TS-FDSTARIHGLKSGKLLK-EFR 346 (513)
Q Consensus 278 -~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--------~~-~dg~i~i~d~~~~~~~~-~~~ 346 (513)
.++..+.|.+|++|.+........-...-...+ -+|-+.-+.+ .+ .|..|... +.+ .-.
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~----~~~~~g~~~s~~~l~lprls~hd~iiaa~------p~rvyaN 169 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSF----HSPMGGPLTSTKELLLPRLSEHDEIIAAK------PCRVYAN 169 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhcccccccc----ccccCCCcCCHHHhhcccccccceEEEec------cceeccc
Confidence 556667899999999875432111110011111 1111110100 01 11111111 111 124
Q ss_pred ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCC--CCCCCCceeeEEEecCCCCCeEEEEcCCCcEEE
Q 010324 347 GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP--PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYI 424 (513)
Q Consensus 347 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i 424 (513)
.|...++++.++.|...++++ .|-.|.+|++.-...-..+.... .......-|++..|+|.....+..++..|.|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 688889999999998877765 46779999887543222221111 111123457888999998899999999999999
Q ss_pred EEccCe-----EEEEeec---C------ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc-eeeEeeecccC----
Q 010324 425 MTLQGQ-----VVKSFSS---G------KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG-KLEHLMKVHEK---- 485 (513)
Q Consensus 425 ~d~~~~-----~~~~~~~---~------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~---- 485 (513)
-|++.. ..+.+.. + ..-...+..+.|+++|+++++-+ =-+|.+||.+.. .++.+++-|..
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHH
Confidence 999822 1111111 0 01124567889999999998776 468999999764 46666655521
Q ss_pred --------Ce---EEEEEcCCCCEEEEEECCCeEEec
Q 010324 486 --------DV---IGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 486 --------~v---~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
.| ..+.|+.|...+.+|+.....-||
T Consensus 328 l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred HHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 22 246788787888888776655443
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.12 E-value=1.2e-09 Score=91.38 Aligned_cols=262 Identities=16% Similarity=0.196 Sum_probs=145.9
Q ss_pred eeEEEECCCCCEEEEEecCCeEEEEEeccccccccccc----cccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 216 AECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQ----YQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 216 v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
++.+.|+-+ ..|+++..++.+. ......+......+ ..+...+..|.++-.+-+.+-.++.++++..||.+.+.
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~s-s~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQII-SLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechhh-heeecccchhhee-eeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 555555543 3566666666653 44443333221111 11111222233322222233345679999999999999
Q ss_pred EcCCcce-eeecccccccCeEEEEEccCCCEEEEeeC-----CCcEEEEecCCCceeeEecccccceeEEEEccC-CCEE
Q 010324 292 RIRSGQC-LRRLERAHSEGVTSLVFSRDGSQILSTSF-----DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND-GSRV 364 (513)
Q Consensus 292 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l 364 (513)
+.+.-.. ..++...|. .-.+.+....++.+.++.. -+..+.|+++..+....-......|++++-+|. .+.+
T Consensus 117 s~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v 195 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLV 195 (319)
T ss_pred echHHHhhhhhcccccc-cccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEE
Confidence 9765211 111111111 1122233334555544431 234566666543332222222334999999984 4567
Q ss_pred EEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCc
Q 010324 365 VTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGD 444 (513)
Q Consensus 365 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 444 (513)
++|+.||.+.+||.++..... ..+..|+.+++.+.|+|.++..+++++.||.+..||..+..+.
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~-----S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~----------- 259 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPV-----SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS----------- 259 (319)
T ss_pred EEecCCCeEEEEEcccccchH-----HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE-----------
Confidence 788899999999999874322 2234788999999999999999999999999999998763322
Q ss_pred EEEEEECCCCCEEEEEecCceEEEEECC---Cc--eeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 445 FVAACVSPKGEWIYCVGEDRNLYCFSHQ---SG--KLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 445 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~---~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
++++ ...+..|=-. .. +....+......|+++.. .|..|++|++-+.|++++
T Consensus 260 -----i~~~---------~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 -----ISNQ---------ASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred -----ecCc---------cccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 1111 1222233110 00 011122223345666555 578899999988888865
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.12 E-value=1.3e-07 Score=84.71 Aligned_cols=218 Identities=19% Similarity=0.228 Sum_probs=139.7
Q ss_pred CCcEEEEEcCCcceeeeccccc-ccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCE
Q 010324 285 DGKIKVWRIRSGQCLRRLERAH-SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSR 363 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 363 (513)
+|+|..||..+|+.+.+..... .....+. ..+++..+++++.++.|+.||..+|+.+.++... ..+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eecccc
Confidence 6889999999999988875321 1222211 3335678888899999999999999998887752 2222222 234556
Q ss_pred EEEEeCCCcEEEEeCCCCceeEee-cCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccC
Q 010324 364 VVTASSDCTVKVWDLKSTDCLQTF-KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKRE 441 (513)
Q Consensus 364 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~ 441 (513)
+++++.++.+..+|..+|+..... ........ ........+. ...++++..++.+..+|.. |+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccc-cccccCceEe---cCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 777778889999999999998874 32211111 1112222222 3778888889999999987 7776666553322
Q ss_pred C-Cc------EEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 442 G-GD------FVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 442 ~-~~------~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
. .. ...-....++ .++.++.+|.+..+|..+++.+.... ...+..+ ..+++..++.++.++.|..||+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence 1 11 1222333344 78888878864444999999765333 2233331 3457778888889999999985
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=5.3e-09 Score=101.16 Aligned_cols=188 Identities=16% Similarity=0.249 Sum_probs=137.7
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 292 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd 292 (513)
.+.++|++++ ++++|.|+.+|.+. +.+.+... ... ..|... ..+|.++++|+.||+|.|-.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~-~~~~~~~~-~~~---------~~~s~~------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVY-LTTCQGNP-KTN---------FDHSSS------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEE-EEecCCcc-ccc---------cccccc------ccCCceEEEecCCCcEEEee
Confidence 4567888886 67999999999996 88765432 111 114333 56899999999999999999
Q ss_pred cCCcceeeecccccccCeEEEEEccC-----CCEEEEeeCCCcEEEEecC--CCceeeEecccccceeEEEEccCCCEEE
Q 010324 293 IRSGQCLRRLERAHSEGVTSLVFSRD-----GSQILSTSFDSTARIHGLK--SGKLLKEFRGHSSYVNDAIFTNDGSRVV 365 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 365 (513)
+.+++...++. ...++.+++++|+ .+.+++|+.-| +.++.-+ ..+....+....++|.++.|. |++++
T Consensus 100 l~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIA 174 (846)
T KOG2066|consen 100 LFTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIA 174 (846)
T ss_pred ccCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEE
Confidence 99888777764 6789999999997 56899999888 7776432 111111345567899999997 67888
Q ss_pred EEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc
Q 010324 366 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 428 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~ 428 (513)
-++.+| |++||+.+++.+..++++......+.....+.|.+.. .++.| ...+|.+..++
T Consensus 175 Wand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 175 WANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIG-WGDSVKICSIK 233 (846)
T ss_pred EecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC--eEEEe-cCCeEEEEEEe
Confidence 888887 9999999999888888776555555556677887753 44444 34456666665
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.07 E-value=1.1e-07 Score=85.23 Aligned_cols=228 Identities=18% Similarity=0.228 Sum_probs=141.0
Q ss_pred CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEE
Q 010324 234 DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSL 313 (513)
Q Consensus 234 dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 313 (513)
+|.|. .||..+|+.+....... ... ...+. ..+++..+++++.++.+..||..+|+.+.++.. ...+...
T Consensus 2 ~g~l~-~~d~~tG~~~W~~~~~~-----~~~-~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~ 71 (238)
T PF13360_consen 2 DGTLS-ALDPRTGKELWSYDLGP-----GIG-GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGA 71 (238)
T ss_dssp TSEEE-EEETTTTEEEEEEECSS-----SCS-SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSG
T ss_pred CCEEE-EEECCCCCEEEEEECCC-----CCC-Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccce
Confidence 56774 78877777766554311 011 22211 222566788888999999999999998877763 2221111
Q ss_pred EEccCCCEEEEeeCCCcEEEEecCCCceeeEe-cccc---cceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecC
Q 010324 314 VFSRDGSQILSTSFDSTARIHGLKSGKLLKEF-RGHS---SYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP 389 (513)
Q Consensus 314 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 389 (513)
. ..++..+++++.++.++.+|..+|+.+... .... ..........++..++++..++.|..+|+++|+.+.....
T Consensus 72 ~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 72 P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 1 224567777878899999999999998884 3221 1112223333478899999899999999999999887765
Q ss_pred CCCCCCCC----ceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCce
Q 010324 390 PPPLRGGD----ASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRN 465 (513)
Q Consensus 390 ~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 465 (513)
........ ..+..-.... + ..+++++.++.+..+|....... +.... .. ... ....++..|++++.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~~~g~~~~~d~~tg~~~-w~~~~-~~--~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVIS-D-GRVYVSSGDGRVVAVDLATGEKL-WSKPI-SG--IYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp STT-SS--EEEETTEEEEEECC-T-TEEEEECCTSSEEEEETTTTEEE-EEECS-S---ECE-CEECCCTEEEEEETTTE
T ss_pred CCCCCCcceeeecccccceEEE-C-CEEEEEcCCCeEEEEECCCCCEE-EEecC-CC--ccC-CceeeCCEEEEEeCCCE
Confidence 32111000 0111222222 2 37777777776444488844322 22211 11 212 24567888888889999
Q ss_pred EEEEECCCceeeEe
Q 010324 466 LYCFSHQSGKLEHL 479 (513)
Q Consensus 466 i~iwd~~~~~~~~~ 479 (513)
|++||+.+|+.+..
T Consensus 224 l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 224 LYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEEECCCCCEEeE
Confidence 99999999987653
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.07 E-value=4.5e-08 Score=82.59 Aligned_cols=223 Identities=10% Similarity=0.051 Sum_probs=143.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCceeeEeccccccee
Q 010324 275 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVN 353 (513)
Q Consensus 275 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 353 (513)
.-.+||.|+..|...+|...+.+....+-..+...|+-+.=.. ...-+..++.|.++++.++.-+..........-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 3458999999999999998876543333223333332221111 223466778888888888754432222211112388
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCce--eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-
Q 010324 354 DAIFTNDGSRVVTASSDCTVKVWDLKSTDC--LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ- 430 (513)
Q Consensus 354 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~- 430 (513)
++++++|++++++.+....|..|.+..... ...... .....-.+..|+..+ ..++++..||.+.+||++..
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a-----~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA-----PTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec-----ccCCCceeeeeccCc-ceEEEEecCCcEEEEEecccc
Confidence 999999999999999999999998875432 221111 122334566777766 88999999999999999832
Q ss_pred -EEE-EeecCccCCCcEEEEEECCCCC--EEEEEecCceEEEEECCCceeeEeeeccc--------CCeEEEEEcCCCCE
Q 010324 431 -VVK-SFSSGKREGGDFVAACVSPKGE--WIYCVGEDRNLYCFSHQSGKLEHLMKVHE--------KDVIGVTHHPHRNL 498 (513)
Q Consensus 431 -~~~-~~~~~~~~~~~~~~~~~s~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--------~~v~~~~~~p~~~~ 498 (513)
... .......+.+.+..+.|++.|. +|+..-.-+.+.+.|+++++..+.+.... ..|..-.|+.++..
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s 316 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES 316 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence 221 1222334778899999998663 56666677889999999987655443222 23666777766554
Q ss_pred EEEEE
Q 010324 499 LATYG 503 (513)
Q Consensus 499 l~s~~ 503 (513)
+.+.+
T Consensus 317 ~~v~~ 321 (344)
T KOG4532|consen 317 NDVKN 321 (344)
T ss_pred ccccc
Confidence 44443
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.06 E-value=5.5e-07 Score=80.89 Aligned_cols=222 Identities=16% Similarity=0.171 Sum_probs=146.6
Q ss_pred eEEEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEc-CCCCEEEEEeCCCcEEEEEcC
Q 010324 217 ECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS-RDSEMLASGSQDGKIKVWRIR 294 (513)
Q Consensus 217 ~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~~~dg~i~vwd~~ 294 (513)
.+..|.+ +|.++++....+.|. .|+..++.... + .......+++. +++ .++.+... .+.++|..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~-~~~~~~~~~~~-~----------~~~~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~ 68 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIY-RVDPDTGEVEV-I----------DLPGPNGMAFDRPDG-RLYVADSG-GIAVVDPD 68 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEE-EEETTTTEEEE-E----------ESSSEEEEEEECTTS-EEEEEETT-CEEEEETT
T ss_pred cceEEECCCCEEEEEEcCCCEEE-EEECCCCeEEE-E----------ecCCCceEEEEccCC-EEEEEEcC-ceEEEecC
Confidence 3678998 777777877889894 89988765432 1 11227777887 565 45555554 45666988
Q ss_pred Ccceeeeccc---c-cccCeEEEEEccCCCEEEEeeCC--------CcEEEEecCCCceeeEecccccceeEEEEccCCC
Q 010324 295 SGQCLRRLER---A-HSEGVTSLVFSRDGSQILSTSFD--------STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 295 ~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 362 (513)
+++....... . .....+.+++.|+|+..++.... |.|..++.. ++..... ..-...+.++|+|+++
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGK 146 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSS
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcch
Confidence 8865433331 1 34568899999999977765543 557777776 4433333 3345678999999998
Q ss_pred EEE-EEeCCCcEEEEeCCCCce-e---EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeec
Q 010324 363 RVV-TASSDCTVKVWDLKSTDC-L---QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSS 437 (513)
Q Consensus 363 ~l~-~~~~dg~i~iwd~~~~~~-~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 437 (513)
.|+ +-+..+.|..|++..... + ..+... ....+....+++..++ ++.++....+.|.+++.+|+.+..+..
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDF---PGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE----SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEEEEEE-
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEc---CCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCCccEEEEEcC
Confidence 765 556778899999864322 1 122111 1222457889998877 778888889999999999988887776
Q ss_pred CccCCCcEEEEEE-CCCCCEEEEEe
Q 010324 438 GKREGGDFVAACV-SPKGEWIYCVG 461 (513)
Q Consensus 438 ~~~~~~~~~~~~~-s~~~~~l~~g~ 461 (513)
.. ..+++++| .++.+.|+..+
T Consensus 223 p~---~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 223 PV---PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SS---SSEEEEEEESTTSSEEEEEE
T ss_pred CC---CCEEEEEEECCCCCEEEEEe
Confidence 52 36889999 57777776554
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.06 E-value=2.5e-07 Score=79.42 Aligned_cols=198 Identities=18% Similarity=0.230 Sum_probs=128.2
Q ss_pred EEEccCCCEEEEeeCCCcEEEEecCCC--ceeeEec---ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEee
Q 010324 313 LVFSRDGSQILSTSFDSTARIHGLKSG--KLLKEFR---GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTF 387 (513)
Q Consensus 313 ~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 387 (513)
++.+.+|+.||+.- |..|.+-..++. ..+.+.+ .....-..++|+||+..||.+...|+|++||+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 56677887776654 677777655433 2222222 2233467899999999999999999999999875 445555
Q ss_pred cCCCCCCC-CCceeeEEEecCCC-----CCeEEEEcCCCcEEEEEcc------CeEEEEeecCccCCCcEEEEEECCCCC
Q 010324 388 KPPPPLRG-GDASVNSVHLFPKN-----PDHIVVCNKTSSIYIMTLQ------GQVVKSFSSGKREGGDFVAACVSPKGE 455 (513)
Q Consensus 388 ~~~~~~~~-~~~~v~~~~~~~~~-----~~~l~~~~~~~~i~i~d~~------~~~~~~~~~~~~~~~~~~~~~~s~~~~ 455 (513)
.+.....+ ....|..+.|.+.. ...+++-+..|.++-|-+. ......+.........+.+++++|.-+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 55432222 23455666665433 3456777777777666652 223344444444456789999999999
Q ss_pred EEEEEec----Cc-------eEEEEECCCceeeE---------------------ee--------ecccCCeEEEEEcCC
Q 010324 456 WIYCVGE----DR-------NLYCFSHQSGKLEH---------------------LM--------KVHEKDVIGVTHHPH 495 (513)
Q Consensus 456 ~l~~g~~----dg-------~i~iwd~~~~~~~~---------------------~~--------~~h~~~v~~~~~~p~ 495 (513)
.|++|+. ++ -+..|.+-++.+-. .+ ......|..|..+||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 8888772 11 35666554331110 00 012456889999999
Q ss_pred CCEEEEEECCCeEEecc
Q 010324 496 RNLLATYGEDCTMKLWK 512 (513)
Q Consensus 496 ~~~l~s~~~dg~i~iWd 512 (513)
|..||+...+|.|.+|+
T Consensus 241 g~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWE 257 (282)
T ss_pred CCEEEEEEcCCeEEEEe
Confidence 99999999999999997
No 300
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.05 E-value=1.5e-07 Score=85.87 Aligned_cols=223 Identities=18% Similarity=0.224 Sum_probs=155.9
Q ss_pred CCCCCEEEEEecCCeEEEEEeccccccccc-cccccc--cccccCCccEEEEE-EcC-CCCEEEEEeCCCcEEEEEcCCc
Q 010324 222 SPDGQFLVSCSFDGFIEVVWDYLSGKLKKD-LQYQAD--ETFMMHDETVLCIE-FSR-DSEMLASGSQDGKIKVWRIRSG 296 (513)
Q Consensus 222 s~~g~~la~g~~dg~i~~iwd~~~~~~~~~-~~~~~~--~~~~~h~~~v~~l~-~~~-~~~~l~s~~~dg~i~vwd~~~~ 296 (513)
+.||+.++.. ..|.| +++|..+..+.+. +..+.. ........+..-+. |++ +|++++..| .|...+.+...+
T Consensus 275 nsDGkrIvFq-~~GdI-ylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQ-NAGDI-YLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEe-cCCcE-EEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCC
Confidence 4567776654 35678 5999887654321 110100 00000112222222 455 788888887 567888886666
Q ss_pred ceeeecccccccCeEEEEEccCCCEEEEeeCCC-cEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEE
Q 010324 297 QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS-TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV 375 (513)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 375 (513)
-.++. ++...|.-..+..+++-++.|..|| .+-++|.++++ +..+...-+.|.++..+++|++++++.....|.+
T Consensus 352 ~~iqv---~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 352 YSIQV---GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred eeEEc---CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 54433 5677799999988888999999999 89999987665 4555566778999999999999999999999999
Q ss_pred EeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC----cEEEEEccCeEEEEeecCccCCCcEEEEEEC
Q 010324 376 WDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS----SIYIMTLQGQVVKSFSSGKREGGDFVAACVS 451 (513)
Q Consensus 376 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s 451 (513)
.|+.++.....-+ ...+-|+.+.|+|++ .+++-+--+| .|+++|+.+..+-....... .-.+-+|.
T Consensus 428 ididngnv~~idk------S~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta---~DfsPaFD 497 (668)
T COG4946 428 IDIDNGNVRLIDK------SEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA---YDFSPAFD 497 (668)
T ss_pred EEecCCCeeEecc------cccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeEEEecCCcc---cccCcccC
Confidence 9999987543322 456789999999987 7777766554 68999999766555554332 23467889
Q ss_pred CCCCEEEEEe
Q 010324 452 PKGEWIYCVG 461 (513)
Q Consensus 452 ~~~~~l~~g~ 461 (513)
|+|++|+.-+
T Consensus 498 ~d~ryLYfLs 507 (668)
T COG4946 498 PDGRYLYFLS 507 (668)
T ss_pred CCCcEEEEEe
Confidence 9999887655
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.05 E-value=3.8e-09 Score=103.37 Aligned_cols=183 Identities=16% Similarity=0.230 Sum_probs=142.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeE
Q 010324 275 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVND 354 (513)
Q Consensus 275 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 354 (513)
++..++.|+....+..+|+.+.+..+... -..+.|.-++. +++.+++|...|+|.+-|.++.+.++++..|.+.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN-VSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee-ccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 44567778777889999999888776664 33445666665 5889999999999999999999999999999999976
Q ss_pred EEEccCCCEEEEEeC---------CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEE
Q 010324 355 AIFTNDGSRVVTASS---------DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM 425 (513)
Q Consensus 355 ~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~ 425 (513)
+.. .|+.|++++. |..|+|||+|..+.+..+..+. ...-+.|+|.-...+++++..|...+.
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-------~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-------GPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc-------CchhhhhcccccceEEEEecccceeec
Confidence 554 5889999885 5678999999877555443322 235567888888899999999999999
Q ss_pred Ec---cCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 426 TL---QGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 426 d~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
|. .......... ...+..+..+++|++|+.++.|..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v-~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMV-NPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEE-ccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 94 3332222222 22345588999999999999999999999997
No 302
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.02 E-value=2.1e-09 Score=102.72 Aligned_cols=245 Identities=17% Similarity=0.261 Sum_probs=159.9
Q ss_pred cCceeEEEECCCC---CEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC-CCEEEEEeCCCcE
Q 010324 213 KSHAECARFSPDG---QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-SEMLASGSQDGKI 288 (513)
Q Consensus 213 ~~~v~~~~~s~~g---~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i 288 (513)
.-.|-.+.|+|.. .++++.+....| +|++....-.. + ...+.||...|+.+-|+|. ...+++++.|..+
T Consensus 67 pw~vad~qws~h~a~~~wiVsts~qkai--iwnlA~ss~~a-I----ef~lhghsraitd~n~~~q~pdVlatcsvdt~v 139 (1081)
T KOG0309|consen 67 PWQVADVQWSPHPAKPYWIVSTSNQKAI--IWNLAKSSSNA-I----EFVLHGHSRAITDINFNPQHPDVLATCSVDTYV 139 (1081)
T ss_pred cchhcceecccCCCCceeEEecCcchhh--hhhhhcCCccc-e----EEEEecCccceeccccCCCCCcceeeccccccc
Confidence 3346667788743 345555544554 89986533211 1 1245679999999999994 4589999999999
Q ss_pred EEEEcCCcc-eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC-ceeeEecccccceeEEEEcc-CCCEEE
Q 010324 289 KVWRIRSGQ-CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTN-DGSRVV 365 (513)
Q Consensus 289 ~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~ 365 (513)
..||+++.. ++..+. .-......++|+-....+.+.+..+.|.+||.+.| .++..+++|...|+.++|.. ....+.
T Consensus 140 h~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~ 218 (1081)
T KOG0309|consen 140 HAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIM 218 (1081)
T ss_pred eeeeccCCCcceeeee-cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhc
Confidence 999998765 344443 34556778999986666777777889999999876 56788888988999999875 334688
Q ss_pred EEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc-EEEEEcc-----------CeEEE
Q 010324 366 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS-IYIMTLQ-----------GQVVK 433 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~-i~i~d~~-----------~~~~~ 433 (513)
+.+.||+|+.||......... .......++..-++.|.+..+++.-...+. +.+++-+ ...+.
T Consensus 219 s~~~d~tvkfw~y~kSt~e~~-----~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh 293 (1081)
T KOG0309|consen 219 SSSNDGTVKFWDYSKSTTESK-----RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVH 293 (1081)
T ss_pred ccCCCCceeeecccccccccc-----eeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCccee
Confidence 999999999999875432111 112345567777777777555544433333 3333222 11233
Q ss_pred EeecCccCCCcEEEEEEC----------CCCCEEEEEecCceEEEEECCC
Q 010324 434 SFSSGKREGGDFVAACVS----------PKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 434 ~~~~~~~~~~~~~~~~~s----------~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
.+.. |...|...-|- ...-.|++-+.|..+++|-+.+
T Consensus 294 ~F~G---H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 294 TFVG---HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eecC---cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 3332 22233222221 1123688999999999998764
No 303
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.02 E-value=4e-07 Score=87.91 Aligned_cols=272 Identities=10% Similarity=0.096 Sum_probs=161.4
Q ss_pred CCCEEEEEecCCeEEEEEeccccccccccccccccccccCC--ccEE-EEEEcCCCCEEEEEeCCCcEEEEEcCCcceee
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD--ETVL-CIEFSRDSEMLASGSQDGKIKVWRIRSGQCLR 300 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~--~~v~-~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 300 (513)
.+..+++++.+|.+. -+|..+|+............+.... ..+. .+.. ++..++.++.+|.+..+|..+|+.+.
T Consensus 68 ~~~~vy~~~~~g~l~-ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 68 AYNKVYAADRAGLVK-ALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAW 144 (394)
T ss_pred ECCEEEEECCCCeEE-EEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence 466788888888884 8898888877665432211110000 0110 1111 35567788889999999999999888
Q ss_pred ecccccccCeEE-EEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccce-----eEEEEccCCCEEEEEeCCCcEE
Q 010324 301 RLERAHSEGVTS-LVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV-----NDAIFTNDGSRVVTASSDCTVK 374 (513)
Q Consensus 301 ~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~ 374 (513)
+... ...+.+ ... .+..+++++.+|.+..+|.++|+.+.......... .+... .+..++.++.+|.+.
T Consensus 145 ~~~~--~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 145 QTKV--AGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVS 218 (394)
T ss_pred cccC--CCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEE
Confidence 7752 222221 112 24567778889999999999999988776431111 11111 133577788899999
Q ss_pred EEeCCCCceeEeecCCCCCCCCC-ceeeEEEecCC-CCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEEC
Q 010324 375 VWDLKSTDCLQTFKPPPPLRGGD-ASVNSVHLFPK-NPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVS 451 (513)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~-~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s 451 (513)
.+|..+|+............... .....+...|- ....+++++.++.++.+|.. ++......... ...+ .
T Consensus 219 a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-----~~~~--~ 291 (394)
T PRK11138 219 AVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-----VNDF--A 291 (394)
T ss_pred EEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-----ccCc--E
Confidence 99999998766543221110000 00011111110 12567777788999999987 55444332211 1111 1
Q ss_pred CCCCEEEEEecCceEEEEECCCceeeEeeecccC-CeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 452 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEK-DVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 452 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
..+..++.++.+|.++.+|..+|+.+.....-.. ...+... .+..++.++.||.|...|+
T Consensus 292 ~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 292 VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence 2467888889999999999999987654432111 1112222 2456777888888877664
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.96 E-value=2.7e-08 Score=83.59 Aligned_cols=160 Identities=12% Similarity=0.119 Sum_probs=102.9
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccc-cccccccccccccCCccEEEEEEcCCCCEEEEEe-----C
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLK-KDLQYQADETFMMHDETVLCIEFSRDSEMLASGS-----Q 284 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-----~ 284 (513)
.|..+-.+-+.+-.++.+++|..||.+. +.+.+.-... ..+.. .|. .-.+.+....++.+.++. .
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~-v~s~~~~~~~~~~i~~-------~~~-~~as~~~~~~~~~i~s~~~g~~n~ 157 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLA-VFSTDKDLALMSRIPS-------IHS-GSASRKICRHGNSILSGGCGNWNA 157 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEE-EEechHHHhhhhhccc-------ccc-cccccceeecccEEecCCcceEee
Confidence 4444445555566678899999999995 8887652111 11100 011 112222333445444432 1
Q ss_pred CCcEEEEEcCCcceeeecccccccCeEEEEEccC-CCEEEEeeCCCcEEEEecCCCc-eeeEecccccceeEEEEcc-CC
Q 010324 285 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGK-LLKEFRGHSSYVNDAIFTN-DG 361 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~-~~ 361 (513)
-+..+.|+++..+....-. .....|++++-+|. ...+++|+.||.+.+||.+... +...+..|+.++..+.|+| ++
T Consensus 158 ~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred ccceeeecccccccccccc-cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence 2345666665433222222 12334999999995 4566788999999999998874 3455678999999999999 56
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 010324 362 SRVVTASSDCTVKVWDLKS 380 (513)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~ 380 (513)
..|++++.||.+-.||..+
T Consensus 237 ~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hheeEecCCCcEEEEcCCC
Confidence 7899999999999999764
No 305
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.95 E-value=2.3e-06 Score=72.31 Aligned_cols=257 Identities=14% Similarity=0.128 Sum_probs=147.0
Q ss_pred CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeccc
Q 010324 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER 304 (513)
Q Consensus 225 g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 304 (513)
..+++.|+..+.+. --|..+|+...+... ...|-+-+.- -|++++.|+..|.+++.+..+|.....+..
T Consensus 23 kT~v~igSHs~~~~-avd~~sG~~~We~il---------g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVI-AVDPQSGNLIWEAIL---------GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred ceEEEEecCCceEE-EecCCCCcEEeehhh---------CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 45677777777774 777777776654332 2333333322 477899999999999999999988777752
Q ss_pred ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCc--
Q 010324 305 AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD-- 382 (513)
Q Consensus 305 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-- 382 (513)
...-.+ .....+++..+..|+.|++.+..|.++..++.+.+...+...+-+..|-...|..+...|.+.--......
T Consensus 92 ~~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~ 170 (354)
T KOG4649|consen 92 LETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSST 170 (354)
T ss_pred hhhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcc
Confidence 222222 23456689999999999999999999999998877665555566677733345555555655544444331
Q ss_pred eeEeecCCCCCCCCCceeeE--EEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEE-EEEEC-CCCCEEE
Q 010324 383 CLQTFKPPPPLRGGDASVNS--VHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFV-AACVS-PKGEWIY 458 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~s-~~~~~l~ 458 (513)
....... .+++.+ ++. ...+..+.-||.+.-++-.|..+.++.. .+++. .-+-+ |..+.+.
T Consensus 171 ~~w~~~~-------~~PiF~splcv----~~sv~i~~VdG~l~~f~~sG~qvwr~~t----~GpIf~~Pc~s~Ps~q~i~ 235 (354)
T KOG4649|consen 171 EFWAATR-------FGPIFASPLCV----GSSVIITTVDGVLTSFDESGRQVWRPAT----KGPIFMEPCESRPSCQQIS 235 (354)
T ss_pred eehhhhc-------CCccccCceec----cceEEEEEeccEEEEEcCCCcEEEeecC----CCceecccccCCCcceEEE
Confidence 1111111 111111 111 1345556677888888866766665443 22222 22233 4444555
Q ss_pred EEecCceEE--------EEECCCceeeEeeecccCCeEEEEEcC----CCCEEEEEECCCeEEec
Q 010324 459 CVGEDRNLY--------CFSHQSGKLEHLMKVHEKDVIGVTHHP----HRNLLATYGEDCTMKLW 511 (513)
Q Consensus 459 ~g~~dg~i~--------iwd~~~~~~~~~~~~h~~~v~~~~~~p----~~~~l~s~~~dg~i~iW 511 (513)
.+.++-... +|..++|.....+-. +-..++++. ...++..++.||++.|-
T Consensus 236 ~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~---p~l~F~~h~~~~S~~~ll~~~s~dgkv~il 297 (354)
T KOG4649|consen 236 LENENCFCAPLPIAGHLLWATQSGTTLHVYLS---PKLRFDLHSPGISYPKLLRRSSGDGKVMIL 297 (354)
T ss_pred EecCCeEEEeccccceEEEEecCCcEEEEEeC---cccceeccCCCCcchhhhhhhcCCCcEEEE
Confidence 555444333 444444432222211 111222221 13466677788887663
No 306
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=4.9e-08 Score=94.99 Aligned_cols=234 Identities=12% Similarity=0.201 Sum_probs=157.3
Q ss_pred cEEEEEEcCCCCEEEEEeC----CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce
Q 010324 266 TVLCIEFSRDSEMLASGSQ----DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 341 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 341 (513)
.-+-.+|+|...++++++. .|+|.||- ++|++..... .+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 3344679999999988863 58899985 7888665554 344567899999988889998999999999877776
Q ss_pred eeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeE----------------eecCCCC-----------CC
Q 010324 342 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ----------------TFKPPPP-----------LR 394 (513)
Q Consensus 342 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------~~~~~~~-----------~~ 394 (513)
-.....|+.+|..+.|+++|..++++..-|.+.+|.......+. .+..+.. ..
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVt 173 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVT 173 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhcc
Confidence 66667799999999999999999999999999999776221111 1111000 01
Q ss_pred CCCceee-EEEe-------------cCCCCCeEEEEcCCCcEEEEEccCeEEEEeecC----------------------
Q 010324 395 GGDASVN-SVHL-------------FPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSG---------------------- 438 (513)
Q Consensus 395 ~~~~~v~-~~~~-------------~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---------------------- 438 (513)
+.+..+. -..| .|++ ..++.++.+|+|+-.|-.|.........
T Consensus 174 gDe~alD~~fnwk~~~a~rs~~ksgv~~g-~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr 252 (1416)
T KOG3617|consen 174 GDESALDEPFNWKESLAERSDEKSGVPKG-TEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLR 252 (1416)
T ss_pred CchhhhcccccCccchhhccccccCCCCC-cEEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhcccceEEEEeeece
Confidence 1111111 0111 1222 6788888899988888554332111100
Q ss_pred -----------------------------------------------ccCCCcEEEEEECCCCCEEEEEecCceEEEEEC
Q 010324 439 -----------------------------------------------KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 439 -----------------------------------------------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 471 (513)
...+..++++|++..+..++.|...|.+.+|--
T Consensus 253 ~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~ 332 (1416)
T KOG3617|consen 253 DCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLD 332 (1416)
T ss_pred eeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeee
Confidence 011245789999999999999999999999964
Q ss_pred CCc-------eeeEeeec---ccCCeEEEEEcCCCCEEEEEE
Q 010324 472 QSG-------KLEHLMKV---HEKDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 472 ~~~-------~~~~~~~~---h~~~v~~~~~~p~~~~l~s~~ 503 (513)
... .-...+.+ -.+.|+.+.|.|-.+.++.-+
T Consensus 333 v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 333 VNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred cCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence 322 22233333 246799999999665555443
No 307
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=4.2e-07 Score=84.61 Aligned_cols=253 Identities=14% Similarity=0.123 Sum_probs=161.6
Q ss_pred ccccccCcccceeeeec--cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEE
Q 010324 194 QDVEDMYPTTLSHTIKF--GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIE 271 (513)
Q Consensus 194 ~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 271 (513)
..+||.......+.+.. +....-.-..||.|++|+|--..|+ |. ||+..+-.+...-.. .-..|....
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-is-IyEtpsf~lld~Ksl--------ki~gIr~Fs 353 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-IS-IYETPSFMLLDKKSL--------KISGIRDFS 353 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce-EE-EEecCceeeeccccc--------CCccccCcc
Confidence 45677777777766654 2223334578999999999888765 53 888765333221111 346788999
Q ss_pred EcCCCCEEEEEeCC-----CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeC----------CCcEEEEec
Q 010324 272 FSRDSEMLASGSQD-----GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF----------DSTARIHGL 336 (513)
Q Consensus 272 ~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~ 336 (513)
|+|.+..||.-... ..+.+-.+.+++.+++-. -+.-.=..+.|-.+|.+|+.--. -..+.|+.+
T Consensus 354 wsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n-lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 354 WSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN-LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred cCCCcceEEEEcccccCCcceEEEEecCccceeeecc-ceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 99999988865432 367788888888777665 34444456788889999886321 123556666
Q ss_pred CCCceeeEecccccceeEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeE
Q 010324 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS---DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 413 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 413 (513)
+........-.....|...+|-|.|+.+++-+. ..++.+|.+++... ....... -.....+.+.|+|.| .++
T Consensus 433 reKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~--~~~lVk~--~dk~~~N~vfwsPkG-~fv 507 (698)
T KOG2314|consen 433 REKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK--KPSLVKE--LDKKFANTVFWSPKG-RFV 507 (698)
T ss_pred eccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC--chhhhhh--hcccccceEEEcCCC-cEE
Confidence 555433222234567889999999998877654 35688888774211 1111111 123467889999998 555
Q ss_pred EEE---cCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc
Q 010324 414 VVC---NKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR 464 (513)
Q Consensus 414 ~~~---~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 464 (513)
+++ +..|.+.++|.+-...+.... ......+.+.|.|.|+|+++++.-+
T Consensus 508 vva~l~s~~g~l~F~D~~~a~~k~~~~--~eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 508 VVAALVSRRGDLEFYDTDYADLKDTAS--PEHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred EEEEecccccceEEEecchhhhhhccC--ccccccccceECCCCCEEEEeeehh
Confidence 443 457899999988422222211 1123456789999999999998643
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=6.8e-09 Score=90.58 Aligned_cols=172 Identities=20% Similarity=0.387 Sum_probs=125.8
Q ss_pred EEECC--CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCc
Q 010324 219 ARFSP--DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG 296 (513)
Q Consensus 219 ~~~s~--~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~ 296 (513)
++|+- .|-.+++|. +-.+ .+-|+.+|-... |. ..+.|.++.|...++++..|+.+|.|..+|++.+
T Consensus 217 CawSlni~gyhfs~G~-sqqv-~L~nvetg~~qs---------f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~r 284 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGL-SQQV-LLTNVETGHQQS---------FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCR 284 (425)
T ss_pred hhhhhccceeeecccc-ccee-EEEEeecccccc---------cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeec
Confidence 36654 344544444 5555 378888765322 11 5678999999998999999999999999999864
Q ss_pred -----ceeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCce---eeEecccccce--eEEEEccCCCEEE
Q 010324 297 -----QCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKL---LKEFRGHSSYV--NDAIFTNDGSRVV 365 (513)
Q Consensus 297 -----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~l~ 365 (513)
.+...+ -|.+.|+++.... ++.+|++.+.+|.|++||.+.-++ +.++.+|-..- .-+...+....++
T Consensus 285 nqG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~ 362 (425)
T KOG2695|consen 285 NQGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIF 362 (425)
T ss_pred ccCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEE
Confidence 445555 4899999998877 788999999999999999987776 77777774322 2233456667889
Q ss_pred EEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEec
Q 010324 366 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLF 406 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (513)
+++.|...+||.++.+..+.+++.+.. ..+..+.++++.
T Consensus 363 s~GdDcytRiWsl~~ghLl~tipf~~s--~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGHLLCTIPFPYS--ASEVDIPSVAFD 401 (425)
T ss_pred EccCeeEEEEEecccCceeeccCCCCc--cccccccceehh
Confidence 999999999999999999888776543 222234444443
No 309
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.91 E-value=1.7e-06 Score=82.00 Aligned_cols=264 Identities=17% Similarity=0.300 Sum_probs=154.8
Q ss_pred CCCCCEEEEEe---------cCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010324 222 SPDGQFLVSCS---------FDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 292 (513)
Q Consensus 222 s~~g~~la~g~---------~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd 292 (513)
|||+++++... ..+.+ .+||+.+++...... ....+....|||+|+.++... ++.|.+++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y-~i~d~~~~~~~~l~~---------~~~~~~~~~~sP~g~~~~~v~-~~nly~~~ 69 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDY-YIYDIETGEITPLTP---------PPPKLQDAKWSPDGKYIAFVR-DNNLYLRD 69 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEE-EEEETTTTEEEESS----------EETTBSEEEE-SSSTEEEEEE-TTEEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeE-EEEecCCCceEECcC---------CccccccceeecCCCeeEEEe-cCceEEEE
Confidence 68888887742 34566 489988876543222 246788899999999999886 67899999
Q ss_pred cCCcceeeeccccc----------------ccCeEEEEEccCCCEEEEeeCCC---------------------------
Q 010324 293 IRSGQCLRRLERAH----------------SEGVTSLVFSRDGSQILSTSFDS--------------------------- 329 (513)
Q Consensus 293 ~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~dg--------------------------- 329 (513)
..++...+....+. -..-..+-|+||+++|+....|.
T Consensus 70 ~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YP 149 (353)
T PF00930_consen 70 LATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYP 149 (353)
T ss_dssp STTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--
T ss_pred CCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccC
Confidence 87775443222120 11235688999999988754321
Q ss_pred ---------cEEEEecCCCceee-E-e---cccccceeEEEEccCCCEEEEE--eCC---CcEEEEeCCCCceeEeecCC
Q 010324 330 ---------TARIHGLKSGKLLK-E-F---RGHSSYVNDAIFTNDGSRVVTA--SSD---CTVKVWDLKSTDCLQTFKPP 390 (513)
Q Consensus 330 ---------~i~i~d~~~~~~~~-~-~---~~~~~~v~~~~~~~~~~~l~~~--~~d---g~i~iwd~~~~~~~~~~~~~ 390 (513)
.+.++|+.+++... . . ......+..+.|.++++.++.. ..+ ..+.++|..++.........
T Consensus 150 k~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~ 229 (353)
T PF00930_consen 150 KAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET 229 (353)
T ss_dssp BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE
T ss_pred CCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec
Confidence 13445665554321 1 1 1234568889999998844433 332 23677788776654333211
Q ss_pred CCCCCCCceeeEEEec-CCCCCeEEEEcCCCc--EEEEEccCeEEEEeecCccCCCcEE-EEEECCCCCEEE-EEec---
Q 010324 391 PPLRGGDASVNSVHLF-PKNPDHIVVCNKTSS--IYIMTLQGQVVKSFSSGKREGGDFV-AACVSPKGEWIY-CVGE--- 462 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~~-~~~~~~l~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~l~-~g~~--- 462 (513)
.. +--.......+. +++..++.....+|. |++++..+...+.+..+. ..|. .+.++++++.|+ ++..
T Consensus 230 ~~--~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~---~~V~~i~~~d~~~~~iyf~a~~~~p 304 (353)
T PF00930_consen 230 SD--GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD---WEVTSILGWDEDNNRIYFTANGDNP 304 (353)
T ss_dssp SS--SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS---S-EEEEEEEECTSSEEEEEESSGGT
T ss_pred CC--cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc---eeecccceEcCCCCEEEEEecCCCC
Confidence 11 111122344554 777677777777775 555566677666555432 3454 467788877665 4443
Q ss_pred -CceEEEEECC-CceeeEeeecccCCeEEEEEcCCCCEEEEE
Q 010324 463 -DRNLYCFSHQ-SGKLEHLMKVHEKDVIGVTHHPHRNLLATY 502 (513)
Q Consensus 463 -dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 502 (513)
...++.-++. .+.+ ..+....+.-..+.|+|++++++-.
T Consensus 305 ~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 305 GERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp TSBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCCCEEEEE
Confidence 2367777887 4444 4444443333699999999877644
No 310
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.91 E-value=1.5e-06 Score=88.64 Aligned_cols=235 Identities=13% Similarity=0.136 Sum_probs=150.4
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecC----C-
Q 010324 264 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK----S- 338 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~----~- 338 (513)
...|.++.|..++..++.+..+|.|.+-|.++...... ..-...|.+++|+||+..++..+.++++.+-+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeee--eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 46899999999999999999999999998877653322 2356789999999999999999988887764320 0
Q ss_pred ------------------CceeeEeccc---------------------ccceeEEEEccCCCEEEEEe-----CCCcEE
Q 010324 339 ------------------GKLLKEFRGH---------------------SSYVNDAIFTNDGSRVVTAS-----SDCTVK 374 (513)
Q Consensus 339 ------------------~~~~~~~~~~---------------------~~~v~~~~~~~~~~~l~~~~-----~dg~i~ 374 (513)
|+....+++. .+.=+++.|-.||.++++.. ....|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 1111122211 11123589999999998843 237899
Q ss_pred EEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE---cCCCcEEEEEccCeEEEEeecCccC-CCcEEEEEE
Q 010324 375 VWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC---NKTSSIYIMTLQGQVVKSFSSGKRE-GGDFVAACV 450 (513)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~~~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~ 450 (513)
+||-+ |....+-. ...+.-.+++|-|.+ ..+++. ..++.|.++.-+|-.-..+...... ...+..++|
T Consensus 226 V~drE-g~Lns~se------~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSE------PVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred Eeccc-chhhcccC------cccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence 99976 43222211 123345678999966 666554 3456799999887655544443322 334889999
Q ss_pred CCCCCEEEE---EecCceEEEEECCCce--eeEeeecccCCeEEEEEcCCC-CEEEEEECCCeEEe
Q 010324 451 SPKGEWIYC---VGEDRNLYCFSHQSGK--LEHLMKVHEKDVIGVTHHPHR-NLLATYGEDCTMKL 510 (513)
Q Consensus 451 s~~~~~l~~---g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~i 510 (513)
+.++..|++ ......|++|...+-. +.+.+....... +.|+|.. ..+..-..+|...+
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v 361 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLV 361 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEE
Confidence 999999988 4455569999987643 222232222222 6777732 22333334454433
No 311
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=3.8e-08 Score=87.84 Aligned_cols=159 Identities=17% Similarity=0.249 Sum_probs=110.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcce----eeecccccccCeEEEEEccCCCEEEEeeCCC---cEEEEecCC
Q 010324 266 TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC----LRRLERAHSEGVTSLVFSRDGSQILSTSFDS---TARIHGLKS 338 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~ 338 (513)
.+..+..+|.++++|.+..+....++++..... .... .-....+++.|..+......+..-| .+.+|....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 344556778888888888887776776654332 1111 2233345555555555555554444 455555444
Q ss_pred CceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC
Q 010324 339 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK 418 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 418 (513)
+. ...+-+|-+.+++++|+||+++++++..|..|++-.......+..+. .+|..-|..++..++ ..+++++.
T Consensus 142 ~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-----lGH~eFVS~isl~~~--~~LlS~sG 213 (390)
T KOG3914|consen 142 GR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-----LGHKEFVSTISLTDN--YLLLSGSG 213 (390)
T ss_pred cC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc-----cccHhheeeeeeccC--ceeeecCC
Confidence 33 33445799999999999999999999999999998776544444443 478889999999886 56999999
Q ss_pred CCcEEEEEcc-CeEEEE
Q 010324 419 TSSIYIMTLQ-GQVVKS 434 (513)
Q Consensus 419 ~~~i~i~d~~-~~~~~~ 434 (513)
|+++++||+. ++.+..
T Consensus 214 D~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDT 230 (390)
T ss_pred CCcEEEEecccCCcccc
Confidence 9999999998 555433
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.89 E-value=5.8e-09 Score=63.26 Aligned_cols=39 Identities=26% Similarity=0.523 Sum_probs=36.9
Q ss_pred ceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 474 GKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 474 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
++++..+.+|.++|++++|+|++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.5e-07 Score=81.78 Aligned_cols=247 Identities=13% Similarity=0.088 Sum_probs=145.7
Q ss_pred ccccccCCccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCC-CEEEEeeCCCcEEEE
Q 010324 257 DETFMMHDETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIH 334 (513)
Q Consensus 257 ~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~ 334 (513)
.+.+.+|...|.+++|+|..+ ++..++.+..|+|.|+++...+..+. .+ ..+++++|.-|. ++++.|..+|.|.+|
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 345667889999999999766 78889999999999999998888886 44 889999998754 567788889999999
Q ss_pred ecCCCce-eeEecc--cccceeEEEEc------cCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEe
Q 010324 335 GLKSGKL-LKEFRG--HSSYVNDAIFT------NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHL 405 (513)
Q Consensus 335 d~~~~~~-~~~~~~--~~~~v~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
|++..+- +..+.+ ...+|..++.- +.|.+++....+ +..|.+.-.... .. .....+..+...++.+
T Consensus 264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~--~p-~vlele~pG~cismqy 338 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC--LP-CVLELEPPGICISMQY 338 (463)
T ss_pred EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC--CC-cccccCCCcceeeeee
Confidence 9986542 222222 23344444432 234444444332 556655422110 00 0000122445566666
Q ss_pred cCCCCCeEEEEcCCCc------E--EEEEccCeEEEEeecCc---cCCC-cE-EEEEECCCCCEEE-EEecCceEEEEEC
Q 010324 406 FPKNPDHIVVCNKTSS------I--YIMTLQGQVVKSFSSGK---REGG-DF-VAACVSPKGEWIY-CVGEDRNLYCFSH 471 (513)
Q Consensus 406 ~~~~~~~l~~~~~~~~------i--~i~d~~~~~~~~~~~~~---~~~~-~~-~~~~~s~~~~~l~-~g~~dg~i~iwd~ 471 (513)
.+.....+++.-.+.+ + ++-+.+|..+....... .... .- ..+.-.++.++++ +|++.+.+.+||.
