Query 010324
Match_columns 513
No_of_seqs 959 out of 3629
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 04:20:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.1E-55 3.9E-60 428.8 42.5 284 211-513 106-409 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 1.2E-47 4.2E-52 363.1 44.4 290 203-512 46-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 3.5E-47 1.2E-51 356.3 40.5 286 210-513 29-319 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 1E-46 3.4E-51 358.5 43.0 292 203-512 55-354 (354)
5 2ynn_A Coatomer subunit beta'; 100.0 5E-45 1.7E-49 339.5 41.7 289 204-512 5-299 (304)
6 4g56_B MGC81050 protein; prote 100.0 8.7E-46 3E-50 352.2 36.8 290 210-513 39-341 (357)
7 4ery_A WD repeat-containing pr 100.0 1.2E-44 4.3E-49 338.5 43.6 292 205-513 16-310 (312)
8 4gqb_B Methylosome protein 50; 100.0 2.6E-45 8.9E-50 346.1 37.0 291 211-512 28-328 (344)
9 3iz6_a 40S ribosomal protein R 100.0 1.5E-45 5E-50 354.3 33.0 293 203-513 57-373 (380)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.2E-44 7.4E-49 341.4 40.0 293 204-513 7-333 (345)
11 3frx_A Guanine nucleotide-bind 100.0 1.5E-43 5.1E-48 331.8 42.5 289 206-513 11-315 (319)
12 1erj_A Transcriptional repress 100.0 1.8E-43 6.3E-48 341.2 39.6 298 211-513 62-387 (393)
13 2hes_X YDR267CP; beta-propelle 100.0 4.8E-43 1.6E-47 330.0 40.7 292 204-513 6-326 (330)
14 1nr0_A Actin interacting prote 100.0 3.4E-43 1.2E-47 358.8 42.2 300 202-513 137-565 (611)
15 2xzm_R RACK1; ribosome, transl 100.0 7.7E-43 2.6E-47 330.7 40.6 290 205-512 14-337 (343)
16 1nr0_A Actin interacting prote 100.0 4.8E-42 1.6E-46 350.4 41.9 307 193-513 40-353 (611)
17 2ymu_A WD-40 repeat protein; u 100.0 1.3E-41 4.4E-46 346.0 42.2 285 202-512 293-577 (577)
18 1gxr_A ESG1, transducin-like e 100.0 1.1E-40 3.9E-45 315.0 42.9 285 210-512 48-334 (337)
19 2ynn_A Coatomer subunit beta'; 100.0 9.9E-42 3.4E-46 317.2 34.3 248 257-513 6-257 (304)
20 3zwl_B Eukaryotic translation 100.0 1.3E-40 4.3E-45 318.8 42.1 281 211-513 30-344 (369)
21 4aow_A Guanine nucleotide-bind 100.0 3.4E-40 1.1E-44 312.3 43.0 292 204-513 30-335 (340)
22 3dm0_A Maltose-binding peripla 100.0 3E-40 1E-44 342.6 42.0 289 207-513 377-691 (694)
23 3k26_A Polycomb protein EED; W 100.0 3E-41 1E-45 322.8 30.4 301 205-513 10-364 (366)
24 1sq9_A Antiviral protein SKI8; 100.0 3.3E-40 1.1E-44 319.5 36.2 293 210-513 13-393 (397)
25 2ymu_A WD-40 repeat protein; u 100.0 1.9E-39 6.5E-44 330.0 43.6 285 203-513 253-537 (577)
26 3ei3_B DNA damage-binding prot 100.0 2.7E-40 9.4E-45 318.4 35.1 289 204-513 65-380 (383)
27 1vyh_C Platelet-activating fac 100.0 6.6E-40 2.3E-44 318.0 36.7 244 259-513 103-367 (410)
28 3i2n_A WD repeat-containing pr 100.0 2.5E-40 8.4E-45 315.4 32.9 294 204-513 9-351 (357)
29 2pm9_A Protein WEB1, protein t 100.0 5.3E-41 1.8E-45 327.1 28.6 293 211-513 10-335 (416)
30 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-39 6E-44 311.4 37.6 284 211-512 6-358 (372)
31 3gre_A Serine/threonine-protei 100.0 1E-39 3.5E-44 320.2 35.9 302 201-512 51-437 (437)
32 1r5m_A SIR4-interacting protei 100.0 2.7E-39 9.2E-44 315.7 36.5 279 212-513 107-423 (425)
33 4h5i_A Guanine nucleotide-exch 100.0 6E-40 2.1E-44 312.8 30.7 290 213-512 14-340 (365)
34 4gqb_B Methylosome protein 50; 100.0 4E-39 1.4E-43 303.9 35.7 251 210-476 79-334 (344)
35 4e54_B DNA damage-binding prot 100.0 7.2E-40 2.4E-44 320.7 31.2 290 211-513 117-428 (435)
36 4aez_A CDC20, WD repeat-contai 100.0 8.4E-39 2.9E-43 309.8 37.9 280 211-513 89-378 (401)
37 3odt_A Protein DOA1; ubiquitin 100.0 2E-38 6.8E-43 296.4 38.9 281 203-513 9-294 (313)
38 3ow8_A WD repeat-containing pr 100.0 7.6E-39 2.6E-43 299.7 35.6 267 185-472 51-320 (321)
39 4gga_A P55CDC, cell division c 100.0 4.2E-38 1.4E-42 306.8 41.8 281 215-513 107-393 (420)
40 2pm9_A Protein WEB1, protein t 100.0 1E-39 3.6E-44 318.0 29.6 310 191-513 44-412 (416)
41 4ggc_A P55CDC, cell division c 100.0 5.3E-38 1.8E-42 294.3 39.6 281 216-513 28-313 (318)
42 1r5m_A SIR4-interacting protei 100.0 1.2E-38 4.1E-43 311.1 36.3 288 211-513 43-359 (425)
43 1got_B GT-beta; complex (GTP-b 100.0 3.5E-38 1.2E-42 298.2 36.6 268 187-470 72-340 (340)
44 3vl1_A 26S proteasome regulato 100.0 6.5E-39 2.2E-43 312.8 31.9 302 192-513 78-417 (420)
45 4a11_B DNA excision repair pro 100.0 6.4E-38 2.2E-42 304.3 38.5 299 211-513 41-363 (408)
46 3dwl_C Actin-related protein 2 100.0 7.7E-40 2.6E-44 314.6 24.6 292 211-513 9-377 (377)
47 3vl1_A 26S proteasome regulato 100.0 1.7E-38 5.8E-43 309.9 34.4 280 215-512 58-362 (420)
48 1gxr_A ESG1, transducin-like e 100.0 4.5E-38 1.5E-42 297.2 34.4 281 211-513 7-294 (337)
49 2pbi_B Guanine nucleotide-bind 100.0 3.4E-37 1.2E-41 292.8 37.5 273 185-470 79-354 (354)
50 1pgu_A Actin interacting prote 100.0 7.1E-37 2.4E-41 313.4 42.6 315 193-513 40-570 (615)
51 4g56_B MGC81050 protein; prote 100.0 2.2E-38 7.5E-43 301.2 29.0 276 217-513 9-299 (357)
52 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.3E-37 4.4E-42 294.8 33.9 251 258-512 9-280 (345)
53 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-37 6.2E-42 342.9 40.2 289 210-512 612-910 (1249)
54 2pm7_B Protein transport prote 100.0 2.4E-37 8.3E-42 286.6 34.7 249 210-472 6-284 (297)
55 2j04_B YDR362CP, TAU91; beta p 100.0 3.6E-39 1.2E-43 319.2 23.8 306 194-513 185-515 (524)
56 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-37 5.5E-42 328.9 38.1 287 205-512 6-299 (814)
57 3frx_A Guanine nucleotide-bind 100.0 4.6E-37 1.6E-41 287.7 36.3 249 205-474 58-318 (319)
58 2pm7_B Protein transport prote 100.0 3.4E-37 1.2E-41 285.6 34.4 248 259-513 4-283 (297)
59 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.4E-36 4.7E-41 298.6 40.0 295 188-512 135-439 (445)
60 1yfq_A Cell cycle arrest prote 100.0 9.1E-38 3.1E-42 295.9 30.0 280 209-507 7-315 (342)
61 3dw8_B Serine/threonine-protei 100.0 1.8E-37 6.1E-42 305.2 33.1 297 210-512 25-443 (447)
62 4ery_A WD repeat-containing pr 100.0 7.9E-37 2.7E-41 285.5 35.2 247 257-513 16-266 (312)
63 3sfz_A APAF-1, apoptotic pepti 100.0 4.1E-37 1.4E-41 340.1 37.2 304 192-513 637-1032(1249)
64 3iz6_a 40S ribosomal protein R 100.0 2.3E-37 7.9E-42 297.2 30.4 287 185-475 81-377 (380)
65 3bg1_A Protein SEC13 homolog; 100.0 1.9E-37 6.6E-42 289.8 29.0 251 259-513 8-291 (316)
66 3mmy_A MRNA export factor; mRN 100.0 5.2E-37 1.8E-41 293.5 32.1 297 198-512 25-343 (368)
67 3f3f_A Nucleoporin SEH1; struc 100.0 6.4E-37 2.2E-41 290.5 32.1 295 207-513 5-335 (351)
68 2hes_X YDR267CP; beta-propelle 100.0 3.3E-36 1.1E-40 283.3 35.0 245 258-512 8-277 (330)
69 3v7d_B Cell division control p 100.0 5.4E-36 1.8E-40 296.1 38.0 295 188-511 138-459 (464)
70 1erj_A Transcriptional repress 100.0 3E-36 1E-40 290.8 35.1 243 262-513 62-339 (393)
71 3v7d_B Cell division control p 100.0 1.5E-35 5E-40 293.0 40.2 278 206-513 115-419 (464)
72 2xzm_R RACK1; ribosome, transl 100.0 1.2E-35 4.1E-40 281.2 37.7 248 256-513 13-283 (343)
73 1p22_A F-BOX/WD-repeat protein 100.0 3.9E-36 1.3E-40 294.3 34.8 269 211-513 131-412 (435)
74 3bg1_A Protein SEC13 homolog; 100.0 2.7E-37 9.1E-42 288.9 25.1 250 206-472 6-292 (316)
75 2oaj_A Protein SNI1; WD40 repe 100.0 9.9E-37 3.4E-41 322.2 30.5 322 185-513 72-603 (902)
76 2oaj_A Protein SNI1; WD40 repe 100.0 3.7E-36 1.3E-40 317.9 33.9 210 208-432 12-246 (902)
77 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.6E-35 2.6E-39 286.2 39.2 273 206-513 112-389 (445)
78 1pgu_A Actin interacting prote 100.0 3.6E-35 1.2E-39 300.8 37.6 286 211-513 16-326 (615)
79 2aq5_A Coronin-1A; WD40 repeat 100.0 3.6E-36 1.2E-40 291.5 28.1 282 215-512 36-339 (402)
80 3jrp_A Fusion protein of prote 100.0 5.1E-35 1.7E-39 280.9 32.8 250 258-512 5-284 (379)
81 3jrp_A Fusion protein of prote 100.0 6.1E-35 2.1E-39 280.4 33.3 258 206-474 5-288 (379)
82 4aez_A CDC20, WD repeat-contai 100.0 1E-34 3.5E-39 281.1 34.6 271 190-480 111-387 (401)
83 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.2E-34 7.7E-39 283.1 35.8 289 213-512 4-388 (450)
84 2j04_B YDR362CP, TAU91; beta p 100.0 5.6E-36 1.9E-40 296.3 22.3 262 211-513 131-426 (524)
85 3mkq_A Coatomer beta'-subunit; 100.0 3E-34 1E-38 303.7 36.2 299 191-512 34-383 (814)
86 3dwl_C Actin-related protein 2 100.0 8.4E-36 2.9E-40 286.4 21.7 241 263-512 10-278 (377)
87 3dm0_A Maltose-binding peripla 100.0 7.3E-34 2.5E-38 294.7 37.1 267 187-472 400-692 (694)
88 2j04_A TAU60, YPL007P, hypothe 100.0 2.1E-35 7.1E-40 284.6 23.1 264 211-512 13-294 (588)
89 4aow_A Guanine nucleotide-bind 100.0 2.6E-33 8.8E-38 265.0 36.3 271 186-475 55-339 (340)
90 1k8k_C P40, ARP2/3 complex 41 100.0 6.2E-34 2.1E-38 272.7 30.9 241 262-513 6-272 (372)
91 1sq9_A Antiviral protein SKI8; 100.0 8.2E-34 2.8E-38 274.5 31.7 251 258-513 10-320 (397)
92 3k26_A Polycomb protein EED; W 100.0 4.8E-34 1.7E-38 272.7 28.8 264 192-473 44-366 (366)
93 2xyi_A Probable histone-bindin 100.0 9.9E-34 3.4E-38 276.6 31.5 244 260-513 124-408 (430)
94 3zwl_B Eukaryotic translation 100.0 4.7E-33 1.6E-37 266.1 33.2 269 189-480 51-353 (369)
95 3bws_A Protein LP49; two-domai 100.0 1.9E-32 6.3E-37 268.2 37.4 284 212-513 121-430 (433)
96 3i2n_A WD repeat-containing pr 100.0 2E-33 6.9E-38 267.5 29.2 248 259-512 13-288 (357)
97 4a11_B DNA excision repair pro 100.0 9.6E-33 3.3E-37 267.8 33.9 283 211-512 97-402 (408)
98 3ei3_B DNA damage-binding prot 100.0 5E-33 1.7E-37 267.7 31.4 273 186-473 90-382 (383)
99 4e54_B DNA damage-binding prot 100.0 1E-33 3.4E-38 277.1 26.9 280 185-477 135-434 (435)
100 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-32 4.5E-37 256.9 33.3 241 256-513 10-253 (313)
101 3jro_A Fusion protein of prote 100.0 1.3E-33 4.6E-38 294.4 29.1 250 259-513 4-283 (753)
102 1yfq_A Cell cycle arrest prote 100.0 2.1E-33 7.1E-38 265.9 26.7 238 261-513 8-280 (342)
103 2aq5_A Coronin-1A; WD40 repeat 100.0 2.6E-33 9E-38 271.4 28.0 256 211-476 79-345 (402)
104 3lrv_A PRE-mRNA-splicing facto 100.0 1E-33 3.6E-38 267.9 24.1 267 220-511 43-329 (343)
105 4gga_A P55CDC, cell division c 100.0 2.3E-32 7.8E-37 266.2 34.2 274 192-487 125-409 (420)
106 3gre_A Serine/threonine-protei 100.0 1.2E-33 4.2E-38 277.0 25.2 270 220-513 34-357 (437)
107 3dw8_B Serine/threonine-protei 100.0 3.8E-33 1.3E-37 274.3 28.5 248 263-513 27-371 (447)
108 3vu4_A KMHSV2; beta-propeller 100.0 1.8E-32 6.3E-37 260.3 32.0 278 211-512 17-333 (355)
109 2xyi_A Probable histone-bindin 100.0 2.1E-32 7.3E-37 267.1 31.6 260 207-474 122-411 (430)
110 3jro_A Fusion protein of prote 100.0 3.9E-33 1.3E-37 290.9 26.2 254 210-473 6-285 (753)
111 4gq1_A NUP37; propeller, trans 100.0 5.8E-33 2E-37 267.6 23.7 237 270-507 95-382 (393)
112 1l0q_A Surface layer protein; 100.0 9.4E-31 3.2E-35 252.5 37.0 263 226-513 3-273 (391)
113 2j04_A TAU60, YPL007P, hypothe 100.0 5.5E-32 1.9E-36 260.9 28.0 260 207-504 47-350 (588)
114 3mmy_A MRNA export factor; mRN 100.0 1.7E-31 5.7E-36 255.2 31.4 245 258-513 33-302 (368)
115 1p22_A F-BOX/WD-repeat protein 100.0 5E-31 1.7E-35 258.0 30.7 272 188-493 149-433 (435)
116 1l0q_A Surface layer protein; 100.0 1.1E-29 3.7E-34 245.1 38.5 296 191-513 11-340 (391)
117 4h5i_A Guanine nucleotide-exch 100.0 3E-31 1E-35 252.7 26.1 253 211-474 71-344 (365)
118 4ggc_A P55CDC, cell division c 100.0 1.3E-29 4.5E-34 237.1 34.8 263 192-475 45-317 (318)
119 2w18_A PALB2, fancn, partner a 100.0 4.9E-30 1.7E-34 232.3 29.9 280 216-513 42-355 (356)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.9E-30 2.3E-34 251.1 30.5 243 264-512 4-336 (450)
121 3vu4_A KMHSV2; beta-propeller 100.0 6.4E-30 2.2E-34 242.8 28.2 234 260-513 15-269 (355)
122 4gq1_A NUP37; propeller, trans 100.0 8.4E-31 2.9E-35 252.5 22.4 252 211-471 87-387 (393)
123 3lrv_A PRE-mRNA-splicing facto 100.0 1.3E-29 4.5E-34 239.8 26.6 268 185-472 51-332 (343)
124 3f3f_A Nucleoporin SEH1; struc 100.0 3.1E-29 1.1E-33 237.4 28.2 281 189-480 30-344 (351)
125 3bws_A Protein LP49; two-domai 100.0 7.4E-28 2.5E-32 235.5 34.6 237 264-513 122-388 (433)
126 1nir_A Nitrite reductase; hemo 100.0 9.6E-27 3.3E-31 232.2 35.6 305 190-513 157-512 (543)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.8E-27 6E-32 230.5 25.1 278 213-513 62-385 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 9.6E-27 3.3E-31 225.4 30.2 277 193-496 94-409 (415)
129 2w18_A PALB2, fancn, partner a 100.0 4E-27 1.4E-31 213.3 23.9 260 195-471 66-355 (356)
130 1nir_A Nitrite reductase; hemo 100.0 3.7E-26 1.3E-30 228.0 29.4 274 220-513 144-456 (543)
131 3vgz_A Uncharacterized protein 100.0 4.4E-25 1.5E-29 209.5 34.8 277 211-505 38-334 (353)
132 2ecf_A Dipeptidyl peptidase IV 99.9 6.4E-26 2.2E-30 237.3 29.7 282 213-512 36-410 (741)
133 1ri6_A Putative isomerase YBHE 99.9 2.8E-25 9.5E-30 209.9 29.3 269 227-512 7-305 (343)
134 3u4y_A Uncharacterized protein 99.9 3.7E-25 1.3E-29 208.2 29.9 277 219-513 3-302 (331)
135 1pby_B Quinohemoprotein amine 99.9 7.9E-25 2.7E-29 206.2 28.5 266 226-513 2-308 (337)
136 2ojh_A Uncharacterized protein 99.9 4.3E-25 1.5E-29 203.8 25.4 254 230-506 17-293 (297)
137 1xfd_A DIP, dipeptidyl aminope 99.9 9.6E-26 3.3E-30 235.3 22.1 284 215-512 18-390 (723)
138 1ri6_A Putative isomerase YBHE 99.9 9.6E-24 3.3E-28 199.3 32.6 275 210-496 34-334 (343)
139 2z3z_A Dipeptidyl aminopeptida 99.9 7.2E-24 2.5E-28 220.5 30.5 279 214-513 82-433 (706)
140 2ecf_A Dipeptidyl peptidase IV 99.9 6.7E-24 2.3E-28 222.0 29.9 276 215-512 110-456 (741)
141 1jmx_B Amine dehydrogenase; ox 99.9 1.4E-23 4.8E-28 198.8 26.4 270 218-513 4-323 (349)
142 3hfq_A Uncharacterized protein 99.9 1.3E-22 4.4E-27 192.1 31.3 244 263-511 38-313 (347)
143 3u4y_A Uncharacterized protein 99.9 9.9E-23 3.4E-27 191.5 29.7 268 189-476 17-307 (331)
144 1xfd_A DIP, dipeptidyl aminope 99.9 1.8E-23 6.2E-28 218.1 26.7 293 193-503 38-428 (723)
145 2oit_A Nucleoporin 214KDA; NH2 99.9 1.9E-22 6.5E-27 195.8 32.0 210 213-428 36-277 (434)
146 3o4h_A Acylamino-acid-releasin 99.9 5.5E-23 1.9E-27 208.7 26.2 268 211-512 19-312 (582)
147 1k32_A Tricorn protease; prote 99.9 7.9E-23 2.7E-27 221.2 28.5 275 212-513 294-635 (1045)
148 1k32_A Tricorn protease; prote 99.9 9.8E-23 3.4E-27 220.4 27.4 276 210-512 200-499 (1045)
149 2z3z_A Dipeptidyl aminopeptida 99.9 1.2E-22 4.2E-27 211.2 26.3 282 216-512 28-388 (706)
150 2ojh_A Uncharacterized protein 99.9 2.1E-22 7E-27 185.8 23.9 234 211-464 39-293 (297)
151 1pby_B Quinohemoprotein amine 99.9 3.9E-22 1.3E-26 187.7 26.0 271 194-485 13-322 (337)
152 3vgz_A Uncharacterized protein 99.9 2.3E-21 7.9E-26 183.8 31.2 240 263-513 39-301 (353)
153 3hfq_A Uncharacterized protein 99.9 2.4E-21 8.2E-26 183.3 28.9 260 211-478 37-324 (347)
154 3scy_A Hypothetical bacterial 99.9 2.3E-20 7.9E-25 177.6 34.0 268 212-493 48-360 (361)
155 2oit_A Nucleoporin 214KDA; NH2 99.9 6.3E-21 2.2E-25 185.1 29.4 216 210-428 89-332 (434)
156 3pe7_A Oligogalacturonate lyas 99.9 2.5E-21 8.4E-26 186.3 25.8 277 219-512 41-379 (388)
157 3scy_A Hypothetical bacterial 99.9 1.9E-20 6.4E-25 178.2 30.5 269 225-511 13-333 (361)
158 1z68_A Fibroblast activation p 99.9 3.5E-22 1.2E-26 208.1 19.2 279 218-512 20-388 (719)
159 1z68_A Fibroblast activation p 99.9 2.2E-21 7.4E-26 202.2 23.2 301 194-512 38-440 (719)
160 1jof_A Carboxy-CIS,CIS-muconat 99.9 5E-20 1.7E-24 175.4 27.7 244 264-512 39-338 (365)
161 3o4h_A Acylamino-acid-releasin 99.9 6.9E-21 2.3E-25 193.3 20.0 233 263-513 20-274 (582)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 3E-19 1E-23 170.0 26.1 253 212-474 38-342 (365)
163 4a5s_A Dipeptidyl peptidase 4 99.8 8.7E-20 3E-24 190.2 23.5 277 214-503 17-381 (740)
164 3fvz_A Peptidyl-glycine alpha- 99.8 9.9E-19 3.4E-23 163.8 27.7 247 264-513 23-320 (329)
165 2oiz_A Aromatic amine dehydrog 99.8 7.1E-19 2.4E-23 166.6 26.2 272 224-513 14-332 (361)
166 3c5m_A Oligogalacturonate lyas 99.8 1.9E-19 6.6E-24 173.4 21.2 275 215-511 37-378 (396)
167 1jmx_B Amine dehydrogenase; ox 99.8 3E-18 1E-22 161.9 28.8 265 191-483 20-335 (349)
168 1q7f_A NHL, brain tumor CG1071 99.8 2.6E-17 8.8E-22 151.0 33.6 241 262-513 27-278 (286)
169 3azo_A Aminopeptidase; POP fam 99.8 1.3E-18 4.4E-23 179.5 27.6 282 211-511 21-363 (662)
170 1q7f_A NHL, brain tumor CG1071 99.8 3.2E-17 1.1E-21 150.4 32.8 251 211-475 27-282 (286)
171 2dg1_A DRP35, lactonase; beta 99.8 7.3E-18 2.5E-22 158.3 25.9 270 214-505 6-300 (333)
172 3fvz_A Peptidyl-glycine alpha- 99.8 3.3E-17 1.1E-21 153.4 29.8 246 213-473 23-322 (329)
173 2oiz_A Aromatic amine dehydrog 99.8 2.1E-17 7.2E-22 156.5 28.0 287 195-497 34-360 (361)
174 4a5s_A Dipeptidyl peptidase 4 99.8 1.4E-17 4.7E-22 173.6 28.6 292 194-503 38-434 (740)
175 3pe7_A Oligogalacturonate lyas 99.8 3.2E-18 1.1E-22 164.5 21.6 256 240-513 14-327 (388)
176 2gop_A Trilobed protease; beta 99.8 8E-17 2.7E-21 152.1 29.0 256 214-511 15-327 (347)
177 2xdw_A Prolyl endopeptidase; a 99.8 5.4E-17 1.8E-21 168.4 27.1 242 262-513 122-412 (710)
178 3azo_A Aminopeptidase; POP fam 99.8 5.8E-17 2E-21 167.1 26.6 254 218-483 81-379 (662)
179 2z2n_A Virginiamycin B lyase; 99.8 1.5E-14 5.2E-19 133.2 38.2 278 211-512 12-292 (299)
180 3c5m_A Oligogalacturonate lyas 99.8 1.1E-17 3.7E-22 161.1 16.4 236 265-513 36-327 (396)
181 1qks_A Cytochrome CD1 nitrite 99.8 9E-15 3.1E-19 145.4 37.1 303 192-513 177-536 (567)
182 3dsm_A Uncharacterized protein 99.8 8.1E-16 2.8E-20 143.7 28.0 260 233-513 15-300 (328)
183 2bkl_A Prolyl endopeptidase; m 99.8 4.4E-17 1.5E-21 168.6 21.3 275 223-513 77-395 (695)
184 3no2_A Uncharacterized protein 99.8 1.1E-15 3.8E-20 138.5 27.7 220 275-503 4-231 (276)
185 2xdw_A Prolyl endopeptidase; a 99.7 4.8E-16 1.6E-20 161.3 27.9 246 211-475 122-416 (710)
186 3e5z_A Putative gluconolactona 99.7 1.8E-15 6E-20 139.4 28.7 230 261-509 24-281 (296)
187 3no2_A Uncharacterized protein 99.7 2.5E-15 8.7E-20 136.1 28.4 245 224-490 4-271 (276)
188 2mad_H Methylamine dehydrogena 99.7 1.8E-14 6.2E-19 136.3 34.5 274 221-513 28-348 (373)
189 3e5z_A Putative gluconolactona 99.7 5.9E-15 2E-19 135.9 29.8 240 211-477 25-290 (296)
190 1rwi_B Serine/threonine-protei 99.7 2.5E-15 8.5E-20 136.4 26.9 236 266-513 25-262 (270)
191 1qks_A Cytochrome CD1 nitrite 99.7 1E-14 3.4E-19 145.1 32.5 272 223-512 165-474 (567)
192 2bkl_A Prolyl endopeptidase; m 99.7 3.3E-16 1.1E-20 162.0 22.1 246 211-476 118-400 (695)
193 2gop_A Trilobed protease; beta 99.7 3.2E-15 1.1E-19 141.1 26.9 234 214-485 59-341 (347)
194 2dg1_A DRP35, lactonase; beta 99.7 1.5E-14 5.2E-19 135.6 30.9 255 205-472 37-315 (333)
195 1rwi_B Serine/threonine-protei 99.7 8.2E-15 2.8E-19 133.0 27.6 242 215-476 25-267 (270)
196 2qc5_A Streptogramin B lactona 99.7 1.4E-13 5E-18 126.7 36.5 279 212-513 18-298 (300)
197 3sjl_D Methylamine dehydrogena 99.7 7.3E-15 2.5E-19 136.9 27.2 276 220-513 39-361 (386)
198 3dsm_A Uncharacterized protein 99.7 8.7E-15 3E-19 136.7 26.4 255 214-492 44-319 (328)
199 1yr2_A Prolyl oligopeptidase; 99.7 7.3E-15 2.5E-19 153.0 25.6 275 223-513 116-439 (741)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 5.4E-14 1.9E-18 130.6 28.5 240 264-513 17-297 (314)
201 2z2n_A Virginiamycin B lyase; 99.7 3.3E-13 1.1E-17 124.2 33.5 239 263-513 13-253 (299)
202 3c75_H MADH, methylamine dehyd 99.7 6.4E-14 2.2E-18 133.1 26.8 272 223-513 82-400 (426)
203 3hrp_A Uncharacterized protein 99.6 4.3E-13 1.5E-17 128.8 31.4 241 265-512 131-407 (409)
204 1yr2_A Prolyl oligopeptidase; 99.6 4.8E-14 1.6E-18 146.8 25.5 245 211-476 160-444 (741)
205 2qc5_A Streptogramin B lactona 99.6 6.8E-12 2.3E-16 115.4 33.8 239 263-513 18-258 (300)
206 1xip_A Nucleoporin NUP159; bet 99.6 2.8E-14 9.5E-19 133.7 17.3 184 215-415 39-230 (388)
207 3g4e_A Regucalcin; six bladed 99.6 2.5E-12 8.4E-17 118.3 29.9 227 264-503 12-260 (297)
208 2mad_H Methylamine dehydrogena 99.6 1.1E-11 3.6E-16 117.4 34.6 270 195-480 50-357 (373)
209 3sjl_D Methylamine dehydrogena 99.6 1.4E-12 4.9E-17 121.5 26.5 289 192-495 59-384 (386)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 4E-12 1.4E-16 117.9 27.2 245 213-473 17-299 (314)
211 2qe8_A Uncharacterized protein 99.5 7.2E-13 2.5E-17 124.5 20.6 269 214-510 17-316 (343)
212 3hrp_A Uncharacterized protein 99.5 1.1E-11 3.6E-16 119.0 28.7 244 214-471 131-408 (409)
213 2ghs_A AGR_C_1268P; regucalcin 99.5 3.4E-11 1.2E-15 112.2 30.3 222 267-503 51-290 (326)
214 3iuj_A Prolyl endopeptidase; h 99.5 2.2E-12 7.6E-17 133.0 23.9 244 211-476 126-408 (693)
215 3dr2_A Exported gluconolactona 99.5 1.3E-11 4.4E-16 113.9 26.7 230 263-511 43-303 (305)
216 3c75_H MADH, methylamine dehyd 99.5 6.8E-12 2.3E-16 119.2 24.8 275 192-480 99-409 (426)
217 3iuj_A Prolyl endopeptidase; h 99.5 6.1E-13 2.1E-17 137.2 19.0 235 263-513 127-403 (693)
218 1xip_A Nucleoporin NUP159; bet 99.5 1.3E-12 4.5E-17 122.4 19.3 177 265-461 38-232 (388)
219 3dr2_A Exported gluconolactona 99.5 1.7E-11 5.7E-16 113.2 25.1 233 211-470 42-303 (305)
220 3g4e_A Regucalcin; six bladed 99.5 9.3E-11 3.2E-15 107.7 28.4 228 213-462 12-261 (297)
221 1mda_H Methylamine dehydrogena 99.4 6E-12 2.1E-16 117.6 19.6 251 236-513 47-344 (368)
222 2ghs_A AGR_C_1268P; regucalcin 99.4 2E-10 6.7E-15 107.0 29.6 226 215-463 50-292 (326)
223 2ece_A 462AA long hypothetical 99.4 6.5E-10 2.2E-14 104.2 29.4 225 274-503 93-399 (462)
224 1yiq_A Quinohemoprotein alcoho 99.4 6.8E-11 2.3E-15 121.1 24.7 285 224-513 69-503 (689)
225 1kb0_A Quinohemoprotein alcoho 99.4 9.5E-11 3.3E-15 119.8 25.6 283 225-513 77-505 (677)
226 2hz6_A Endoplasmic reticulum t 99.4 1.9E-14 6.4E-19 136.5 -3.3 254 224-512 8-276 (369)
227 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1.5E-09 5.2E-14 103.2 30.7 273 224-513 52-335 (376)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.4E-09 4.7E-14 103.6 29.2 256 224-513 102-376 (376)
229 3hxj_A Pyrrolo-quinoline quino 99.3 4.9E-10 1.7E-14 104.5 24.2 262 214-512 60-321 (330)
230 1yiq_A Quinohemoprotein alcoho 99.3 6.2E-10 2.1E-14 114.0 26.6 265 224-500 120-533 (689)
231 2ece_A 462AA long hypothetical 99.3 2.6E-09 8.9E-14 100.2 28.2 237 221-461 89-399 (462)
232 1mda_H Methylamine dehydrogena 99.3 1E-10 3.6E-15 109.3 17.9 278 194-494 48-366 (368)
233 2hz6_A Endoplasmic reticulum t 99.3 1.3E-12 4.5E-17 123.7 5.0 202 275-497 8-216 (369)
234 1kb0_A Quinohemoprotein alcoho 99.3 1.1E-09 3.6E-14 112.1 26.4 266 224-501 127-536 (677)
235 2iwa_A Glutamine cyclotransfer 99.3 6.9E-10 2.4E-14 97.9 21.4 215 201-429 8-237 (266)
236 1npe_A Nidogen, entactin; glyc 99.3 2.5E-08 8.6E-13 89.7 31.8 256 225-497 1-263 (267)
237 1fwx_A Nitrous oxide reductase 99.3 4.8E-10 1.6E-14 108.9 21.4 216 275-503 100-406 (595)
238 2qe8_A Uncharacterized protein 99.3 3.2E-10 1.1E-14 106.3 19.6 205 308-513 17-276 (343)
239 3hxj_A Pyrrolo-quinoline quino 99.2 4.6E-10 1.6E-14 104.7 17.7 258 219-513 25-282 (330)
240 1kv9_A Type II quinohemoprotei 99.1 1.3E-08 4.3E-13 104.0 25.6 285 225-513 66-486 (668)
241 4a2l_A BT_4663, two-component 99.1 1.5E-06 5.2E-11 91.1 40.3 286 213-513 309-612 (795)
242 3nol_A Glutamine cyclotransfer 99.1 2.2E-08 7.4E-13 87.1 21.3 206 202-423 31-250 (262)
243 4a2l_A BT_4663, two-component 99.1 1.5E-06 5E-11 91.3 39.5 283 213-513 262-569 (795)
244 2fp8_A Strictosidine synthase; 99.1 2.7E-08 9.3E-13 92.3 23.3 233 266-513 20-311 (322)
245 1fwx_A Nitrous oxide reductase 99.1 1E-08 3.5E-13 99.7 20.8 234 223-475 99-433 (595)
246 2iwa_A Glutamine cyclotransfer 99.1 8.1E-08 2.8E-12 84.7 24.4 202 266-474 22-238 (266)
247 1npe_A Nidogen, entactin; glyc 99.0 3.2E-07 1.1E-11 82.5 27.7 226 277-513 2-236 (267)
248 2ad6_A Methanol dehydrogenase 99.0 1.2E-07 4E-12 94.9 26.9 282 225-513 62-492 (571)
249 1k3i_A Galactose oxidase precu 99.0 4.1E-08 1.4E-12 100.5 23.8 281 218-504 190-530 (656)
250 1w6s_A Methanol dehydrogenase 99.0 9E-08 3.1E-12 95.6 25.4 284 225-513 62-501 (599)
251 1kv9_A Type II quinohemoprotei 99.0 5.2E-08 1.8E-12 99.5 24.1 268 224-503 116-520 (668)
252 3qqz_A Putative uncharacterize 99.0 1.8E-07 6.2E-12 82.0 23.7 212 259-472 21-252 (255)
253 3mbr_X Glutamine cyclotransfer 99.0 2.1E-07 7E-12 80.4 23.3 206 202-423 9-229 (243)
254 3nok_A Glutaminyl cyclase; bet 99.0 1.5E-07 5.1E-12 81.8 22.3 204 203-423 44-260 (268)
255 2p4o_A Hypothetical protein; p 99.0 2.9E-07 9.8E-12 84.6 25.1 231 265-505 32-278 (306)
256 2fp8_A Strictosidine synthase; 98.9 4.4E-07 1.5E-11 84.0 25.6 246 214-473 19-313 (322)
257 3nol_A Glutamine cyclotransfer 98.9 2.7E-07 9.1E-12 80.3 21.8 194 298-504 33-244 (262)
258 2ad6_A Methanol dehydrogenase 98.9 6.4E-07 2.2E-11 89.5 27.6 267 224-502 114-524 (571)
259 3v64_C Agrin; beta propeller, 98.9 4.9E-06 1.7E-10 77.7 31.3 246 214-481 34-283 (349)
260 1flg_A Protein (quinoprotein e 98.9 2.3E-06 8E-11 85.5 30.6 270 225-500 117-544 (582)
261 2p4o_A Hypothetical protein; p 98.9 3.5E-06 1.2E-10 77.2 29.5 229 214-464 32-279 (306)
262 1ijq_A LDL receptor, low-densi 98.9 5.9E-06 2E-10 76.0 31.0 236 227-480 3-245 (316)
263 1flg_A Protein (quinoprotein e 98.9 4.9E-07 1.7E-11 90.5 24.7 284 225-513 68-514 (582)
264 3v9f_A Two-component system se 98.9 1E-05 3.5E-10 84.6 35.5 287 213-513 257-566 (781)
265 3v9f_A Two-component system se 98.9 9.8E-06 3.4E-10 84.8 35.2 285 214-513 211-522 (781)
266 3nok_A Glutaminyl cyclase; bet 98.9 3.4E-07 1.2E-11 79.6 19.6 192 297-503 44-253 (268)
267 3p5b_L Low density lipoprotein 98.9 1.3E-05 4.4E-10 76.3 32.4 246 227-490 85-337 (400)
268 1w6s_A Methanol dehydrogenase 98.8 4.8E-07 1.7E-11 90.3 22.8 269 219-499 111-530 (599)
269 2xtc_A F-box-like/WD repeat-co 98.8 9.6E-09 3.3E-13 71.2 7.1 38 3-40 1-38 (90)
270 3v65_B Low-density lipoprotein 98.8 7.1E-06 2.4E-10 77.8 29.0 254 216-491 79-336 (386)
271 2xe4_A Oligopeptidase B; hydro 98.8 1.3E-06 4.3E-11 90.7 24.9 242 215-476 175-461 (751)
272 3v64_C Agrin; beta propeller, 98.8 1.3E-05 4.4E-10 74.8 29.5 233 267-512 36-272 (349)
273 2xbg_A YCF48-like protein; pho 98.8 0.0001 3.5E-09 68.1 35.9 278 211-512 33-319 (327)
274 3mbr_X Glutamine cyclotransfer 98.8 2.9E-06 9.8E-11 73.2 22.8 188 265-461 21-222 (243)
275 3tc9_A Hypothetical hydrolase; 98.8 4.2E-06 1.4E-10 80.5 25.9 238 266-513 138-428 (430)
276 1ijq_A LDL receptor, low-densi 98.7 3.7E-05 1.3E-09 70.6 30.9 223 278-512 3-235 (316)
277 4hw6_A Hypothetical protein, I 98.7 9.3E-06 3.2E-10 78.1 26.3 240 265-513 139-431 (433)
278 3v65_B Low-density lipoprotein 98.7 1.4E-05 4.8E-10 75.7 27.1 232 268-512 80-315 (386)
279 3sov_A LRP-6, low-density lipo 98.6 3.4E-05 1.2E-09 70.8 27.0 236 227-480 6-245 (318)
280 3qqz_A Putative uncharacterize 98.6 6.1E-05 2.1E-09 66.0 27.1 205 305-512 24-250 (255)
281 3tc9_A Hypothetical hydrolase; 98.6 2.3E-05 7.9E-10 75.3 26.5 244 215-471 138-428 (430)
282 4hw6_A Hypothetical protein, I 98.6 3.5E-05 1.2E-09 74.1 27.7 244 214-472 139-432 (433)
283 2xe4_A Oligopeptidase B; hydro 98.6 8.3E-06 2.8E-10 84.6 22.8 195 266-471 175-398 (751)
284 1bpo_A Protein (clathrin); cla 98.5 0.00039 1.3E-08 64.5 30.2 251 234-508 47-324 (494)
285 3p5b_L Low density lipoprotein 98.5 0.0002 7E-09 68.0 28.9 223 278-512 85-317 (400)
286 3m0c_C LDL receptor, low-densi 98.5 0.00018 6.2E-09 74.1 30.2 210 263-481 422-640 (791)
287 3sov_A LRP-6, low-density lipo 98.5 0.00011 3.7E-09 67.5 25.5 225 278-512 6-235 (318)
288 2xzh_A Clathrin heavy chain 1; 98.4 0.00076 2.6E-08 60.1 32.9 250 235-508 49-325 (365)
289 3kya_A Putative phosphatase; s 98.4 0.00012 4.2E-09 70.5 25.6 240 266-512 140-472 (496)
290 1n7d_A LDL receptor, low-densi 98.4 2E-06 6.8E-11 88.1 14.0 219 265-491 406-632 (699)
291 1k3i_A Galactose oxidase precu 98.4 2.3E-05 7.8E-10 80.1 21.4 239 269-513 190-495 (656)
292 2p9w_A MAL S 1 allergenic prot 98.3 8.6E-05 3E-09 66.9 19.2 166 308-474 13-216 (334)
293 3kya_A Putative phosphatase; s 98.3 0.00066 2.3E-08 65.4 25.9 253 215-476 140-478 (496)
294 3amr_A 3-phytase; beta-propell 98.2 0.00051 1.8E-08 62.4 23.1 187 318-512 39-260 (355)
295 4a0p_A LRP6, LRP-6, low-densit 98.2 0.0054 1.8E-07 61.8 32.1 233 227-480 8-244 (628)
296 4a0p_A LRP6, LRP-6, low-densit 98.2 0.0024 8.2E-08 64.3 29.4 223 278-512 8-234 (628)
297 2xbg_A YCF48-like protein; pho 98.2 0.0016 5.4E-08 60.0 26.2 239 213-471 79-320 (327)
298 2p9w_A MAL S 1 allergenic prot 98.2 0.0012 4.2E-08 59.4 24.1 205 266-472 14-264 (334)
299 3amr_A 3-phytase; beta-propell 98.2 0.0015 5.2E-08 59.4 24.9 193 275-481 39-272 (355)
300 3m0c_C LDL receptor, low-densi 98.2 0.0026 8.8E-08 65.7 29.7 221 278-510 397-627 (791)
301 2ism_A Putative oxidoreductase 98.2 0.0012 4.2E-08 61.4 25.2 235 214-461 31-333 (352)
302 3s94_A LRP-6, low-density lipo 98.1 0.0048 1.7E-07 62.0 30.9 287 214-511 84-419 (619)
303 2ism_A Putative oxidoreductase 98.1 0.0036 1.2E-07 58.2 27.7 229 265-503 31-333 (352)
304 3s94_A LRP-6, low-density lipo 98.1 0.0023 7.8E-08 64.4 27.2 206 264-479 39-249 (619)
305 1n7d_A LDL receptor, low-densi 98.1 2.7E-05 9.3E-10 79.7 13.0 217 285-512 385-611 (699)
306 2vpj_A Kelch-like protein 12; 98.0 0.0012 4E-08 60.1 20.9 224 275-513 14-276 (301)
307 3a9g_A Putative uncharacterize 98.0 0.012 4.2E-07 54.6 27.9 236 265-503 29-330 (354)
308 2vpj_A Kelch-like protein 12; 97.9 0.0028 9.7E-08 57.5 22.0 189 275-475 62-280 (301)
309 2xn4_A Kelch-like protein 2; s 97.9 0.0038 1.3E-07 56.7 22.7 225 276-513 16-274 (302)
310 2g8s_A Glucose/sorbosone dehyd 97.9 0.016 5.4E-07 53.8 28.5 249 214-467 18-348 (353)
311 1uuj_A Platelet-activating fac 97.9 1.6E-05 5.5E-10 54.7 4.7 53 7-61 10-62 (88)