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 6655445555443211 1 11112233222211111 0000 00 1122244555554 4446778999999
Q ss_pred CCceeeEeeecccCCeEEEEEcC-CC-CEEEEEECCCeEEecc
Q 010324 472 QSGKLEHLMKVHEKDVIGVTHHP-HR-NLLATYGEDCTMKLWK 512 (513)
Q Consensus 472 ~~~~~~~~~~~h~~~v~~~~~~p-~~-~~l~s~~~dg~i~iWd 512 (513)
.+++.+..+... .+|.+++... ++ .+|+.-. |..++||+
T Consensus 419 ~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 419 HSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred chhheeeecccC-cceeecceeecCCcchhhhee-cceEEEEe
Confidence 999999998754 7888887655 33 4666665 55688875
No 314
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=3.9e-08 Score=85.95 Aligned_cols=171 Identities=20% Similarity=0.296 Sum_probs=126.0
Q ss_pred EEEcc--CCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCc-----eeE
Q 010324 313 LVFSR--DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD-----CLQ 385 (513)
Q Consensus 313 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~ 385 (513)
++|+- .|-. ++.+.+..|-+-|+.+|.. ..|. ..+.|.++.|...++.++.|+.+|.|..+|++.+. +..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 35653 2334 4555677888889877754 3333 56679999999989999999999999999999752 222
Q ss_pred eecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc----CeEEEEeecCccCCCcEEEEEECCCCCEEEEEe
Q 010324 386 TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ----GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG 461 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 461 (513)
.+ -|++.++++.........+++.+.+|.|.+||.+ +..+..+..+.. .....-+-+.+....+++++
T Consensus 294 rl-------yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN-~~a~l~~~v~~eeg~I~s~G 365 (425)
T KOG2695|consen 294 RL-------YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN-LSAYLPAHVKEEEGSIFSVG 365 (425)
T ss_pred EE-------EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc-cccccccccccccceEEEcc
Confidence 22 3678899988887666899999999999999998 233555555432 33344455677888999999
Q ss_pred cCceEEEEECCCceeeEeeeccc----CCeEEEEEcC
Q 010324 462 EDRNLYCFSHQSGKLEHLMKVHE----KDVIGVTHHP 494 (513)
Q Consensus 462 ~dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~p 494 (513)
.|...+||.+++|.++.+++... ..+.+++|..
T Consensus 366 dDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 366 DDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred CeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 99999999999999998876443 2455666643
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=9.1e-07 Score=86.81 Aligned_cols=196 Identities=12% Similarity=0.143 Sum_probs=134.8
Q ss_pred EEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccc-eeEEEEccCCCEEEEEeCCCc-----EEEEeCCCCc-----
Q 010324 314 VFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSY-VNDAIFTNDGSRVVTASSDCT-----VKVWDLKSTD----- 382 (513)
Q Consensus 314 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~----- 382 (513)
+|++.+..++.|+.+|.|.+++- .-+.+..++.+... |..+....+.++|++.+.|+. +++||++.-+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46778889999999999998873 45555788877776 555544445578888887654 8999987431
Q ss_pred -eeEeecCCC-CCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc---CeEEEEeecCccCCCcEEEEEECCCCCEE
Q 010324 383 -CLQTFKPPP-PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ---GQVVKSFSSGKREGGDFVAACVSPKGEWI 457 (513)
Q Consensus 383 -~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 457 (513)
++....... .......++.+++.+.+- ..+++|-.+|.|.++.-+ .+.. .....+..+.+|+.+++..++..+
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCceeeEEecCCcee
Confidence 221111111 112345677888888774 899999999999998654 2222 333334457889999998888875
Q ss_pred EEEecCceEEEEECCCcee-eEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 458 YCVGEDRNLYCFSHQSGKL-EHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 458 ~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+.......|.+|.+....+ ...+..|..+++|..+++....+++++.. .+.+|++
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~s 242 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDS 242 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcC
Confidence 5555567888998874442 45577888899999999866656655544 4777764
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.77 E-value=5e-06 Score=84.90 Aligned_cols=201 Identities=16% Similarity=0.148 Sum_probs=134.5
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI 293 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~ 293 (513)
+.|.++.|..++..++.+..+|.| ++-|..+...... ..-.+.|.+++|+||+..++..+..+++.+-.-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~i-ilvd~et~~~eiv---------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDI-ILVDPETLELEIV---------GNVDNGISAASWSPDEELLALITGRQTLLFMTK 138 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcE-EEEcccccceeee---------eeccCceEEEeecCCCcEEEEEeCCcEEEEEec
Confidence 689999999999999999999999 4777766543211 114678999999999999999988877776542
Q ss_pred ----CCccee-------------------eeccc-----------------c---cccCeEEEEEccCCCEEEEe-----
Q 010324 294 ----RSGQCL-------------------RRLER-----------------A---HSEGVTSLVFSRDGSQILST----- 325 (513)
Q Consensus 294 ----~~~~~~-------------------~~~~~-----------------~---~~~~v~~~~~~~~~~~l~~~----- 325 (513)
-..+.+ ..+.. + ..+.=+++.|--||.++++.
T Consensus 139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence 111111 01110 0 01122458999999999883
Q ss_pred eCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEe---CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeE
Q 010324 326 SFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS---SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNS 402 (513)
Q Consensus 326 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (513)
.....|++||-+ |..-..-....+.-.+++|-|.|..+++.. +|+.|.+|. ++|-....+..+.+ .....+..
T Consensus 219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p--~de~~ve~ 294 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFP--LDEKEVEE 294 (1265)
T ss_pred CCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCc--ccccchhe
Confidence 323789999975 544333333344456789999999888754 466798987 44544444443332 22334899
Q ss_pred EEecCCCCCeEEE---EcCCCcEEEEEccC
Q 010324 403 VHLFPKNPDHIVV---CNKTSSIYIMTLQG 429 (513)
Q Consensus 403 ~~~~~~~~~~l~~---~~~~~~i~i~d~~~ 429 (513)
++|+.++ ..+++ +.....|++|...+
T Consensus 295 L~Wns~s-diLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 295 LAWNSNS-DILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eeecCCC-CceeeeecccccceEEEEEecC
Confidence 9999987 66666 44455699999874
No 317
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.76 E-value=3.3e-06 Score=81.34 Aligned_cols=210 Identities=14% Similarity=0.209 Sum_probs=131.7
Q ss_pred ccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 212 TKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
|...|.--+++..+++++.|+.-|.+ ++|+...+.....- ..+..+.+..+..+++..++|.|+..|.|.++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~l-yl~~R~~~~~~~~~-------~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSV-YLYNRHTGEMRKLK-------NEGATGITCVRSVSSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceE-EEEecCchhhhccc-------ccCccceEEEEEecchhHhhhhhcCCceEEee
Confidence 34445555677789999999999999 59988776644321 11244566777889999999999999999999
Q ss_pred EcCCcce-----eeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc----eeeEecccccceeEEEEccCCC
Q 010324 292 RIRSGQC-----LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK----LLKEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 292 d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~ 362 (513)
-+..+.+ +......|...|++++|++|+..+++|...|.|..-.+.+.. ....+-...+.|..+.... .
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~ 181 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--S 181 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--c
Confidence 8876432 223333578899999999999999999999999998887621 1122223456676666653 2
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC----CCCeEEEEcCCCcEEEEEccCeEEEEee
Q 010324 363 RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK----NPDHIVVCNKTSSIYIMTLQGQVVKSFS 436 (513)
Q Consensus 363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 436 (513)
+|++++.-. -.+++.+.+. +..+.... .....-...+|.|. .+..++++--.+++..-|+.|...++..
T Consensus 182 ~LLVStl~r-~~Lc~tE~et-i~QIG~k~---R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Thq 254 (726)
T KOG3621|consen 182 YLLVSTLTR-CILCQTEAET-ITQIGKKP---RKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTHQ 254 (726)
T ss_pred eehHhhhhh-hheeecchhH-HHHhcCCC---cCCccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEeee
Confidence 344433333 2344554433 11111111 11111234555554 3455666665666666666677666544
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.76 E-value=1.7e-05 Score=67.26 Aligned_cols=258 Identities=13% Similarity=0.113 Sum_probs=140.1
Q ss_pred CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEE-EEEcCCCCEEEEEeCCCcEEEEEcCCcceeeec
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLC-IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 302 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 302 (513)
-|++++.|+..|.+ ++-+..+|.....+.. .+.|.+ ....+++..+..|+.|++.+..|..+..++.+.
T Consensus 62 vgdfVV~GCy~g~l-Yfl~~~tGs~~w~f~~---------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGL-YFLCVKTGSQIWNFVI---------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred ECCEEEEEEccCcE-EEEEecchhheeeeee---------hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 47789999999999 5999999977655442 122222 234678999999999999999999999998887
Q ss_pred ccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc--eeeEecccccceeE--EEEccCCCEEEEEeCCCcEEEEeC
Q 010324 303 ERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK--LLKEFRGHSSYVND--AIFTNDGSRVVTASSDCTVKVWDL 378 (513)
Q Consensus 303 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~ 378 (513)
+ .......+-+..|-...|+++...|.+.--..+++. .+.... ..+++.+ ++. +..+..++-||.+.-+|
T Consensus 132 k-cgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~PiF~splcv---~~sv~i~~VdG~l~~f~- 205 (354)
T KOG4649|consen 132 K-CGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGPIFASPLCV---GSSVIITTVDGVLTSFD- 205 (354)
T ss_pred c-cCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCccccCceec---cceEEEEEeccEEEEEc-
Confidence 6 344444455666634456666666766655554442 111111 1122211 111 34466666777777777
Q ss_pred CCCceeEeecCCCCCCCCCceeeE-EEec-CCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECC----
Q 010324 379 KSTDCLQTFKPPPPLRGGDASVNS-VHLF-PKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSP---- 452 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~v~~-~~~~-~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~---- 452 (513)
..|+.+..+.... +|.. -+.+ |.. +.+..+..+..+..-...+..+.....+ ....+..+|
T Consensus 206 ~sG~qvwr~~t~G-------pIf~~Pc~s~Ps~-q~i~~~~~~Cf~~~~p~~ghL~w~~~~g-----~t~~vy~~p~l~F 272 (354)
T KOG4649|consen 206 ESGRQVWRPATKG-------PIFMEPCESRPSC-QQISLENENCFCAPLPIAGHLLWATQSG-----TTLHVYLSPKLRF 272 (354)
T ss_pred CCCcEEEeecCCC-------ceecccccCCCcc-eEEEEecCCeEEEeccccceEEEEecCC-----cEEEEEeCcccce
Confidence 5555555443221 1111 0111 211 3444444443333333333333222221 111122222
Q ss_pred -----C---CCEEEEEecCceEEEEECCCceeeEeeecccCCeEEE---E-----E-cC--CCCEEEEEECCCeEEecc
Q 010324 453 -----K---GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGV---T-----H-HP--HRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 453 -----~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~---~-----~-~p--~~~~l~s~~~dg~i~iWd 512 (513)
. .+++..++.||++.|.-.+.. +.....|.+.+..+ . | +| -+..|+.|+.|..|+-||
T Consensus 273 ~~h~~~~S~~~ll~~~s~dgkv~il~~~~s--l~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cld 349 (354)
T KOG4649|consen 273 DLHSPGISYPKLLRRSSGDGKVMILMTSKS--LAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLD 349 (354)
T ss_pred eccCCCCcchhhhhhhcCCCcEEEEEeccc--ccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEe
Confidence 1 456778889999988843321 33333333322222 1 1 23 124567788899999987
No 319
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.76 E-value=1.3e-05 Score=79.42 Aligned_cols=273 Identities=12% Similarity=0.143 Sum_probs=158.9
Q ss_pred CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEE--EEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeec
Q 010324 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVL--CIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 302 (513)
Q Consensus 225 g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 302 (513)
+..+++++.++.+. -.|..+|+............ .+...+. .++.. ++..++.++.+|.|.-+|.++|+.+.++
T Consensus 61 ~g~vy~~~~~g~l~-AlD~~tG~~~W~~~~~~~~~--~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALF-ALDAATGKVLWRYDPKLPAD--RGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEE-EEECCCChhhceeCCCCCcc--ccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence 45677777888884 88998888876654321100 0000110 11111 2257888888999999999999998877
Q ss_pred cccccc----Ce-EEEEEccCCCEEEEee---------CCCcEEEEecCCCceeeEecccccc-----------------
Q 010324 303 ERAHSE----GV-TSLVFSRDGSQILSTS---------FDSTARIHGLKSGKLLKEFRGHSSY----------------- 351 (513)
Q Consensus 303 ~~~~~~----~v-~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~----------------- 351 (513)
...... .+ .+..+. +..++.++ .+|.+..+|..+|+.+..+......
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 532110 01 111222 24555554 3688999999999988776542110
Q ss_pred ---e-eEEEEccCCCEEEEEeCCC------------------cEEEEeCCCCceeEeecCCCCC----CCCCce-eeEEE
Q 010324 352 ---V-NDAIFTNDGSRVVTASSDC------------------TVKVWDLKSTDCLQTFKPPPPL----RGGDAS-VNSVH 404 (513)
Q Consensus 352 ---v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~----~~~~~~-v~~~~ 404 (513)
+ ...++.+.+..++.++.++ .|.-+|..+|+....+...... .....+ +..+.
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 1 1234455566788887665 7999999999988876532210 011111 11111
Q ss_pred -ecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEE------------------ecCc
Q 010324 405 -LFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCV------------------GEDR 464 (513)
Q Consensus 405 -~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g------------------~~dg 464 (513)
........+++++.+|.++..|.. |+.+....... ..++.+| ..++.+ ..+|
T Consensus 295 ~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~------~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G 366 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE------QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKG 366 (488)
T ss_pred ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec------cccccCC--ceEEEccccccccCcccccCCCCCCCce
Confidence 111111367888899999999997 66655543210 1122333 233332 2468
Q ss_pred eEEEEECCCceeeEeeeccc--------CCe--EEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 465 NLYCFSHQSGKLEHLMKVHE--------KDV--IGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 465 ~i~iwd~~~~~~~~~~~~h~--------~~v--~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+...|..+|+.+....... .+. ..+.. .+..++.++.||.|+.+|+
T Consensus 367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEEC
Confidence 89999999999887665331 111 11222 4577888889999987763
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=1.7e-08 Score=98.66 Aligned_cols=260 Identities=17% Similarity=0.260 Sum_probs=169.3
Q ss_pred eeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
.++++ .|....+|++|+-+.++|++|+..|.|+ ++++.+|....... +|..+|+-+.-+.+|..+++.+.
T Consensus 1094 w~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik-~~nv~sG~~e~s~n--------cH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1094 WRSFR-DETALFTCIAFSGGTNHLAVGSHAGEIK-IFNVSSGSMEESVN--------CHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred chhhh-ccccceeeEEeecCCceEEeeeccceEE-EEEccCcccccccc--------ccccccccccccCCcceeeeecc
Confidence 34444 7788899999999999999999999998 99999998766554 49999999999999998877654
Q ss_pred CC--cEEEEEcCC-cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe-cc---cccceeEEEE
Q 010324 285 DG--KIKVWRIRS-GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF-RG---HSSYVNDAIF 357 (513)
Q Consensus 285 dg--~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~---~~~~v~~~~~ 357 (513)
.. -..+|++.+ +....++. .-.++.|+.....-+.|+......+||+.++..+.++ .+ ....-++..|
T Consensus 1164 ~S~PlsaLW~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred ccCchHHHhccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 33 477999864 44444443 3457888865555566666678899999999877663 22 2233477889
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEEEee
Q 010324 358 TNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFS 436 (513)
Q Consensus 358 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~ 436 (513)
+|+...++ .|| .+||++..+.++.|.... ....-.|+|.+ ..++..+ .+||++. +.+..+.
T Consensus 1239 sP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-------~~~~G~FHP~g-~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT-------DYGGGGFHPSG-NEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred CCCcceEe---eCc--eeeeeccHHHHhhhhhhe-------ecccccccCCC-ceEEeec-----hhhhhHHHHHHhcCc
Confidence 99888766 344 489999877666654321 11123578877 4444433 5788873 2222222
Q ss_pred cCccCCCcEEEEEECCCCCEEEEEec--C---------------ceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEE
Q 010324 437 SGKREGGDFVAACVSPKGEWIYCVGE--D---------------RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLL 499 (513)
Q Consensus 437 ~~~~~~~~~~~~~~s~~~~~l~~g~~--d---------------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 499 (513)
.. .-..+.|...|..+++.-. | ...+-+|...-..+.++.+ ..++..++-.|...++
T Consensus 1301 ~L-----dqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l 1374 (1516)
T KOG1832|consen 1301 SL-----DQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFL 1374 (1516)
T ss_pred cc-----cceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceE
Confidence 21 1346777777776654430 0 1123333333344455543 3456667777766666
Q ss_pred EEEE
Q 010324 500 ATYG 503 (513)
Q Consensus 500 ~s~~ 503 (513)
+.--
T Consensus 1375 ~vIe 1378 (1516)
T KOG1832|consen 1375 GVIE 1378 (1516)
T ss_pred EEEe
Confidence 6543
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=2.2e-06 Score=84.27 Aligned_cols=207 Identities=16% Similarity=0.204 Sum_probs=135.8
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccC-eEEEEEccCCCEEEEeeCCC-----cEEEEecCCC-----
Q 010324 271 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEG-VTSLVFSRDGSQILSTSFDS-----TARIHGLKSG----- 339 (513)
Q Consensus 271 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~----- 339 (513)
+|++.+..++.|+.+|.|.+.+ ++-+.+..+. .+... |..+....+.++|++.+.|+ .+++|+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 3678889999999999998887 3444446665 45555 44444443446788777664 4899998632
Q ss_pred -ceee--Eecc-----cccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC--ce-eEeecCCCCCCCCCceeeEEEecCC
Q 010324 340 -KLLK--EFRG-----HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST--DC-LQTFKPPPPLRGGDASVNSVHLFPK 408 (513)
Q Consensus 340 -~~~~--~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (513)
.++. .+.. ...++.+++.+.+-+.+|+|-.+|.|..+.-+-. +. ...+. .....+|+.+.+..+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-----~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS-----HRGKEPITGLALRSD 182 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee-----ccCCCCceeeEEecC
Confidence 2221 1111 3567889999999999999999999998842211 11 11111 134678999999888
Q ss_pred CCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeee-cccCCe
Q 010324 409 NPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK-VHEKDV 487 (513)
Q Consensus 409 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v 487 (513)
+... +.......|.+|.+.++. ........++....|..+++....+++++ +..+++|+.....+-..+. +|....
T Consensus 183 ~~s~-lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 183 GKSV-LFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred Ccee-EEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEE
Confidence 7554 333345578888888776 33343445677788888877655344443 5679999988766666666 665443
No 322
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=5.3e-07 Score=77.89 Aligned_cols=205 Identities=11% Similarity=0.176 Sum_probs=132.1
Q ss_pred cccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc-----eeeEecccc------------cceeEEEEccCC--CEEEE
Q 010324 306 HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK-----LLKEFRGHS------------SYVNDAIFTNDG--SRVVT 366 (513)
Q Consensus 306 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~ 366 (513)
....|+++.|...|.++++|...|.|.++.-.... ....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999754322 222344442 357788887654 36777
Q ss_pred EeCCCcEEEEeCCCCcee-------------------Ee---ecC-------------CC--CCCCCCceeeEEEecCCC
Q 010324 367 ASSDCTVKVWDLKSTDCL-------------------QT---FKP-------------PP--PLRGGDASVNSVHLFPKN 409 (513)
Q Consensus 367 ~~~dg~i~iwd~~~~~~~-------------------~~---~~~-------------~~--~~~~~~~~v~~~~~~~~~ 409 (513)
.+.|.+|++|.+...... .+ +.. +. ....|...++++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 889999999988643100 00 000 00 113556677888887764
Q ss_pred CCeEEEEcCCCcEEEEEcc--CeEEEEeecCcc----CCCcEEEEEECCCC-CEEEEEecCceEEEEECCCcee------
Q 010324 410 PDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKR----EGGDFVAACVSPKG-EWIYCVGEDRNLYCFSHQSGKL------ 476 (513)
Q Consensus 410 ~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~----~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~------ 476 (513)
..+.+..+-.|.+|++. ......+...+. -..-+++..|+|.. ..+...+..|.|.+-|++...+
T Consensus 185 --et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 --ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred --heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 44555677889999987 222222221111 11346678888864 4556667899999999984321
Q ss_pred eEe----------eecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 477 EHL----------MKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 477 ~~~----------~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+.. +..-...|..+.|+|+|+++++-+. -+|+|||.
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDv 308 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDV 308 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEec
Confidence 110 1112346889999999999988764 47999984
No 323
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.69 E-value=2.8e-08 Score=53.31 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhhcChHHHHHHHHhhc
Q 010324 8 RDVIKIVLQFCKENSLQQTFQTLQNEC 34 (513)
Q Consensus 8 ~e~~~li~q~L~~~G~~~t~~~L~~Es 34 (513)
+++++||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 324
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2e-07 Score=84.49 Aligned_cols=210 Identities=16% Similarity=0.192 Sum_probs=146.4
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC--cceeeecccccccCeEEEEEccCCCEEEEeeC-CCcEEEEecCCC
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS--GQCLRRLERAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKSG 339 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~ 339 (513)
|.+.|+.+.-. -.+++.+++.||.++.|.-.. |.........|...|.+++.+-++..+.+++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77778776544 457999999999999997432 32222223478889999999999999999777 999999999876
Q ss_pred ceeeEecc--cccceeEEEEccC-CC-EEE-EEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEE
Q 010324 340 KLLKEFRG--HSSYVNDAIFTND-GS-RVV-TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 414 (513)
Q Consensus 340 ~~~~~~~~--~~~~v~~~~~~~~-~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 414 (513)
..+..++. ..+.+.. ..++. -. .++ +.-.+|.+.++|-....+...+.. .-|..+|..+.+.+.+ ..++
T Consensus 87 DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk----klH~sPV~~i~y~qa~-Ds~v 160 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK----KLHFSPVKKIRYNQAG-DSAV 160 (558)
T ss_pred chhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec----ccccCceEEEEeeccc-ccee
Confidence 65543332 2222221 11221 11 233 334678999999776543322221 2467899999999987 8888
Q ss_pred EEcCCCcEEEEEccCe-----E--E------EEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEe
Q 010324 415 VCNKTSSIYIMTLQGQ-----V--V------KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHL 479 (513)
Q Consensus 415 ~~~~~~~i~i~d~~~~-----~--~------~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 479 (513)
+....|.|..|...+. . . .-+...........++.++|+|..+.+-+.|..|++++.++|++++.
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 8999999999998751 0 0 01111223345678999999999999999999999999999876554
No 325
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.67 E-value=2.4e-05 Score=70.57 Aligned_cols=261 Identities=13% Similarity=0.170 Sum_probs=157.9
Q ss_pred CeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCcceeeeccc
Q 010324 235 GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS----------QDGKIKVWRIRSGQCLRRLER 304 (513)
Q Consensus 235 g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~ 304 (513)
+.+ ++.|.++++.+..+. .+-.-.+..+|+++.+++++ ....|.+||..+-.....+..
T Consensus 17 ~rv-~viD~d~~k~lGmi~----------~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i 85 (342)
T PF06433_consen 17 SRV-YVIDADSGKLLGMID----------TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI 85 (342)
T ss_dssp EEE-EEEETTTTEEEEEEE----------EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred ceE-EEEECCCCcEEEEee----------cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec
Confidence 467 488888887765543 22333467899999888753 234799999998877665542
Q ss_pred ccc------cCeEEEEEccCCCEEEEeeC--CCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEE
Q 010324 305 AHS------EGVTSLVFSRDGSQILSTSF--DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 376 (513)
Q Consensus 305 ~~~------~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 376 (513)
... ......+++.|++++++... -..|.|.|+..++.+.++.... +..+--+++ ..+.+-|.||.+.-.
T Consensus 86 P~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~~-~~F~~lC~DGsl~~v 162 (342)
T PF06433_consen 86 PPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSGN-RGFSMLCGDGSLLTV 162 (342)
T ss_dssp TTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEET-TEEEEEETTSCEEEE
T ss_pred CCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecCC-CceEEEecCCceEEE
Confidence 221 12234678888988887643 4578999999888888776332 222222222 468888999999999
Q ss_pred eCC-CCceeEeecCCCCCCCCCce-eeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEE---EeecCc---c----CCCc
Q 010324 377 DLK-STDCLQTFKPPPPLRGGDAS-VNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVK---SFSSGK---R----EGGD 444 (513)
Q Consensus 377 d~~-~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~---~~~~~~---~----~~~~ 444 (513)
.+. .|+....... .+.....+ ...-.+...+ ..++..+.+|.|+-.|+.+.... .+.... . ..+.
T Consensus 163 ~Ld~~Gk~~~~~t~--~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG 239 (342)
T PF06433_consen 163 TLDADGKEAQKSTK--VFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG 239 (342)
T ss_dssp EETSTSSEEEEEEE--ESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred EECCCCCEeEeecc--ccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence 888 4554432211 11111122 2222333333 56666888999999999854322 222110 0 0112
Q ss_pred EEEEEECCCCCEEEEEecCc----------eEEEEECCCceeeEeeecccCCeEEEEEcCCC-CEEEEEE-CCCeEEecc
Q 010324 445 FVAACVSPKGEWIYCVGEDR----------NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR-NLLATYG-EDCTMKLWK 512 (513)
Q Consensus 445 ~~~~~~s~~~~~l~~g~~dg----------~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~-~dg~i~iWd 512 (513)
...+++++..+.|++--..| .|.++|+.+++.+..+.. ..++.+++.+.+. .+|++.+ .++.+.+||
T Consensus 240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 23467776666555543221 488899999999998874 3467799999865 4665554 589999998
Q ss_pred C
Q 010324 513 P 513 (513)
Q Consensus 513 p 513 (513)
+
T Consensus 319 ~ 319 (342)
T PF06433_consen 319 A 319 (342)
T ss_dssp T
T ss_pred C
Confidence 6
No 326
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.66 E-value=1.1e-05 Score=70.87 Aligned_cols=207 Identities=14% Similarity=0.211 Sum_probs=122.5
Q ss_pred ccCCccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC
Q 010324 261 MMHDETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG 339 (513)
Q Consensus 261 ~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 339 (513)
.+-...+..++|+|+.+ ++++....+.|.-++. +|+.++++........-.+++..++.++++.-.++.+.++++...
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence 34456699999999755 5555666778888885 588888876555567889999877776666666899999988432
Q ss_pred c------eeeEec-----ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCC---CceeEeecC--CCCCCCCCceeeEE
Q 010324 340 K------LLKEFR-----GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS---TDCLQTFKP--PPPLRGGDASVNSV 403 (513)
Q Consensus 340 ~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~--~~~~~~~~~~v~~~ 403 (513)
. ....+. .++..+-.++|+|.++.|+.+-...-..+|.+.. ......... .......-..+.++
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence 1 111221 2445689999999988888887777777776653 111111100 00011223457889
Q ss_pred EecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCcc------CCCcEEEEEECCCCCEEEEEecCceEEEE
Q 010324 404 HLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKR------EGGDFVAACVSPKGEWIYCVGEDRNLYCF 469 (513)
Q Consensus 404 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 469 (513)
+++|..+.+++.+..+..+..+|..|+.+..+.-... .-...-.+++.++|+ |+..++-+..++|
T Consensus 177 ~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 177 SYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 9999988899999999999999988887766554331 123467899999985 5555566666665
No 327
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.63 E-value=1.1e-07 Score=57.52 Aligned_cols=39 Identities=46% Similarity=0.855 Sum_probs=36.7
Q ss_pred CceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEe
Q 010324 339 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 377 (513)
++++..+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 457888999999999999999999999999999999997
No 328
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.63 E-value=3.8e-08 Score=93.02 Aligned_cols=203 Identities=16% Similarity=0.238 Sum_probs=135.3
Q ss_pred CceeEEEECCC--CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEEEe----CCC
Q 010324 214 SHAECARFSPD--GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGS----QDG 286 (513)
Q Consensus 214 ~~v~~~~~s~~--g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~----~dg 286 (513)
..+.|++++-+ ...+++|..+|.|. +-......-. ......+|....++++|++ |...||.|- .|.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~-l~s~r~~hdS------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNIS-LLSVRHPHDS------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceE-EeecCCcccc------cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence 34677776653 35889999999995 6554432211 1223445888999999999 677888773 367
Q ss_pred cEEEEEcCCc--cee--eecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC-ceeeEecccccceeEEEEcc-C
Q 010324 287 KIKVWRIRSG--QCL--RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTN-D 360 (513)
Q Consensus 287 ~i~vwd~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~ 360 (513)
.+.|||+.++ .+. ..+..+......+++|..+.+.+.+|.....+.++|++.. .....+ .+..+..+...| .
T Consensus 130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFS 207 (783)
T ss_pred CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCC
Confidence 8999999876 222 2222123445668999989999999999999999998732 222222 234567778888 6
Q ss_pred CCEEEEEeCCCcEEEEe-CCCCc-eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC-CcEEEEEcc
Q 010324 361 GSRVVTASSDCTVKVWD-LKSTD-CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-SSIYIMTLQ 428 (513)
Q Consensus 361 ~~~l~~~~~dg~i~iwd-~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-~~i~i~d~~ 428 (513)
++++++.. ||.|.+|| .++-+ ++..+.... ......+..++|.|.....+++...+ ++|+.+|+.
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~--N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNE--NKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCC--CCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 67776655 99999999 43322 112211111 11223688999999887788777765 789999985
No 329
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.60 E-value=4.5e-05 Score=75.58 Aligned_cols=238 Identities=14% Similarity=0.187 Sum_probs=141.5
Q ss_pred CEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC--CCCEEEEEe---------CCCcEEEEEcC
Q 010324 226 QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGS---------QDGKIKVWRIR 294 (513)
Q Consensus 226 ~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~---------~dg~i~vwd~~ 294 (513)
..++.++.+|.+. -+|..+|+........... ..-..+.-+| .+..++.++ .+|.+..+|..
T Consensus 111 ~~V~v~~~~g~v~-AlD~~TG~~~W~~~~~~~~------~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~ 183 (488)
T cd00216 111 RKVFFGTFDGRLV-ALDAETGKQVWKFGNNDQV------PPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVE 183 (488)
T ss_pred CeEEEecCCCeEE-EEECCCCCEeeeecCCCCc------CcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECC
Confidence 6788888899994 8999999887765432110 0000111122 123455543 36789999999
Q ss_pred Ccceeeeccccccc-------------------Ce-EEEEEccCCCEEEEeeCCC------------------cEEEEec
Q 010324 295 SGQCLRRLERAHSE-------------------GV-TSLVFSRDGSQILSTSFDS------------------TARIHGL 336 (513)
Q Consensus 295 ~~~~~~~~~~~~~~-------------------~v-~~~~~~~~~~~l~~~~~dg------------------~i~i~d~ 336 (513)
+|+.+.++...... .+ ...++.+.+..+++++.++ .|.-+|.
T Consensus 184 TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~ 263 (488)
T cd00216 184 TGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA 263 (488)
T ss_pred CCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC
Confidence 99988776532111 01 1234444567788887665 7999999
Q ss_pred CCCceeeEecccccce------eEEEEc----cCCC---EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEE
Q 010324 337 KSGKLLKEFRGHSSYV------NDAIFT----NDGS---RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSV 403 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~v------~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
.+|+....++...... ....+. -++. .+++++.+|.+...|.++|+.+....... ..+
T Consensus 264 ~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---------~~~ 334 (488)
T cd00216 264 DTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---------QPM 334 (488)
T ss_pred CCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---------ccc
Confidence 9999988765321111 111111 1333 57788889999999999999887654220 011
Q ss_pred EecCCCCCeEEE------------------EcCCCcEEEEEcc-CeEEEEeecCccC-----CCcEEEEEECCCCCEEEE
Q 010324 404 HLFPKNPDHIVV------------------CNKTSSIYIMTLQ-GQVVKSFSSGKRE-----GGDFVAACVSPKGEWIYC 459 (513)
Q Consensus 404 ~~~~~~~~~l~~------------------~~~~~~i~i~d~~-~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~ 459 (513)
...| ..+++ ...+|.+.-.|.. ++.+......... +.+.........+..|++
T Consensus 335 ~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~ 411 (488)
T cd00216 335 AYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA 411 (488)
T ss_pred ccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE
Confidence 1111 12222 2245677777776 5555554433100 011111111124678999
Q ss_pred EecCceEEEEECCCceeeEeeec
Q 010324 460 VGEDRNLYCFSHQSGKLEHLMKV 482 (513)
Q Consensus 460 g~~dg~i~iwd~~~~~~~~~~~~ 482 (513)
++.||.++.+|..+|+.+...+.
T Consensus 412 g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 412 GAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred ECCCCeEEEEECCCCceeeEEEC
Confidence 99999999999999999988764
No 330
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.1e-07 Score=83.24 Aligned_cols=200 Identities=16% Similarity=0.188 Sum_probs=143.8
Q ss_pred ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC--C-ceeeEecccccceeEEEEccCCCEEEEEeC-CCcEEEEeCCC
Q 010324 305 AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS--G-KLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DCTVKVWDLKS 380 (513)
Q Consensus 305 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 380 (513)
-|...|+.+... ..+++.+++.||.++.|.-.. + +.+..+..|...|.+++.+-+|..+.+++. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 477777777665 567999999999999997532 1 345566778899999999999999999787 99999999987
Q ss_pred CceeEeecCCCCCCCCCceeeEEEecCCCC---CeEE-EEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCE
Q 010324 381 TDCLQTFKPPPPLRGGDASVNSVHLFPKNP---DHIV-VCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEW 456 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~-~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 456 (513)
-..+.-++... ....+.|....+ ..++ ..-.++.+.++|-.+...........|..++..+.+.+-+..
T Consensus 86 ~DminmiKL~~-------lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVD-------LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhccccc-------CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 65543333221 111222222211 1333 334678999999886654444444556788999999999999
Q ss_pred EEEEecCceEEEEECCC------ceeeEeee---------cccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 457 IYCVGEDRNLYCFSHQS------GKLEHLMK---------VHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 457 l~~g~~dg~i~iwd~~~------~~~~~~~~---------~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+++....|.|.-|.... .+....++ -.....+++.|+|++..+.+-+.|..|++++
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~ 229 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV 229 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence 99999999999999773 11111111 1234678999999999999999999999864
No 331
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.9e-06 Score=76.57 Aligned_cols=172 Identities=15% Similarity=0.105 Sum_probs=117.9
Q ss_pred cChhhHHHHHHHHHhhcChHHHHHHHHhhcCcc----ccccccHHHHHHHhccCChhhHHhhhccc-----cCChhhHHH
Q 010324 5 IEARDVIKIVLQFCKENSLQQTFQTLQNECQVS----LNTVDSIETFVADINSGRWDAILPQVAQL-----KLPRNKLED 75 (513)
Q Consensus 5 ~~~~e~~~li~q~L~~~G~~~t~~~L~~Esg~~----~~~~~~~~~~~~~i~~g~w~~~~~~l~~~-----~~~~~~~~~ 75 (513)
-++.-+.|+|..||.-+||.+||..|.++|.+. ++--..+..++.+++.|+...|+.+.+.= +.....-+.
T Consensus 113 w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~ 192 (389)
T KOG0396|consen 113 WPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQ 192 (389)
T ss_pred hHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhH
Confidence 356678999999999999999999999999874 11112355688999999999999887653 233344678
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhCchhhhhccCCHHHHHHHHHHhcccCCCccccccCChHHHHHHHHHHHHhcccc--
Q 010324 76 LYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEHLLVRTYFDAHEAYQDSTKERRRAQIAQAIAAEVS-- 153 (513)
Q Consensus 76 ~~~~~~le~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 153 (513)
+..|.|.||++.+++.+|+.+.|+...+. ...+.+.++....++..+..-....+.......+-.-+...+..++.
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~--~~~~~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s~a~~l 270 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPW--AKSHKSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLSEALKL 270 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhh--hhhhHHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999886653 55777788877777765443333324444445555555555554331
Q ss_pred -cCC-hhHHHHHHHHHHhhhh-hcCCCC
Q 010324 154 -VVP-PSRLMALIGQALKWQQ-HQGLLP 178 (513)
Q Consensus 154 -~~~-~~rl~~l~~~~~~~q~-~~~~~~ 178 (513)
.+| ..+|...++-.+.-+. ..|..+
T Consensus 271 ~~i~~~~~L~~~l~~GLsalKTp~c~~~ 298 (389)
T KOG0396|consen 271 FGIPINPALTIYLQAGLSALKTPRCLND 298 (389)
T ss_pred hCCCCCcHHHHHHHhhhhhccccccccc
Confidence 222 2336666665554332 235444
No 332
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.58 E-value=2.4e-05 Score=69.68 Aligned_cols=185 Identities=22% Similarity=0.324 Sum_probs=123.5
Q ss_pred EEECCCCCEEEEE-----ecCCeEEEEEecc-ccccccccccccccccccCCccEEEEEEcCCCCEEEEEe---------
Q 010324 219 ARFSPDGQFLVSC-----SFDGFIEVVWDYL-SGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS--------- 283 (513)
Q Consensus 219 ~~~s~~g~~la~g-----~~dg~i~~iwd~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~--------- 283 (513)
..||+||++|++. +..|.|- |||.. +-..+. .+..|.-....+.+.|||+.|+.+.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~Ig-Vyd~~~~~~ri~--------E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~ 126 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIG-VYDAARGYRRIG--------EFPSHGIGPHELLLMPDGETLVVANGGIETHPDS 126 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEE-EEECcCCcEEEe--------EecCCCcChhhEEEcCCCCEEEEEcCCCccCccc
Confidence 4899999999985 4568896 99998 323232 3334666677889999998888762
Q ss_pred ---------CCCcEEEEEcCCcceeeecc---cccccCeEEEEEccCCCEEEEeeCCCc-------EEEEecCCCceeeE
Q 010324 284 ---------QDGKIKVWRIRSGQCLRRLE---RAHSEGVTSLVFSRDGSQILSTSFDST-------ARIHGLKSGKLLKE 344 (513)
Q Consensus 284 ---------~dg~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~ 344 (513)
.+.++...|..+|+.+.+.. ..|...|..+++.++|..++..-..|. |-+++. ++.+..
T Consensus 127 GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~ 204 (305)
T PF07433_consen 127 GRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRL 204 (305)
T ss_pred CceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCccee
Confidence 22356677788888777643 136678999999999977666554442 444443 332222
Q ss_pred e-------cccccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE
Q 010324 345 F-------RGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 345 ~-------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 416 (513)
+ ....+.+-+|++++++..+++.+ ..+.+.+||..+++.+.....+ .+..++..+.+ ++++
T Consensus 205 ~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--------D~cGva~~~~~---f~~s 273 (305)
T PF07433_consen 205 LPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--------DACGVAPTDDG---FLVS 273 (305)
T ss_pred ccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--------ceeeeeecCCc---eEEe
Confidence 2 23457799999999998776555 5778999999999887765432 34445544433 4555
Q ss_pred cCCCcEEEE
Q 010324 417 NKTSSIYIM 425 (513)
Q Consensus 417 ~~~~~i~i~ 425 (513)
+..|.+...
T Consensus 274 sG~G~~~~~ 282 (305)
T PF07433_consen 274 SGQGQLIRL 282 (305)
T ss_pred CCCccEEEc
Confidence 555554433
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.57 E-value=2.9e-05 Score=75.72 Aligned_cols=221 Identities=11% Similarity=0.110 Sum_probs=129.1
Q ss_pred CCCEEEEEeC-CCcEEEEEcCCcceeeecccccccCeEEEEEc--cCCCEEEEee------------------CCCcEEE
Q 010324 275 DSEMLASGSQ-DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS--RDGSQILSTS------------------FDSTARI 333 (513)
Q Consensus 275 ~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~------------------~dg~i~i 333 (513)
||++|+.-.. +..|-..++..-++-+.+.......+..++|- |+..+++.++ ..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6778887754 45666666665544433332333444444443 3434444332 2355677
Q ss_pred EecCCCceeeEecccccceeEEEEccCCCEEEEEeC----------------------------------------CCcE
Q 010324 334 HGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS----------------------------------------DCTV 373 (513)
Q Consensus 334 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------------------------------------dg~i 373 (513)
.|..+.+...++.-.. ....+.++|+|+++++.+. ++.|
T Consensus 220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 7777666655554322 3456778888888777651 2346
Q ss_pred EEEeCCC-----CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEE---------EEeecCc
Q 010324 374 KVWDLKS-----TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV---------KSFSSGK 439 (513)
Q Consensus 374 ~iwd~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~---------~~~~~~~ 439 (513)
.+.|.++ ......+.. ......+.++|++...++++..++.+.++|+..... ..+....
T Consensus 299 ~VID~~t~~~~~~~v~~yIPV-------GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYVPV-------PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred EEEECCccccCCcceEEEEEC-------CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 6666665 233333332 235678899999977777777899999999974221 1111111
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCceEEEEECCC----------ceeeEeeecccCCeE-----EEEEcCCCCEEEEEE
Q 010324 440 REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS----------GKLEHLMKVHEKDVI-----GVTHHPHRNLLATYG 503 (513)
Q Consensus 440 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~-----~~~~~p~~~~l~s~~ 503 (513)
.-+......+|+++|....+-.-|..|..||+.. ...+..+..|-.+-. +=.-.|+|++|++..
T Consensus 372 evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 372 ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 1133355778999998777778999999999876 234444444433221 111245667766653
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=1.2e-06 Score=85.30 Aligned_cols=179 Identities=12% Similarity=0.129 Sum_probs=125.7
Q ss_pred ccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEe
Q 010324 307 SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQT 386 (513)
Q Consensus 307 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 386 (513)
...++|++++ ++.|+.|+.+|.|++++. .+.. .+...|... ..+|.++++|+.||+|.|..+-+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~-~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTC-QGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEec-CCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4557777776 678999999999999987 4444 333334433 66899999999999999999988876665
Q ss_pred ecCCCCCCCCCceeeEEEecCC----CCCeEEEEcCCCcEEEEEcc--CeEEEEeecCccCCCcEEEEEECCCCCEEEEE
Q 010324 387 FKPPPPLRGGDASVNSVHLFPK----NPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCV 460 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 460 (513)
+.. ..++.+++++|+ ....+++|+..| +.++.-+ ++.... ..+...++|.+++|. |+++|-+
T Consensus 109 ~df-------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~--g~lIAWa 176 (846)
T KOG2066|consen 109 YDF-------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWR--GNLIAWA 176 (846)
T ss_pred Eec-------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeecCccceEEEEec--CcEEEEe
Confidence 543 347899999997 346889999888 8777765 322222 223356789999986 6677777
Q ss_pred ecCceEEEEECCCceeeEeeecccCC------eEEEEEcCCCCEEEEEECCCeEEe
Q 010324 461 GEDRNLYCFSHQSGKLEHLMKVHEKD------VIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 461 ~~dg~i~iwd~~~~~~~~~~~~h~~~------v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
+. -.|++||..+++.+..++..... ...+.|.++.+++ .|= ..+|+|
T Consensus 177 nd-~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IGW-~d~v~i 229 (846)
T KOG2066|consen 177 ND-DGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IGW-GDSVKI 229 (846)
T ss_pred cC-CCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-Eec-CCeEEE
Confidence 64 45899999999888777654433 3367787655443 342 234554
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.55 E-value=0.00014 Score=69.42 Aligned_cols=111 Identities=12% Similarity=0.101 Sum_probs=76.9
Q ss_pred eeEEEecCCCCCeEEEEc----CCCc----EEEEEccCeEEEEe-ecCccCCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 400 VNSVHLFPKNPDHIVVCN----KTSS----IYIMTLQGQVVKSF-SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 400 v~~~~~~~~~~~~l~~~~----~~~~----i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
..++.|+-..+..+.+.. .+|. -.+|+.....++.. ...-...+.+.+++++|+...++.|+.||.|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 355566655555555432 2333 23455543222222 12223456789999999999999999999999999
Q ss_pred CCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 471 HQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 471 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
...+..... ...-.++.++|||+|.++++|+..|.+.+||
T Consensus 288 ~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 288 TTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred cCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 877643322 3345678999999999999999999999998
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.55 E-value=3.7e-05 Score=73.88 Aligned_cols=220 Identities=15% Similarity=0.217 Sum_probs=113.1
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 292 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd 292 (513)
...+..+.++|+|+++++++ ||.. +|+.....+.. ..+.-...+|.+.++ +|+-..++.|.++.
T Consensus 32 ~~~p~~ls~npngr~v~V~g-~geY-~iyt~~~~r~k-------------~~G~g~~~vw~~~n~-yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-DGEY-EIYTALAWRNK-------------AFGSGLSFVWSSRNR-YAVLESSSTIKIYK 95 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-TTEE-EEEETTTTEEE-------------EEEE-SEEEE-TSSE-EEEE-TTS-EEEEE
T ss_pred CcCCeeEEECCCCCEEEEEc-CCEE-EEEEccCCccc-------------ccCceeEEEEecCcc-EEEEECCCeEEEEE
Confidence 34478899999999999955 6666 37763222111 234556788998554 66666688999974
Q ss_pred cCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCc
Q 010324 293 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCT 372 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 372 (513)
--+......+. ....+..+-. |..|...+. +.|.+||+.+++.+.++... +|..+.|+++|++++..+.+ .
T Consensus 96 n~~~~~~k~i~--~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~ 166 (443)
T PF04053_consen 96 NFKNEVVKSIK--LPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-S 166 (443)
T ss_dssp TTEE-TT-------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--S
T ss_pred cCccccceEEc--CCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-e
Confidence 33444434443 2223444433 777777764 48999999999999998744 38999999999999988865 5
Q ss_pred EEEEeCCCCc-----------eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccC
Q 010324 373 VKVWDLKSTD-----------CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE 441 (513)
Q Consensus 373 i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 441 (513)
+.+++..... ....+. .....|.+..|..+ .++-.+.. .+.. +-+.....+...
T Consensus 167 i~il~~~~~~~~~~~~~g~e~~f~~~~------E~~~~IkSg~W~~d---~fiYtT~~-~lkY--l~~Ge~~~i~~l--- 231 (443)
T PF04053_consen 167 IYILKYNLEAVAAIPEEGVEDAFELIH------EISERIKSGCWVED---CFIYTTSN-HLKY--LVNGETGIIAHL--- 231 (443)
T ss_dssp EEEEEE-HHHHHHBTTTB-GGGEEEEE------EE-S--SEEEEETT---EEEEE-TT-EEEE--EETTEEEEEEE----
T ss_pred EEEEEecchhcccccccCchhceEEEE------EecceeEEEEEEcC---EEEEEcCC-eEEE--EEcCCcceEEEc---
Confidence 7787754330 111111 01346777777653 33333333 5555 222222222211
Q ss_pred CCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 442 GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 442 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
..++.-+.+.+..+.++....|+.|..+.+.