312 3ii7_A Kelch-like protein 7; p 97.8 0.0046 1.6E-07 56.2 22.4 223 277-513 13-270 (306)
313 3sre_A PON1, serum paraoxonase 97.8 0.0046 1.6E-07 57.0 22.1 193 268-472 53-297 (355)
314 3ei3_A DNA damage-binding prot 97.8 0.052 1.8E-06 58.6 33.3 130 372-510 808-950 (1158)
315 1xi4_A Clathrin heavy chain; a 97.8 0.0029 1E-07 67.6 22.8 235 235-493 48-309 (1630)
316 3a9g_A Putative uncharacterize 97.8 0.02 6.8E-07 53.2 30.9 235 213-461 28-330 (354)
317 3ott_A Two-component system se 97.8 0.034 1.1E-06 57.8 31.1 235 264-513 21-258 (758)
318 3ei3_A DNA damage-binding prot 97.8 0.073 2.5E-06 57.5 36.5 223 214-460 514-754 (1158)
319 3sre_A PON1, serum paraoxonase 97.7 0.011 3.7E-07 54.5 23.0 200 215-427 51-296 (355)
320 4asc_A Kelch repeat and BTB do 97.7 0.016 5.4E-07 52.9 23.8 214 278-505 7-253 (315)
321 1zgk_A Kelch-like ECH-associat 97.7 0.006 2.1E-07 55.5 20.7 225 275-513 24-285 (308)
322 2xn4_A Kelch-like protein 2; s 97.7 0.0085 2.9E-07 54.3 21.0 189 275-476 61-279 (302)
323 3ii7_A Kelch-like protein 7; p 97.6 0.011 3.6E-07 53.8 21.5 230 226-475 13-274 (306)
324 2g8s_A Glucose/sorbosone dehyd 97.6 0.032 1.1E-06 51.8 24.2 244 265-509 18-348 (353)
325 3das_A Putative oxidoreductase 97.6 0.048 1.6E-06 50.0 27.5 151 211-366 29-218 (347)
326 1cru_A Protein (soluble quinop 97.5 0.07 2.4E-06 51.3 31.2 113 213-326 26-162 (454)
327 4asc_A Kelch repeat and BTB do 97.5 0.036 1.2E-06 50.5 23.1 230 227-477 7-281 (315)
328 2be1_A Serine/threonine-protei 97.5 0.00084 2.9E-08 61.3 11.6 199 277-478 11-236 (339)
329 1zgk_A Kelch-like ECH-associat 97.5 0.019 6.4E-07 52.2 20.7 233 222-476 22-290 (308)
330 2woz_A Kelch repeat and BTB do 97.4 0.026 8.9E-07 51.5 21.0 213 278-505 18-263 (318)
331 3s25_A Hypothetical 7-bladed b 97.4 0.08 2.7E-06 47.7 23.6 178 270-475 58-257 (302)
332 3pbp_A Nucleoporin NUP82; beta 97.3 0.017 6E-07 53.7 18.1 151 316-469 29-208 (452)
333 3pbp_A Nucleoporin NUP82; beta 97.2 0.018 6E-07 53.6 16.7 150 272-425 28-208 (452)
334 1tl2_A L10, protein (tachylect 97.1 0.018 6.2E-07 48.3 14.6 142 214-373 41-203 (236)
335 2be1_A Serine/threonine-protei 97.1 0.033 1.1E-06 50.9 17.7 147 226-381 11-184 (339)
336 3das_A Putative oxidoreductase 97.1 0.062 2.1E-06 49.3 19.4 153 348-502 30-219 (347)
337 3ott_A Two-component system se 97.1 0.37 1.3E-05 49.9 36.6 267 213-506 21-299 (758)
338 2uvk_A YJHT; unknown function, 97.0 0.17 5.7E-06 46.9 22.5 58 421-480 286-349 (357)
339 2woz_A Kelch repeat and BTB do 97.0 0.15 5.2E-06 46.3 21.8 194 273-477 54-291 (318)
340 3s25_A Hypothetical 7-bladed b 97.0 0.13 4.6E-06 46.2 20.8 197 273-502 22-240 (302)
341 2xzh_A Clathrin heavy chain 1; 97.0 0.17 5.8E-06 45.3 27.8 239 218-474 71-333 (365)
342 2uvk_A YJHT; unknown function, 97.0 0.038 1.3E-06 51.4 17.7 222 275-506 19-327 (357)
343 1bpo_A Protein (clathrin); cla 97.0 0.24 8.1E-06 46.3 28.2 240 218-475 70-333 (494)
344 1tl2_A L10, protein (tachylect 96.9 0.13 4.3E-06 43.3 17.6 97 276-378 4-114 (236)
345 1cru_A Protein (soluble quinop 96.9 0.19 6.5E-06 48.3 21.6 112 350-461 27-162 (454)
346 2zwa_A Leucine carboxyl methyl 96.6 0.1 3.4E-06 53.4 18.7 203 274-477 396-639 (695)
347 3sbq_A Nitrous-oxide reductase 96.5 0.7 2.4E-05 44.7 22.9 273 228-503 73-453 (638)
348 3b7f_A Glycosyl hydrolase, BNR 96.3 0.73 2.5E-05 43.2 27.5 223 265-493 115-391 (394)
349 1xi4_A Clathrin heavy chain; a 96.2 0.44 1.5E-05 51.6 20.5 239 219-475 71-333 (1630)
350 3b7f_A Glycosyl hydrolase, BNR 95.8 1.2 4.2E-05 41.7 29.2 242 264-509 54-366 (394)
351 2zwa_A Leucine carboxyl methyl 95.4 0.71 2.4E-05 47.1 17.9 153 317-475 396-579 (695)
352 2wg3_C Hedgehog-interacting pr 94.1 4.2 0.00014 38.9 30.7 112 214-327 14-158 (463)
353 3qhy_B Beta-lactamase inhibito 93.8 3.3 0.00011 36.6 20.8 217 265-511 24-242 (282)
354 3sbq_A Nitrous-oxide reductase 92.0 1.5 5.1E-05 42.4 11.5 102 265-369 323-454 (638)
355 3l6v_A GYRA, DNA gyrase subuni 91.4 8.7 0.0003 35.4 25.2 228 272-508 3-309 (370)
356 2d68_A FOP, FGFR1OP; alpha hel 90.9 0.38 1.3E-05 32.8 4.7 28 10-37 21-48 (82)
357 3q6k_A 43.2 kDa salivary prote 90.9 9.8 0.00034 35.1 18.5 141 372-513 124-304 (381)
358 3uc1_A DNA gyrase subunit A; D 90.9 9 0.00031 34.6 21.6 167 211-380 92-279 (327)
359 1zi0_A DNA gyrase subunit A; b 90.8 8.8 0.0003 34.3 25.5 230 274-509 1-271 (307)
360 3qhy_B Beta-lactamase inhibito 90.0 9.5 0.00032 33.6 21.8 239 215-496 25-265 (282)
361 2wg3_C Hedgehog-interacting pr 89.6 15 0.0005 35.1 27.6 106 265-370 14-159 (463)
362 1wp5_A Topoisomerase IV; broke 89.0 13 0.00044 33.5 27.5 243 223-473 3-277 (323)
363 3kci_A Probable E3 ubiquitin-p 88.9 15 0.0005 34.2 26.1 194 309-511 54-289 (389)
364 4hvt_A Ritya.17583.B, post-pro 88.6 23 0.00078 36.0 23.1 244 217-472 132-429 (711)
365 1suu_A DNA gyrase subunit A; t 88.3 14 0.00047 33.1 27.7 194 274-473 6-231 (312)
366 4gq2_M Nucleoporin NUP120; bet 88.3 28 0.00097 36.8 20.2 77 351-428 237-316 (950)
367 4gq2_M Nucleoporin NUP120; bet 87.4 9.4 0.00032 40.4 14.6 40 264-303 235-274 (950)
368 3q6k_A 43.2 kDa salivary prote 86.9 19 0.00064 33.2 20.2 173 330-503 124-342 (381)
369 1suu_A DNA gyrase subunit A; t 86.7 17 0.00059 32.5 28.8 240 223-471 6-281 (312)
370 3uc1_A DNA gyrase subunit A; D 86.5 18 0.00062 32.6 26.7 274 226-506 4-321 (327)
371 1wp5_A Topoisomerase IV; broke 85.7 20 0.00068 32.3 24.1 191 274-473 3-225 (323)
372 3no0_A DNA gyrase subunit A; D 83.3 23 0.00078 31.0 22.7 197 307-510 23-239 (276)
373 4fhn_B Nucleoporin NUP120; pro 83.3 29 0.00099 37.7 16.3 40 351-390 239-278 (1139)
374 1sqj_A OXG-RCBH, oligoxylogluc 82.3 49 0.0017 34.1 28.3 158 264-423 14-195 (789)
375 3lpz_A GET4 (YOR164C homolog); 80.4 8.8 0.0003 34.6 9.1 117 43-180 15-134 (336)
376 3no0_A DNA gyrase subunit A; D 80.3 29 0.001 30.3 21.8 165 210-379 64-245 (276)
377 1zi0_A DNA gyrase subunit A; b 78.9 35 0.0012 30.4 27.0 245 223-473 1-277 (307)
378 3l6v_A GYRA, DNA gyrase subuni 76.0 48 0.0016 30.4 27.1 242 222-472 4-315 (370)
379 2xz2_A CSTF-50, isoform B; RNA 75.6 4 0.00014 26.1 3.8 34 5-38 14-47 (66)
380 2nxp_A Transcription initiatio 75.0 5.3 0.00018 31.5 5.5 68 44-120 31-98 (156)
381 4hvt_A Ritya.17583.B, post-pro 74.0 80 0.0027 32.0 21.7 225 267-503 131-415 (711)
382 2cn3_A Xyloglucanase, beta-1,4 71.5 93 0.0032 31.7 28.1 103 266-369 24-152 (737)
383 3f7f_A Nucleoporin NUP120; nuc 70.4 25 0.00086 35.4 10.2 37 265-303 222-258 (729)
384 1sqj_A OXG-RCBH, oligoxylogluc 69.3 1.1E+02 0.0037 31.6 23.5 161 306-467 13-195 (789)
385 2j4b_A TAF5, transcription ini 68.4 17 0.00058 27.9 6.8 31 72-102 33-63 (138)
386 2zux_A YESW protein; beta-prop 68.0 93 0.0032 30.3 21.8 201 287-495 152-424 (591)
387 3kci_A Probable E3 ubiquitin-p 64.4 88 0.003 28.8 32.2 237 266-511 54-341 (389)
388 4a9v_A PHOX; hydrolase, beta-p 64.2 27 0.00092 34.1 8.8 62 265-326 476-549 (592)
389 2wpv_A GET4, UPF0363 protein Y 63.8 50 0.0017 29.4 9.9 117 43-180 16-132 (312)
390 3zwu_A Alkaline phosphatase PH 63.8 26 0.00089 34.5 8.8 60 266-325 477-548 (592)
391 4gco_A Protein STI-1; structur 63.7 22 0.00074 26.4 6.8 100 16-119 22-123 (126)
392 3zwu_A Alkaline phosphatase PH 62.9 26 0.00088 34.6 8.6 58 445-502 478-548 (592)
393 4a9v_A PHOX; hydrolase, beta-p 62.5 39 0.0013 33.0 9.5 60 443-502 476-548 (592)
394 3mez_B Mannose-specific lectin 60.9 45 0.0016 24.3 10.0 25 311-337 59-83 (113)
395 4fhn_B Nucleoporin NUP120; pro 59.6 22 0.00076 38.5 8.3 38 309-346 239-276 (1139)
396 2yvq_A Carbamoyl-phosphate syn 59.5 11 0.00038 29.1 4.4 58 6-65 35-106 (143)
397 3mkr_A Coatomer subunit epsilo 57.8 46 0.0016 29.1 8.9 86 9-100 66-156 (291)
398 2j49_A Transcription initiatio 51.7 21 0.00071 27.7 4.7 30 71-101 34-63 (148)
399 2vgx_A Chaperone SYCD; alterna 50.6 55 0.0019 24.9 7.3 90 13-103 27-118 (148)
400 3a0f_A Xyloglucanase; beta-pro 49.5 2.3E+02 0.0079 28.9 29.3 156 263-420 19-203 (763)
401 2xcb_A PCRH, regulatory protei 45.9 78 0.0027 23.6 7.5 90 13-103 24-115 (142)
402 2xev_A YBGF; tetratricopeptide 45.8 80 0.0027 22.6 8.6 92 10-101 5-103 (129)
403 2cn3_A Xyloglucanase, beta-1,4 41.3 3E+02 0.01 27.9 26.3 106 400-507 385-499 (737)
404 3f7f_A Nucleoporin NUP120; nuc 40.0 3.1E+02 0.011 27.7 17.3 36 352-389 224-259 (729)
405 2jvf_A De novo protein M7; tet 38.5 9.1 0.00031 24.6 0.6 19 7-25 62-80 (96)
406 2lni_A Stress-induced-phosphop 38.3 1.1E+02 0.0036 21.9 8.4 92 9-101 18-111 (133)
407 2k9m_A RNA polymerase sigma fa 38.0 38 0.0013 25.6 4.1 32 8-39 22-54 (130)
408 1zvt_A Topoisomerase IV subuni 37.9 1.9E+02 0.0065 24.7 14.5 149 320-473 3-163 (256)
409 1zvu_A Topoisomerase IV subuni 37.6 3.3E+02 0.011 27.4 14.2 74 350-428 554-632 (716)
410 1zvt_A Topoisomerase IV subuni 36.8 2E+02 0.0068 24.6 17.3 145 277-428 3-162 (256)
411 3lc0_A Histidyl-tRNA synthetas 36.6 2.1E+02 0.0072 27.0 10.1 16 8-23 163-178 (456)
412 3upv_A Heat shock protein STI1 36.5 96 0.0033 22.2 6.5 91 11-102 8-100 (126)
413 1elw_A TPR1-domain of HOP; HOP 34.9 1.1E+02 0.0038 21.0 8.2 89 11-100 8-98 (118)
414 2eap_A Lymphocyte cytosolic pr 34.0 31 0.0011 23.7 2.7 22 14-36 27-48 (90)
415 4asv_A Small glutamine-rich te 33.6 25 0.00085 24.4 2.2 18 3-20 15-32 (92)
416 2dba_A Smooth muscle cell asso 33.2 1.4E+02 0.0048 21.7 8.9 91 10-101 31-126 (148)
417 1vk8_A Hypothetical protein TM 33.1 13 0.00045 26.9 0.8 34 27-65 38-71 (106)
418 4ga2_A E3 SUMO-protein ligase 33.0 1.4E+02 0.0048 22.5 7.1 67 51-121 42-109 (150)
419 2kc7_A BFR218_protein; tetratr 32.8 81 0.0028 21.3 5.3 53 49-101 9-62 (99)
420 3qou_A Protein YBBN; thioredox 32.8 2.1E+02 0.0071 24.6 9.0 82 17-99 127-210 (287)
421 3ct5_A Morphogenesis protein 1 32.7 26 0.0009 27.6 2.6 32 7-38 14-50 (159)
422 1kdl_A YOPD protein; yersinia, 31.9 27 0.00093 17.3 1.6 13 8-20 5-17 (26)
423 1oyi_A Double-stranded RNA-bin 31.4 20 0.00068 24.5 1.5 33 5-39 13-45 (82)
424 2cp8_A NEXT to BRCA1 gene 1 pr 30.8 19 0.00064 22.2 1.1 23 4-26 2-24 (54)
425 4g26_A Pentatricopeptide repea 30.2 2.8E+02 0.0097 26.5 10.1 89 11-102 109-203 (501)
426 3ma5_A Tetratricopeptide repea 30.0 64 0.0022 22.3 4.2 51 51-102 18-69 (100)
427 1hxi_A PEX5, peroxisome target 29.2 97 0.0033 22.3 5.3 53 48-101 25-78 (121)
428 1xks_A Nuclear pore complex pr 28.8 3.7E+02 0.013 25.3 15.3 154 354-512 42-234 (450)
429 3s9j_A Member of DUF4221 famil 28.7 3.4E+02 0.012 24.7 9.9 81 358-439 36-120 (369)
430 4f3v_A ESX-1 secretion system 28.7 2.9E+02 0.01 24.0 9.4 92 6-100 100-197 (282)
431 4d9s_A UVB-resistance protein 27.1 3.7E+02 0.013 24.7 29.9 232 270-511 19-301 (406)
432 1na3_A Designed protein CTPR2; 26.2 1.3E+02 0.0045 19.5 5.3 50 51-101 20-70 (91)
433 1q47_A Semaphorin 3A; beta pro 26.0 1.7E+02 0.0058 28.0 7.5 56 455-510 422-487 (495)
434 4gco_A Protein STI-1; structur 25.8 1.1E+02 0.0038 22.3 5.1 65 50-118 23-88 (126)
435 1zvu_A Topoisomerase IV subuni 25.5 5.3E+02 0.018 25.9 15.9 149 317-473 470-633 (716)
436 3urz_A Uncharacterized protein 25.1 2.4E+02 0.0082 22.6 7.6 94 8-102 5-116 (208)
437 3sz7_A HSC70 cochaperone (SGT) 24.9 2.3E+02 0.0077 21.4 7.6 90 12-102 16-107 (164)
438 1xwr_A Regulatory protein CII; 24.8 1.9E+02 0.0063 20.4 5.8 69 7-85 10-78 (97)
439 1v32_A AT5G08430, hypothetical 24.4 24 0.00083 25.2 1.0 22 4-25 34-55 (101)
440 3q49_B STIP1 homology and U bo 24.2 2E+02 0.0068 20.6 6.6 90 11-101 13-104 (137)
441 2xcb_A PCRH, regulatory protei 23.7 1.2E+02 0.0039 22.6 5.0 53 49-102 27-80 (142)
442 3upv_A Heat shock protein STI1 23.4 1.4E+02 0.0047 21.3 5.3 52 50-102 14-66 (126)
443 3k9i_A BH0479 protein; putativ 23.4 1.6E+02 0.0053 20.8 5.5 47 54-100 4-53 (117)
444 2k9l_A RNA polymerase sigma fa 23.3 37 0.0013 22.7 1.7 33 7-39 30-63 (76)
445 1hxi_A PEX5, peroxisome target 22.8 1.3E+02 0.0043 21.7 4.9 92 8-100 18-111 (121)
446 2lni_A Stress-induced-phosphop 22.2 1.5E+02 0.0053 20.9 5.4 52 50-102 26-78 (133)
447 3qww_A SET and MYND domain-con 22.0 2.9E+02 0.0099 25.8 8.2 76 45-120 303-388 (433)
448 2h6f_A Protein farnesyltransfe 22.0 1.9E+02 0.0066 26.4 6.9 24 9-32 98-122 (382)
449 3mkq_B Coatomer subunit alpha; 21.8 1.4E+02 0.0047 23.9 5.0 56 44-104 9-64 (177)
450 2xpi_A Anaphase-promoting comp 21.3 5.4E+02 0.019 24.6 11.6 18 83-100 209-226 (597)
451 4gof_A Small glutamine-rich te 21.0 55 0.0019 20.0 1.9 14 7-20 2-15 (52)
452 1yqh_A DUF77, IG hypothetical 20.9 30 0.001 25.1 0.9 30 31-65 34-63 (109)
453 2ibo_A Hypothetical protein SP 20.8 27 0.00092 25.1 0.6 30 31-65 29-58 (104)
454 1lxj_A YBL001C, hypothetical 1 20.7 24 0.00084 25.4 0.4 36 25-65 27-62 (104)
455 3sz7_A HSC70 cochaperone (SGT) 20.5 1.6E+02 0.0054 22.4 5.3 66 50-119 21-87 (164)
456 2ko6_A Uncharacterized protein 20.4 1.1E+02 0.0038 20.5 3.3 32 8-39 7-41 (89)
457 2zuy_A YESX protein; beta-prop 20.2 6.2E+02 0.021 24.8 19.7 105 371-482 296-413 (620)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-55 Score=428.76 Aligned_cols=284 Identities=25% Similarity=0.446 Sum_probs=263.0
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
+|.+.|++++|+|++++|++|+.||+|+ +||+.+++... .+.+|...|.+++|+|++++|++|+.|++|++
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~-vwd~~~~~~~~--------~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIK-VWDYETGDFER--------TLKGHTDSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEE-EEETTTCCCCE--------EECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCcEEE--------EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 9999999999999999999999999997 99999887554 45569999999999999999999999999999
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCC
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 370 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 370 (513)
||+.+++++..+. +|...|.+++|+|++++|++|+.|++|++||++++..+..+.+|...|.++.++|++.++++++.|
T Consensus 177 wd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 177 WDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp EETTSSCEEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeCCCCceeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 9999999988886 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC-------------------CCeEEEEcCCCcEEEEEcc-Ce
Q 010324 371 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN-------------------PDHIVVCNKTSSIYIMTLQ-GQ 430 (513)
Q Consensus 371 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~l~~~~~~~~i~i~d~~-~~ 430 (513)
|.|++||++++++...+. +|...+.++.|+|+. +.++++++.|+.|++||++ +.
T Consensus 256 ~~v~vwd~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 256 QTVRVWVVATKECKAELR------EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp SCEEEEETTTCCEEEEEC------CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred CeEEEEECCCCceeeEec------CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 999999999998887765 577899999999963 3689999999999999998 55
Q ss_pred EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 431 VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
.+..+.. |...+.+++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+|++++|++|+.||+|+|
T Consensus 330 ~~~~~~~---h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 330 CLMTLVG---HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406 (410)
T ss_dssp EEEEEEC---CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred eEEEEEC---CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 5555543 4567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 010324 511 WKP 513 (513)
Q Consensus 511 Wdp 513 (513)
|+.
T Consensus 407 W~~ 409 (410)
T 1vyh_C 407 WEC 409 (410)
T ss_dssp EC-
T ss_pred EeC
Confidence 984
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-47 Score=363.07 Aligned_cols=290 Identities=20% Similarity=0.360 Sum_probs=258.7
Q ss_pred cceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE
Q 010324 203 TLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 282 (513)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 282 (513)
...+++. +|.+.|++++|+|+|++|++|+.||+|+ +||..++..... +..|...|.+++|+|++++|++|
T Consensus 46 ~~~~~l~-gH~~~v~~~~~s~d~~~l~s~s~Dg~v~-iWd~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l~s~ 115 (340)
T 1got_B 46 RTRRTLR-GHLAKIYAMHWGTDSRLLLSASQDGKLI-IWDSYTTNKVHA--------IPLRSSWVMTCAYAPSGNYVACG 115 (340)
T ss_dssp CEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEE-EEETTTCCEEEE--------EECSSSCEEEEEECTTSSEEEEE
T ss_pred hhheeec-CCCCceEEEEECCCCCEEEEEeCCCcEE-EEECCCCCcceE--------eecCCccEEEEEECCCCCEEEEE
Confidence 3445565 9999999999999999999999999997 999988765543 34589999999999999999999
Q ss_pred eCCCcEEEEEcCCcc----eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEc
Q 010324 283 SQDGKIKVWRIRSGQ----CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT 358 (513)
Q Consensus 283 ~~dg~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 358 (513)
+.|+.|++||+.++. ....+. +|...|.++.|++++ .+++++.|+.|++||+++++.+..+.+|...|.+++|+
T Consensus 116 ~~d~~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~ 193 (340)
T 1got_B 116 GLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193 (340)
T ss_dssp ETTCEEEEEETTTCSBSCEEEEEEE-CCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred eCCCeEEEEECccCCCcceeEEEec-CCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEEC
Confidence 999999999998753 334444 799999999999877 48999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEEEeec
Q 010324 359 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSS 437 (513)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~ 437 (513)
|+++++++|+.||.|++||++++.....+. +|...|.+++|+|++ ..+++++.|+.|++||++. ..+..+.
T Consensus 194 ~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~------~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~- 265 (340)
T 1got_B 194 PDTRLFVSGACDASAKLWDVREGMCRQTFT------GHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYS- 265 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEEC------CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEEC-
T ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEEc------CCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEc-
Confidence 999999999999999999999998888775 677899999999987 8999999999999999984 4444433
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.......+.+++|+|+|+++++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++.+|+||+.||+|+|||
T Consensus 266 ~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 333345799999999999999999999999999999999999999999999999999999999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.5e-47 Score=356.34 Aligned_cols=286 Identities=17% Similarity=0.339 Sum_probs=258.4
Q ss_pred ccccCceeEEEECCC----CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC
Q 010324 210 FGTKSHAECARFSPD----GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~----g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 285 (513)
.+|.+.|++++|+|+ +.+|++|+.|++|+ +|++.++... ....+.+|...|.+++|+|++.++++++.|
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~-vW~~~~~~~~------~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVK-VWKWRDERLD------LQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEE-EEEEETTEEE------EEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEE-EEECCCCCee------eeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 389999999999984 67999999999998 9998765432 122466799999999999999999999999
Q ss_pred CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEE
Q 010324 286 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVV 365 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 365 (513)
++|++||+.+++.+..+. .+...+.+++|+|++++|++|+.||.|++||+++++....+..+...|.+++|+|++++|+
T Consensus 102 ~~i~lWd~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la 180 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA 180 (321)
T ss_dssp SEEEEEETTTTEEEEEEE-CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred CcEEEEECCCCCEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEE
Confidence 999999999999988886 7788899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEEEeecCccCCCc
Q 010324 366 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKREGGD 444 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~~~ 444 (513)
+++.||.|++||+++++.+..+. +|...|.+++|+|++ .++++++.|+.|++||++. .....+. .+...
T Consensus 181 sg~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~ 250 (321)
T 3ow8_A 181 SGAIDGIINIFDIATGKLLHTLE------GHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLAGTLS---GHASW 250 (321)
T ss_dssp EEETTSCEEEEETTTTEEEEEEC------CCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCEEEEEC---CCSSC
T ss_pred EEcCCCeEEEEECCCCcEEEEEc------ccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcceeEEEc---CCCCc
Confidence 99999999999999998888775 577899999999987 8999999999999999984 4444443 34667
Q ss_pred EEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 445 FVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 445 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+.+++|+|++++|++|+.||.|++||+.+++++..+.+|.+.|.+++|+|++.+|++++.||+|++||.
T Consensus 251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999984
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1e-46 Score=358.46 Aligned_cols=292 Identities=22% Similarity=0.351 Sum_probs=257.9
Q ss_pred cceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE
Q 010324 203 TLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 282 (513)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 282 (513)
...+++. +|.+.|+|++|+|++++||+|+.||+|+ +||..+++.... +..|...|.+++|+|+|.++++|
T Consensus 55 ~~~~~l~-gH~~~V~~~~~s~d~~~l~s~s~Dg~v~-vWd~~~~~~~~~--------~~~~~~~v~~~~~sp~g~~lasg 124 (354)
T 2pbi_B 55 KTRRTLK-GHGNKVLCMDWCKDKRRIVSSSQDGKVI-VWDSFTTNKEHA--------VTMPCTWVMACAYAPSGCAIACG 124 (354)
T ss_dssp CEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTCCEEEE--------EECSSSCCCEEEECTTSSEEEEE
T ss_pred EEEEEec-CCCCeEEEEEECCCCCEEEEEeCCCeEE-EEECCCCCcceE--------EecCCCCEEEEEECCCCCEEEEe
Confidence 4455665 9999999999999999999999999997 999887765443 33488899999999999999999
Q ss_pred eCCCcEEEEEcCCc------ceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEE
Q 010324 283 SQDGKIKVWRIRSG------QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAI 356 (513)
Q Consensus 283 ~~dg~i~vwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 356 (513)
+.|+.+++|++... .....+. .|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|...|.+++
T Consensus 125 ~~d~~i~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~ 203 (354)
T 2pbi_B 125 GLDNKCSVYPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD 203 (354)
T ss_dssp STTSEEEEEECCCCTTCCSGGGCEEEE-ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred eCCCCEEEEEEeccccccccccceeee-ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEE
Confidence 99999999998643 2233443 7899999999999999999999999999999999999999999999999999
Q ss_pred Ecc--CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEE
Q 010324 357 FTN--DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKS 434 (513)
Q Consensus 357 ~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 434 (513)
|+| ++++|++|+.||.|++||+++++++..+. +|...|.+++|+|++ ..+++++.|+.|++||++......
T Consensus 204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~------~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~~ 276 (354)
T 2pbi_B 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE------THESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADREVA 276 (354)
T ss_dssp ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC------CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec------CCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEE
Confidence 987 57899999999999999999999888775 677899999999987 899999999999999998543333
Q ss_pred eecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
..........+.+++|+|+|+++++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|++.+|++|+.||+|+||+
T Consensus 277 ~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 277 IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 333333345688999999999999999999999999999999999999999999999999999999999999999996
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5e-45 Score=339.46 Aligned_cols=289 Identities=21% Similarity=0.335 Sum_probs=252.0
Q ss_pred ceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEe
Q 010324 204 LSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS 283 (513)
Q Consensus 204 ~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 283 (513)
..+++. +|.+.|++++|+|+|++|++|+.||.|+ +||+.++..... +.+|..+|.+++|+|++++|++|+
T Consensus 5 ~~~~~~-~h~~~V~~~~fsp~~~~l~s~~~dg~v~-lWd~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~s~s 74 (304)
T 2ynn_A 5 IKKTFS-NRSDRVKGIDFHPTEPWVLTTLYSGRVE-LWNYETQVEVRS--------IQVTETPVRAGKFIARKNWIIVGS 74 (304)
T ss_dssp CEEEEE-EECSCEEEEEECSSSSEEEEEETTSEEE-EEETTTTEEEEE--------EECCSSCEEEEEEEGGGTEEEEEE
T ss_pred eEEeec-CCCCceEEEEECCCCCEEEEEcCCCcEE-EEECCCCceeEE--------eeccCCcEEEEEEeCCCCEEEEEC
Confidence 345555 8999999999999999999999999997 999988765543 345899999999999999999999
Q ss_pred CCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC-ceeeEecccccceeEEEEcc-CC
Q 010324 284 QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTN-DG 361 (513)
Q Consensus 284 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~ 361 (513)
.|+.|++||+.+++.+..+. +|...|.+++|+|++++|++|+.||+|++||++++ .....+.+|...|.+++|+| ++
T Consensus 75 ~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 153 (304)
T 2ynn_A 75 DDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP 153 (304)
T ss_dssp TTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCT
T ss_pred CCCEEEEEECCCCcEEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCC
Confidence 99999999999999998887 89999999999999999999999999999999887 45567889999999999999 67
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC-CCCeEEEEcCCCcEEEEEcc-CeEEEEeecCc
Q 010324 362 SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK-NPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGK 439 (513)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~ 439 (513)
..|++|+.||+|++||++++.....+.. .+...+..+.+.|. +..++++++.|+.|++||++ +..+..+..
T Consensus 154 ~~l~sgs~D~~v~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-- 226 (304)
T 2ynn_A 154 STFASGCLDRTVKVWSLGQSTPNFTLTT-----GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG-- 226 (304)
T ss_dssp TEEEEEETTSEEEEEETTCSSCSEEEEC-----CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC--
T ss_pred CEEEEEeCCCeEEEEECCCCCccceecc-----CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC--
Confidence 8999999999999999988776555542 34567888999874 34789999999999999998 455555543
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCC--EEEEEECCCeEEecc
Q 010324 440 REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN--LLATYGEDCTMKLWK 512 (513)
Q Consensus 440 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~s~~~dg~i~iWd 512 (513)
|...+.+++|+|++.+|++|+.||.|++||..+++++..+..|...+.+++|+|++. ++++|++|| +.+|+
T Consensus 227 -h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~ 299 (304)
T 2ynn_A 227 -HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLS 299 (304)
T ss_dssp -CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEE
T ss_pred -CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEE
Confidence 456799999999999999999999999999999999999999999999999999875 588888776 44543
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.7e-46 Score=352.24 Aligned_cols=290 Identities=18% Similarity=0.261 Sum_probs=239.6
Q ss_pred ccccCceeEEEECCCCCEEEEEec------CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEe
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSF------DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS 283 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~------dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 283 (513)
..|...|++++|||||++||+|+. |+.++ +|+..++.....+. ....+|...|.+++|+|++. +++++
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~-~~~~~~~~~~~~~~----~~~~~~~~~V~~~~~s~d~~-~l~~s 112 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIW-VFKDPEGAPNESLC----TAGVQTEAGVTDVAWVSEKG-ILVAS 112 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEE-EESSCC---CGGGC----SEEEECSSCEEEEEEETTTE-EEEEE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEE-EEECCCCCcceeEe----cccCCCCCCEEEEEEcCCCC-EEEEE
Confidence 379999999999999999999997 77886 99887766543332 13345889999999999986 55678
Q ss_pred CCCcEEEEEcCCcceeeec---ccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccC
Q 010324 284 QDGKIKVWRIRSGQCLRRL---ERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND 360 (513)
Q Consensus 284 ~dg~i~vwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 360 (513)
.||+|++||+.+++..... ..+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|++++|+|+
T Consensus 113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192 (357)
T ss_dssp TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence 8999999999988754332 1368899999999999999999999999999999999999999999999999999998
Q ss_pred CC-EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecC
Q 010324 361 GS-RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSG 438 (513)
Q Consensus 361 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~ 438 (513)
+. .+++++.||.|++||+++++....+.. ..+...+.+++|+|+++.++++++.|+.|++||++ +.....+..