T Consensus 232 d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 232 DKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 1234455566666677777777777777654
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=7.1e-06 Score=80.51 Aligned_cols=109 Identities=15% Similarity=0.297 Sum_probs=85.3
Q ss_pred eEEEECCCCCEEEEEe----cCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010324 217 ECARFSPDGQFLVSCS----FDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 292 (513)
Q Consensus 217 ~~~~~s~~g~~la~g~----~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd 292 (513)
+-.+|+|...++|+++ ..|+|. || .++|+....... +-.+++++|+|..-.|+.|-.-|.+.+|.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVt-If-adtGEPqr~Vt~---------P~hatSLCWHpe~~vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVT-IF-ADTGEPQRDVTY---------PVHATSLCWHPEEFVLAQGWEMGVSDVQK 87 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEE-EE-ecCCCCCccccc---------ceehhhhccChHHHHHhhccccceeEEEe
Confidence 3457999999998886 457886 65 355664443332 23456799999988999999999999999
Q ss_pred cCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecC
Q 010324 293 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 337 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 337 (513)
..+.+. .+....|+.+|..+.|+|+|..++++..-|.|.+|...
T Consensus 88 ~~~~e~-htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTET-HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCcee-eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 776554 44445899999999999999999999999999999764
No 338
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=0.00029 Score=67.37 Aligned_cols=224 Identities=12% Similarity=0.163 Sum_probs=155.7
Q ss_pred ccEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeC---CCcEEEEecCCCc
Q 010324 265 ETVLCIEFSRDSEMLA-SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF---DSTARIHGLKSGK 340 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~ 340 (513)
..-..++.++.+..+. +...++.|.+.|..+.........+. ....++++|+++.+.++.. ++++.+.|..+++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 3456788888887444 44456899999988887777765333 6778999999988887765 6899999998888
Q ss_pred eeeEecccccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC
Q 010324 341 LLKEFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT 419 (513)
Q Consensus 341 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 419 (513)
.......-..+ ..++++|+|+.+.... .++.|.+.|..+..... ...............+.+.|++....+....+
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 88875544344 8899999999666655 78999999977655442 22111123344557788899885566665555
Q ss_pred --CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEec-CceEEEEECCCceeeEeeecccC---CeEEEEEc
Q 010324 420 --SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGE-DRNLYCFSHQSGKLEHLMKVHEK---DVIGVTHH 493 (513)
Q Consensus 420 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~---~v~~~~~~ 493 (513)
+.+...|.....+.......... ....+..+|+|.++++... .+.+.+.|..+............ .+..+++.
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~ 307 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAIS 307 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccce
Confidence 58888888855444442222222 4557889999999998854 48999999988877766554332 34455554
Q ss_pred C
Q 010324 494 P 494 (513)
Q Consensus 494 p 494 (513)
+
T Consensus 308 ~ 308 (381)
T COG3391 308 P 308 (381)
T ss_pred e
Confidence 4
No 339
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.52 E-value=0.00015 Score=69.81 Aligned_cols=200 Identities=16% Similarity=0.200 Sum_probs=107.2
Q ss_pred cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe-------cccccceeEEEEcc
Q 010324 287 KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF-------RGHSSYVNDAIFTN 359 (513)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~ 359 (513)
.|.+|+ ..|+.+.++.-.. +.+.++.|+.+ ..|++...||.+++||+. |+....+ .-....+....+..
T Consensus 62 ~I~iys-~sG~ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEEC-CCCCEeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCC
Confidence 599998 5577787776434 89999999975 456677789999999985 4331111 11112222223333
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc-eeEeec-CCCCCCC-C-CceeeE-EEecCCCCCeEEEEcCCCcEEEEEccCeEEEE
Q 010324 360 DGSRVVTASSDCTVKVWDLKSTD-CLQTFK-PPPPLRG-G-DASVNS-VHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKS 434 (513)
Q Consensus 360 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~-~~~~~~~-~-~~~v~~-~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 434 (513)
+| ++.-..++.+.+.+--... ..+.+. .+..... + ...... ..+..+. ...+....++.+.+.+-... ..
T Consensus 138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~--~~ 212 (410)
T PF04841_consen 138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSF--KQ 212 (410)
T ss_pred CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccc--cc
Confidence 55 3333445555444322211 111111 1110000 0 000011 1122222 23333333444443332211 00
Q ss_pred eecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc-cCCeEEEEEcCCCCEE
Q 010324 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH-EKDVIGVTHHPHRNLL 499 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l 499 (513)
....+++..+++||+|+++|.-..+|.+.+.+..-.+....+... ......+.|.-+...+
T Consensus 213 ----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 213 ----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred ----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence 112357999999999999999999999999987666666555544 3466778887654433
No 340
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.45 E-value=0.00023 Score=65.20 Aligned_cols=236 Identities=15% Similarity=0.200 Sum_probs=134.6
Q ss_pred CCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeec
Q 010324 223 PDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 302 (513)
Q Consensus 223 ~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 302 (513)
..++.|+.|+.+| + ++++........... +..+|..+...|+-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l-~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-L-YVYDLSDPSKPTRIL---------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred cCCCEEEEEECCC-E-EEEEecCCccceeEe---------ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccc
Confidence 4678999999999 6 488883222211111 344599999999877777765 699999998754433311
Q ss_pred -------------ccccccCeEEEE--EccCCCEEEEeeCCCcEEEEecCCC-----ceeeEecccccceeEEEEccCCC
Q 010324 303 -------------ERAHSEGVTSLV--FSRDGSQILSTSFDSTARIHGLKSG-----KLLKEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 303 -------------~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~ 362 (513)
.......+...+ -.+.+...++......|.+|..... +...++. -...+.+++|. ++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~ 149 (275)
T PF00780_consen 73 APLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GN 149 (275)
T ss_pred ccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CC
Confidence 112233455444 1123333444444568888877553 3444444 34678899998 45
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEeecCCCCC------CCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEee
Q 010324 363 RVVTASSDCTVKVWDLKSTDCLQTFKPPPPL------RGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFS 436 (513)
Q Consensus 363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 436 (513)
.++.|..++ ..+.|+.++.....+...... .....++..+.. +++ .++++ . +..-.+.|..|...+...
T Consensus 150 ~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-e~Ll~-~-~~~g~fv~~~G~~~r~~~ 224 (275)
T PF00780_consen 150 KICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDN-EFLLC-Y-DNIGVFVNKNGEPSRKST 224 (275)
T ss_pred EEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCc-eEEEE-e-cceEEEEcCCCCcCcccE
Confidence 677777555 888999977654443222110 001112222222 222 44443 2 344555566665443111
Q ss_pred cCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc
Q 010324 437 SGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH 483 (513)
Q Consensus 437 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 483 (513)
..- ...+..+++ ...||++.+. +.|.||++.++++++.+...
T Consensus 225 i~W--~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 225 IQW--SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEc--CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 110 123445555 2347777665 55999999999998888654
No 341
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.44 E-value=0.00025 Score=64.08 Aligned_cols=274 Identities=15% Similarity=0.173 Sum_probs=157.4
Q ss_pred ccccCcccceeeeeccccCceeEEEECCCCCEEEEEe----------cCCeEEEEEeccccccccccccccccccccCCc
Q 010324 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCS----------FDGFIEVVWDYLSGKLKKDLQYQADETFMMHDE 265 (513)
Q Consensus 196 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~----------~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~ 265 (513)
+.|....+..-.+..+..+. +..||+|+.+++++ ....|. +||..+-....++..+...... ...
T Consensus 21 viD~d~~k~lGmi~~g~~~~---~~~spdgk~~y~a~T~~sR~~rG~RtDvv~-~~D~~TL~~~~EI~iP~k~R~~-~~~ 95 (342)
T PF06433_consen 21 VIDADSGKLLGMIDTGFLGN---VALSPDGKTIYVAETFYSRGTRGERTDVVE-IWDTQTLSPTGEIEIPPKPRAQ-VVP 95 (342)
T ss_dssp EEETTTTEEEEEEEEESSEE---EEE-TTSSEEEEEEEEEEETTEEEEEEEEE-EEETTTTEEEEEEEETTS-B---BS-
T ss_pred EEECCCCcEEEEeecccCCc---eeECCCCCEEEEEEEEEeccccccceeEEE-EEecCcCcccceEecCCcchhe-ecc
Confidence 44444455555665554433 66899999988753 345675 9999988777766655431111 112
Q ss_pred cEEEEEEcCCCCEEEEEe--CCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecC-CCcee
Q 010324 266 TVLCIEFSRDSEMLASGS--QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK-SGKLL 342 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~ 342 (513)
....++++.||++++... -..+|.|-|+..++.+..+. .. .+..+--++ ...+.+-|.||.+.-..+. .|+..
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~P-GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--TP-GCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--GT-SEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--CC-CEEEEEecC-CCceEEEecCCceEEEEECCCCCEe
Confidence 234467889999888764 35689999999999887775 22 233332222 2457888889999888887 55554
Q ss_pred eEec----cccc-ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeE--eecCCCCC----CCCCceeeEEEecCCCCC
Q 010324 343 KEFR----GHSS-YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ--TFKPPPPL----RGGDASVNSVHLFPKNPD 411 (513)
Q Consensus 343 ~~~~----~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~----~~~~~~v~~~~~~~~~~~ 411 (513)
.+.. .... .+..-++...+..++-.+.+|.|+--|+....... .+...... .-..+...-+++++..+.
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 3221 1122 23344555556666668889999998887654321 12111000 000112234566665533
Q ss_pred eEEEEc-------CC--CcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCC-EEEEEe-cCceEEEEECCCceeeEe
Q 010324 412 HIVVCN-------KT--SSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGE-WIYCVG-EDRNLYCFSHQSGKLEHL 479 (513)
Q Consensus 412 ~l~~~~-------~~--~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~-~dg~i~iwd~~~~~~~~~ 479 (513)
+++.-. .+ ..|.++|+. ++.+..+... .++.++.++.+.+ +|++.+ .++.+.+||..+|+.+..
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 333221 12 246777776 5566666542 2366888888776 555544 689999999999999988
Q ss_pred eec
Q 010324 480 MKV 482 (513)
Q Consensus 480 ~~~ 482 (513)
+..
T Consensus 328 ~~~ 330 (342)
T PF06433_consen 328 IEQ 330 (342)
T ss_dssp E--
T ss_pred hhc
Confidence 764
No 342
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=98.44 E-value=3.1e-07 Score=53.53 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=29.8
Q ss_pred ChhhHHHHHHHHHhhcChHHHHHHHHhhcCcc
Q 010324 6 EARDVIKIVLQFCKENSLQQTFQTLQNECQVS 37 (513)
Q Consensus 6 ~~~e~~~li~q~L~~~G~~~t~~~L~~Esg~~ 37 (513)
.++++.++|+|||...||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 46889999999999999999999999999974
No 343
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.41 E-value=7.5e-06 Score=81.07 Aligned_cols=183 Identities=11% Similarity=0.183 Sum_probs=134.9
Q ss_pred CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecc
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE 303 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 303 (513)
++..++.|+-...+ +.+|+.+.+....... ....|.-|+. +++++.+|...|+|.+-|..+.+.+.++.
T Consensus 146 ~~~~~i~Gg~Q~~l-i~~Dl~~~~e~r~~~v--------~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKL-IHIDLNTEKETRTTNV--------SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD 214 (1118)
T ss_pred CCcceeecchhhhe-eeeecccceeeeeeec--------cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee
Confidence 34567777776677 4889888776554432 2334665654 57899999999999999999999999997
Q ss_pred cccccCeEEEEEccCCCEEEEeeC---------CCcEEEEecCCCceeeEecccccceeEEEEccC-CCEEEEEeCCCcE
Q 010324 304 RAHSEGVTSLVFSRDGSQILSTSF---------DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND-GSRVVTASSDCTV 373 (513)
Q Consensus 304 ~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i 373 (513)
.|.+.|..+.. .|+.|++++. |..|+|||++..+.+..+.-+.++ .-+.|+|. ...+++++..|..
T Consensus 215 -aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 215 -AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred -ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccce
Confidence 89999987766 5889998875 456899999988877766655443 44667773 4578888999999
Q ss_pred EEEeCCCCc-e---eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc
Q 010324 374 KVWDLKSTD-C---LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 428 (513)
Q Consensus 374 ~iwd~~~~~-~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~ 428 (513)
.+-|..+.. + +..+. .....+..+.+++.+ +.++.+..+|.|.+|.-+
T Consensus 291 q~vd~~~lsNP~~~~~~v~------p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 291 QFVDTATLSNPPAGVKMVN------PNGSGISAFDISSNG-DALAFGDHEGHVNLWADR 342 (1118)
T ss_pred eeccccccCCCccceeEEc------cCCCcceeEEecCCC-ceEEEecccCcEeeecCC
Confidence 999843221 1 11111 123348888999887 999999999999999854
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.35 E-value=0.00012 Score=69.40 Aligned_cols=235 Identities=15% Similarity=0.149 Sum_probs=132.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceee-------------------------ecc-----------------
Q 010324 266 TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLR-------------------------RLE----------------- 303 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-------------------------~~~----------------- 303 (513)
.|+.+.|+++..-|++|...|.|.||.....+.-. .+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998999999999999999764321110 000
Q ss_pred cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEec--c------cccceeEEEEcc-----CC---CEEEEE
Q 010324 304 RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR--G------HSSYVNDAIFTN-----DG---SRVVTA 367 (513)
Q Consensus 304 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~l~~~ 367 (513)
....++|++++.+ |=.++++|..+|.+.|.|++....+..-. . ....|+++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1235789999987 55599999999999999998887776522 2 234688888862 33 478999
Q ss_pred eCCCcEEEEeCCC-CceeEeecCCCCCCCCCceeeEEEec-CCC-------------------CCeEEEEcCCCcEEEEE
Q 010324 368 SSDCTVKVWDLKS-TDCLQTFKPPPPLRGGDASVNSVHLF-PKN-------------------PDHIVVCNKTSSIYIMT 426 (513)
Q Consensus 368 ~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-------------------~~~l~~~~~~~~i~i~d 426 (513)
+..|.+.+|.+.- ...............+.+.+..+... .+. -..+++...+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999998751 11111111111111334455554432 111 12355556678888888
Q ss_pred ccC-eEEEEeecCccCCCcEEEEEE-----CCCCCEEEEEecCceEEEEECCCceeeEeeeccc----CCeEEEEEcCCC
Q 010324 427 LQG-QVVKSFSSGKREGGDFVAACV-----SPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHE----KDVIGVTHHPHR 496 (513)
Q Consensus 427 ~~~-~~~~~~~~~~~~~~~~~~~~~-----s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~p~~ 496 (513)
... +........ ......+++ ...+..|++-..+|.|++|.+..-+.+..+..+. ..+....++++|
T Consensus 242 ~~~~k~~~K~~~~---~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G 318 (395)
T PF08596_consen 242 PPKSKGAHKSFDD---PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG 318 (395)
T ss_dssp TT---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred CCCCcccceeecc---ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence 863 332222211 112223444 2356788888899999999999888877766532 234456678888
Q ss_pred CEEEEEEC
Q 010324 497 NLLATYGE 504 (513)
Q Consensus 497 ~~l~s~~~ 504 (513)
..++-.|.
T Consensus 319 di~~~~gp 326 (395)
T PF08596_consen 319 DIFYWTGP 326 (395)
T ss_dssp -EEEE-SS
T ss_pred CEEEEeCc
Confidence 87766553
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.33 E-value=2.4e-07 Score=87.73 Aligned_cols=200 Identities=16% Similarity=0.209 Sum_probs=132.8
Q ss_pred CccEEEEEEcCCC--CEEEEEeCCCcEEEEEcCCccee-eecccccccCeEEEEEcc-CCCEEEEee----CCCcEEEEe
Q 010324 264 DETVLCIEFSRDS--EMLASGSQDGKIKVWRIRSGQCL-RRLERAHSEGVTSLVFSR-DGSQILSTS----FDSTARIHG 335 (513)
Q Consensus 264 ~~~v~~l~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~i~d 335 (513)
...+.|+++.-+. ..++.|..+|.|-+-.++...-. ..+..++..++++++|++ |.+.||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4567788876644 47888999999999988754433 445557889999999998 566777763 356799999
Q ss_pred cCCC--cee--eEecc-cccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCce-eEeecCCCCCCCCCceeeEEEecCCC
Q 010324 336 LKSG--KLL--KEFRG-HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDC-LQTFKPPPPLRGGDASVNSVHLFPKN 409 (513)
Q Consensus 336 ~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (513)
+.++ .+. ..+.+ ......+++|..+.+.+.+|.....++++|++.... ...+ ....+..+.+.|..
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--------nTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--------NTKYVQGITVDPFS 207 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--------hhhhcccceecCCC
Confidence 9876 222 12222 334566889998888999999999999999984321 1111 12245667778866
Q ss_pred CCeEEEEcCCCcEEEEEc-c--CeEEEEeec-CccCCCcEEEEEECCCCC-EEEEEe-cCceEEEEECC
Q 010324 410 PDHIVVCNKTSSIYIMTL-Q--GQVVKSFSS-GKREGGDFVAACVSPKGE-WIYCVG-EDRNLYCFSHQ 472 (513)
Q Consensus 410 ~~~l~~~~~~~~i~i~d~-~--~~~~~~~~~-~~~~~~~~~~~~~s~~~~-~l~~g~-~dg~i~iwd~~ 472 (513)
++++++.. +|.|.+||. . .+.+..+.. .......+..++|.|... .+++.. ..++|+.+|+.
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 67766665 999999994 2 222222111 111223477899988532 333333 67889999975
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.33 E-value=4.3e-06 Score=79.33 Aligned_cols=82 Identities=20% Similarity=0.249 Sum_probs=67.3
Q ss_pred eeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
........++.|.|++++|+.+.|+.|+.||+|. +||...+..... .+.-.++.++|+|+|..+++|+.
T Consensus 251 vsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii-LyD~~~~~t~~~----------ka~~~P~~iaWHp~gai~~V~s~ 319 (545)
T PF11768_consen 251 VSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII-LYDTTRGVTLLA----------KAEFIPTLIAWHPDGAIFVVGSE 319 (545)
T ss_pred EEEEEEecCCcceEEecCcccceEEEEecCCeEE-EEEcCCCeeeee----------eecccceEEEEcCCCcEEEEEcC
Confidence 3445567889999999999999999999999995 999876643211 14556789999999999999999
Q ss_pred CCcEEEEEcCCcc
Q 010324 285 DGKIKVWRIRSGQ 297 (513)
Q Consensus 285 dg~i~vwd~~~~~ 297 (513)
.|.+.+||+.-..
T Consensus 320 qGelQ~FD~ALsp 332 (545)
T PF11768_consen 320 QGELQCFDMALSP 332 (545)
T ss_pred CceEEEEEeecCc
Confidence 9999999986443
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.33 E-value=0.0015 Score=65.11 Aligned_cols=284 Identities=11% Similarity=0.148 Sum_probs=155.8
Q ss_pred CCEEEEEecCCeEEEEEecccccccccccccccccccc---CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee
Q 010324 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMM---HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRR 301 (513)
Q Consensus 225 g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 301 (513)
+..+++++.++.|. -.|..+|+.+............. ....-..+++. +..++.++.|+.+.-.|..+|+.+..
T Consensus 69 ~g~vyv~s~~g~v~-AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVY-ALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEE-EEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEee
Confidence 45677777788884 78888888776654321110000 00000112222 34677788899999999999998877
Q ss_pred cccccccCeEEEEEcc---CCCEEEEee------CCCcEEEEecCCCceeeEeccccc----------------------
Q 010324 302 LERAHSEGVTSLVFSR---DGSQILSTS------FDSTARIHGLKSGKLLKEFRGHSS---------------------- 350 (513)
Q Consensus 302 ~~~~~~~~v~~~~~~~---~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~---------------------- 350 (513)
........-..+.-+| ++ .+++++ .+|.|..+|.++|+.+.++..-..
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 6522111000111112 34 455553 268999999999998876543111
Q ss_pred ---------ce-eEEEEccCCCEEEEEeCC-----C-----------cEEEEeCCCCceeEeecCCCC-CCCCCc--eee
Q 010324 351 ---------YV-NDAIFTNDGSRVVTASSD-----C-----------TVKVWDLKSTDCLQTFKPPPP-LRGGDA--SVN 401 (513)
Q Consensus 351 ---------~v-~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~-~~~~~~--~v~ 401 (513)
.+ ..+++.|...++..+..+ + .|.-.|+++|+....++.... .-..+. ...
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 01 123566655566655522 2 577778999998777664321 001111 111
Q ss_pred EEEecCCCC--CeEEEEcCCCcEEEEEcc-CeEEEE--------eecC-c-cC---------------------------
Q 010324 402 SVHLFPKNP--DHIVVCNKTSSIYIMTLQ-GQVVKS--------FSSG-K-RE--------------------------- 441 (513)
Q Consensus 402 ~~~~~~~~~--~~l~~~~~~~~i~i~d~~-~~~~~~--------~~~~-~-~~--------------------------- 441 (513)
-+....++. ..++.+.++|.+++.|.. |+.+.. +... . ..
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~ 384 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFL 384 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCc
Confidence 111212332 478899999999999997 554311 1000 0 00
Q ss_pred -CCcEEEEEECCCCCEEEEEecC---------------------------------ceEEEEECCCceeeEeeecccCCe
Q 010324 442 -GGDFVAACVSPKGEWIYCVGED---------------------------------RNLYCFSHQSGKLEHLMKVHEKDV 487 (513)
Q Consensus 442 -~~~~~~~~~s~~~~~l~~g~~d---------------------------------g~i~iwd~~~~~~~~~~~~h~~~v 487 (513)
......++++|+..+++....+ |.+.-+|+.+|+.....+......
T Consensus 385 Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~ 464 (527)
T TIGR03075 385 GGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLW 464 (527)
T ss_pred CCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCC
Confidence 0001125666766666544433 457778888888777665322111
Q ss_pred EEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 488 IGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 488 ~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+. ..-.+.+++.++.||.++.+|.
T Consensus 465 ~~~-l~t~g~lvf~g~~~G~l~a~D~ 489 (527)
T TIGR03075 465 GGV-LATAGDLVFYGTLEGYFKAFDA 489 (527)
T ss_pred Ccc-eEECCcEEEEECCCCeEEEEEC
Confidence 121 1124556777888999998874
No 348
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.00011 Score=66.24 Aligned_cols=246 Identities=12% Similarity=0.127 Sum_probs=133.5
Q ss_pred ccccCceeEEEECCCCC-EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCC-CEEEEEeCCCc
Q 010324 210 FGTKSHAECARFSPDGQ-FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS-EMLASGSQDGK 287 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~-~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~ 287 (513)
.+|...|..++|||..+ ++..++.+.+|+ |.|+.+......+. .+ ..+++++|.-|. +++..|...|.
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkik-i~dlet~~~vssy~--------a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIK-IMDLETSCVVSSYI--------AY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEE-EEecccceeeehee--------cc-CCceeeeeccCCcceeEEeccCce
Confidence 37788899999999877 788899999998 99999877665443 24 889999999855 56777788999
Q ss_pred EEEEEcCCcce-eeeccc-ccccCeEEEEEcc------CCCEEEEeeCCCcEEEEecCC--CceeeEec-ccccceeEEE
Q 010324 288 IKVWRIRSGQC-LRRLER-AHSEGVTSLVFSR------DGSQILSTSFDSTARIHGLKS--GKLLKEFR-GHSSYVNDAI 356 (513)
Q Consensus 288 i~vwd~~~~~~-~~~~~~-~~~~~v~~~~~~~------~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~-~~~~~v~~~~ 356 (513)
|.+||++..+. +..+.. ....+|..++.-+ .|..++..+.+ +..|.+.- +....... +..+.+.++.
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeee
Confidence 99999986542 222211 2234555554432 34344444332 34454421 11111111 1244566666
Q ss_pred EccCCCEEEEEeCC-C------cEE-EEeCCCCceeEeecCCCC--CCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEE
Q 010324 357 FTNDGSRVVTASSD-C------TVK-VWDLKSTDCLQTFKPPPP--LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT 426 (513)
Q Consensus 357 ~~~~~~~l~~~~~d-g------~i~-iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d 426 (513)
+.+..+.++..... . .|- --|-++|..+........ ....-..-..+.-.+++...+.++...+.+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 66644544433321 0 011 112233333322211110 0000011122223344434455566678899999
Q ss_pred cc-CeEEEEeecCccCCCcEEEEEE-CCCC-CEEEEEecCceEEEEECC
Q 010324 427 LQ-GQVVKSFSSGKREGGDFVAACV-SPKG-EWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 427 ~~-~~~~~~~~~~~~~~~~~~~~~~-s~~~-~~l~~g~~dg~i~iwd~~ 472 (513)
.. ...+..+... .++..++. .-+| .+|++-+ |..++||..+
T Consensus 418 ~~s~evvQ~l~~~----epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSFEVVQTLALS----EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred cchhheeeecccC----cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 98 4444444432 34666655 2333 4554444 6677777643
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.27 E-value=0.00024 Score=68.18 Aligned_cols=218 Identities=17% Similarity=0.203 Sum_probs=125.1
Q ss_pred CCccEEEEEEcCCCCEEEEEe---CC-CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEe-eCCC--cEEEEe
Q 010324 263 HDETVLCIEFSRDSEMLASGS---QD-GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDS--TARIHG 335 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~---~d-g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~i~d 335 (513)
....+..-+|+|++..++..+ .. ..+.++|+.+++...... ....-..-+|+|||+.|+.+ ..|| .|+++|
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 345677788999998776553 22 469999999887655554 34445567899999988755 4455 477778
Q ss_pred cCCCceeeEecccccceeEEEEccCCCEEEEEeC-CCc--EEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCe
Q 010324 336 LKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DCT--VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH 412 (513)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (513)
+.++. ...+....+.-..-.|+|||++++..+. .|. |.++|...+...+ +... ...-..-.|+|++..+
T Consensus 269 l~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~------~~~~~~p~~SpdG~~i 340 (425)
T COG0823 269 LDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFS------GGGNSNPVWSPDGDKI 340 (425)
T ss_pred CCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eecc------CCCCcCccCCCCCCEE
Confidence 86666 3345444444446789999998887664 444 6666766555422 2211 1111266788998555
Q ss_pred EEEEcCCCc--EEEEEccCeE-EEEeecCccCCCcEEEEEECCCCCEEEEEecCc--eEEEEECCCceeeEeeecccCCe
Q 010324 413 IVVCNKTSS--IYIMTLQGQV-VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR--NLYCFSHQSGKLEHLMKVHEKDV 487 (513)
Q Consensus 413 l~~~~~~~~--i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~v 487 (513)
++....+|. |.+.|+.... .+.+.... .....++.++|+.+...+..+ .+..--..+++....+....+.+
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~----~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~~~~~~~ 416 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGKIRILTSTY----LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLPLADGDV 416 (425)
T ss_pred EEEeccCCceeeEEeccCCCCcEEEccccc----cCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEeccCcce
Confidence 555544455 5555554222 33333221 223456788888776655333 22222222333333333333444
Q ss_pred EEEEEcC
Q 010324 488 IGVTHHP 494 (513)
Q Consensus 488 ~~~~~~p 494 (513)
..-+|+|
T Consensus 417 ~~p~w~~ 423 (425)
T COG0823 417 RVPAWSP 423 (425)
T ss_pred ecccccC
Confidence 4444443
No 350
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.27 E-value=1.8e-05 Score=76.33 Aligned_cols=152 Identities=13% Similarity=0.164 Sum_probs=105.6
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce-
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL- 341 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~- 341 (513)
|...|.--+++..+++++.|+..|.+++|+-..+.....-..+....+..+..+++..++|+|+..|.|.++-+..+.+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 5566777778888999999999999999996666543332223445566778888888899999999999998765422
Q ss_pred ----eeEe-cccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE
Q 010324 342 ----LKEF-RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 342 ----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 416 (513)
+... +.|+..|++++|++++..+++|...|+|..-.+.+. ..-......+...++.|..+.... .+++++
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~--~~~~~~~q~il~~ds~IVQlD~~q---~~LLVS 186 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR--QAFLSKSQEILSEDSEIVQLDYLQ---SYLLVS 186 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh--hhhccccceeeccCcceEEeeccc---ceehHh
Confidence 1111 236789999999999999999999999999888762 111111222234456666666553 344444
Q ss_pred cCC
Q 010324 417 NKT 419 (513)
Q Consensus 417 ~~~ 419 (513)
+-.
T Consensus 187 tl~ 189 (726)
T KOG3621|consen 187 TLT 189 (726)
T ss_pred hhh
Confidence 433
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.27 E-value=0.00043 Score=65.73 Aligned_cols=240 Identities=19% Similarity=0.225 Sum_probs=130.1
Q ss_pred ceeEEEECCCCCEEEEEecCCeEEEEEecccccccc------ccc-----------------------------cccccc
Q 010324 215 HAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKK------DLQ-----------------------------YQADET 259 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~------~~~-----------------------------~~~~~~ 259 (513)
.|+++.|.++..-||+|...|.| ++|.+...+... ... +.+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeV-v~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEV-VLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-E-EEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcE-EEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999999999999999999 698775432221 000 111112
Q ss_pred cccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecc-------cccccCeEEEEEcc-----CC---CEEEE
Q 010324 260 FMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE-------RAHSEGVTSLVFSR-----DG---SQILS 324 (513)
Q Consensus 260 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~~v~~~~~~~-----~~---~~l~~ 324 (513)
+....++|++++.| |=.++|.|..+|.+.|.|++....+..-. ......++++.|.. |+ -.+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 33357899999997 44589999999999999998777655421 12345688888863 33 46889
Q ss_pred eeCCCcEEEEecC--C-Ccee----eEecccccceeEEE-EccC--------------------CCEEEEEeCCCcEEEE
Q 010324 325 TSFDSTARIHGLK--S-GKLL----KEFRGHSSYVNDAI-FTND--------------------GSRVVTASSDCTVKVW 376 (513)
Q Consensus 325 ~~~dg~i~i~d~~--~-~~~~----~~~~~~~~~v~~~~-~~~~--------------------~~~l~~~~~dg~i~iw 376 (513)
|+..|.+.+|.+- . +... .....+.++|..+. ++.+ -+.++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999764 1 2111 11223455565555 3211 1224444556779999
Q ss_pred eCCCCceeEeecCCCCCCCCCceeeEEEec----CCCCCeEEEEcCCCcEEEEEccC-eEEEEeecCc-cCCCcEEEEEE
Q 010324 377 DLKSTDCLQTFKPPPPLRGGDASVNSVHLF----PKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGK-REGGDFVAACV 450 (513)
Q Consensus 377 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~-~~~~~~~~~~~ 450 (513)
...+.+....... .......+.+. ......+++-..+|.++++.+.+ +.+....... .....+...++
T Consensus 241 ~~~~~k~~~K~~~------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi 314 (395)
T PF08596_consen 241 KPPKSKGAHKSFD------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI 314 (395)
T ss_dssp -TT---EEEEE-S------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred eCCCCcccceeec------cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence 9887776554331 11222333332 12336788888999999999973 3444443321 11122335677
Q ss_pred CCCCCEEEEEec
Q 010324 451 SPKGEWIYCVGE 462 (513)
Q Consensus 451 s~~~~~l~~g~~ 462 (513)
+++|..++-.+.
T Consensus 315 s~~Gdi~~~~gp 326 (395)
T PF08596_consen 315 SRNGDIFYWTGP 326 (395)
T ss_dssp -TTS-EEEE-SS
T ss_pred CCCCCEEEEeCc
Confidence 888887766653
No 352
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.26 E-value=0.00043 Score=65.71 Aligned_cols=226 Identities=17% Similarity=0.210 Sum_probs=118.6
Q ss_pred cCCCCEEEEEe---------CCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceee
Q 010324 273 SRDSEMLASGS---------QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK 343 (513)
Q Consensus 273 ~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 343 (513)
|||+++++... ..+.+.++|+.+++...... ....+....|+|+|+.++... ++.|++++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~--~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP--PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC--CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 57888777642 24679999999977554443 267788999999999999887 6889999987764432
Q ss_pred E-eccc----------------ccceeEEEEccCCCEEEEEeCC-CcE--------------------------------
Q 010324 344 E-FRGH----------------SSYVNDAIFTNDGSRVVTASSD-CTV-------------------------------- 373 (513)
Q Consensus 344 ~-~~~~----------------~~~v~~~~~~~~~~~l~~~~~d-g~i-------------------------------- 373 (513)
- ..+. -+.-..+.|+|||++|+....| ..+
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 1 1110 1223568899999998876533 222
Q ss_pred ---EEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE-EcCCC---cEEEEEccC-eEEEEeecCc-cCCCc
Q 010324 374 ---KVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV-CNKTS---SIYIMTLQG-QVVKSFSSGK-REGGD 444 (513)
Q Consensus 374 ---~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~~~---~i~i~d~~~-~~~~~~~~~~-~~~~~ 444 (513)
.++|+.+++.. .+..+.........+..+.|.+++..+++. .+.+. .+.++|... .......... .--..
T Consensus 158 v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 158 VSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp EEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred eEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 22333333221 111110001234567788888876423332 22222 355556642 2111111110 00011
Q ss_pred EEEEEEC-CCCC-EEEEEecCc--eEEEEECCCceeeEeeecccCCeEE-EEEcCCCCEEE-EEE
Q 010324 445 FVAACVS-PKGE-WIYCVGEDR--NLYCFSHQSGKLEHLMKVHEKDVIG-VTHHPHRNLLA-TYG 503 (513)
Q Consensus 445 ~~~~~~s-~~~~-~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~-~~~~p~~~~l~-s~~ 503 (513)
.....+. +++. ++.....+| .|++++...+... .+....-.|+. +.|+++++.+. ++.
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTAN 300 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEES
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEec
Confidence 1234443 5554 555555666 4777777766644 44434456644 67788766544 443
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.26 E-value=0.0004 Score=66.89 Aligned_cols=217 Identities=14% Similarity=0.146 Sum_probs=115.9
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 342 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 342 (513)
....+..+.++|+|++++.++ ||...++.....+.. ..+.....+|.+.+ .+|+-...+.|.++.--+.+..
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k------~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNK------AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEE------EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccc------ccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence 445578999999999998854 788888874333321 12334568898844 5777777889999632233332
Q ss_pred eEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcE
Q 010324 343 KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 422 (513)
Q Consensus 343 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 422 (513)
..++.. ..+..+.. |..|...+.+ .|.+||+.+++.++.+.. ..|..+.|++++ .+++..+. ..+
T Consensus 103 k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--------~~vk~V~Ws~~g-~~val~t~-~~i 167 (443)
T PF04053_consen 103 KSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--------SAVKYVIWSDDG-ELVALVTK-DSI 167 (443)
T ss_dssp -----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---------E-EEEEE-TTS-SEEEEE-S--SE
T ss_pred eEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--------CCCcEEEEECCC-CEEEEEeC-CeE
Confidence 333322 22444433 7777776655 799999999999998862 247899999987 66666654 467
Q ss_pred EEEEccCe------------EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEE
Q 010324 423 YIMTLQGQ------------VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGV 490 (513)
Q Consensus 423 ~i~d~~~~------------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 490 (513)
++++.+.. ....+.. ....|.+.+|..+ .++..+.. .++. +..|.. ..+..-..++.=+
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yll 238 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLL 238 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEE
T ss_pred EEEEecchhcccccccCchhceEEEEE---ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEE
Confidence 77766533 3333322 1234667788765 33333333 6655 333332 2222235577778
Q ss_pred EEcCCCCEEEEEECCCeEEec
Q 010324 491 THHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 491 ~~~p~~~~l~s~~~dg~i~iW 511 (513)
.+.|..+.+.....|+.|..+
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEE
T ss_pred EEEccCCEEEEEECCCCEEEE
Confidence 888877888888888887654
No 354
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.25 E-value=9.8e-05 Score=70.77 Aligned_cols=200 Identities=16% Similarity=0.196 Sum_probs=120.8
Q ss_pred cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEee---CC-CcEEEEecCCCceeeEecccccceeEEEEccCCC
Q 010324 287 KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS---FD-STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 362 (513)
.+.+-|.. |.....+. .....+..-+|+|++..++..+ .. ..+.++|+.+++...... ..+.-....|+|||+
T Consensus 174 ~l~~~D~d-g~~~~~l~-~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLT-DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEec-ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 34444433 44444444 4456677789999998876543 22 469999998886554443 223344568999999
Q ss_pred EEEEEe-CCCc--EEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc--EEEEEccCeEEEEeec
Q 010324 363 RVVTAS-SDCT--VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS--IYIMTLQGQVVKSFSS 437 (513)
Q Consensus 363 ~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~--i~i~d~~~~~~~~~~~ 437 (513)
+++.+. .||. |.++|+.++...+ +. ...+.-..-.|+|++..++++.+..|. |++++.++.....+..
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt------~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~ 323 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR-LT------NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF 323 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee-cc------cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec
Confidence 776554 4555 6666877766322 22 222233366789999888888877775 6666666766655554
Q ss_pred CccCCCcEEEEEECCCCCEEEEEec-Cce--EEEEECCCceeeEeeecccCCeEEEEEcCCCCEEE
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGE-DRN--LYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 500 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~-dg~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 500 (513)
.... -..-.|+|||++++..+. +|. |.+.|+.++.....+. +......-.|.|++..+.
T Consensus 324 ~~~~---~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 324 SGGG---NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIM 385 (425)
T ss_pred cCCC---CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEE
Confidence 3322 226789999999988774 344 7777776665333332 222222334555554443
No 355
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.23 E-value=0.0016 Score=60.25 Aligned_cols=224 Identities=17% Similarity=0.259 Sum_probs=121.8
Q ss_pred EEcCCCCEEEEEeC-C--CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecc
Q 010324 271 EFSRDSEMLASGSQ-D--GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG 347 (513)
Q Consensus 271 ~~~~~~~~l~s~~~-d--g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 347 (513)
+|.++|+.|+.++. | ..+.+.|+.+++..+-.. +.........++|+++.++.......|.-.|+.+.+....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd-g~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD-GPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc-CCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 57889987776654 4 467777888888665544 2222233566778888887776677899999999876655555
Q ss_pred cccceeEEEEc--cCCCEEEEEeC----------------------CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEE
Q 010324 348 HSSYVNDAIFT--NDGSRVVTASS----------------------DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSV 403 (513)
Q Consensus 348 ~~~~v~~~~~~--~~~~~l~~~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
....+-...|. .++..++..-. ...|.--|+.+|+....+. ....+..+
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-------~~~wlgH~ 193 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-------DTDWLGHV 193 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-------ESS-EEEE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-------cCccccCc
Confidence 55555445553 45555443211 1345566777776544443 34467889
Q ss_pred EecCCCCCeEEEEcC------CCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEe-----cCceEEEEECC
Q 010324 404 HLFPKNPDHIVVCNK------TSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-----EDRNLYCFSHQ 472 (513)
Q Consensus 404 ~~~~~~~~~l~~~~~------~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-----~dg~i~iwd~~ 472 (513)
.++|.++..++.|.. |..|.+.+.++...+.+.... ....+..=-|+|||..|..-+ .+..|.-+|..
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 999999888888764 335666666677777776543 244455667899999876543 24467888888
Q ss_pred CceeeEeeecccCCeEEEEEcCCCCEEEEEECC
Q 010324 473 SGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 505 (513)
Q Consensus 473 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d 505 (513)
+++...... ......+.-++|+.+++-=|.|
T Consensus 273 t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 273 TGERRRLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp T--EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred CCCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 886644332 2345567778899888755544
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.22 E-value=0.00019 Score=70.25 Aligned_cols=179 Identities=13% Similarity=0.078 Sum_probs=109.3
Q ss_pred ECCCCCEEEEE-ecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCccee
Q 010324 221 FSPDGQFLVSC-SFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCL 299 (513)
Q Consensus 221 ~s~~g~~la~g-~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 299 (513)
++|||+.+... -..+.+. +.|..+.+....+.. .+....++++|+|+++++.+.+ .+.+..+
T Consensus 200 lpnDGk~l~~~~ey~~~vS-vID~etmeV~~qV~V---------dgnpd~v~~spdGk~afvTsyN-------sE~G~tl 262 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFT-AVDAETMEVAWQVMV---------DGNLDNVDTDYDGKYAFSTCYN-------SEEGVTL 262 (635)
T ss_pred cCCCCCEeecccceeEEEE-EEECccceEEEEEEe---------CCCcccceECCCCCEEEEeccC-------cccCcce
Confidence 45566554332 2334554 556665544433321 2344667899999999888643 2222222
Q ss_pred eecccccccCeEEEE--------EccCCCEEEEeeCCCcEEEEecCC-----CceeeEecccccceeEEEEccCCCEEEE
Q 010324 300 RRLERAHSEGVTSLV--------FSRDGSQILSTSFDSTARIHGLKS-----GKLLKEFRGHSSYVNDAIFTNDGSRVVT 366 (513)
Q Consensus 300 ~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 366 (513)
..+...... ..+. +.++|++...+ ++.|.+.|.++ .+.+..+. -......+.++|||+++++
T Consensus 263 ~em~a~e~d--~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyV 337 (635)
T PRK02888 263 AEMMAAERD--WVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIA 337 (635)
T ss_pred eeeccccCc--eEEEEchHHHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEE
Confidence 222211111 2222 34578776663 67899999988 34444444 3455788999999998887
Q ss_pred EeC-CCcEEEEeCCCCce------------eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC
Q 010324 367 ASS-DCTVKVWDLKSTDC------------LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG 429 (513)
Q Consensus 367 ~~~-dg~i~iwd~~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 429 (513)
++. +.++.+.|+.+.+. ....+ -........|.+++ ..+.+..-|..|..|++..
T Consensus 338 anklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-------vGlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 338 NGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-------LGLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-------cCCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 765 88999999987553 11111 12234456777776 6778888899999999863
No 357
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.19 E-value=0.0057 Score=59.71 Aligned_cols=244 Identities=17% Similarity=0.189 Sum_probs=134.8
Q ss_pred ceeEEEECCCCCEEEEE-ecCC----eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCC---
Q 010324 215 HAECARFSPDGQFLVSC-SFDG----FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG--- 286 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g-~~dg----~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg--- 286 (513)
.+...++||||+++|.+ +..| .++ +.|+.+|+.....- .......+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~-v~Dl~tg~~l~d~i---------~~~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLR-VFDLETGKFLPDGI---------ENPKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEE-EEETTTTEEEEEEE---------EEEESEEEEECTTSSEEEEEECSTTTS
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEE-EEECCCCcCcCCcc---------cccccceEEEeCCCCEEEEEEeCcccc
Confidence 34467899999999976 3333 475 99999986553211 111122399999988877765433
Q ss_pred --------cEEEEEcCCccee--eecccccccC-eEEEEEccCCCEEEEeeCC----CcEEEEecCCC----ceeeEecc
Q 010324 287 --------KIKVWRIRSGQCL--RRLERAHSEG-VTSLVFSRDGSQILSTSFD----STARIHGLKSG----KLLKEFRG 347 (513)
Q Consensus 287 --------~i~vwd~~~~~~~--~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~----~~~~~~~~ 347 (513)
.|+.|++.++... ..+....... ...+..++|+++++..+.. ..+++.|+..+ .....+..
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 3788888766432 3333222333 6788999999998764332 35788888764 22333332
Q ss_pred cccce-eEEEEccCCCEEEEEe---CCCcEEEEeCCCCce---eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC
Q 010324 348 HSSYV-NDAIFTNDGSRVVTAS---SDCTVKVWDLKSTDC---LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS 420 (513)
Q Consensus 348 ~~~~v-~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 420 (513)
....+ ..+... .+.+++... ..+.|.-.++.+... ...+.+. .....+..+.... ..+++....++
T Consensus 275 ~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~----~~~~~l~~~~~~~--~~Lvl~~~~~~ 347 (414)
T PF02897_consen 275 REDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE----DEDVSLEDVSLFK--DYLVLSYRENG 347 (414)
T ss_dssp SSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE------SSSEEEEEEEEET--TEEEEEEEETT
T ss_pred CCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC----CCceeEEEEEEEC--CEEEEEEEECC
Confidence 22223 333333 344444332 246677777776652 1122211 1122455555543 24555555444
Q ss_pred --cEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEe----cCceEEEEECCCceee
Q 010324 421 --SIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG----EDRNLYCFSHQSGKLE 477 (513)
Q Consensus 421 --~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----~dg~i~iwd~~~~~~~ 477 (513)
.|+++++. +.......... .+.+..+...+++..+...- .-++++.||+.+++..
T Consensus 348 ~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 348 SSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred ccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 68888998 77666665543 33455555556655443322 3467889999888754
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.14 E-value=0.0094 Score=59.53 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=93.5
Q ss_pred CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC---CCCEEEEEe------CCCcEEEEEcCC
Q 010324 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR---DSEMLASGS------QDGKIKVWRIRS 295 (513)
Q Consensus 225 g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~~------~dg~i~vwd~~~ 295 (513)
+..++.++.|+.+ +-.|..+|+......... +... ..+.-+| ++ .++.+. .+|.|.-+|.++
T Consensus 120 ~~~v~v~t~dg~l-~ALDa~TGk~~W~~~~~~------~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~T 190 (527)
T TIGR03075 120 DGKVFFGTLDARL-VALDAKTGKVVWSKKNGD------YKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKT 190 (527)
T ss_pred CCEEEEEcCCCEE-EEEECCCCCEEeeccccc------cccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCC
Confidence 3467778888888 488888888876554311 1100 0111122 34 455543 268999999999
Q ss_pred cceeeeccccccc------------------------------Ce-EEEEEccCCCEEEEeeCC-----C----------
Q 010324 296 GQCLRRLERAHSE------------------------------GV-TSLVFSRDGSQILSTSFD-----S---------- 329 (513)
Q Consensus 296 ~~~~~~~~~~~~~------------------------------~v-~~~~~~~~~~~l~~~~~d-----g---------- 329 (513)
|+.+.++...... .+ ..+++.|+..+++.+..+ +
T Consensus 191 G~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~ 270 (527)
T TIGR03075 191 GKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYT 270 (527)
T ss_pred CceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccc
Confidence 9988765422111 11 133566666666665522 2
Q ss_pred -cEEEEecCCCceeeEecccccce---------eEEEEccCCC---EEEEEeCCCcEEEEeCCCCcee
Q 010324 330 -TARIHGLKSGKLLKEFRGHSSYV---------NDAIFTNDGS---RVVTASSDCTVKVWDLKSTDCL 384 (513)
Q Consensus 330 -~i~i~d~~~~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~ 384 (513)
.|.-.|+++|+....++.....+ .-+....+|+ .++.++.+|.+.+.|.++|+.+
T Consensus 271 ~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 271 SSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 67788999999888776422211 1222334665 7788999999999999999876
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.13 E-value=0.0011 Score=62.18 Aligned_cols=218 Identities=15% Similarity=0.193 Sum_probs=124.5
Q ss_pred eEEEEEeccccccccccccccccccccCCccEEEEEEcCC----CCEEEEEeC----------CCcEEEEEcCCc-----
Q 010324 236 FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD----SEMLASGSQ----------DGKIKVWRIRSG----- 296 (513)
Q Consensus 236 ~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~l~s~~~----------dg~i~vwd~~~~----- 296 (513)
.|+ +.|..+.+.+..+.+...+ +...+..+.+..+ ..+++.|+. .|.|.++++...