T Consensus 193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~----~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~- 267 (357)
T 4g56_B 193 KDTIFLSCGEDGRILLWDTRKPKPATRIDF----CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV- 267 (357)
T ss_dssp CSSCEEEEETTSCEEECCTTSSSCBCBCCC----TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC-
T ss_pred CCceeeeeccCCceEEEECCCCceeeeeee----ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec-
Confidence 75 789999999999999999886655442 24567899999999988899999999999999998 444444433
Q ss_pred ccCCCcEEEEEECCCC-CEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcC-CCCEEEEEECCCeEEeccC
Q 010324 439 KREGGDFVAACVSPKG-EWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP-HRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 439 ~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~i~iWdp 513 (513)
+...+.+++|+|++ ++|++|+.||.|++||+.+++++..+ +|.+.|++++|+| ++.+|+|||.||+|++|+.
T Consensus 268 --~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 268 --HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp --CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred --cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 45679999999987 57999999999999999999887665 7999999999999 7999999999999999983
No 7
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-44 Score=338.53 Aligned_cols=292 Identities=32% Similarity=0.557 Sum_probs=257.6
Q ss_pred eeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
..++. +|...|++++|+|+|++||+|+.||.|+ +|+..+++... .+.+|...|.+++|+|++++|++|+.
T Consensus 16 ~~~~~-gh~~~v~~~~~s~~~~~l~s~~~dg~i~-iw~~~~~~~~~--------~~~~h~~~v~~~~~~~~~~~l~s~~~ 85 (312)
T 4ery_A 16 KFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIK-IWGAYDGKFEK--------TISGHKLGISDVAWSSDSNLLVSASD 85 (312)
T ss_dssp EEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEE-EEETTTCCEEE--------EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEc-ccCCcEEEEEECCCCCEEEEeeCCCeEE-EEeCCCcccch--------hhccCCCceEEEEEcCCCCEEEEECC
Confidence 34444 9999999999999999999999999997 99998876543 34569999999999999999999999
Q ss_pred CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEE
Q 010324 285 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRV 364 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 364 (513)
||.|++||+.+++.+..+. .|...|.+++|+|++++|++|+.||.|++||+++++.+..+..|..+|.+++|+|+++++
T Consensus 86 d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp TSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence 9999999999999988886 899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCC
Q 010324 365 VTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGG 443 (513)
Q Consensus 365 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~ 443 (513)
++++.||.|++||+++++....+.. .+...+..++|+|++ ..+++++.|+.|++||+. +.....+..+.....
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 238 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKTLID-----DDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECC-----SSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSS
T ss_pred EEEeCCCcEEEEECCCCceeeEEec-----cCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceE
Confidence 9999999999999999988776642 345678999999987 899999999999999998 555555544332222
Q ss_pred cEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEE--CCCeEEeccC
Q 010324 444 DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG--EDCTMKLWKP 513 (513)
Q Consensus 444 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~--~dg~i~iWdp 513 (513)
.+......+++.++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|+++++++++ .||+|++|+.
T Consensus 239 ~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 233344457899999999999999999999999999999999999999999999999997 6999999974
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.6e-45 Score=346.11 Aligned_cols=291 Identities=17% Similarity=0.223 Sum_probs=239.2
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccc---cccccccccCCccEEEEEEcCCCCEEEEEeCCCc
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQ---YQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 287 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 287 (513)
.|...|.+++|+|||++|++++ |++++ +||........... .........|...|.+++|+|++ .|++|+.||+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r-~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGR-CWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSS-CCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceE-EeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 5677899999999999999887 77787 88743211110000 00111122367789999999985 6889999999
Q ss_pred EEEEEcCCcceeeecc---cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCC-E
Q 010324 288 IKVWRIRSGQCLRRLE---RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS-R 363 (513)
Q Consensus 288 i~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 363 (513)
|++||+.+++...... .+|...|++++|+|+|++|++|+.||+|++||+++++.+..+.+|...|.+++|+|++. .
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 9999999987654432 37899999999999999999999999999999999999999999999999999999885 7
Q ss_pred EEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCC
Q 010324 364 VVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREG 442 (513)
Q Consensus 364 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~ 442 (513)
+++++.||+|++||+++++....+... .+...+.+++|+|.+..++++++.|+.|++||++ ++.+..+.. |.
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~---h~ 257 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCS----APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---HS 257 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC---CS
T ss_pred eeeeccccccccccccccceeeeeecc----eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC---CC
Confidence 899999999999999999888776532 3456789999999888899999999999999998 445555543 46
Q ss_pred CcEEEEEECCCC-CEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCC-EEEEEECCCeEEecc
Q 010324 443 GDFVAACVSPKG-EWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN-LLATYGEDCTMKLWK 512 (513)
Q Consensus 443 ~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iWd 512 (513)
..|.+++|+|++ ++|++|+.||.|++||+.++++. .+.+|.+.|++++|+|++. +|+|||.||+|++|+
T Consensus 258 ~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 258 QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 679999999998 58999999999999999998765 4678999999999999875 678999999999997
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-45 Score=354.26 Aligned_cols=293 Identities=19% Similarity=0.368 Sum_probs=251.4
Q ss_pred cceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE
Q 010324 203 TLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 282 (513)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 282 (513)
.+.+++. +|.+.|++++|+|+|++||+|+.||+|+ +||..+++... .+.+|...|.+++|+|+|++|++|
T Consensus 57 ~~~~~l~-gH~~~V~~~~~sp~~~~l~s~s~D~~v~-iWd~~~~~~~~--------~~~~h~~~v~~~~~s~~g~~las~ 126 (380)
T 3iz6_a 57 VCCRTLQ-GHSGKVYSLDWTPEKNWIVSASQDGRLI-VWNALTSQKTH--------AIKLHCPWVMECAFAPNGQSVACG 126 (380)
T ss_dssp EEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEE-EEETTTTEEEE--------EEECCCTTCCCCEECTTSSEEEEC
T ss_pred EEeeccc-ccccEEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCccce--------EEecCCCCEEEEEECCCCCEEEEe
Confidence 3445665 9999999999999999999999999997 99998876554 344599999999999999999999
Q ss_pred eCCCcEEEEEcCCcc-------eeeecccccccCeEEEEEccC-CCEEEEeeCCCcEEEEecCCCceeeEe-----cccc
Q 010324 283 SQDGKIKVWRIRSGQ-------CLRRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEF-----RGHS 349 (513)
Q Consensus 283 ~~dg~i~vwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~ 349 (513)
+.|+.+++||+.+.. ....+ .+|...|.++.|+|+ +..|++|+.|++|++||+++++.+..+ .+|.
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~ 205 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVL-TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT 205 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred eCCCcEEEEECCCCccccCCccceeec-cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence 999999999987532 22334 389999999999996 457999999999999999999988777 5788
Q ss_pred cceeEEEEcc-CCCEEEEEeCCCcEEEEeCCC-CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEc
Q 010324 350 SYVNDAIFTN-DGSRVVTASSDCTVKVWDLKS-TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL 427 (513)
Q Consensus 350 ~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~ 427 (513)
..|.+++|++ +++++++|+.||.|++||++. +..+..+. +|...|.+++|+|++ ..+++++.|+.|++||+
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~------~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~ 278 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH------GHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDM 278 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC------CCSSCCCEEEECTTS-SEEEEECSSSCEEEEET
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC------CcCCCeEEEEEecCC-CeEEEEcCCCeEEEEEC
Confidence 8999999987 889999999999999999984 45555554 688899999999987 89999999999999999
Q ss_pred c-CeEEEEeecCcc----CCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEee----ecccCCeEEEEEcCCCCE
Q 010324 428 Q-GQVVKSFSSGKR----EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM----KVHEKDVIGVTHHPHRNL 498 (513)
Q Consensus 428 ~-~~~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~~~~~p~~~~ 498 (513)
+ +..+..+..... +...+.+++|+|+|+++++|+.||.|++||..+++.+..+ .+|.+.|++++|+|++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 358 (380)
T 3iz6_a 279 RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA 358 (380)
T ss_dssp TTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred CCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE
Confidence 8 455555443221 1234789999999999999999999999999998887766 689999999999999999
Q ss_pred EEEEECCCeEEeccC
Q 010324 499 LATYGEDCTMKLWKP 513 (513)
Q Consensus 499 l~s~~~dg~i~iWdp 513 (513)
|++||.||+|+||+.
T Consensus 359 l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 359 LCTGSWDKNLKIWAF 373 (380)
T ss_dssp EEEECTTSCEEEEEC
T ss_pred EEEeeCCCCEEEEec
Confidence 999999999999984
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-44 Score=341.35 Aligned_cols=293 Identities=20% Similarity=0.320 Sum_probs=244.4
Q ss_pred ceeeeeccccC-ceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE
Q 010324 204 LSHTIKFGTKS-HAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 282 (513)
Q Consensus 204 ~~~~~~~~h~~-~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 282 (513)
+.++++ +|.. .|++++|+|+|++||+|+.|++|+ +||+.++...... ....+|...|.+++|+|++++|++|
T Consensus 7 ~~~~~~-~h~~~~v~~l~~sp~g~~las~~~D~~i~-iw~~~~~~~~~~~-----~~~~~h~~~v~~~~~sp~g~~l~s~ 79 (345)
T 3fm0_A 7 LLGRVP-AHPDSRCWFLAWNPAGTLLASCGGDRRIR-IWGTEGDSWICKS-----VLSEGHQRTVRKVAWSPCGNYLASA 79 (345)
T ss_dssp EEEEEC-CSTTSCEEEEEECTTSSCEEEEETTSCEE-EEEEETTEEEEEE-----EECSSCSSCEEEEEECTTSSEEEEE
T ss_pred Eeeeec-CCCCCcEEEEEECCCCCEEEEEcCCCeEE-EEEcCCCcceeee-----eeccccCCcEEEEEECCCCCEEEEE
Confidence 445565 7776 999999999999999999999997 9999876532211 1234699999999999999999999
Q ss_pred eCCCcEEEEEcCCcc--eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc---eeeEecccccceeEEEE
Q 010324 283 SQDGKIKVWRIRSGQ--CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK---LLKEFRGHSSYVNDAIF 357 (513)
Q Consensus 283 ~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~ 357 (513)
+.|+.|++||+.++. ++..+. +|...|.+++|+|++++|++|+.|+.|++||++++. .+..+.+|...|.+++|
T Consensus 80 s~D~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 80 SFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW 158 (345)
T ss_dssp ETTSCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred ECCCcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence 999999999988764 455665 899999999999999999999999999999998763 45677889999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCcee--EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC------
Q 010324 358 TNDGSRVVTASSDCTVKVWDLKSTDCL--QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG------ 429 (513)
Q Consensus 358 ~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~------ 429 (513)
+|++++|++++.|+.|++||.+++... .++. +|...|.+++|+|++ .++++++.|+.|++|+...
T Consensus 159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~------~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLE------GHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp CSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC------CCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTC
T ss_pred CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec------CCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCcc
Confidence 999999999999999999999877533 3333 678899999999987 8999999999999999631
Q ss_pred ----------eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce---------eeEeeecccCCeEEE
Q 010324 430 ----------QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK---------LEHLMKVHEKDVIGV 490 (513)
Q Consensus 430 ----------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~~ 490 (513)
..+..+. ..+...+.+++|+|++..+++++.|+.|++|+...+. ......+|.+.|+++
T Consensus 232 ~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 309 (345)
T 3fm0_A 232 VACSGSDPSWKCICTLS--GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309 (345)
T ss_dssp CCCC---CEEEEEEEEC--SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred ceeeccCCccceeEEec--CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence 1111111 1256679999999999999999999999999987542 112345799999999
Q ss_pred EEcCCC-CEEEEEECCCeEEeccC
Q 010324 491 THHPHR-NLLATYGEDCTMKLWKP 513 (513)
Q Consensus 491 ~~~p~~-~~l~s~~~dg~i~iWdp 513 (513)
+|+|++ .+|||||.||+|++|+.
T Consensus 310 ~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 310 AWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp EECSSSTTEEEEEETTSCEEEEEE
T ss_pred EEeCCCceEEEEcCCCCcEEEEEe
Confidence 999987 59999999999999983
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-43 Score=331.77 Aligned_cols=289 Identities=20% Similarity=0.348 Sum_probs=249.9
Q ss_pred eeeeccccCceeEEEECCCC-CEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 206 HTIKFGTKSHAECARFSPDG-QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~g-~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
.++. +|.+.|++++|+|++ ++|++|+.|++|+ +|++....... ..+...+.+|...|.+++|+|++++|++|+.
T Consensus 11 ~~l~-gH~~~V~~l~~~~~~~~~l~s~s~D~~v~-~W~~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 11 GTLE-GHNGWVTSLATSAGQPNLLLSASRDKTLI-SWKLTGDDQKF---GVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEE-EEEEEEETTEE---EEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEc-cccceEEEEEccCCCccEEEEecCCccEE-EecCCCCCccc---cccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 3454 999999999999965 8999999999997 99987543211 1233467789999999999999999999999
Q ss_pred CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccC----
Q 010324 285 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND---- 360 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---- 360 (513)
|++|++||+.+++.+..+. +|...|.+++|+|++.+|++|+.|++|++||++ ++.+..+.+|...|.++.|+|.
T Consensus 86 D~~v~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp TSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC----
T ss_pred CCEEEEEECCCCCeeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC
Confidence 9999999999999988887 899999999999999999999999999999995 6677888899999999999985
Q ss_pred --CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeec
Q 010324 361 --GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSS 437 (513)
Q Consensus 361 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~ 437 (513)
+..+++++.|+.|++||+++.+....+. +|...|.+++|+|++ .++++++.|+.|++||+. +..+..+..
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~------~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 236 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFI------GHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLSA 236 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEEC------CCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheeec------CCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 4489999999999999999988777665 678899999999987 899999999999999998 444444442
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeee--------cccCCeEEEEEcCCCCEEEEEECCCeEE
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK--------VHEKDVIGVTHHPHRNLLATYGEDCTMK 509 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~~~~~p~~~~l~s~~~dg~i~ 509 (513)
...+.+++|+|++.++++++. +.+++|++..+..+..+. .|...+.+++|+|+|++|++|+.||+|+
T Consensus 237 ----~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~ 311 (319)
T 3frx_A 237 ----QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311 (319)
T ss_dssp ----CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ----CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence 356999999999999998875 459999999887766553 3456799999999999999999999999
Q ss_pred eccC
Q 010324 510 LWKP 513 (513)
Q Consensus 510 iWdp 513 (513)
|||.
T Consensus 312 vWd~ 315 (319)
T 3frx_A 312 VWQV 315 (319)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9983
No 12
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-43 Score=341.23 Aligned_cols=298 Identities=23% Similarity=0.356 Sum_probs=249.0
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEecccccccccccccccc----------ccccCCccEEEEEEcCCCCEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADE----------TFMMHDETVLCIEFSRDSEMLA 280 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~----------~~~~h~~~v~~l~~~~~~~~l~ 280 (513)
+|.+.|.|++|+|||++||+|+ ++.++ +|++.+++....+...... ....+...|.+++|+|+|++|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~-i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQ-VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEE-EEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEE-EEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 7999999999999999999987 67896 9999988765544321100 0012334599999999999999
Q ss_pred EEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEcc-
Q 010324 281 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN- 359 (513)
Q Consensus 281 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~- 359 (513)
+|+.|+.|++||+.+++.+..+. +|...|.+++|+|++.+|++++.|++|++||+++++....+. +...+.+++|+|
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~ 217 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPG 217 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECST
T ss_pred EEcCCCeEEEEECCCCcEEEEEc-cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECC
Confidence 99999999999999999888886 899999999999999999999999999999999998877776 456799999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeEeecCCC-CCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEE------
Q 010324 360 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP-PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV------ 432 (513)
Q Consensus 360 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~------ 432 (513)
+++++++++.||.|++||++++..+..+.... ...+|...|.+++|+|++ ..+++++.|+.|++||++....
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC-----------
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccC
Confidence 89999999999999999999998877664322 224688899999999987 8999999999999999873211
Q ss_pred ----EEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcC------CCCEEEEE
Q 010324 433 ----KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP------HRNLLATY 502 (513)
Q Consensus 433 ----~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p------~~~~l~s~ 502 (513)
........|...+.+++++|++.+|++|+.||.|++||..+++++..+.+|.+.|.+++|+| ++++|++|
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEE
Confidence 00111123556799999999999999999999999999999999999999999999999986 67899999
Q ss_pred ECCCeEEeccC
Q 010324 503 GEDCTMKLWKP 513 (513)
Q Consensus 503 ~~dg~i~iWdp 513 (513)
+.||+|+||+.
T Consensus 377 s~Dg~i~iW~~ 387 (393)
T 1erj_A 377 SGDCKARIWKY 387 (393)
T ss_dssp ETTSEEEEEEE
T ss_pred CCCCcEEECcc
Confidence 99999999973
No 13
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-43 Score=329.99 Aligned_cols=292 Identities=19% Similarity=0.272 Sum_probs=232.9
Q ss_pred ceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEecccccccccccccccccc-c-cCCccEEEEEEcCCCCEEEE
Q 010324 204 LSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETF-M-MHDETVLCIEFSRDSEMLAS 281 (513)
Q Consensus 204 ~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~-~-~h~~~v~~l~~~~~~~~l~s 281 (513)
+.+++. +|.+.|++++|+|+ +||+|+.|++|+ +||+..+.... ...+ . +|...|.+++|+|++++|++
T Consensus 6 ~~~~~~-~h~~~v~~~~~s~~--~las~~~D~~i~-lw~~~~~~~~~------~~~~~~~~h~~~v~~v~~sp~~~~las 75 (330)
T 2hes_X 6 LIKSLK-LYKEKIWSFDFSQG--ILATGSTDRKIK-LVSVKYDDFTL------IDVLDETAHKKAIRSVAWRPHTSLLAA 75 (330)
T ss_dssp EEEEEE-CCSSCEEEEEEETT--EEEEEESSSCEE-EEECSSSCCEE------EEEECTTCCCSCEEEEEECTTSSEEEE
T ss_pred cceeec-cCCCceeeeccCCC--EEEEEcCCCEEE-EEEecCCCeEE------EEEEecCCccCCEEEEEECCCCCEEEE
Confidence 445665 99999999999998 999999999997 99998653211 1122 2 39999999999999999999
Q ss_pred EeCCCcEEEEEcCC-------cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC----ceeeEeccccc
Q 010324 282 GSQDGKIKVWRIRS-------GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG----KLLKEFRGHSS 350 (513)
Q Consensus 282 ~~~dg~i~vwd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~ 350 (513)
|+.|++|++||+.. .+.+..+. +|...|.+++|+|++++|++|+.|++|++||++.. +.+..+.+|..
T Consensus 76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~ 154 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154 (330)
T ss_dssp EETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred EeCCCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence 99999999999853 23455555 89999999999999999999999999999999432 45677889999
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCCC--ceeEeecCCCCCCCCCceeeEEEecCCC-CCeEEEEcCCCcEEEEEc
Q 010324 351 YVNDAIFTNDGSRVVTASSDCTVKVWDLKST--DCLQTFKPPPPLRGGDASVNSVHLFPKN-PDHIVVCNKTSSIYIMTL 427 (513)
Q Consensus 351 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~~~~i~i~d~ 427 (513)
.|.+++|+|++.+|++++.|++|++||..++ +++..+. +|...|.++.|+|++ ...+++++.|+.|++|++
T Consensus 155 ~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 155 DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN------GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC------CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc------CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 9999999999999999999999999998766 4455554 678899999999984 367999999999999998
Q ss_pred cCe------EEEEee-cCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce--eeE-eeecccC-CeEEEEEcC--
Q 010324 428 QGQ------VVKSFS-SGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK--LEH-LMKVHEK-DVIGVTHHP-- 494 (513)
Q Consensus 428 ~~~------~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~--~~~-~~~~h~~-~v~~~~~~p-- 494 (513)
... ...... ....+...+.+++|++++ ++++++.||.|++||..+++ ... ...+|.. .|++++|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~ 307 (330)
T 2hes_X 229 MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELN 307 (330)
T ss_dssp EEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC---
T ss_pred cCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCC
Confidence 742 111111 112256789999999765 79999999999999998874 232 3457877 899999999
Q ss_pred CCCEEEEEECCCeEEeccC
Q 010324 495 HRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 495 ~~~~l~s~~~dg~i~iWdp 513 (513)
++++|++|+.||+|+|||.
T Consensus 308 ~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 308 GKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp --CCEEEEETTSEEEEEEC
T ss_pred CceEEEEecCCCcEEEEEe
Confidence 6899999999999999984
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.4e-43 Score=358.79 Aligned_cols=300 Identities=23% Similarity=0.319 Sum_probs=249.9
Q ss_pred ccceeeeeccccCceeEEEECCCCC-EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEE
Q 010324 202 TTLSHTIKFGTKSHAECARFSPDGQ-FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280 (513)
Q Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~g~-~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 280 (513)
......+. +|...|++++|+|++. .|++|+.|++|+ +||..+++... .+.+|...|.+++|+|+|++|+
T Consensus 137 ~~~~~~l~-gh~~~v~~v~f~p~~~~~l~s~s~D~~v~-lwd~~~~~~~~--------~l~~H~~~V~~v~fspdg~~la 206 (611)
T 1nr0_A 137 GTSNGNLT-GQARAMNSVDFKPSRPFRIISGSDDNTVA-IFEGPPFKFKS--------TFGEHTKFVHSVRYNPDGSLFA 206 (611)
T ss_dssp CCBCBCCC-CCSSCEEEEEECSSSSCEEEEEETTSCEE-EEETTTBEEEE--------EECCCSSCEEEEEECTTSSEEE
T ss_pred CCCcceec-CCCCCceEEEECCCCCeEEEEEeCCCeEE-EEECCCCeEee--------eeccccCceEEEEECCCCCEEE
Confidence 33445554 8999999999999987 699999999997 99987665432 4567999999999999999999
Q ss_pred EEeCCCcEEEEEcCCcceeeeccc------ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeE----------
Q 010324 281 SGSQDGKIKVWRIRSGQCLRRLER------AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE---------- 344 (513)
Q Consensus 281 s~~~dg~i~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------- 344 (513)
+|+.|++|++||+.+++.+..+.. +|...|.+++|+|++++|++++.|++|++||+++++.+..
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~ 286 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence 999999999999999988877743 6899999999999999999999999999999988765433
Q ss_pred ---------------------------------ecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCC
Q 010324 345 ---------------------------------FRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 391 (513)
Q Consensus 345 ---------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 391 (513)
+.+|...|.+++|+|+|++|++++.|++|++||+.++.....+....
T Consensus 287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h 366 (611)
T 1nr0_A 287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH 366 (611)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSC
T ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCC
Confidence 34688899999999999999999999999999998876544321000
Q ss_pred C------------------------------------------C-----------C-----------------------C
Q 010324 392 P------------------------------------------L-----------R-----------------------G 395 (513)
Q Consensus 392 ~------------------------------------------~-----------~-----------------------~ 395 (513)
. . . .
T Consensus 367 ~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~ 446 (611)
T 1nr0_A 367 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP 446 (611)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEE
T ss_pred cceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeee
Confidence 0 0 0 0
Q ss_pred CCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC-c
Q 010324 396 GDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS-G 474 (513)
Q Consensus 396 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~ 474 (513)
+...+.+++++|++ .++++++.|+.|++||+.+........ ..+...+.+++|+|+|++|++++.|+.|++|++.+ +
T Consensus 447 ~~~~v~~va~spdg-~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~ 524 (611)
T 1nr0_A 447 ISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF 524 (611)
T ss_dssp CSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred cCCCceEEEEeCCC-CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC
Confidence 12346788999987 899999999999999998654433222 34667899999999999999999999999999987 6
Q ss_pred eeeEe--eecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 475 KLEHL--MKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 475 ~~~~~--~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
++... +.+|...|++++|+|++++|++|+.|++|++||.
T Consensus 525 ~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 525 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 65543 3459999999999999999999999999999984
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.7e-43 Score=330.65 Aligned_cols=290 Identities=18% Similarity=0.272 Sum_probs=241.3
Q ss_pred eeeeeccccCceeEEEE-----CC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCE
Q 010324 205 SHTIKFGTKSHAECARF-----SP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM 278 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~-----s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 278 (513)
...+. +|.+.|++++| ++ ++++||+|+.|++|+ +||+.+++..... ..+...+.+|...|.+++|+|++.+
T Consensus 14 ~~~l~-gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~-iWd~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 14 RGILE-GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVM-IWKLYEEEQNGYF-GIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEE-CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEE-EEEECSSCCSSBS-EEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeec-cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEE-EEECCcCCccccc-ccccchhccCCCceEEEEECCCCCE
Confidence 34555 99999999999 77 999999999999997 9998765432111 1233467789999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEec---ccccceeEE
Q 010324 279 LASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR---GHSSYVNDA 355 (513)
Q Consensus 279 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~ 355 (513)
+++|+.|++|++||+.+++.+..+. +|...|.+++|+|++++|++++.|+.|++||+.. ....... .|...|.++
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCV 168 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeee
Confidence 9999999999999999999988886 8999999999999999999999999999999974 3333333 688899999
Q ss_pred EEccCC----------CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEE
Q 010324 356 IFTNDG----------SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM 425 (513)
Q Consensus 356 ~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~ 425 (513)
+|+|++ .++++++.||.|++||. .......+. +|...|.+++|+|++ .++++++.|+.|++|
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~------~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK------AHESNVNHLSISPNG-KYIATGGKDKKLLIW 240 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE------CCSSCEEEEEECTTS-SEEEEEETTCEEEEE
T ss_pred eeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc------CccccceEEEECCCC-CEEEEEcCCCeEEEE
Confidence 999987 78999999999999994 445555544 577899999999987 899999999999999
Q ss_pred Ecc-C-eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeE--eee-----------cccCCeEEE
Q 010324 426 TLQ-G-QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEH--LMK-----------VHEKDVIGV 490 (513)
Q Consensus 426 d~~-~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~-----------~h~~~v~~~ 490 (513)
|+. . .....+. +...+.+++|+|++.++++| .|+.|++||+.+++... .+. +|...|+++
T Consensus 241 d~~~~~~~~~~~~----~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 315 (343)
T 2xzm_R 241 DILNLTYPQREFD----AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL 315 (343)
T ss_dssp ESSCCSSCSEEEE----CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE
T ss_pred ECCCCcccceeec----CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE
Confidence 994 2 2222222 23459999999999988755 58889999998876543 333 678889999
Q ss_pred EEcCCCCEEEEEECCCeEEecc
Q 010324 491 THHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 491 ~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+|+|++++|++|+.||+|++|+
T Consensus 316 ~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 316 AWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp EECSSSCCEEEEETTSEEEEEE
T ss_pred EECCCCCeEEEecCCceEEEEE
Confidence 9999999999999999999997
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.8e-42 Score=350.36 Aligned_cols=307 Identities=16% Similarity=0.226 Sum_probs=260.8
Q ss_pred cccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEE
Q 010324 193 KQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF 272 (513)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 272 (513)
...+|+.........+. +|...|++++|+|+|++||+|+.||+|+ +||+.+++... ...+.+|...|.+++|
T Consensus 40 ~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~lasg~~d~~v~-lWd~~~~~~~~------~~~~~~~~~~v~~v~f 111 (611)
T 1nr0_A 40 SVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVR-IWDTTQTTHIL------KTTIPVFSGPVKDISW 111 (611)
T ss_dssp EEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEE-EEESSSTTCCE------EEEEECSSSCEEEEEE
T ss_pred EEEEecCCCcccCeEec-CCCCceEEEEECCCCcEEEEEeCCCCEE-EeECCCCccee------eEeecccCCceEEEEE
Confidence 33456655555556665 9999999999999999999999999997 99987654321 1245569999999999
Q ss_pred cCCCCEEEEEeCC----CcEEEEEcCCcceeeecccccccCeEEEEEccCCC-EEEEeeCCCcEEEEecCCCceeeEecc
Q 010324 273 SRDSEMLASGSQD----GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS-QILSTSFDSTARIHGLKSGKLLKEFRG 347 (513)
Q Consensus 273 ~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 347 (513)
+|+++.|++++.+ +.|++|| ++.....+. +|...|.+++|+|++. .|++|+.|++|++||..+++....+.+
T Consensus 112 s~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~-gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~ 188 (611)
T 1nr0_A 112 DSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLT-GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 188 (611)
T ss_dssp CTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCC-CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC
T ss_pred CCCCCEEEEEECCCCceeEEEEee--CCCCcceec-CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc
Confidence 9999999999865 3677777 566666775 8999999999999987 599999999999999999999999999
Q ss_pred cccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecC-CCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEE
Q 010324 348 HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP-PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT 426 (513)
Q Consensus 348 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d 426 (513)
|...|.+++|+|+|++|++++.|++|++||+.+++....+.. .....+|...|.+++|+|++ ..+++++.|+.|++||
T Consensus 189 H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd 267 (611)
T 1nr0_A 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWN 267 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred ccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEe
Confidence 999999999999999999999999999999999988877632 22233688999999999987 8999999999999999
Q ss_pred cc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECC
Q 010324 427 LQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 505 (513)
Q Consensus 427 ~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d 505 (513)
+. +.....+............+.| ++..+++++.||.+++||..+++....+.+|...|++++|+|++++|++++.|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D 345 (611)
T 1nr0_A 268 VATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE 345 (611)
T ss_dssp TTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 98 5666666544333444556666 67889999999999999999999888899999999999999999999999999
Q ss_pred CeEEeccC
Q 010324 506 CTMKLWKP 513 (513)
Q Consensus 506 g~i~iWdp 513 (513)
|+|++||.
T Consensus 346 ~~v~~Wd~ 353 (611)
T 1nr0_A 346 GHINSWDI 353 (611)
T ss_dssp SCEEEEET
T ss_pred CcEEEEEC
Confidence 99999984
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-41 Score=345.99 Aligned_cols=285 Identities=31% Similarity=0.516 Sum_probs=255.3
Q ss_pred ccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEE
Q 010324 202 TTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 281 (513)
Q Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 281 (513)
......+. +|...|.+++|+|++++|++++.||.++ +||...... ..+.+|...|.+++|+|++++|++
T Consensus 293 ~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~~~d~~i~-~w~~~~~~~---------~~~~~~~~~v~~~~~s~~g~~l~~ 361 (577)
T 2ymu_A 293 GQLLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVK-LWNRNGQHL---------QTLTGHSSSVWGVAFSPDGQTIAS 361 (577)
T ss_dssp SCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEE-EEETTSCEE---------EEECCCSSCEEEEEECTTSSEEEE
T ss_pred CcEEEEEe-cCCCCeEEEEECCCCCEEEEEeCCCeEE-EEeCCCCee---------EEEeCCCCCEEEEEECCCCCEEEE
Confidence 34444554 8999999999999999999999999997 999765432 234569999999999999999999
Q ss_pred EeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCC
Q 010324 282 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG 361 (513)
Q Consensus 282 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 361 (513)
|+.||.|++||. +++.+..+. .|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++
T Consensus 362 ~~~dg~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~ 438 (577)
T 2ymu_A 362 ASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDD 438 (577)
T ss_dssp EETTSEEEEEET-TCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTS
T ss_pred EeCCCEEEEEcC-CCCEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCC
Confidence 999999999994 567777776 79999999999999999999999999999995 678888999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccC
Q 010324 362 SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE 441 (513)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 441 (513)
++|++++.|+.|++||. +++....+. +|...+.+++|+|++ .++++++.|+.|++||..++.+..+.. |
T Consensus 439 ~~l~~~~~d~~v~~w~~-~~~~~~~~~------~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~~~~~~~~~~~---h 507 (577)
T 2ymu_A 439 QTIASASDDKTVKLWNR-NGQLLQTLT------GHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTLTG---H 507 (577)
T ss_dssp SEEEEEETTSEEEEEET-TSCEEEEEE------CCSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSCEEEEEEC---C
T ss_pred CEEEEEcCCCEEEEEEC-CCCEEEEEc------CCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCCCCEEEEEeC---C
Confidence 99999999999999996 456666655 567899999999987 899999999999999998888777764 4
Q ss_pred CCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 442 GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 442 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
...+++++|+|+|++|++++.||.|++||. +++++..+.+|.+.|++++|+||+++|+|++.||+|++||
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 567999999999999999999999999995 6888999999999999999999999999999999999997
No 18
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-40 Score=314.99 Aligned_cols=285 Identities=16% Similarity=0.262 Sum_probs=251.1
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 289 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 289 (513)
.+|...|++++|+|++++|++++ ||.|+ +||+.++.....+.. ....+|...|.+++|+|++++|++++.||.|+
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~-iw~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVK-VWDISHPGNKSPVSQ---LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEE-EEETTSTTCCSCSEE---EECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEE-EEECCCCCceeeeec---ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 48999999999999999999999 99997 999988764433221 11225899999999999999999999999999
Q ss_pred EEEcCCcc--eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEE
Q 010324 290 VWRIRSGQ--CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 290 vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 367 (513)
+||+.+++ ....+. .|...|.+++|+|+++++++++.||.|++||+++++.+..+..|...|.+++|+|++++++++
T Consensus 123 ~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 201 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201 (337)
T ss_dssp EEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEECCCCCcceeeecc-cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEE
Confidence 99999877 444454 788899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEE
Q 010324 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVA 447 (513)
Q Consensus 368 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 447 (513)
+.||.|++||+++++....+. +...+.+++|+|++ ..+++++.++.|++||+.......+. .+...+.+
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~-------~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~~~~~---~~~~~v~~ 270 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHD-------FTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKYQLH---LHESCVLS 270 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-------CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCEEEEC---CCSSCEEE
T ss_pred ecCCcEEEEECCCCceEeeec-------CCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCeEEEc---CCccceeE
Confidence 999999999999998877764 45679999999987 89999999999999999865544443 34677999
Q ss_pred EEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 448 ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 448 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
++|+|+++++++++.||.|++||+.+++.+... .|...|++++|+|++++|++++.||.|++|+
T Consensus 271 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 999999999999999999999999999887544 5888999999999999999999999999997
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.9e-42 Score=317.21 Aligned_cols=248 Identities=20% Similarity=0.332 Sum_probs=222.9
Q ss_pred ccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEec
Q 010324 257 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 336 (513)
Q Consensus 257 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 336 (513)
..++.+|.+.|.+++|+|++++|++|+.||.|++||+.++..+..+. .|..+|.+++|+|++++|++|+.|+.|++||+
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 44677899999999999999999999999999999999999888886 78999999999999999999999999999999
Q ss_pred CCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCcee-EeecCCCCCCCCCceeeEEEecCCCCCeEEE
Q 010324 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCL-QTFKPPPPLRGGDASVNSVHLFPKNPDHIVV 415 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 415 (513)
.+++.+..+.+|...|.+++|+|+++++++|+.||+|++||++++... ..+. +|...|.+++|+|.++..+++
T Consensus 85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~------~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE------GHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC------CCCSCEEEEEECTTCTTEEEE
T ss_pred CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc------ccCCcEEEEEECCCCCCEEEE
Confidence 999999999999999999999999999999999999999999887443 3343 678899999999977799999
Q ss_pred EcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECC--CCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEE
Q 010324 416 CNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSP--KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTH 492 (513)
Q Consensus 416 ~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 492 (513)
++.|+.|++||+. +.....+... +...+..++++| ++.++++|+.||.|++||+.+++++..+.+|...|.+++|
T Consensus 159 gs~D~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~ 236 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (304)
T ss_dssp EETTSEEEEEETTCSSCSEEEECC--CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EeCCCeEEEEECCCCCccceeccC--CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEE
Confidence 9999999999997 3333333322 345577888865 7889999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCeEEeccC
Q 010324 493 HPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 493 ~p~~~~l~s~~~dg~i~iWdp 513 (513)
+|++++|++|+.||+|++||+
T Consensus 237 ~p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 237 HPTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp CSSSSEEEEEETTSCEEEEET
T ss_pred CCCCCEEEEEcCCCeEEEEEC
Confidence 999999999999999999984
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-40 Score=318.76 Aligned_cols=281 Identities=19% Similarity=0.313 Sum_probs=251.1
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
+|.+.|++++|+|+|++||+|+.||.|+ +||+.+++... .+.+|...|.+++|+|++++|++++.||.|++
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~-vwd~~~~~~~~--------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSAS-VWYSLNGERLG--------TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEE-EEETTTCCEEE--------EECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEE-EEeCCCchhhh--------hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 9999999999999999999999999996 99998876554 34469999999999999999999999999999
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC-----CcEEEEecCCCc-----------eeeEeccccc--ce
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD-----STARIHGLKSGK-----------LLKEFRGHSS--YV 352 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-----------~~~~~~~~~~--~v 352 (513)
||+.+++.+..+. +...+.+++|+|+++++++++.+ |.|.+||+..+. ....+..|.. .+
T Consensus 101 wd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 101 WDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp EETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred EECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 9999999888885 78899999999999999999999 999999997664 3334445555 89
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEeCCC-CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-Ce
Q 010324 353 NDAIFTNDGSRVVTASSDCTVKVWDLKS-TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQ 430 (513)
Q Consensus 353 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~ 430 (513)
.+++|+|+++++++++.||.|++||+++ +.....+. .+...+.+++|+|++ ..+++++.++.|++||+. +.
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID------LHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE------CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe------cCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCc
Confidence 9999999999999999999999999998 66666665 467789999999987 899999999999999998 44
Q ss_pred EEEEeecCccCCCcEEEEEECCCCCEEEEEecCc--------------eEEEEECCCceeeEeeecccCCeEEEEEcCCC
Q 010324 431 VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR--------------NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR 496 (513)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~ 496 (513)
....+. +...+..++|+|+++++++++.++ .+++||..+++.+..+.+|.+.|++++|+|++
T Consensus 252 ~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 327 (369)
T 3zwl_B 252 VLKKYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG 327 (369)
T ss_dssp EEEEEE----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred eeeeec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC
Confidence 555544 356689999999999999999888 89999999999999999999999999999999
Q ss_pred CEEEEEECCCeEEeccC
Q 010324 497 NLLATYGEDCTMKLWKP 513 (513)
Q Consensus 497 ~~l~s~~~dg~i~iWdp 513 (513)
++|++++.||.|++|+.