T Consensus 3 ~i~-l~d~~~~~~~~~~~l~~~E----~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~ 77 (321)
T PF03178_consen 3 SIR-LVDPTTFEVLDSFELEPNE----HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNF 77 (321)
T ss_dssp EEE-EEETTTSSEEEEEEEETTE----EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----
T ss_pred EEE-EEeCCCCeEEEEEECCCCc----eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccce
Confidence 465 6676666655544443211 2223334444432 467777753 288999999884
Q ss_pred ceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc-eeeEecc-cccceeEEEEccCCCEEEEEeCCCcEE
Q 010324 297 QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK-LLKEFRG-HSSYVNDAIFTNDGSRVVTASSDCTVK 374 (513)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 374 (513)
+..........++|++++-. ++ +|+++. ++.|.+|++...+ ....-.. ....+.++... ++++++|+....+.
T Consensus 78 ~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~ 152 (321)
T PF03178_consen 78 KLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVS 152 (321)
T ss_dssp EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEE
T ss_pred EEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEE
Confidence 22222223457889998877 44 455554 5899999998777 3332221 22345555554 66999999888888
Q ss_pred EEeCCCC-ceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC--------e-EEEEeecCccCCCc
Q 010324 375 VWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--------Q-VVKSFSSGKREGGD 444 (513)
Q Consensus 375 iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~--------~-~~~~~~~~~~~~~~ 444 (513)
++..+.. .....+... .....++++.+.+++ +.+++++.+|.+.++.... . .+......+ .+..
T Consensus 153 ~~~~~~~~~~l~~va~d----~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~ 226 (321)
T PF03178_consen 153 LLRYDEENNKLILVARD----YQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDI 226 (321)
T ss_dssp EEEEETTTE-EEEEEEE----SS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-
T ss_pred EEEEEccCCEEEEEEec----CCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCc
Confidence 8754432 212222111 124568888888776 5999999999999998762 1 222222222 2345
Q ss_pred EEEE---EECC--CCC------EEEEEecCceEEEE
Q 010324 445 FVAA---CVSP--KGE------WIYCVGEDRNLYCF 469 (513)
Q Consensus 445 ~~~~---~~s~--~~~------~l~~g~~dg~i~iw 469 (513)
++++ ++.| .+. .++.++.+|.|.+.
T Consensus 227 v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 227 VNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 6666 4445 222 48888889988844
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0066 Score=58.18 Aligned_cols=235 Identities=15% Similarity=0.164 Sum_probs=154.0
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEe-eCCCcEEEEecCCCceee
Q 010324 266 TVLCIEFSRDSEMLASGS-QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDSTARIHGLKSGKLLK 343 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~ 343 (513)
....+...|++..+.... ....+...+........... ........++.++.+..+++. ..++.|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~-~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLS-VGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeecc-CCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 455677788775444443 22245555544222222111 111345677888888855544 456899999987777666
Q ss_pred EecccccceeEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC
Q 010324 344 EFRGHSSYVNDAIFTNDGSRVVTASS---DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS 420 (513)
Q Consensus 344 ~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 420 (513)
...... ....++++|+++.+.++.. ++++.+.|..+.....+.... ..+ ..+++.|++...+++...++
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG------~~P-~~~a~~p~g~~vyv~~~~~~ 182 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG------NTP-TGVAVDPDGNKVYVTNSDDN 182 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC------CCc-ceEEECCCCCeEEEEecCCC
Confidence 655333 5778999999987777665 688999999988887774321 122 88999999966777777899
Q ss_pred cEEEEEccCeEEEEeec---CccCCCcEEEEEECCCCCEEEEEecC---ceEEEEECCCceeeEe-eecccCCeEEEEEc
Q 010324 421 SIYIMTLQGQVVKSFSS---GKREGGDFVAACVSPKGEWIYCVGED---RNLYCFSHQSGKLEHL-MKVHEKDVIGVTHH 493 (513)
Q Consensus 421 ~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~ 493 (513)
.+.+.|..+..+.. .. ..........+.++|+|.++++.... +.+...|..++..... ..........+..+
T Consensus 183 ~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~ 261 (381)
T COG3391 183 TVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVD 261 (381)
T ss_pred eEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeEC
Confidence 99999988665553 11 11123345678899999977776644 5999999998877665 22222146678899
Q ss_pred CCCCEEEEEECC-CeEEe
Q 010324 494 PHRNLLATYGED-CTMKL 510 (513)
Q Consensus 494 p~~~~l~s~~~d-g~i~i 510 (513)
|+|..+.+.... +.+.+
T Consensus 262 p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 262 PAGKAAYVANSQGGTVSV 279 (381)
T ss_pred CCCCEEEEEecCCCeEEE
Confidence 999887776433 44443
No 361
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.07 E-value=0.0023 Score=58.57 Aligned_cols=224 Identities=12% Similarity=0.091 Sum_probs=131.2
Q ss_pred EEECCCCC-EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc
Q 010324 219 ARFSPDGQ-FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ 297 (513)
Q Consensus 219 ~~~s~~g~-~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~ 297 (513)
-.|.++.. ++.+--..+.|. -|+..+++... + .+.+.+.++..-..+..|+++.. -+.+++.+++.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~-r~~~~~g~~~~-~---------~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~ 96 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIH-RLDPETGKKRV-F---------PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGG 96 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEE-EecCCcCceEE-E---------ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCc
Confidence 35677666 444555667774 78877654321 1 13444555555555556666532 46677776665
Q ss_pred eeeeccc----ccccCeEEEEEccCCCEEEEeeC-----------CCcEEEEecCCCceeeEecccccceeEEEEccCCC
Q 010324 298 CLRRLER----AHSEGVTSLVFSRDGSQILSTSF-----------DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 298 ~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 362 (513)
.+..+.. ......+.+...|+|.+.++... -|.|+.+|. .+..+..+..+-..-+.++||||++
T Consensus 97 ~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 97 KITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGK 175 (307)
T ss_pred eeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCC
Confidence 5322221 11245677888999987665443 134555554 5666666666666788999999998
Q ss_pred EEEEEeC-CCcEEEEeCCC--CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC-cEEEEEccCeEEEEeecC
Q 010324 363 RVVTASS-DCTVKVWDLKS--TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS-SIYIMTLQGQVVKSFSSG 438 (513)
Q Consensus 363 ~l~~~~~-dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~ 438 (513)
.|..+.. .+.|.-|++.. +..... ..........+....++...++ .+.+++...| .|..|+.+++.+..+...
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pdG~l~~~i~lP 253 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGPIGGR-RGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPDGKLLGEIKLP 253 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCccCCc-ceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCCCcEEEEEECC
Confidence 7777765 47788887763 111100 0000011123445556665555 4443444443 899999998888877765
Q ss_pred ccCCCcEEEEEE-CCCCCEEEEEe
Q 010324 439 KREGGDFVAACV-SPKGEWIYCVG 461 (513)
Q Consensus 439 ~~~~~~~~~~~~-s~~~~~l~~g~ 461 (513)
. ..+++++| .++.+.|++.+
T Consensus 254 ~---~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 254 V---KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred C---CCCccceEeCCCcCEEEEEe
Confidence 3 34667777 66666666555
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=0.0012 Score=57.30 Aligned_cols=241 Identities=16% Similarity=0.164 Sum_probs=145.6
Q ss_pred eEEEECCC-CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC-----CcEEE
Q 010324 217 ECARFSPD-GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD-----GKIKV 290 (513)
Q Consensus 217 ~~~~~s~~-g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----g~i~v 290 (513)
..++|+|. ..-++.+-.-|+..+++|.+..+....+.......+.||. .|||||.+|...-.| |.|-|
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEE
Confidence 45788884 5677888888888789999998888777777778888886 499999999877443 78999
Q ss_pred EEcCCc-ceeeecccccccCeEEEEEccCCCEEEEeeC------------------CCcEEEEecCCCceeeEec----c
Q 010324 291 WRIRSG-QCLRRLERAHSEGVTSLVFSRDGSQILSTSF------------------DSTARIHGLKSGKLLKEFR----G 347 (513)
Q Consensus 291 wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~----~ 347 (513)
||.+.+ +.+..+. .|.-....+.|.+||+.++.+.. .-++.+.|..+|+.+.+.. .
T Consensus 145 Yd~r~~fqrvgE~~-t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l 223 (366)
T COG3490 145 YDAREGFQRVGEFS-THGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL 223 (366)
T ss_pred Eecccccceecccc-cCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence 998754 3344554 67777888999999999887642 1234555655666554432 2
Q ss_pred cccceeEEEEccCCCEEEEEeCCCc-----EEEEeCCCCceeEeecCCCC-CCCCCceeeEEEecCCCCCeEEEEcCCCc
Q 010324 348 HSSYVNDAIFTNDGSRVVTASSDCT-----VKVWDLKSTDCLQTFKPPPP-LRGGDASVNSVHLFPKNPDHIVVCNKTSS 421 (513)
Q Consensus 348 ~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 421 (513)
+.-.|..++..+||...+.+-..|. -.+=-.+.++.+.-+..+.. .......+-+++.+....-..+++-..+.
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence 3445788888888765554432221 11111122222222221110 00112346677777666344455555567
Q ss_pred EEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 422 IYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 422 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
..+||.....+....... -+.-+.+...-+++.+.+|.+.++.
T Consensus 304 ~vi~da~tG~vv~~a~l~------daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 304 AVIWDAATGAVVSEAALP------DAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEEcCCCcEEeccccc------ccccceeccCceEEecCCceEEecc
Confidence 889999844433322211 1111223333355556678887774
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.05 E-value=0.0017 Score=60.87 Aligned_cols=213 Identities=19% Similarity=0.180 Sum_probs=128.4
Q ss_pred CcEEEEEcCCcceeeecccccccCeEEEEEcc---C----CCEEEEeeC----------CCcEEEEecCCC----ceeeE
Q 010324 286 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR---D----GSQILSTSF----------DSTARIHGLKSG----KLLKE 344 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~---~----~~~l~~~~~----------dg~i~i~d~~~~----~~~~~ 344 (513)
+.|++.|..+.+.+.++.......+.+++... + ..++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36888998888877777655555566554432 2 467777753 288999999874 12222
Q ss_pred e--cccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc
Q 010324 345 F--RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD-CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 421 (513)
Q Consensus 345 ~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 421 (513)
+ ....++|++++-- ++ +++++. .+.|.+|++...+ ....-... ....+.++.... +++++|+....
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~-----~~~~i~sl~~~~---~~I~vgD~~~s 150 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD-----SPFYITSLSVFK---NYILVGDAMKS 150 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE------BSSSEEEEEEET---TEEEEEESSSS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec-----ceEEEEEEeccc---cEEEEEEcccC
Confidence 2 2346789888876 33 455444 4789999998877 33322211 122556666553 68999998888
Q ss_pred EEEEEcc--CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC-------c--eeeEeeecc-cCCeEE
Q 010324 422 IYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS-------G--KLEHLMKVH-EKDVIG 489 (513)
Q Consensus 422 i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-------~--~~~~~~~~h-~~~v~~ 489 (513)
+.++..+ +..+..+.... ....++++.+-++++.++++..+|.+.++.... + ++......| ...|++
T Consensus 151 v~~~~~~~~~~~l~~va~d~-~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~ 229 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVARDY-QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNS 229 (321)
T ss_dssp EEEEEEETTTE-EEEEEEES-S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEE
T ss_pred EEEEEEEccCCEEEEEEecC-CCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccce
Confidence 8887554 45455444322 345577888876667999999999999998763 1 222222333 345777
Q ss_pred E---EEcCC--C------CEEEEEECCCeEEe
Q 010324 490 V---THHPH--R------NLLATYGEDCTMKL 510 (513)
Q Consensus 490 ~---~~~p~--~------~~l~s~~~dg~i~i 510 (513)
+ .+.|. + ..++.++.+|.|..
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 230 FRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 7 44452 2 24788889998864
No 364
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.05 E-value=3.1e-05 Score=62.95 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=83.4
Q ss_pred HHHHHHHhccCChhhHHhhhccc-----cCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCchhhhhccCCHHHHHHHH
Q 010324 44 IETFVADINSGRWDAILPQVAQL-----KLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLE 118 (513)
Q Consensus 44 ~~~~~~~i~~g~w~~~~~~l~~~-----~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~ 118 (513)
...++++|++|+++.|+++++.. ....+..|.++.|+|+|++..++..+|+...|+...+ ......+.++++.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~--~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSP--FNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh--hHHHHHHHHHHHH
Confidence 56789999999999999999876 3445778999999999999999999999999986532 1223445666666
Q ss_pred HHhcccCCCc--cccccCChHHHHHHHHHHHHhccc---ccC-ChhHHHHHHHHHH
Q 010324 119 HLLVRTYFDA--HEAYQDSTKERRRAQIAQAIAAEV---SVV-PPSRLMALIGQAL 168 (513)
Q Consensus 119 ~ll~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~---~~~-~~~rl~~l~~~~~ 168 (513)
.++....... ...+...-...++.+++..+...+ ... +.+.|..++++..
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~ 138 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGL 138 (145)
T ss_pred HHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 6665544433 122333223355666776665533 123 3466666666554
No 365
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.04 E-value=4.9e-06 Score=55.38 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=41.2
Q ss_pred cHHHHHHHhccCChhhHHhhhccccC-----ChhhHHHHHHHHHHHHHHcCCh
Q 010324 43 SIETFVADINSGRWDAILPQVAQLKL-----PRNKLEDLYEQIVLEMIELREL 90 (513)
Q Consensus 43 ~~~~~~~~i~~g~w~~~~~~l~~~~~-----~~~~~~~~~~~~~le~l~~~~~ 90 (513)
.+..++++|++|+|+.|+++++.... .....|.|++|+|+|+++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence 46789999999999999999988743 3377999999999999998764
No 366
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=0.0022 Score=56.21 Aligned_cols=174 Identities=9% Similarity=0.137 Sum_probs=123.8
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 342 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 342 (513)
-...|.++.|+|+.+.|++......-.||=...|+.+.++....-...-.+.+..+|.+.++--.++.+.++.+.....+
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 44559999999999999999888888888778899998887545556677888888887777778888888877655322
Q ss_pred eEe----------cccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCC----CCceeeEEEecCC
Q 010324 343 KEF----------RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRG----GDASVNSVHLFPK 408 (513)
Q Consensus 343 ~~~----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~ 408 (513)
... ...+...-.++|+|....|+.+-+-.-+.||.+......-.......... .-..+.++.+.+.
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCC
Confidence 211 11255678899999999999988888888887663321111110000000 1235677888888
Q ss_pred CCCeEEEEcCCCcEEEEEccCeEEEEee
Q 010324 409 NPDHIVVCNKTSSIYIMTLQGQVVKSFS 436 (513)
Q Consensus 409 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 436 (513)
.+.+++.+..++.+.-.|..|..+..+.
T Consensus 244 ~~~LLVLS~ESr~l~Evd~~G~~~~~ls 271 (316)
T COG3204 244 TNSLLVLSDESRRLLEVDLSGEVIELLS 271 (316)
T ss_pred CCcEEEEecCCceEEEEecCCCeeeeEE
Confidence 8789999999999999999987655444
No 367
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.01 E-value=0.013 Score=54.47 Aligned_cols=274 Identities=12% Similarity=0.123 Sum_probs=131.2
Q ss_pred EECCCCCEEEEEec-CCeEE-EEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc
Q 010324 220 RFSPDGQFLVSCSF-DGFIE-VVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ 297 (513)
Q Consensus 220 ~~s~~g~~la~g~~-dg~i~-~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~ 297 (513)
+|.+||+.|+.++. ||.-. +..|+.+++...-.... ........++|+++.++....+..++-.|+.+.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~--------g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP--------GDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---------B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC--------CCCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence 67889977766554 54433 35677777654322211 1112245677888888777666789999999987
Q ss_pred eeeecccccccCeEEEEEc--cCCCEEEEee----------------------CCCcEEEEecCCCceeeEeccccccee
Q 010324 298 CLRRLERAHSEGVTSLVFS--RDGSQILSTS----------------------FDSTARIHGLKSGKLLKEFRGHSSYVN 353 (513)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~----------------------~dg~i~i~d~~~~~~~~~~~~~~~~v~ 353 (513)
....+. .....+-...|. .|+..++-.- ....|.-.|+.+|+....+. ....+.
T Consensus 114 ~~~vy~-~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlg 191 (386)
T PF14583_consen 114 ERVVYE-VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLG 191 (386)
T ss_dssp EEEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EE
T ss_pred EEEEEE-CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCcccc
Confidence 654443 344445445664 3555544321 11235666777777544444 455678
Q ss_pred EEEEccCCCEEEEEeCCC----c-EEEEeCCC-CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC----CCcEE
Q 010324 354 DAIFTNDGSRVVTASSDC----T-VKVWDLKS-TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK----TSSIY 423 (513)
Q Consensus 354 ~~~~~~~~~~l~~~~~dg----~-i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----~~~i~ 423 (513)
.+.|+|....+++-|..| . -+||-+++ +.....+... .....+..=-|.|++..+...+.. +..|.
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~----~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR----MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC----CCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 889999666555554332 1 25564443 2222333211 123455556688888666665442 22455
Q ss_pred EEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc----------------eEEEEECCCceeeEeee------
Q 010324 424 IMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR----------------NLYCFSHQSGKLEHLMK------ 481 (513)
Q Consensus 424 i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg----------------~i~iwd~~~~~~~~~~~------ 481 (513)
-+|........+... ........++||++++-=+.|. -|++++...+.......
T Consensus 268 ~~d~~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~ 343 (386)
T PF14583_consen 268 GYDPDTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWK 343 (386)
T ss_dssp EE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE------
T ss_pred eeCCCCCCceEEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcce
Confidence 556653332332221 1244566688998776544432 56778887766432211
Q ss_pred ---cccC-CeEEEEEcCCCCEEE-EEECCCeEEec
Q 010324 482 ---VHEK-DVIGVTHHPHRNLLA-TYGEDCTMKLW 511 (513)
Q Consensus 482 ---~h~~-~v~~~~~~p~~~~l~-s~~~dg~i~iW 511 (513)
++.. .=-...|+||++.++ ++...|...||
T Consensus 344 v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 344 VLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp -BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred eecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 1111 124688999998665 55567776665
No 368
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.98 E-value=0.0043 Score=54.72 Aligned_cols=202 Identities=14% Similarity=0.190 Sum_probs=109.5
Q ss_pred ccccCeEEEEEccCCC-EEEEeeCCCcEEEEecCCCceeeEeccc-ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 010324 305 AHSEGVTSLVFSRDGS-QILSTSFDSTARIHGLKSGKLLKEFRGH-SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 382 (513)
Q Consensus 305 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 382 (513)
+-...++.++|+|+.+ .+++....+.|..++. +|+.+.++.-. .+..-.+++..++.++++.-.++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 3445699999999766 4556666788888886 68888777543 3457888998888777766668999999884321
Q ss_pred ------eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC----eEEEEeec-----CccCCCcEEE
Q 010324 383 ------CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG----QVVKSFSS-----GKREGGDFVA 447 (513)
Q Consensus 383 ------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----~~~~~~~~-----~~~~~~~~~~ 447 (513)
....+..... ..+...+-.++|.|.+..++++ -...-..++.+++ ........ .......+..
T Consensus 98 ~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 98 TSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 1122222211 2345678899999988555554 4444455555543 11111110 1112334678
Q ss_pred EEECCCC-CEEEEEecCceEEEEECCCceeeEeeeccc---------CCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 448 ACVSPKG-EWIYCVGEDRNLYCFSHQSGKLEHLMKVHE---------KDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 448 ~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
++++|.. .+++....+..|..+| .+|+++..+.-.. ...-.|+|.++|++.+++ .-+..+++
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 8888865 4555666788899999 6777766554222 246789999999766654 55555443
No 369
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.97 E-value=0.0083 Score=57.90 Aligned_cols=190 Identities=15% Similarity=0.131 Sum_probs=99.4
Q ss_pred ccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccc-cccccccCCccEEEEEEcCCCCEEE
Q 010324 202 TTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQ-ADETFMMHDETVLCIEFSRDSEMLA 280 (513)
Q Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~ 280 (513)
..+..++...+ +.|.++.|+.+.+ |++-..||.++ ++|+.... .+... ......-....+....+..+|-.+.
T Consensus 70 G~ll~~i~w~~-~~iv~~~wt~~e~-LvvV~~dG~v~-vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL 143 (410)
T PF04841_consen 70 GKLLSSIPWDS-GRIVGMGWTDDEE-LVVVQSDGTVR-VYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL 143 (410)
T ss_pred CCEeEEEEECC-CCEEEEEECCCCe-EEEEEcCCEEE-EEeCCCce---eechhhhccccCcccccccccccCCCCEEEE
Confidence 34455666666 8999999998654 55666899997 99986333 11111 1111111223333444444563333
Q ss_pred EEeCCCcEEEEEcCCcc-eeeeccc--c-----ccc-CeEE-EEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccccc
Q 010324 281 SGSQDGKIKVWRIRSGQ-CLRRLER--A-----HSE-GVTS-LVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS 350 (513)
Q Consensus 281 s~~~dg~i~vwd~~~~~-~~~~~~~--~-----~~~-~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 350 (513)
+ .++.+.+.+-.... ..+.... . +.. .... ..++.+....+....++.+.+.+-...+. +. ..+
T Consensus 144 t--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~ 217 (410)
T PF04841_consen 144 T--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDG 217 (410)
T ss_pred C--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCC
Confidence 3 34444444322211 1111110 0 000 0000 22333444444555555555444322211 11 245
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC
Q 010324 351 YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK 408 (513)
Q Consensus 351 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (513)
++..++.||+|++++.-..+|.+.+.+..-.+....+... .......+.|..+
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-----~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-----SKSPPKQMAWCGN 270 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC-----cCCCCcEEEEECC
Confidence 7999999999999999999999999887655555554422 2334556666654
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.7e-05 Score=73.38 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=77.1
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEE-EEEEcCCCCEEEEEeCCCcEEEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVL-CIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
...|.-+.|+|.-..+|++..+|.+ ++..++ -+.+..++. |...++ +++|.|||+.||.|-.||+|++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gel-li~R~n-~qRlwtip~--------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGEL-LIHRLN-WQRLWTIPI--------PGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcE-EEEEec-cceeEeccC--------CCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 3457789999999999999999998 588877 333444432 555666 99999999999999999999999
Q ss_pred EcCCcceeeecccccccCeEEEEEcc
Q 010324 292 RIRSGQCLRRLERAHSEGVTSLVFSR 317 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~v~~~~~~~ 317 (513)
|+++|..+..........|.++.|.+
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 99999988775445677888888874
No 371
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.95 E-value=0.011 Score=51.55 Aligned_cols=264 Identities=15% Similarity=0.155 Sum_probs=140.8
Q ss_pred ECCCCCE-EEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC-CCEEEEEeCCC-cEEEEEcCCcc
Q 010324 221 FSPDGQF-LVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-SEMLASGSQDG-KIKVWRIRSGQ 297 (513)
Q Consensus 221 ~s~~g~~-la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg-~i~vwd~~~~~ 297 (513)
..+||++ .++.+.+|.+ +..+. -...-..|+|+|. ..-++.+-.-| ...++|....+
T Consensus 43 ~~~dgs~g~a~~~eaGk~--v~~~~------------------lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~ 102 (366)
T COG3490 43 DARDGSFGAATLSEAGKI--VFATA------------------LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQ 102 (366)
T ss_pred eccCCceeEEEEccCCce--eeeee------------------cccccCCeecCCCCcceEEEEecCCceEEEECCCCCc
Confidence 3457765 5566777877 33221 1223335677774 33455555544 35678888777
Q ss_pred eeeecccccc-cCeEEEEEccCCCEEEEeeCC-----CcEEEEecCCC-ceeeEecccccceeEEEEccCCCEEEEEeCC
Q 010324 298 CLRRLERAHS-EGVTSLVFSRDGSQILSTSFD-----STARIHGLKSG-KLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 370 (513)
Q Consensus 298 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 370 (513)
...++..... ...-.-.|+|||.+|+..-.| |.|-+||.+.+ +.+.++..|.-....+.|.+||+.++.+...
T Consensus 103 ~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGG 182 (366)
T COG3490 103 EPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGG 182 (366)
T ss_pred CcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCc
Confidence 6555431111 122234699999999876543 78999999755 4567788888888899999999988876431
Q ss_pred ------------------CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc------EEEEE
Q 010324 371 ------------------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS------IYIMT 426 (513)
Q Consensus 371 ------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~------i~i~d 426 (513)
-++.+.|..+|+.+.+...+.. -+..++..+...+++ ...+.+-..|. +.-.-
T Consensus 183 IethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~--l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~ 259 (366)
T COG3490 183 IETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS--LRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHF 259 (366)
T ss_pred eecccccCccccchhhcCccEEEEeccccchhhhccCchh--hhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeec
Confidence 1233334444444333322211 122344555554443 22222221111 00000
Q ss_pred ccCeEEEEeecCc----cCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEE
Q 010324 427 LQGQVVKSFSSGK----REGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLAT 501 (513)
Q Consensus 427 ~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 501 (513)
..++.+..+.... ....++-+++.+.+..+++..+ ..+...+||..+|..+..-.-. .+..++- ...-++.
T Consensus 260 ~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~--~~~gf~v 335 (366)
T COG3490 260 RKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAA--AKGGFAV 335 (366)
T ss_pred cCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--cccccee--ccCceEE
Confidence 1122222221111 0123456777776666676666 4556778999999877554321 1222322 2333455
Q ss_pred EECCCeEEec
Q 010324 502 YGEDCTMKLW 511 (513)
Q Consensus 502 ~~~dg~i~iW 511 (513)
.+.+|.+.++
T Consensus 336 ssg~G~~~~~ 345 (366)
T COG3490 336 SSGQGRIIFY 345 (366)
T ss_pred ecCCceEEec
Confidence 5556777643
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.94 E-value=0.0056 Score=56.02 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=133.8
Q ss_pred EEcCCCCEEEEE-eCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecc--
Q 010324 271 EFSRDSEMLASG-SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG-- 347 (513)
Q Consensus 271 ~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 347 (513)
.|.++...|+-+ -..+.|.-|+..+++.. .+. ....+.++.....+..|+++.. -+.+++..++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~--~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP--SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE--CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 467766644444 45778999998776532 332 3444455555545555555542 345666655554332221
Q ss_pred ---cccceeEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeE
Q 010324 348 ---HSSYVNDAIFTNDGSRVVTASS-----------DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 413 (513)
Q Consensus 348 ---~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 413 (513)
.....+.....|+|.+.++... -|.++.+|. .+.....+. .+-...+.++|+|++..++
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~------~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD------DDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec------CcEEecCceEECCCCCEEE
Confidence 2345778889999886665443 133444443 344333332 2234568899999997666
Q ss_pred EEEcCCCcEEEEEccC---eEE--EEeecCccCCCcEEEEEECCCCCEEEEEecCc-eEEEEECCCceeeEeeecccCCe
Q 010324 414 VVCNKTSSIYIMTLQG---QVV--KSFSSGKREGGDFVAACVSPKGEWIYCVGEDR-NLYCFSHQSGKLEHLMKVHEKDV 487 (513)
Q Consensus 414 ~~~~~~~~i~i~d~~~---~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~h~~~v 487 (513)
++=+..+.|+-+++.. ..- ..........+..-.++...+|.+.+++..+| .|.+|+.. |+++..+..+...+
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~ 257 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRP 257 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCC
Confidence 6667778999988761 111 11122222344556788888998876555554 99999988 99998888877888
Q ss_pred EEEEEcC-CCCEE-EEEEC
Q 010324 488 IGVTHHP-HRNLL-ATYGE 504 (513)
Q Consensus 488 ~~~~~~p-~~~~l-~s~~~ 504 (513)
++++|-- +.+.| +|+..
T Consensus 258 t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 258 TNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred ccceEeCCCcCEEEEEecC
Confidence 8888854 34444 44433
No 373
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.87 E-value=5e-05 Score=45.12 Aligned_cols=39 Identities=36% Similarity=0.584 Sum_probs=34.5
Q ss_pred ceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 474 GKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 474 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+++...+..|...|.++.|+|++.++++++.||.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778899999999999999999999999999997
No 374
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.84 E-value=0.0037 Score=59.31 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=62.2
Q ss_pred EEEECCCCCEEEEEecCCeEEEE---Eeccc-cccccccccccccccccCC-ccEEEEEEcC-----------CCCEEEE
Q 010324 218 CARFSPDGQFLVSCSFDGFIEVV---WDYLS-GKLKKDLQYQADETFMMHD-ETVLCIEFSR-----------DSEMLAS 281 (513)
Q Consensus 218 ~~~~s~~g~~la~g~~dg~i~~i---wd~~~-~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~-----------~~~~l~s 281 (513)
+++.+|+|+.||.|..+..+ ++ |+... +.....+.......+.... ..|+++.|-| |...++.
T Consensus 6 ~isls~~~d~laiA~~~r~v-il~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V 84 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLV-ILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV 84 (415)
T ss_pred eEEecCCCCEEEEEcCCEEE-EEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence 46889999999999888877 34 54322 2111111111111111111 5677766643 4578999
Q ss_pred EeCCCcEEEEEcCCcceeeecccccccCeEEEEEcc
Q 010324 282 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317 (513)
Q Consensus 282 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 317 (513)
|..+|.|++|. ++|..+..-. -|..+|..+.+..
T Consensus 85 G~ssG~vrfyt-e~G~LL~~Q~-~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 85 GTSSGYVRFYT-ENGVLLLSQL-LHEEPVLKIKCRS 118 (415)
T ss_pred EecccEEEEEe-ccchHHHHHh-cCccceEEEEecc
Confidence 99999999998 5777665554 6889999988854
No 375
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0001 Score=70.56 Aligned_cols=95 Identities=23% Similarity=0.345 Sum_probs=79.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeE-EEEEccCCCEEEEeeCCCcEEEEecCCCce
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT-SLVFSRDGSQILSTSFDSTARIHGLKSGKL 341 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 341 (513)
-...|.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++. -++..++ +++|.|||+.|++|-.||+|++.|+.++..
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc-CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 34568889999999999999999999999988 77777876 4556666 999999999999999999999999999988
Q ss_pred eeEecc-cccceeEEEEcc
Q 010324 342 LKEFRG-HSSYVNDAIFTN 359 (513)
Q Consensus 342 ~~~~~~-~~~~v~~~~~~~ 359 (513)
+..+.. ....|.++.|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 776322 345688888874
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.82 E-value=0.0023 Score=64.25 Aligned_cols=149 Identities=16% Similarity=0.203 Sum_probs=88.5
Q ss_pred CceeEEEECCCCCEEEEEe------cCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC--
Q 010324 214 SHAECARFSPDGQFLVSCS------FDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD-- 285 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~------~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-- 285 (513)
..+...++||+|+.+|... .|..-+ +|-...+.....+. .......-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~-Lwv~~~gg~~~~lt---------~g~~~t~PsWspDG~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASS-LWVGPLGGVAVQVL---------EGHSLTRPSWSLDADAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceE-EEEEeCCCcceeee---------cCCCCCCceECCCCCceEEEecCcc
Confidence 4578899999999988765 244433 55443222111111 12247788999999988877532
Q ss_pred ----------CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEE---EecCCCce-e---eEec-c
Q 010324 286 ----------GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARI---HGLKSGKL-L---KEFR-G 347 (513)
Q Consensus 286 ----------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~-~---~~~~-~ 347 (513)
+.+.+.++..+.... .....|..+.|+|||..++... +|.|++ -....|.. + ..+. .
T Consensus 420 ~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 420 VVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred eEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 223333444333222 2345799999999999988776 577777 44344431 1 1122 2
Q ss_pred cccceeEEEEccCCCEEEEEeCCCcEEEEeC
Q 010324 348 HSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 378 (513)
Q Consensus 348 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 378 (513)
....+.++.|.+++..+ ++..++.-.+|.+
T Consensus 495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred cCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 23346889999998854 5555554445543
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.81 E-value=0.0026 Score=63.97 Aligned_cols=190 Identities=14% Similarity=0.167 Sum_probs=107.3
Q ss_pred CccEEEEEEcCCCCEEEEEe------CCC--cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC-------
Q 010324 264 DETVLCIEFSRDSEMLASGS------QDG--KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD------- 328 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------- 328 (513)
...+.+.+++|+|+.++... .|+ .+.+++. .+.. ..+..+ ...+.-.|+|||..+++....
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence 34678999999999888765 243 4555554 2222 333322 247889999998877776532
Q ss_pred -----CcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEE---EeCCCCceeEeecCCCCCC-CCCce
Q 010324 329 -----STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV---WDLKSTDCLQTFKPPPPLR-GGDAS 399 (513)
Q Consensus 329 -----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~-~~~~~ 399 (513)
+.+.+.++..+.... ...+.|..+.|+|||.+++... +|.|.+ -....|. ..+..+..+. +....
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDT 498 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCc
Confidence 233333443333222 2345799999999999888776 477776 4433443 2222222111 22334
Q ss_pred eeEEEecCCCCCeEEEEcCCCc--EEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEE
Q 010324 400 VNSVHLFPKNPDHIVVCNKTSS--IYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYC 468 (513)
Q Consensus 400 v~~~~~~~~~~~~l~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 468 (513)
+.++.|.+++ .+ +++..++. ++..+++|.....+.. ......+..++-+++ -++....+|.+.+
T Consensus 499 ~~~l~W~~~~-~L-~V~~~~~~~~v~~v~vDG~~~~~~~~-~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 499 AVSLDWRTGD-SL-VVGRSDPEHPVWYVNLDGSNSDALPS-RNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cccceEecCC-EE-EEEecCCCCceEEEecCCccccccCC-CCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 5788999887 34 44444444 4444455554333221 112344666666653 4666666664444
No 378
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.80 E-value=0.018 Score=52.60 Aligned_cols=216 Identities=13% Similarity=0.184 Sum_probs=121.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe---------
Q 010324 275 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF--------- 345 (513)
Q Consensus 275 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------- 345 (513)
.++.|+.|+.+| +.+++.........+. ....|..+...|+-+.+++-+ |+.++++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 577899999888 9999984333333332 344499999999888877776 599999998755433311
Q ss_pred -----cccccceeEEE--EccCCCEEEEEeCCCcEEEEeCCCC-----ceeEeecCCCCCCCCCceeeEEEecCCCCCeE
Q 010324 346 -----RGHSSYVNDAI--FTNDGSRVVTASSDCTVKVWDLKST-----DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 413 (513)
Q Consensus 346 -----~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 413 (513)
-.....+...+ -...+...++.....+|.+|..... ...+.+.. ...+.++.|.+ +.+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-------p~~~~~i~~~~---~~i 151 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-------PDPPSSIAFLG---NKI 151 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-------CCCcEEEEEeC---CEE
Confidence 01122344444 1223344444444558988887653 23344432 35778888883 566
Q ss_pred EEEcCCCcEEEEEccCeEEEEeecCccC---------CCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeE--eeec
Q 010324 414 VVCNKTSSIYIMTLQGQVVKSFSSGKRE---------GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEH--LMKV 482 (513)
Q Consensus 414 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~ 482 (513)
+++..+ ...+.|+.......+...... ......+.--+++.+|++. +..-.+.|. .|++.. .+.-
T Consensus 152 ~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W 227 (275)
T PF00780_consen 152 CVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW 227 (275)
T ss_pred EEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcC-CCCcCcccEEEc
Confidence 666644 477888874433433321111 1122233333445666654 233333343 443332 2222
Q ss_pred ccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 483 HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 483 h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
...+.++++ ..++|+..+.+ .|-||+
T Consensus 228 -~~~p~~~~~--~~pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 228 -SSAPQSVAY--SSPYLIAFSSN-SIEVRS 253 (275)
T ss_pred -CCchhEEEE--ECCEEEEECCC-EEEEEE
Confidence 235556666 34577766654 488886
No 379
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.80 E-value=0.016 Score=50.85 Aligned_cols=206 Identities=13% Similarity=0.128 Sum_probs=125.1
Q ss_pred ceeeeeccccCceeEEEECCCCCEEEEEecCC--eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEE
Q 010324 204 LSHTIKFGTKSHAECARFSPDGQFLVSCSFDG--FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 281 (513)
Q Consensus 204 ~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg--~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 281 (513)
...+.+.....-...+.|..+|.++-+.+.-| .++ .+|+.+++........... ... .++.. +++...-
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~-~~d~~tg~~~~~~~l~~~~----FgE---Git~~-~d~l~qL 105 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLR-KVDLETGKVLQSVPLPPRY----FGE---GITIL-GDKLYQL 105 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEE-EEETTTSSEEEEEE-TTT------EE---EEEEE-TTEEEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEE-EEECCCCcEEEEEECCccc----cce---eEEEE-CCEEEEE
Confidence 34444333344456788878888888887766 676 8999998876554432211 111 22222 2233333
Q ss_pred EeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccc-----ccceeEEE
Q 010324 282 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH-----SSYVNDAI 356 (513)
Q Consensus 282 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~v~~~~ 356 (513)
.-.++...+||..+-+.+.++.. ...=+.++ .|+..|+.+.....++++|..+.+...++... -..++-+.
T Consensus 106 TWk~~~~f~yd~~tl~~~~~~~y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 106 TWKEGTGFVYDPNTLKKIGTFPY--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp ESSSSEEEEEETTTTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred EecCCeEEEEccccceEEEEEec--CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 44688999999999988888863 34556666 47788888888889999999888777766532 22456677
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCC---------CCCCCCceeeEEEecCCCCCeEEEEcCCCcEE
Q 010324 357 FTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP---------PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 423 (513)
Q Consensus 357 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 423 (513)
|. +|...+-.=....|...|..+|+....+.... .......-.+.|++.|..+.++++|=.=..++
T Consensus 182 ~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~ly 256 (264)
T PF05096_consen 182 YI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLY 256 (264)
T ss_dssp EE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEE
T ss_pred EE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceE
Confidence 76 56666656667778889999998877653211 11122456899999999877777775444443
No 380
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.79 E-value=0.0029 Score=47.12 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=70.5
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee
Q 010324 267 VLCIEFSR---DS-EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 342 (513)
Q Consensus 267 v~~l~~~~---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 342 (513)
|++|++.. +| +.|++|+.|..|++|+- ...+..+. ....|++++-... ..++.+..+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence 56677665 22 58999999999999983 35566664 5677888887765 67999999999999975 3444
Q ss_pred eEecccccceeEEEEcc-C--C-CEEEEEeCCCcEE
Q 010324 343 KEFRGHSSYVNDAIFTN-D--G-SRVVTASSDCTVK 374 (513)
Q Consensus 343 ~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~dg~i~ 374 (513)
...+... .++++++.. + | .-|++|-.+|.|-
T Consensus 75 WRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4555333 366666543 3 2 2688888888764
No 381
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=4.7e-05 Score=63.67 Aligned_cols=139 Identities=11% Similarity=0.112 Sum_probs=88.7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeEEEEeecCcc
Q 010324 363 RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKR 440 (513)
Q Consensus 363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~ 440 (513)
.+...+.||.|+-++++..+....-.. .+....-.+.....+++|+.+|.|++|... +.....+....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~---------~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~- 101 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSER---------FIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE- 101 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhh---------hhhcceeecccCceEEeecccceEEEecCCccchHHHhhhccc-
Confidence 344556778888887764332111110 111111122334789999999999999887 22222222211
Q ss_pred CCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeeccc-CCeEEEEEcCCCCEEEEE--ECCCeEEecc
Q 010324 441 EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHE-KDVIGVTHHPHRNLLATY--GEDCTMKLWK 512 (513)
Q Consensus 441 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~--~~dg~i~iWd 512 (513)
......+....++.+.++++.||.|+.|++...+.+.....|. .++.....+..+.+++.+ |.|..++.|+
T Consensus 102 -e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 102 -ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred -ccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence 1111223334456688999999999999999999888888887 667776666677788887 8888888887
No 382
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.71 E-value=0.00087 Score=68.30 Aligned_cols=136 Identities=12% Similarity=0.160 Sum_probs=93.6
Q ss_pred CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecC----CCCCeEEEEcCCCcEEEEEcc--CeE-EEEeecCccC
Q 010324 369 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP----KNPDHIVVCNKTSSIYIMTLQ--GQV-VKSFSSGKRE 441 (513)
Q Consensus 369 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~~~~i~i~d~~--~~~-~~~~~~~~~~ 441 (513)
....|+-.|+..|+.+..+.... ..++..++-.. -.+...++|-.+..+..||.+ +.. +......-..
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~-----~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHD-----DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCC-----CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 45789999999999999988543 22355544322 123567888889999999998 322 2111111123
Q ss_pred CCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 442 GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 442 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
.....|++-+.+| +||+|+.+|.|++||.-..+....+++-..+|.+|..+.||+++++.+. ..+.++
T Consensus 577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred CCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEE
Confidence 4456677777666 7999999999999995443444556677889999999999998876653 345444
No 383
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.66 E-value=0.0017 Score=66.22 Aligned_cols=146 Identities=16% Similarity=0.179 Sum_probs=95.9
Q ss_pred CCEEEEe-eCCCcEEEEecCCCceeeEecccccc-eeEEEEcc-----CCCEEEEEeCCCcEEEEeCCCCc-eeEeecCC
Q 010324 319 GSQILST-SFDSTARIHGLKSGKLLKEFRGHSSY-VNDAIFTN-----DGSRVVTASSDCTVKVWDLKSTD-CLQTFKPP 390 (513)
Q Consensus 319 ~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~ 390 (513)
.++|+.. .....|+-.|+..|+.+..+..+... |.+++-.. .....+.|-.+..+..||.|-.. .+..-..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~- 571 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS- 571 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc-
Confidence 3344433 34678999999999999999987653 55544321 12345677778889999998643 1111011
Q ss_pred CCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 391 PPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
..........|++-.. ...+++|+.+|.|++||--|..-++... .-+.+|+.++++.||++|++.+ +..+.+++
T Consensus 572 -k~Y~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 572 -KQYSSKNNFSCFATTE--DGYIAVGSNKGDIRLYDRLGKRAKTALP--GLGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred -cccccCCCceEEEecC--CceEEEEeCCCcEEeecccchhhhhcCC--CCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 0112233455555444 4799999999999999966644333332 3467899999999999998877 55666666
Q ss_pred C
Q 010324 471 H 471 (513)
Q Consensus 471 ~ 471 (513)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 4
No 384
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.59 E-value=0.086 Score=51.50 Aligned_cols=221 Identities=18% Similarity=0.199 Sum_probs=113.6
Q ss_pred cEEEEEEcCCCCEEEEE-eCCC----cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCC-----------
Q 010324 266 TVLCIEFSRDSEMLASG-SQDG----KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS----------- 329 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------- 329 (513)
.+...+++|+|+++|.+ +..| .++++|+.+|+.+.... .......+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 44578899999998876 3334 59999999997765432 112223499999998887665443
Q ss_pred cEEEEecCCCcee--eEecccccc--eeEEEEccCCCEEEEEeCC----CcEEEEeCCCC----ceeEeecCCCCCCCCC
Q 010324 330 TARIHGLKSGKLL--KEFRGHSSY--VNDAIFTNDGSRVVTASSD----CTVKVWDLKST----DCLQTFKPPPPLRGGD 397 (513)
Q Consensus 330 ~i~i~d~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~----~~~~~~~~~~~~~~~~ 397 (513)
.|+.|.+.++..- ..+...... ...+..++|+++++..... ..+.+.|+..+ .....+... ..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~-----~~ 277 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR-----ED 277 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES-----SS
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC-----CC
Confidence 3788888766432 333333222 5678899999987764432 34777788764 112222211 11
Q ss_pred ceeeEEEecCCCCCeEEEEcC---CCcEEEEEccCeE---EEEeecCccCCCcEEEEEECCCCCEEEEEe-cCc--eEEE
Q 010324 398 ASVNSVHLFPKNPDHIVVCNK---TSSIYIMTLQGQV---VKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDR--NLYC 468 (513)
Q Consensus 398 ~~v~~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg--~i~i 468 (513)
+....+... +..+++.... .+.|...++.... .............+..+. ..+.+|+... .++ .|++
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEEE
Confidence 222222222 3234444432 2456666665221 121222111112233333 3344554444 444 5888
Q ss_pred EECCCceeeEeeec-ccCCeEEEEEcCCCC
Q 010324 469 FSHQSGKLEHLMKV-HEKDVIGVTHHPHRN 497 (513)
Q Consensus 469 wd~~~~~~~~~~~~-h~~~v~~~~~~p~~~ 497 (513)
+++..+.....+.. -.+.|..+...++++
T Consensus 354 ~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 354 YDLDDGKESREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EETT-TEEEEEEESSSSSEEEEEES-TT-S
T ss_pred EECCCCcEEeeecCCcceEEeccCCCCCCC
Confidence 99883343333332 334456665555444
No 385
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.52 E-value=0.084 Score=49.67 Aligned_cols=196 Identities=13% Similarity=0.164 Sum_probs=99.6
Q ss_pred CCCEEEEEe-CCCcEEEEEcCC----cceeeeccc------ccccCeEEEEEccCCCEEEEee--C----CCcEEEEecC
Q 010324 275 DSEMLASGS-QDGKIKVWRIRS----GQCLRRLER------AHSEGVTSLVFSRDGSQILSTS--F----DSTARIHGLK 337 (513)
Q Consensus 275 ~~~~l~s~~-~dg~i~vwd~~~----~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~--~----dg~i~i~d~~ 337 (513)
+.++|+..+ .++.|.|.|+.+ .+..+.+.. ..-.....+...|+|+.++++- . -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 678999999874 233344331 1112344556668998888752 2 2568888888
Q ss_pred CCceeeEeccc---ccceeEEEEccCCCEEEEEeC--------------------CCcEEEEeCCCCceeEeecCCCCCC
Q 010324 338 SGKLLKEFRGH---SSYVNDAIFTNDGSRVVTASS--------------------DCTVKVWDLKSTDCLQTFKPPPPLR 394 (513)
Q Consensus 338 ~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~ 394 (513)
+.+........ ...-.++.|.|..+.++++.. ..++.+||+.+.+.++++....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~--- 242 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE--- 242 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T---
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC---
Confidence 77777766543 234567778888888887652 3579999999999999887542
Q ss_pred CCCceeeEEEec--CCCCCeEEEEcCCCcEEEEEcc--Ce----EEEEeecCc-------c-------CCCcEEEEEECC
Q 010324 395 GGDASVNSVHLF--PKNPDHIVVCNKTSSIYIMTLQ--GQ----VVKSFSSGK-------R-------EGGDFVAACVSP 452 (513)
Q Consensus 395 ~~~~~v~~~~~~--~~~~~~l~~~~~~~~i~i~d~~--~~----~~~~~~~~~-------~-------~~~~~~~~~~s~ 452 (513)
....+..+.|. |....-++.+.-.++|..|--. +. .+..+.... . ...-++.+.+|.
T Consensus 243 -~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl 321 (461)
T PF05694_consen 243 -EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL 321 (461)
T ss_dssp -TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred -CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence 22345556654 4444456666666677666542 21 122221110 0 023467899999
Q ss_pred CCCEEEEEe-cCceEEEEECCCc
Q 010324 453 KGEWIYCVG-EDRNLYCFSHQSG 474 (513)
Q Consensus 453 ~~~~l~~g~-~dg~i~iwd~~~~ 474 (513)
|.++|+..+ ..|.|+.||+...
T Consensus 322 DDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-SST
T ss_pred CCCEEEEEcccCCcEEEEecCCC
Confidence 999999888 7999999999764
No 386
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.51 E-value=0.034 Score=47.10 Aligned_cols=207 Identities=9% Similarity=0.086 Sum_probs=115.3
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCC-C-EEEEe-eCCCcEEEEecC--CCceeeEe---c--c
Q 010324 278 MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDG-S-QILST-SFDSTARIHGLK--SGKLLKEF---R--G 347 (513)
Q Consensus 278 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~l~~~-~~dg~i~i~d~~--~~~~~~~~---~--~ 347 (513)
++.+--..|.|.-||+.+.+..+.-. ...+..++.+--.+ . .++++ +..-.|.-||-. ......++ + .
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~i--e~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKI--EGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEE--ecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 34444445677779888765433321 12223334332222 1 23333 222234446622 22222221 1 1
Q ss_pred cccceeEEEEccCCCEEEEEeC---------CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC
Q 010324 348 HSSYVNDAIFTNDGSRVVTASS---------DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK 418 (513)
Q Consensus 348 ~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 418 (513)
...+.++-..+|+|++++-.-. .|.++.|-... + +..+. ..-.-.+.++|..+...+.++-+.
T Consensus 107 kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~-v~~i~------~~v~IsNgl~Wd~d~K~fY~iDsl 178 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-Q-VELIW------NCVGISNGLAWDSDAKKFYYIDSL 178 (310)
T ss_pred HhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC-C-ceeee------hhccCCccccccccCcEEEEEccC
Confidence 2445667778999998442222 23344443321 1 11110 112334678888877777778888
Q ss_pred CCcEEEEEcc--Ce------EEEEeecCcc-CCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEE
Q 010324 419 TSSIYIMTLQ--GQ------VVKSFSSGKR-EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG 489 (513)
Q Consensus 419 ~~~i~i~d~~--~~------~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 489 (513)
+-.|.-||.+ +. .+-.+..... .....-.+++..+|.+.++.-..|+|...|..+|+.+..+.-....|++
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 8888888854 21 1111211111 1112235677778888888889999999999999999999988999999
Q ss_pred EEEcC
Q 010324 490 VTHHP 494 (513)
Q Consensus 490 ~~~~p 494 (513)
++|--
T Consensus 259 ccFgG 263 (310)
T KOG4499|consen 259 CCFGG 263 (310)
T ss_pred EEecC
Confidence 99964
No 387
>PHA02713 hypothetical protein; Provisional
Probab=97.51 E-value=0.015 Score=58.61 Aligned_cols=184 Identities=8% Similarity=0.087 Sum_probs=94.2
Q ss_pred CCCEEEEeeCC------CcEEEEecCCCceeeEecccc-cceeEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceeE
Q 010324 318 DGSQILSTSFD------STARIHGLKSGKLLKEFRGHS-SYVNDAIFTNDGSRVVTASSDC-----TVKVWDLKSTDCLQ 385 (513)
Q Consensus 318 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~ 385 (513)
++...++|+.+ ..+..||+.+.... ....-. ..-......-+|+..+.||.++ .+..||..+.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 56677777754 34778888766432 121111 1111112233577778887654 47889988654221
Q ss_pred eecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC-----------------------CcEEEEEccCeEEEEeecCccCC
Q 010324 386 TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-----------------------SSIYIMTLQGQVVKSFSSGKREG 442 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-----------------------~~i~i~d~~~~~~~~~~~~~~~~ 442 (513)
.-..+... .....+.. ++.+.+.|+.+ ..+..||................
T Consensus 382 ~~~mp~~r----~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r 454 (557)
T PHA02713 382 LPDMPIAL----SSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT 454 (557)
T ss_pred CCCCCccc----ccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc
Confidence 11111111 11111121 33666666644 24677777755444433322111
Q ss_pred CcEEEEEECCCCCEEEEEecC------ceEEEEECCC-ce--eeEeeecccCCeEEEEEcCCCCEEEEEECCC--eEEec
Q 010324 443 GDFVAACVSPKGEWIYCVGED------RNLYCFSHQS-GK--LEHLMKVHEKDVIGVTHHPHRNLLATYGEDC--TMKLW 511 (513)
Q Consensus 443 ~~~~~~~~s~~~~~l~~g~~d------g~i~iwd~~~-~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg--~i~iW 511 (513)
....+..-+|+..+.|+.+ ..+..||..+ .+ .+..++........+.+ ++.+.+.||.|| .+-.|
T Consensus 455 --~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 455 --IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred --ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhc
Confidence 1122233456666667643 2467899886 33 33444433333333444 788899999888 66666
Q ss_pred cC
Q 010324 512 KP 513 (513)
Q Consensus 512 dp 513 (513)
||
T Consensus 531 d~ 532 (557)
T PHA02713 531 NV 532 (557)
T ss_pred Cc
Confidence 65
No 388
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.50 E-value=0.099 Score=49.98 Aligned_cols=271 Identities=13% Similarity=0.165 Sum_probs=141.0
Q ss_pred CCCEEEEEecCCeEEEEEecccccccc-ccccccccccccCCccEEEEEEcC-----CCCEEEEEeCCCcEEEEEcCC--
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKK-DLQYQADETFMMHDETVLCIEFSR-----DSEMLASGSQDGKIKVWRIRS-- 295 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~~~dg~i~vwd~~~-- 295 (513)
+...+++||..|.++ ||+...+.... .+-.+ ..-..+|..++.-+ +...||. -.-..+.||.+..
T Consensus 36 ~~d~IivGS~~G~Lr-Iy~P~~~~~~~~~lllE-----~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~ 108 (418)
T PF14727_consen 36 GSDKIIVGSYSGILR-IYDPSGNEFQPEDLLLE-----TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVD 108 (418)
T ss_pred CccEEEEeccccEEE-EEccCCCCCCCccEEEE-----EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecC
Confidence 456899999999998 99885543221 11000 11356888887643 2234444 4466788888731
Q ss_pred cc-------eeee-cccccccCeEEEEEcc----C-CCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCC
Q 010324 296 GQ-------CLRR-LERAHSEGVTSLVFSR----D-GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 296 ~~-------~~~~-~~~~~~~~v~~~~~~~----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 362 (513)
|. .+.. +..........+++-| . ..++.+-+.||.+.+++-+.-.....+.. ---...+.+.+...
T Consensus 109 g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tD 187 (418)
T PF14727_consen 109 GTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTD 187 (418)
T ss_pred CCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCC
Confidence 11 1111 1111223334444443 2 35788899999999998654443344433 22234567888888
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEe-----------ecCCCC-----CCCCCceeeEEEecC---CCCCeEEEEcCCCcEE
Q 010324 363 RVVTASSDCTVKVWDLKSTDCLQT-----------FKPPPP-----LRGGDASVNSVHLFP---KNPDHIVVCNKTSSIY 423 (513)
Q Consensus 363 ~l~~~~~dg~i~iwd~~~~~~~~~-----------~~~~~~-----~~~~~~~v~~~~~~~---~~~~~l~~~~~~~~i~ 423 (513)
.+++++.+..+..|....-..... ...... .......+..+.... .....++. ....+.
T Consensus 188 sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvL--ger~Lf 265 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVL--GERSLF 265 (418)
T ss_pred EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEE--ecceEE
Confidence 999999999999987532110000 000000 001112233333222 22222222 234555
Q ss_pred EEEccCeEEEEeecCccCCCcEEEEE-E------CCC-CCEEEEEecCceEEEEECCCceeeEeeecccCCe--EEEEEc
Q 010324 424 IMTLQGQVVKSFSSGKREGGDFVAAC-V------SPK-GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDV--IGVTHH 493 (513)
Q Consensus 424 i~d~~~~~~~~~~~~~~~~~~~~~~~-~------s~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~~~~~ 493 (513)
+.+..|.... ..... ....+++ + .++ +..++.++.++.+.||. ..+++..-+....+| .-..|.
T Consensus 266 ~l~~~G~l~~-~krLd---~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~ 339 (418)
T PF14727_consen 266 CLKDNGSLRF-QKRLD---YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFN 339 (418)
T ss_pred EEcCCCeEEE-EEecC---CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccC
Confidence 5665553222 22211 1122222 1 122 12588899999999997 344454444333333 222233
Q ss_pred CCCCEEEEEECCCeEEe
Q 010324 494 PHRNLLATYGEDCTMKL 510 (513)
Q Consensus 494 p~~~~l~s~~~dg~i~i 510 (513)
.-..+|++-+.+|.+.+
T Consensus 340 ~~~G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 340 GLKGLIVSLSDEGQLSV 356 (418)
T ss_pred CCCceEEEEcCCCcEEE
Confidence 34568888889998865
No 389
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.50 E-value=0.073 Score=49.92 Aligned_cols=247 Identities=19% Similarity=0.210 Sum_probs=117.3
Q ss_pred ceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC---CCEEEEEeC-C-----
Q 010324 215 HAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD---SEMLASGSQ-D----- 285 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~-d----- 285 (513)
..+.|+|.|||+++++ ...|.|. +++ ..+.....+.. ..............++++|+ ..+|..... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~-~~~-~~g~~~~~v~~-~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIW-VVD-KDGSLKTPVAD-LPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEE-EEE-TTTEECEEEEE--TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CceEEEEeCCCcEEEE-eCCceEE-EEe-CCCcCcceecc-cccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 4678999999987775 5599996 877 34443111111 11233445678999999994 233333322 1
Q ss_pred ---CcEEEEEcCCc-------ceee-eccc--ccccCeEEEEEccCCCEEEEeeCCC-------------cEEEEecCCC
Q 010324 286 ---GKIKVWRIRSG-------QCLR-RLER--AHSEGVTSLVFSRDGSQILSTSFDS-------------TARIHGLKSG 339 (513)
Q Consensus 286 ---g~i~vwd~~~~-------~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg-------------~i~i~d~~~~ 339 (513)
..|.-|....+ +.+. .... .....-..++|.|||.+.++.+..+ .|.-.+. ++
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~-dG 157 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP-DG 157 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET-TS
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc-cC
Confidence 23444544333 1111 1111 1234557799999996666554332 2333332 12
Q ss_pred ce-------------eeE-ecccccceeEEEEccC-CCEEEEE-eCCCcEEEEeCCCCcee----Ee-------------
Q 010324 340 KL-------------LKE-FRGHSSYVNDAIFTND-GSRVVTA-SSDCTVKVWDLKSTDCL----QT------------- 386 (513)
Q Consensus 340 ~~-------------~~~-~~~~~~~v~~~~~~~~-~~~l~~~-~~dg~i~iwd~~~~~~~----~~------------- 386 (513)
+. ... -.++.. ...++|+|. |.++++= +.++.=.|.-+..+... ..
T Consensus 158 ~~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 158 SIPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp SB-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred cCCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 10 000 112223 457899998 5544332 22222222223322210 00
Q ss_pred -----ecCCCCCCCCCceeeEEEecCCC------CCeEEEEcCCCcEEEEEcc-CeEEE-EeecCccCCCcEEEEEECCC
Q 010324 387 -----FKPPPPLRGGDASVNSVHLFPKN------PDHIVVCNKTSSIYIMTLQ-GQVVK-SFSSGKREGGDFVAACVSPK 453 (513)
Q Consensus 387 -----~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~~~~i~i~d~~-~~~~~-~~~~~~~~~~~~~~~~~s~~ 453 (513)
+..+.....+...+..+.+.... ..++++....+.|....++ +..+. ...........+..+++.||
T Consensus 237 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp SS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred cCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 00000001122445556665332 2456666666788888776 32222 22222233446889999999
Q ss_pred CCEEEEEecCceEE
Q 010324 454 GEWIYCVGEDRNLY 467 (513)
Q Consensus 454 ~~~l~~g~~dg~i~ 467 (513)
|.+.++-..+|.|+
T Consensus 317 G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 GALYVSDDSDGKIY 330 (331)
T ss_dssp SEEEEEE-TTTTEE
T ss_pred CeEEEEECCCCeEe
Confidence 98888877788775
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.0031 Score=64.53 Aligned_cols=102 Identities=22% Similarity=0.321 Sum_probs=77.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeE
Q 010324 275 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVND 354 (513)
Q Consensus 275 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 354 (513)
.+..++.|+..|.+-..|+...-..........++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+.++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 45678899999999999876532211111235679999999999999999999999999999999999888877666555
Q ss_pred EE---EccCCCEEEEEeCCCcEEEEeC
Q 010324 355 AI---FTNDGSRVVTASSDCTVKVWDL 378 (513)
Q Consensus 355 ~~---~~~~~~~l~~~~~dg~i~iwd~ 378 (513)
+- +..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44 4456667888877776 5554
No 391
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.47 E-value=0.014 Score=58.79 Aligned_cols=227 Identities=11% Similarity=0.088 Sum_probs=122.9
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC-C-----cEEEEecCCCcee
Q 010324 275 DSEMLASGSQD------GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD-S-----TARIHGLKSGKLL 342 (513)
Q Consensus 275 ~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-----~i~i~d~~~~~~~ 342 (513)
.+..++.|+.+ ..+..+|..++.-...........-.+++.. ++...++|+.| | ++..||.++.+-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 34556666655 3678888877754333222233334445554 56778889888 3 5778888877643
Q ss_pred eEecccccceeEEEEccCCCEEEEEeCCCc-----EEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc
Q 010324 343 KEFRGHSSYVNDAIFTNDGSRVVTASSDCT-----VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN 417 (513)
Q Consensus 343 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 417 (513)
..-.-...+...-.-.-+|...++|+.||. +-.||..+.+- ....+ ............-++.+.++|+
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W--~~va~-----m~~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW--TPVAP-----MLTRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcc--cccCC-----CCcceeeeEEEEECCEEEEEcC
Confidence 311111111111112236788889998864 67777765431 11111 1112222222333446777777
Q ss_pred CCC------cEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc-----eEEEEECCCceeeEe--eeccc
Q 010324 418 KTS------SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR-----NLYCFSHQSGKLEHL--MKVHE 484 (513)
Q Consensus 418 ~~~------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~--~~~h~ 484 (513)
.++ .+..||...+................ +..-++...++|+.|+ +|..||..+.+-... +....
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 443 46777777665555444332222222 2234677778888776 377888877654322 22233
Q ss_pred CCeEEEEEcCCCCEEEEEECCCe-----EEeccC
Q 010324 485 KDVIGVTHHPHRNLLATYGEDCT-----MKLWKP 513 (513)
Q Consensus 485 ~~v~~~~~~p~~~~l~s~~~dg~-----i~iWdp 513 (513)
..+..+.+ ++...+.||.||. |..|||
T Consensus 514 s~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 514 SAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred ccccEEEE--CCEEEEEecccCccccceeEEcCC
Confidence 33333333 5677888888864 555665
No 392
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.44 E-value=0.014 Score=43.52 Aligned_cols=101 Identities=22% Similarity=0.278 Sum_probs=68.9
Q ss_pred eEEEEEcc-CC---CEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeE
Q 010324 310 VTSLVFSR-DG---SQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ 385 (513)
Q Consensus 310 v~~~~~~~-~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 385 (513)
|+++++.. ++ +.|++|+.|..|++|+ ..+.+..+.. ...|++++-... ..++.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 56677665 22 5899999999999997 4566777764 455777777665 579999999999999853 2233
Q ss_pred eecCCCCCCCCCceeeEEEecC---CCCCeEEEEcCCCcEE
Q 010324 386 TFKPPPPLRGGDASVNSVHLFP---KNPDHIVVCNKTSSIY 423 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~~~~i~ 423 (513)
..+. ...+.++.+.. ++...+++|-.+|.|-
T Consensus 76 RiKS-------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS-------KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc-------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3331 22355555544 3345788888888764
No 393
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.045 Score=48.27 Aligned_cols=169 Identities=11% Similarity=0.157 Sum_probs=114.5
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
|-...++++.|+|+.+.|++......- ++|=...|+++..++... -...-.+.+..+|.+.++--.++.+.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~-iVElt~~GdlirtiPL~g-------~~DpE~Ieyig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAA-IVELTKEGDLIRTIPLTG-------FSDPETIEYIGGNQFVIVDERDRALYL 154 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCce-EEEEecCCceEEEecccc-------cCChhHeEEecCCEEEEEehhcceEEE
Confidence 555669999999999988888777777 588888899888776532 223446777778888887777888888
Q ss_pred EEcCCcceeeecc---------cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee---eEeccc-------ccc
Q 010324 291 WRIRSGQCLRRLE---------RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL---KEFRGH-------SSY 351 (513)
Q Consensus 291 wd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~-------~~~ 351 (513)
+.+..+..+.... ...+...-.++|.|....|+.+-...-+.||.+..+... .....+ -..
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred EEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence 8776553222111 112567789999999999999988888888776533211 111111 234
Q ss_pred eeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeEeec
Q 010324 352 VNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFK 388 (513)
Q Consensus 352 v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 388 (513)
|.++.|++ .+..++-+.+++.+.-.|.. |..+..+.
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred cccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 77888887 45566667777878877765 44444443
No 394
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.41 E-value=0.21 Score=51.50 Aligned_cols=289 Identities=12% Similarity=0.111 Sum_probs=158.3
Q ss_pred cccCceeEEEECCCC------CEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 211 GTKSHAECARFSPDG------QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g------~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
.....|.|+.++|-| +++|+|.++..+.++--..+......... ....-+..|.-..+-.|..+|.++..
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l----~~~~iPRSIl~~~~e~d~~yLlvalg 603 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL----SGEIIPRSILLTTFEGDIHYLLVALG 603 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc----CCCccchheeeEEeeccceEEEEEcC
Confidence 345789999999842 37999998887754443333333221110 11112455666677777889999999
Q ss_pred CCcEEEEEc--CCcceeeecc-cccccCeEEEEEccCCCEEEEeeCCCc-------------------------------
Q 010324 285 DGKIKVWRI--RSGQCLRRLE-RAHSEGVTSLVFSRDGSQILSTSFDST------------------------------- 330 (513)
Q Consensus 285 dg~i~vwd~--~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~------------------------------- 330 (513)
||.+.-+-+ .+|..-..-+ .-...++.--.|+..++.-+.+..|.-
T Consensus 604 dG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~ 683 (1096)
T KOG1897|consen 604 DGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAY 683 (1096)
T ss_pred CceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccC
Confidence 998876654 4443211110 011233333333332222222222222
Q ss_pred -----------EEEEecCCCc--eeeEecccccceeEEEEccCCCEEEEEeCC--------------CcEEEEeCCCCce
Q 010324 331 -----------ARIHGLKSGK--LLKEFRGHSSYVNDAIFTNDGSRVVTASSD--------------CTVKVWDLKSTDC 383 (513)
Q Consensus 331 -----------i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~ 383 (513)
+.+.-+..-+ .+++.. -......+++.+....+.+.+.. ..++++|-.+.+.
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred CceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 2222111110 011111 22345566676644444443321 2367777776665
Q ss_pred eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc----------CCCcEEEEEccC-eEEEEeecCccCCCcEEEEEECC
Q 010324 384 LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN----------KTSSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSP 452 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~~~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~s~ 452 (513)
....+.... ....++.+..+..+.+.++++|+ ..|.|.++.... +.++....... .+.+.+++. -
T Consensus 763 l~~hef~~~--E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v-~Gav~aL~~-f 838 (1096)
T KOG1897|consen 763 LSSHEFERN--ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV-KGAVYALVE-F 838 (1096)
T ss_pred Eeecccccc--ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee-ccceeehhh-h
Confidence 544332211 12235566668777667777775 357888888774 55554444332 333444433 2
Q ss_pred CCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 453 KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 453 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
+|+++|.- +..|++|+..+++.++.-..|..++..+...-.+..++.|..=+++.+
T Consensus 839 ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 839 NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 56666544 578999999888777776678888888888888888988876555543
No 395
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.40 E-value=0.00047 Score=40.62 Aligned_cols=38 Identities=42% Similarity=0.789 Sum_probs=33.3
Q ss_pred ceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEe
Q 010324 340 KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377 (513)
Q Consensus 340 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 377 (513)
+....+..|...|.++.|++++..+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566677888999999999999999999999999996
No 396
>PHA02713 hypothetical protein; Provisional
Probab=97.34 E-value=0.056 Score=54.67 Aligned_cols=196 Identities=13% Similarity=0.060 Sum_probs=99.0
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCccee--eecccccccCeEEEEEccCCCEEEEeeCCC-----cEEEEecCCCce
Q 010324 275 DSEMLASGSQD------GKIKVWRIRSGQCL--RRLERAHSEGVTSLVFSRDGSQILSTSFDS-----TARIHGLKSGKL 341 (513)
Q Consensus 275 ~~~~l~s~~~d------g~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~ 341 (513)
++...+.||.+ ..+..||..++.-. ..+. ...... +++. -+|...+.|+.++ .+..||..+.+-
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~-~~R~~~-~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI-KNRCRF-SLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc-chhhce-eEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 56677777753 34778887766422 1111 111112 2222 2677778888764 478899876643
Q ss_pred ee--EecccccceeEEEEccCCCEEEEEeCCC-----------------------cEEEEeCCCCceeEeecCCCCCCCC
Q 010324 342 LK--EFRGHSSYVNDAIFTNDGSRVVTASSDC-----------------------TVKVWDLKSTDCLQTFKPPPPLRGG 396 (513)
Q Consensus 342 ~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~ 396 (513)
.. .+.........+ .-+|+..+.|+.++ .+..||..+.+-.. ..+.. ..
T Consensus 380 ~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~--v~~m~--~~ 453 (557)
T PHA02713 380 KMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET--LPNFW--TG 453 (557)
T ss_pred EECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee--cCCCC--cc
Confidence 22 111111111122 23577777777543 46778877654211 11110 01
Q ss_pred CceeeEEEecCCCCCeEEEEcCC------CcEEEEEccC-eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc--eEE
Q 010324 397 DASVNSVHLFPKNPDHIVVCNKT------SSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR--NLY 467 (513)
Q Consensus 397 ~~~v~~~~~~~~~~~~l~~~~~~------~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--~i~ 467 (513)
... .+++.. ++.+.++|+.+ ..+..||... ............... .-+..-+|+..++|+.+| .+.
T Consensus 454 r~~-~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~--~~~~~~~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 454 TIR-PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA--LHTILHDNTIMMLHCYESYMLQD 528 (557)
T ss_pred ccc-CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc--ceeEEECCEEEEEeeecceeehh
Confidence 111 112221 22566666543 2366788775 444433332221111 222233678888888888 788
Q ss_pred EEECCCceeeEeeeccc
Q 010324 468 CFSHQSGKLEHLMKVHE 484 (513)
Q Consensus 468 iwd~~~~~~~~~~~~h~ 484 (513)
.||..+.+-...-..|.
T Consensus 529 ~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 529 TFNVYTYEWNHICHQHS 545 (557)
T ss_pred hcCcccccccchhhhcC
Confidence 88888776544444444
No 397
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.34 E-value=0.12 Score=47.18 Aligned_cols=237 Identities=14% Similarity=0.159 Sum_probs=109.7
Q ss_pred eeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010324 216 AECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS 295 (513)
Q Consensus 216 v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~ 295 (513)
..++.|..+ ..+++ +..|.+ +-..+.|+.-..+... ..+ ......+....++..++ ++..|.|..= ...
T Consensus 64 l~~I~f~~~-~g~iv-G~~g~l--l~T~DgG~tW~~v~l~--~~l---pgs~~~i~~l~~~~~~l-~~~~G~iy~T-~Dg 132 (302)
T PF14870_consen 64 LNSISFDGN-EGWIV-GEPGLL--LHTTDGGKTWERVPLS--SKL---PGSPFGITALGDGSAEL-AGDRGAIYRT-TDG 132 (302)
T ss_dssp EEEEEEETT-EEEEE-EETTEE--EEESSTTSS-EE------TT----SS-EEEEEEEETTEEEE-EETT--EEEE-SST
T ss_pred EEEEEecCC-ceEEE-cCCceE--EEecCCCCCcEEeecC--CCC---CCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCC
Confidence 566777643 33444 455643 4444444433322211 011 22233333333443333 3445544322 234
Q ss_pred cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEE
Q 010324 296 GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV 375 (513)
Q Consensus 296 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 375 (513)
|+.-..+.......+..+.-++||.+++++.......-||.-...-...-+.....|..+.|.|++...+++ ..|.|++
T Consensus 133 G~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~ 211 (302)
T PF14870_consen 133 GKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQF 211 (302)
T ss_dssp TSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEE
T ss_pred CCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEE
Confidence 444344333456778899999999988888766666677753322222233346789999999998765544 8888888
Q ss_pred EeCCCCceeEeecCC-CCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCC
Q 010324 376 WDLKSTDCLQTFKPP-PPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKG 454 (513)
Q Consensus 376 wd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 454 (513)
=+.. ....++..+ .+.......+..+++.+++ .+.+++..|.+..=.-.|+.-+...........+..+.|.++.
T Consensus 212 s~~~--~~~~~w~~~~~~~~~~~~~~ld~a~~~~~--~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~ 287 (302)
T PF14870_consen 212 SDDP--DDGETWSEPIIPIKTNGYGILDLAYRPPN--EIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD 287 (302)
T ss_dssp EE-T--TEEEEE---B-TTSS--S-EEEEEESSSS---EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETT
T ss_pred ccCC--CCccccccccCCcccCceeeEEEEecCCC--CEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCC
Confidence 7722 122222221 1112344557888998764 4444555665554444466665555544445567788886554
Q ss_pred CEEEEEecCceEEEE
Q 010324 455 EWIYCVGEDRNLYCF 469 (513)
Q Consensus 455 ~~l~~g~~dg~i~iw 469 (513)
+ -++-+.+|.+.-|
T Consensus 288 ~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 288 K-GFVLGQDGVLLRY 301 (302)
T ss_dssp E-EEEE-STTEEEEE
T ss_pred c-eEEECCCcEEEEe
Confidence 4 4445567877654
No 398
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.34 E-value=0.073 Score=50.06 Aligned_cols=258 Identities=10% Similarity=0.077 Sum_probs=114.7
Q ss_pred cceeeeecccc-CceeEEEEC-----------CCCCEEEEEe-cCCeEEEEEecccccc----ccccccccccccccCCc
Q 010324 203 TLSHTIKFGTK-SHAECARFS-----------PDGQFLVSCS-FDGFIEVVWDYLSGKL----KKDLQYQADETFMMHDE 265 (513)
Q Consensus 203 ~~~~~~~~~h~-~~v~~~~~s-----------~~g~~la~g~-~dg~i~~iwd~~~~~~----~~~~~~~~~~~~~~h~~ 265 (513)
+..|++...+. ++....-|+ .+.++|+..+ ..+.| +|.|+.+... .+.+....... +..-.
T Consensus 53 qVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrI-yviD~~~dPr~P~l~KvIe~~ev~~-k~g~s 130 (461)
T PF05694_consen 53 QVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRI-YVIDTKTDPRKPRLHKVIEPEEVFE-KTGLS 130 (461)
T ss_dssp SEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--E-EEEE--S-TTS-EEEEEE-HHHHHH-HH-EE
T ss_pred cEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcE-EEEECCCCCCCCceEeeeCHHHHHh-hcCCC
Confidence 45566665554 355555554 2456777776 66778 5999874332 22222100000 00112
Q ss_pred cEEEEEEcCCCCEEEEEeC------CCcEEEEEcCCcceeeeccccc--ccCeEEEEEccCCCEEEEee-----------
Q 010324 266 TVLCIEFSRDSEMLASGSQ------DGKIKVWRIRSGQCLRRLERAH--SEGVTSLVFSRDGSQILSTS----------- 326 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~----------- 326 (513)
....+.--|+|+.++++-. -|-+.+.|-++.+......... ...-..+-|.|..+.+++..
T Consensus 131 ~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf 210 (461)
T PF05694_consen 131 RPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGF 210 (461)
T ss_dssp EEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT--
T ss_pred CCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCC
Confidence 2223334468888888622 2568888888777776665322 23446777888888888754
Q ss_pred ---------CCCcEEEEecCCCceeeEecccc--cceeEEEEcc--CCCEEEE-EeCCCcEEEEeC-CCCc----eeEee
Q 010324 327 ---------FDSTARIHGLKSGKLLKEFRGHS--SYVNDAIFTN--DGSRVVT-ASSDCTVKVWDL-KSTD----CLQTF 387 (513)
Q Consensus 327 ---------~dg~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~-~~~dg~i~iwd~-~~~~----~~~~~ 387 (513)
...++.+||+.+.+.++++.-.. ..+..+.|.. +..+=++ +.-.++|..|-- ..++ .+.++
T Consensus 211 ~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~i 290 (461)
T PF05694_consen 211 NPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDI 290 (461)
T ss_dssp -TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE
T ss_pred ChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEEC
Confidence 23579999999999999887532 3455666644 4444333 334444544432 3332 12222
Q ss_pred cCCCC----C-------CCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC----eEEEEeecCc-------------
Q 010324 388 KPPPP----L-------RGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG----QVVKSFSSGK------------- 439 (513)
Q Consensus 388 ~~~~~----~-------~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~------------- 439 (513)
..... + .....-++.+..+.++..+.+++-..|.++.||+.. +...++..+.
T Consensus 291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~ 370 (461)
T PF05694_consen 291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGK 370 (461)
T ss_dssp --EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS---
T ss_pred CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccc
Confidence 21100 0 011345789999999977777888899999999973 2333322211
Q ss_pred cCCCcEEEEEECCCCCEEEEEec
Q 010324 440 REGGDFVAACVSPKGEWIYCVGE 462 (513)
Q Consensus 440 ~~~~~~~~~~~s~~~~~l~~g~~ 462 (513)
.-.+...-+..|.||+.|+..++
T Consensus 371 ~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 371 RLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---S----EEE-TTSSEEEEE--
T ss_pred ccCCCCCeEEEccCCeEEEEEee
Confidence 11223456788999999887753
No 399
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.00074 Score=68.85 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=77.6
Q ss_pred CeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEE
Q 010324 411 DHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGV 490 (513)
Q Consensus 411 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 490 (513)
..++.|+..|.+...|..+.... +.......+++++++|+.+|..++.|-.+|.|.+||+..+++++.+..|..+++++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 67889999999999999876333 45555567889999999999999999999999999999999999888777766655
Q ss_pred E---EcCCCCEEEEEECCCe
Q 010324 491 T---HHPHRNLLATYGEDCT 507 (513)
Q Consensus 491 ~---~~p~~~~l~s~~~dg~ 507 (513)
- +..++..+.++..-|.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc
Confidence 4 3445566777777675
No 400
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.007 Score=57.27 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=96.9
Q ss_pred CCCEEE-EeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCC-------EEEEEeCCCcEEEEeCCCCce--eEee
Q 010324 318 DGSQIL-STSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS-------RVVTASSDCTVKVWDLKSTDC--LQTF 387 (513)
Q Consensus 318 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~--~~~~ 387 (513)
+.++|+ ++.....++-.|+..|+.+..++.+.. |+-+.+.|+.+ .-+.|-.|..|.-||.+-... +...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344443 455567789999999999999987766 77788888654 234566788899999884322 1111
Q ss_pred cCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEE
Q 010324 388 KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLY 467 (513)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 467 (513)
+... ........|.+- .+..++++|+.+|.|++||--+..-++...+ -+.+|..+..+.+|++|++.+ +..+.
T Consensus 423 q~kq--y~~k~nFsc~aT--T~sG~IvvgS~~GdIRLYdri~~~AKTAlPg--LG~~I~hVdvtadGKwil~Tc-~tyLl 495 (644)
T KOG2395|consen 423 QSKQ--YSTKNNFSCFAT--TESGYIVVGSLKGDIRLYDRIGRRAKTALPG--LGDAIKHVDVTADGKWILATC-KTYLL 495 (644)
T ss_pred eccc--cccccccceeee--cCCceEEEeecCCcEEeehhhhhhhhhcccc--cCCceeeEEeeccCcEEEEec-ccEEE
Confidence 1110 011223334433 3447999999999999999865554444433 367799999999999998776 55555
Q ss_pred EEEC
Q 010324 468 CFSH 471 (513)
Q Consensus 468 iwd~ 471 (513)
+.+.
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 5554
No 401
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.22 E-value=0.16 Score=52.83 Aligned_cols=119 Identities=13% Similarity=0.190 Sum_probs=72.7
Q ss_pred CCCEEEEEecCCeEEEEEecccccccccccccccccc-ccCCccEEEEEEc----------------CCCCEEEEEeCCC
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETF-MMHDETVLCIEFS----------------RDSEMLASGSQDG 286 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~----------------~~~~~l~s~~~dg 286 (513)
.+..|.+++.++.+ +-.|..+|+.+..+........ ..| .....+++. .++..++.++.|+
T Consensus 193 vgg~lYv~t~~~~V-~ALDa~TGk~lW~~d~~~~~~~~~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 193 VGDTLYLCTPHNKV-IALDAATGKEKWKFDPKLKTEAGRQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred ECCEEEEECCCCeE-EEEECCCCcEEEEEcCCCCccccccc-ccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 35577777778888 4788888887766543221100 001 001122221 1345788888999
Q ss_pred cEEEEEcCCcceeeecccccccCeE-------------EEEEcc--CCCEEEEeeC----------CCcEEEEecCCCce
Q 010324 287 KIKVWRIRSGQCLRRLERAHSEGVT-------------SLVFSR--DGSQILSTSF----------DSTARIHGLKSGKL 341 (513)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~ 341 (513)
.+.-.|.++|+....+. ....|. .+.-.| .+..+++|+. +|.|+-+|.++|+.
T Consensus 271 ~LiALDA~TGk~~W~fg--~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 271 RLIALDADTGKLCEDFG--NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred eEEEEECCCCCEEEEec--CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 99999999999887664 111110 111112 2345666643 68899999999999
Q ss_pred eeEec
Q 010324 342 LKEFR 346 (513)
Q Consensus 342 ~~~~~ 346 (513)
+..+.
T Consensus 349 ~W~~~ 353 (764)
T TIGR03074 349 VWAWD 353 (764)
T ss_pred eeEEe
Confidence 88876
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.18 E-value=0.083 Score=53.35 Aligned_cols=232 Identities=12% Similarity=0.115 Sum_probs=120.3
Q ss_pred CCCCCEEEEEecCC------eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC------CcEE
Q 010324 222 SPDGQFLVSCSFDG------FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD------GKIK 289 (513)
Q Consensus 222 s~~g~~la~g~~dg------~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d------g~i~ 289 (513)
+..+..+++||.++ .+. .+|..++.-...... . +...-.+++.. ++...++||.| .++.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve-~yd~~~~~w~~~a~m------~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve 352 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVE-CYDPKTNEWSSLAPM------P-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVE 352 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeE-EecCCcCcEeecCCC------C-cccccccEEEE-CCEEEEEccccCCCcccceEE
Confidence 34466777777773 564 788777643222111 1 22223344444 45778888888 3677
Q ss_pred EEEcCCcceee--ecccccccCeEEEEEccCCCEEEEeeCCC-----cEEEEecCCCceeeEecccccceeEEE-EccCC
Q 010324 290 VWRIRSGQCLR--RLERAHSEGVTSLVFSRDGSQILSTSFDS-----TARIHGLKSGKLLKEFRGHSSYVNDAI-FTNDG 361 (513)
Q Consensus 290 vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~v~~~~-~~~~~ 361 (513)
.||..+++-.. .+. ........... +|...++|+.|| ++-.||..+.+....-.-.. ...+.. ..-+|
T Consensus 353 ~YD~~~~~W~~~a~M~-~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g 428 (571)
T KOG4441|consen 353 RYDPRTNQWTPVAPMN-TKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGG 428 (571)
T ss_pred EecCCCCceeccCCcc-CccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECC
Confidence 88887766322 111 11111111222 688889999987 47778876654322211111 122222 22357
Q ss_pred CEEEEEeCCC------cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc-----EEEEEccCe
Q 010324 362 SRVVTASSDC------TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS-----IYIMTLQGQ 430 (513)
Q Consensus 362 ~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~-----i~i~d~~~~ 430 (513)
...++|+.++ ++..||..+..-...-+-... ... ..++.. +..++++|+.++. +..||....
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~----R~~-~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR----RSG-FGVAVL--NGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc----ccc-ceEEEE--CCEEEEECCccCCCccceEEEEcCCCC
Confidence 7788887543 577888877653221111111 111 112222 3367777776653 677887766
Q ss_pred EEEEeecCccCCCcEEEEEECCCCCEEEEEecCc-----eEEEEECCCce
Q 010324 431 VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR-----NLYCFSHQSGK 475 (513)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-----~i~iwd~~~~~ 475 (513)
..............+ -+..-++...++|+.|| +|..||..+.+
T Consensus 502 ~W~~v~~m~~~rs~~--g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 502 QWTMVAPMTSPRSAV--GVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ceeEcccCccccccc--cEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 555553332222211 12233566677777766 46667665543
No 403
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.012 Score=53.79 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=80.0
Q ss_pred cChhhH-HHHHHHHHhhcChHHHHHHHHhhcCccccc------cccHHHHHHHhccCChhhHHhhhccc-----cCChhh
Q 010324 5 IEARDV-IKIVLQFCKENSLQQTFQTLQNECQVSLNT------VDSIETFVADINSGRWDAILPQVAQL-----KLPRNK 72 (513)
Q Consensus 5 ~~~~e~-~~li~q~L~~~G~~~t~~~L~~Esg~~~~~------~~~~~~~~~~i~~g~w~~~~~~l~~~-----~~~~~~ 72 (513)
.+++++ +.+|..++...|+.+.+..|-+|+|...+. ...+.++-+++++|+..-|++++..- ....+.
T Consensus 113 ~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~L 192 (394)
T KOG2817|consen 113 FDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSSSL 192 (394)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccccH
Confidence 344444 899999999999999999999999997641 12455788899999999999988763 334456
Q ss_pred HHHHHHHHHHHHHHcCChH--HHHHHHHhCchh
Q 010324 73 LEDLYEQIVLEMIELRELD--TARAILRQTQAM 103 (513)
Q Consensus 73 ~~~~~~~~~le~l~~~~~~--~a~~~lr~~~~~ 103 (513)
-+.++.++|++++..+... +|++-.|....+
T Consensus 193 E~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~ 225 (394)
T KOG2817|consen 193 EFKLHSLHFLSLIRGGKSDQREALRYARTHFAP 225 (394)
T ss_pred HHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCc
Confidence 7789999999999999887 999999976555
No 404
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.12 E-value=0.27 Score=47.00 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=78.9
Q ss_pred CceeEEEECCCCCEEEEEe-----------cCC-eEEEEEeccc--cccccccccccccccccCCccEEEEEEcCCCCEE
Q 010324 214 SHAECARFSPDGQFLVSCS-----------FDG-FIEVVWDYLS--GKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 279 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~-----------~dg-~i~~iwd~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 279 (513)
.....|+|.++|+++++-. ..+ .|. +++-.+ |..... ..+...-.....+++.++| .+
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~-~l~d~dgdG~~d~~------~vfa~~l~~p~Gi~~~~~G-ly 85 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRIL-ILEDADGDGKYDKS------NVFAEELSMVTGLAVAVGG-VY 85 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEE-EEEcCCCCCCccee------EEeecCCCCccceeEecCC-EE
Confidence 3457789999999877753 223 664 555433 222111 1121223456889999988 44
Q ss_pred EEEeCCCcEEEEEcCCc-----c--ee-eecccc---cccCeEEEEEccCCCEEEEeeCC-------------------C
Q 010324 280 ASGSQDGKIKVWRIRSG-----Q--CL-RRLERA---HSEGVTSLVFSRDGSQILSTSFD-------------------S 329 (513)
Q Consensus 280 ~s~~~dg~i~vwd~~~~-----~--~~-~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-------------------g 329 (513)
+ ++.....++.|.... + .+ ..+... +......++|.|||.+.++-+.. |
T Consensus 86 V-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g 164 (367)
T TIGR02604 86 V-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGG 164 (367)
T ss_pred E-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCc
Confidence 4 444433333344211 1 11 112211 13447789999999876654421 4
Q ss_pred cEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCC
Q 010324 330 TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 370 (513)
Q Consensus 330 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 370 (513)
.|.-++..+++.. .+...-.....++|+++|+.+++-..+
T Consensus 165 ~i~r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 165 GLFRYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eEEEEecCCCeEE-EEecCcCCCccceECCCCCEEEEccCC
Confidence 4566666544432 222222335689999999887664433
No 405
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.10 E-value=0.18 Score=44.55 Aligned_cols=194 Identities=15% Similarity=0.202 Sum_probs=115.6
Q ss_pred eeeecccccccCeEEEEEccCCCEEEEeeCCC--cEEEEecCCCceeeEeccc-ccceeEEEEccCCCEEEEEeCCCcEE
Q 010324 298 CLRRLERAHSEGVTSLVFSRDGSQILSTSFDS--TARIHGLKSGKLLKEFRGH-SSYVNDAIFTNDGSRVVTASSDCTVK 374 (513)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~ 374 (513)
.+.++.+........+.|..+|..+-+.+.-| .|+.+|+.+++......-. ...--.++...+ +...-.=.++...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEE
Confidence 45555434445566788877887777777766 7999999999877655432 222334444433 3444445688999
Q ss_pred EEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEEEeecCc--cCCCcEEEEEEC
Q 010324 375 VWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGK--REGGDFVAACVS 451 (513)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~--~~~~~~~~~~~s 451 (513)
+||..+.+.+.++..+. .-..++ .++ ..++.+..+..++++|... ...+.+.... ..-..++-+-+-
T Consensus 114 ~yd~~tl~~~~~~~y~~-------EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPG-------EGWGLT--SDG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp EEETTTTEEEEEEE-SS-------S--EEE--ECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred EEccccceEEEEEecCC-------cceEEE--cCC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence 99999998888886432 334444 233 6788888899999999863 2333332211 112234445554
Q ss_pred CCCCEEEEEecCceEEEEECCCceeeEeeec------------c---cCCeEEEEEcCCCCEEEEEE
Q 010324 452 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV------------H---EKDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 452 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~------------h---~~~v~~~~~~p~~~~l~s~~ 503 (513)
+|...|-.-....|...|..+|+....+.. + ..-.+.++|+|..+.|...|
T Consensus 184 -~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 184 -NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp -TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred -cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 565555555778888999999988776531 1 24588999999765554444
No 406
>PRK10115 protease 2; Provisional
Probab=97.03 E-value=0.54 Score=48.92 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=69.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC------CcEEE
Q 010324 265 ETVLCIEFSRDSEMLASGSQD-----GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD------STARI 333 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i 333 (513)
-.+..+.|+|||++|+.+... ..|++.|+.+|..+.... ... -..++|.+|++.|+.+..+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 457788999999988876432 368899998886443322 111 1469999999877766543 36788
Q ss_pred EecCCC--ceeeEeccccccee-EEEEccCCCEEEEEeC---CCcEEEEeC
Q 010324 334 HGLKSG--KLLKEFRGHSSYVN-DAIFTNDGSRVVTASS---DCTVKVWDL 378 (513)
Q Consensus 334 ~d~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~iwd~ 378 (513)
+++.++ +....+........ ....+.++++++..+. ++.+.+++.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 888877 33333333222222 3333447887665543 456888885
No 407
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.02 E-value=0.31 Score=46.77 Aligned_cols=198 Identities=16% Similarity=0.204 Sum_probs=112.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeeccccc-ccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccc-cce
Q 010324 275 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAH-SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHS-SYV 352 (513)
Q Consensus 275 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v 352 (513)
++ .+..+..+|.|.-.|..++..+....... ...+..-.+..+|+ +++++.+|.++.+|.++|+.+....... ..+
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 44 45555778889889988888665443221 12223333333664 8888889999999998999888877655 112
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCC--CCCCCCceeeEEEecCCCCCeEEEEcC--CCcEEEEEcc
Q 010324 353 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP--PLRGGDASVNSVHLFPKNPDHIVVCNK--TSSIYIMTLQ 428 (513)
Q Consensus 353 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~--~~~i~i~d~~ 428 (513)
..-..-.++ .+..++.+|.+...|..++.......... .......+. . ....++.+.. ++.+.-.|..
T Consensus 146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~------~-~~~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA------I-ASGTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce------e-ecceEEEecCCCcceEEEEEcc
Confidence 222222233 34444478999999999998877655432 111111111 1 1144555544 5556666664
Q ss_pred -CeEEEEeecCccCCC-------cEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc
Q 010324 429 -GQVVKSFSSGKREGG-------DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH 483 (513)
Q Consensus 429 -~~~~~~~~~~~~~~~-------~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 483 (513)
|.............. .+..-...- +.-++.++.+|.+...|..+++.+......
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v-~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYV-DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEEE-CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 544444221111110 010001111 223467777888999999999998887664
No 408
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.02 E-value=0.0027 Score=39.34 Aligned_cols=35 Identities=26% Similarity=0.559 Sum_probs=30.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcce
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC 298 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 298 (513)
....|.+++|+|..++||.|+.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3467999999999999999999999999998 5554
No 409
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.12 Score=51.49 Aligned_cols=198 Identities=16% Similarity=0.232 Sum_probs=102.9
Q ss_pred CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe----cccccceeEEEEccCC
Q 010324 286 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF----RGHSSYVNDAIFTNDG 361 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~v~~~~~~~~~ 361 (513)
-.|+|++. +|+.+.++.-.|. .+..+.|+.+ ..|++...+|++.+|++- |+.+... ......|..+.+..+|
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDD-EELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEec-cccchHHHHhcCC-CeeeecccCC-ceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence 45888884 5787777763343 7889999965 467777889999999983 4333331 1122335555555455
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCC--eEEEEcCCCcEEEEEcc--CeEEEEeec
Q 010324 362 SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD--HIVVCNKTSSIYIMTLQ--GQVVKSFSS 437 (513)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~~~~i~i~d~~--~~~~~~~~~ 437 (513)
+++-..+|.+.+-+-.......+++..+ ....+.++-...+++.. .++-....--..++-.. ......+.
T Consensus 140 --Vavlt~~g~v~~i~~~~~~~~~~~~diP---~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~- 213 (829)
T KOG2280|consen 140 --VAVLTVSGQVILINGVEEPKLRKMPDIP---YNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALS- 213 (829)
T ss_pred --eEEEecCCcEEEEcCCCcchhhhCCCCC---CccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccC-
Confidence 4444445555544322222233333211 11111122222222111 11111100000111111 11111111
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc-cCCeEEEEEcCC
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH-EKDVIGVTHHPH 495 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~p~ 495 (513)
.....+..+.+||+.++|+--..+|.|.+-+....+....+... ..+...++|..+
T Consensus 214 --~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 214 --WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred --CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 12356788999999999999999999999998877766555421 122235555543
No 410
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.98 E-value=0.2 Score=44.89 Aligned_cols=166 Identities=16% Similarity=0.108 Sum_probs=95.7
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEe-cCCCcee-
Q 010324 266 TVLCIEFSRDSEMLASGS-QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHG-LKSGKLL- 342 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~- 342 (513)
.+.+.+++++++.++... .++.-.+|-...+....... ....+..-.|.+++...++...+....++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 788999999999887765 23333444334444333332 234788889999987777777666666663 2333221
Q ss_pred eEecc--cccceeEEEEccCCCEEEEEe---CCCcEEEEeCCCCce--eEeecCCCC-CCCCCceeeEEEecCCCCCeEE
Q 010324 343 KEFRG--HSSYVNDAIFTNDGSRVVTAS---SDCTVKVWDLKSTDC--LQTFKPPPP-LRGGDASVNSVHLFPKNPDHIV 414 (513)
Q Consensus 343 ~~~~~--~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~ 414 (513)
..... ....|..+.++|||..++... .++.|.+--+..... ...+..+.. .......+..+.|.+++ .+++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V 181 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVV 181 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEE
Confidence 12221 122799999999999888766 346677665432211 111111111 11234678999999987 5555
Q ss_pred EEcCC-CcEEE-EEccCeEEEE
Q 010324 415 VCNKT-SSIYI-MTLQGQVVKS 434 (513)
Q Consensus 415 ~~~~~-~~i~i-~d~~~~~~~~ 434 (513)
.+... +.+.. ....+.....