T Consensus 328 ~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 328 TSYASGGEDGFIRLHHF 344 (369)
T ss_dssp SEEEEEETTSEEEEEEE
T ss_pred CEEEEEcCCCeEEEEEC
Confidence 99999999999999973
No 21
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.4e-40 Score=312.31 Aligned_cols=292 Identities=22% Similarity=0.352 Sum_probs=248.3
Q ss_pred ceeeeeccccCceeEEEECCC-CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE
Q 010324 204 LSHTIKFGTKSHAECARFSPD-GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 282 (513)
Q Consensus 204 ~~~~~~~~h~~~v~~~~~s~~-g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 282 (513)
+..+++ ||.+.|++++|+|+ +++||||+.||+|+ +||+.+++.... .+...+.+|...|.+++|+|++++|++|
T Consensus 30 l~~tL~-GH~~~V~~v~~sp~~~~~l~S~s~D~~i~-vWd~~~~~~~~~---~~~~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 30 LRGTLK-GHNGWVTQIATTPQFPDMILSASRDKTII-MWKLTRDETNYG---IPQRALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp EEEEEC-CCSSCEEEEEECTTCTTEEEEEETTSCEE-EEEECCSSSCSE---EEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEC-CccCCEEEEEEeCCCCCEEEEEcCCCeEE-EEECCCCCcccc---eeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 344565 99999999999997 68999999999997 999987654322 2334677899999999999999999999
Q ss_pred eCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce-eeEecccccceeEEEEccCC
Q 010324 283 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL-LKEFRGHSSYVNDAIFTNDG 361 (513)
Q Consensus 283 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~ 361 (513)
+.|+.|++|+...+....... .+...+..+.+++++..|++|+.|+.+++||+..... .....+|...+..++|++++
T Consensus 105 ~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred cccccceEEeecccceeeeec-CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 999999999999888777765 6788899999999999999999999999999876544 34456788999999998864
Q ss_pred --CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecC
Q 010324 362 --SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSG 438 (513)
Q Consensus 362 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~ 438 (513)
..+++++.|+.|++||+++++....+. +|...|.+++|+|++ .++++++.|+.|++||++ ...+..+..
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~------~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~- 255 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHI------GHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLYTLDG- 255 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEEC------CCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEEC-
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEec------CCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCceeeeecC-
Confidence 578899999999999999998887775 577899999999987 899999999999999998 444444433
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeee---------cccCCeEEEEEcCCCCEEEEEECCCeEE
Q 010324 439 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK---------VHEKDVIGVTHHPHRNLLATYGEDCTMK 509 (513)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---------~h~~~v~~~~~~p~~~~l~s~~~dg~i~ 509 (513)
...+.+++++|++.++ +++.|+.|++||+.++..+..+. +|...|++++|+|++++|++|+.||+|+
T Consensus 256 ---~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~ 331 (340)
T 4aow_A 256 ---GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331 (340)
T ss_dssp ---SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ---CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 3468999999988655 55669999999999887665543 6888999999999999999999999999
Q ss_pred eccC
Q 010324 510 LWKP 513 (513)
Q Consensus 510 iWdp 513 (513)
|||.
T Consensus 332 iW~~ 335 (340)
T 4aow_A 332 VWQV 335 (340)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9983
No 22
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3e-40 Score=342.62 Aligned_cols=289 Identities=24% Similarity=0.343 Sum_probs=245.1
Q ss_pred eeeccccCceeEEEECCC-CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC
Q 010324 207 TIKFGTKSHAECARFSPD-GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285 (513)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~-g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 285 (513)
.++ +|.+.|+|++|+|+ +++|++|+.||+|+ +|++.+..... ......+.+|...|.+++|+|++++|++|+.|
T Consensus 377 ~l~-~H~~~V~~v~~~~~~~~~l~s~s~D~~i~-~W~~~~~~~~~---~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 377 TMR-AHTDMVTAIATPIDNADIIVSASRDKSII-LWKLTKDDKAY---GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp EEE-CCSSCEEEEECCTTCCSEEEEEETTSEEE-EEECCCSTTCS---CEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred hcc-cCCceeEEEEecCCCCCEEEEEeCCCcEE-EEEccCCCccc---ccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 444 99999999999986 47999999999997 99997654321 11234567899999999999999999999999
Q ss_pred CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe---cccccceeEEEEccCC-
Q 010324 286 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDG- 361 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~- 361 (513)
|+|++||+.++.....+. +|...|.+++|+|++++|++|+.|++|++||.......... .+|...|.+++|+|++
T Consensus 452 g~v~vwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp SEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred CcEEEEECCCCcceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 999999999999888886 89999999999999999999999999999998654333222 4688889999999986
Q ss_pred -CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCc
Q 010324 362 -SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGK 439 (513)
Q Consensus 362 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~ 439 (513)
..+++++.||+|++||+++++....+. +|...|.+++|+|++ .++++++.|+.|++||+. +..+..+.
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~------~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~~--- 600 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLA------GHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYSLE--- 600 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEEC------CCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEECCB---
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEc------CCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEec---
Confidence 589999999999999999988877765 678899999999987 899999999999999998 44443332
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeeccc-------------------CCeEEEEEcCCCCEEE
Q 010324 440 REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHE-------------------KDVIGVTHHPHRNLLA 500 (513)
Q Consensus 440 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-------------------~~v~~~~~~p~~~~l~ 500 (513)
....+.+++|+|++.++++++ ++.|++||+.++..+..+..+. ..+++++|+|++++|+
T Consensus 601 -~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~ 678 (694)
T 3dm0_A 601 -ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678 (694)
T ss_dssp -CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred -CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence 245689999999999888776 5669999999998877665321 1378999999999999
Q ss_pred EEECCCeEEeccC
Q 010324 501 TYGEDCTMKLWKP 513 (513)
Q Consensus 501 s~~~dg~i~iWdp 513 (513)
+|+.||+|+||+.
T Consensus 679 sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 679 SGYTDGVIRVWGI 691 (694)
T ss_dssp EEETTSEEEEEEC
T ss_pred EEcCCCeEEEEec
Confidence 9999999999984
No 23
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3e-41 Score=322.84 Aligned_cols=301 Identities=16% Similarity=0.200 Sum_probs=249.2
Q ss_pred eeeeeccccCceeEEEECCC----CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC----C
Q 010324 205 SHTIKFGTKSHAECARFSPD----GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD----S 276 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~----g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~ 276 (513)
.+.+..+|.+.|++++|+|+ ...+++++.++.|+ +||+.+++....+... ....|...|.+++|+|+ +
T Consensus 10 ~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~-vw~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 10 VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSY---VDADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp EEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEE-EEEECGGGCEEEEEEE---ECSCTTCCEEEEEEEECTTTCC
T ss_pred EEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEE-EEEcCCCcEEEeeeec---cccCCCCcEEEEEeccCCCCCC
Confidence 34566699999999999984 55677777788996 9999987765444321 11237788999999998 6
Q ss_pred CEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCceeeEe---cccccce
Q 010324 277 EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYV 352 (513)
Q Consensus 277 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v 352 (513)
.+|++|+.||.|++||+.+++.+..+. .|...|.+++|+| ++.+|++|+.||.|++||+++++.+..+ ..|...|
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 164 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 164 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE
T ss_pred CEEEEecCCCEEEEEEchhceEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCce
Confidence 799999999999999999999988886 8999999999999 9999999999999999999999988888 6899999
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecC----------------------CCCCCCCCceeeEEEecCCCC
Q 010324 353 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP----------------------PPPLRGGDASVNSVHLFPKNP 410 (513)
Q Consensus 353 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~~~~~~~v~~~~~~~~~~ 410 (513)
.+++|+|++++|++++.||.|++||+++++....+.. ......+...+.++.|+ +
T Consensus 165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~ 241 (366)
T 3k26_A 165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---G 241 (366)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---T
T ss_pred eEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---C
Confidence 9999999999999999999999999998765433321 00112377889999998 3
Q ss_pred CeEEEEcCCCcEEEEEccCeE------------EEEeecCccCCCcEEEEEECCC--CCEEEEEecCceEEEEECCCcee
Q 010324 411 DHIVVCNKTSSIYIMTLQGQV------------VKSFSSGKREGGDFVAACVSPK--GEWIYCVGEDRNLYCFSHQSGKL 476 (513)
Q Consensus 411 ~~l~~~~~~~~i~i~d~~~~~------------~~~~~~~~~~~~~~~~~~~s~~--~~~l~~g~~dg~i~iwd~~~~~~ 476 (513)
..+++++.++.|++||+.... .........+...+.+++|+|+ +++|++|+.||.|++||+.+++.
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 799999999999999987321 1122222234556888999999 99999999999999999998764
Q ss_pred ----eEeeecc--cCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 477 ----EHLMKVH--EKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 477 ----~~~~~~h--~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
...+.+| ...|++++|+|++++|++++.||.|++||.
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 3467777 789999999999999999999999999984
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.3e-40 Score=319.48 Aligned_cols=293 Identities=17% Similarity=0.257 Sum_probs=250.1
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC----C---CEEEEE
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD----S---EMLASG 282 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~---~~l~s~ 282 (513)
.+|.+.|++++|+| ++|++|+.||.|+ +||+.+++.... ......+.+|...|.+++|+|+ + ++|+++
T Consensus 13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~-iw~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 13 KAHDADIFSVSACN--SFTVSCSGDGYLK-VWDNKLLDNENP--KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEE-EEESBCCTTCCG--GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhcCeEEEEecC--CeEEEEcCCCEEE-EEECCCcccccC--CCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 39999999999999 7999999999997 999988763221 1223455679999999999999 9 999999
Q ss_pred eCCCcEEEEEcCCcce-----eeeccccc-----ccCeEEEEEc----cCCCE-EEEeeCCCcEEEEecCC------Cce
Q 010324 283 SQDGKIKVWRIRSGQC-----LRRLERAH-----SEGVTSLVFS----RDGSQ-ILSTSFDSTARIHGLKS------GKL 341 (513)
Q Consensus 283 ~~dg~i~vwd~~~~~~-----~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~i~d~~~------~~~ 341 (513)
+.||.|++||+.+++. ...+. .| ...|.+++|+ |++++ |++++.||.|++||+++ ++.
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred cCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 9999999999998886 66665 56 5899999999 99999 99999999999999988 666
Q ss_pred ee-----Ee-------cccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCC---CceeeEEEec
Q 010324 342 LK-----EF-------RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGG---DASVNSVHLF 406 (513)
Q Consensus 342 ~~-----~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~ 406 (513)
+. .+ ..|...|.+++|+|++ ++++++.||.|++||+++++.+..+... .+| ...+.+++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ---HSMINNSNSIRSVKFS 242 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC---C---CCCCCEEEEEEC
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc---ccccccCCccceEEEC
Confidence 66 66 4478899999999999 9999999999999999999888887631 125 7789999999
Q ss_pred CCCCCeEEEEcCC---CcEEEEEcc-CeEEEEeecCc----------cCCCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 407 PKNPDHIVVCNKT---SSIYIMTLQ-GQVVKSFSSGK----------REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 407 ~~~~~~l~~~~~~---~~i~i~d~~-~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
|++ .++++++.+ +.|++||+. +..+..+.... .+...+.+++|+|++++|++++.||.|++||+.
T Consensus 243 ~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 243 PQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp SST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCC-CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 987 899999999 999999997 55555554310 046789999999999999999999999999999
Q ss_pred CceeeEeee------cc---------------cCCeEEEEEcCCC----------CEEEEEECCCeEEeccC
Q 010324 473 SGKLEHLMK------VH---------------EKDVIGVTHHPHR----------NLLATYGEDCTMKLWKP 513 (513)
Q Consensus 473 ~~~~~~~~~------~h---------------~~~v~~~~~~p~~----------~~l~s~~~dg~i~iWdp 513 (513)
+++.+..+. +| ...|++++|+|++ ++|++++.||.|++||.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 322 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred CCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 999999998 88 9999999999998 79999999999999983
No 25
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.9e-39 Score=330.02 Aligned_cols=285 Identities=31% Similarity=0.515 Sum_probs=252.7
Q ss_pred cceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE
Q 010324 203 TLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 282 (513)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 282 (513)
+....+. +|...|.+++|+|+++.|++++.|+.++ +|+... +.. ..+.+|...|.+++|+|+++.|+++
T Consensus 253 ~~~~~~~-~~~~~v~~v~~~~d~~~l~~~~~d~~i~-~w~~~~-~~~--------~~~~~h~~~v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 253 QLLQTLT-GHSSSVNGVAFRPDGQTIASASDDKTVK-LWNRNG-QLL--------QTLTGHSSSVWGVAFSPDGQTIASA 321 (577)
T ss_dssp CEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEE-EEETTS-CEE--------EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCEEE-EEeCCC-cEE--------EEEecCCCCeEEEEECCCCCEEEEE
Confidence 3444554 8999999999999999999999999997 999643 222 2455799999999999999999999
Q ss_pred eCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCC
Q 010324 283 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 283 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 362 (513)
+.|+.|++||.... .+..+. .|...+.+++|+|+++++++++.||.|++||. +++.+..+.+|...|.+++|+|+++
T Consensus 322 ~~d~~i~~w~~~~~-~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~ 398 (577)
T 2ymu_A 322 SDDKTVKLWNRNGQ-HLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ 398 (577)
T ss_dssp ETTSCEEEEETTSC-EEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSS
T ss_pred eCCCeEEEEeCCCC-eeEEEe-CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCC
Confidence 99999999997654 455565 78999999999999999999999999999995 6788889999999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCC
Q 010324 363 RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREG 442 (513)
Q Consensus 363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 442 (513)
+|++++.|+.|++||. +++....+. +|...+.+++|+|++ ..+++++.|+.|++||..++.+..+.. +.
T Consensus 399 ~l~~~~~d~~v~~~~~-~~~~~~~~~------~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~~~~~~~~~---~~ 467 (577)
T 2ymu_A 399 TIASASDDKTVKLWNR-NGQLLQTLT------GHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNGQLLQTLTG---HS 467 (577)
T ss_dssp CEEEEETTSEEEEECT-TCCEEEEEE------CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTSCEEEEEEC---CS
T ss_pred EEEEEeCCCEEEEEeC-CCCEEEEec------CCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCCCEEEEEcC---CC
Confidence 9999999999999995 456666654 577899999999987 899999999999999998887776654 45
Q ss_pred CcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 443 GDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 443 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
..+.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.||.|++||.
T Consensus 468 ~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 468 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 67999999999999999999999999995 68888999999999999999999999999999999999983
No 26
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.7e-40 Score=318.44 Aligned_cols=289 Identities=16% Similarity=0.227 Sum_probs=239.7
Q ss_pred ceeeeeccccCceeEEEECCCC-CEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEE
Q 010324 204 LSHTIKFGTKSHAECARFSPDG-QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLAS 281 (513)
Q Consensus 204 ~~~~~~~~h~~~v~~~~~s~~g-~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s 281 (513)
....+. +|...|++++|+|++ ++||+|+.||.|+ +||+.+++....+ ...+|...|.+++|+| ++++|++
T Consensus 65 ~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~------~~~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 65 LHRTAS-PFDRRVTSLEWHPTHPTTVAVGSKGGDII-LWDYDVQNKTSFI------QGMGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp EEEEEC-CCSSCEEEEEECSSCTTEEEEEEBTSCEE-EEETTSTTCEEEE------CCCSTTCBEEEEEEETTEEEEEEE
T ss_pred eEEecc-CCCCCEEEEEECCCCCCEEEEEcCCCeEE-EEeCCCcccceee------ecCCcCCceeEEEeCCCCCCEEEE
Confidence 334444 899999999999999 9999999999997 9999987654332 2235999999999999 7899999
Q ss_pred EeCCCcEEEEEcCCcceeeeccc--ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEcc
Q 010324 282 GSQDGKIKVWRIRSGQCLRRLER--AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 359 (513)
Q Consensus 282 ~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 359 (513)
++.|+.|++||+.+ ..+..+.. .+...|.+++|+|++++|++|+.||.|++||+ +++.+..+..|...|.+++|+|
T Consensus 137 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 137 SSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp EETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS
T ss_pred EeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC
Confidence 99999999999986 44444431 33478999999999999999999999999999 6888889999999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEeCCC----CceeEeecCCCCCCCCCceeeEEEecC-CCCCeEEEEcCCCcEEEEEcc-CeEE
Q 010324 360 DGS-RVVTASSDCTVKVWDLKS----TDCLQTFKPPPPLRGGDASVNSVHLFP-KNPDHIVVCNKTSSIYIMTLQ-GQVV 432 (513)
Q Consensus 360 ~~~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~~~~i~i~d~~-~~~~ 432 (513)
+++ ++++++.|+.|++||+++ +.....+ .+...+.+++|+| ++ ..+++++.|+.|++||++ +...
T Consensus 215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~ 286 (383)
T 3ei3_B 215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-------PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKP 286 (383)
T ss_dssp SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-------ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSC
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-------cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccc
Confidence 999 999999999999999998 4555544 3677999999999 55 899999999999999997 3322
Q ss_pred EEeecCc----c----------CCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeec--ccCCeEEEEEcCCC
Q 010324 433 KSFSSGK----R----------EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV--HEKDVIGVTHHPHR 496 (513)
Q Consensus 433 ~~~~~~~----~----------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~p~~ 496 (513)
..+.... . ....+..++++|+|++ +|+.||.|++||+.+++.+..+.+ |.+.+..++|+|++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g 364 (383)
T 3ei3_B 287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG 364 (383)
T ss_dssp SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS
T ss_pred cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc
Confidence 2222111 0 1134555777777776 778999999999999999999987 45778888999999
Q ss_pred CEEEEEECCCeEEeccC
Q 010324 497 NLLATYGEDCTMKLWKP 513 (513)
Q Consensus 497 ~~l~s~~~dg~i~iWdp 513 (513)
.+|++|+ ||.|+|||+
T Consensus 365 ~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 365 DVLASGM-GFNILIWNR 380 (383)
T ss_dssp SEEEEEE-TTEEEEEEC
T ss_pred cEEEEec-CCcEEEEec
Confidence 9999997 999999985
No 27
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.6e-40 Score=317.98 Aligned_cols=244 Identities=21% Similarity=0.402 Sum_probs=225.6
Q ss_pred ccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC
Q 010324 259 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 338 (513)
Q Consensus 259 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 338 (513)
.+.+|..+|++++|+|++.+|++|+.||+|++||+.+++....+. +|...|.+++|+|++++|++|+.||+|++||+.+
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 345699999999999999999999999999999999999988887 8999999999999999999999999999999999
Q ss_pred CceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC
Q 010324 339 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK 418 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 418 (513)
++.+..+.+|...|.+++|+|+++++++++.|++|++||++++.++.++. +|...+.++.++|++ ..+++++.
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~------~h~~~v~~~~~~~~g-~~l~s~s~ 254 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT------GHREWVRMVRPNQDG-TLIASCSN 254 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE------CCSSCEEEEEECTTS-SEEEEEET
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe------CCCccEEEEEECCCC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999999888876 577889999999987 89999999
Q ss_pred CCcEEEEEccC-eEEEEeecCccCCCcEEEEEECCC--------------------CCEEEEEecCceEEEEECCCceee
Q 010324 419 TSSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSPK--------------------GEWIYCVGEDRNLYCFSHQSGKLE 477 (513)
Q Consensus 419 ~~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~--------------------~~~l~~g~~dg~i~iwd~~~~~~~ 477 (513)
|+.|++||+.. .....+. .+...+.+++|+|+ |.++++|+.||.|++||+.++.++
T Consensus 255 D~~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 DQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp TSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred CCeEEEEECCCCceeeEec---CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 99999999984 4444443 34567999999996 679999999999999999999999
Q ss_pred EeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 478 HLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 478 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
..+.+|.+.|++++|+|++.+|++|+.||+|++||.
T Consensus 332 ~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 332 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 999999999999999999999999999999999984
No 28
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=315.42 Aligned_cols=294 Identities=15% Similarity=0.225 Sum_probs=241.4
Q ss_pred ceeeeeccccCceeEEEECCCCCEE-EEEec---CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC---C
Q 010324 204 LSHTIKFGTKSHAECARFSPDGQFL-VSCSF---DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD---S 276 (513)
Q Consensus 204 ~~~~~~~~h~~~v~~~~~s~~g~~l-a~g~~---dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~ 276 (513)
....+..+|...|.+++|+|++..+ ++|+. ||.|+ +||+.+++...... .+|...|.+++|+|+ +
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~-iw~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~ 80 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQ-LYEIQHGDLKLLRE-------IEKAKPIKCGTFGATSLQQ 80 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEE-EEEECSSSEEEEEE-------EEESSCEEEEECTTCCTTT
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEE-EEeCCCCcccceee-------ecccCcEEEEEEcCCCCCC
Confidence 3334444899999999999999655 56665 99996 99999876543221 248999999999998 6
Q ss_pred CEEEEEeCCCcEEEEEcCCcc-eeeecccccccCeEEEEE------ccCCCEEEEeeCCCcEEEEecCCCc-eeeEeccc
Q 010324 277 EMLASGSQDGKIKVWRIRSGQ-CLRRLERAHSEGVTSLVF------SRDGSQILSTSFDSTARIHGLKSGK-LLKEFRGH 348 (513)
Q Consensus 277 ~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~ 348 (513)
.+|++|+.||.|++||+.+++ .+..+. .|...|.+++| +|++++|++++.||.|++||+++++ .+..+..+
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 159 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV 159 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred ceEEEecCCCeEEEEeCCCCCccEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence 999999999999999999988 777776 89999999955 6899999999999999999999887 67777655
Q ss_pred cc----ceeEEE----EccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC--CCCeEEEEcC
Q 010324 349 SS----YVNDAI----FTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK--NPDHIVVCNK 418 (513)
Q Consensus 349 ~~----~v~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~ 418 (513)
.+ .+.+++ |+|+++++++++.||.|++||+++++..... .+...+.+++|+|. .+..+++++.
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET-------NIKNGVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE-------ECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec-------CCCCceEEEEcCCCCCCCCEEEEECC
Confidence 44 788888 7889999999999999999999998875543 35678999999993 3389999999
Q ss_pred CCcEEEEEccCeE-EEEee--cCccCCCcEEEEEECCCCC-EEEEEecCceEEEEECCCc-------------------e
Q 010324 419 TSSIYIMTLQGQV-VKSFS--SGKREGGDFVAACVSPKGE-WIYCVGEDRNLYCFSHQSG-------------------K 475 (513)
Q Consensus 419 ~~~i~i~d~~~~~-~~~~~--~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~-------------------~ 475 (513)
++.|++||++... ...+. ....+...+.+++|+|+++ ++++|+.||.|++||+.++ +
T Consensus 233 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~ 312 (357)
T 3i2n_A 233 EGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVS 312 (357)
T ss_dssp TTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEE
T ss_pred CCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccc
Confidence 9999999997332 11111 1123567899999999998 8999999999999999754 4
Q ss_pred eeEeeecccCCeEEEEEcCCCCEEE-EEECCCeEEeccC
Q 010324 476 LEHLMKVHEKDVIGVTHHPHRNLLA-TYGEDCTMKLWKP 513 (513)
Q Consensus 476 ~~~~~~~h~~~v~~~~~~p~~~~l~-s~~~dg~i~iWdp 513 (513)
.+..+.+|.+.|++++|+|++++|+ +++.||.|++||.
T Consensus 313 ~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 313 LLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp EEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred eeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 5677889999999999999999998 8999999999983
No 29
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-41 Score=327.11 Aligned_cols=293 Identities=16% Similarity=0.244 Sum_probs=252.3
Q ss_pred cccCceeEEEECCCCC-EEEEE----------ecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEE
Q 010324 211 GTKSHAECARFSPDGQ-FLVSC----------SFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 279 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~-~la~g----------~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 279 (513)
.+...|.+++|+|+|+ +||+| +.||.|+ +||+.++...... ....|...|.+++|+|++++|
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~-iw~~~~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l 82 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLE-LWSLLAADSEKPI------ASLQVDSKFNDLDWSHNNKII 82 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCE-EEESSSGGGCSCS------CCCCCSSCEEEEEECSSSSCE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEE-EEEccCCCCCcEE------EEEecCCceEEEEECCCCCeE
Confidence 4556789999999987 99999 8999997 9999887633111 112388999999999999999
Q ss_pred EEEeCCCcEEEEEcCC----cceeeecccccccCeEEEEEccC-CCEEEEeeCCCcEEEEecCCCc------eeeE---e
Q 010324 280 ASGSQDGKIKVWRIRS----GQCLRRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGK------LLKE---F 345 (513)
Q Consensus 280 ~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~---~ 345 (513)
++|+.||.|++||+.+ .+.+..+. .|...|.+++|+|+ +.+|++++.||.|++||+.+++ .... .
T Consensus 83 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 161 (416)
T 2pm9_A 83 AGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS 161 (416)
T ss_dssp EEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS
T ss_pred EEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc
Confidence 9999999999999987 34666665 89999999999998 8999999999999999998886 3332 3
Q ss_pred cccccceeEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC---c
Q 010324 346 RGHSSYVNDAIFTND-GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS---S 421 (513)
Q Consensus 346 ~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~---~ 421 (513)
..|...|.+++|+|+ +.++++++.||.|++||+++++....+.......++...+.+++|+|++..++++++.++ .
T Consensus 162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~ 241 (416)
T 2pm9_A 162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS 241 (416)
T ss_dssp CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence 678889999999998 789999999999999999999988888765544555789999999999878999999998 9
Q ss_pred EEEEEccC--eEEEEeecCccCCCcEEEEEECC-CCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCC-C
Q 010324 422 IYIMTLQG--QVVKSFSSGKREGGDFVAACVSP-KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR-N 497 (513)
Q Consensus 422 i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~ 497 (513)
|++||++. .....+. ..+...+.+++|+| +++++++++.||.|++||+.+++.+..+.+|.+.|++++|+|++ .
T Consensus 242 i~~~d~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 319 (416)
T 2pm9_A 242 ILIWDLRNANTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPD 319 (416)
T ss_dssp CCEEETTSTTSCSBCCC--SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTT
T ss_pred EEEEeCCCCCCCcEEee--cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCC
Confidence 99999984 2332222 13567899999999 99999999999999999999999999999999999999999998 8
Q ss_pred EEEEEECCCeEEeccC
Q 010324 498 LLATYGEDCTMKLWKP 513 (513)
Q Consensus 498 ~l~s~~~dg~i~iWdp 513 (513)
+|++++.||.|++||.
T Consensus 320 ~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 320 LFACASFDNKIEVQTL 335 (416)
T ss_dssp EEEECCSSSEEEEEES
T ss_pred EEEEEecCCcEEEEEc
Confidence 9999999999999983
No 30
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-39 Score=311.39 Aligned_cols=284 Identities=14% Similarity=0.174 Sum_probs=240.0
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
.|.+.|++++|+|+|++||+|+.||.|+ +||+.+++. .....+.+|...|.+++|+|++++|++++.||.|++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~-i~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVH-IYEKSGNKW------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 78 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEE-EEEEETTEE------EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEE-EEeCCCCcE------EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence 5889999999999999999999999997 999987751 122345569999999999999999999999999999
Q ss_pred EEcCCcceeeecc-cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce---e-eEecccccceeEEEEccCCCEEE
Q 010324 291 WRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL---L-KEFRGHSSYVNDAIFTNDGSRVV 365 (513)
Q Consensus 291 wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~-~~~~~~~~~v~~~~~~~~~~~l~ 365 (513)
||+.+++...... ..|...|.+++|+|++++|++++.||.|++||++.+.. . .....|...|.+++|+|++++++
T Consensus 79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 79 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred EECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 9998887544432 36889999999999999999999999999999988763 2 33356788999999999999999
Q ss_pred EEeCCCcEEEEeCC------------------CCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEc
Q 010324 366 TASSDCTVKVWDLK------------------STDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL 427 (513)
Q Consensus 366 ~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~ 427 (513)
+++.||.|++||++ .++....+. .+...+.+++|+|++ ..+++++.|+.|++||+
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS------SSCGWVHGVCFSANG-SRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC------CCSSCEEEEEECSSS-SEEEEEETTTEEEEEEG
T ss_pred EEcCCCCEEEEEcccccccccccccccccccchhhheEecC------CCCCeEEEEEECCCC-CEEEEEeCCCEEEEEEC
Confidence 99999999999964 455555554 567899999999987 89999999999999999
Q ss_pred c-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC--cee----------------------------
Q 010324 428 Q-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS--GKL---------------------------- 476 (513)
Q Consensus 428 ~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~---------------------------- 476 (513)
+ +..+..+.. +...+.+++|+|++.++++| .||.|++|++.+ ++.
T Consensus 232 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (372)
T 1k8k_C 232 DKKMAVATLAS---ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 307 (372)
T ss_dssp GGTTEEEEEEC---SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred CCCceeEEEcc---CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccc
Confidence 7 556655553 35679999999999988888 899999999987 421
Q ss_pred ----e------Eee-ecccCCeEEEEEc-CCC---CEEEEEECCCeEEecc
Q 010324 477 ----E------HLM-KVHEKDVIGVTHH-PHR---NLLATYGEDCTMKLWK 512 (513)
Q Consensus 477 ----~------~~~-~~h~~~v~~~~~~-p~~---~~l~s~~~dg~i~iWd 512 (513)
. ..+ .+|.++|++++|+ +++ .+|+||+.||.|++||
T Consensus 308 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 308 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 0 223 4899999999977 566 9999999999999997
No 31
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-39 Score=320.19 Aligned_cols=302 Identities=15% Similarity=0.209 Sum_probs=247.2
Q ss_pred cccceeeeeccccCceeEEEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEE
Q 010324 201 PTTLSHTIKFGTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 279 (513)
Q Consensus 201 ~~~~~~~~~~~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 279 (513)
...+...+..+|.+.|++++|+| ++++||+|+.||+|+ +||+.+....... ..... .+|...|.+++|+|++++|
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~-vwd~~~~~~~~~~--~~~~~-~~h~~~v~~~~~~~~~~~l 126 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIK-IWNLKEIIVGEVY--SSSLT-YDCSSTVTQITMIPNFDAF 126 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEE-EEEHHHHHTTCCC--SCSEE-EECSSCEEEEEECTTSSEE
T ss_pred cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEE-EeECcccccCccc--ceeee-ccCCCCEEEEEEeCCCCEE
Confidence 34556677558999999999999 999999999999997 9998762211111 00111 1489999999999999999
Q ss_pred EEEeCCCcEEEEEcC---Ccceeeecc--------c-c--cccCeEEEE--EccCCCEEEEeeCCCcEEEEecCCCceee
Q 010324 280 ASGSQDGKIKVWRIR---SGQCLRRLE--------R-A--HSEGVTSLV--FSRDGSQILSTSFDSTARIHGLKSGKLLK 343 (513)
Q Consensus 280 ~s~~~dg~i~vwd~~---~~~~~~~~~--------~-~--~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 343 (513)
++|+.||.|++||+. +++...... . . +...+.++. +++++.++++|+.||.|++||+++++.+.
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 999999999999995 554433222 0 1 455677777 56789999999999999999999999999
Q ss_pred Eecc--cccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC---CCCeEEEEcC
Q 010324 344 EFRG--HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK---NPDHIVVCNK 418 (513)
Q Consensus 344 ~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~ 418 (513)
.+.. |...|++++|+|++++|++|+.||.|++||+++++.+..+.. .+...|.+++++|. +..++++++.
T Consensus 207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~s~~~~~l~s~~~ 281 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF-----GDHAPITHVEVCQFYGKNSVIVVGGSS 281 (437)
T ss_dssp EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC-----TTCEEEEEEEECTTTCTTEEEEEEEST
T ss_pred EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec-----CCCCceEEEEeccccCCCccEEEEEcC
Confidence 9988 889999999999999999999999999999999988887653 35568999988764 3368999999
Q ss_pred CCcEEEEEcc-CeEEEEeecCc-----------------------cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc
Q 010324 419 TSSIYIMTLQ-GQVVKSFSSGK-----------------------REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 419 ~~~i~i~d~~-~~~~~~~~~~~-----------------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 474 (513)
|+.|++||++ +.....+.... .+...+.+++|+ ++++|++|+.||.|++||+.++
T Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG
T ss_pred CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc
Confidence 9999999998 66565555321 145568889999 7899999999999999999998
Q ss_pred eeeEeeec-------------------------------------ccCCeEEEEEcCC--CCEEEEEECCCeEEecc
Q 010324 475 KLEHLMKV-------------------------------------HEKDVIGVTHHPH--RNLLATYGEDCTMKLWK 512 (513)
Q Consensus 475 ~~~~~~~~-------------------------------------h~~~v~~~~~~p~--~~~l~s~~~dg~i~iWd 512 (513)
+....+.+ |.+.|++++|+++ +.+|++|+.||.|+||+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 361 SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp GGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 87776665 8899999999998 78999999999999996
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-39 Score=315.72 Aligned_cols=279 Identities=15% Similarity=0.266 Sum_probs=246.6
Q ss_pred ccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 212 TKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
|.+.|++++|+|+|++|++|+.||.|+ +|| .++.... .+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~-i~~-~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELR-LWN-KTGALLN--------VLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEE-EEE-TTSCEEE--------EECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEE-EEe-CCCCeee--------eccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 688999999999999999999999996 999 4443332 345699999999999999999999999999999
Q ss_pred EcCCcceeeecccccccC---------------eEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEE
Q 010324 292 RIRSGQCLRRLERAHSEG---------------VTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAI 356 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 356 (513)
|+.+++.+..+. .+... +.+++|+|++ .+++++.||.|++||+++++.+..+..|...|.+++
T Consensus 177 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~ 254 (425)
T 1r5m_A 177 NVISGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLE 254 (425)
T ss_dssp ETTTTEEEEEEC-CC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEE
T ss_pred ECCCCcEEEEee-ccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEE
Confidence 999999888776 45555 8999999875 688999999999999999999999999999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEe
Q 010324 357 FTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSF 435 (513)
Q Consensus 357 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~ 435 (513)
|+|++++|++++.||.|++||+++++....+. .+...+.++.|+|++ .+++++.++.|++||+. +..+..+
T Consensus 255 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~ 326 (425)
T 1r5m_A 255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY------GHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALS 326 (425)
T ss_dssp EETTTTEEEEEETTSCEEEECSSSBSCSEEEC------CCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCccceEec------CCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEec
Confidence 99999999999999999999999988777765 467789999999986 99999999999999997 4555444
Q ss_pred ecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce--------------------eeEeeecccC--CeEEEEEc
Q 010324 436 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK--------------------LEHLMKVHEK--DVIGVTHH 493 (513)
Q Consensus 436 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~--------------------~~~~~~~h~~--~v~~~~~~ 493 (513)
.. +...+.+++|+|+++++++++.||.|++||+.+++ .+..+.+|.. .|++++|+
T Consensus 327 ~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 403 (425)
T 1r5m_A 327 IV---DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN 403 (425)
T ss_dssp EC---TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC
T ss_pred cc---CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc
Confidence 43 35679999999999999999999999999999888 8889999976 99999999
Q ss_pred CCCCEEEEEECCCeEEeccC
Q 010324 494 PHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 494 p~~~~l~s~~~dg~i~iWdp 513 (513)
|++++|++++.||.|++||.
T Consensus 404 ~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 404 CAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp TTSSEEEEEESSSCCEEEEC
T ss_pred CCCceEEEEecCceEEEEee
Confidence 99999999999999999983
No 33
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6e-40 Score=312.83 Aligned_cols=290 Identities=13% Similarity=0.141 Sum_probs=225.0
Q ss_pred cCceeEEEECCCCCEEEEEecCC-------eEEEEEecccccccccc--ccccccccccCCccEEEEEEcCCCCEEEEEe
Q 010324 213 KSHAECARFSPDGQFLVSCSFDG-------FIEVVWDYLSGKLKKDL--QYQADETFMMHDETVLCIEFSRDSEMLASGS 283 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg-------~i~~iwd~~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 283 (513)
..+|+|++|+|||++||+|+.+. .|+ +|++..+...... .......+.+|...|.+++++ ++.+++|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~-~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLT-VLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEE-EEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEE-EEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 45899999999999999997643 597 9998765433221 111223466788899988875 45666653
Q ss_pred -----------CCCcEEEEEcCCcceeeecc--------cccccCeEEEEEccCCCEEEEe--eCCCcEEEEecCCCcee
Q 010324 284 -----------QDGKIKVWRIRSGQCLRRLE--------RAHSEGVTSLVFSRDGSQILST--SFDSTARIHGLKSGKLL 342 (513)
Q Consensus 284 -----------~dg~i~vwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~ 342 (513)
.|+.+++|++.++....... ..+...+.+++|+|||++++++ +.|++|++||+++++.+
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE
Confidence 46789999987653221111 1234568999999999998754 47899999999999998
Q ss_pred eEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC--
Q 010324 343 KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS-- 420 (513)
Q Consensus 343 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-- 420 (513)
..+. |...|.+++|+|+|+++++++.+ .+.+|+..++........ ..+...+.+++|+|++ ..+++++.++
T Consensus 171 ~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~----~~~~~~v~~v~fspdg-~~l~~~s~d~~~ 243 (365)
T 4h5i_A 171 FEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTD----FDKNWSLSKINFIADD-TVLIAASLKKGK 243 (365)
T ss_dssp EEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECC----CCTTEEEEEEEEEETT-EEEEEEEESSSC
T ss_pred EEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeec----CCCCCCEEEEEEcCCC-CEEEEEecCCcc
Confidence 8886 67789999999999999998855 577777777776544332 2577889999999988 7777777666
Q ss_pred --cEEEEEccCeEE--EEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEee-ecccCCeEEEEEcCC
Q 010324 421 --SIYIMTLQGQVV--KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM-KVHEKDVIGVTHHPH 495 (513)
Q Consensus 421 --~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~ 495 (513)
.++.|+...... ........+...|++++|+|+|++||+|+.|+.|++||+.+++++..+ .+|..+|++++|+||
T Consensus 244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpd 323 (365)
T 4h5i_A 244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPD 323 (365)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTT
T ss_pred eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCC
Confidence 578888763322 222222345677999999999999999999999999999999998874 789999999999999
Q ss_pred CCEEEEEECCCeEEecc
Q 010324 496 RNLLATYGEDCTMKLWK 512 (513)
Q Consensus 496 ~~~l~s~~~dg~i~iWd 512 (513)
+++|||||.|++|+|||
T Consensus 324 g~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 324 STYVASVSAANTIHIIK 340 (365)
T ss_dssp SCEEEEEETTSEEEEEE
T ss_pred CCEEEEEeCCCeEEEEE
Confidence 99999999999999998
No 34
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4e-39 Score=303.85 Aligned_cols=251 Identities=18% Similarity=0.169 Sum_probs=214.0
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 289 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 289 (513)
..|...|.+++|+|++ .|++|+.||+|+ +||+.+++...... ..+.+|...|++++|+|+|++|++|+.|++|+
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~-lWd~~~~~~~~~~~----~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~ 152 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVE-LWELDENETLIVSK----FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEE-EEEECTTSSCEEEE----EEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEE-EEeccCCCceeEee----ccccCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 3677889999999985 688999999998 99999887654332 23457999999999999999999999999999
Q ss_pred EEEcCCcceeeecccccccCeEEEEEccCCC-EEEEeeCCCcEEEEecCCCceeeEec--ccccceeEEEEccC-CCEEE
Q 010324 290 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGS-QILSTSFDSTARIHGLKSGKLLKEFR--GHSSYVNDAIFTND-GSRVV 365 (513)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~ 365 (513)
+||+.+++++..+. +|...|.+++|+|++. .|++|+.|++|++||+++++....+. .+...+.+++|+|+ +++++
T Consensus 153 iwd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 153 VWDLAQQVVLSSYR-AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp EEETTTTEEEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred EEECCCCcEEEEEc-CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence 99999999999987 8999999999999875 78899999999999999999887764 35567999999994 56889
Q ss_pred EEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcE
Q 010324 366 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDF 445 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 445 (513)
+|+.||.|++||+++++++.++. +|...|++++|+|++..++++++.|+.|++||+....+..+. .|...|
T Consensus 232 sg~~dg~v~~wd~~~~~~~~~~~------~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~---~H~~~V 302 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSCVLSSA------VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQ---AHRDFV 302 (344)
T ss_dssp EEETTSEEEEEESCC--CCEEEE------CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEEC---CCSSCE
T ss_pred EeccCCcEEEEECCCCcEEEEEc------CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEc---CCCCCE
Confidence 99999999999999999888876 678899999999998789999999999999999866554443 356789
Q ss_pred EEEEECCCCC-EEEEEecCceEEEEECCCcee
Q 010324 446 VAACVSPKGE-WIYCVGEDRNLYCFSHQSGKL 476 (513)
Q Consensus 446 ~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~ 476 (513)
.+++|+|+++ ++++|+.||+|++|++.+...