T Consensus 182 ~~~~~~~~~~~~v~~dG~~~~~ 203 (253)
T PF10647_consen 182 LGRSAGGPVVRLVSVDGGPSTP 203 (253)
T ss_pred EeCCCCCceeEEEEccCCcccc
Confidence 54443 33444 4444444333
No 411
>PRK10115 protease 2; Provisional
Probab=96.95 E-value=0.63 Score=48.43 Aligned_cols=240 Identities=10% Similarity=0.043 Sum_probs=118.9
Q ss_pred ceeEEEECCCCCEEEEEecC-----CeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC----
Q 010324 215 HAECARFSPDGQFLVSCSFD-----GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD---- 285 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g~~d-----g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---- 285 (513)
.+..+.+||||++||.+... ..+. +-|+.+|..+... + ...-..++|++|++.|+.+..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~-v~d~~tg~~l~~~-------i---~~~~~~~~w~~D~~~~~y~~~~~~~~ 196 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIR-FRNLETGNWYPEL-------L---DNVEPSFVWANDSWTFYYVRKHPVTL 196 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEE-EEECCCCCCCCcc-------c---cCcceEEEEeeCCCEEEEEEecCCCC
Confidence 46678899999999886432 2463 7777776532211 1 1111469999999877766442
Q ss_pred --CcEEEEEcCCc--ceeeecccccccCeE-EEEEccCCCEEEEeeC---CCcEEEEecC--CCceeeEecccccceeEE
Q 010324 286 --GKIKVWRIRSG--QCLRRLERAHSEGVT-SLVFSRDGSQILSTSF---DSTARIHGLK--SGKLLKEFRGHSSYVNDA 355 (513)
Q Consensus 286 --g~i~vwd~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~v~~~ 355 (513)
..|+.+++.++ +....+. ....... ....+.++++++..+. ++.+.+++.. ++.....+.........+
T Consensus 197 ~~~~v~~h~lgt~~~~d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (686)
T PRK10115 197 LPYQVWRHTIGTPASQDELVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSL 275 (686)
T ss_pred CCCEEEEEECCCChhHCeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEE
Confidence 36788888887 3233333 2222233 3333448887765443 3578888842 333222222222222222
Q ss_pred EEccCCCEEEEEeC---CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEE--EccCe
Q 010324 356 IFTNDGSRVVTASS---DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM--TLQGQ 430 (513)
Q Consensus 356 ~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~--d~~~~ 430 (513)
. +..+.+++.... ...|...++........+.+. .....+..+.++ +..++++...++.-.++ +..+.
T Consensus 276 ~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~----~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~ 348 (686)
T PRK10115 276 D-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP----RENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTR 348 (686)
T ss_pred E-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECC----CCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCC
Confidence 2 222333333222 123444444421111122111 123467777776 32566666667665554 44344
Q ss_pred EEEEeecCccCCCcEEEEEEC--CCCC-EEEEEe---cCceEEEEECCCce
Q 010324 431 VVKSFSSGKREGGDFVAACVS--PKGE-WIYCVG---EDRNLYCFSHQSGK 475 (513)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~s--~~~~-~l~~g~---~dg~i~iwd~~~~~ 475 (513)
....+.... ...+..+..+ +++. ++++.+ .-+.++.+|..+++
T Consensus 349 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 349 EVIGIAFDD--PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ceEEecCCC--CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 444333111 1112223333 4443 444333 35678999988764
No 412
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.018 Score=54.61 Aligned_cols=133 Identities=10% Similarity=0.165 Sum_probs=89.2
Q ss_pred EEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC------CCeEEEEcCCCcEEEEEcc--CeEEEEe
Q 010324 364 VVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN------PDHIVVCNKTSSIYIMTLQ--GQVVKSF 435 (513)
Q Consensus 364 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~~~~i~i~d~~--~~~~~~~ 435 (513)
+.++.....++--|++.|+.+..+.... .|+-+.+.|+. +..-++|-.+..|.-||.+ +.....+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~-------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFED-------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccC-------CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3344555668888999999998887543 25555555543 2345667788899999998 3311111
Q ss_pred ecCc--cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEEC
Q 010324 436 SSGK--REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE 504 (513)
Q Consensus 436 ~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 504 (513)
...+ .......|.+-..+| +|++|+.+|.|++||.-..+....+++-..+|..+..+.+|.+|+..+.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence 1111 112334455555444 7999999999999998444445667888899999999999998776553
No 413
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.91 E-value=0.44 Score=49.72 Aligned_cols=113 Identities=13% Similarity=0.230 Sum_probs=75.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCcceeeeccccccc-------CeEEEEEcc----------------CCCEEEEeeCCCcEE
Q 010324 276 SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSE-------GVTSLVFSR----------------DGSQILSTSFDSTAR 332 (513)
Q Consensus 276 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~v~~~~~~~----------------~~~~l~~~~~dg~i~ 332 (513)
+..|+.++.++.|.-.|..+|+.+.++...... ....+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557888888899999999999988877532111 122233321 344788899999999
Q ss_pred EEecCCCceeeEeccccccee-------------EEEEcc--CCCEEEEEeC----------CCcEEEEeCCCCceeEee
Q 010324 333 IHGLKSGKLLKEFRGHSSYVN-------------DAIFTN--DGSRVVTASS----------DCTVKVWDLKSTDCLQTF 387 (513)
Q Consensus 333 i~d~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 387 (513)
-.|.++|+.+..+... +.|. .+.-.| .+..+++|+. +|.|+-+|.++|+....+
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999998776421 1110 011112 1345666643 688999999999998887
Q ss_pred cC
Q 010324 388 KP 389 (513)
Q Consensus 388 ~~ 389 (513)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 64
No 414
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.88 E-value=0.5 Score=46.13 Aligned_cols=122 Identities=12% Similarity=0.152 Sum_probs=73.9
Q ss_pred cccCceeEEEECCC----C-CEEEEEecCCeEEEEEecccc-----ccccccccccccccccCCccEEEEEEcCCCCEEE
Q 010324 211 GTKSHAECARFSPD----G-QFLVSCSFDGFIEVVWDYLSG-----KLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280 (513)
Q Consensus 211 ~h~~~v~~~~~s~~----g-~~la~g~~dg~i~~iwd~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 280 (513)
|.-..|..+.|.|- - .+||+-. ...|. +|.+... +.......+....+ .---..+.|+|....|+
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQH-kkhVt-VWqL~~s~~e~~K~l~sQtcEi~e~~---pvLpQGCVWHPk~~iL~ 128 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQH-KKHVT-VWQLCPSTTERNKLLMSQTCEIREPF---PVLPQGCVWHPKKAILT 128 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEec-cceEE-EEEeccCccccccceeeeeeeccCCc---ccCCCcccccCCCceEE
Confidence 66677899999984 3 3555544 55674 9987621 21111111111111 11224577999998888
Q ss_pred EEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeC-CCcEEEEecC
Q 010324 281 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLK 337 (513)
Q Consensus 281 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~ 337 (513)
+-.....-.++++.......+......+-|.|.+|.+||+.|+++-. .=.-++||-.
T Consensus 129 VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 129 VLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 77766555566665433322222246788999999999999887643 3356889853
No 415
>PHA03098 kelch-like protein; Provisional
Probab=96.74 E-value=0.16 Score=51.56 Aligned_cols=190 Identities=9% Similarity=0.004 Sum_probs=91.2
Q ss_pred CCCEEEEEeCCC------cEEEEEcCCcceeeecccc-cccCeEEEEEccCCCEEEEeeCC-----CcEEEEecCCCcee
Q 010324 275 DSEMLASGSQDG------KIKVWRIRSGQCLRRLERA-HSEGVTSLVFSRDGSQILSTSFD-----STARIHGLKSGKLL 342 (513)
Q Consensus 275 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~ 342 (513)
++..++.|+.++ .+..||..+++-...-... .......+. -++..++.|+.+ ..+..||..+.+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456667776542 5778888776542211101 111122222 267777788765 35778888766433
Q ss_pred eEecccccceeEEEEccCCCEEEEEeCC------CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE
Q 010324 343 KEFRGHSSYVNDAIFTNDGSRVVTASSD------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 343 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 416 (513)
..-......-...+..-+++.++.|+.+ ..+..||+.+.+-...-..+....+ .++... ++.+++.|
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-----~~~~~~--~~~iyv~G 444 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-----GCAIYH--DGKIYVIG 444 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-----ceEEEE--CCEEEEEC
Confidence 2111111111111122356667777632 3578899876542221111111111 112221 22555666
Q ss_pred cCC--------CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC-----ceEEEEECCCce
Q 010324 417 NKT--------SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-----RNLYCFSHQSGK 475 (513)
Q Consensus 417 ~~~--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~ 475 (513)
+.+ ..+..||.....................+. .+++.++.|+.+ +.+.+||..+.+
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 532 237888887554444432221111111222 266777777654 468888887654
No 416
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.74 E-value=0.44 Score=43.55 Aligned_cols=284 Identities=16% Similarity=0.150 Sum_probs=129.2
Q ss_pred eeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccc-cccccccccccCCccEEEEEEcCCCCEEEEEe
Q 010324 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKD-LQYQADETFMMHDETVLCIEFSRDSEMLASGS 283 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 283 (513)
...+.......+..+.|.....-.|+|. .+.| +...++-.... ....... .-.-...++.|..+ ..+++|
T Consensus 8 W~~v~l~t~~~l~dV~F~d~~~G~~VG~-~g~i---l~T~DGG~tW~~~~~~~~~---~~~~~l~~I~f~~~-~g~ivG- 78 (302)
T PF14870_consen 8 WQQVSLPTDKPLLDVAFVDPNHGWAVGA-YGTI---LKTTDGGKTWQPVSLDLDN---PFDYHLNSISFDGN-EGWIVG- 78 (302)
T ss_dssp EEEEE-S-SS-EEEEEESSSS-EEEEET-TTEE---EEESSTTSS-EE-----S--------EEEEEEEETT-EEEEEE-
T ss_pred cEEeecCCCCceEEEEEecCCEEEEEec-CCEE---EEECCCCccccccccCCCc---cceeeEEEEEecCC-ceEEEc-
Confidence 3455556677889999996666667665 4543 44444332222 1111000 01224667888653 344444
Q ss_pred CCCcEEEEEcCCcceeeeccc--ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce-eeEecccccceeEEEEccC
Q 010324 284 QDGKIKVWRIRSGQCLRRLER--AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL-LKEFRGHSSYVNDAIFTND 360 (513)
Q Consensus 284 ~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~ 360 (513)
..+ +.+...+.|+.-..+.. .-......+....++ ....++..|.|+.= .+.|+. ........+.+..+.-+++
T Consensus 79 ~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~d 155 (302)
T PF14870_consen 79 EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSD 155 (302)
T ss_dssp ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TT
T ss_pred CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCC
Confidence 444 34444455554444321 122333444444444 33334445654332 223332 2223344567888889999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeEEEE-eec
Q 010324 361 GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKS-FSS 437 (513)
Q Consensus 361 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~-~~~ 437 (513)
|.+++++..-....-||.-...- .... ......+.++.|.|++ .+.+ ....|.+++=+.. ...... ...
T Consensus 156 G~~vavs~~G~~~~s~~~G~~~w-~~~~-----r~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~ 227 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDPGQTTW-QPHN-----RNSSRRIQSMGFSPDG-NLWM-LARGGQIQFSDDPDDGETWSEPIIP 227 (302)
T ss_dssp S-EEEEETTSSEEEEE-TT-SS--EEEE-------SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-T
T ss_pred CcEEEEECcccEEEEecCCCccc-eEEc-----cCccceehhceecCCC-CEEE-EeCCcEEEEccCCCCccccccccCC
Confidence 99888876655566777542111 1111 0234689999999985 4444 4488888888832 222222 122
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeee---cccCCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK---VHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
.......+..+++.+++...++|+ .|.++ .....|+.=...+ .-...++.+.|.+..+-++ .+.+|.|.-|
T Consensus 228 ~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 228 IKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp TSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred cccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 223344578999999877777665 55443 3334443222221 2244688888876544454 5578887655
No 417
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.74 E-value=0.91 Score=47.10 Aligned_cols=270 Identities=12% Similarity=0.107 Sum_probs=139.7
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC--C----CEEEEEeCCC
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD--S----EMLASGSQDG 286 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~----~~l~s~~~dg 286 (513)
.+.+++.+.+.+...++.++.++.+ +..++..+.+..... ..-...|.|+.++|- + +.++.|.++.
T Consensus 487 p~~~ti~~~~~n~sqVvvA~~~~~l-~y~~i~~~~l~e~~~-------~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~ 558 (1096)
T KOG1897|consen 487 PGKITIGVVSANASQVVVAGGGLAL-FYLEIEDGGLREVSH-------KEFEYEVACLDISPLGDAPNKSRLLAVGLWSD 558 (1096)
T ss_pred CCceEEEEEeecceEEEEecCccEE-EEEEeeccceeeeee-------heecceeEEEecccCCCCCCcceEEEEEeecc
Confidence 3445566666666677777777776 455655544221111 113578999999983 2 3788888776
Q ss_pred cEEEEEc-CCcceeeecccc---cccCeEEEEEccCCCEEEEeeCCCcEEEE--ecCCCceeeEec--ccccceeEEEEc
Q 010324 287 KIKVWRI-RSGQCLRRLERA---HSEGVTSLVFSRDGSQILSTSFDSTARIH--GLKSGKLLKEFR--GHSSYVNDAIFT 358 (513)
Q Consensus 287 ~i~vwd~-~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~--~~~~~v~~~~~~ 358 (513)
.+.+.-. .+...+...... -+..|--..+-.|..+|.++..||.+..+ |..+|..-..-+ -...++.--.|+
T Consensus 559 ~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~ 638 (1096)
T KOG1897|consen 559 ISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFS 638 (1096)
T ss_pred eEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEe
Confidence 6554433 333333222111 22345555565578899999999988765 444554322221 124456666677
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEE-ecC-CCCCeEEEEcCCCcEEEEEcc---CeEEE
Q 010324 359 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVH-LFP-KNPDHIVVCNKTSSIYIMTLQ---GQVVK 433 (513)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~-~~~~~l~~~~~~~~i~i~d~~---~~~~~ 433 (513)
..++.-+.+..|.-..+|.-+..-+...+.. ..+..++ ++. ..+..++.++ .+.+.+..++ .-.++
T Consensus 639 sk~~t~vfa~sdrP~viY~~n~kLv~spls~--------kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~ir 709 (1096)
T KOG1897|consen 639 SKSRTAVFALSDRPTVIYSSNGKLVYSPLSL--------KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIR 709 (1096)
T ss_pred eCCceEEEEeCCCCEEEEecCCcEEEeccch--------HHhhhhcccccccCCceEEEec-CCceEEEEecchhhccee
Confidence 6666555566677677776443222111111 1122222 222 2234444443 4455665554 22233
Q ss_pred EeecCccCCCcEEEEEECCCCCEEEEEec-----------C---ceEEEEECCCceeeEeeeccc----CCeEEEEEcCC
Q 010324 434 SFSSGKREGGDFVAACVSPKGEWIYCVGE-----------D---RNLYCFSHQSGKLEHLMKVHE----KDVIGVTHHPH 495 (513)
Q Consensus 434 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-----------d---g~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~p~ 495 (513)
++.. +..+..+|+.+....+++.+. . ..++++|-++.+.+....-.. -.+.++.|..|
T Consensus 710 tvpl----~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d 785 (1096)
T KOG1897|consen 710 TVPL----GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDD 785 (1096)
T ss_pred eecC----CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCC
Confidence 3222 334556677664444443331 1 146777777665554332211 13555668777
Q ss_pred -CCEEEEEE
Q 010324 496 -RNLLATYG 503 (513)
Q Consensus 496 -~~~l~s~~ 503 (513)
+.+++.|.
T Consensus 786 ~~t~~vVGT 794 (1096)
T KOG1897|consen 786 PNTYYVVGT 794 (1096)
T ss_pred CceEEEEEE
Confidence 45666653
No 418
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.72 E-value=0.22 Score=48.49 Aligned_cols=117 Identities=15% Similarity=0.236 Sum_probs=74.2
Q ss_pred CCccEEEEEEcCC----CCEEEEEeCCCcEEEEEcC-----Ccceeeecc----cccccCeEEEEEccCCCEEEEeeCCC
Q 010324 263 HDETVLCIEFSRD----SEMLASGSQDGKIKVWRIR-----SGQCLRRLE----RAHSEGVTSLVFSRDGSQILSTSFDS 329 (513)
Q Consensus 263 h~~~v~~l~~~~~----~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg 329 (513)
.-..|..++|.|- ...|++......|.||.+. +++.+.... ....--...+.|+|....|++-....
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 4456999999993 3355556678899999875 222222211 01111235688999998888776655
Q ss_pred cEEEEecCCCc--eeeEecccccceeEEEEccCCCEEEEEeCC-CcEEEEeCCC
Q 010324 330 TARIHGLKSGK--LLKEFRGHSSYVNDAIFTNDGSRVVTASSD-CTVKVWDLKS 380 (513)
Q Consensus 330 ~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~ 380 (513)
.-.+++++... ....+ ...+.|.|.+|.+||++|+++-.. =.-++||-..
T Consensus 135 vSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 54566655332 22233 356789999999999988776443 3457888543
No 419
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.71 E-value=0.54 Score=44.11 Aligned_cols=238 Identities=13% Similarity=0.103 Sum_probs=114.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcce---eeec---ccccccCeEEEEEccC---CCEEEEeeC-C-------
Q 010324 266 TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC---LRRL---ERAHSEGVTSLVFSRD---GSQILSTSF-D------- 328 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~---~~~~~~~v~~~~~~~~---~~~l~~~~~-d------- 328 (513)
..+.|+|.|||+.+++ ...|.|++++ ..+.. +..+ ..........++++|+ ..+|.+... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4678999999877665 5699999999 44443 2222 2234567899999994 234443332 1
Q ss_pred -CcEEEEecCCC-------cee-eEecc---cccceeEEEEccCCCEEEEEeCCCc-------------EEEEeCCCCce
Q 010324 329 -STARIHGLKSG-------KLL-KEFRG---HSSYVNDAIFTNDGSRVVTASSDCT-------------VKVWDLKSTDC 383 (513)
Q Consensus 329 -g~i~i~d~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~~ 383 (513)
..|.-|....+ +.+ ..... ....-..+.|.|||.+.++.+..+. |.-.+.. +..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 23444444332 111 11122 2334567999999987777665432 2222211 110
Q ss_pred eEeecCCCC--------CCCCCceeeEEEecCCCCCeEEEEc-CCC--cEEEEEccCeEE--------------------
Q 010324 384 LQTFKPPPP--------LRGGDASVNSVHLFPKNPDHIVVCN-KTS--SIYIMTLQGQVV-------------------- 432 (513)
Q Consensus 384 ~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~l~~~~-~~~--~i~i~d~~~~~~-------------------- 432 (513)
... .+... ....-.....++|.|....++++-. .+. .|.+..- +...
T Consensus 160 p~d-nP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~-G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 160 PAD-NPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEP-GGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp -TT-STTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-T-T-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCC-CccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEecc-CCcCCCCCCcCCCCCCCCcccccc
Confidence 000 00000 0001123456778777424333321 121 1222110 1000
Q ss_pred ------EEeecCccCCCcEEEEEECC-------CCCEEEEEecCceEEEEECCCceeeE----eeecccCCeEEEEEcCC
Q 010324 433 ------KSFSSGKREGGDFVAACVSP-------KGEWIYCVGEDRNLYCFSHQSGKLEH----LMKVHEKDVIGVTHHPH 495 (513)
Q Consensus 433 ------~~~~~~~~~~~~~~~~~~s~-------~~~~l~~g~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~p~ 495 (513)
...... .+...+..+.|.. .|.++++.-..+.|....+..+..+. .+......+..+++.||
T Consensus 238 ~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 238 SCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp S-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 000000 1113344555532 35566666667788888876543221 12234457999999999
Q ss_pred CCEEEEEECCCeEE
Q 010324 496 RNLLATYGEDCTMK 509 (513)
Q Consensus 496 ~~~l~s~~~dg~i~ 509 (513)
|.++++.+.+|.|.
T Consensus 317 G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 GALYVSDDSDGKIY 330 (331)
T ss_dssp SEEEEEE-TTTTEE
T ss_pred CeEEEEECCCCeEe
Confidence 99999988888774
No 420
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.71 E-value=0.37 Score=42.20 Aligned_cols=200 Identities=12% Similarity=0.057 Sum_probs=119.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeE
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE 344 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 344 (513)
..-..++-.|||..-.++...+.|--.|-.+|+....-. +.......+..-|||..-++-+.. -|.-.|.++.+. .+
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~ 138 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL-GSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TR 138 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEec-CCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EE
Confidence 344567788999888888888888889999988654443 666777788888988876665544 455556544432 22
Q ss_pred ec----ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC
Q 010324 345 FR----GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS 420 (513)
Q Consensus 345 ~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 420 (513)
+. ..........|.+.|+.-+++.. |.---.|..+ ..+..+..+ .....+.++..|++ ...++.-.+.
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaP-----qG~gpyGi~atpdG-svwyaslagn 210 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAP-----QGGGPYGICATPDG-SVWYASLAGN 210 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccC-----CCCCCcceEECCCC-cEEEEecccc
Confidence 22 22445778889999998887753 2111112111 122222222 12345667778877 5555555555
Q ss_pred cEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce
Q 010324 421 SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK 475 (513)
Q Consensus 421 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 475 (513)
.|...|.....-..+............+-.+|.|+.-++-...+.++.+|..+..
T Consensus 211 aiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 211 AIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred ceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 5555555422222222222212233455567888888887788888888876543
No 421
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.69 E-value=0.0078 Score=50.77 Aligned_cols=104 Identities=23% Similarity=0.298 Sum_probs=66.1
Q ss_pred CCEEEEEeCCCcEEEEEcCC-cceeeecccccccCeE-EEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccc-cce
Q 010324 276 SEMLASGSQDGKIKVWRIRS-GQCLRRLERAHSEGVT-SLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHS-SYV 352 (513)
Q Consensus 276 ~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v 352 (513)
+..++.|+.+|.|.+|+..- |.....+. .....|. .+.-..++.+..+++.||.|+.|++.-++.+.....|. .++
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~-s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC-SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhh-cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 45788999999999998762 22111121 1222232 23333456688899999999999998888777766666 445
Q ss_pred eEEEEccCCCEEEEE--eCCCcEEEEeCCC
Q 010324 353 NDAIFTNDGSRVVTA--SSDCTVKVWDLKS 380 (513)
Q Consensus 353 ~~~~~~~~~~~l~~~--~~dg~i~iwd~~~ 380 (513)
.....+..+..++.+ +.|..++.|++..
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhh
Confidence 445555555555555 5566666666553
No 422
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.61 E-value=0.0074 Score=37.44 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=30.7
Q ss_pred cccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce
Q 010324 306 HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 341 (513)
Q Consensus 306 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 341 (513)
....|.+++|+|..+.+|.|+.+|.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 4567999999999999999999999999998 5544
No 423
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.61 E-value=0.062 Score=53.75 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=72.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEc--cCCCEEEEeeCCCcEEEEecC--------
Q 010324 268 LCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS--RDGSQILSTSFDSTARIHGLK-------- 337 (513)
Q Consensus 268 ~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~-------- 337 (513)
.-+.-+.-++..++-+....+.|||...+.............|.++.|. |+|+.+++.+..+.|.+|.-.
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 3333444444444444455899999998875554443457889999996 589999999999999988431
Q ss_pred -CCceeeEe--cccc-cceeEEEEccCCCEEEEEeCCCcEEEEeCC
Q 010324 338 -SGKLLKEF--RGHS-SYVNDAIFTNDGSRVVTASSDCTVKVWDLK 379 (513)
Q Consensus 338 -~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 379 (513)
+...+..+ ..++ .+|.+..|.++|..++.++ ..+.|+|-.
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 11233332 2333 6799999999987555443 458888743
No 424
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.54 E-value=1.2 Score=46.11 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=52.7
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC----------cce--e-ee-------cccccccCeEEEEEccC---CCE
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRS----------GQC--L-RR-------LERAHSEGVTSLVFSRD---GSQ 321 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~----------~~~--~-~~-------~~~~~~~~v~~~~~~~~---~~~ 321 (513)
-.|..+..+|+|++|+..|..| |.|-.+.. |+. . ++ +.......|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688999999999999998765 44444421 111 1 11 11234567899999995 589
Q ss_pred EEEeeCCCcEEEEecCCC
Q 010324 322 ILSTSFDSTARIHGLKSG 339 (513)
Q Consensus 322 l~~~~~dg~i~i~d~~~~ 339 (513)
|++-+.|+++++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999654
No 425
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.034 Score=57.70 Aligned_cols=149 Identities=16% Similarity=0.101 Sum_probs=96.7
Q ss_pred cceeEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeEeec-----CCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcE
Q 010324 350 SYVNDAIFTNDGSRVVTAS--SDCTVKVWDLKSTDCLQTFK-----PPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 422 (513)
Q Consensus 350 ~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 422 (513)
.++..+...+|+...++.. .+-.|..||+++...-.... ..........-..++.|.|.-+...+++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3566666777776554443 34478999998643222111 1111112223456778999888888999999999
Q ss_pred EEEEccC--eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc----cCCeEEEEEcCCC
Q 010324 423 YIMTLQG--QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH----EKDVIGVTHHPHR 496 (513)
Q Consensus 423 ~i~d~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~~~~~p~~ 496 (513)
.+..+.- ..+..+. .....++++|+|.|+.+++|-..|++.-|... ++....+.+. ...|.+|+|-...
T Consensus 181 ~V~~~~~~~~~v~s~p----~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP----VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccC----cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 9888762 2222221 24457899999999999999999999888753 3333333221 3579999998877
Q ss_pred CEEEEEE
Q 010324 497 NLLATYG 503 (513)
Q Consensus 497 ~~l~s~~ 503 (513)
.++++-+
T Consensus 256 eflvvy~ 262 (1405)
T KOG3630|consen 256 EFLVVYG 262 (1405)
T ss_pred eEEEEec
Confidence 7776654
No 426
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.43 E-value=0.93 Score=43.44 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=34.6
Q ss_pred ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecC
Q 010324 349 SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP 389 (513)
Q Consensus 349 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 389 (513)
...+.+++.+|++++.++...-|.|.++|+.++..++.++.
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 34578899999999888888889999999999887776663
No 427
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.35 E-value=0.72 Score=41.32 Aligned_cols=226 Identities=14% Similarity=0.133 Sum_probs=129.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcC------Ccc-eeeeccc----ccccCeEEEEEccCCC------------EE
Q 010324 266 TVLCIEFSRDSEMLASGSQDGKIKVWRIR------SGQ-CLRRLER----AHSEGVTSLVFSRDGS------------QI 322 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~~dg~i~vwd~~------~~~-~~~~~~~----~~~~~v~~~~~~~~~~------------~l 322 (513)
.-+.|+++|.+.+-++....+...+||.. ..+ .+.++.. ......+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999877777778899999986 122 2222221 1234577888874322 36
Q ss_pred EEeeCCCcEEEEecCCCce-----eeEeccc-cc-ceeEEEEcc--CCCEEEEE-eCCCcEEEEeCCCCcee--EeecCC
Q 010324 323 LSTSFDSTARIHGLKSGKL-----LKEFRGH-SS-YVNDAIFTN--DGSRVVTA-SSDCTVKVWDLKSTDCL--QTFKPP 390 (513)
Q Consensus 323 ~~~~~dg~i~i~d~~~~~~-----~~~~~~~-~~-~v~~~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~~--~~~~~~ 390 (513)
+.+++||+|.-|...-+.. ...+... .+ .-..+++.. .+.+|..+ -..++|.+||-.-.... ..+..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7788999999998532221 1222211 12 233455543 34555544 45788999985432211 011111
Q ss_pred CCCCCCCce-----------eeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECC------C
Q 010324 391 PPLRGGDAS-----------VNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSP------K 453 (513)
Q Consensus 391 ~~~~~~~~~-----------v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~------~ 453 (513)
. +...-.+ |+-..-.+.. ..=+.+..-|.|-++|..+..++++.....-. ....++..| .
T Consensus 184 ~-iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LN-aPWG~a~APa~FG~~s 260 (336)
T TIGR03118 184 A-LPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQLLRRVASSGRLN-APWGLAIAPESFGSLS 260 (336)
T ss_pred C-CCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcEEEEeccCCccc-CCceeeeChhhhCCCC
Confidence 0 0011111 1111111111 12233344578999999999999886654322 234555543 4
Q ss_pred CCEEEEEecCceEEEEECCCceeeEeeecccC------CeEEEEEcC
Q 010324 454 GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEK------DVIGVTHHP 494 (513)
Q Consensus 454 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~~~~~p 494 (513)
|.+|+---.||+|..||..+++.+..+....+ .++.+.|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 66666666899999999999998877765543 356788865
No 428
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.34 E-value=0.66 Score=40.75 Aligned_cols=200 Identities=14% Similarity=0.163 Sum_probs=128.7
Q ss_pred cccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeE
Q 010324 306 HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ 385 (513)
Q Consensus 306 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 385 (513)
....-..++-.|||..-+++...+.|--.|..+|+....--+.......+...|||..-++-+.. .|.-.|-++.+. .
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t 137 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-T 137 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-E
Confidence 34455678888999988999888999999999998776655566667788899998876665444 566677666553 3
Q ss_pred eecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCce
Q 010324 386 TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRN 465 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 465 (513)
.+..+. ...........|.+.+ .+-+++. .|.---.|.....++.+... .+.....+|..|+|..-++.-.++.
T Consensus 138 ~f~lp~--~~a~~nlet~vfD~~G-~lWFt~q-~G~yGrLdPa~~~i~vfpaP--qG~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 138 RFPLPL--EHADANLETAVFDPWG-NLWFTGQ-IGAYGRLDPARNVISVFPAP--QGGGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred Eeeccc--ccCCCcccceeeCCCc-cEEEeec-cccceecCcccCceeeeccC--CCCCCcceEECCCCcEEEEeccccc
Confidence 333332 2334566677777776 5555554 22211222223344444433 3455678999999998888777888
Q ss_pred EEEEECCCceeeEeee--cccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 466 LYCFSHQSGKLEHLMK--VHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 466 i~iwd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
|-..|..++.....-. .....-..+--+|.+..-+|....+.+..+||
T Consensus 212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdP 261 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDP 261 (353)
T ss_pred eEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCc
Confidence 8888877763322211 11223344555677787777777778877776
No 429
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.28 E-value=0.62 Score=39.84 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=88.5
Q ss_pred CccEEEEEEcCCCCEEEEEeC-C---------CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEE-eeCCCcEE
Q 010324 264 DETVLCIEFSRDSEMLASGSQ-D---------GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILS-TSFDSTAR 332 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~-d---------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~ 332 (513)
....+.-..+|+|++.+ |.. | |.++.|-.. ++ +..+. ..-.--+.++|+.+.+.+.. -+.+-.|.
T Consensus 108 knR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~-h~-v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG-HQ-VELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCceee-eeeccccccccccccEEEEeccC-CC-ceeee-hhccCCccccccccCcEEEEEccCceEEe
Confidence 45566677889999843 332 1 344444322 11 22221 12223356889887777654 45566777
Q ss_pred EEe--cCCCc-----eeeEecc----cccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceee
Q 010324 333 IHG--LKSGK-----LLKEFRG----HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVN 401 (513)
Q Consensus 333 i~d--~~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 401 (513)
-|| ..+|. .+..++. .....-.++...+|+..++.-..|+|...|..+|+.+..+..+. ..++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt------~qit 257 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT------PQIT 257 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC------CceE
Confidence 777 55553 2333322 11223456667789999999999999999999999999988663 4788
Q ss_pred EEEecCCCCCeEEEE
Q 010324 402 SVHLFPKNPDHIVVC 416 (513)
Q Consensus 402 ~~~~~~~~~~~l~~~ 416 (513)
+++|-..+-..+++.
T Consensus 258 sccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVT 272 (310)
T ss_pred EEEecCCCccEEEEE
Confidence 888876543444443
No 430
>PHA03098 kelch-like protein; Provisional
Probab=96.28 E-value=0.58 Score=47.49 Aligned_cols=197 Identities=11% Similarity=0.078 Sum_probs=90.2
Q ss_pred CCCCEEEEEecCC------eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC-----CcEEEE
Q 010324 223 PDGQFLVSCSFDG------FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD-----GKIKVW 291 (513)
Q Consensus 223 ~~g~~la~g~~dg------~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----g~i~vw 291 (513)
.++..++.||.++ .+ ..||..+.+-..... +.........+.+ ++...+.||.+ ..+..|
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v-~~yd~~~~~W~~~~~------~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~y 363 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSV-VSYDTKTKSWNKVPE------LIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESW 363 (534)
T ss_pred ECCEEEEECCCcCCCCeeccE-EEEeCCCCeeeECCC------CCcccccceEEEE--CCEEEEEeCCCCCEecceEEEE
Confidence 3556677776543 35 367766654322111 1101111222222 56777777765 357778
Q ss_pred EcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC------CcEEEEecCCCceeeEecccccceeEEEEccCCCEEE
Q 010324 292 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD------STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVV 365 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 365 (513)
|..+++-...-.......-.+++. -++...+.|+.+ ..+..||+.+++....-......-...+...++..++
T Consensus 364 d~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv 442 (534)
T PHA03098 364 KPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYV 442 (534)
T ss_pred cCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEE
Confidence 877654322111011111112222 256677777632 3578899876643321111111111112223556666
Q ss_pred EEeCCC--------cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC-----CcEEEEEccCeEE
Q 010324 366 TASSDC--------TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-----SSIYIMTLQGQVV 432 (513)
Q Consensus 366 ~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~ 432 (513)
.|+.++ .+.+||..+.+-...-..+.+ ......+.+ ++.+++.|+.+ ..+..||......
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~----r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP----RINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcc----cccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 666432 388889887643221111110 111111122 22566666543 4577777765544
Q ss_pred EEee
Q 010324 433 KSFS 436 (513)
Q Consensus 433 ~~~~ 436 (513)
..+.
T Consensus 516 ~~~~ 519 (534)
T PHA03098 516 TLFC 519 (534)
T ss_pred EecC
Confidence 4443
No 431
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.22 E-value=0.86 Score=40.89 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=88.8
Q ss_pred CeEEEEEccCCCEEEEee---CCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEe-CCCCcee
Q 010324 309 GVTSLVFSRDGSQILSTS---FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD-LKSTDCL 384 (513)
Q Consensus 309 ~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~ 384 (513)
.+.+.++++++..++... ....++++.. +....... ....+....|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887665 2334555543 33333222 223688889999987766666666666663 3333322
Q ss_pred E-eecCCCCCCCCCceeeEEEecCCCCCeEEEEc--CCCcEEEEEcc---CeEEEE----eecCccCCCcEEEEEECCCC
Q 010324 385 Q-TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN--KTSSIYIMTLQ---GQVVKS----FSSGKREGGDFVAACVSPKG 454 (513)
Q Consensus 385 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~~~~i~i~d~~---~~~~~~----~~~~~~~~~~~~~~~~s~~~ 454 (513)
. ..... .....|.++.++|++....++.. .++.+++--+. ...... ..........+..+.|.+++
T Consensus 102 ~~~v~~~----~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 102 PVEVDWP----GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred eEEeccc----ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 1 11111 11128999999999966555552 35677776553 110111 11111224568899999999
Q ss_pred CEEEEEecCc
Q 010324 455 EWIYCVGEDR 464 (513)
Q Consensus 455 ~~l~~g~~dg 464 (513)
.+++.+...+
T Consensus 178 ~L~V~~~~~~ 187 (253)
T PF10647_consen 178 TLVVLGRSAG 187 (253)
T ss_pred EEEEEeCCCC
Confidence 9888777444
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.048 Score=56.66 Aligned_cols=158 Identities=13% Similarity=-0.013 Sum_probs=97.8
Q ss_pred eeeccccCceeEEEECCCCCEEEEEe-cCCeEEEEEeccccccccccc---cccccccccCCccEEEEEEcCCC-CEEEE
Q 010324 207 TIKFGTKSHAECARFSPDGQFLVSCS-FDGFIEVVWDYLSGKLKKDLQ---YQADETFMMHDETVLCIEFSRDS-EMLAS 281 (513)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~g~~la~g~-~dg~i~~iwd~~~~~~~~~~~---~~~~~~~~~h~~~v~~l~~~~~~-~~l~s 281 (513)
.++....-.|..+...+|+...++.. .+|.+.+.+|+.+-....... +....+......-..++.|+|.- ...+.
T Consensus 94 t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av 173 (1405)
T KOG3630|consen 94 TFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAV 173 (1405)
T ss_pred ceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhh
Confidence 33434455666677777877655433 334433588886533222111 11111222234456788899843 24566
Q ss_pred EeCCCcEEEEEcCCcce-eeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecc----cccceeEEE
Q 010324 282 GSQDGKIKVWRIRSGQC-LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG----HSSYVNDAI 356 (513)
Q Consensus 282 ~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~ 356 (513)
+..|+.|++..+..... +..+ ......++++|+|.|+.++.|-..|++.-|.. +.+....+.+ ....|.+++
T Consensus 174 ~l~dlsl~V~~~~~~~~~v~s~--p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 174 DLSDLSLRVKSTKQLAQNVTSF--PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred hccccchhhhhhhhhhhhhccc--CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEE
Confidence 67799999887653322 2222 45677899999999999999999999998875 4554444433 246899999
Q ss_pred EccCCCEEEEE
Q 010324 357 FTNDGSRVVTA 367 (513)
Q Consensus 357 ~~~~~~~l~~~ 367 (513)
|-..-.++++-
T Consensus 251 Wl~t~eflvvy 261 (1405)
T KOG3630|consen 251 WLSTQEFLVVY 261 (1405)
T ss_pred EecceeEEEEe
Confidence 98766666543
No 433
>PRK13684 Ycf48-like protein; Provisional
Probab=96.14 E-value=1.2 Score=41.86 Aligned_cols=277 Identities=12% Similarity=0.065 Sum_probs=133.9
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccc-cccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLS-GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 289 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 289 (513)
+-...+.++.|....+-+|+|. +|. ||...+ |+.-...... +......+.++.|.++ ..+++ +..|.|.
T Consensus 43 ~~~~~l~~v~F~d~~~g~avG~-~G~---il~T~DgG~tW~~~~~~----~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~ 112 (334)
T PRK13684 43 PTEANLLDIAFTDPNHGWLVGS-NRT---LLETNDGGETWEERSLD----LPEENFRLISISFKGD-EGWIV-GQPSLLL 112 (334)
T ss_pred CCCCceEEEEEeCCCcEEEEEC-CCE---EEEEcCCCCCceECccC----CcccccceeeeEEcCC-cEEEe-CCCceEE
Confidence 3455788899986667677775 554 444433 3322211110 1012344778888754 33444 4455433
Q ss_pred EEEcCCcceeeecccc--c-ccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEec-ccccceeEEEEccCCCEEE
Q 010324 290 VWRIRSGQCLRRLERA--H-SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR-GHSSYVNDAIFTNDGSRVV 365 (513)
Q Consensus 290 vwd~~~~~~~~~~~~~--~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~ 365 (513)
.- -+.|+.-..+... . .......+.. ++.. ..++..|.|..= ...|+.-..+. .....+.++.+.|++.+++
T Consensus 113 ~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~-~~~g~~G~i~~S-~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~ 188 (334)
T PRK13684 113 HT-TDGGKNWTRIPLSEKLPGSPYLITALG-PGTA-EMATNVGAIYRT-TDGGKNWEALVEDAAGVVRNLRRSPDGKYVA 188 (334)
T ss_pred EE-CCCCCCCeEccCCcCCCCCceEEEEEC-CCcc-eeeeccceEEEE-CCCCCCceeCcCCCcceEEEEEECCCCeEEE
Confidence 22 1223333222111 1 1122222222 2223 333445544322 12333322222 2245688899999876554
Q ss_pred EEeCCCcEEEEeCCCC-ceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCcc-CC
Q 010324 366 TASSDCTVKVWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKR-EG 442 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~-~~ 442 (513)
+ +..|.+..- .+.+ +.-..... .....++++.+.+++ ..+++ +..|.+.+-+.+ +........... ..
T Consensus 189 ~-g~~G~i~~s-~~~gg~tW~~~~~-----~~~~~l~~i~~~~~g-~~~~v-g~~G~~~~~s~d~G~sW~~~~~~~~~~~ 259 (334)
T PRK13684 189 V-SSRGNFYST-WEPGQTAWTPHQR-----NSSRRLQSMGFQPDG-NLWML-ARGGQIRFNDPDDLESWSKPIIPEITNG 259 (334)
T ss_pred E-eCCceEEEE-cCCCCCeEEEeeC-----CCcccceeeeEcCCC-CEEEE-ecCCEEEEccCCCCCccccccCCccccc
Confidence 4 445654432 1122 21111111 234577888888876 45444 455666543333 333332222111 22
Q ss_pred CcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeee---cccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 443 GDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK---VHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 443 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
..+..+.+.+++..++ ++.+|.+.. ....|+.-.... .-....+.+.|..++..++ .+..|.|.-|++
T Consensus 260 ~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 260 YGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred cceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 3467788888877555 445676653 334444322222 1123577788876666555 557898888764
No 434
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.03 E-value=0.78 Score=47.51 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=54.5
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccc----------ccccc---ccccccccccccCCccEEEEEEcCC---CC
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLS----------GKLKK---DLQYQADETFMMHDETVLCIEFSRD---SE 277 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~----------~~~~~---~~~~~~~~~~~~h~~~v~~l~~~~~---~~ 277 (513)
-.|..+.++|+|++||..|..|.. ++ .+.. |+..- .+..........+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 468889999999999999988866 33 2211 11110 1111111111234568999999995 57
Q ss_pred EEEEEeCCCcEEEEEcCCcc
Q 010324 278 MLASGSQDGKIKVWRIRSGQ 297 (513)
Q Consensus 278 ~l~s~~~dg~i~vwd~~~~~ 297 (513)
.|+.-..|+++++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888999999999997543
No 435
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.99 E-value=0.0018 Score=64.85 Aligned_cols=170 Identities=17% Similarity=0.237 Sum_probs=101.4
Q ss_pred eeeccccCceeEEEECC-CCCEEEEEecCCeEEEEEecc--ccccccccccccccccccCCccEEEEEEcC---CCCEEE
Q 010324 207 TIKFGTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYL--SGKLKKDLQYQADETFMMHDETVLCIEFSR---DSEMLA 280 (513)
Q Consensus 207 ~~~~~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~--~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~ 280 (513)
.+--|..+.|-.+.|-. +-..++ -.-|.. ++|+++ .|+....+...+...+ ...+.-+.|.| +.-++.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~l-fVy~vd~l~G~iq~~l~v~~~~p~---gs~~~~V~wcp~~~~~~~ic 199 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGEL-FVYDVDVLQGEIQPQLEVTPITPY---GSDPQLVSWCPIAVNKVYIC 199 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhh-heeehHhhccccccceEEeecCcC---CCCcceeeecccccccceee
Confidence 44447778888888854 222222 223556 589876 4665555544333322 23345555655 667788
Q ss_pred EEeCCCcEEEEEcCCcceeeecccccccCeEEEE-----------EccCCCEEEEeeCCCcEEEEecC-----CCceeeE
Q 010324 281 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLV-----------FSRDGSQILSTSFDSTARIHGLK-----SGKLLKE 344 (513)
Q Consensus 281 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~ 344 (513)
.+..++.|++.++.+... .+..+|...+..++ .+|||..++.++.||.++.|.+- ...++..
T Consensus 200 ~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe 277 (1283)
T KOG1916|consen 200 YGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE 277 (1283)
T ss_pred eccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence 888889999887765432 22234665555443 58999999999999998887653 3345566
Q ss_pred ecccc-cceeEEEEccCC---------CEEEEEeC-CCcEEEEeCCCCcee
Q 010324 345 FRGHS-SYVNDAIFTNDG---------SRVVTASS-DCTVKVWDLKSTDCL 384 (513)
Q Consensus 345 ~~~~~-~~v~~~~~~~~~---------~~l~~~~~-dg~i~iwd~~~~~~~ 384 (513)
++.|. .+-.|..++.+. .++++++. +..+++|.-...+|.
T Consensus 278 wkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 278 WKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 66665 333333344321 13444443 456899987776665
No 436
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.93 E-value=0.00098 Score=62.19 Aligned_cols=145 Identities=17% Similarity=0.288 Sum_probs=100.5
Q ss_pred EEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEE-EeCCCcEEEEEcCCc
Q 010324 218 CARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS-GSQDGKIKVWRIRSG 296 (513)
Q Consensus 218 ~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~~~dg~i~vwd~~~~ 296 (513)
...|-|.+.-++.++.+..+. .||-.. +...... .++....|+|..+++.++. +-..+.+.+||+.+.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~-~YD~ag-q~~le~n---------~tg~aldm~wDkegdvlavlAek~~piylwd~n~e 107 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVI-YYDKAG-QVILELN---------PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE 107 (615)
T ss_pred eeeEecCCCceehhhhhhHHH-hhhhhc-ceecccC---------CchhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence 346777676688888888885 888443 3222222 3456677889888876554 455789999998765
Q ss_pred ceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEE
Q 010324 297 QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV 375 (513)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 375 (513)
.. ..+..+....-.-+.|++.+..++.+...|.+.+++..+.+.+-..-.|..+++++++.+.+ +.+.++.|..+.+
T Consensus 108 yt-qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 108 YT-QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSV 184 (615)
T ss_pred hH-HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHH
Confidence 42 22322333333348899999999999999999999988776666665588889999999975 4555666655444
No 437
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.87 E-value=1.6 Score=41.08 Aligned_cols=188 Identities=18% Similarity=0.248 Sum_probs=106.4
Q ss_pred cCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEc----cCCCE--EEEEe-CC---CcEEEEeCC--CCcee
Q 010324 317 RDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT----NDGSR--VVTAS-SD---CTVKVWDLK--STDCL 384 (513)
Q Consensus 317 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---g~i~iwd~~--~~~~~ 384 (513)
|...+++....++-+.+||+ .|+.+..+.. +.++.+..- -.|+. |+.++ .+ .+|++|.+. ++. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 45567888888899999999 6777776642 334444332 13432 34443 32 469999765 332 3
Q ss_pred EeecCC-CCCCCCCceeeEEEec--CC-CCCeEEEEcCCCcEEEEEcc----C----eEEEEeecCccCCCcEEEEEECC
Q 010324 385 QTFKPP-PPLRGGDASVNSVHLF--PK-NPDHIVVCNKTSSIYIMTLQ----G----QVVKSFSSGKREGGDFVAACVSP 452 (513)
Q Consensus 385 ~~~~~~-~~~~~~~~~v~~~~~~--~~-~~~~l~~~~~~~~i~i~d~~----~----~~~~~~~~~~~~~~~~~~~~~s~ 452 (513)
..+... .+.......+..+|+. +. +.-++++...+|.+.-|.+. + ..++.+.. .+.+-.|....