T Consensus 303 ~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 303 RDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 9999999986 567899999999999987543
No 35
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.2e-40 Score=320.67 Aligned_cols=290 Identities=16% Similarity=0.185 Sum_probs=231.6
Q ss_pred cccCceeEEEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEEEeCCCcE
Q 010324 211 GTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKI 288 (513)
Q Consensus 211 ~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i 288 (513)
+|...|+|++|+| ++++||+|+.||.|+ |||+.++.....+ .+.+|.+.|++++|+| ++.+|++|+.||+|
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~-lWd~~~~~~~~~~------~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIM-LWNFGIKDKPTFI------KGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEE-EECSSCCSCCEEE------CCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEE-EEECCCCCceeEE------EccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 7889999999999 677999999999997 9999877543222 3457999999999998 78999999999999
Q ss_pred EEEEcCCcceeeecc-cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCC-EEEE
Q 010324 289 KVWRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS-RVVT 366 (513)
Q Consensus 289 ~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 366 (513)
++||++++....... ..+...+.+++|+|++.+|++|+.||.|++||++ ++.+..+.+|...|.+++|+|++. ++++
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLAT 268 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEE
Confidence 999998765432222 1234567899999999999999999999999985 567778889999999999999876 6889
Q ss_pred EeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCcc---CC
Q 010324 367 ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKR---EG 442 (513)
Q Consensus 367 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~---~~ 442 (513)
++.|+.|++||+++.+....+. ...+|...|.+++|+|++ .++++++.|+.|++||+. +.....+..+.. ..
T Consensus 269 ~s~d~~v~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 344 (435)
T 4e54_B 269 ASVDQTVKIWDLRQVRGKASFL---YSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 344 (435)
T ss_dssp EETTSBCCEEETTTCCSSSCCS---BCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS
T ss_pred ecCcceeeEEecccccccceEE---EeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccceEEeccccccccc
Confidence 9999999999999876544332 223678899999999987 899999999999999998 343433332211 11
Q ss_pred CcEEEEEECCCCCEEEEEe------------cCceEEEEECCCceeeEeee-cccCCeEEE-EEcCCCCEEEEEECCCeE
Q 010324 443 GDFVAACVSPKGEWIYCVG------------EDRNLYCFSHQSGKLEHLMK-VHEKDVIGV-THHPHRNLLATYGEDCTM 508 (513)
Q Consensus 443 ~~~~~~~~s~~~~~l~~g~------------~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~-~~~p~~~~l~s~~~dg~i 508 (513)
..+...+|+|++.+++++. .++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |++|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i 423 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHI 423 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEE
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcE
Confidence 1233456777777666664 23579999999999887764 678888887 6999999999876 7899
Q ss_pred EeccC
Q 010324 509 KLWKP 513 (513)
Q Consensus 509 ~iWdp 513 (513)
+||++
T Consensus 424 ~iW~~ 428 (435)
T 4e54_B 424 LIWSQ 428 (435)
T ss_dssp EECCC
T ss_pred EEEEC
Confidence 99985
No 36
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.4e-39 Score=309.81 Aligned_cols=280 Identities=21% Similarity=0.329 Sum_probs=242.4
Q ss_pred cccCc--eeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcE
Q 010324 211 GTKSH--AECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKI 288 (513)
Q Consensus 211 ~h~~~--v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 288 (513)
+|... +.+++|++ ..+++++.||.|+ +||..+++....... .|...|.+++|+|++++|++|+.||.|
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~-lw~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~l~~~~~dg~i 158 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVY-VWNADSGSVSALAET-------DESTYVASVKWSHDGSFLSVGLGNGLV 158 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEE-EEETTTCCEEEEEEC-------CTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEE-EeeCCCCcEeEeeec-------CCCCCEEEEEECCCCCEEEEECCCCeE
Confidence 55555 44566665 5688889999996 999998876543332 278999999999999999999999999
Q ss_pred EEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecC-CCceeeEecccccceeEEEEccCCCEEEEE
Q 010324 289 KVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK-SGKLLKEFRGHSSYVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 289 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 367 (513)
++||+.+++.+..+. .|...|.+++| ++..+++|+.||.|++||++ .+..+..+.+|...|.+++|+|++++|+++
T Consensus 159 ~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 235 (401)
T 4aez_A 159 DIYDVESQTKLRTMA-GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG 235 (401)
T ss_dssp EEEETTTCCEEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEECcCCeEEEEec-CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEE
Confidence 999999999988887 89999999999 46799999999999999998 566788888999999999999999999999
Q ss_pred eCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc--CCCcEEEEEcc-CeEEEEeecCccCCCc
Q 010324 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN--KTSSIYIMTLQ-GQVVKSFSSGKREGGD 444 (513)
Q Consensus 368 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~~~~i~i~d~~-~~~~~~~~~~~~~~~~ 444 (513)
+.||.|++||+++++....+. .+...+.+++|+|++..++++++ .|+.|++||+. +.....+. +...
T Consensus 236 ~~d~~v~iwd~~~~~~~~~~~------~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----~~~~ 305 (401)
T 4aez_A 236 GNDNVVQIWDARSSIPKFTKT------NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----AGSQ 305 (401)
T ss_dssp ETTSCEEEEETTCSSEEEEEC------CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE----CSSC
T ss_pred eCCCeEEEccCCCCCccEEec------CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe----CCCc
Confidence 999999999999988887765 56788999999999888888876 79999999998 55555553 3456
Q ss_pred EEEEEECCCCCEEEEE--ecCceEEEEECCCceeeE--eeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 445 FVAACVSPKGEWIYCV--GEDRNLYCFSHQSGKLEH--LMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 445 ~~~~~~s~~~~~l~~g--~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+.+++|+|++++++++ +.||.|++||+.++.... .+.+|.+.|.+++|+|++.+|++++.||.|++||.
T Consensus 306 v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred EEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 9999999999999994 489999999999876554 46789999999999999999999999999999984
No 37
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-38 Score=296.41 Aligned_cols=281 Identities=22% Similarity=0.350 Sum_probs=242.8
Q ss_pred cceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE
Q 010324 203 TLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 282 (513)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 282 (513)
++.+++. +|.+.|++++| |++++|++|+.||.|+ +||+.++..... +..|...|.+++|+|++++|++|
T Consensus 9 ~~~~~l~-~h~~~v~~~~~-~~~~~l~s~~~dg~v~-vw~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~ 77 (313)
T 3odt_A 9 QLSATLK-GHDQDVRDVVA-VDDSKVASVSRDGTVR-LWSKDDQWLGTV--------VYTGQGFLNSVCYDSEKELLLFG 77 (313)
T ss_dssp EEEEEEC-CCSSCEEEEEE-EETTEEEEEETTSEEE-EEEESSSEEEEE--------EEECSSCEEEEEEETTTTEEEEE
T ss_pred HHHHHhh-CCCCCcEEEEe-cCCCEEEEEEcCCcEE-EEECCCCEEEEE--------eecCCccEEEEEECCCCCEEEEe
Confidence 4455665 99999999999 9999999999999997 999987665443 33589999999999999999999
Q ss_pred eCCCcEEEEEcCCc---ceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEcc
Q 010324 283 SQDGKIKVWRIRSG---QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 359 (513)
Q Consensus 283 ~~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 359 (513)
+.||.|++|++... +....+. .|...|.+++| +++++++++.||.|++|| .++....+..|...+.++.|+|
T Consensus 78 ~~dg~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~ 152 (313)
T 3odt_A 78 GKDTMINGVPLFATSGEDPLYTLI-GHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVS 152 (313)
T ss_dssp ETTSCEEEEETTCCTTSCC-CEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEE
T ss_pred cCCCeEEEEEeeecCCCCcccchh-hcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEcc
Confidence 99999999998764 4455554 78999999999 577999999999999999 6778888889999999999998
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeec
Q 010324 360 -DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSS 437 (513)
Q Consensus 360 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~ 437 (513)
+++++++++.||.|++||. .+....+.. .+...+.+++++|++. +++++.++.|++||++ +..+..+..
T Consensus 153 ~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~-----~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~~~~~~ 223 (313)
T 3odt_A 153 FSENKFLTASADKTIKLWQN--DKVIKTFSG-----IHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVLRTYEG 223 (313)
T ss_dssp TTTTEEEEEETTSCEEEEET--TEEEEEECS-----SCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEECCCCEEEEec--CceEEEEec-----cCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhhhhhhhc
Confidence 8999999999999999994 344455442 2677899999999873 9999999999999998 555555543
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+...+.+++|+|++ .+++++.||.|++||+.+++.+..+..|...|++++|+|++. +++++.||.|++||.
T Consensus 224 ---~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 224 ---HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp ---CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred ---CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 45679999999999 588999999999999999999999999999999999999998 667999999999984
No 38
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.6e-39 Score=299.68 Aligned_cols=267 Identities=24% Similarity=0.374 Sum_probs=232.7
Q ss_pred eccCcccccccccccCcccc--eeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEecccccccccccccccccccc
Q 010324 185 LFRGTAAMKQDVEDMYPTTL--SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMM 262 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~ 262 (513)
++.+.......+|+...... ...+. +|...|.+++|+|++.++++|+.|++|+ +||+.+++....+ ..
T Consensus 51 l~tgs~D~~v~vW~~~~~~~~~~~~l~-gh~~~v~~~~~~~~~~~l~s~s~D~~i~-lWd~~~~~~~~~~--------~~ 120 (321)
T 3ow8_A 51 VVTGSLDDLVKVWKWRDERLDLQWSLE-GHQLGVVSVDISHTLPIAASSSLDAHIR-LWDLENGKQIKSI--------DA 120 (321)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECSSSSEEEEEETTSEEE-EEETTTTEEEEEE--------EC
T ss_pred EEEEcCCCCEEEEECCCCCeeeeeeec-cCCCCEEEEEECCCCCEEEEEeCCCcEE-EEECCCCCEEEEE--------eC
Confidence 33344444556666554433 22343 9999999999999999999999999997 9999988765433 34
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 342 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 342 (513)
|...+.+++|+|++++|++|+.||.|++||+.+++....+. .+...|.+++|+|++++|++|+.||.|++||+++++.+
T Consensus 121 ~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~ 199 (321)
T 3ow8_A 121 GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 199 (321)
T ss_dssp CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE
Confidence 78889999999999999999999999999999999888876 78889999999999999999999999999999999999
Q ss_pred eEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcE
Q 010324 343 KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 422 (513)
Q Consensus 343 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 422 (513)
..+.+|..+|.+++|+|++++|++++.||.|++||+++++....+. +|...|.+++|+|++ ..+++++.|+.|
T Consensus 200 ~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~h~~~v~~~~~sp~~-~~l~s~s~D~~v 272 (321)
T 3ow8_A 200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS------GHASWVLNVAFCPDD-THFVSSSSDKSV 272 (321)
T ss_dssp EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC------CCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc------CCCCceEEEEECCCC-CEEEEEeCCCcE
Confidence 9999999999999999999999999999999999999988877765 678899999999987 899999999999
Q ss_pred EEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 423 YIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 423 ~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
++||+. +..+..+.. +...+.+++|+|+|++|++++.||.|++||..
T Consensus 273 ~iwd~~~~~~~~~~~~---h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 273 KVWDVGTRTCVHTFFD---HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEETTTTEEEEEECC---CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEeCCCCEEEEEEcC---CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999998 555555543 45679999999999999999999999999963
No 39
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.2e-38 Score=306.78 Aligned_cols=281 Identities=19% Similarity=0.285 Sum_probs=240.4
Q ss_pred ceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010324 215 HAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR 294 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~ 294 (513)
..++++||++ +.||+|. |++|+ +||..+++....+. +.+|...|++++|+|+|++|++|+.||.|++||+.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~-lWd~~tg~~~~~~~------~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~ 177 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVY-LWSASSGDILQLLQ------MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEE-EEETTTCCEEEEEE------CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cceeEEECCC-CEEEEEe-CCEEE-EEECCCCCEEEEEE------ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC
Confidence 4678999975 5888876 99996 99999988665443 34588899999999999999999999999999999
Q ss_pred CcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC-ceeeEecccccceeEEEEccCCCEEEEEeCCCcE
Q 010324 295 SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTV 373 (513)
Q Consensus 295 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 373 (513)
+++.+..+. +|...+.+++|+ +..+++|+.|+.+++||.... ..+..+.+|...+..+.|+|+++++++++.|+.+
T Consensus 178 ~~~~~~~~~-~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v 254 (420)
T 4gga_A 178 QQKRLRNMT-SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 254 (420)
T ss_dssp TTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCcEEEEEe-CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccc
Confidence 999999887 899999988875 679999999999999998764 4567788999999999999999999999999999
Q ss_pred EEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE--cCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEE
Q 010324 374 KVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC--NKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACV 450 (513)
Q Consensus 374 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~ 450 (513)
++||..+++..... ......+...|.+++|+|.+...++++ +.|+.|++||+. +.....+.. ...+.++.|
T Consensus 255 ~i~~~~~~~~~~~~--~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~----~~~v~~~~~ 328 (420)
T 4gga_A 255 NVWPSAPGEGGWVP--LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA----HSQVCSILW 328 (420)
T ss_dssp EEEESSCCSSCSCC--SEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC----SSCEEEEEE
T ss_pred eEEeecccccccee--eeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc----ccceeeeee
Confidence 99999877532111 111235778999999999988888764 578999999998 455554443 346889999
Q ss_pred CCCCCEEEEEe--cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 451 SPKGEWIYCVG--EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 451 s~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+++++.+++++ .||.|++||+.+++++..+.+|.+.|++++|+|++.+|+|||.||+|+|||.
T Consensus 329 ~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 329 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 99999998776 7999999999999999999999999999999999999999999999999984
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-39 Score=317.96 Aligned_cols=310 Identities=14% Similarity=0.216 Sum_probs=251.2
Q ss_pred cccccccccCcccce-eeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEE
Q 010324 191 AMKQDVEDMYPTTLS-HTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLC 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~ 269 (513)
.....+|+....... ......|...|.+++|+|++++|++|+.||.|+ +||+.+..... .....+.+|...|.+
T Consensus 44 d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~-vw~~~~~~~~~----~~~~~~~~h~~~v~~ 118 (416)
T 2pm9_A 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE-LYSTNEANNAI----NSMARFSNHSSSVKT 118 (416)
T ss_dssp CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE-EECCSSTTSCC----CEEEECCCSSSCCCE
T ss_pred CCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE-Eeecccccccc----cchhhccCCccceEE
Confidence 344556666554422 122237899999999999999999999999997 99998722111 122355679999999
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEEcCCcc------eeeec--ccccccCeEEEEEccC-CCEEEEeeCCCcEEEEecCCC
Q 010324 270 IEFSRD-SEMLASGSQDGKIKVWRIRSGQ------CLRRL--ERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSG 339 (513)
Q Consensus 270 l~~~~~-~~~l~s~~~dg~i~vwd~~~~~------~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~ 339 (513)
++|+|+ +.+|++++.||.|++||+.+++ ..... ...|...|.+++|+|+ +.++++++.||.|++||++++
T Consensus 119 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 198 (416)
T 2pm9_A 119 VKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK 198 (416)
T ss_dssp EEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT
T ss_pred EEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC
Confidence 999998 8999999999999999999876 33222 1368889999999998 789999999999999999999
Q ss_pred ceeeEeccc------ccceeEEEEccCC-CEEEEEeCCC---cEEEEeCCCCc-eeEeecCCCCCCCCCceeeEEEecCC
Q 010324 340 KLLKEFRGH------SSYVNDAIFTNDG-SRVVTASSDC---TVKVWDLKSTD-CLQTFKPPPPLRGGDASVNSVHLFPK 408 (513)
Q Consensus 340 ~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~dg---~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (513)
+.+..+..+ ...|.+++|+|++ .++++++.|+ .|++||++++. ....+. .+|...+.+++|+|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~v~~~~~s~~ 273 (416)
T 2pm9_A 199 KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-----QGHQKGILSLDWCHQ 273 (416)
T ss_dssp EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-----SCCSSCEEEEEECSS
T ss_pred CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-----cCccCceeEEEeCCC
Confidence 998888876 7889999999997 6899999998 99999999863 333222 157789999999995
Q ss_pred CCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCC-CEEEEEecCceEEEEECCCceeeEeee-----
Q 010324 409 NPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKG-EWIYCVGEDRNLYCFSHQSGKLEHLMK----- 481 (513)
Q Consensus 409 ~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~----- 481 (513)
++.++++++.|+.|++||+. +..+..+.. +...+.+++|+|++ .++++++.||.|++||+.++.......
T Consensus 274 ~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~ 350 (416)
T 2pm9_A 274 DEHLLLSSGRDNTVLLWNPESAEQLSQFPA---RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETK 350 (416)
T ss_dssp CSSCEEEEESSSEEEEECSSSCCEEEEEEC---SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC------
T ss_pred CCCeEEEEeCCCCEEEeeCCCCccceeecC---CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccccc
Confidence 55999999999999999998 555555543 45678899999999 899999999999999998765432221
Q ss_pred ------------------------------cccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 482 ------------------------------VHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 482 ------------------------------~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.|..++++++|+|+|++|++++.||+|+||++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 351 QQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp ----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred ccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 16678889999999999999999999999985
No 41
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.3e-38 Score=294.26 Aligned_cols=281 Identities=19% Similarity=0.269 Sum_probs=236.4
Q ss_pred eeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010324 216 AECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS 295 (513)
Q Consensus 216 v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~ 295 (513)
.++++||+++ +||+|. |++|+ |||+.+++....+. +.+|...|++++|+|++++|++|+.||+|++||+.+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~-iWd~~tg~~~~~~~------~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVY-LWSASSGDILQLLQ------MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEE-EEETTTCCEEEEEE------CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ceEEEECCCC-EEEEEe-CCEEE-EEECCCCCEEEEEE------ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC
Confidence 5789999986 777765 99997 99999988765443 345888999999999999999999999999999999
Q ss_pred cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC-ceeeEecccccceeEEEEccCCCEEEEEeCCCcEE
Q 010324 296 GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374 (513)
Q Consensus 296 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 374 (513)
++.+..+. +|...+.++.+ ++..+++++.++.+.+|+...+ ..+..+.+|...+..+.++++++++++++.||.|+
T Consensus 99 ~~~~~~~~-~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 175 (318)
T 4ggc_A 99 QKRLRNMT-SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVN 175 (318)
T ss_dssp TEEEEEEE-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ceeEEEec-CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCccee
Confidence 99998887 78888876655 5679999999999999998766 45667788999999999999999999999999999
Q ss_pred EEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEE--EEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECC
Q 010324 375 VWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV--VCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSP 452 (513)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~ 452 (513)
+||+++++...... .....+...+.++.+.|.++..+. +++.++.|++||........... +...+..++++|
T Consensus 176 iwd~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~---~~~~v~~~~~~~ 250 (318)
T 4ggc_A 176 VWPSAPGEGGWVPL--QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD---AHSQVCSILWSP 250 (318)
T ss_dssp EEESSCBTTBSCCS--EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE---CSSCEEEEEEET
T ss_pred EEECCCCcccccce--eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc---ceeeeeeeeecc
Confidence 99999876432211 111245678999999998877654 45678999999998544433332 345688999999
Q ss_pred CCCEEEEEe--cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 453 KGEWIYCVG--EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 453 ~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
++..+++++ .||.|++||+.+++++..+.+|.+.|++++|+|++++|+|||.||+|+|||.
T Consensus 251 ~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 251 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 999888765 7999999999999999999999999999999999999999999999999984
No 42
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=311.14 Aligned_cols=288 Identities=14% Similarity=0.236 Sum_probs=243.2
Q ss_pred cccCceeEEEECCCCC-EEEEEecCCeEEEEEec----ccccc------cccccc--ccccccccCCccEEEEEEcCCCC
Q 010324 211 GTKSHAECARFSPDGQ-FLVSCSFDGFIEVVWDY----LSGKL------KKDLQY--QADETFMMHDETVLCIEFSRDSE 277 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~-~la~g~~dg~i~~iwd~----~~~~~------~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~ 277 (513)
.|.+.|++++|+|+|+ +||+|+.||.|+ +|++ .+++. ...+.. .......+|...|.+++|+|+++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVAR-LARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEE-EEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEE-EEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 6678999999999999 999999999997 9999 77762 221111 01111223688999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccc------
Q 010324 278 MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSY------ 351 (513)
Q Consensus 278 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------ 351 (513)
+|++|+.||.|++|| .+++.+..+. .|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 999999999999999 6777777776 79999999999999999999999999999999999999888877766
Q ss_pred ---------eeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcE
Q 010324 352 ---------VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 422 (513)
Q Consensus 352 ---------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 422 (513)
+.+++|+|++ .+++++.||.|++||+++++....+. .+...+.+++|+|++ ..+++++.++.|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~------~~~~~i~~~~~~~~~-~~l~~~~~d~~i 271 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI------GHHGPISVLEFNDTN-KLLLSASDDGTL 271 (425)
T ss_dssp ------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC------CCSSCEEEEEEETTT-TEEEEEETTSCE
T ss_pred ccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec------cCCCceEEEEECCCC-CEEEEEcCCCEE
Confidence 9999999975 68899999999999999988777665 567889999999987 799999999999
Q ss_pred EEEEccC-eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEE
Q 010324 423 YIMTLQG-QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLAT 501 (513)
Q Consensus 423 ~i~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 501 (513)
++||+.. .....+. .+...+.+++|+|++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++
T Consensus 272 ~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 272 RIWHGGNGNSQNCFY---GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAV 347 (425)
T ss_dssp EEECSSSBSCSEEEC---CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEE
T ss_pred EEEECCCCccceEec---CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEE
Confidence 9999984 3344443 245679999999999 9999999999999999999999999999999999999999999999
Q ss_pred EECCCeEEeccC
Q 010324 502 YGEDCTMKLWKP 513 (513)
Q Consensus 502 ~~~dg~i~iWdp 513 (513)
++.||.|++||.
T Consensus 348 ~~~dg~i~i~~~ 359 (425)
T 1r5m_A 348 AFMDGQVNVYDL 359 (425)
T ss_dssp EETTSCEEEEEC
T ss_pred EECCCeEEEEEC
Confidence 999999999984
No 43
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.5e-38 Score=298.17 Aligned_cols=268 Identities=19% Similarity=0.292 Sum_probs=232.9
Q ss_pred cCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCcc
Q 010324 187 RGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDET 266 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 266 (513)
.+.......+|+.......+.+. .|...|.+++|+|+|++||+|+.|+.++ +|++.++.... .....+.+|...
T Consensus 72 s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~v~-iw~~~~~~~~~----~~~~~~~~h~~~ 145 (340)
T 1got_B 72 SASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICS-IYNLKTREGNV----RVSRELAGHTGY 145 (340)
T ss_dssp EEETTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEEETTCEEE-EEETTTCSBSC----EEEEEEECCSSC
T ss_pred EEeCCCcEEEEECCCCCcceEee-cCCccEEEEEECCCCCEEEEEeCCCeEE-EEECccCCCcc----eeEEEecCCCcc
Confidence 34445566678877777777776 8999999999999999999999999997 99998754221 122356679999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEec
Q 010324 267 VLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR 346 (513)
Q Consensus 267 v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 346 (513)
|.++.|++++. +++++.|+.|++||+.+++.+..+. +|...|.+++|+|+++++++|+.||.|++||++++.....+.
T Consensus 146 v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~ 223 (340)
T 1got_B 146 LSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223 (340)
T ss_dssp EEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred EEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Confidence 99999998875 8899999999999999999988886 899999999999999999999999999999999999999999
Q ss_pred ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEE
Q 010324 347 GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT 426 (513)
Q Consensus 347 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d 426 (513)
+|...|.+++|+|++++|++++.||.|++||+++++....+... .+...+.+++|+|++ .++++++.|+.|++||
T Consensus 224 ~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~----~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD----NIICGITSVSFSKSG-RLLLAGYDDFNCNVWD 298 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT----TCCSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC----CcccceEEEEECCCC-CEEEEECCCCeEEEEE
Confidence 99999999999999999999999999999999998877766432 234579999999987 8999999999999999
Q ss_pred cc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 427 LQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 427 ~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
.. +.....+.. |...+.+++|+|+|.+|++|+.||.|++||
T Consensus 299 ~~~~~~~~~~~~---h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 299 ALKADRAGVLAG---HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTTCCEEEEEEC---CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccCcEeeEeec---CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 87 445555443 567899999999999999999999999996
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.5e-39 Score=312.83 Aligned_cols=302 Identities=18% Similarity=0.183 Sum_probs=246.8
Q ss_pred ccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEE
Q 010324 192 MKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIE 271 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 271 (513)
....+|+.........+. +| ..+.+..|+|++++||+|+.||.|+ +||+.+++... .+.+|...|.+++
T Consensus 78 ~~v~i~d~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~--------~~~~h~~~v~~~~ 146 (420)
T 3vl1_A 78 GHDFLFNTIIRDGSKMLK-RA-DYTAVDTAKLQMRRFILGTTEGDIK-VLDSNFNLQRE--------IDQAHVSEITKLK 146 (420)
T ss_dssp TEEEEEECCSEETTTTSC-SC-CEEEEEEECSSSCEEEEEETTSCEE-EECTTSCEEEE--------ETTSSSSCEEEEE
T ss_pred CcEEEEEecccceeeEEe-cC-CceEEEEEecCCCEEEEEECCCCEE-EEeCCCcceee--------ecccccCccEEEE
Confidence 344455555444444443 33 4455668899999999999999997 99998776543 3346999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccc---
Q 010324 272 FSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH--- 348 (513)
Q Consensus 272 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--- 348 (513)
|+|++++|++|+.||.|++||+.+++.+..+. +|...|.+++|+|++++|++++.||.|++||+++++.+..+..+
T Consensus 147 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 225 (420)
T 3vl1_A 147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP 225 (420)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBT
T ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCC
Confidence 99999999999999999999999999888886 89999999999999999999999999999999999988888743
Q ss_pred c---------------------cceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecC
Q 010324 349 S---------------------SYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP 407 (513)
Q Consensus 349 ~---------------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (513)
. ..+.+++|+|+++++++++.||.|++||+++++....+.. .+...+.+++|+|
T Consensus 226 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~ 300 (420)
T 3vl1_A 226 HDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS-----KFTCSCNSLTVDG 300 (420)
T ss_dssp TCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC-----TTSSCEEEEEECS
T ss_pred CCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc-----ccCCCceeEEEeC
Confidence 2 4455556678999999999999999999999987777642 4677899999999
Q ss_pred CCCCeEEEEcCCCcEEEEEccC--eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc---------ee
Q 010324 408 KNPDHIVVCNKTSSIYIMTLQG--QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG---------KL 476 (513)
Q Consensus 408 ~~~~~l~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---------~~ 476 (513)
++..++++++.||.|++||++. ..+..+..+ +...+.++.+ ++++++++++.||.|++|++... ..
T Consensus 301 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~ 377 (420)
T 3vl1_A 301 NNANYIYAGYENGMLAQWDLRSPECPVGEFLIN--EGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFET 377 (420)
T ss_dssp SCTTEEEEEETTSEEEEEETTCTTSCSEEEEES--TTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTS
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc--CCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccC
Confidence 9866999999999999999983 224444432 3455667754 57889999999999999998763 22
Q ss_pred eEeeecccCCeEEEEEcCCCC---EEEEEECCCeEEeccC
Q 010324 477 EHLMKVHEKDVIGVTHHPHRN---LLATYGEDCTMKLWKP 513 (513)
Q Consensus 477 ~~~~~~h~~~v~~~~~~p~~~---~l~s~~~dg~i~iWdp 513 (513)
...+.+|.+.|.+++|+|++. .+++++.+|.+.+|+.
T Consensus 378 ~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 378 PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp CEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred ccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence 234567889999999999998 7888888999999974
No 45
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.4e-38 Score=304.33 Aligned_cols=299 Identities=18% Similarity=0.242 Sum_probs=244.9
Q ss_pred cccCceeEEEECC-CCCEEEEEecCCeEEEEEecccccccccccccc-----ccccccCCccEEEEEEcC-CCCEEEEEe
Q 010324 211 GTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQA-----DETFMMHDETVLCIEFSR-DSEMLASGS 283 (513)
Q Consensus 211 ~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~-----~~~~~~h~~~v~~l~~~~-~~~~l~s~~ 283 (513)
+|.+.|++++|+| ++++||+|+.||.|+ +||+.++.......... .....+|...|.+++|+| ++.+|++++
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIV-LYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEE-EEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEE-EEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 8999999999999 999999999999997 99999887655443211 112235999999999999 788999999
Q ss_pred CCCcEEEEEcCCcceeeecccccccCeEEEEEccC---CCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccC
Q 010324 284 QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD---GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND 360 (513)
Q Consensus 284 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 360 (513)
.||.|++||+.+++....+. +...+.++.|+|. +.++++++.||.|++||+++++.+..+..|...|.+++|+|+
T Consensus 120 ~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (408)
T 4a11_B 120 FDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPR 197 (408)
T ss_dssp TTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSS
T ss_pred CCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCC
Confidence 99999999999999887775 7788999999984 459999999999999999999999999999999999999999
Q ss_pred CC-EEEEEeCCCcEEEEeCCCCc-eeEeecC---------CCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC
Q 010324 361 GS-RVVTASSDCTVKVWDLKSTD-CLQTFKP---------PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG 429 (513)
Q Consensus 361 ~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 429 (513)
++ .+++++.||.|++||++++. ....+.. ......+...+.+++|+|++ ..+++++.|+.|++||+..
T Consensus 198 ~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 198 YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT
T ss_pred CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCC
Confidence 98 58899999999999998775 3333321 11224678899999999987 8999999999999999984
Q ss_pred eEE-EEeecCc--cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCC
Q 010324 430 QVV-KSFSSGK--REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDC 506 (513)
Q Consensus 430 ~~~-~~~~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 506 (513)
... ....... ..............+..+++++.++.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 356 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDC 356 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCC
Confidence 322 2111110 0111122222234455677778899999999999999999999999999999999999999999999
Q ss_pred eEEeccC
Q 010324 507 TMKLWKP 513 (513)
Q Consensus 507 ~i~iWdp 513 (513)
.|++||+
T Consensus 357 ~i~iw~~ 363 (408)
T 4a11_B 357 NILAWVP 363 (408)
T ss_dssp CEEEEEE
T ss_pred eEEEEeC
Confidence 9999984
No 46
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.7e-40 Score=314.61 Aligned_cols=292 Identities=13% Similarity=0.114 Sum_probs=223.0
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
.+.+.|++++|+|+|++||+|+.||.|+ +||+.++.. .....+.+|...|.+++|+|++++|++++.||.|++
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~-iw~~~~~~~------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVE-LYEQDGNGW------KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBC-EEEEETTEE------EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEE-EEEccCCce------EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 4667899999999999999999999997 999987621 122345569999999999999999999999999999
Q ss_pred EEcCCcc---eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc---eeeEecc-cccceeEEEEccCCCE
Q 010324 291 WRIRSGQ---CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK---LLKEFRG-HSSYVNDAIFTNDGSR 363 (513)
Q Consensus 291 wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~ 363 (513)
||+.+++ ....+. .|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.+++|+|++++
T Consensus 82 wd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLL-RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp C------CCCCEEECC-CCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred EEcCCCCceeeeeEec-ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 9999877 455554 789999999999999999999999999999999887 3677777 9999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceeEe------------ecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-
Q 010324 364 VVTASSDCTVKVWDLKSTDCLQT------------FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ- 430 (513)
Q Consensus 364 l~~~~~dg~i~iwd~~~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~- 430 (513)
|++++.||.|++||+++...... -...... .|...+.+++|+|++ .++++++.|+.|++||+...
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTT
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCC
Confidence 99999999999999864321110 0000111 577889999999987 79999999999999999843
Q ss_pred E-EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce--e-------------------------e-----
Q 010324 431 V-VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK--L-------------------------E----- 477 (513)
Q Consensus 431 ~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~--~-------------------------~----- 477 (513)
. .........+...+.+++|+|+|++|++|+.++.+ +|+...+. . .
T Consensus 239 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (377)
T 3dwl_C 239 QPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSF 317 (377)
T ss_dssp SCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------
T ss_pred CcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccc
Confidence 2 12223333456779999999999999999877766 66554211 0 0
Q ss_pred ----E----------------eeecccCCeEEEEEcCCC-C---EEEEEECCCeEEeccC
Q 010324 478 ----H----------------LMKVHEKDVIGVTHHPHR-N---LLATYGEDCTMKLWKP 513 (513)
Q Consensus 478 ----~----------------~~~~h~~~v~~~~~~p~~-~---~l~s~~~dg~i~iWdp 513 (513)
. ....|.+.|+++++.+.. . .|+|||.||+|+|||.
T Consensus 318 ~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 318 TALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 011389999999977643 3 6999999999999984
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.7e-38 Score=309.89 Aligned_cols=280 Identities=19% Similarity=0.227 Sum_probs=237.6
Q ss_pred ceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010324 215 HAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR 294 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~ 294 (513)
.+++++|+|+|++|++|+.||.++ +||..+++....+. .| ..+....|+|++++|++|+.||.|++||+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~-i~d~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 127 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDF-LFNTIIRDGSKMLK--------RA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSN 127 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEE-EEECCSEETTTTSC--------SC-CEEEEEEECSSSCEEEEEETTSCEEEECTT
T ss_pred cccceeeeecCCeEEEEEcCCcEE-EEEecccceeeEEe--------cC-CceEEEEEecCCCEEEEEECCCCEEEEeCC
Confidence 355799999999999999999996 99998877654332 24 445566789999999999999999999999
Q ss_pred CcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEE
Q 010324 295 SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374 (513)
Q Consensus 295 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 374 (513)
+++....+. .|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|+
T Consensus 128 ~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 128 FNLQREIDQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206 (420)
T ss_dssp SCEEEEETT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred Ccceeeecc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 998887775 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCceeEeecCCCCCCCCCceee---------------------EEEecCCCCCeEEEEcCCCcEEEEEcc-CeEE
Q 010324 375 VWDLKSTDCLQTFKPPPPLRGGDASVN---------------------SVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVV 432 (513)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~~~~~~~v~---------------------~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~ 432 (513)
+||+++++....+.... .+...+. +++|+|++ ..+++++.+|.|++||++ +...
T Consensus 207 iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKE---NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp EEETTTTEEEEEECBTT---BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEE
T ss_pred EeECCCCceeEEeecCC---CCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCcee
Confidence 99999999888876432 2333444 44456665 789999999999999998 4444
Q ss_pred EEeecCccCCCcEEEEEECCCCC-EEEEEecCceEEEEECCCcee-eEeeec-ccCCeEEEEEcCCCCEEEEEECCCeEE
Q 010324 433 KSFSSGKREGGDFVAACVSPKGE-WIYCVGEDRNLYCFSHQSGKL-EHLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMK 509 (513)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~-~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~ 509 (513)
..+.. .+...+.+++|+|++. ++++|+.||.|++||+.+++. +..+.+ |...|+++.| |++.+|++++.||+|+
T Consensus 283 ~~~~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~ 359 (420)
T 3vl1_A 283 IQLPS--KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIK 359 (420)
T ss_dssp EEECC--TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEE
T ss_pred EEccc--ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEE
Confidence 44433 3456799999999999 999999999999999998754 667776 6677888855 5788999999999999
Q ss_pred ecc
Q 010324 510 LWK 512 (513)
Q Consensus 510 iWd 512 (513)
+|+
T Consensus 360 iw~ 362 (420)
T 3vl1_A 360 LDI 362 (420)
T ss_dssp EEE
T ss_pred EEe
Confidence 998
No 48
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.5e-38 Score=297.17 Aligned_cols=281 Identities=16% Similarity=0.237 Sum_probs=240.3
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
-|.+.|.+++|+|||++++++..++.+ +.|......... ...+|...|.+++|+|++++|++++ ||.|++
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~i 76 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDAL-IGPGIPRHARQI--------NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKV 76 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSS-SSTTCCSEEEEE--------EEECCSSCCCEEEECSSSSEEEEEC-BSEEEE
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcE-eccccCCccccc--------eeccCCCceEEEEEecCCcEEEEcC-CCeEEE
Confidence 456789999999999999999888777 376554332211 1235999999999999999999998 999999
Q ss_pred EEcCCcceeeeccc----ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc--eeeEecccccceeEEEEccCCCEE
Q 010324 291 WRIRSGQCLRRLER----AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK--LLKEFRGHSSYVNDAIFTNDGSRV 364 (513)
Q Consensus 291 wd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l 364 (513)
||+.++.....+.. .|...|.+++|+|++++|++++.||.|++||+.+++ ....+..|...|.+++|+|+++++
T Consensus 77 w~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 156 (337)
T 1gxr_A 77 WDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156 (337)
T ss_dssp EETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEE
T ss_pred EECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEE
Confidence 99988764433321 578899999999999999999999999999999887 566778889999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCC
Q 010324 365 VTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGG 443 (513)
Q Consensus 365 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~ 443 (513)
++++.||.|++||+++++....+. .+...+.+++|+|++ ..+++++.++.|++||++ +.....+. +..
T Consensus 157 ~~~~~dg~v~~~d~~~~~~~~~~~------~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~ 225 (337)
T 1gxr_A 157 FSCCSDGNIAVWDLHNQTLVRQFQ------GHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQQHD----FTS 225 (337)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEC------CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE----CSS
T ss_pred EEEeCCCcEEEEeCCCCceeeeee------cccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceEeeec----CCC
Confidence 999999999999999998887775 467789999999987 899999999999999998 44444432 355
Q ss_pred cEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 444 DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 444 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+.+++|+|+++++++++.+|.|++||+.+++.. .+..|...|.+++|+|++++|++++.||.|++||.
T Consensus 226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence 6899999999999999999999999999988764 56789999999999999999999999999999984
No 49
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.4e-37 Score=292.79 Aligned_cols=273 Identities=19% Similarity=0.284 Sum_probs=234.6
Q ss_pred eccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCC
Q 010324 185 LFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD 264 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~ 264 (513)
++.+.......+|+..+....+.+. .|...|.+++|+|+|.++|+|+.|+.++ +|++........ ......+.+|.
T Consensus 79 l~s~s~Dg~v~vWd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~lasg~~d~~i~-v~~~~~~~~~~~--~~~~~~~~~h~ 154 (354)
T 2pbi_B 79 IVSSSQDGKVIVWDSFTTNKEHAVT-MPCTWVMACAYAPSGCAIACGGLDNKCS-VYPLTFDKNENM--AAKKKSVAMHT 154 (354)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCEEEECTTSSEEEEESTTSEEE-EEECCCCTTCCS--GGGCEEEEECS
T ss_pred EEEEeCCCeEEEEECCCCCcceEEe-cCCCCEEEEEECCCCCEEEEeeCCCCEE-EEEEeccccccc--cccceeeeccC
Confidence 4445555667788888888888877 7888999999999999999999999997 999875432111 12233556799
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEcc--CCCEEEEeeCCCcEEEEecCCCcee
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIHGLKSGKLL 342 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 342 (513)
..|.+++|+|++..|++++.|++|++||+.+++.+..+. +|...|.+++|+| ++++|++|+.||.|++||+++++.+
T Consensus 155 ~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~ 233 (354)
T 2pbi_B 155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV 233 (354)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 999999999999999999999999999999999998887 8999999999988 5789999999999999999999999
Q ss_pred eEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcE
Q 010324 343 KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 422 (513)
Q Consensus 343 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 422 (513)
..+..|...|++++|+|++++|++++.|++|++||++++.....+... .+...+.++.|+|++ .++++++.|+.|
T Consensus 234 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~----~~~~~~~~~~~s~~g-~~l~~g~~d~~i 308 (354)
T 2pbi_B 234 QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE----SIIFGASSVDFSLSG-RLLFAGYNDYTI 308 (354)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT----TCCSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC----CcccceeEEEEeCCC-CEEEEEECCCcE
Confidence 999999999999999999999999999999999999988776665432 234578899999987 899999999999
Q ss_pred EEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 423 YIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 423 ~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
++||+. +..+..+. .|...+.+++|+|+|++|++|+.||.|++|+
T Consensus 309 ~vwd~~~~~~~~~l~---~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 309 NVWDVLKGSRVSILF---GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTTCSEEEEEC---CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCceEEEEE---CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999996 55555544 3567899999999999999999999999996
No 50
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.1e-37 Score=313.43 Aligned_cols=315 Identities=17% Similarity=0.246 Sum_probs=249.1
Q ss_pred cccccccCcc----cceeeeeccccCc-eeEEEECC--CCCEEEEEecCCeEEEEEecccc--------ccccccc----
Q 010324 193 KQDVEDMYPT----TLSHTIKFGTKSH-AECARFSP--DGQFLVSCSFDGFIEVVWDYLSG--------KLKKDLQ---- 253 (513)
Q Consensus 193 ~~~~~~~~~~----~~~~~~~~~h~~~-v~~~~~s~--~g~~la~g~~dg~i~~iwd~~~~--------~~~~~~~---- 253 (513)
...+++.... .....+. +|... |++++|+| ++++||+|+.||.|+ +||+.++ .....+.
T Consensus 40 ~v~v~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~-vw~~~~~~~~~~~~~~~~~~~~~~~~ 117 (615)
T 1pgu_A 40 SAFVRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQYLCSGDESGKVI-VWGWTFDKESNSVEVNVKSEFQVLAG 117 (615)
T ss_dssp EEEEEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCCEEEEEETTSEEE-EEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred eEEEEECCCCCCccccceEEe-cCCCceEEEEEECcCCCCCEEEEecCCCEEE-EEeCCCCcccccccccccchhhcccc
Confidence 3445555544 5666665 89999 99999999 999999999999997 9999754 2221111
Q ss_pred ------c--------------------------ccccccccCCccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCcceee
Q 010324 254 ------Y--------------------------QADETFMMHDETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQCLR 300 (513)
Q Consensus 254 ------~--------------------------~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 300 (513)
+ .....+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++.+.
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~ 197 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 197 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE
T ss_pred cEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceee
Confidence 0 01224456788888899998887 79999999999999999999988
Q ss_pred eccccccc---CeEEEEEccC-CCEEEEeeCCCcEEEEecCCCceeeEe-c---ccccceeEEEEccCCCEEEEEeCCCc
Q 010324 301 RLERAHSE---GVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEF-R---GHSSYVNDAIFTNDGSRVVTASSDCT 372 (513)
Q Consensus 301 ~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~dg~ 372 (513)
.+. .|.. .|.+++|+|+ +++|++++.||.|++||+++++.+..+ . .|...|.+++|+ +++++++++.||.
T Consensus 198 ~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 198 SDR-THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT 275 (615)
T ss_dssp EEC-SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSE
T ss_pred eec-ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCc
Confidence 886 7888 9999999999 999999999999999999999999998 6 899999999999 9999999999999
Q ss_pred EEEEeCCCCceeEeecCCC---------------------------------------CCCCC-----------------
Q 010324 373 VKVWDLKSTDCLQTFKPPP---------------------------------------PLRGG----------------- 396 (513)
Q Consensus 373 i~iwd~~~~~~~~~~~~~~---------------------------------------~~~~~----------------- 396 (513)
|++||+++++....+.... ...+|
T Consensus 276 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~ 355 (615)
T 1pgu_A 276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSY 355 (615)
T ss_dssp EEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEET
T ss_pred EEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECC
Confidence 9999999887666554331 00122
Q ss_pred ----------------CceeeEEEecCCC---------------------------------------------------
Q 010324 397 ----------------DASVNSVHLFPKN--------------------------------------------------- 409 (513)
Q Consensus 397 ----------------~~~v~~~~~~~~~--------------------------------------------------- 409 (513)
...+.++.+ +.+
T Consensus 356 dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 434 (615)
T 1pgu_A 356 DGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 434 (615)
T ss_dssp TSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEET
T ss_pred CCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEec
Confidence 223333333 111
Q ss_pred ---------------------CCeEEEEcC-CCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEE
Q 010324 410 ---------------------PDHIVVCNK-TSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLY 467 (513)
Q Consensus 410 ---------------------~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 467 (513)
+..+++++. ++.|++||+....... .....+...+.+++|+|+|++|++|+.||.|+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~ 513 (615)
T 1pgu_A 435 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKIL 513 (615)
T ss_dssp TTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCCeEE
Confidence 233444444 5666666665433322 33344677899999999999999999999999
Q ss_pred EEECCCceeeEeeec-ccCCeEEEEEcC----------CCCEEEEEECCCeEEeccC
Q 010324 468 CFSHQSGKLEHLMKV-HEKDVIGVTHHP----------HRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 468 iwd~~~~~~~~~~~~-h~~~v~~~~~~p----------~~~~l~s~~~dg~i~iWdp 513 (513)
+||+.+++.+..+.+ |...|++++|+| ++++|++++.||.|++||.
T Consensus 514 iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 514 LYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp EEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred EeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence 999999999999888 999999999999 9999999999999999984
No 51
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-38 Score=301.22 Aligned_cols=276 Identities=18% Similarity=0.269 Sum_probs=202.5
Q ss_pred eEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC------CCcEEE
Q 010324 217 ECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ------DGKIKV 290 (513)
Q Consensus 217 ~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~------dg~i~v 290 (513)
..+.+.+++.++.+. .+.... .|++..... ..|...|++++|+|||++|++|+. |+.|++
T Consensus 9 sg~d~g~~~~~~~~~-g~~~~~-~w~~p~~~p------------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~ 74 (357)
T 4g56_B 9 SGVDLGTENLYFQSN-GSSKGS-AWGRPVTAP------------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWV 74 (357)
T ss_dssp ---------------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEE
T ss_pred cCCCCCccceEEecC-CCcccc-ccCCCCCCc------------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEE
Confidence 345566666555444 456665 898754321 249999999999999999999997 778999
Q ss_pred EEcCCcceeeecc---cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceee----EecccccceeEEEEccCCCE
Q 010324 291 WRIRSGQCLRRLE---RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK----EFRGHSSYVNDAIFTNDGSR 363 (513)
Q Consensus 291 wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~ 363 (513)
|+..++.....+. ..|...|.+++|+|++. +++++.||+|++||+.+++... ...+|...|++++|+|++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 153 (357)
T 4g56_B 75 FKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ 153 (357)
T ss_dssp ESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSE
T ss_pred EECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCE
Confidence 9988776443321 25788899999999975 5677889999999998886543 33478899999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCC
Q 010324 364 VVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGG 443 (513)
Q Consensus 364 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 443 (513)
|++++.||.|++||+++++.+..+. +|...|.+++|+|++...+++++.|+.|++||++............+..
T Consensus 154 l~sgs~dg~v~iwd~~~~~~~~~~~------~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~ 227 (357)
T 4g56_B 154 AVSGGKDFSVKVWDLSQKAVLKSYN------AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT 227 (357)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEEC------CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCS
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEc------CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccc
Confidence 9999999999999999999888876 6778999999999987899999999999999998433322223334566
Q ss_pred cEEEEEECCC-CCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCC-CEEEEEECCCeEEeccC
Q 010324 444 DFVAACVSPK-GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR-NLLATYGEDCTMKLWKP 513 (513)
Q Consensus 444 ~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~dg~i~iWdp 513 (513)
.+.+++|+|+ +.++++|+.|+.|++||+.+++.+..+.+|...|++++|+|++ ++|++|+.||+|+|||.
T Consensus 228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 7899999997 5688999999999999999999999999999999999999987 68999999999999984
No 52
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=294.79 Aligned_cols=251 Identities=17% Similarity=0.289 Sum_probs=210.6
Q ss_pred cccccCCc-cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCccee--eecccccccCeEEEEEccCCCEEEEeeCCCcEEEE
Q 010324 258 ETFMMHDE-TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCL--RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIH 334 (513)
Q Consensus 258 ~~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 334 (513)
..+.+|.. .|.+++|+|+|++||+|+.|++|++||+.++... ..+..+|...|.+++|+|++++|++|+.|+.+++|
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence 35567887 9999999999999999999999999999887643 23334799999999999999999999999999999
Q ss_pred ecCCC--ceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCe
Q 010324 335 GLKSG--KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH 412 (513)
Q Consensus 335 d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (513)
|+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||++++........ ..+|...|.+++|+|++ .+
T Consensus 89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~~p~~-~~ 164 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV---LNSHTQDVKHVVWHPSQ-EL 164 (345)
T ss_dssp EECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE---ECCCCSCEEEEEECSSS-SC
T ss_pred EccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE---ecCcCCCeEEEEECCCC-CE
Confidence 98776 45778889999999999999999999999999999999987653322111 12577889999999987 89
Q ss_pred EEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc---------------eee
Q 010324 413 IVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG---------------KLE 477 (513)
Q Consensus 413 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---------------~~~ 477 (513)
+++++.|+.|++|+..............|...+.+++|+|+|++|++|+.||.|++|+.... +++
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 99999999999999985433322233345678999999999999999999999999996322 233
Q ss_pred Eeeec-ccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 478 HLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 478 ~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
..+.+ |...|.+++|+|++..|++++.|+.|++|+
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 34444 888999999999999999999999999996
No 53
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-37 Score=342.94 Aligned_cols=289 Identities=21% Similarity=0.323 Sum_probs=256.5
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 289 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 289 (513)
.+|.+.|++++|+|+|++||+|+.||.|+ +||..+++... .+.+|...|.+++|+|++++|++|+.||.|+
T Consensus 612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~-vw~~~~~~~~~--------~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQRIASCGADKTLQ-VFKAETGEKLL--------DIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEE-EEETTTCCEEE--------EECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ecccccEEEEEECCCCCEEEEEeCCCeEE-EEECCCCCEEE--------EeccCCCCEEEEEEecCCCEEEEEeCCCeEE
Confidence 48999999999999999999999999997 99999887554 3446999999999999999999999999999
Q ss_pred EEEcCCcceeeecccccccCeEEEEEcc--CCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEE
Q 010324 290 VWRIRSGQCLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 367 (513)
+||+.+++.+..+. +|...|.+++|+| ++..+++|+.||.|++||+++++.+..+.+|...|++++|+|++++++++
T Consensus 683 vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~ 761 (1249)
T 3sfz_A 683 IWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASC 761 (1249)
T ss_dssp EEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred EEECCCCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEE
Confidence 99999999999887 8999999999999 55689999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCceeEeecCCCCC-------CCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCc
Q 010324 368 SSDCTVKVWDLKSTDCLQTFKPPPPL-------RGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGK 439 (513)
Q Consensus 368 ~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~ 439 (513)
+.||.|++||++++.....+...... ......+.+++|+|++ ..+++++ ++.+.+||.. +.....+..
T Consensus 762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~-~~~v~~~d~~~~~~~~~~~~-- 837 (1249)
T 3sfz_A 762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG-DKIIVAA-KNKVLLFDIHTSGLLAEIHT-- 837 (1249)
T ss_dssp ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS-SEEEEEE-TTEEEEEETTTCCEEEEEEC--
T ss_pred ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC-CEEEEEc-CCcEEEEEecCCCceeEEcC--
Confidence 99999999999998877766543211 1223468889999987 6666665 6899999998 444444443
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 440 REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 440 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.+...+.+++|+|+++++++++.||.|++||+.++..+..+.+|.+.|++++|+|++.+|++++.||+|++|+
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 2456789999999999999999999999999999999999999999999999999999999999999999997
No 54
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.4e-37 Score=286.57 Aligned_cols=249 Identities=20% Similarity=0.276 Sum_probs=208.3
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC--CCEEEEEeCCCc
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD--SEMLASGSQDGK 287 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~ 287 (513)
.+|.+.|++++|+|+|++||+|+.|++|+ +||+..+.. .....+.+|.++|.+++|+|+ +++|++|+.|++
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~-iw~~~~~~~------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIK-IFEVEGETH------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEE-EEEBCSSCB------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEE-EEecCCCCc------EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 38999999999999999999999999997 999875321 122356789999999999874 899999999999
Q ss_pred EEEEEcCCcc--eeeecccccccCeEEEEEccC--CCEEEEeeCCCcEEEEecCCCce--eeEecccccceeEEEEccC-
Q 010324 288 IKVWRIRSGQ--CLRRLERAHSEGVTSLVFSRD--GSQILSTSFDSTARIHGLKSGKL--LKEFRGHSSYVNDAIFTND- 360 (513)
Q Consensus 288 i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~- 360 (513)
|++||+.+++ .+..+. .|...|.+++|+|+ +.+|++|+.||.|++||++++.. ...+.+|...|.+++|+|+
T Consensus 79 v~iWd~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEEEEBSSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred EEEEEcCCCceEEEEEee-cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence 9999998874 344444 78899999999997 88999999999999999987632 4567789999999999997
Q ss_pred ------------CCEEEEEeCCCcEEEEeCCCCc----eeEeecCCCCCCCCCceeeEEEecCCC--CCeEEEEcCCCcE
Q 010324 361 ------------GSRVVTASSDCTVKVWDLKSTD----CLQTFKPPPPLRGGDASVNSVHLFPKN--PDHIVVCNKTSSI 422 (513)
Q Consensus 361 ------------~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~~~~i 422 (513)
+++|++|+.|+.|++||++++. ....+. +|...|.+++|+|++ +.++++++.|+.|
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~------~H~~~V~~v~~sp~~~~~~~las~s~D~~v 231 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE------GHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC------CCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec------CCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence 5799999999999999998765 333333 688899999999985 5789999999999
Q ss_pred EEEEccCe---EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 423 YIMTLQGQ---VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 423 ~i~d~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
++||++.. ..........+...+.+++|+|+|++|++++.||.|++|+..
T Consensus 232 ~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99999742 122222223446779999999999999999999999999976
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-39 Score=319.20 Aligned_cols=306 Identities=9% Similarity=0.082 Sum_probs=228.3
Q ss_pred ccccccCcccce----eeeeccccCceeEEEECCC------CCEEEEEecCCeEEEEEeccccccccc---ccccccccc
Q 010324 194 QDVEDMYPTTLS----HTIKFGTKSHAECARFSPD------GQFLVSCSFDGFIEVVWDYLSGKLKKD---LQYQADETF 260 (513)
Q Consensus 194 ~~~~~~~~~~~~----~~~~~~h~~~v~~~~~s~~------g~~la~g~~dg~i~~iwd~~~~~~~~~---~~~~~~~~~ 260 (513)
..+|+....... .++. +|.+.|.+++|+|+ +.+||+|+.||+|+ +||+.++..... ....+...+
T Consensus 185 I~iWd~~~~~~~~~~~~~l~-~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvr-lWd~~~~~~~~~~~~~~~~p~~~l 262 (524)
T 2j04_B 185 IQIFKMNTSTLHCVKVQTIV-HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTIN-FLEIIDNATDVHVFKMCEKPSLTL 262 (524)
T ss_dssp EEEEEEETTTCCEEEEEEEE-ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEE-EEECCCCSSSSSEEECCCSCSEEE
T ss_pred EEEEEccCCCCCceEEEEEE-ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEE-EEEcCCCccccccceeecCceEEE
Confidence 345665444332 2233 67889999999997 57999999999998 999987643210 011223456
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCccee-eecccccccCeEEE--EEccCC-CEEEEeeCCCcEEEEec
Q 010324 261 MMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCL-RRLERAHSEGVTSL--VFSRDG-SQILSTSFDSTARIHGL 336 (513)
Q Consensus 261 ~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~i~d~ 336 (513)
.+|...|.+++|+|++ .|++|+.||+|++||+.++... ..+. .|...|.++ +|+|++ .+|++|+.|++|++||+
T Consensus 263 ~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~ 340 (524)
T 2j04_B 263 SLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP 340 (524)
T ss_dssp CCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECG
T ss_pred EcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEee-cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEEC
Confidence 7899999999999864 8999999999999999987543 3444 899999999 578887 89999999999999999
Q ss_pred CCCceeeEeccccc--ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEE
Q 010324 337 KSGKLLKEFRGHSS--YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 414 (513)
Q Consensus 337 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 414 (513)
++++....+.+|.. .|.+++|+|+++.+++++.|++|++||++++.+..++. +|...|++++|+|++ ..++
T Consensus 341 ~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~------gH~~~V~sva~Sp~g-~~l~ 413 (524)
T 2j04_B 341 KDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV------SRETTITAIGVSRLH-PMVL 413 (524)
T ss_dssp GGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE------ECSSCEEEEECCSSC-CBCE
T ss_pred CCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee------cCCCceEEEEeCCCC-CeEE
Confidence 99887777766643 58899999999999999999999999999988766665 678899999999987 7899
Q ss_pred EEcCCCcEEEEEccCeEEEEeecC--ccCCCcEEEEEECCCCCEEEEEecCceEEEEECC-CceeeEeeecccCCeEEEE
Q 010324 415 VCNKTSSIYIMTLQGQVVKSFSSG--KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ-SGKLEHLMKVHEKDVIGVT 491 (513)
Q Consensus 415 ~~~~~~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~ 491 (513)
+|+.|++|++||...+........ ......+..++|+|+|+.+. ... .+.+|+.. ++..+..+.+|.+.|++++
T Consensus 414 Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Va 490 (524)
T 2j04_B 414 AGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTK 490 (524)
T ss_dssp EEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEE
T ss_pred EEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEE
Confidence 999999999999875422111100 00112466899999998552 222 23344332 5677788899999999999
Q ss_pred EcCCCC---EEEEEECCCeEEeccC
Q 010324 492 HHPHRN---LLATYGEDCTMKLWKP 513 (513)
Q Consensus 492 ~~p~~~---~l~s~~~dg~i~iWdp 513 (513)
|+|+++ .+|+|+.||.|+||++
T Consensus 491 fsp~~~~~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 491 WNETSAGGKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp ECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred CCCCCCccHHHHhhccCceEEEEEc
Confidence 999864 9999999999999985
No 56
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-37 Score=328.86 Aligned_cols=287 Identities=22% Similarity=0.336 Sum_probs=252.2
Q ss_pred eeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
.+.+. +|.+.|.+++|+|+|++||+|+.||.|+ +||+.++..... +.+|..+|.+++|+|++++|++|+.
T Consensus 6 ~~~~~-~h~~~v~~i~~sp~~~~la~~~~~g~v~-iwd~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~ 75 (814)
T 3mkq_A 6 KKTFS-NRSDRVKGIDFHPTEPWVLTTLYSGRVE-IWNYETQVEVRS--------IQVTETPVRAGKFIARKNWIIVGSD 75 (814)
T ss_dssp EEEEE-EECSCEEEEEECSSSSEEEEEETTSEEE-EEETTTTEEEEE--------EECCSSCEEEEEEEGGGTEEEEEET
T ss_pred ceeee-cCCCceEEEEECCCCCEEEEEeCCCEEE-EEECCCCceEEE--------EecCCCcEEEEEEeCCCCEEEEEeC
Confidence 34554 8999999999999999999999999996 999988776543 3459999999999999999999999
Q ss_pred CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC-ceeeEecccccceeEEEEcc-CCC
Q 010324 285 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTN-DGS 362 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~ 362 (513)
||.|++||+.+++.+..+. .|...|.+++|+|++++|++++.||.|++||+.++ .....+.+|...|.+++|+| +++
T Consensus 76 dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 154 (814)
T 3mkq_A 76 DFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (814)
T ss_dssp TSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE
T ss_pred CCeEEEEECCCCcEEEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC
Confidence 9999999999999988886 89999999999999999999999999999999887 66778888999999999999 889
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecC--CCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCc
Q 010324 363 RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP--KNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGK 439 (513)
Q Consensus 363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~ 439 (513)
.+++++.||.|++||+.++.....+.. .+...+..++|+| ++ ..+++++.++.|++||+. +.....+..
T Consensus 155 ~l~~~~~dg~v~vwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~-- 226 (814)
T 3mkq_A 155 TFASGCLDRTVKVWSLGQSTPNFTLTT-----GQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEG-- 226 (814)
T ss_dssp EEEEEETTSEEEEEETTCSSCSEEEEC-----CCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEEEEEEEC--
T ss_pred EEEEEeCCCeEEEEECCCCcceeEEec-----CCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEcC--
Confidence 999999999999999998877666653 2346889999999 55 899999999999999998 455554443
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCC--EEEEEECCCeEEecc
Q 010324 440 REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN--LLATYGEDCTMKLWK 512 (513)
Q Consensus 440 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~s~~~dg~i~iWd 512 (513)
+...+.+++|+|+++++++++.||.|++||..+++.+..+..|...+.+++|+|++. ++++++ |+.+.+|+
T Consensus 227 -~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 227 -HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp -CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred -CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 456799999999999999999999999999999999999999999999999999986 455555 56677775
No 57
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.6e-37 Score=287.69 Aligned_cols=249 Identities=23% Similarity=0.435 Sum_probs=214.2
Q ss_pred eeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
.+.+. +|...|.+++|+|+|++|++|+.|++|+ +||+.+++... .+.+|...|.+++|+|++.+|++|+.
T Consensus 58 ~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~v~-~wd~~~~~~~~--------~~~~h~~~v~~~~~~~~~~~l~s~s~ 127 (319)
T 3frx_A 58 VRSFK-GHSHIVQDCTLTADGAYALSASWDKTLR-LWDVATGETYQ--------RFVGHKSDVMSVDIDKKASMIISGSR 127 (319)
T ss_dssp EEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTTEEEE--------EEECCSSCEEEEEECTTSCEEEEEET
T ss_pred ceEEe-CCcccEEEEEECCCCCEEEEEeCCCEEE-EEECCCCCeeE--------EEccCCCcEEEEEEcCCCCEEEEEeC
Confidence 44555 9999999999999999999999999998 99999887543 44569999999999999999999999
Q ss_pred CCcEEEEEcCCcceeeecccccccCeEEEEEccC------CCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEc
Q 010324 285 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD------GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT 358 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 358 (513)
|++|++||+. +.++..+. +|...|.+++|+|. +..+++++.|+.|++||+++++....+.+|...|.+++|+
T Consensus 128 D~~i~vwd~~-~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~s 205 (319)
T 3frx_A 128 DKTIKVWTIK-GQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205 (319)
T ss_dssp TSCEEEEETT-SCEEEEEC-CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEEC
T ss_pred CCeEEEEECC-CCeEEEEe-ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEc
Confidence 9999999986 45666665 79999999999985 4589999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEE-EEeec
Q 010324 359 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV-KSFSS 437 (513)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~ 437 (513)
|+|++|++++.||.|++||+++++.+..+.. ...+.+++|+|++ ..+++++. +.+++|+++.... ..+..
T Consensus 206 p~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~v~~~~~sp~~-~~la~~~~-~~i~v~~~~~~~~~~~~~~ 276 (319)
T 3frx_A 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-------QDEVFSLAFSPNR-YWLAAATA-TGIKVFSLDPQYLVDDLRP 276 (319)
T ss_dssp TTSSEEEEEETTCEEEEEETTTTEEEEEEEC-------CSCEEEEEECSSS-SEEEEEET-TEEEEEEETTEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEecC-------CCcEEEEEEcCCC-CEEEEEcC-CCcEEEEeCcCeeeeccCc
Confidence 9999999999999999999999998888753 3479999999987 66666654 4599999985443 33322
Q ss_pred C-----ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc
Q 010324 438 G-----KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 438 ~-----~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 474 (513)
. ..+...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus 277 ~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 1 123556889999999999999999999999998764
No 58
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.4e-37 Score=285.59 Aligned_cols=248 Identities=20% Similarity=0.242 Sum_probs=206.8
Q ss_pred ccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC--cceeeecccccccCeEEEEEcc--CCCEEEEeeCCCcEEEE
Q 010324 259 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS--GQCLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIH 334 (513)
Q Consensus 259 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~ 334 (513)
.+.+|...|.+++|+|+|++||+|+.|++|++||+.+ ++.+..+. +|..+|.+++|+| ++++|++|+.||+|++|
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 3457999999999999999999999999999999974 35667776 8999999999986 48999999999999999
Q ss_pred ecCCCc--eeeEecccccceeEEEEccC--CCEEEEEeCCCcEEEEeCCCCcee--EeecCCCCCCCCCceeeEEEecCC
Q 010324 335 GLKSGK--LLKEFRGHSSYVNDAIFTND--GSRVVTASSDCTVKVWDLKSTDCL--QTFKPPPPLRGGDASVNSVHLFPK 408 (513)
Q Consensus 335 d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~ 408 (513)
|+++++ .+..+..|...|.+++|+|+ +.+|++++.||.|++||++++... ..+ .+|...+.+++|+|.
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~------~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII------DAHAIGVNSASWAPA 156 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE------ECCSSCEEEEEECCC
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee------ecccCccceEeecCC
Confidence 998874 55677889999999999997 889999999999999999876421 222 267789999999997
Q ss_pred C------------CCeEEEEcCCCcEEEEEccC-e-EEEEeecCccCCCcEEEEEECCCC---CEEEEEecCceEEEEEC
Q 010324 409 N------------PDHIVVCNKTSSIYIMTLQG-Q-VVKSFSSGKREGGDFVAACVSPKG---EWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 409 ~------------~~~l~~~~~~~~i~i~d~~~-~-~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~g~~dg~i~iwd~ 471 (513)
. ...+++++.|+.|++||++. . ..........|...|.+++|+|++ .+|++|+.|+.|++||+
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 3 36899999999999999973 2 111222223466789999999985 89999999999999999
Q ss_pred CCce---eeEee--ecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 472 QSGK---LEHLM--KVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 472 ~~~~---~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.++. ....+ ..|...|.+++|+|++++||+++.||+|++|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 7743 12233 467889999999999999999999999999973
No 59
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.4e-36 Score=298.59 Aligned_cols=295 Identities=21% Similarity=0.401 Sum_probs=259.0
Q ss_pred CcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccE
Q 010324 188 GTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETV 267 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v 267 (513)
+.......+|+.........+. +|.+.|++++|+ ++++++|+.||.|+ +||+.+++... .+.+|...|
T Consensus 135 g~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~~~dg~i~-vwd~~~~~~~~--------~~~~h~~~v 202 (445)
T 2ovr_B 135 GSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMR--DNIIISGSTDRTLK-VWNAETGECIH--------TLYGHTSTV 202 (445)
T ss_dssp EETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEE--TTEEEEEETTSCEE-EEETTTTEEEE--------EECCCSSCE
T ss_pred EECCCcEEEEECCCCcEEEEEc-CCCCCEEEEEec--CCEEEEEeCCCeEE-EEECCcCcEEE--------EECCCCCcE
Confidence 3334455677777777777776 999999999998 66999999999997 99999886554 344699999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecc
Q 010324 268 LCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG 347 (513)
Q Consensus 268 ~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 347 (513)
.+++|+ ++.+++|+.||.|++||+.+++.+..+. .|...|.+++| ++.++++|+.||.|++||+++++.+..+.+
T Consensus 203 ~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 277 (445)
T 2ovr_B 203 RCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG 277 (445)
T ss_dssp EEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred EEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC
Confidence 999996 5689999999999999999999988886 89999999999 788999999999999999999999999999
Q ss_pred cccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEc
Q 010324 348 HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL 427 (513)
Q Consensus 348 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~ 427 (513)
|...|.++.| ++.++++++.||.|++||+++++.+..+. ++...+.++.+.+ ..+++++.||.|++||+
T Consensus 278 ~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 278 HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT------GHQSLTSGMELKD---NILVSGNADSTVKIWDI 346 (445)
T ss_dssp CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC------CCCSCEEEEEEET---TEEEEEETTSCEEEEET
T ss_pred CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc------CCcccEEEEEEeC---CEEEEEeCCCeEEEEEC
Confidence 9999999999 78899999999999999999999888775 4566788887743 79999999999999999
Q ss_pred c-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEee-----ecccCCeEEEEEcCCCCEEEE
Q 010324 428 Q-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM-----KVHEKDVIGVTHHPHRNLLAT 501 (513)
Q Consensus 428 ~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~l~s 501 (513)
+ +.....+.....+...+.+++++ ++++++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++.++++
T Consensus 347 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~ 424 (445)
T 2ovr_B 347 KTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 424 (445)
T ss_dssp TTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred CCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEE
Confidence 7 66677776655577889999995 689999999999999999999988887 478889999999999999999
Q ss_pred EECCCe----EEecc
Q 010324 502 YGEDCT----MKLWK 512 (513)
Q Consensus 502 ~~~dg~----i~iWd 512 (513)
|+.||+ |.|||
T Consensus 425 ~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 425 GSRNGTEETKLLVLD 439 (445)
T ss_dssp ECSSSSSCCEEEEEE
T ss_pred cccCCCCccEEEEEE
Confidence 999998 99997
No 60
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.1e-38 Score=295.87 Aligned_cols=280 Identities=15% Similarity=0.222 Sum_probs=237.1
Q ss_pred eccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCC-EEEEEeCCCc
Q 010324 209 KFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQDGK 287 (513)
Q Consensus 209 ~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~ 287 (513)
..+|.+.|++++|+|++++|++|+.||.|+ +|++.++...... ..+.+|...|.+++|+|+++ +|++|+.||.
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~-iw~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLT-VYKFDIQAKNVDL-----LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEE-EEEEETTTTEEEE-----EEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEE-EEEeCCCCccccc-----eeeeecCCceEEEEECCCCCcEEEEEcCCCe
Confidence 348999999999999999999999999997 9999876521111 12336999999999999999 9999999999
Q ss_pred EEEEEc-CCcceeeecccc--cccCeEEEEEccCCCEEEEeeCCCcEEEEecCC---------CceeeEecccccceeEE
Q 010324 288 IKVWRI-RSGQCLRRLERA--HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS---------GKLLKEFRGHSSYVNDA 355 (513)
Q Consensus 288 i~vwd~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~v~~~ 355 (513)
|++||+ .+++. ..+. . |...|.+++|+| +..+++++.|+.|++||+++ ++.+..+. |...|.++
T Consensus 81 i~~wd~~~~~~~-~~~~-~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 156 (342)
T 1yfq_A 81 ILKVDLIGSPSF-QALT-NNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM 156 (342)
T ss_dssp EEEECSSSSSSE-EECB-SCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred EEEEEeccCCce-Eecc-ccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence 999999 87765 4554 6 999999999999 99999999999999999988 77777776 88899999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCC-CceeEeecCCCCCCCCCceeeEEEecC-CCCCeEEEEcCCCcEEEEEccC----
Q 010324 356 IFTNDGSRVVTASSDCTVKVWDLKS-TDCLQTFKPPPPLRGGDASVNSVHLFP-KNPDHIVVCNKTSSIYIMTLQG---- 429 (513)
Q Consensus 356 ~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~~~~i~i~d~~~---- 429 (513)
+|+|++ +++++.||.|++||+++ +....... ...+...+.+++|+| ++ ..+++++.+|.+++|+++.
T Consensus 157 ~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~ 229 (342)
T 1yfq_A 157 DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE----ESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDD 229 (342)
T ss_dssp EECSSE--EEEEESTTEEEEEESSCCTTCCCEEE----ECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCS
T ss_pred EecCCc--EEEEeCCCeEEEEECCccccccceee----ecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcc
Confidence 999987 99999999999999998 54321111 114567899999999 76 8999999999999999973
Q ss_pred ---eEEEEeecCcc------CCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc-cCCeEEEEEcCCCCEE
Q 010324 430 ---QVVKSFSSGKR------EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH-EKDVIGVTHHPHRNLL 499 (513)
Q Consensus 430 ---~~~~~~~~~~~------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l 499 (513)
.....+..+.. +...+.+++|+|++++|++|+.||.|++||+.+++.+..+.+| .++|++++ |++.+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l 307 (342)
T 1yfq_A 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNIL 307 (342)
T ss_dssp TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEE
T ss_pred cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeE
Confidence 33344433221 2448999999999999999999999999999999999999998 99999999 999999
Q ss_pred EEEECCCe
Q 010324 500 ATYGEDCT 507 (513)
Q Consensus 500 ~s~~~dg~ 507 (513)
++++.||+
T Consensus 308 ~s~s~Dg~ 315 (342)
T 1yfq_A 308 CLATSDDT 315 (342)
T ss_dssp EEEEECTH
T ss_pred EEEecCCc
Confidence 99999998
No 61
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=305.18 Aligned_cols=297 Identities=15% Similarity=0.246 Sum_probs=229.9
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccc---cccccccccccccCC------------ccEEEEEEcC
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLK---KDLQYQADETFMMHD------------ETVLCIEFSR 274 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~---~~~~~~~~~~~~~h~------------~~v~~l~~~~ 274 (513)
..|.+.|+|++|+|+|++||+|+.||.|+ +||+.++... ....+.....+.+|. ..|.+++|+|
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~-iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVV-IFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEE-EEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEE-EEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 36789999999999999999999999997 9999876521 111122334566787 8899999999
Q ss_pred CC--CEEEEEeCCCcEEEEEcCCccee---------------------------------------eecccccccCeEEE
Q 010324 275 DS--EMLASGSQDGKIKVWRIRSGQCL---------------------------------------RRLERAHSEGVTSL 313 (513)
Q Consensus 275 ~~--~~l~s~~~dg~i~vwd~~~~~~~---------------------------------------~~~~~~~~~~v~~~ 313 (513)
++ ..|++++.||.|++||+.++... ..+..+|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 79999999999999999875432 12234789999999
Q ss_pred EEccCCCEEEEeeCCCcEEEEecCCC-ceee-------EecccccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCce-
Q 010324 314 VFSRDGSQILSTSFDSTARIHGLKSG-KLLK-------EFRGHSSYVNDAIFTNDG-SRVVTASSDCTVKVWDLKSTDC- 383 (513)
Q Consensus 314 ~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~- 383 (513)
+|+|++++|++| .||.|++||++++ +.+. .+.+|...|.+++|+|++ ++|++++.||.|++||+++++.
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 999999999998 7999999999844 4443 356789999999999998 9999999999999999998875
Q ss_pred ---eEeecCCCCC------CCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeEEEEeecCccCCC---------
Q 010324 384 ---LQTFKPPPPL------RGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKREGG--------- 443 (513)
Q Consensus 384 ---~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~~--------- 443 (513)
...+...... ..+...+.+++|+|++ .++++++. +.|++||++ +..+..+..+.....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 4555422100 0111389999999977 88888888 999999997 344444433221111
Q ss_pred ---cEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeee---------------------------------cccCCe
Q 010324 444 ---DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK---------------------------------VHEKDV 487 (513)
Q Consensus 444 ---~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---------------------------------~h~~~v 487 (513)
.+..++|+|++++|++|+.||.|++||+.+++.+. +. .+...|
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 419 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKI 419 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCce
Confidence 13348999999999999999999999999887653 22 234568
Q ss_pred EEEEEcCCCCEEEEEECCCeEEecc
Q 010324 488 IGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 488 ~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.+++|+|++++||+++.++ +++|.