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EGCVVDD 217 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----GSQPEGCVVDD 217 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----SS-EEEEEEET
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----CCcceEEEEec
Confidence 332211 1111122346667764 33 33467778889988888774 2 23555544 34577888888
Q ss_pred CCCEEEEEecCceEEEEECCCc-----eeeEeeec--ccCCeEEEEEcC--CC-CEEEEEE-CCCeEEecc
Q 010324 453 KGEWIYCVGEDRNLYCFSHQSG-----KLEHLMKV--HEKDVIGVTHHP--HR-NLLATYG-EDCTMKLWK 512 (513)
Q Consensus 453 ~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~--h~~~v~~~~~~p--~~-~~l~s~~-~dg~i~iWd 512 (513)
...+|+.|-++--|.-|+.... +.+....+ ....|-.++.-. ++ .+|+.++ .+++..||+
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 8899999999999999988632 22322222 345677777743 33 3444444 677888886
No 438
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.81 E-value=1.3 Score=39.67 Aligned_cols=202 Identities=13% Similarity=0.073 Sum_probs=112.8
Q ss_pred CeEEEEEccCCCEEEEeeCCCcEEEEecC------CC-ceeeEecc-----cccceeEEEEccCCC------------EE
Q 010324 309 GVTSLVFSRDGSQILSTSFDSTARIHGLK------SG-KLLKEFRG-----HSSYVNDAIFTNDGS------------RV 364 (513)
Q Consensus 309 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l 364 (513)
.-+.++++|.+..-++....+...+||.. .. ..+..+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999888888888899999986 12 22333332 134577777774322 36
Q ss_pred EEEeCCCcEEEEeCCCCce---eEeecCCCCCCCCCceeeEEEecC--CCCCeEEEEcCCCcEEEEEccCeEEEE---ee
Q 010324 365 VTASSDCTVKVWDLKSTDC---LQTFKPPPPLRGGDASVNSVHLFP--KNPDHIVVCNKTSSIYIMTLQGQVVKS---FS 436 (513)
Q Consensus 365 ~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~~~~i~i~d~~~~~~~~---~~ 436 (513)
+.+++||+|.-|...-... ...+..... ........+++.. .+..+.++--..++|.++|-.-..+.. +.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s--~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDAS--QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccC--CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 7788999999998543222 111111100 0112223344432 233444555577899999876333211 11
Q ss_pred cCccC-C----------C--cEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeee--cccCCeEEEEEcC------C
Q 010324 437 SGKRE-G----------G--DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK--VHEKDVIGVTHHP------H 495 (513)
Q Consensus 437 ~~~~~-~----------~--~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~p------~ 495 (513)
..... . + .|+-..-.+++..=+.|..-|.|-+||. .|++++.+. +.-...+.|+..| .
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 11000 0 0 1111112333333444555678999996 467776663 2334566787766 3
Q ss_pred CCEEEEEECCCeEEeccC
Q 010324 496 RNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 496 ~~~l~s~~~dg~i~iWdp 513 (513)
+.+|+--=.||+|..+||
T Consensus 261 g~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDP 278 (336)
T ss_pred CCeEEeecCCceeEEecC
Confidence 456655457999999996
No 439
>PHA02790 Kelch-like protein; Provisional
Probab=95.77 E-value=0.92 Score=45.17 Aligned_cols=186 Identities=6% Similarity=-0.072 Sum_probs=85.2
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC--CcEEEEecCCCceeeEecc
Q 010324 275 DSEMLASGSQDG-----KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD--STARIHGLKSGKLLKEFRG 347 (513)
Q Consensus 275 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~ 347 (513)
++..+++||.++ .+..||..++.....-.......-.+++ .-++...+.|+.+ ..+..||..+++... ...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEE-CCC
Confidence 355566676542 5677887765432211101111111222 2367777777754 357888876554322 111
Q ss_pred cccce-eEEEEccCCCEEEEEeCCC---cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEE
Q 010324 348 HSSYV-NDAIFTNDGSRVVTASSDC---TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 423 (513)
Q Consensus 348 ~~~~v-~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 423 (513)
-..+. ......-+|+..+.|+.++ .+..||.++.+-.. .++... .... .+++. -++.+.+.| |.+.
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~--~~~m~~--~r~~-~~~~~--~~~~IYv~G---G~~e 418 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF--GPSTYY--PHYK-SCALV--FGRRLFLVG---RNAE 418 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe--CCCCCC--cccc-ceEEE--ECCEEEEEC---CceE
Confidence 11111 1112233577777777553 46788887654221 111110 0011 11211 122455555 3467
Q ss_pred EEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC-----ceEEEEECCCc
Q 010324 424 IMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-----RNLYCFSHQSG 474 (513)
Q Consensus 424 i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~ 474 (513)
+||................... .+..-+|+..++||.+ ..+.+||..++
T Consensus 419 ~ydp~~~~W~~~~~m~~~r~~~--~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 419 FYCESSNTWTLIDDPIYPRDNP--ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EecCCCCcEeEcCCCCCCcccc--EEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 7887755444443322111111 1223356666777643 24555665543
No 440
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=95.59 E-value=2.9 Score=42.01 Aligned_cols=242 Identities=10% Similarity=0.127 Sum_probs=105.3
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCc-c----eeeeccc--ccccCeEEEEEcc-----CCCEEEE--eeCCC
Q 010324 264 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG-Q----CLRRLER--AHSEGVTSLVFSR-----DGSQILS--TSFDS 329 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~-~----~~~~~~~--~~~~~v~~~~~~~-----~~~~l~~--~~~dg 329 (513)
...-..++.+|.|+.++.+..+|.+.++-+... . ....+.. .....|.+++|.. +...++. ....+
T Consensus 43 ~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~ 122 (504)
T PF10433_consen 43 SQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQR 122 (504)
T ss_dssp -TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-
T ss_pred hcCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecc
Confidence 455678999999999999999999999998871 0 0011100 1256678888875 2334443 22222
Q ss_pred --cEEE--EecCCCcee------eE--ec-ccccceeEEEEccC-CCEEEEEeCCCcEEEEeCCC--C-ceeEeecCCCC
Q 010324 330 --TARI--HGLKSGKLL------KE--FR-GHSSYVNDAIFTND-GSRVVTASSDCTVKVWDLKS--T-DCLQTFKPPPP 392 (513)
Q Consensus 330 --~i~i--~d~~~~~~~------~~--~~-~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~--~-~~~~~~~~~~~ 392 (513)
.+.. |+...+-.. .. +. ....+ .-+.--|. ...+++++. +.+.+-+... + .....+..+.
T Consensus 123 ~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p-~~LIPlp~~~ggllV~~~-~~i~y~~~~~~~~~~~~~~~~~~~- 199 (504)
T PF10433_consen 123 RTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELP-SFLIPLPNPPGGLLVGGE-NIIIYKNHLIGSGDYSFLSIPSPP- 199 (504)
T ss_dssp EEEEEEEE--------EETTTTEEEE--EEEE-TT-EEEEEE-TTT-SEEEEES-SEEEEEE------TTEEEEE--H--
T ss_pred cceeEEEeeecccccceeeeeccccccccccCCCc-cEEEEcCCCCcEEEEECC-EEEEEecccccccccccccccCCc-
Confidence 2333 333322110 00 10 01112 11222222 223444433 3333332211 1 1111111100
Q ss_pred CCCCCceeeEEEe------cCCCCCeEEEEcCCCcEEEEEccCeE--EEEeecCccCCCcEEEEEECCCC-CEEEEEe--
Q 010324 393 LRGGDASVNSVHL------FPKNPDHIVVCNKTSSIYIMTLQGQV--VKSFSSGKREGGDFVAACVSPKG-EWIYCVG-- 461 (513)
Q Consensus 393 ~~~~~~~v~~~~~------~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~-- 461 (513)
.....-+.+... ...+...++.+..+|.++...+.... +.....+.. .....++++-.+| .++++|+
T Consensus 200 -~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~-~~~~s~l~~l~~g~d~lf~gs~~ 277 (504)
T PF10433_consen 200 -SSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTL-CSIASSLTYLKNGGDYLFVGSEF 277 (504)
T ss_dssp -HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE---S-ESEEEEESTT--EEEEEESS
T ss_pred -cCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCc-CChhheEEEEcCCCEEEEEEEec
Confidence 001112233322 33445789999999999999887322 111111110 2223455554443 5788887
Q ss_pred cCceEEEEECCCceeeEeeecccCCeEEEEEcCC----CC------EEEEEE---CCCeEEec
Q 010324 462 EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH----RN------LLATYG---EDCTMKLW 511 (513)
Q Consensus 462 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~----~~------~l~s~~---~dg~i~iW 511 (513)
.|+.++-|....-+.+..+. .-+||.+++.-+. .. .|++++ .+|.+++.
T Consensus 278 gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~l 339 (504)
T PF10433_consen 278 GDSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRIL 339 (504)
T ss_dssp S-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEE
T ss_pred CCcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEE
Confidence 45667777755555566665 3478998888532 11 455554 56778764
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.58 E-value=0.0018 Score=60.59 Aligned_cols=144 Identities=12% Similarity=0.121 Sum_probs=104.2
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeE
Q 010324 352 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV 431 (513)
Q Consensus 352 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 431 (513)
.....|.|.+.-++.++.+-.+..||-. ++...... ..+....++|..+++..++.+...+.+++||+....
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-------~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-------PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-------CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 3445678877778888888889999854 34333332 223456677888787888889999999999998554
Q ss_pred EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCC
Q 010324 432 VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDC 506 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 506 (513)
...+..+..+... -+.|++.+..++.|...|.+.+++..+.+.+.....|...+++++|.+.+. .+.++.|.
T Consensus 109 tqqLE~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 109 TQQLESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred HHHHhccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence 4444433322222 267899999999999999999999988877777666999999999998654 34454443
No 442
>PHA02790 Kelch-like protein; Provisional
Probab=95.54 E-value=0.64 Score=46.28 Aligned_cols=180 Identities=10% Similarity=-0.000 Sum_probs=84.7
Q ss_pred CCCEEEEeeCCC-----cEEEEecCCCceeeE--ecccccceeEEEEccCCCEEEEEeCC--CcEEEEeCCCCceeEeec
Q 010324 318 DGSQILSTSFDS-----TARIHGLKSGKLLKE--FRGHSSYVNDAIFTNDGSRVVTASSD--CTVKVWDLKSTDCLQTFK 388 (513)
Q Consensus 318 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~ 388 (513)
++..+++|+.++ .+..||..+++.... +........ + ..-++...+.|+.+ ..+..||..+++-.. ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-G-VPANNKLYVVGGLPNPTSVERWFHGDAAWVN-MP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-E-EEECCEEEEECCcCCCCceEEEECCCCeEEE-CC
Confidence 344556666442 466788776543221 111111111 2 22356777777753 357888876543211 11
Q ss_pred CCCCCCCCCceeeEEEecCCCCCeEEEEcCC---CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCce
Q 010324 389 PPPPLRGGDASVNSVHLFPKNPDHIVVCNKT---SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRN 465 (513)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 465 (513)
+.. ...... +++. .++.+.+.|+.+ ..+..||.................. ..+..-+|+..+.| |.
T Consensus 348 ~l~---~~r~~~-~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--~~~~~~~~~IYv~G---G~ 416 (480)
T PHA02790 348 SLL---KPRCNP-AVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--SCALVFGRRLFLVG---RN 416 (480)
T ss_pred CCC---CCCccc-EEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--ceEEEECCEEEEEC---Cc
Confidence 111 111111 1111 123666666654 3467788775544443322211111 12223455555555 35
Q ss_pred EEEEECCCceee--EeeecccCCeEEEEEcCCCCEEEEEECC-----CeEEeccC
Q 010324 466 LYCFSHQSGKLE--HLMKVHEKDVIGVTHHPHRNLLATYGED-----CTMKLWKP 513 (513)
Q Consensus 466 i~iwd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~~~d-----g~i~iWdp 513 (513)
+.+||..+++-. ..+.........+.. ++.+.+.||.+ .+|..|||
T Consensus 417 ~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred eEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEEC
Confidence 678888765432 222221222222333 67788888754 35667775
No 443
>PRK13684 Ycf48-like protein; Provisional
Probab=95.33 E-value=2.5 Score=39.70 Aligned_cols=179 Identities=13% Similarity=0.093 Sum_probs=93.1
Q ss_pred eCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEE-EecCCCceeeEe-cccccceeEEEEccC
Q 010324 283 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARI-HGLKSGKLLKEF-RGHSSYVNDAIFTND 360 (513)
Q Consensus 283 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~-~~~~~~v~~~~~~~~ 360 (513)
+..|.|..= .+.|+.-..+.......+.++.+.|++.+++++. .|.+.. +| ..++.-... ......++++.+.++
T Consensus 149 g~~G~i~~S-~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~ 225 (334)
T PRK13684 149 TNVGAIYRT-TDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPD 225 (334)
T ss_pred eccceEEEE-CCCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCC
Confidence 344444322 2334444444333456788999999886665554 565543 22 122222222 233567899999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCcc
Q 010324 361 GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKR 440 (513)
Q Consensus 361 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 440 (513)
++.++++ ..|.+++=....+..-.....+. ......+.++.+.+.+ . +++++.+|.+..-.-.+...........
T Consensus 226 g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~--~~~~~~l~~v~~~~~~-~-~~~~G~~G~v~~S~d~G~tW~~~~~~~~ 300 (334)
T PRK13684 226 GNLWMLA-RGGQIRFNDPDDLESWSKPIIPE--ITNGYGYLDLAYRTPG-E-IWAGGGNGTLLVSKDGGKTWEKDPVGEE 300 (334)
T ss_pred CCEEEEe-cCCEEEEccCCCCCccccccCCc--cccccceeeEEEcCCC-C-EEEEcCCCeEEEeCCCCCCCeECCcCCC
Confidence 8866654 55766432334443222111110 1122456778888754 3 5556667766543222444333322111
Q ss_pred CCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 441 EGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 441 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
.......+.+..+++.+ +.+..|.|..|+
T Consensus 301 ~~~~~~~~~~~~~~~~~-~~G~~G~il~~~ 329 (334)
T PRK13684 301 VPSNFYKIVFLDPEKGF-VLGQRGVLLRYV 329 (334)
T ss_pred CCcceEEEEEeCCCceE-EECCCceEEEec
Confidence 12346677776666554 455678887765
No 444
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.29 E-value=0.75 Score=46.37 Aligned_cols=99 Identities=15% Similarity=0.127 Sum_probs=67.0
Q ss_pred CeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEE--CCCCCEEEEEecCceEEEEECC-----C----ceeeEe
Q 010324 411 DHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACV--SPKGEWIYCVGEDRNLYCFSHQ-----S----GKLEHL 479 (513)
Q Consensus 411 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~~g~~dg~i~iwd~~-----~----~~~~~~ 479 (513)
...++.+....+.|||.++.....-... .....|..+.| .|+|+.+.+.|..+.|.++.-. . ..++..
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~ 120 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK 120 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence 4555555667899999996654333332 34567888888 6899999999999999998542 1 122222
Q ss_pred --eeccc-CCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 480 --MKVHE-KDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 480 --~~~h~-~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+..|+ .+|.+..|.++|.+++.+| +.+.|+|
T Consensus 121 i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 121 IDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred EEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 23344 5899999999998776654 3566665
No 445
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.13 E-value=2.1 Score=40.90 Aligned_cols=149 Identities=14% Similarity=0.115 Sum_probs=80.2
Q ss_pred cCeEEEEEccCCCEEEEee-----------CCC-cEEEEecCC--Cc--eeeEecccccceeEEEEccCCCEEEEEeCCC
Q 010324 308 EGVTSLVFSRDGSQILSTS-----------FDS-TARIHGLKS--GK--LLKEFRGHSSYVNDAIFTNDGSRVVTASSDC 371 (513)
Q Consensus 308 ~~v~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 371 (513)
.....++|.++|+.+++-. ..+ .|.+++-.+ |+ ....+.........+++.++| |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3456789999998776642 223 677776443 22 223343334456889999988 44444444
Q ss_pred cEEEEeCCCC-----ceeEeecCCCCC-CCCCceeeEEEecCCCCCeEEEEcC-------------------CCcEEEEE
Q 010324 372 TVKVWDLKST-----DCLQTFKPPPPL-RGGDASVNSVHLFPKNPDHIVVCNK-------------------TSSIYIMT 426 (513)
Q Consensus 372 ~i~iwd~~~~-----~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~-------------------~~~i~i~d 426 (513)
..++.|.... +....+...... ..+......+.+.|++ .+.++.+. .+.+.-++
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3334354321 111111111100 1123457788899987 44443331 14466666
Q ss_pred ccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEec
Q 010324 427 LQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGE 462 (513)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 462 (513)
.++.....+.... .....++|+++|+++++-..
T Consensus 171 pdg~~~e~~a~G~---rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 171 PDGGKLRVVAHGF---QNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCeEEEEecCc---CCCccceECCCCCEEEEccC
Confidence 6665555554432 23567899999988766443
No 446
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.12 E-value=2.6 Score=39.51 Aligned_cols=151 Identities=16% Similarity=0.327 Sum_probs=88.7
Q ss_pred cceeEEEEccCCCEEEEEeCCCc------EEEEeCCCC----ceeEe-----ecCC--CCCCCCCceeeEEEecCCCCCe
Q 010324 350 SYVNDAIFTNDGSRVVTASSDCT------VKVWDLKST----DCLQT-----FKPP--PPLRGGDASVNSVHLFPKNPDH 412 (513)
Q Consensus 350 ~~v~~~~~~~~~~~l~~~~~dg~------i~iwd~~~~----~~~~~-----~~~~--~~~~~~~~~v~~~~~~~~~~~~ 412 (513)
+.++.+.+.+++..+++.+.+|. +..+++... ..+.. +... ..........-++++ +.++.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecCCCE
Confidence 45788899876667777788887 666665531 11110 0000 001111124457777 444477
Q ss_pred EEEEcCC------CcEEEEEccCeEEEEeec------------CccCCCcEEEEEECCCCCEEEEEec-----Cc-----
Q 010324 413 IVVCNKT------SSIYIMTLQGQVVKSFSS------------GKREGGDFVAACVSPKGEWIYCVGE-----DR----- 464 (513)
Q Consensus 413 l~~~~~~------~~i~i~d~~~~~~~~~~~------------~~~~~~~~~~~~~s~~~~~l~~g~~-----dg----- 464 (513)
+++.-.+ ..|+.++.+|.....+.. ....+..+-.++++|+|+.|+++.+ |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 7877777 889999988766554421 1224556789999999997776653 22
Q ss_pred ------eEEEEECCC-ceeeEe----eec-----ccCCeEEEEEcCCCCEEEE
Q 010324 465 ------NLYCFSHQS-GKLEHL----MKV-----HEKDVIGVTHHPHRNLLAT 501 (513)
Q Consensus 465 ------~i~iwd~~~-~~~~~~----~~~-----h~~~v~~~~~~p~~~~l~s 501 (513)
.|..||..+ +..... +.. ....|+.+.+-+++++|+-
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 234455554 322222 221 3456888999998886653
No 447
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=2.3 Score=37.90 Aligned_cols=113 Identities=11% Similarity=0.109 Sum_probs=74.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccc-cCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc--
Q 010324 264 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHS-EGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK-- 340 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-- 340 (513)
.+.+..+.++ +++...+..+.-+++.|+.+......+..-.. +--.++.. .|++..++..|.-+.+.|+.+..
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 4556677776 45777777788899999987665443321122 33334444 58899999877777788886543
Q ss_pred -eeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 010324 341 -LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 382 (513)
Q Consensus 341 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 382 (513)
...+.......-..++.+ |++-..+..|+-+.+-|+....
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~ 202 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPH 202 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCC
Confidence 233343334444556666 6788888889999999998654
No 448
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.90 E-value=6.3 Score=41.90 Aligned_cols=166 Identities=15% Similarity=0.146 Sum_probs=97.0
Q ss_pred cccCceeEEEEC---C----CCCEEEEEecCCeEEEEEecccccc-------cccccccccccccc---CCccEEEEEEc
Q 010324 211 GTKSHAECARFS---P----DGQFLVSCSFDGFIEVVWDYLSGKL-------KKDLQYQADETFMM---HDETVLCIEFS 273 (513)
Q Consensus 211 ~h~~~v~~~~~s---~----~g~~la~g~~dg~i~~iwd~~~~~~-------~~~~~~~~~~~~~~---h~~~v~~l~~~ 273 (513)
.-..+|..++|. . ..++|++=....+. |....-.+. ...+...+...+.. ...+..+++|+
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~--I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~Fn 154 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTT--ILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFN 154 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEE--EEEcccccccccccCCccccccceeEEechhhcCCCccceEEec
Confidence 456778888887 2 23466665544433 665221111 11122222222221 24577899999
Q ss_pred C-CCCEEEEEeCCCcEEEEEcCCcce----eeecccc----------cccCeEEEEEccCCCEEEEeeCCCcEEEEecCC
Q 010324 274 R-DSEMLASGSQDGKIKVWRIRSGQC----LRRLERA----------HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 338 (513)
Q Consensus 274 ~-~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 338 (513)
| +...||.....|...||++..+.. ....... ..+.-..+.|.++.+.|++++ ...+.++|+++
T Consensus 155 P~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 155 PWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFES 233 (765)
T ss_pred cCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCC
Confidence 9 566899999999999999921110 1111101 112344788988888888877 56788999987
Q ss_pred Cceee--EecccccceeEEEEccCCC-EEEEEeCCCcEEEEeCCC
Q 010324 339 GKLLK--EFRGHSSYVNDAIFTNDGS-RVVTASSDCTVKVWDLKS 380 (513)
Q Consensus 339 ~~~~~--~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 380 (513)
..... ........|.++.-+|... +++.-+ ...|...|+..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 76533 1223456788888888622 222222 25677778776
No 449
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=1.7 Score=36.61 Aligned_cols=180 Identities=16% Similarity=0.139 Sum_probs=106.2
Q ss_pred CCCEEEEEec--CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCcceee
Q 010324 224 DGQFLVSCSF--DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA-SGSQDGKIKVWRIRSGQCLR 300 (513)
Q Consensus 224 ~g~~la~g~~--dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~ 300 (513)
+|.++.+.+. ...|+ .||+.+|+.+...+..+...| ...++.+ |+++. -.-.+|....+|..+-+++.
T Consensus 55 ~g~i~esTG~yg~S~ir-~~~L~~gq~~~s~~l~~~~~F---gEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 55 DGHILESTGLYGFSKIR-VSDLTTGQEIFSEKLAPDTVF---GEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred CCEEEEeccccccceeE-EEeccCceEEEEeecCCcccc---ccceeec-----cceEEEEEeccceeEEEChHHhhhhc
Confidence 4556666553 34686 999998887765544321111 1112111 22222 22358888999999988887
Q ss_pred ecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecc--cc---cceeEEEEccCCCEEEEEeCCCcEEE
Q 010324 301 RLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG--HS---SYVNDAIFTNDGSRVVTASSDCTVKV 375 (513)
Q Consensus 301 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~dg~i~i 375 (513)
.+. ..+.=+.++- |+..|+.++...+++.-|.++.....+... .. ..++.+.|- +|...+-.=.+..|..
T Consensus 126 ~~~--y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~r 200 (262)
T COG3823 126 RFS--YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIAR 200 (262)
T ss_pred ccc--cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEE
Confidence 775 3333445544 566677777677888888776654443321 11 223444453 4656665555666777
Q ss_pred EeCCCCceeEeecCCCC------CCCCCceeeEEEecCCCCCeEEEEc
Q 010324 376 WDLKSTDCLQTFKPPPP------LRGGDASVNSVHLFPKNPDHIVVCN 417 (513)
Q Consensus 376 wd~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~~~~ 417 (513)
.|..+|+.+..+....- ...+....+.+++.|....++++|-
T Consensus 201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 78888887776653321 1233456778899888866676664
No 450
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.70 E-value=2 Score=43.86 Aligned_cols=151 Identities=14% Similarity=0.142 Sum_probs=91.9
Q ss_pred CCEEEEEecCCeEEEEEecccccccc------ccccccc------c---ccccCCccEEEEEEcC--CCCEEEEEeCCCc
Q 010324 225 GQFLVSCSFDGFIEVVWDYLSGKLKK------DLQYQAD------E---TFMMHDETVLCIEFSR--DSEMLASGSQDGK 287 (513)
Q Consensus 225 g~~la~g~~dg~i~~iwd~~~~~~~~------~~~~~~~------~---~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~ 287 (513)
++++++|. .+.|. ||+...-.... .+...+. . ... ....|+.|.... +...|+.|..||.
T Consensus 49 ~n~LFiA~-~s~I~-Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~ 125 (717)
T PF08728_consen 49 RNLLFIAY-QSEIY-VYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGD 125 (717)
T ss_pred CCEEEEEE-CCEEE-EEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCe
Confidence 66777766 67784 99986433211 0100000 0 011 234466665544 5568999999999
Q ss_pred EEEEEcCC-------c----ce-------eeecccccccCeEEEEEc--cCCCEEEEeeCCCcEEEEecCCC--ce-eeE
Q 010324 288 IKVWRIRS-------G----QC-------LRRLERAHSEGVTSLVFS--RDGSQILSTSFDSTARIHGLKSG--KL-LKE 344 (513)
Q Consensus 288 i~vwd~~~-------~----~~-------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~--~~-~~~ 344 (513)
|.+|.+++ . .. ...+.......+++++++ ...++||+++....|.||-.... +. ...
T Consensus 126 V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 126 VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 99997631 0 00 001111234578999998 78888888888888888755432 11 111
Q ss_pred ecccccceeEEEEccCC---C---EEEEEeCCCcEEEEeC
Q 010324 345 FRGHSSYVNDAIFTNDG---S---RVVTASSDCTVKVWDL 378 (513)
Q Consensus 345 ~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~iwd~ 378 (513)
-..+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11245568899997643 2 7888888999999887
No 451
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=3 Score=37.18 Aligned_cols=195 Identities=10% Similarity=0.114 Sum_probs=107.8
Q ss_pred ccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 212 TKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
..+-+..+.++. ++...+..+.-++ |.|+.+......... + ...+--.++.. .|++...+..|.-+.+.
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~-IvDIS~P~sP~~~~~-----l-nt~gyaygv~v--sGn~aYVadlddgfLiv 153 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLR-IVDISTPDSPTLIGF-----L-NTDGYAYGVYV--SGNYAYVADLDDGFLIV 153 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceE-EEeccCCCCcceecc-----c-cCCceEEEEEe--cCCEEEEeeccCcEEEE
Confidence 344556677764 4667777777786 999877543322211 0 01233344444 58888888877778888
Q ss_pred EcCCcce---eeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce---eeEecccccceeEEEEccCCCEEE
Q 010324 292 RIRSGQC---LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL---LKEFRGHSSYVNDAIFTNDGSRVV 365 (513)
Q Consensus 292 d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~ 365 (513)
|+.+.+. ..+.. .....-..++.+ |++-..+..|+-+.+.|+..... +.... ....+.++..+++-.+++
T Consensus 154 dvsdpssP~lagrya-~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~v 229 (370)
T COG5276 154 DVSDPSSPQLAGRYA-LPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLV 229 (370)
T ss_pred ECCCCCCceeeeeec-cCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEE
Confidence 9876543 22332 223333566665 77888888999999999975532 22222 223577777776654444
Q ss_pred EEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc
Q 010324 366 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 428 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~ 428 (513)
.. +--+.+-|..+.+....+..-. ...+.++.-.+-.+++......+.-+.+.|..
T Consensus 230 vy--~egvlivd~s~~ssp~~~gsye-----t~~p~~~s~v~Vs~~~~Yvadga~gl~~idis 285 (370)
T COG5276 230 VY--DEGVLIVDVSGPSSPTVFGSYE-----TSNPVSISTVPVSGEYAYVADGAKGLPIIDIS 285 (370)
T ss_pred Ec--ccceEEEecCCCCCceEeeccc-----cCCcccccceecccceeeeeccccCceeEecc
Confidence 43 3337777776554333322111 11122221112222555666666556666655
No 452
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.57 E-value=3.1 Score=39.05 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=85.2
Q ss_pred cCceeEEEECCCCCEEEEEecCCe------EEEEEeccc-cccccccccccccccccCCc--------cEEEEEEcCCCC
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGF------IEVVWDYLS-GKLKKDLQYQADETFMMHDE--------TVLCIEFSRDSE 277 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~------i~~iwd~~~-~~~~~~~~~~~~~~~~~h~~--------~v~~l~~~~~~~ 277 (513)
-+.++.+.+.|++..+++-+.+|. + +..++.. ......+.......+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRF-YTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcE-EEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 456788899865555666666666 4 2444433 11111111111111111111 344788877888
Q ss_pred EEEEEeCC------CcEEEEEcCCcceeeecc--------------cccccCeEEEEEccCCCEEEEeeC-----CC---
Q 010324 278 MLASGSQD------GKIKVWRIRSGQCLRRLE--------------RAHSEGVTSLVFSRDGSQILSTSF-----DS--- 329 (513)
Q Consensus 278 ~l~s~~~d------g~i~vwd~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~~-----dg--- 329 (513)
++++.-.+ ..|..++.. |+....+. ...+...-+++++|+|+.|+++.. |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88777666 678888865 65544431 124557889999999997776543 22
Q ss_pred --------cEEEEecCC-Ccee----eEecc-----cccceeEEEEccCCCEEEE
Q 010324 330 --------TARIHGLKS-GKLL----KEFRG-----HSSYVNDAIFTNDGSRVVT 366 (513)
Q Consensus 330 --------~i~i~d~~~-~~~~----~~~~~-----~~~~v~~~~~~~~~~~l~~ 366 (513)
.|..||..+ +... ..+.. ....|+.+.+.+++++++.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 233455544 2222 22222 3456888889888886654
No 453
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=2.2 Score=43.05 Aligned_cols=174 Identities=14% Similarity=0.180 Sum_probs=86.6
Q ss_pred CCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecC
Q 010324 328 DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP 407 (513)
Q Consensus 328 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (513)
--.|+|+++ +|..+.++.-..+.+..+.|+.+. .|++...+|++++|++-. +.+...... .......|..+.++.
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg--~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSVG--FESQMSDIVECRFFH 137 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch-hhhcccccc--cccccCceeEEEEec
Confidence 346888887 777777666555578899999764 678889999999999863 222221110 012223444444444
Q ss_pred CCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCC---EEEEEe-cCc-eEEEEECCCceeeEeee
Q 010324 408 KNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGE---WIYCVG-EDR-NLYCFSHQSGKLEHLMK 481 (513)
Q Consensus 408 ~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~---~l~~g~-~dg-~i~iwd~~~~~~~~~~~ 481 (513)
+-+++-..+|.+.+.+-. ..........+...-+..+...-+++. .++-.. ..| .+..-+..+.+... +.
T Consensus 138 ---~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~-~~ 213 (829)
T KOG2280|consen 138 ---NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA-LS 213 (829)
T ss_pred ---CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccc-cC
Confidence 234444455555544333 222333222111111112222222211 111111 011 01111111112211 11
Q ss_pred cccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 482 VHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 482 ~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
...+.+..+..||++++|+--..+|.|.+
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCcEEE
Confidence 12356778888888888888888887765
No 454
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.32 E-value=2.5 Score=40.66 Aligned_cols=147 Identities=12% Similarity=0.147 Sum_probs=84.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeE-eecCCCCCCCCCceeeEEEec---CCCCCeEEEEcCCCcEEEEEcc---Ce---
Q 010324 361 GSRVVTASSDCTVKVWDLKSTDCLQ-TFKPPPPLRGGDASVNSVHLF---PKNPDHIVVCNKTSSIYIMTLQ---GQ--- 430 (513)
Q Consensus 361 ~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~~~~i~i~d~~---~~--- 430 (513)
...+++|+.+|.++||+........ .+-.. ..-..+|..+..- +......++.-.-..+.+|.+. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE---~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE---TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEE---EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 3589999999999999985443110 00000 0123455555432 3333334444556677777763 11
Q ss_pred ----EEEEeecCccCCCcEEEEEECC----C-CCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEE
Q 010324 431 ----VVKSFSSGKREGGDFVAACVSP----K-GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLAT 501 (513)
Q Consensus 431 ----~~~~~~~~~~~~~~~~~~~~s~----~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 501 (513)
.+.....+.- ......+++.| . -.++++-+.||.+.+|+-+.-.....++. .--...+.|.|....|++
T Consensus 114 g~~~~L~~~yeh~l-~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 114 GNQYQLELIYEHSL-QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred CcEEEEEEEEEEec-ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence 2222222221 22334455433 2 36788889999999999776554444443 222335778888888888
Q ss_pred EECCCeEEecc
Q 010324 502 YGEDCTMKLWK 512 (513)
Q Consensus 502 ~~~dg~i~iWd 512 (513)
++.+..+.-|+
T Consensus 192 ~sss~~l~~Yk 202 (418)
T PF14727_consen 192 ASSSWTLECYK 202 (418)
T ss_pred ecCceeEEEec
Confidence 88887776553
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.13 E-value=2.2 Score=33.29 Aligned_cols=119 Identities=10% Similarity=0.202 Sum_probs=72.0
Q ss_pred eEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-----CCCEEEEEeCCCcEEEE
Q 010324 217 ECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-----DSEMLASGSQDGKIKVW 291 (513)
Q Consensus 217 ~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~~~dg~i~vw 291 (513)
..-.|......|+.++.-|+| +|.+.............. -.+..-...|++++-.+ +.+.|+.|+ ..++..|
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV-~IH~ph~~~~~~~~~~~~-i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaY 78 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKV-FIHNPHERGQRTGRQDSD-ISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAY 78 (136)
T ss_pred eEEEeCCCceeEEEEecCCEE-EEECCCccccccccccCc-eeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence 445677777889999999999 699876443221101111 11122456777776544 345777776 5589999
Q ss_pred EcCCcceeeecccccccCeEEEEEcc----CCCEEEEeeCCCcEEEEecCCCce
Q 010324 292 RIRSGQCLRRLERAHSEGVTSLVFSR----DGSQILSTSFDSTARIHGLKSGKL 341 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~ 341 (513)
|+.....+..- .-...|+++.+-. +...+++|+ +..|.-+|....+.
T Consensus 79 DV~~N~d~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 79 DVENNSDLFYK--EVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEI 129 (136)
T ss_pred EcccCchhhhh--hCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEE
Confidence 99877654332 3457788887743 233444444 66777777644333
No 456
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.13 E-value=4.6 Score=37.00 Aligned_cols=142 Identities=16% Similarity=0.271 Sum_probs=82.2
Q ss_pred cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCC----Ce-EEEEcCCCcEEEEEccCeEEEEeecCccCC----
Q 010324 372 TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP----DH-IVVCNKTSSIYIMTLQGQVVKSFSSGKREG---- 442 (513)
Q Consensus 372 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~-l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~---- 442 (513)
.|.+||+.+.+.++++..+.......+..+.+.+....+ .+ .++-...+-|.++|+.......+.......
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 578999999999999888876666677888888877432 23 334445568999999854444443322111
Q ss_pred -------------CcEEEEEECC---CCCEEEEEecCc-eEEEEECC---Cce---------eeEeeecccCCeEEEEEc
Q 010324 443 -------------GDFVAACVSP---KGEWIYCVGEDR-NLYCFSHQ---SGK---------LEHLMKVHEKDVIGVTHH 493 (513)
Q Consensus 443 -------------~~~~~~~~s~---~~~~l~~g~~dg-~i~iwd~~---~~~---------~~~~~~~h~~~v~~~~~~ 493 (513)
..+..++.+| +|+.|+.+.-.+ .++--... +.. .+..+....+....++.+
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 1244455544 566666655332 23322211 110 111221112355678889
Q ss_pred CCCCEEEEEECCCeEEeccC
Q 010324 494 PHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 494 p~~~~l~s~~~dg~i~iWdp 513 (513)
++|.++++--..+.|..|+|
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~ 214 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDP 214 (287)
T ss_dssp TTTEEEEEECCCTEEEEEET
T ss_pred CCCcEEEecCCCCeEEEEeC
Confidence 99998888888999999986
No 457
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.83 E-value=1.1 Score=42.83 Aligned_cols=136 Identities=10% Similarity=0.155 Sum_probs=84.2
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC------CCeEEEEcCCCcEEEEEcc--Ce
Q 010324 360 DGSRVV-TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN------PDHIVVCNKTSSIYIMTLQ--GQ 430 (513)
Q Consensus 360 ~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~~~~i~i~d~~--~~ 430 (513)
+.+.++ .|+....++--|+..|+.+..+.... .+ -+.+.|.. +..-++|-.+..|.-.|.+ |+
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~d-------dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN 549 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD-------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN 549 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCC-------cc-eeecCCchhHHhcCccceEEeecccceEEecccccCC
Confidence 444433 34455667777888888888776432 12 34455532 2345566666677777766 43
Q ss_pred EEEEeecCcc-CCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEEC
Q 010324 431 VVKSFSSGKR-EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE 504 (513)
Q Consensus 431 ~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 504 (513)
.+.......- ......+. ......++++++..|.|++||.-..+....+++-...|..+..+.+|.++++.+.
T Consensus 550 Ki~v~esKdY~tKn~Fss~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 550 KIKVVESKDYKTKNKFSSG-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred ceeeeeehhcccccccccc-ccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 3333322111 11112222 2334568999999999999997665556677778889999999999987766554
No 458
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=93.77 E-value=5.6 Score=36.79 Aligned_cols=238 Identities=14% Similarity=0.077 Sum_probs=113.1
Q ss_pred CCCEEEEEecCCeEEEEEecccc--ccccccccccccccccCCccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCcce--
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSG--KLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS-QDGKIKVWRIRSGQC-- 298 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~vwd~~~~~~-- 298 (513)
++++|+.|+.+|.. +-+.... +..+. .+...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly--~~~~~~~~~~~~kl----------~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~ 79 (302)
T smart00036 12 DGKWLLVGTEEGLY--VLNISDQPGTLEKL----------IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKK 79 (302)
T ss_pred CCcEEEEEeCCceE--EEEcccCCCCeEEe----------cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhh
Confidence 34689999999976 4445432 22111 1567899999999777766655 333499999843221
Q ss_pred ------------eeecccccccCeEEEEEccCC-CEEEEeeCCCcEEEEecCCC----ceeeEe---cc-cccceeEEEE
Q 010324 299 ------------LRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSG----KLLKEF---RG-HSSYVNDAIF 357 (513)
Q Consensus 299 ------------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~----~~~~~~---~~-~~~~v~~~~~ 357 (513)
.......+......++..... ..++++....+|.++..... .....+ .. ...++..+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~ 159 (302)
T smart00036 80 EALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELV 159 (302)
T ss_pred hccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeee
Confidence 000111333334444443222 23344445566666544222 111110 10 1123333333
Q ss_pred ccC--CCEEEEEeCCCcEEEEeCCC--CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEE
Q 010324 358 TND--GSRVVTASSDCTVKVWDLKS--TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVV 432 (513)
Q Consensus 358 ~~~--~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~ 432 (513)
+++ ...+..|+..+...++++.. ...... ..............++...++ ..++.+..+ ...+.|..| ...
T Consensus 160 ~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~-sl~~~~~~~~~~p~~i~~l~~--~e~Llc~~~-~~v~Vn~~G~~~~ 235 (302)
T smart00036 160 SSSFERPGICIGSDKGGGDVVQFHESLVSKEDL-SLPFLSEETSLKPISVVQVPR--DEFLLCYDE-FGVFVNLYGKRRS 235 (302)
T ss_pred cccccceEEEEEEcCCCCeEEEEeecccccccc-cccccccccccCceEEEEECC--CeEEEEECc-EEEEEeCCCCccc
Confidence 332 45677777653355555532 110000 000000011102222222332 334443333 345556665 322
Q ss_pred EEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeec
Q 010324 433 KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV 482 (513)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 482 (513)
+..... -...+.++++. ..++++-+ +..|.++++.+++.++.+..
T Consensus 236 r~~~l~--w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 236 RNPILH--WEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cceEEE--cCCcccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEEec
Confidence 211111 12234455655 35666665 45599999999998888763
No 459
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=1.9 Score=46.77 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=28.9
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccc
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLS 245 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~ 245 (513)
.|-......++|+|....+|.|+.+|.|+ ++....
T Consensus 32 ~G~~~~~~~~afD~~q~llai~t~tg~i~-~yg~~~ 66 (993)
T KOG1983|consen 32 HGFPSTPSALAFDPTQGLLAIGTRTGAIK-IYGQPG 66 (993)
T ss_pred cCCCCCCcceeeccccceEEEEEecccEE-Eecccc
Confidence 35566777899999999999999999997 876543
No 460
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=1.2 Score=42.77 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=53.4
Q ss_pred CeEEEEEccCCCEEEEeeCCCcEEEEe---------cCCCceeeEec-----------ccccceeEEEEccCC---CEEE
Q 010324 309 GVTSLVFSRDGSQILSTSFDSTARIHG---------LKSGKLLKEFR-----------GHSSYVNDAIFTNDG---SRVV 365 (513)
Q Consensus 309 ~v~~~~~~~~~~~l~~~~~dg~i~i~d---------~~~~~~~~~~~-----------~~~~~v~~~~~~~~~---~~l~ 365 (513)
.|..+..++.|..++-.+.+|.+.++= +++|+.....+ ...-.+...+|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 467788899999999999899766543 12343221111 112246678899965 5788
Q ss_pred EEeCCCcEEEEeCCCCceeEe
Q 010324 366 TASSDCTVKVWDLKSTDCLQT 386 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~ 386 (513)
.-+.|..|++||+.....+..
T Consensus 185 iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred EEecCcEEEEEecCCcchhhc
Confidence 888999999999987665543
No 461
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.64 E-value=0.5 Score=41.18 Aligned_cols=63 Identities=11% Similarity=0.244 Sum_probs=49.0
Q ss_pred ECCCCCEEEEEecCceEEEEECCCceeeEe-------ee-------cccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 450 VSPKGEWIYCVGEDRNLYCFSHQSGKLEHL-------MK-------VHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 450 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~-------~~-------~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+..++.++++.+.+|.+++||+.+++.+.. +. .....|..+..+.+|.-+++-+ +|....|++
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 456788999999999999999998875432 11 2456788999998888777766 577888875
No 462
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.51 E-value=2.1 Score=40.54 Aligned_cols=228 Identities=14% Similarity=0.128 Sum_probs=117.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcc----eeeecccccccCeEEEEEccCCC--------EEEEeeCCCcEEEEecCC----
Q 010324 275 DSEMLASGSQDGKIKVWRIRSGQ----CLRRLERAHSEGVTSLVFSRDGS--------QILSTSFDSTARIHGLKS---- 338 (513)
Q Consensus 275 ~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~--------~l~~~~~dg~i~i~d~~~---- 338 (513)
...+++.|..+|.+.+..-.-.. +-..+. -.-.-++..+.|+ ..++.+.+....++|...
T Consensus 126 gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp----~g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~ 201 (733)
T COG4590 126 GQPWFALGLSNGQVAVVQPQLSHTMPTPGREFP----PGLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQI 201 (733)
T ss_pred CCceEEEeccCCeEEEEeccccccCCCCCccCC----CCCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhh
Confidence 55688899999999988643111 111111 1111122222222 233344444444444321
Q ss_pred --------CceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCC-CCceee-EEEecCC
Q 010324 339 --------GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRG-GDASVN-SVHLFPK 408 (513)
Q Consensus 339 --------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~~~ 408 (513)
++.+..+......|..+-..|||+.+..-+. ..+.++++.+...... +......+ ....|+ +... -.
T Consensus 202 L~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~l-L~ 278 (733)
T COG4590 202 LRGDRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYL-LS 278 (733)
T ss_pred hhcccCchhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHH-Hh
Confidence 1223334444567888889999998877665 6788898875432111 11000001 001122 1111 12
Q ss_pred CCCeEEEEcCCCcEEEE-EccC---eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeeccc
Q 010324 409 NPDHIVVCNKTSSIYIM-TLQG---QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHE 484 (513)
Q Consensus 409 ~~~~l~~~~~~~~i~i~-d~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 484 (513)
+...+.+.+.||.|.-| |.+. .........+-...++..+.-..+.+-+++-+..|++..+.....+.+-.-.. -
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~ 357 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-Y 357 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-h
Confidence 34667888888888766 4431 12222222221222333333333445667777888888887655544432222 2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 485 KDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 485 ~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
..+.-+++||.+.++++-. .|.++++
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~-~gki~~~ 383 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSED-QGKIRLA 383 (733)
T ss_pred cCcceeeeCcccchheeec-CCceEEE
Confidence 3567789999999888764 4557664
No 463
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.44 E-value=0.4 Score=28.81 Aligned_cols=32 Identities=28% Similarity=0.577 Sum_probs=26.4
Q ss_pred ccEEEEEEcCC-C--CEEEEEeCCCcEEEEEcCCc
Q 010324 265 ETVLCIEFSRD-S--EMLASGSQDGKIKVWRIRSG 296 (513)
Q Consensus 265 ~~v~~l~~~~~-~--~~l~s~~~dg~i~vwd~~~~ 296 (513)
+.|.++.|+|+ + ++|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 36899999984 4 58888888899999999853
No 464
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.18 E-value=9.4 Score=37.59 Aligned_cols=274 Identities=14% Similarity=0.113 Sum_probs=133.0
Q ss_pred ccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 212 TKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
...+|..+.+...| .+.+|+.||-. .+|..+++........ ...+|..+.-+-.|+ |..|+.+| |.+.
T Consensus 163 ~d~~V~aLv~D~~g-~lWvgT~dGL~--~fd~~~gkalql~s~~-------~dk~I~al~~d~qg~-LWVGTdqG-v~~~ 230 (671)
T COG3292 163 KDTPVVALVFDANG-RLWVGTPDGLS--YFDAGRGKALQLASPP-------LDKAINALIADVQGR-LWVGTDQG-VYLQ 230 (671)
T ss_pred cCccceeeeeeccC-cEEEecCCcce--EEccccceEEEcCCCc-------chhhHHHHHHHhcCc-EEEEeccc-eEEE
Confidence 34567888888877 46778888865 6787777654332211 225566666555554 77777665 7777
Q ss_pred EcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccc--ccceeEEEEccCCCEEEEEeC
Q 010324 292 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH--SSYVNDAIFTNDGSRVVTASS 369 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~ 369 (513)
+.+..+.......-....|..+.-..+| .+-.|+.+|..+.--.+.+-.....+.| -+.|.++....+|. +-+++.
T Consensus 231 e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~ 308 (671)
T COG3292 231 EAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTY 308 (671)
T ss_pred chhhccccccCCCCcchheeeeecccCC-CEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-Eeeecc
Confidence 7655332222211123334444333334 4566666665433322222111122222 23566777777775 666777
Q ss_pred CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC-CCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEE
Q 010324 370 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN-PDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVA 447 (513)
Q Consensus 370 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~ 447 (513)
+|.+++-+-. ......+.... +. .+...+..|.. ...+-.....|.+.+-+-. +..+....... +..++.
T Consensus 309 ~giv~~~~a~-w~~ma~in~~d---G~--v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~R--g~nit~ 380 (671)
T COG3292 309 GGIVRYLTAD-WKRMAVINDSD---GG--VSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLR--GMNITT 380 (671)
T ss_pred CceEEEecch-hhheeeeecCC---Cc--hhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecc--ccccch
Confidence 7755543321 11111111110 00 01111111100 0111111111222222211 33333322211 234666
Q ss_pred EEECCCCCEEEEEecCceEEEEECCC-ceeeEeeec-ccCCeEEEEEcCCCCEEEEEECCCeEE
Q 010324 448 ACVSPKGEWIYCVGEDRNLYCFSHQS-GKLEHLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMK 509 (513)
Q Consensus 448 ~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~ 509 (513)
.++.. +..+..|+..+-+..|+..+ +.......+ ..++|..+.=.|+++ |..|+.+|.++
T Consensus 381 ~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 381 TLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred hhhcc-CCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 66766 44566777665566677665 333332222 356788888888888 66787888665
No 465
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=93.11 E-value=0.14 Score=35.93 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhcChHHHHHHHHhhcCccc
Q 010324 10 VIKIVLQFCKENSLQQTFQTLQNECQVSL 38 (513)
Q Consensus 10 ~~~li~q~L~~~G~~~t~~~L~~Esg~~~ 38 (513)
++.||..||+-+||+.|+.+|+.|||.+-
T Consensus 21 i~eLIrEyLef~~l~~TlsVf~~Es~~~~ 49 (81)
T PF09398_consen 21 INELIREYLEFNNLDYTLSVFQPESGQPE 49 (81)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHT-TT
T ss_pred HHHHHHHHHHHcCCccHHHHHhhccCCCC
Confidence 57899999999999999999999999953
No 466
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.05 E-value=0.47 Score=28.52 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=25.8
Q ss_pred cceeEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q 010324 350 SYVNDAIFTNDG---SRVVTASSDCTVKVWDLKS 380 (513)
Q Consensus 350 ~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~ 380 (513)
+.|.++.|+|++ .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999844 4888888889999999995
No 467
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.83 E-value=0.89 Score=39.61 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=48.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeec------cc-------ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC
Q 010324 272 FSRDSEMLASGSQDGKIKVWRIRSGQCLRRL------ER-------AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 338 (513)
Q Consensus 272 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 338 (513)
+..++++|++.+.+|.+++||+.+++.+..- .. .....|..+..+.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3346889999999999999999988754332 11 2456788888888887666655 57888888643
Q ss_pred C
Q 010324 339 G 339 (513)
Q Consensus 339 ~ 339 (513)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 468
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=9.4 Score=36.45 Aligned_cols=118 Identities=9% Similarity=0.197 Sum_probs=76.5
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeccc---ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC-
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER---AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS- 338 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~- 338 (513)
..++|.++.||+|.+.||+--.+.+|.+++....+....... .....|....|+.+ .-++..+..| +-+|-...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 567999999999999999999999999999854333222211 23445889999865 5566555444 44444322
Q ss_pred CceeeEecccccceeEEEEccCCCEEEEEe--CCCcEEEEeCCCCc
Q 010324 339 GKLLKEFRGHSSYVNDAIFTNDGSRVVTAS--SDCTVKVWDLKSTD 382 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~ 382 (513)
...++..+.++..|+--.|.++.+.++-++ ..+++.=+-++++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 234455566777888889999877544433 33444444444443
No 469
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.75 E-value=11 Score=37.41 Aligned_cols=149 Identities=16% Similarity=0.176 Sum_probs=75.5
Q ss_pred EEEEE---eCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccc---
Q 010324 278 MLASG---SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSY--- 351 (513)
Q Consensus 278 ~l~s~---~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--- 351 (513)
++++. ...+...+.| ..|.....+.. .......+...++|.+++... +.+..+|+ .|+.+.........
T Consensus 117 ~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~-~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~ 191 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLID-NNGDVRWYLPL-DSGSDNSFKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDF 191 (477)
T ss_dssp EEEEETT--BEEEEEEEE-TTS-EEEEE-G-GGT--SSEEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B
T ss_pred EEEeCCCCCCCceEEEEC-CCccEEEEEcc-CccccceeeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCccccc
Confidence 44444 2345666777 34555444431 111111166778898776555 88888898 57766655433321
Q ss_pred eeEEEEccCCCEEEEEeC-------------CCcEEEEeCCCCceeEeecCCCCC---C------------------CCC
Q 010324 352 VNDAIFTNDGSRVVTASS-------------DCTVKVWDLKSTDCLQTFKPPPPL---R------------------GGD 397 (513)
Q Consensus 352 v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~---~------------------~~~ 397 (513)
=.++...|+|++|+.+.. ...|..+| .+|+.+..+.....+ . ..=
T Consensus 192 HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW 270 (477)
T PF05935_consen 192 HHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDW 270 (477)
T ss_dssp -S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS
T ss_pred ccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCc
Confidence 345678899999888771 22366677 777776654322111 0 011
Q ss_pred ceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEE
Q 010324 398 ASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV 432 (513)
Q Consensus 398 ~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 432 (513)
..++++.+.+.+..+++++-.-..|...|.+...+
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEECCCCcE
Confidence 35789999997656667666677888888653333
No 470
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.64 E-value=2.7 Score=37.10 Aligned_cols=148 Identities=9% Similarity=0.120 Sum_probs=77.6
Q ss_pred EEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC-C--CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC
Q 010324 332 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-D--CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK 408 (513)
Q Consensus 332 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (513)
.+||+.+++...--......+.+-.+.+||+.+.+|+. + ..+++++.-.......+............-.+....|+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 57888777543322223334555567889999998875 2 34777775441111111111100122234445555667
Q ss_pred CCCeEEEEcCC-CcEEEEEccC--eEEEE--eecC---ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEee
Q 010324 409 NPDHIVVCNKT-SSIYIMTLQG--QVVKS--FSSG---KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM 480 (513)
Q Consensus 409 ~~~~l~~~~~~-~~i~i~d~~~--~~~~~--~~~~---~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 480 (513)
+ ..+++|+.. ....+|.... ..... +... .........+...|+|+.++.+..++. +||..+.+.+..+
T Consensus 129 G-~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n~v~~~l 205 (243)
T PF07250_consen 129 G-RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTNTVVRTL 205 (243)
T ss_pred C-CEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCCeEEeeC
Confidence 7 555555554 4455555421 11111 1110 111122335667899999988886544 5688887776665
Q ss_pred ec
Q 010324 481 KV 482 (513)
Q Consensus 481 ~~ 482 (513)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 53
No 471
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.58 E-value=10 Score=36.49 Aligned_cols=152 Identities=11% Similarity=0.069 Sum_probs=83.0
Q ss_pred eEEEEEccCCCEEEEeeCCCcEEEEecCCCce--eeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeE--
Q 010324 310 VTSLVFSRDGSQILSTSFDSTARIHGLKSGKL--LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ-- 385 (513)
Q Consensus 310 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-- 385 (513)
...+..++++.+++++..-..++-|| .|.. ...-......+.++.+.+++..++++ ..|.+. +....+..-.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 34456677877766665433333344 2322 11122234568899999998876655 556543 3333443110
Q ss_pred eecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCce
Q 010324 386 TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRN 465 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 465 (513)
.+.... .......+.++.+.++ ..+++++..|.+....-.++..........-......+.|.++++-++ .+.+|.
T Consensus 317 ~f~~~~-~~~~~~~l~~v~~~~d--~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G~ 392 (398)
T PLN00033 317 DFEEAD-IKSRGFGILDVGYRSK--KEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDGV 392 (398)
T ss_pred ceeecc-cCCCCcceEEEEEcCC--CcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCcE
Confidence 121111 0012245778888765 456666777877777655665555443233345677888877665554 445777
Q ss_pred EEEE
Q 010324 466 LYCF 469 (513)
Q Consensus 466 i~iw 469 (513)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 6554
No 472
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.52 E-value=14 Score=37.74 Aligned_cols=203 Identities=12% Similarity=0.128 Sum_probs=107.0
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEc-CCcceeeecccccccCeEEEEEccC---CCEEEEeeCCC-cEEEEecCCC-----
Q 010324 270 IEFSRDSEMLASGSQDGKIKVWRI-RSGQCLRRLERAHSEGVTSLVFSRD---GSQILSTSFDS-TARIHGLKSG----- 339 (513)
Q Consensus 270 l~~~~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg-~i~i~d~~~~----- 339 (513)
..++|+.+.+-.|=....|.-|=+ .|.+.+..+.-....-|.||..... ....++|-.++ .-++..+..+
T Consensus 33 ~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~ 112 (670)
T PF10395_consen 33 DDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTE 112 (670)
T ss_pred cccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccc
Confidence 367777776666644445555544 3667777776566677888876543 23445553443 2333332222
Q ss_pred ------c--eeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeE--eecCCCCCCCCCc-eeeEEEecC-
Q 010324 340 ------K--LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ--TFKPPPPLRGGDA-SVNSVHLFP- 407 (513)
Q Consensus 340 ------~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~-~v~~~~~~~- 407 (513)
+ ....++ -...|.++.+.++++.+++...+|.|.+||...+.... .... .+.. .+.+ .|.+
T Consensus 113 ~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~-----~~~~~v~ys-~fv~~ 185 (670)
T PF10395_consen 113 DGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKL-----KSSINVSYS-KFVND 185 (670)
T ss_pred ccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccc-----ccccceehh-hhhcc
Confidence 1 112222 35678899999999999999999999999993322111 1111 1111 1111 2222
Q ss_pred ----CCCCeEEEEcC-C---CcEEEEEc--cCeEEEEeecCccCCCcEEEEEECC-CCCEEEEEecCceEEEEECCCcee
Q 010324 408 ----KNPDHIVVCNK-T---SSIYIMTL--QGQVVKSFSSGKREGGDFVAACVSP-KGEWIYCVGEDRNLYCFSHQSGKL 476 (513)
Q Consensus 408 ----~~~~~l~~~~~-~---~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~ 476 (513)
++..++++.+. + -..+++.+ .......+..............|.- +|..... .++.|.+|++...+.
T Consensus 186 ~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~ 263 (670)
T PF10395_consen 186 FELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQI 263 (670)
T ss_pred cccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceE
Confidence 22344444333 2 24566666 3333333321111111222222322 4443333 678999999988776
Q ss_pred eEeee
Q 010324 477 EHLMK 481 (513)
Q Consensus 477 ~~~~~ 481 (513)
..++.
T Consensus 264 ~~tI~ 268 (670)
T PF10395_consen 264 QKTIS 268 (670)
T ss_pred EEEEE
Confidence 66654
No 473
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=92.51 E-value=0.41 Score=36.01 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhhcChHHHHHHHHhhcCccccccccHHHHHHHhccCChhhHHhhhccccCChhhHHHHHHHHHHHHHHcC
Q 010324 9 DVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVAQLKLPRNKLEDLYEQIVLEMIELR 88 (513)
Q Consensus 9 e~~~li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~le~l~~~ 88 (513)
|=...|..|++..| +.+.+++|-|++..+ ++ ...|++++.|... -++.......+..+|+.|+.|
T Consensus 37 E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPT---vR--------~rLd~ii~~lg~~-~~~~~~~~~~~~~IL~~L~~G 101 (113)
T PF09862_consen 37 EQLEFIKLFIKNRG---NLKEMEKELGISYPT---VR--------NRLDKIIEKLGYE-EDEEEEEEDERKEILDKLEKG 101 (113)
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHCCCcHH---HH--------HHHHHHHHHhCCC-CCcccccchhHHHHHHHHHcC
Confidence 34567789999999 889999999999975 33 1223444433331 122334456778889999999
Q ss_pred Ch--HHHHHHHH
Q 010324 89 EL--DTARAILR 98 (513)
Q Consensus 89 ~~--~~a~~~lr 98 (513)
+. ++|.+.||
T Consensus 102 eIs~eeA~~~Lk 113 (113)
T PF09862_consen 102 EISVEEALEILK 113 (113)
T ss_pred CCCHHHHHHHhC
Confidence 87 67777764
No 474
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.51 E-value=14 Score=37.73 Aligned_cols=219 Identities=15% Similarity=0.220 Sum_probs=112.0
Q ss_pred cceeeeeccccCceeEEEECCC---CCEEEEEecCCe-EEEEEeccccccc---cccccc--cccccccCCccEEEEEEc
Q 010324 203 TLSHTIKFGTKSHAECARFSPD---GQFLVSCSFDGF-IEVVWDYLSGKLK---KDLQYQ--ADETFMMHDETVLCIEFS 273 (513)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~---g~~la~g~~dg~-i~~iwd~~~~~~~---~~~~~~--~~~~~~~h~~~v~~l~~~ 273 (513)
++...+.......|.||..-.. .+..++|-.++. .+ +-.+..+... ...... ....+. -.+.|..+.|.
T Consensus 61 KLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~-ll~i~~~~~~~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~ 138 (670)
T PF10395_consen 61 KLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFK-LLLIERKVGSTEDGTVNSETTNEFELK-LDDKVVGIKFS 138 (670)
T ss_pred ceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeE-EEEEEccCccccccccCccccceEEEE-cccceEEEEEe
Confidence 3455556667777888876532 235555644443 32 3333222000 000000 000111 36789999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCcce--eeecccccccCeEEEEEcc------CCCEEEEeeC-CC---cEEEEec-CCCc
Q 010324 274 RDSEMLASGSQDGKIKVWRIRSGQC--LRRLERAHSEGVTSLVFSR------DGSQILSTSF-DS---TARIHGL-KSGK 340 (513)
Q Consensus 274 ~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~-dg---~i~i~d~-~~~~ 340 (513)
++++.+++...+|.|.+||...+.. +......+...+.--.|-+ ...++++.+. ++ ..+++.+ .+..
T Consensus 139 ~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~ 218 (670)
T PF10395_consen 139 SDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESS 218 (670)
T ss_pred cCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCc
Confidence 9999999999999999999933322 1122222222221112322 1334444443 22 4566766 1222
Q ss_pred eeeEec---ccccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE
Q 010324 341 LLKEFR---GHSSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 341 ~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 416 (513)
.+..+. .+........|.- +|...-- .++.|.+|++.+.+...++..+.-.......+.++. |-.++.++.+
T Consensus 219 ~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~--~~s~nRvLLs 294 (670)
T PF10395_consen 219 SIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK--PPSPNRVLLS 294 (670)
T ss_pred ceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee--cCCCCeEEEE
Confidence 233332 1222223333332 4543332 678999999998888888776643333222333333 3333444433
Q ss_pred cCCCcEEEEEcc
Q 010324 417 NKTSSIYIMTLQ 428 (513)
Q Consensus 417 ~~~~~i~i~d~~ 428 (513)
.++.|++.|+.
T Consensus 295 -~~nkIyLld~~ 305 (670)
T PF10395_consen 295 -VNNKIYLLDLK 305 (670)
T ss_pred -cCCEEEEEeeh
Confidence 46789999987
No 475
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.42 E-value=12 Score=36.69 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=62.0
Q ss_pred ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCC-CCCceeeEEEecCCC-----CCeEEEEc-----
Q 010324 349 SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLR-GGDASVNSVHLFPKN-----PDHIVVCN----- 417 (513)
Q Consensus 349 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-----~~~l~~~~----- 417 (513)
-.....|+|.|||+.|++--..|.|++++..++........+.... ........++++|+- ...++++.
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 3457889999999877665556999999866544222211111111 235678899999863 12344432
Q ss_pred -----CCCcEEEEEccCe------EEEEeecCc-cCCCcEEEEEECCCCCEEEEEecC
Q 010324 418 -----KTSSIYIMTLQGQ------VVKSFSSGK-REGGDFVAACVSPKGEWIYCVGED 463 (513)
Q Consensus 418 -----~~~~i~i~d~~~~------~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~d 463 (513)
....|.-+.+... ....+.... .....-..+.|.|||.+.++.++.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234544554311 111111111 111223478899999866655543
No 476
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.41 E-value=3.1 Score=40.03 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=89.0
Q ss_pred CCCEEE-EeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCC-------EEEEEeCCCcEEEEeCCCCc-eeEeec
Q 010324 318 DGSQIL-STSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS-------RVVTASSDCTVKVWDLKSTD-CLQTFK 388 (513)
Q Consensus 318 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~-~~~~~~ 388 (513)
+.+.|+ .|+....++-.|+..|+.+..+..|... -+.|.|+.+ .-++|-++..|.-.|.+-.. .+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 444444 4555667888899999999999877764 467777532 22344455556666665332 111111
Q ss_pred CCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEE
Q 010324 389 PPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYC 468 (513)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 468 (513)
...- .......+..- ....++++++..|.|++||.-|..-++.... -+..|..+..+.+|+++++.+ ...+.+
T Consensus 556 sKdY--~tKn~Fss~~t--TesGyIa~as~kGDirLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTC-k~yllL 628 (776)
T COG5167 556 SKDY--KTKNKFSSGMT--TESGYIAAASRKGDIRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATC-KNYLLL 628 (776)
T ss_pred ehhc--ccccccccccc--ccCceEEEecCCCceeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEee-cceEEE
Confidence 1100 01111222222 2237999999999999999876554444433 245688899999999998877 456666
Q ss_pred EECC
Q 010324 469 FSHQ 472 (513)
Q Consensus 469 wd~~ 472 (513)
-|+.
T Consensus 629 ~d~~ 632 (776)
T COG5167 629 TDVP 632 (776)
T ss_pred Eecc
Confidence 6653
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.33 E-value=11 Score=38.58 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=39.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEec
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 336 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 336 (513)
|-..++.+.|.-++.-++..-.|.+ ..+....+...-...|...+|+.|.+.++....+..|.+++-
T Consensus 75 hf~~~~~~~f~~~~gDii~~~~dp~-------p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 75 HFHVLTFEYFLIDEGDIIHLVNDPT-------PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred hhhhhheeeEEecCCcEEEEEcCCC-------cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 4555566665554433333333322 222222232244678899999999998888777888877763
No 478
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.26 E-value=0.072 Score=54.06 Aligned_cols=115 Identities=10% Similarity=0.109 Sum_probs=70.7
Q ss_pred CCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc---CeEEEEee--cCccCCCcEEEEEE---CCCCCEEEEEecCceEE
Q 010324 396 GDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ---GQVVKSFS--SGKREGGDFVAACV---SPKGEWIYCVGEDRNLY 467 (513)
Q Consensus 396 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~---~~~~~~~~--~~~~~~~~~~~~~~---s~~~~~l~~g~~dg~i~ 467 (513)
..+.+-.+.|-..+...+. ..-|.+.+|+++ |+....+. .....+..+.-+.| -++..++.++-.++.|+
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence 3445555555443322222 444778899886 44332222 11222333444444 34567888888899988
Q ss_pred EEECCCceeeEeeecccCCeEEEE-----------EcCCCCEEEEEECCCeEEeccC
Q 010324 468 CFSHQSGKLEHLMKVHEKDVIGVT-----------HHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 468 iwd~~~~~~~~~~~~h~~~v~~~~-----------~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+.+..+... ..+.+|...++.++ .+|||..+|.++.||.+++|.+
T Consensus 209 lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 209 LLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred EeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 887765433 45556766655443 5899999999999999999963
No 479
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.21 E-value=9.1 Score=35.05 Aligned_cols=161 Identities=13% Similarity=0.219 Sum_probs=89.6
Q ss_pred eeEEEECCCCCEEEE--Eec----------CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCC-----CE
Q 010324 216 AECARFSPDGQFLVS--CSF----------DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS-----EM 278 (513)
Q Consensus 216 v~~~~~s~~g~~la~--g~~----------dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~ 278 (513)
|..+...++|++-+. |.. .-++ ++||+.++++++.+.++.... ...+.+..+.+.... .+
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKL-v~~Dl~t~~li~~~~~p~~~~--~~~s~lndl~VD~~~~~~~~~~ 79 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKL-VAFDLKTNQLIRRYPFPPDIA--PPDSFLNDLVVDVRDGNCDDGF 79 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EE-EEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEE-EEEECCCCcEEEEEECChHHc--ccccccceEEEEccCCCCcceE
Confidence 455666666664443 211 1267 589999999888877653222 146778888887722 23
Q ss_pred EEEEe-CCCcEEEEEcCCcceeeeccc------------------ccccCeEEEEEcc---CCCEEEEeeCCCcEEEEec
Q 010324 279 LASGS-QDGKIKVWRIRSGQCLRRLER------------------AHSEGVTSLVFSR---DGSQILSTSFDSTARIHGL 336 (513)
Q Consensus 279 l~s~~-~dg~i~vwd~~~~~~~~~~~~------------------~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~ 336 (513)
+..+. ..+-|.|+|+.+++..+.... .....+..++.+| +++.|+.+.-.+. ++|.+
T Consensus 80 aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v 158 (287)
T PF03022_consen 80 AYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRV 158 (287)
T ss_dssp EEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEE
T ss_pred EEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEE
Confidence 33333 346899999998875544331 0122355556654 5556665543332 22322
Q ss_pred CC-----Cc---------eeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 010324 337 KS-----GK---------LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 380 (513)
Q Consensus 337 ~~-----~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 380 (513)
.+ .. .+..+-...+....++++++|..+++--..+.|..|+..+
T Consensus 159 ~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 159 PTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp EHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred EHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 11 10 1111111123566788899999888888999999999876
No 480
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.03 E-value=7.1 Score=33.39 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=61.4
Q ss_pred CEEEEEeCCCcEEEEEcCCc--ceeeecccccccCeEEEEEccCCCEEEEeeCCC------cEEEE---ecC--CCceee
Q 010324 277 EMLASGSQDGKIKVWRIRSG--QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS------TARIH---GLK--SGKLLK 343 (513)
Q Consensus 277 ~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~---d~~--~~~~~~ 343 (513)
+.|..+.....|.+|++... +...++. .-+.|..+.++..|+++++--.+. .+++| +.. ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 45544456778999999833 3445553 558899999999999999864322 45664 221 111111
Q ss_pred -Eecc---------------------cccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 010324 344 -EFRG---------------------HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST 381 (513)
Q Consensus 344 -~~~~---------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 381 (513)
.+-+ ...++.+++..|-..-|+.|+ ++.+.+|.+...
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 1111 134577787777433355554 456889987654
No 481
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.85 E-value=2.2 Score=41.17 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=47.0
Q ss_pred cEEEEEECCCCCEEEEEecCceEEEEE---------CCCceeeEe---ee--------cccCCeEEEEEcCCC---CEEE
Q 010324 444 DFVAACVSPKGEWIYCVGEDRNLYCFS---------HQSGKLEHL---MK--------VHEKDVIGVTHHPHR---NLLA 500 (513)
Q Consensus 444 ~~~~~~~s~~~~~l~~g~~dg~i~iwd---------~~~~~~~~~---~~--------~h~~~v~~~~~~p~~---~~l~ 500 (513)
.+..+..++.|..++-.+.+|.+.++= +++|+..-. +. ...-.+..++|||+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 456777899999999999999766543 223432211 11 112246788999965 5777
Q ss_pred EEECCCeEEecc
Q 010324 501 TYGEDCTMKLWK 512 (513)
Q Consensus 501 s~~~dg~i~iWd 512 (513)
.-+.|.+||+|+
T Consensus 185 iL~sdnviRiy~ 196 (741)
T KOG4460|consen 185 LLTSDNVIRIYS 196 (741)
T ss_pred EEecCcEEEEEe
Confidence 788899999997
No 482
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=7.4 Score=32.98 Aligned_cols=178 Identities=15% Similarity=0.179 Sum_probs=91.6
Q ss_pred EEEEccCCCEEEEeeCC--CcEEEEecCCCceeeEecccccceeEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeEeec
Q 010324 312 SLVFSRDGSQILSTSFD--STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVV-TASSDCTVKVWDLKSTDCLQTFK 388 (513)
Q Consensus 312 ~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~ 388 (513)
.+... +|.++.+.+.- ..|++||+.+|+.+.+.+-....+..=-...-|.++. -.-.+|.-..+|.++.+++..+.
T Consensus 50 GL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 50 GLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred ceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence 34443 55566665543 4799999999988765542211111111111123222 23457888899999888776665
Q ss_pred CCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC----eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc
Q 010324 389 PPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG----QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR 464 (513)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 464 (513)
... .-..++ .++ ..++.++....++.-|... ..+.....+. .-...+-+-| -+|...|-.-.+.
T Consensus 129 y~G-------eGWgLt--~d~-~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~-pv~~LNELE~-VdG~lyANVw~t~ 196 (262)
T COG3823 129 YEG-------EGWGLT--SDD-KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGV-PVSKLNELEW-VDGELYANVWQTT 196 (262)
T ss_pred cCC-------cceeee--cCC-cceEeeCCceEEEecCHHHhhhcceEEEEECCe-ecccccceee-eccEEEEeeeeec
Confidence 332 222332 233 4466666666777766541 1111111110 0011112222 1344444444455
Q ss_pred eEEEEECCCceeeEeee------------cccCCeEEEEEcCCC-CEEEEE
Q 010324 465 NLYCFSHQSGKLEHLMK------------VHEKDVIGVTHHPHR-NLLATY 502 (513)
Q Consensus 465 ~i~iwd~~~~~~~~~~~------------~h~~~v~~~~~~p~~-~~l~s~ 502 (513)
.|...|..+|+.+..+. .|.+..+.+++.|++ +++++|
T Consensus 197 ~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 197 RIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 56666666666554432 345578899999987 455555
No 483
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=2.9 Score=39.69 Aligned_cols=104 Identities=11% Similarity=0.142 Sum_probs=69.2
Q ss_pred CCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEE--eecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 396 GDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKS--FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 396 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
..++|.++.|++++ +.+++-..+..|.+++..+..... ..........+...+|+.+ .-+|..+..| +-+|....
T Consensus 65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 45699999999998 899999999999999986432221 1222223445888999876 4455555333 44454432
Q ss_pred -ceeeEeeecccCCeEEEEEcCCCCEEEEE
Q 010324 474 -GKLEHLMKVHEKDVIGVTHHPHRNLLATY 502 (513)
Q Consensus 474 -~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 502 (513)
.+.++..+.|.-.|+-..|.++.+.+.-+
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeee
Confidence 33455666788889989999987754433
No 484
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.55 E-value=3.6 Score=42.19 Aligned_cols=119 Identities=12% Similarity=0.219 Sum_probs=76.1
Q ss_pred eeEEEECC--CCCEEEEEecCCeEEEEEecccc-----cc-------ccccccccccccccCCccEEEEEEc--CCCCEE
Q 010324 216 AECARFSP--DGQFLVSCSFDGFIEVVWDYLSG-----KL-------KKDLQYQADETFMMHDETVLCIEFS--RDSEML 279 (513)
Q Consensus 216 v~~~~~s~--~g~~la~g~~dg~i~~iwd~~~~-----~~-------~~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l 279 (513)
|+.|.... +...|+.|..||.| ++|.+.+= +. .......+.-.+. -..++++++++ ...++|
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V-~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDV-LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeE-EEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 44444433 56789999999999 59975310 00 0001111111121 34689999998 788899
Q ss_pred EEEeCCCcEEEEEcCCc--ceeeecccccccCeEEEEEccCC---C---EEEEeeCCCcEEEEec
Q 010324 280 ASGSQDGKIKVWRIRSG--QCLRRLERAHSEGVTSLVFSRDG---S---QILSTSFDSTARIHGL 336 (513)
Q Consensus 280 ~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~d~ 336 (513)
|+++....|.||-.... +....-...+...|.+++|.++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99988888888866442 21111122466778999998743 2 7888899999988877
No 485
>PLN02153 epithiospecifier protein
Probab=91.50 E-value=13 Score=35.21 Aligned_cols=66 Identities=11% Similarity=0.181 Sum_probs=34.0
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCcceee--eccc---ccccCeEEEEEccCCCEEEEeeCC-----------CcEEE
Q 010324 275 DSEMLASGSQD-----GKIKVWRIRSGQCLR--RLER---AHSEGVTSLVFSRDGSQILSTSFD-----------STARI 333 (513)
Q Consensus 275 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~--~~~~---~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~i 333 (513)
++++++.|+.+ ..+.+||..+.+-.. .+.. .....-.+++. -+++..+.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 45667777653 357888887654221 1100 01111122222 356666777653 24778
Q ss_pred EecCCCce
Q 010324 334 HGLKSGKL 341 (513)
Q Consensus 334 ~d~~~~~~ 341 (513)
||..+.+-
T Consensus 164 yd~~~~~W 171 (341)
T PLN02153 164 YNIADGKW 171 (341)
T ss_pred EECCCCeE
Confidence 88876543
No 486
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=91.36 E-value=23 Score=37.85 Aligned_cols=234 Identities=13% Similarity=0.096 Sum_probs=117.7
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCcce-------eeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEec---CC-----
Q 010324 274 RDSEMLASGSQDGKIKVWRIRSGQC-------LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL---KS----- 338 (513)
Q Consensus 274 ~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~---~~----- 338 (513)
++...+++.+.+|.|+-.+..+-.. ...........+..+........++..+.+|.+..... ..
T Consensus 494 ~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~ 573 (800)
T TIGR01063 494 ARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTA 573 (800)
T ss_pred CcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCC
Confidence 4455677788888888776543211 11111112344555555556667777777887766543 22
Q ss_pred -Ccee---eEecccccceeEEEEc--cCCCEEEEEeCCCcEEEEeCCCCceeEeecC-CCCCCCCCceeeEEEecCCCCC
Q 010324 339 -GKLL---KEFRGHSSYVNDAIFT--NDGSRVVTASSDCTVKVWDLKSTDCLQTFKP-PPPLRGGDASVNSVHLFPKNPD 411 (513)
Q Consensus 339 -~~~~---~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ 411 (513)
|..+ ..+.....-+..+... .++..++..+.+|.++-.++........... ...+.. +..+..+...... .
T Consensus 574 ~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~-d 651 (800)
T TIGR01063 574 KGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGD-D 651 (800)
T ss_pred CCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCC-C
Confidence 1222 1222222334444432 3456899999999999887764332111000 001112 2334444333333 5
Q ss_pred eEEEEcCCCcEEEEEccC--------eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC-------cee
Q 010324 412 HIVVCNKTSSIYIMTLQG--------QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS-------GKL 476 (513)
Q Consensus 412 ~l~~~~~~~~i~i~d~~~--------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-------~~~ 476 (513)
.++..+..|.+..+.... .....+. ...+..+.++..-.++..++..+..|.++...+.. ++-
T Consensus 652 ~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~--L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kG 729 (800)
T TIGR01063 652 EVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIK--LKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKG 729 (800)
T ss_pred EEEEEECCCcEEEEEhhhcCCcCCCCCCeeccc--CCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcc
Confidence 577777778777666531 1111111 11233455555444556788888889887776432 222
Q ss_pred eEee--ecccCCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 477 EHLM--KVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 477 ~~~~--~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
+..+ ....+.+..+....+...++..+.+|.+..+
T Consensus 730 v~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf 766 (800)
T TIGR01063 730 VKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRT 766 (800)
T ss_pred eEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEe
Confidence 2222 2222344444443444445556667765443
No 487
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.21 E-value=13 Score=34.80 Aligned_cols=106 Identities=9% Similarity=0.125 Sum_probs=53.4
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCcce---eeeccc-ccccCeEEEEEccCCCEEEEeeCC-----CcEEEEecCCCc
Q 010324 275 DSEMLASGSQD-----GKIKVWRIRSGQC---LRRLER-AHSEGVTSLVFSRDGSQILSTSFD-----STARIHGLKSGK 340 (513)
Q Consensus 275 ~~~~l~s~~~d-----g~i~vwd~~~~~~---~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 340 (513)
++..++.|+.+ ..+..+|+.+.+. ...+.. .....-.+++.. ++...+.|+.. ..+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45666777654 3566777766543 112210 111111122222 56666676642 368888987665
Q ss_pred eeeE--ecccccceeEEEEccCCCEEEEEeCCCc----EEEEeCCCCc
Q 010324 341 LLKE--FRGHSSYVNDAIFTNDGSRVVTASSDCT----VKVWDLKSTD 382 (513)
Q Consensus 341 ~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~iwd~~~~~ 382 (513)
-... +.. .......+...+++..+.|+.++. +.+||+.+.+
T Consensus 151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 3321 111 112222233345677777776543 5678887654
No 488
>PLN02153 epithiospecifier protein
Probab=91.19 E-value=14 Score=35.00 Aligned_cols=106 Identities=8% Similarity=0.057 Sum_probs=51.5
Q ss_pred CCCEEEEEeCC-------CcEEEEEcCCcceeeecccc--ccc---CeEEEEEccCCCEEEEeeCC-----CcEEEEecC
Q 010324 275 DSEMLASGSQD-------GKIKVWRIRSGQCLRRLERA--HSE---GVTSLVFSRDGSQILSTSFD-----STARIHGLK 337 (513)
Q Consensus 275 ~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~ 337 (513)
++...+.|+.+ ..+.+||+.+.+-....... ... ....+++ ++..++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 34566666542 35778888765432211100 010 1222222 56677777754 357888987
Q ss_pred CCceee--Eecc---cccceeEEEEccCCCEEEEEeCC-----------CcEEEEeCCCCc
Q 010324 338 SGKLLK--EFRG---HSSYVNDAIFTNDGSRVVTASSD-----------CTVKVWDLKSTD 382 (513)
Q Consensus 338 ~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~ 382 (513)
+.+-.. .+.. ........+..-+++.++.|+.+ ..+.+||..+.+
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 654322 1110 11111112223355666776643 247788887653
No 489
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.18 E-value=1.4 Score=26.32 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=29.0
Q ss_pred CCCCEEEEEe-cCceEEEEECCCceeeEeeecccCCeEEEEE
Q 010324 452 PKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTH 492 (513)
Q Consensus 452 ~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 492 (513)
|++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5777777766 6889999999999888877663 33344544
No 490
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.86 E-value=6.5 Score=30.73 Aligned_cols=122 Identities=7% Similarity=0.049 Sum_probs=63.9
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCceeEe-ecCCCCCCCCCceeeEEEecC---C-CCCeEEEEcCCCcEEEEEccC
Q 010324 355 AIFTNDGSRVVTASSDCTVKVWDLKSTDCLQT-FKPPPPLRGGDASVNSVHLFP---K-NPDHIVVCNKTSSIYIMTLQG 429 (513)
Q Consensus 355 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~---~-~~~~l~~~~~~~~i~i~d~~~ 429 (513)
-.|......|++++.-|+|.|++......... .............|++++..+ . ..+.|+.| ....+..||...
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEccc
Confidence 35666666788899999999998764321111 011111112344666665444 2 23445555 456788899874
Q ss_pred eEEEEeecCccCCCcEEEEEE---CCCCCEEEEEecCceEEEEECCCceeeEee
Q 010324 430 QVVKSFSSGKREGGDFVAACV---SPKGEWIYCVGEDRNLYCFSHQSGKLEHLM 480 (513)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~---s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 480 (513)
+.-.-+.... ..+.++.+ .....-++..+.+..|.-||..-.+...+.
T Consensus 83 N~d~Fyke~~---DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 83 NSDLFYKEVP---DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred CchhhhhhCc---cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 4322222211 23444444 332233444444677777776655554443
No 491
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=26 Score=37.24 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=46.3
Q ss_pred EECCCCCEEEEEecCCeEEEEEecccccccccccc-----ccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010324 220 RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQY-----QADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR 294 (513)
Q Consensus 220 ~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~ 294 (513)
++..-|+.+..|+.+|.+. +|.+........... .....+ +..+|.-+...+.-..+.+- .|+.|.++++.
T Consensus 21 ~va~~~~~l~vGt~~G~L~-lY~i~~~~~~~~~~~~~~~~~~~~~~--~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~ 96 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLY-LYSIYERGNPESVELVTETVKFEKEF--SKKPINKLLVCASLELLLIL-SDSQIAVHKLP 96 (877)
T ss_pred HHHHhCCEEEEEcCCCcEE-EEeccccccccchhhhcchhHHhhhh--ccchhHHHhhcchhcchhee-cCCcceeeecC
Confidence 3444688999999999995 998875432211111 000111 35677777777755555544 47788888887
Q ss_pred Ccce
Q 010324 295 SGQC 298 (513)
Q Consensus 295 ~~~~ 298 (513)
+-+.
T Consensus 97 ~~~~ 100 (877)
T KOG2063|consen 97 ELEP 100 (877)
T ss_pred cccc
Confidence 6555
No 492
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.27 E-value=1.9 Score=36.05 Aligned_cols=28 Identities=25% Similarity=0.467 Sum_probs=24.1
Q ss_pred CeEEEEEcCCC------CEEEEEECCCeEEeccC
Q 010324 486 DVIGVTHHPHR------NLLATYGEDCTMKLWKP 513 (513)
Q Consensus 486 ~v~~~~~~p~~------~~l~s~~~dg~i~iWdp 513 (513)
.|.+++|||.| .+||+.+.+|.|.||.+
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 68899999943 58999999999999975
No 493
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.81 E-value=12 Score=32.09 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=62.2
Q ss_pred CEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC---C---cEEEE---EcC--
Q 010324 226 QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD---G---KIKVW---RIR-- 294 (513)
Q Consensus 226 ~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g---~i~vw---d~~-- 294 (513)
+.|..+...+.|. +|++..........+ . .-+.|..+.++..|++|+|--.+ . .+|+| +..
T Consensus 29 d~Lfva~~g~~Ve-v~~l~~~~~~~~~~F------~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 29 DALFVAASGCKVE-VYDLEQEECPLLCTF------S-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred ceEEEEcCCCEEE-EEEcccCCCceeEEE------c-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 4555556677895 999984332222211 1 34789999999999999986332 2 56665 221
Q ss_pred Ccceee---------------------ecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC
Q 010324 295 SGQCLR---------------------RLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG 339 (513)
Q Consensus 295 ~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 339 (513)
..+.+. .++.+-..++.+++..|-...|++|+ ++.+.+|.+...
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 111111 11112344677888888555566666 577888877543
No 494
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.63 E-value=20 Score=34.43 Aligned_cols=223 Identities=12% Similarity=0.048 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEcC--CcceeeecccccccCeEEEEEccCCCEEEEeeCCC-----------cEEEEecCCCceeeE
Q 010324 278 MLASGSQDGKIKVWRIR--SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS-----------TARIHGLKSGKLLKE 344 (513)
Q Consensus 278 ~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~ 344 (513)
+++.|..+..+.++|+. +++....-..............-++...+.|+.+. .+..||..+.+-...
T Consensus 42 yv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~ 121 (376)
T PRK14131 42 YVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKL 121 (376)
T ss_pred EEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeC
Q ss_pred ec-ccccceeEEEEc-cCCCEEEEEeCC---------------------------------------CcEEEEeCCCCce
Q 010324 345 FR-GHSSYVNDAIFT-NDGSRVVTASSD---------------------------------------CTVKVWDLKSTDC 383 (513)
Q Consensus 345 ~~-~~~~~v~~~~~~-~~~~~l~~~~~d---------------------------------------g~i~iwd~~~~~~ 383 (513)
-. .....-...+.. -+++..+.|+.+ ..+.+||..+.+-
T Consensus 122 ~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W 201 (376)
T PRK14131 122 DTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQW 201 (376)
T ss_pred CCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCee
Q ss_pred eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc------CCCcEEEEEccCeEEEEeecCcc--------CCCcEEEEE
Q 010324 384 LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN------KTSSIYIMTLQGQVVKSFSSGKR--------EGGDFVAAC 449 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~~~~i~i~d~~~~~~~~~~~~~~--------~~~~~~~~~ 449 (513)
...-. .........+....+..+++.|+ ....++.++++.....-...... +.......+
T Consensus 202 ~~~~~------~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a 275 (376)
T PRK14131 202 KNAGE------SPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFA 275 (376)
T ss_pred eECCc------CCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEec
Q ss_pred ECCCCCEEEEEecC----------------------ceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCC
Q 010324 450 VSPKGEWIYCVGED----------------------RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDC 506 (513)
Q Consensus 450 ~s~~~~~l~~g~~d----------------------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 506 (513)
...++++.+.|+.+ ..+.+||..+.+-...-.-+...-...+..-++.+++.||...
T Consensus 276 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~~ 354 (376)
T PRK14131 276 GYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGETA 354 (376)
T ss_pred eeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCCC
No 495
>PLN02193 nitrile-specifier protein
Probab=89.59 E-value=24 Score=35.19 Aligned_cols=198 Identities=7% Similarity=0.010 Sum_probs=90.8
Q ss_pred CCCEEEEEeCC-------CcEEEEEcCCcceeeecccc-ccc--CeEEEEEccCCCEEEEeeCC-----CcEEEEecCCC
Q 010324 275 DSEMLASGSQD-------GKIKVWRIRSGQCLRRLERA-HSE--GVTSLVFSRDGSQILSTSFD-----STARIHGLKSG 339 (513)
Q Consensus 275 ~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~-~~~--~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 339 (513)
++..++.|+.+ ..+.+||+.+.+-...-..+ ... .....+..-++...+.|+.+ ..+..||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 34556666643 24778888765432111000 011 11111122255666777655 35888898766
Q ss_pred ceeeEecc---cccceeEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCC
Q 010324 340 KLLKEFRG---HSSYVNDAIFTNDGSRVVTASSDC-----TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 411 (513)
Q Consensus 340 ~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (513)
+-...-.. ....-...+..-+++.++.|+.++ .+..||+.+.+-.. ...+......... ..+... .+ .
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~-~~~~~~-~g-k 330 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGG-AGLEVV-QG-K 330 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCC-cEEEEE-CC-c
Confidence 43321111 111111111223456666666543 36778877654221 1111100000111 112222 22 5
Q ss_pred eEEEEcCC----CcEEEEEccCeEEEEeecC-ccCCCcEEEEEECCCCCEEEEEecC--------------ceEEEEECC
Q 010324 412 HIVVCNKT----SSIYIMTLQGQVVKSFSSG-KREGGDFVAACVSPKGEWIYCVGED--------------RNLYCFSHQ 472 (513)
Q Consensus 412 ~l~~~~~~----~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~d--------------g~i~iwd~~ 472 (513)
+++.++.+ ..+.+||+.......+... ..........+..-+++.++.|+.. +.+++||..
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 66666544 4688999886655544322 1011111122223356677777743 248889988
Q ss_pred Ccee
Q 010324 473 SGKL 476 (513)
Q Consensus 473 ~~~~ 476 (513)
+.+-
T Consensus 411 t~~W 414 (470)
T PLN02193 411 TLQW 414 (470)
T ss_pred cCEE
Confidence 7653
No 496
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.53 E-value=22 Score=34.81 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=62.5
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccc-cCCccEEEEEEcCCC------CEEEEEe
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFM-MHDETVLCIEFSRDS------EMLASGS 283 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~------~~l~s~~ 283 (513)
..-...+.|+|.|||++|++--..|.|+ +++..++......... .... ........|+++|+- .+|....
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~-~v~~~~~~~~~~~~l~--~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKIL-RVNPETGEVKVVFTLP--EIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEE-EEeCCCCceeeeecCC--ceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence 4456778999999998888776679996 7765544321111111 1111 136778999999874 2344332
Q ss_pred ----------CCCcEEEEEcCCc-------cee-eecccccccCeEEEEEccCCCEEEEeeCC
Q 010324 284 ----------QDGKIKVWRIRSG-------QCL-RRLERAHSEGVTSLVFSRDGSQILSTSFD 328 (513)
Q Consensus 284 ----------~dg~i~vwd~~~~-------~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 328 (513)
....|.-|.+... +.+ ..+.......-..|+|.|||.+.++.+..
T Consensus 104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 104 TYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred eccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444544321 111 11110111234568899999866655433
No 497
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.44 E-value=19 Score=33.77 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=62.6
Q ss_pred CCCEEEEeeCC-----CcEEEEecCCCcee---eEecccccce--eEEEEccCCCEEEEEeC-----CCcEEEEeCCCCc
Q 010324 318 DGSQILSTSFD-----STARIHGLKSGKLL---KEFRGHSSYV--NDAIFTNDGSRVVTASS-----DCTVKVWDLKSTD 382 (513)
Q Consensus 318 ~~~~l~~~~~d-----g~i~i~d~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~ 382 (513)
++..++.|+.+ ..+..+|+.+.+.. ..+.....+. .+++. -+++..+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55666777654 35677777665531 2222111111 12222 24566666664 2357888887654
Q ss_pred eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC----cEEEEEccCeEEEEeecCccCCCcE----EEEEECCCC
Q 010324 383 CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS----SIYIMTLQGQVVKSFSSGKREGGDF----VAACVSPKG 454 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~s~~~ 454 (513)
-.. +.... ... .....+... +..+++.|+.++ .+..||........+........+. ...+...++
T Consensus 151 W~~-~~~~p---~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~ 224 (323)
T TIGR03548 151 WFE-LPDFP---GEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINES 224 (323)
T ss_pred eeE-CCCCC---CCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCC
Confidence 221 11100 000 111111111 226667666553 3567887755544443211000011 111223456
Q ss_pred CEEEEEecC
Q 010324 455 EWIYCVGED 463 (513)
Q Consensus 455 ~~l~~g~~d 463 (513)
+.++.|+.+
T Consensus 225 ~iyv~GG~~ 233 (323)
T TIGR03548 225 LLLCIGGFN 233 (323)
T ss_pred EEEEECCcC
Confidence 777777765
No 498
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.41 E-value=32 Score=36.61 Aligned_cols=67 Identities=13% Similarity=-0.006 Sum_probs=49.3
Q ss_pred CcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEee----ec---------------ccCCeEEEEEcCCCCEEEEEE
Q 010324 443 GDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM----KV---------------HEKDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 443 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~~---------------h~~~v~~~~~~p~~~~l~s~~ 503 (513)
..|.+++...-+.+++..-.||+|.++|..+-+.+... .. +-.++..++|||.+..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45667777777889999999999999998876544333 00 011344588999999999999
Q ss_pred CCCeEE
Q 010324 504 EDCTMK 509 (513)
Q Consensus 504 ~dg~i~ 509 (513)
.||.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 888854
No 499
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.34 E-value=2.9 Score=34.91 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=25.2
Q ss_pred cceeEEEEccCC------CEEEEEeCCCcEEEEeCCC
Q 010324 350 SYVNDAIFTNDG------SRVVTASSDCTVKVWDLKS 380 (513)
Q Consensus 350 ~~v~~~~~~~~~------~~l~~~~~dg~i~iwd~~~ 380 (513)
..+.+++|||.| -.|++.+.+|.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999954 3788889999999998653
No 500
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=89.34 E-value=18 Score=33.41 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=51.0
Q ss_pred CeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccccc-c----eeEEEEccCCCEEEEEeCCCcEEEEeC
Q 010324 309 GVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS-Y----VNDAIFTNDGSRVVTASSDCTVKVWDL 378 (513)
Q Consensus 309 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~----v~~~~~~~~~~~l~~~~~dg~i~iwd~ 378 (513)
.++++...++|++|+++-.-..|.+.|.++|+.+..+.+... . -...++-.+-+++-.+..++.|.++|=
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 477888888999999998889999999999999998876522 1 111334334444445567888999986
Done!