T Consensus 420 ~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 420 LHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CEEEECSSSSEEEEECSSC-EEEEE
T ss_pred eEEEECCCCCEEEEEecce-eeeec
Confidence 8999999999999998876 77764
No 62
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.9e-37 Score=285.55 Aligned_cols=247 Identities=27% Similarity=0.421 Sum_probs=220.5
Q ss_pred ccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEec
Q 010324 257 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 336 (513)
Q Consensus 257 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 336 (513)
...+.+|...|.+++|+|++++|++|+.||.|++|++.+++....+. .|...|.+++|+|++++|++|+.||.|++||+
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 34667899999999999999999999999999999999999888886 89999999999999999999999999999999
Q ss_pred CCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE
Q 010324 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 416 (513)
++++.+..+.+|...|.+++|+|+++++++++.||.|++||+++++....+. .|...+.++.|+|++ ..++++
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~-~~l~~~ 167 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP------AHSDPVSAVHFNRDG-SLIVSS 167 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC------CCSSCEEEEEECTTS-SEEEEE
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec------CCCCcEEEEEEcCCC-CEEEEE
Confidence 9999999999999999999999999999999999999999999998887775 567789999999987 899999
Q ss_pred cCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEE--EEEc
Q 010324 417 NKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG--VTHH 493 (513)
Q Consensus 417 ~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~--~~~~ 493 (513)
+.|+.|++||+. +..+..+.. .+...+..++|+|+++++++++.||.|++||+.+++.+..+.+|...+.+ ..++
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECC--SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred eCCCcEEEEECCCCceeeEEec--cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 999999999998 444444433 23557889999999999999999999999999999999999888765432 2344
Q ss_pred -CCCCEEEEEECCCeEEeccC
Q 010324 494 -PHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 494 -p~~~~l~s~~~dg~i~iWdp 513 (513)
+++.+|++|+.||.|++||.
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEET
T ss_pred eCCCcEEEEECCCCEEEEEEC
Confidence 57889999999999999984
No 63
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.1e-37 Score=340.15 Aligned_cols=304 Identities=22% Similarity=0.358 Sum_probs=263.1
Q ss_pred ccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEE
Q 010324 192 MKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIE 271 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 271 (513)
....+|+........++. +|.+.|.+++|+|+|++||+|+.||.|+ +||+.+++.... +.+|...|.+++
T Consensus 637 ~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~-vwd~~~~~~~~~--------~~~~~~~v~~~~ 706 (1249)
T 3sfz_A 637 KTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVK-IWDSATGKLVHT--------YDEHSEQVNCCH 706 (1249)
T ss_dssp SCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTCCEEEE--------EECCSSCEEEEE
T ss_pred CeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEE-EEECCCCceEEE--------EcCCCCcEEEEE
Confidence 445567777777778877 9999999999999999999999999997 999998876543 446999999999
Q ss_pred EcC--CCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe----
Q 010324 272 FSR--DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF---- 345 (513)
Q Consensus 272 ~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---- 345 (513)
|+| ++.++++|+.||.|++||+.+++.+..+. +|...|.+++|+|+++++++++.||.|++||+.+++....+
T Consensus 707 ~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 785 (1249)
T 3sfz_A 707 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785 (1249)
T ss_dssp ECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC-CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCC
T ss_pred EecCCCceEEEEEeCCCeEEEEECCCcchhheec-CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccc
Confidence 999 55689999999999999999999988887 89999999999999999999999999999999776543322
Q ss_pred ---------------------------------------------------cccccceeEEEEccCCCEEEEEeCCCcEE
Q 010324 346 ---------------------------------------------------RGHSSYVNDAIFTNDGSRVVTASSDCTVK 374 (513)
Q Consensus 346 ---------------------------------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 374 (513)
.+|...|.+++|+|+++++++++.||.|+
T Consensus 786 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~ 865 (1249)
T 3sfz_A 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE 865 (1249)
T ss_dssp CC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEE
T ss_pred cccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEE
Confidence 15677899999999999999999999999
Q ss_pred EEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe----------E-------------
Q 010324 375 VWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ----------V------------- 431 (513)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----------~------------- 431 (513)
+||+.++.....+. +|...|.+++|+|++ ..+++++.|+.+++|++... .
T Consensus 866 vwd~~~~~~~~~~~------~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1249)
T 3sfz_A 866 LWNIDSRLKVADCR------GHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938 (1249)
T ss_dssp EEETTTTEEEEEEC------CCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEE
T ss_pred EEEcCCCceeeecC------CCccceEEEEECCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEE
Confidence 99999998887775 678899999999987 88999999999999997521 0
Q ss_pred -------EEEeecC-----ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEE
Q 010324 432 -------VKSFSSG-----KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLL 499 (513)
Q Consensus 432 -------~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 499 (513)
....... ......+.+++++|+++++++|+.+|.|++||+.+++....+.+|.+.|++++|+|++++|
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1018 (1249)
T 3sfz_A 939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018 (1249)
T ss_dssp EEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCE
T ss_pred EecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEE
Confidence 0000000 0123568899999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCeEEeccC
Q 010324 500 ATYGEDCTMKLWKP 513 (513)
Q Consensus 500 ~s~~~dg~i~iWdp 513 (513)
++++.||.|++||.
T Consensus 1019 ~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A 1019 ISSSEDSVIQVWNW 1032 (1249)
T ss_dssp EEECSSSBEEEEET
T ss_pred EEEcCCCEEEEEEC
Confidence 99999999999984
No 64
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.3e-37 Score=297.16 Aligned_cols=287 Identities=19% Similarity=0.301 Sum_probs=238.2
Q ss_pred eccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCC
Q 010324 185 LFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD 264 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~ 264 (513)
++.+.......+|+.......+.+. +|...|.+++|+|+|++||+|+.|+.++ +|++.+..... -.......+.+|.
T Consensus 81 l~s~s~D~~v~iWd~~~~~~~~~~~-~h~~~v~~~~~s~~g~~las~~~d~~v~-iw~~~~~~~~~-~~~~~~~~~~gh~ 157 (380)
T 3iz6_a 81 IVSASQDGRLIVWNALTSQKTHAIK-LHCPWVMECAFAPNGQSVACGGLDSACS-IFNLSSQADRD-GNMPVSRVLTGHK 157 (380)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CCCTTCCCCEECTTSSEEEECCSSSCCE-EEECCCCSSCC-CSSTTCCBCCCCS
T ss_pred EEEEeCCCeEEEEECCCCccceEEe-cCCCCEEEEEECCCCCEEEEeeCCCcEE-EEECCCCcccc-CCccceeeccCCC
Confidence 3444455567788888888888887 8999999999999999999999999997 99987643211 1112334677899
Q ss_pred ccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCcceeeecc----cccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecC-
Q 010324 265 ETVLCIEFSRD-SEMLASGSQDGKIKVWRIRSGQCLRRLE----RAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLK- 337 (513)
Q Consensus 265 ~~v~~l~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~- 337 (513)
+.|.++.|+|+ +..|++|+.|++|++||+.+++.+..+. .+|...|.+++|++ ++++|++|+.||.|++||++
T Consensus 158 ~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~ 237 (380)
T 3iz6_a 158 GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237 (380)
T ss_dssp SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence 99999999996 4579999999999999999998877652 36889999999987 88999999999999999998
Q ss_pred CCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCC-CCCCceeeEEEecCCCCCeEEEE
Q 010324 338 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPL-RGGDASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 338 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~ 416 (513)
.++.+..+.+|...|.+++|+|++++|++++.||+|++||++++..+..+...... ..+...+.+++|+|++ .+++++
T Consensus 238 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g 316 (380)
T 3iz6_a 238 TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAG 316 (380)
T ss_dssp TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEE
T ss_pred CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC-CEEEEE
Confidence 45778889999999999999999999999999999999999999888777543321 2233458999999988 899999
Q ss_pred cCCCcEEEEEcc-CeEEEEeec-CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce
Q 010324 417 NKTSSIYIMTLQ-GQVVKSFSS-GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK 475 (513)
Q Consensus 417 ~~~~~i~i~d~~-~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 475 (513)
+.||.|++||.. +.....+.. ...|...|.+++|+|+|++|++|+.||.|++|++...+
T Consensus 317 ~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 317 YSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999999987 444444432 23467789999999999999999999999999987653
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.9e-37 Score=289.82 Aligned_cols=251 Identities=18% Similarity=0.214 Sum_probs=204.8
Q ss_pred ccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc--eeeecccccccCeEEEEEcc--CCCEEEEeeCCCcEEEE
Q 010324 259 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ--CLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIH 334 (513)
Q Consensus 259 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~ 334 (513)
.+.+|.+.|++++|+|+|++|++|+.|++|++||+.++. .+..+. +|...|.+++|+| ++++|++|+.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 345799999999999999999999999999999998775 345565 8999999999986 48999999999999999
Q ss_pred ecCCCc--eeeEecccccceeEEEEccC--CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC-
Q 010324 335 GLKSGK--LLKEFRGHSSYVNDAIFTND--GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN- 409 (513)
Q Consensus 335 d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 409 (513)
|+++++ ....+.+|...|.+++|+|+ +.+|++++.||.|++||++.+...... ....+|...+.++.|+|+.
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK---KINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC---CBTTSSSSCBCCCEECCCCC
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee---eeeccccCCcceEEEccccC
Confidence 998873 56678889999999999997 789999999999999999876422111 1223677889999999873
Q ss_pred ---------------CCeEEEEcCCCcEEEEEccC-eEEEEeecCccCCCcEEEEEECCCC----CEEEEEecCceEEEE
Q 010324 410 ---------------PDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSPKG----EWIYCVGEDRNLYCF 469 (513)
Q Consensus 410 ---------------~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~g~~dg~i~iw 469 (513)
...+++++.|+.|++||++. ...........|...+.+++|+|++ .+|++|+.||+|++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 26899999999999999973 2222233334567789999999987 899999999999999
Q ss_pred ECCCc---e-eeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 470 SHQSG---K-LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 470 d~~~~---~-~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
++.+. . ....+..|.+.|.+++|+|++++|++++.||+|++|++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 98763 1 23445678999999999999999999999999999973
No 66
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.2e-37 Score=293.54 Aligned_cols=297 Identities=16% Similarity=0.197 Sum_probs=237.8
Q ss_pred ccCcccceeeeeccccCceeEEEECCC---CCEEEEEecCCeEEEEEeccc-cccccccccccccccccCCccEEEEEEc
Q 010324 198 DMYPTTLSHTIKFGTKSHAECARFSPD---GQFLVSCSFDGFIEVVWDYLS-GKLKKDLQYQADETFMMHDETVLCIEFS 273 (513)
Q Consensus 198 ~~~~~~~~~~~~~~h~~~v~~~~~s~~---g~~la~g~~dg~i~~iwd~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 273 (513)
...|....+.+. +|.+.|+|++|+|+ |++|++|+.||.|+ +||+.+ +... ...+.+|...|.+++|+
T Consensus 25 ~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~-iw~~~~~~~~~-------~~~~~~h~~~v~~~~~~ 95 (368)
T 3mmy_A 25 NHNPMKDIEVTS-SPDDSIGCLSFSPPTLPGNFLIAGSWANDVR-CWEVQDSGQTI-------PKAQQMHTGPVLDVCWS 95 (368)
T ss_dssp SSCTTCCEECSS-CCSSCEEEEEECCTTSSSEEEEEEETTSEEE-EEEECTTSCEE-------EEEEEECSSCEEEEEEC
T ss_pred CCCCcceeEecc-CCCCceEEEEEcCCCCCceEEEEECCCCcEE-EEEcCCCCcee-------EEEeccccCCEEEEEEC
Confidence 344555555554 99999999999999 69999999999997 999987 3322 12445699999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEE--ccCCCEEEEeeCCCcEEEEecCCCceeeEecccccc
Q 010324 274 RDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF--SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSY 351 (513)
Q Consensus 274 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 351 (513)
|++++|++++.||.|++||+.+++.+... .|...|.+++| +|++.+|++++.||.|++||+++++.+..+..+. .
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~ 172 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQAIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-R 172 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-C
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCceeec--cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-C
Confidence 99999999999999999999999877644 69999999999 8899999999999999999999999888888665 4
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC---CCeEEEEcCCCcEEEEEcc
Q 010324 352 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN---PDHIVVCNKTSSIYIMTLQ 428 (513)
Q Consensus 352 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~~i~i~d~~ 428 (513)
+.++.+. +..+++++.++.+.+||++........... ........+.+.+.. +..+++++.++.|++|+++
T Consensus 173 ~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 173 CYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIES----PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN 246 (368)
T ss_dssp EEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCC----SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS
T ss_pred ceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccc----cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC
Confidence 6666665 458899999999999999876544332211 122334444444332 2349999999999999998
Q ss_pred Ce----EEEEeecCcc---------CCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCC
Q 010324 429 GQ----VVKSFSSGKR---------EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 495 (513)
Q Consensus 429 ~~----~~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~ 495 (513)
.. ....+..+.. +...+.+++|+|++++|++|+.||.|++||+.+++++..+.+|..+|++++|+|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 326 (368)
T 3mmy_A 247 PPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHN 326 (368)
T ss_dssp CSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTT
T ss_pred CCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCC
Confidence 42 2333333221 1126999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECCCeEEecc
Q 010324 496 RNLLATYGEDCTMKLWK 512 (513)
Q Consensus 496 ~~~l~s~~~dg~i~iWd 512 (513)
+.+|++++.|+..+.|+
T Consensus 327 g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 327 GNIFAYASSYDWSKGHE 343 (368)
T ss_dssp SSCEEEEECCCSTTCGG
T ss_pred CCeEEEEeccccccccc
Confidence 99999999988655543
No 67
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.4e-37 Score=290.47 Aligned_cols=295 Identities=16% Similarity=0.186 Sum_probs=221.8
Q ss_pred eeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC--CCCEEEEEeC
Q 010324 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGSQ 284 (513)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~ 284 (513)
.+..+|.+.|++++|+|++++||+|+.||.|+ +||+.++.... .....+.+|...|.+++|+| ++++|++|+.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~-iw~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIK-VFKLDKDTSNW----ELSDSWRAHDSSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEE-EEEECSSSCCE----EEEEEEECCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEE-EEECCCCCCcc----eecceeccCCCcEEEEEEcCCCCCCEEEEEcC
Confidence 34459999999999999999999999999997 99998764322 12235567999999999999 6999999999
Q ss_pred CCcEEEEEcCCc---------ceeeecccccccCeEEEEEccC--CCEEEEeeCCCcEEEEecCCCceeeEec-------
Q 010324 285 DGKIKVWRIRSG---------QCLRRLERAHSEGVTSLVFSRD--GSQILSTSFDSTARIHGLKSGKLLKEFR------- 346 (513)
Q Consensus 285 dg~i~vwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~------- 346 (513)
||.|++||+.++ +.+..+. .|...|.+++|+|+ +.++++++.||.|++||+++++.+..+.
T Consensus 80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp TSCEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred CCeEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence 999999999887 4455665 78999999999999 9999999999999999999887654433
Q ss_pred ------ccccceeEEEEccC---CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCC---CeEE
Q 010324 347 ------GHSSYVNDAIFTND---GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP---DHIV 414 (513)
Q Consensus 347 ------~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~ 414 (513)
.+...+.+++|+|+ +..+++++.++.+.+|+...+....... ..+|...|.+++|+|+++ .+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK----LPGHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEE----CCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeee----cCCCCcceeEEEECCCCCCcceEEE
Confidence 57778999999997 8999999999999888887776522222 226788999999999874 6899
Q ss_pred EEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEE----ecCceEEEEECCCceeeEeeecccCCeEEE
Q 010324 415 VCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCV----GEDRNLYCFSHQSGKLEHLMKVHEKDVIGV 490 (513)
Q Consensus 415 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 490 (513)
+++.|+.|++||++.......... ..........++.......+ ...+.+.+|+....+.+..+.+|.+.|+++
T Consensus 235 s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 312 (351)
T 3f3f_A 235 TGCKDGRIRIFKITEKLSPLASEE--SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV 312 (351)
T ss_dssp EEETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEE
T ss_pred EEcCCCeEEEEeCCCCcCccccCC--cccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEE
Confidence 999999999999984322111111 11112233333333333333 345567777777888889999999999999
Q ss_pred EEcCCCCEEEEEECCCeEEeccC
Q 010324 491 THHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 491 ~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+|+|++++|++++.||.|+|||.
T Consensus 313 ~~s~~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 313 SWNLTGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp EECSSSCCEEEEETTSCEEEEEE
T ss_pred EEcCCCCEEEEecCCCcEEEEec
Confidence 99999999999999999999983
No 68
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-36 Score=283.31 Aligned_cols=245 Identities=20% Similarity=0.331 Sum_probs=199.9
Q ss_pred cccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCc--ceeeecccc-cccCeEEEEEccCCCEEEEeeCCCcEEEE
Q 010324 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG--QCLRRLERA-HSEGVTSLVFSRDGSQILSTSFDSTARIH 334 (513)
Q Consensus 258 ~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 334 (513)
..+.+|...|.+++|+|+ +|++|+.|+.|++||+.++ .....+... |...|.+++|+|++++|++|+.|++|++|
T Consensus 8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 456679999999999988 9999999999999999875 344444224 89999999999999999999999999999
Q ss_pred ecCC-------CceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC----ceeEeecCCCCCCCCCceeeEE
Q 010324 335 GLKS-------GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST----DCLQTFKPPPPLRGGDASVNSV 403 (513)
Q Consensus 335 d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
|+.. .+.+..+.+|...|.+++|+|++++|++++.|++|++||++.. +++..+. +|...|.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~------~h~~~v~~v 159 (330)
T 2hes_X 86 AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ------EHSQDVKHV 159 (330)
T ss_dssp EC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC------CCSSCEEEE
T ss_pred EcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec------cCCCceEEE
Confidence 9853 3456778899999999999999999999999999999999532 2334443 678899999
Q ss_pred EecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCC--CCEEEEEecCceEEEEECCCc-------
Q 010324 404 HLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPK--GEWIYCVGEDRNLYCFSHQSG------- 474 (513)
Q Consensus 404 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~g~~dg~i~iwd~~~~------- 474 (513)
.|+|++ .++++++.|+.|++||..............|...+.+++|+|+ +.++++|+.|+.|++||+.++
T Consensus 160 ~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 160 IWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp EECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred EECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence 999987 8999999999999999874322222222345678999999998 779999999999999998765
Q ss_pred -eeeEeeec-ccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 475 -KLEHLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 475 -~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.....+.. |...|.+++|++++ +|++++.||+|++||
T Consensus 239 ~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 239 WVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYE 277 (330)
T ss_dssp EEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEE
T ss_pred eEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEE
Confidence 34455554 89999999999765 899999999999997
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.4e-36 Score=296.13 Aligned_cols=295 Identities=22% Similarity=0.356 Sum_probs=249.4
Q ss_pred CcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccE
Q 010324 188 GTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETV 267 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v 267 (513)
+.......+|+.........+. +|.+.|++++|+|++ +|++|+.||+|+ +||+.+++... .+.+|...|
T Consensus 138 gs~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~-~l~s~s~dg~i~-vwd~~~~~~~~--------~~~~h~~~v 206 (464)
T 3v7d_B 138 GADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILVSGSTDRTVR-VWDIKKGCCTH--------VFEGHNSTV 206 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSTT-EEEEEETTSCEE-EEETTTTEEEE--------EECCCSSCE
T ss_pred EcCCCcEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCC-EEEEEeCCCCEE-EEECCCCcEEE--------EECCCCCcc
Confidence 3444556678877777888877 999999999999988 999999999997 99999876544 345699999
Q ss_pred EEEEEc--CCCCEEEEEeCCCcEEEEEcCCccee-----------------------eecccccccCeEEEEEccCCCEE
Q 010324 268 LCIEFS--RDSEMLASGSQDGKIKVWRIRSGQCL-----------------------RRLERAHSEGVTSLVFSRDGSQI 322 (513)
Q Consensus 268 ~~l~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~l 322 (513)
.+++|+ +++.++++|+.||.|++||+.++... ..+ .+|...+.++ +++++++
T Consensus 207 ~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~--~~~~~~l 283 (464)
T 3v7d_B 207 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-RGHMASVRTV--SGHGNIV 283 (464)
T ss_dssp EEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE-CCCSSCEEEE--EEETTEE
T ss_pred EEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc-cCccceEEEE--cCCCCEE
Confidence 999998 57899999999999999999876532 233 3677778776 5678999
Q ss_pred EEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeE
Q 010324 323 LSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNS 402 (513)
Q Consensus 323 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (513)
++|+.||.|++||+++++.+..+.+|...|.+++|+|+++++++++.||.|++||+++++.+..+. +|...+.+
T Consensus 284 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~------~h~~~v~~ 357 (464)
T 3v7d_B 284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ------GHTALVGL 357 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC------CCSSCEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe------CCCCcEEE
Confidence 999999999999999999999999999999999999999999999999999999999999888876 57788999
Q ss_pred EEecCCCCCeEEEEcCCCcEEEEEccCe-EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEe-e
Q 010324 403 VHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHL-M 480 (513)
Q Consensus 403 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~ 480 (513)
+.+++ ..+++++.||.|++||+... ...... +...+..++++++++++++|+ ||.|++||+.+++.+.. +
T Consensus 358 ~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~ 429 (464)
T 3v7d_B 358 LRLSD---KFLVSAAADGSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI 429 (464)
T ss_dssp EEECS---SEEEEEETTSEEEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT
T ss_pred EEEcC---CEEEEEeCCCcEEEEECCCCceeeeec----CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh
Confidence 99973 79999999999999999843 332222 234566788999999999998 89999999999999875 6
Q ss_pred ecccCCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 481 KVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 481 ~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
..|.+.|.+++|+ +..++++++.||.+.+|
T Consensus 430 ~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 430 LKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred ccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 7789999999997 45566677788876655
No 70
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-36 Score=290.80 Aligned_cols=243 Identities=23% Similarity=0.399 Sum_probs=211.0
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccc------------------cCeEEEEEccCCCEEE
Q 010324 262 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHS------------------EGVTSLVFSRDGSQIL 323 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l~ 323 (513)
+|...|.+++|+|+|++|++|+ ++.+++|++.+++.+..+. .+. ..|.+++|+|+|++|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLS-DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEEC-C-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEec-CccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 4999999999999999999986 7899999999998877664 222 2499999999999999
Q ss_pred EeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEE
Q 010324 324 STSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSV 403 (513)
Q Consensus 324 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
+|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++....+. +...+.++
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~ 212 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-------IEDGVTTV 212 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-------CSSCEEEE
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-------cCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999998877764 34578999
Q ss_pred EecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeec----CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc----
Q 010324 404 HLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSS----GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG---- 474 (513)
Q Consensus 404 ~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~----~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---- 474 (513)
+++|.++.++++++.|+.|++||+. +..+..+.. ...+...+.+++|+|+|++|++|+.||.|++||+.+.
T Consensus 213 ~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 9999666999999999999999998 444444421 1345678999999999999999999999999998753
Q ss_pred --------eeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 475 --------KLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 475 --------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+...+.+|...|.+++|+|++.+|++|+.||.|++||+
T Consensus 293 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 293 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp --------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred cccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 345677889999999999999999999999999999984
No 71
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-35 Score=292.99 Aligned_cols=278 Identities=21% Similarity=0.367 Sum_probs=237.9
Q ss_pred eeeeccccCce-eEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 206 HTIKFGTKSHA-ECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 206 ~~~~~~h~~~v-~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
..+. +|...| .|+.| ++++|++|+.||.|+ +||+.+++... .+.+|...|.+++|+|++ .|++|+.
T Consensus 115 ~~l~-~h~~~v~~~~~~--~~~~l~sgs~dg~i~-vwd~~~~~~~~--------~~~~h~~~V~~l~~~~~~-~l~s~s~ 181 (464)
T 3v7d_B 115 TTLR-GHMTSVITCLQF--EDNYVITGADDKMIR-VYDSINKKFLL--------QLSGHDGGVWALKYAHGG-ILVSGST 181 (464)
T ss_dssp EEEE-CCSSSCEEEEEE--ETTEEEEEETTSCEE-EEETTTTEEEE--------EECCCSSCEEEEEECSTT-EEEEEET
T ss_pred EEEc-CCCCCcEEEEEE--CCCEEEEEcCCCcEE-EEECCCCcEEE--------EEeCCCcCEEEEEEcCCC-EEEEEeC
Confidence 3444 787774 66666 567999999999997 99998887554 344699999999999988 9999999
Q ss_pred CCcEEEEEcCCcceeeecccccccCeEEEEEc--cCCCEEEEeeCCCcEEEEecCCCce---------------------
Q 010324 285 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS--RDGSQILSTSFDSTARIHGLKSGKL--------------------- 341 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~--------------------- 341 (513)
||+|++||+.+++.+..+. +|...|.+++|+ +++.++++|+.||.|++||++++..
T Consensus 182 dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
T 3v7d_B 182 DRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260 (464)
T ss_dssp TSCEEEEETTTTEEEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred CCCEEEEECCCCcEEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence 9999999999999988886 899999999998 5788999999999999999987653
Q ss_pred --eeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC
Q 010324 342 --LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT 419 (513)
Q Consensus 342 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 419 (513)
+..+.+|...|.++ +++++++++++.||.|++||+++++.+..+. +|...+.+++|+|++ ..+++++.|
T Consensus 261 ~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~-~~l~sg~~d 331 (464)
T 3v7d_B 261 YFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS------GHTDRIYSTIYDHER-KRCISASMD 331 (464)
T ss_dssp TEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC------CCSSCEEEEEEETTT-TEEEEEETT
T ss_pred EEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec------CCCCCEEEEEEcCCC-CEEEEEeCC
Confidence 44566788888776 6778999999999999999999999888775 577899999999987 899999999
Q ss_pred CcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCE
Q 010324 420 SSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNL 498 (513)
Q Consensus 420 ~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 498 (513)
+.|++||+. +..+..+.. +...+.+++++ +.++++|+.||.|++||+.++....... |...+..++|+|++.+
T Consensus 332 g~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 405 (464)
T 3v7d_B 332 TTIRIWDLENGELMYTLQG---HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNI 405 (464)
T ss_dssp SCEEEEETTTTEEEEEECC---CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSE
T ss_pred CcEEEEECCCCcEEEEEeC---CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCE
Confidence 999999997 555555543 45678899987 5899999999999999999887665553 6678889999999999
Q ss_pred EEEEECCCeEEeccC
Q 010324 499 LATYGEDCTMKLWKP 513 (513)
Q Consensus 499 l~s~~~dg~i~iWdp 513 (513)
+++|+ ||.|++||.
T Consensus 406 l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 406 LVSGS-ENQFNIYNL 419 (464)
T ss_dssp EEEEE-TTEEEEEET
T ss_pred EEEec-CCeEEEEEC
Confidence 99998 899999984
No 72
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-35 Score=281.19 Aligned_cols=248 Identities=21% Similarity=0.331 Sum_probs=208.4
Q ss_pred cccccccCCccEEEEEE-----cC-CCCEEEEEeCCCcEEEEEcCCc-------ceeeecccccccCeEEEEEccCCCEE
Q 010324 256 ADETFMMHDETVLCIEF-----SR-DSEMLASGSQDGKIKVWRIRSG-------QCLRRLERAHSEGVTSLVFSRDGSQI 322 (513)
Q Consensus 256 ~~~~~~~h~~~v~~l~~-----~~-~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l 322 (513)
....+.+|...|++++| ++ ++++|++|+.|++|++||+.++ .....+. +|...|.+++|+|++.++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSSTTEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc-cCCCceEEEEECCCCCEE
Confidence 33467789999999999 77 9999999999999999998753 3444554 899999999999999999
Q ss_pred EEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeE
Q 010324 323 LSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNS 402 (513)
Q Consensus 323 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (513)
++|+.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+... ...... ....|...+.+
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~---~~~~~~~~v~~ 167 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSA---EKENHSDWVSC 167 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECC---TTTSCSSCEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeee---cccCCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999843 332222 12357788999
Q ss_pred EEecCCCC---------CeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 403 VHLFPKNP---------DHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 403 ~~~~~~~~---------~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
+.|+|.+. .++++++.|+.|++||........+.. +...+.+++|+|+|++|++|+.||.|++||+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKA---HESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEEC---CSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcC---ccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 99999763 689999999999999977666555543 456799999999999999999999999999954
Q ss_pred -ceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 474 -GKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 474 -~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
......+ .+...|++++|+|++.+++++ .|+.|++||.
T Consensus 245 ~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~ 283 (343)
T 2xzm_R 245 LTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNL 283 (343)
T ss_dssp CSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEES
T ss_pred Ccccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEe
Confidence 3344444 356679999999999887655 5788999973
No 73
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.9e-36 Score=294.32 Aligned_cols=269 Identities=22% Similarity=0.380 Sum_probs=236.6
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
+|...|.|++| +++++++|+.||.|+ +||..+++... .+.+|...|.+++| ++++|++|+.||.|++
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~-iwd~~~~~~~~--------~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~v 197 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIK-IWDKNTLECKR--------ILTGHTGSVLCLQY--DERVIITGSSDSTVRV 197 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEE-EEESSSCCEEE--------EECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEE-EEeCCCCeEEE--------EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEE
Confidence 67778998887 789999999999997 99998876554 34569999999999 7889999999999999
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee---eEecccccceeEEEEccCCCEEEEE
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL---KEFRGHSSYVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~ 367 (513)
||+.+++.+..+. .|...|.+++|+ +..+++|+.||.|++||++++... ..+.+|...|.+++| ++++++++
T Consensus 198 wd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~ 272 (435)
T 1p22_A 198 WDVNTGEMLNTLI-HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSA 272 (435)
T ss_dssp EESSSCCEEEEEC-CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred EECCCCcEEEEEc-CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEE
Confidence 9999999998887 899999999997 459999999999999999988765 667789999999999 67899999
Q ss_pred eCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEE
Q 010324 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFV 446 (513)
Q Consensus 368 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~ 446 (513)
+.||.|++||+++++.+..+. +|...+.++.+. +..+++++.|+.|++||++ +..+..+.. +...+.
T Consensus 273 ~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~v~ 340 (435)
T 1p22_A 273 SGDRTIKVWNTSTCEFVRTLN------GHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEG---HEELVR 340 (435)
T ss_dssp ETTSEEEEEETTTCCEEEEEE------CCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEE
T ss_pred eCCCeEEEEECCcCcEEEEEc------CCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeC---CcCcEE
Confidence 999999999999999888876 567789999884 3799999999999999998 555555543 456788
Q ss_pred EEEECCCCCEEEEEecCceEEEEECCCce---------eeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 447 AACVSPKGEWIYCVGEDRNLYCFSHQSGK---------LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 447 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
++++ ++.++++|+.||.|++||+.++. .+..+.+|.+.|++++| ++.+|++|+.||+|++||.
T Consensus 341 ~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 341 CIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp EEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-
T ss_pred EEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEEC
Confidence 8888 78999999999999999998776 78889999999999999 7888999999999999983
No 74
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.7e-37 Score=288.87 Aligned_cols=250 Identities=18% Similarity=0.235 Sum_probs=202.1
Q ss_pred eeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC--CCCEEEEEe
Q 010324 206 HTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGS 283 (513)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~ 283 (513)
+.+..+|.+.|++++|+|+|++||+|+.|++|+ +||+.++... ....+.+|...|.+++|+| ++++|++|+
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~-lwd~~~~~~~------~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s 78 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVK-IFDVRNGGQI------LIADLRGHEGPVWQVAWAHPMYGNILASCS 78 (316)
T ss_dssp --------CCEEEEEECGGGCEEEEEETTTEEE-EEEEETTEEE------EEEEEECCSSCEEEEEECCGGGSSCEEEEE
T ss_pred eeecccccCeEEEeeEcCCCCEEEEEeCCCeEE-EEEecCCCcE------EEEEEcCCCccEEEEEeCCCCCCCEEEEEE
Confidence 334459999999999999999999999999997 9999876421 1235667999999999986 489999999
Q ss_pred CCCcEEEEEcCCcc--eeeecccccccCeEEEEEccC--CCEEEEeeCCCcEEEEecCCCce---eeEecccccceeEEE
Q 010324 284 QDGKIKVWRIRSGQ--CLRRLERAHSEGVTSLVFSRD--GSQILSTSFDSTARIHGLKSGKL---LKEFRGHSSYVNDAI 356 (513)
Q Consensus 284 ~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~ 356 (513)
.|++|++||+.++. ....+. +|...|.+++|+|+ +.+|++|+.|+.|++||++++.. ...+.+|...|.+++
T Consensus 79 ~D~~v~iWd~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 79 YDRKVIIWREENGTWEKSHEHA-GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS 157 (316)
T ss_dssp TTSCEEEECCSSSCCCEEEEEC-CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred CCCEEEEEECCCCcceEEEEcc-CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence 99999999999874 444554 79999999999997 78999999999999999987632 345667889999999
Q ss_pred EccC-----------------CCEEEEEeCCCcEEEEeCCCCc---eeEeecCCCCCCCCCceeeEEEecCCC---CCeE
Q 010324 357 FTND-----------------GSRVVTASSDCTVKVWDLKSTD---CLQTFKPPPPLRGGDASVNSVHLFPKN---PDHI 413 (513)
Q Consensus 357 ~~~~-----------------~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l 413 (513)
|+|+ +++|++++.|+.|++||++... ....+ .+|...|.+++|+|++ ...+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l------~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL------EAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC------BCCSSCEEEEECCCCSSCSCCEE
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec------ccCCCceEEEEecCCCCCCCceE
Confidence 9997 4689999999999999997553 33333 3788899999999985 4789
Q ss_pred EEEcCCCcEEEEEccCe-----EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 414 VVCNKTSSIYIMTLQGQ-----VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 414 ~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
++++.|+.|++|++... ....+. .+...+.+++|+|+|++|++++.||.|++|+..
T Consensus 232 as~s~D~~v~iw~~~~~~~~~~~~~~~~---~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDDASSNTWSPKLLH---KFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEETTCEEEEEECSSTTCCCCBCCEEE---ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEcCCCeEEEEEccCccccchhhhhhh---cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999999999998741 111121 235679999999999999999999999999975
No 75
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-37 Score=322.23 Aligned_cols=322 Identities=9% Similarity=0.064 Sum_probs=235.2
Q ss_pred eccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccc---cc-ccc
Q 010324 185 LFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQ---AD-ETF 260 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~---~~-~~~ 260 (513)
++.+.......+|+.......+.+. |.+.|++++|+|++++|++|+.||.|+ +||+.++... .+... .. ..+
T Consensus 72 L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~-lwd~~~~~~~-~~~i~~~~~~~~~~ 147 (902)
T 2oaj_A 72 LVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMI-VYDIDRDQLS-SFKLDNLQKSSFFP 147 (902)
T ss_dssp EEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEE-EEETTTTEEE-EEEECCHHHHHTCS
T ss_pred EEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEE-EEECCCCccc-cceecccccccccc
Confidence 3333444556678877777777664 678999999999999999999999997 9999887653 11110 00 244
Q ss_pred ccCCccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCcceeeeccc-----------------ccccCeEEEEEccCCCEE
Q 010324 261 MMHDETVLCIEFSRD-SEMLASGSQDGKIKVWRIRSGQCLRRLER-----------------AHSEGVTSLVFSRDGSQI 322 (513)
Q Consensus 261 ~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~l 322 (513)
.+|.+.|.+++|+|+ +..+++|+.||.| +||+.+++.+..+.. .|...|.+++|+|+|.+|
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 226 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI 226 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence 679999999999995 5789999999999 999999988777651 135779999999999999
Q ss_pred EEeeCCCcEEEEecCCCceeeE--ec---c-------------cccceeEEEEcc----CC-CEEEEEeCC-----CcEE
Q 010324 323 LSTSFDSTARIHGLKSGKLLKE--FR---G-------------HSSYVNDAIFTN----DG-SRVVTASSD-----CTVK 374 (513)
Q Consensus 323 ~~~~~dg~i~i~d~~~~~~~~~--~~---~-------------~~~~v~~~~~~~----~~-~~l~~~~~d-----g~i~ 374 (513)
++|+.||.|++||+++++.+.. +. . |...|.+++|++ ++ ..+++|+.| +.+.
T Consensus 227 asgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~ 306 (902)
T 2oaj_A 227 ITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLT 306 (902)
T ss_dssp EEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEE
T ss_pred EEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEE
Confidence 9999999999999999887653 21 1 244789999953 33 345555444 2455
Q ss_pred EEe-----------------------------------------------------------------------CCCCce
Q 010324 375 VWD-----------------------------------------------------------------------LKSTDC 383 (513)
Q Consensus 375 iwd-----------------------------------------------------------------------~~~~~~ 383 (513)
+|+ +.++..
T Consensus 307 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~ 386 (902)
T 2oaj_A 307 MIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIF 386 (902)
T ss_dssp EEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCE
T ss_pred EEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCc
Confidence 555 222211
Q ss_pred eEe-ec----------------------------------CCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc
Q 010324 384 LQT-FK----------------------------------PPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 428 (513)
Q Consensus 384 ~~~-~~----------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~ 428 (513)
... .. ....+.+|...+.+++++|++ ..+++++.|++|++||+.
T Consensus 387 ~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~ 465 (902)
T 2oaj_A 387 TDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDAS 465 (902)
T ss_dssp ECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESS
T ss_pred ccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEEecCCCcEEEEECC
Confidence 100 00 000011222233334455655 799999999999999997
Q ss_pred CeEEE---Eeec------CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce------------------------
Q 010324 429 GQVVK---SFSS------GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK------------------------ 475 (513)
Q Consensus 429 ~~~~~---~~~~------~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~------------------------ 475 (513)
..... .+.. ...+...|.+++|+|+|++||+|+.||+|++||+.+++
T Consensus 466 ~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (902)
T 2oaj_A 466 HGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNN 545 (902)
T ss_dssp CCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGG
T ss_pred CccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccC
Confidence 43211 0100 01456789999999999999999999999999998762
Q ss_pred ---------------------eeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 476 ---------------------LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 476 ---------------------~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
++..+.+|.+.|++++|+|+| +||+|+.||+|++||.
T Consensus 546 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~ 603 (902)
T 2oaj_A 546 TNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDR 603 (902)
T ss_dssp SSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred CccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence 367788899999999999999 9999999999999983
No 76
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-36 Score=317.90 Aligned_cols=210 Identities=14% Similarity=0.133 Sum_probs=179.4
Q ss_pred eeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCc
Q 010324 208 IKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 287 (513)
Q Consensus 208 ~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 287 (513)
...+|.+.|+|++|+|+|++||+|+.||.|+ +|+..+.+..... .|...|.+++|+| |++|++++.|++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~-lw~~~~~~~~~~~---------~~~~~V~~l~fsp-g~~L~S~s~D~~ 80 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVH-IYGQQQVEVVIKL---------EDRSAIKEMRFVK-GIYLVVINAKDT 80 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEE-EECSTTCEEEEEC---------SSCCCEEEEEEET-TTEEEEEETTCE
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEE-EEeCCCcEEEEEc---------CCCCCEEEEEEcC-CCEEEEEECcCe
Confidence 3459999999999999999999999999997 9998765543221 2788999999999 889999999999
Q ss_pred EEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee-----------eEecccccceeEEE
Q 010324 288 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL-----------KEFRGHSSYVNDAI 356 (513)
Q Consensus 288 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~v~~~~ 356 (513)
|++||+.+++.+..+. |...|++++|+|+++++++|+.||.|++||+++++.. ..+.+|.+.|.+++
T Consensus 81 v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~ 158 (902)
T 2oaj_A 81 VYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ 158 (902)
T ss_dssp EEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEE
T ss_pred EEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEE
Confidence 9999999999888875 6688999999999999999999999999999888753 23456889999999
Q ss_pred EccC-CCEEEEEeCCCcEEEEeCCCCceeEeecCCC------------CCCCCCceeeEEEecCCCCCeEEEEcCCCcEE
Q 010324 357 FTND-GSRVVTASSDCTVKVWDLKSTDCLQTFKPPP------------PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 423 (513)
Q Consensus 357 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 423 (513)
|+|+ +..+++|+.||.| +||+++++....+.... ....|...|.+++|+|++ ..+++++.|+.|+
T Consensus 159 ~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~ 236 (902)
T 2oaj_A 159 WNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLV 236 (902)
T ss_dssp EETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEE
T ss_pred EccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEE
Confidence 9996 4789999999999 99999998887776431 112345779999999997 8999999999999
Q ss_pred EEEcc-CeEE
Q 010324 424 IMTLQ-GQVV 432 (513)
Q Consensus 424 i~d~~-~~~~ 432 (513)
+||++ ++.+
T Consensus 237 lWd~~~g~~~ 246 (902)
T 2oaj_A 237 FWDANSGHMI 246 (902)
T ss_dssp EEETTTCCEE
T ss_pred EEECCCCcEE
Confidence 99997 4443
No 77
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.6e-35 Score=286.17 Aligned_cols=273 Identities=26% Similarity=0.480 Sum_probs=235.9
Q ss_pred eeeeccccCce-eEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 206 HTIKFGTKSHA-ECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 206 ~~~~~~h~~~v-~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
+.+. +|.+.| .|+ +++|++|++|+.||.|+ +||+.+++... .+.+|...|.+++|+ ++++++|+.
T Consensus 112 ~~l~-~h~~~v~~~~--~~~g~~l~sg~~dg~i~-vwd~~~~~~~~--------~~~~h~~~v~~~~~~--~~~l~s~~~ 177 (445)
T 2ovr_B 112 KVLK-GHDDHVITCL--QFCGNRIVSGSDDNTLK-VWSAVTGKCLR--------TLVGHTGGVWSSQMR--DNIIISGST 177 (445)
T ss_dssp EEEE-CSTTSCEEEE--EEETTEEEEEETTSCEE-EEETTTCCEEE--------ECCCCSSCEEEEEEE--TTEEEEEET
T ss_pred EEec-ccCCCcEEEE--EEcCCEEEEEECCCcEE-EEECCCCcEEE--------EEcCCCCCEEEEEec--CCEEEEEeC
Confidence 3344 788765 554 45689999999999997 99999887554 345699999999998 569999999
Q ss_pred CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEE
Q 010324 285 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRV 364 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 364 (513)
||.|++||+.+++.+..+. +|...|.+++|+ ++.+++|+.||.|++||+++++.+..+.+|...|.++.| +++++
T Consensus 178 dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l 252 (445)
T 2ovr_B 178 DRTLKVWNAETGECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRV 252 (445)
T ss_dssp TSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCE
T ss_pred CCeEEEEECCcCcEEEEEC-CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEE
Confidence 9999999999999998887 899999999995 568999999999999999999999999999999999999 67899
Q ss_pred EEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCC
Q 010324 365 VTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGG 443 (513)
Q Consensus 365 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~ 443 (513)
++++.||.|++||+++++.+..+. +|...+.++.+ ++..+++++.|+.|++||++ +..+..+.. +..
T Consensus 253 ~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~ 320 (445)
T 2ovr_B 253 VSGAYDFMVKVWDPETETCLHTLQ------GHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTG---HQS 320 (445)
T ss_dssp EEEETTSCEEEEEGGGTEEEEEEC------CCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECC---CCS
T ss_pred EEEcCCCEEEEEECCCCcEeEEec------CCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcC---Ccc
Confidence 999999999999999998888775 56778999998 34899999999999999998 555555543 345
Q ss_pred cEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeec---ccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 444 DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV---HEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 444 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+.++.+ +++++++|+.||.|++||+.+++.+..+.+ |...|++++|+ +++|++|+.||.|++||.
T Consensus 321 ~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 321 LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 5666665 577999999999999999999999988886 88899999995 689999999999999984
No 78
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.6e-35 Score=300.76 Aligned_cols=286 Identities=16% Similarity=0.224 Sum_probs=245.8
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCcc-EEEEEEcC--CCCEEEEEeCCCc
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDET-VLCIEFSR--DSEMLASGSQDGK 287 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~--~~~~l~s~~~dg~ 287 (513)
.|.+.|.+++|+|+|++||+++ ++.++ +||+.++... ......+.+|... |.+++|+| ++++|++|+.||.
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~-v~~~~~~~~~----~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~ 89 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAF-VRCLDDGDSK----VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK 89 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEE-EEECCSSCCS----SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEE-EEECCCCCCc----cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCE
Confidence 7889999999999999999998 88996 9999876110 0122345679999 99999999 9999999999999
Q ss_pred EEEEEcCCc--------ceeeecccccccCeEEEEEccCCCEEEEeeCC----CcEEEEecCCCceeeEecccccceeEE
Q 010324 288 IKVWRIRSG--------QCLRRLERAHSEGVTSLVFSRDGSQILSTSFD----STARIHGLKSGKLLKEFRGHSSYVNDA 355 (513)
Q Consensus 288 i~vwd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~~ 355 (513)
|++||+.++ .....+. .|...|.+++|+|++++|++++.+ +.|.+|| .++.+..+.+|...|.++
T Consensus 90 v~vw~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~ 166 (615)
T 1pgu_A 90 VIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINAC 166 (615)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEE
T ss_pred EEEEeCCCCcccccccccccchhh-cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEE
Confidence 999999755 5555665 789999999999999999999987 6888888 677888999999999999
Q ss_pred EEccCCC-EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCc---eeeEEEecCCCCCeEEEEcCCCcEEEEEcc-Ce
Q 010324 356 IFTNDGS-RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA---SVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQ 430 (513)
Q Consensus 356 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~ 430 (513)
+|+|+++ .+++++.||.|++||+.+++....+. +|.. .+.+++|+|+++..+++++.++.|++||+. +.
T Consensus 167 ~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 167 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec------ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 9999998 89999999999999999998888776 4556 899999999834899999999999999998 55
Q ss_pred EEEEeec-CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc----cCCeEEEEEcCCCCEEEEEECC
Q 010324 431 VVKSFSS-GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH----EKDVIGVTHHPHRNLLATYGED 505 (513)
Q Consensus 431 ~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~~~~~p~~~~l~s~~~d 505 (513)
.+..+.. ...+...+.+++|+ +++++++++.||.|++||+.+++.+..+..+ ...+.++.|. ++.++++++.|
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 318 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLD 318 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETT
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECC
Confidence 5555522 11356789999999 9999999999999999999999999888876 4678888886 88999999999
Q ss_pred CeEEeccC
Q 010324 506 CTMKLWKP 513 (513)
Q Consensus 506 g~i~iWdp 513 (513)
|.|++||.
T Consensus 319 g~i~~~d~ 326 (615)
T 1pgu_A 319 GTLNFYEL 326 (615)
T ss_dssp SCEEEEET
T ss_pred CCEEEEEC
Confidence 99999984
No 79
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.6e-36 Score=291.51 Aligned_cols=282 Identities=16% Similarity=0.212 Sum_probs=231.1
Q ss_pred ceeEEEECCCCCEEE-EEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 010324 215 HAECARFSPDGQFLV-SCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKVWR 292 (513)
Q Consensus 215 ~v~~~~~s~~g~~la-~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~vwd 292 (513)
...+++++|+...++ +|+.||.|+ +|++....... .....+.+|...|.+++|+| ++++|++|+.||.|++||
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~-v~~~~~~~~~~----~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFL-VLPLGKTGRVD----KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEE-EEETTCCEECC----TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEE-EEECccCCCCC----CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 345689999876444 578999996 99986543221 12235667999999999999 999999999999999999
Q ss_pred cCCc-------ceeeecccccccCeEEEEEccCC-CEEEEeeCCCcEEEEecCCCceeeEe--cccccceeEEEEccCCC
Q 010324 293 IRSG-------QCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKLLKEF--RGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 293 ~~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~ 362 (513)
+.++ +.+..+. +|...|.+++|+|++ ++|++++.||.|++||+++++.+..+ ..|...|.+++|+|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 189 (402)
T 2aq5_A 111 IPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189 (402)
T ss_dssp CCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS
T ss_pred ccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC
Confidence 9987 4566665 799999999999998 69999999999999999999999999 78999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCc-eeeEEEecCCCCCeEEEE---cCCCcEEEEEccCe-E-EEEee
Q 010324 363 RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA-SVNSVHLFPKNPDHIVVC---NKTSSIYIMTLQGQ-V-VKSFS 436 (513)
Q Consensus 363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~---~~~~~i~i~d~~~~-~-~~~~~ 436 (513)
+|++++.||.|++||+++++.+..+.. .+.. .+.++.|+|++ .+++++ +.++.|++||++.. . .....
T Consensus 190 ~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~ 263 (402)
T 2aq5_A 190 LICTSCRDKRVRVIEPRKGTVVAEKDR-----PHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQE 263 (402)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEEC-----SSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred EEEEEecCCcEEEEeCCCCceeeeecc-----CCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence 999999999999999999988877731 2333 48899999986 788888 79999999999842 2 22222
Q ss_pred cCccCCCcEEEEEECCCCCEEEE-EecCceEEEEECCCcee-eEeeec--ccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 437 SGKREGGDFVAACVSPKGEWIYC-VGEDRNLYCFSHQSGKL-EHLMKV--HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 437 ~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iwd~~~~~~-~~~~~~--h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
. .+...+.+++|+|+++++++ |+.||.|++||+.+++. +..+.. |..+|.+++|+|++.++++ .|+.+++|+
T Consensus 264 ~--~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 264 L--DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp C--CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred c--cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 1 23456889999999999975 55799999999998874 555544 4589999999999988875 577999997
No 80
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-35 Score=280.93 Aligned_cols=250 Identities=20% Similarity=0.232 Sum_probs=212.5
Q ss_pred cccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC--CcceeeecccccccCeEEEEEccC--CCEEEEeeCCCcEEE
Q 010324 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR--SGQCLRRLERAHSEGVTSLVFSRD--GSQILSTSFDSTARI 333 (513)
Q Consensus 258 ~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i 333 (513)
..+.+|...|.+++|+|++++|++|+.||.|++||+. +++.+..+. .|...|.+++|+|+ +++|++|+.||.|++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 3566799999999999999999999999999999998 566666775 79999999999977 999999999999999
Q ss_pred EecCCCc--eeeEecccccceeEEEEccC--CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC-
Q 010324 334 HGLKSGK--LLKEFRGHSSYVNDAIFTND--GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK- 408 (513)
Q Consensus 334 ~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 408 (513)
||+.+++ .+..+..|...|.+++|+|+ +.++++++.||.|++||++++....... ...+...+.++.|+|.
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII----IDAHAIGVNSASWAPAT 159 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE----EECCTTCEEEEEECCCC
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE----ecCCCCceEEEEEcCcc
Confidence 9999887 77788889999999999999 9999999999999999999874332221 1256788999999995
Q ss_pred -----------CCCeEEEEcCCCcEEEEEccC-e-EEEEeecCccCCCcEEEEEECCC---CCEEEEEecCceEEEEECC
Q 010324 409 -----------NPDHIVVCNKTSSIYIMTLQG-Q-VVKSFSSGKREGGDFVAACVSPK---GEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 409 -----------~~~~l~~~~~~~~i~i~d~~~-~-~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~g~~dg~i~iwd~~ 472 (513)
++..+++++.|+.|++||++. . ..........+...+.+++|+|+ ++++++++.||.|++||+.
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 458999999999999999973 2 22222223345678999999999 8999999999999999998
Q ss_pred Cce-----eeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 473 SGK-----LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 473 ~~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
++. .......|...|++++|+|++++|++++.||.|++|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 864 2223334888999999999999999999999999997
No 81
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-35 Score=280.42 Aligned_cols=258 Identities=20% Similarity=0.268 Sum_probs=214.9
Q ss_pred eeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC--CCEEEEEe
Q 010324 206 HTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD--SEMLASGS 283 (513)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~ 283 (513)
..+. +|.+.|++++|+|++++||+|+.||.|+ +||+..+.. .....+.+|...|.+++|+|+ +++|++|+
T Consensus 5 ~~~~-~h~~~v~~~~~s~~~~~l~~~~~dg~i~-iw~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 76 (379)
T 3jrp_A 5 VIAN-AHNELIHDAVLDYYGKRLATCSSDKTIK-IFEVEGETH------KLIDTLTGHEGPVWRVDWAHPKFGTILASCS 76 (379)
T ss_dssp CCEE-ECCCCEEEEEECSSSSEEEEEETTSCEE-EEEEETTEE------EEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred EEec-CCcccEEEEEEcCCCCEEEEEECCCcEE-EEecCCCcc------eeeeEecCCCCcEEEEEeCCCCCCCEEEEec
Confidence 3444 9999999999999999999999999996 999974321 122345679999999999987 99999999
Q ss_pred CCCcEEEEEcCCcc--eeeecccccccCeEEEEEccC--CCEEEEeeCCCcEEEEecCCCc--eeeEecccccceeEEEE
Q 010324 284 QDGKIKVWRIRSGQ--CLRRLERAHSEGVTSLVFSRD--GSQILSTSFDSTARIHGLKSGK--LLKEFRGHSSYVNDAIF 357 (513)
Q Consensus 284 ~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~ 357 (513)
.||.|++||+.+++ .+..+. .|...|.+++|+|+ +.++++++.||.|++||++++. ....+..|...|.+++|
T Consensus 77 ~dg~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~ 155 (379)
T 3jrp_A 77 YDGKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 155 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEE
T ss_pred cCCEEEEEEcCCCceeEeeeec-CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEE
Confidence 99999999999887 555554 78999999999999 9999999999999999998873 34466788999999999
Q ss_pred cc-------------CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC--CCeEEEEcCCCcE
Q 010324 358 TN-------------DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN--PDHIVVCNKTSSI 422 (513)
Q Consensus 358 ~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~~~~i 422 (513)
+| ++.++++++.||.|++||++++........ ...+|...+.+++|+|++ +.++++++.|+.|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES--TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEE--EECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE--EEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 99 699999999999999999987653322110 122678899999999994 5899999999999
Q ss_pred EEEEccCe---EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc
Q 010324 423 YIMTLQGQ---VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 423 ~i~d~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 474 (513)
++||++.. ..........+...+.+++|+|+|++|++++.||.|++|++..+
T Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 234 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 99999843 13334444446778999999999999999999999999998743
No 82
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-34 Score=281.06 Aligned_cols=271 Identities=19% Similarity=0.253 Sum_probs=224.8
Q ss_pred ccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEE
Q 010324 190 AAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLC 269 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~ 269 (513)
......+|+.........+...|...|.+++|+|+|++|++|+.||.|+ +||+.+++... .+.+|...|.+
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~-iwd~~~~~~~~--------~~~~~~~~v~~ 181 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVD-IYDVESQTKLR--------TMAGHQARVGC 181 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEE-EEETTTCCEEE--------EECCCSSCEEE
T ss_pred CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEE-EEECcCCeEEE--------EecCCCCceEE
Confidence 3445667787778888888877999999999999999999999999997 99998876554 34469999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCC-cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccc
Q 010324 270 IEFSRDSEMLASGSQDGKIKVWRIRS-GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH 348 (513)
Q Consensus 270 l~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 348 (513)
++|+ ++++++|+.||.|++||+.. +..+..+. .|...|.+++|+|++.+|++|+.||.|++||+++++.+..+..|
T Consensus 182 ~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 258 (401)
T 4aez_A 182 LSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH 258 (401)
T ss_dssp EEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC
T ss_pred EEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC
Confidence 9994 67999999999999999984 55555665 89999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEccCCC-EEEEEe--CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE--EcCCCcEE
Q 010324 349 SSYVNDAIFTNDGS-RVVTAS--SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV--CNKTSSIY 423 (513)
Q Consensus 349 ~~~v~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~~~~i~ 423 (513)
...|.+++|+|++. .+++++ .||.|++||+++++....+. +...+.+++|+|++ ..+++ ++.++.|+
T Consensus 259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-------~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~ 330 (401)
T 4aez_A 259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-------AGSQVTSLIWSPHS-KEIMSTHGFPDNNLS 330 (401)
T ss_dssp SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-------CSSCEEEEEECSSS-SEEEEEECTTTCEEE
T ss_pred cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-------CCCcEEEEEECCCC-CeEEEEeecCCCcEE
Confidence 99999999999775 555544 69999999999999888875 34579999999988 66666 45899999
Q ss_pred EEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEee
Q 010324 424 IMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM 480 (513)
Q Consensus 424 i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 480 (513)
+|++.............+...+.+++|+|+|++|++++.||.|++|++.+++.+...
T Consensus 331 v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 331 IWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 999985433333333345678999999999999999999999999999998876554
No 83
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-34 Score=283.05 Aligned_cols=289 Identities=14% Similarity=0.143 Sum_probs=231.9
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccc---ccccccccc---------------------------------
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGK---LKKDLQYQA--------------------------------- 256 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~---~~~~~~~~~--------------------------------- 256 (513)
..++.|++|+|+|++|+++ .++.|+ +||+.+++ ....+....
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~-v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCIL-SFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEE-EEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEE-EEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 4578999999999966666 578896 99999887 433322110
Q ss_pred -------------ccccccCCccEEEEEEcCCCCEE-EEEeCCCcEEEEEcC--Ccceeeeccc-ccccCeEEEEEccCC
Q 010324 257 -------------DETFMMHDETVLCIEFSRDSEML-ASGSQDGKIKVWRIR--SGQCLRRLER-AHSEGVTSLVFSRDG 319 (513)
Q Consensus 257 -------------~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~~-~~~~~v~~~~~~~~~ 319 (513)
.....+|.+.|.+++|+|++++| ++|+.||.|++||+. +++.+..+.. .+...|.+++|+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 01122466689999999999996 889999999999999 8888777652 466889999999999
Q ss_pred CEEEEeeCCCcEEEEecCCCceee----EecccccceeEEEEccC---CCEEEEEeCCCcEEEEeCCCCceeEeecCCCC
Q 010324 320 SQILSTSFDSTARIHGLKSGKLLK----EFRGHSSYVNDAIFTND---GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPP 392 (513)
Q Consensus 320 ~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 392 (513)
++|++|+.+|.|++|++.+++... .+.+|...|.+++|+|+ +++|++++.|+.|++||++++..+..+.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---- 237 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL---- 237 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC----
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee----
Confidence 999999999999999998877554 77789999999999999 9999999999999999999988776642
Q ss_pred CCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCc----------------------cCCCcEEEEE
Q 010324 393 LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGK----------------------REGGDFVAAC 449 (513)
Q Consensus 393 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~----------------------~~~~~~~~~~ 449 (513)
.+|...|.+++|+ ++ .++++++.|+.|++||+. +..+..+.... .....+..++
T Consensus 238 -~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 314 (450)
T 2vdu_B 238 -FGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII 314 (450)
T ss_dssp -CCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred -cCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence 2577899999999 54 899999999999999998 55555554221 2235688999
Q ss_pred ECCCCCEEEEEe-cCceEEEEEC--CCc---eeeEeeecccCCeEEEEEcCCCCEEEEEEC-------CCeEEecc
Q 010324 450 VSPKGEWIYCVG-EDRNLYCFSH--QSG---KLEHLMKVHEKDVIGVTHHPHRNLLATYGE-------DCTMKLWK 512 (513)
Q Consensus 450 ~s~~~~~l~~g~-~dg~i~iwd~--~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-------dg~i~iWd 512 (513)
|+|+++++++++ .++.|++|++ .++ +.+..+..| +.|.+++|+|++ ++++++. +..|.+|.
T Consensus 315 ~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 315 KSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp ECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEE
Confidence 999999999999 8999999999 665 677778888 899999999954 4544432 44577774
No 84
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-36 Score=296.34 Aligned_cols=262 Identities=11% Similarity=0.070 Sum_probs=199.4
Q ss_pred cccCceeEEEECCCC---------CEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEE
Q 010324 211 GTKSHAECARFSPDG---------QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 281 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g---------~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 281 (513)
.+.+.|.+++|+|++ ++||+|+.++.. -..+|+++.+++
T Consensus 131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------------~~~~~~~~~laS 178 (524)
T 2j04_B 131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------------EPLNEHLEMFDK 178 (524)
T ss_dssp ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------------
T ss_pred ECCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------------Cccchhhhhhcc
Confidence 467899999999987 799999866420 012688999999
Q ss_pred EeCCCcEEEEEcCCccee----eecccccccCeEEEEEccC------CCEEEEeeCCCcEEEEecCCCce----------
Q 010324 282 GSQDGKIKVWRIRSGQCL----RRLERAHSEGVTSLVFSRD------GSQILSTSFDSTARIHGLKSGKL---------- 341 (513)
Q Consensus 282 ~~~dg~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~---------- 341 (513)
++.|++|+|||+.+++.. ..+. .|...|.+++|+|+ +.+|++++.||+|++||+.++..
T Consensus 179 ~s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~ 257 (524)
T 2j04_B 179 EKHSSCIQIFKMNTSTLHCVKVQTIV-HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK 257 (524)
T ss_dssp ---CEEEEEEEEETTTCCEEEEEEEE-ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred CCCCceEEEEEccCCCCCceEEEEEE-ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence 999999999999887643 2233 56788999999996 57999999999999999976642
Q ss_pred -eeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCce-eEeecCCCCCCCCCceeeEEE--ecCCCCCeEEEEc
Q 010324 342 -LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDC-LQTFKPPPPLRGGDASVNSVH--LFPKNPDHIVVCN 417 (513)
Q Consensus 342 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~ 417 (513)
...+.+|...|++++|+++ ..|++|+.||+|++||++++.. ...+. +|...|.+++ ++|++..++++++
T Consensus 258 p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~------~H~~~V~sv~~~~s~~g~~~laS~S 330 (524)
T 2j04_B 258 PSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQ------VHDSYILSVSTAYSDFEDTVVSTVA 330 (524)
T ss_dssp CSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEE------CSSSCEEEEEEECCTTSCCEEEEEE
T ss_pred ceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEee------cccccEEEEEEEcCCCCCeEEEEec
Confidence 2367788999999999986 4899999999999999987632 23333 6788999994 4554447999999
Q ss_pred CCCcEEEEEccC-eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCC
Q 010324 418 KTSSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR 496 (513)
Q Consensus 418 ~~~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~ 496 (513)
.|++|++||++. .....+.... ....+.+++|+|+++.+++++.|++|++||++++..+..+.+|.+.|++++|+|++
T Consensus 331 ~D~tvklWD~~~~~~~~~~~~~~-~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g 409 (524)
T 2j04_B 331 VDGYFYIFNPKDIATTKTTVSRF-RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH 409 (524)
T ss_dssp TTSEEEEECGGGHHHHCEEEEEC-SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC
T ss_pred cCCeEEEEECCCCCccccccccc-ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCC
Confidence 999999999973 3222222211 12346789999999999999999999999999999888899999999999999999
Q ss_pred CEEEEEECCCeEEeccC
Q 010324 497 NLLATYGEDCTMKLWKP 513 (513)
Q Consensus 497 ~~l~s~~~dg~i~iWdp 513 (513)
++|++|+.||+|++||+
T Consensus 410 ~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 410 PMVLAGSADGSLIITNA 426 (524)
T ss_dssp CBCEEEETTTEEECCBS
T ss_pred CeEEEEECCCEEEEEec
Confidence 99999999999999985
No 85
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-34 Score=303.73 Aligned_cols=299 Identities=19% Similarity=0.273 Sum_probs=248.7
Q ss_pred cccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEE
Q 010324 191 AMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCI 270 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l 270 (513)
.....+|+.........+. +|.+.|.+++|+|+|++||+|+.||.|+ +||+.+++.... +.+|...|.++
T Consensus 34 ~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~-vw~~~~~~~~~~--------~~~~~~~v~~~ 103 (814)
T 3mkq_A 34 SGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIR-VFNYNTGEKVVD--------FEAHPDYIRSI 103 (814)
T ss_dssp TSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEE-EEETTTCCEEEE--------EECCSSCEEEE
T ss_pred CCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEE-EEECCCCcEEEE--------EecCCCCEEEE
Confidence 3455677777777777777 8999999999999999999999999996 999998875543 34599999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCc-ceeeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCceeeEeccc
Q 010324 271 EFSRDSEMLASGSQDGKIKVWRIRSG-QCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGH 348 (513)
Q Consensus 271 ~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 348 (513)
+|+|++++|++++.||.|++||+.++ .....+. .|...|.+++|+| ++..+++++.||.|++||+.++.....+..+
T Consensus 104 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 182 (814)
T 3mkq_A 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182 (814)
T ss_dssp EECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred EEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC
Confidence 99999999999999999999999987 4445554 8999999999999 8899999999999999999988877777665
Q ss_pred c-cceeEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEE
Q 010324 349 S-SYVNDAIFTN--DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM 425 (513)
Q Consensus 349 ~-~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~ 425 (513)
. ..+.+++|+| ++.++++++.||.|++||+++++....+. +|...+.+++|+|++ ..+++++.||.|++|
T Consensus 183 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE------GHMSNVSFAVFHPTL-PIIISGSEDGTLKIW 255 (814)
T ss_dssp CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE------CCSSCEEEEEECSSS-SEEEEEETTSCEEEE
T ss_pred CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc------CCCCCEEEEEEcCCC-CEEEEEeCCCeEEEE
Confidence 4 8899999999 99999999999999999999998888775 567789999999988 799999999999999
Q ss_pred Ecc-CeEEEEeecCccCCCcEEEEEECCCCC--EEEEEecCceEEEEECCCcee----------eE--------------
Q 010324 426 TLQ-GQVVKSFSSGKREGGDFVAACVSPKGE--WIYCVGEDRNLYCFSHQSGKL----------EH-------------- 478 (513)
Q Consensus 426 d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~g~~dg~i~iwd~~~~~~----------~~-------------- 478 (513)
|.. +.....+.. +...+.+++|+|+|. +++++ .++.+.+|++..+.. +.
T Consensus 256 d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 331 (814)
T 3mkq_A 256 NSSTYKVEKTLNV---GLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTA 331 (814)
T ss_dssp ETTTCSEEEEECC---SSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEE
T ss_pred ECCCCcEEEEeec---CCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeee
Confidence 998 455555443 345799999999987 45544 477788888754321 11
Q ss_pred -------------------eeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 479 -------------------LMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 479 -------------------~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.+..+...+.+++|+|+|+++++++ ||.+.+|+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 332 VIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp ECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred ecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence 1122444678999999999999888 88899986
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.4e-36 Score=286.45 Aligned_cols=241 Identities=11% Similarity=0.117 Sum_probs=200.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCc--ceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG--QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK 340 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 340 (513)
+.++|++++|+|++++|++|+.||.|++||+.++ +.+..+. +|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 6789999999999999999999999999999988 6677776 899999999999999999999999999999999877
Q ss_pred ---eeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCce---eEeecCCCCCCCCCceeeEEEecCCCCCeEE
Q 010324 341 ---LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDC---LQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 414 (513)
Q Consensus 341 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 414 (513)
....+..|...|.+++|+|++++|++++.|+.|++||+++++. ...+.. .|...+.+++|+|++ .+++
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~-~~l~ 162 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR-----PLRSTILSLDWHPNN-VLLA 162 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS-----SCCSCEEEEEECTTS-SEEE
T ss_pred ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec-----ccCCCeEEEEEcCCC-CEEE
Confidence 6677788999999999999999999999999999999998763 444431 277899999999987 8999
Q ss_pred EEcCCCcEEEEEccCe----------------EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCcee--
Q 010324 415 VCNKTSSIYIMTLQGQ----------------VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKL-- 476 (513)
Q Consensus 415 ~~~~~~~i~i~d~~~~----------------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-- 476 (513)
+++.|+.|++||+... ........ .+...+.+++|+|+|++|++++.||.|++||+.+++.
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 9999999999998510 11112222 5677899999999999999999999999999999987
Q ss_pred --eEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 477 --EHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 477 --~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+..+.+|..+|.+++|+|++.+|++++.|+.+ +|+
T Consensus 242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EEC
T ss_pred eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEE
Confidence 78899999999999999999999999877766 553
No 87
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.3e-34 Score=294.72 Aligned_cols=267 Identities=23% Similarity=0.363 Sum_probs=215.0
Q ss_pred cCcccccccccccCccc-----ceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccc
Q 010324 187 RGTAAMKQDVEDMYPTT-----LSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFM 261 (513)
Q Consensus 187 ~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~ 261 (513)
.+.......+|+..... ..+.+. +|...|.+++|+|+|++|++|+.||+|+ +||+.++.... .+.
T Consensus 400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~Dg~v~-vwd~~~~~~~~--------~~~ 469 (694)
T 3dm0_A 400 SASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWDGELR-LWDLAAGVSTR--------RFV 469 (694)
T ss_dssp EEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTTEEEE--------EEE
T ss_pred EEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCCCcEE-EEECCCCccee--------EEe
Confidence 33344445566554322 233444 9999999999999999999999999997 99998876543 445
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeec--ccccccCeEEEEEccCC--CEEEEeeCCCcEEEEecC
Q 010324 262 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL--ERAHSEGVTSLVFSRDG--SQILSTSFDSTARIHGLK 337 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~ 337 (513)
+|...|.+++|+|++++|++|+.|++|++||.......... ..+|...|.+++|+|++ ..+++|+.|++|++||++
T Consensus 470 ~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~ 549 (694)
T 3dm0_A 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549 (694)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC
Confidence 69999999999999999999999999999998654332222 13688899999999986 589999999999999999
Q ss_pred CCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc
Q 010324 338 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN 417 (513)
Q Consensus 338 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 417 (513)
+++....+.+|.+.|++++|+|++++|++++.||.|++||+++++.+..+. +...+.+++|+|++ .++++ +
T Consensus 550 ~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-------~~~~v~~~~~sp~~-~~l~~-~ 620 (694)
T 3dm0_A 550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-------ANSVIHALCFSPNR-YWLCA-A 620 (694)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-------CSSCEEEEEECSSS-SEEEE-E
T ss_pred CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-------CCCcEEEEEEcCCC-cEEEE-E
Confidence 999999999999999999999999999999999999999999998877654 34579999999985 55554 4
Q ss_pred CCCcEEEEEccC-eEEEEeecCc----------------cCCCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 418 KTSSIYIMTLQG-QVVKSFSSGK----------------REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 418 ~~~~i~i~d~~~-~~~~~~~~~~----------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
.++.|++||+.. ..+..+.... .+...+++++|+|+|++|++|+.||.|++|++.
T Consensus 621 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 621 TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 566799999984 4444443211 111236789999999999999999999999975
No 88
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-35 Score=284.62 Aligned_cols=264 Identities=9% Similarity=0.027 Sum_probs=212.0
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
.-...|.+++|||||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~---d~~~~~-----------~l~gh~~~v~~V~FsPdg-------~~~~~~~ 71 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG---QPKYAK-----------DINCNSKNLFHVKEFPLE-------FENKLDF 71 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE---EECCCS-----------CCSSBGGGTEEEEEECCC-------CCCTTTT
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee---cccccc-----------eecCCCccEEEEEECCCC-------CcceEEE
Confidence 3457899999999999999999999995 433322 234699999999999998 4555555
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccccc-----ceeEEEEccCCCEEE
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS-----YVNDAIFTNDGSRVV 365 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~ 365 (513)
|+ ++....+...|...|.+++|+|+|..|++++.||.|++||... .+..+. |.. .|.+++|+|||++|+
T Consensus 72 ~~---~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LA 145 (588)
T 2j04_A 72 EL---AQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIV 145 (588)
T ss_dssp SC---CCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEE
T ss_pred Ee---CCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEE
Confidence 55 3333333334688999999999999999999999999999543 666666 654 499999999999999
Q ss_pred EEeCCCcEEEEeCCCCce-------eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEE----EE
Q 010324 366 TASSDCTVKVWDLKSTDC-------LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV----KS 434 (513)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----~~ 434 (513)
+|+.||+|++||+.++.. +.++.... .+|...|.+++|+|++ +++++.|+.+++|++.+... ..
T Consensus 146 sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~--~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~t 220 (588)
T 2j04_A 146 VGNEDGELQFFSIRKNSENTPEFYFESSIRLSD--AGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRM 220 (588)
T ss_dssp EEETTSEEEEEECCCCTTTCCCCEEEEEEECSC--TTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEE
T ss_pred EEcCCCEEEEEECCCCccccccceeeeeeeccc--ccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceee
Confidence 999999999999998752 34443222 3577899999999986 88899999999999985542 22
Q ss_pred eecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEE--cCCCCEEEEEECCCeEEecc
Q 010324 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTH--HPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~p~~~~l~s~~~dg~i~iWd 512 (513)
+.. .+...|.+++|+ |+.+++++ ++.|++||+.+++......+|.+.|.+++| +|++..+++++.||+ ++|.
T Consensus 221 L~~--~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 221 IQN--ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EEC--CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred ecc--cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 322 245678999999 68999887 699999999988875444489999999999 999999999999999 9996
No 89
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.6e-33 Score=264.97 Aligned_cols=271 Identities=24% Similarity=0.403 Sum_probs=222.8
Q ss_pred ccCcccccccccccCccc-----ceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEecccccccccccccccccc
Q 010324 186 FRGTAAMKQDVEDMYPTT-----LSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETF 260 (513)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~ 260 (513)
+.+..+....+|+..... +.+.+. +|...|.+++|+|+|++|++|+.|+.|+ +|+..........
T Consensus 55 ~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~~l~s~~~d~~i~-~~~~~~~~~~~~~-------- 124 (340)
T 4aow_A 55 LSASRDKTIIMWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGSWDGTLR-LWDLTTGTTTRRF-------- 124 (340)
T ss_dssp EEEETTSCEEEEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTTEEEEEE--------
T ss_pred EEEcCCCeEEEEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCCEEEEEcccccce-EEeecccceeeee--------
Confidence 334444455667654432 234444 8999999999999999999999999996 9998876654332
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCC--CEEEEeeCCCcEEEEecCC
Q 010324 261 MMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDG--SQILSTSFDSTARIHGLKS 338 (513)
Q Consensus 261 ~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~ 338 (513)
..+...+..+.+++++.+|++|+.|+.+++||+............|...+..++|++++ ..+++++.|+.|++||+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~ 204 (340)
T 4aow_A 125 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204 (340)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC
Confidence 23778899999999999999999999999999987666555555789999999999864 5788999999999999999
Q ss_pred CceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC
Q 010324 339 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK 418 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 418 (513)
++.+..+.+|...|++++|+|++++|++++.||.|++||+++.+.+..+. +...+.++.++|++ .+++++.
T Consensus 205 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~--~~~~~~~ 275 (340)
T 4aow_A 205 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD-------GGDIINALCFSPNR--YWLCAAT 275 (340)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-------CSSCEEEEEECSSS--SEEEEEE
T ss_pred CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec-------CCceEEeeecCCCC--ceeeccC
Confidence 99999999999999999999999999999999999999999998888775 33578999999864 5667778
Q ss_pred CCcEEEEEccCe-EEEEeec------CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce
Q 010324 419 TSSIYIMTLQGQ-VVKSFSS------GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK 475 (513)
Q Consensus 419 ~~~i~i~d~~~~-~~~~~~~------~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 475 (513)
|+.|++||+++. ....+.. ...+...|++++|+|+|++|++|+.||.|++||+.+|+
T Consensus 276 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999854 3333322 23456789999999999999999999999999999885
No 90
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.2e-34 Score=272.73 Aligned_cols=241 Identities=15% Similarity=0.203 Sum_probs=212.5
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc--eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC
Q 010324 262 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ--CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG 339 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 339 (513)
.|..+|.+++|+|++++|++|+.|+.|++||+.+++ .+..+. .|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 489999999999999999999999999999999887 777776 79999999999999999999999999999999888
Q ss_pred ceeeE--ecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCce---eEeecCCCCCCCCCceeeEEEecCCCCCeEE
Q 010324 340 KLLKE--FRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDC---LQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 414 (513)
Q Consensus 340 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 414 (513)
+.... +..|...|.+++|+|+++++++++.||.|++||++.+.. ...+. ..|...+.++.|+|++ ..++
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~-~~l~ 158 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK-----KPIRSTVLSLDWHPNS-VLLA 158 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC-----TTCCSCEEEEEECTTS-SEEE
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee-----cccCCCeeEEEEcCCC-CEEE
Confidence 75443 366888999999999999999999999999999998763 22221 2467899999999977 8999
Q ss_pred EEcCCCcEEEEEcc-------------------CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce
Q 010324 415 VCNKTSSIYIMTLQ-------------------GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK 475 (513)
Q Consensus 415 ~~~~~~~i~i~d~~-------------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 475 (513)
+++.++.|++||+. +.....+. .+...+.+++|+|+++++++++.||.|++||+.+++
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS---SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 235 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC---CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred EEcCCCCEEEEEcccccccccccccccccccchhhheEecC---CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 99999999999963 34444443 356679999999999999999999999999999999
Q ss_pred eeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 476 LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 476 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+..+..|..+|++++|+|++.+++++ .||.|++|+.
T Consensus 236 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 236 AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence 999999999999999999999988877 8999999973
No 91
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.2e-34 Score=274.50 Aligned_cols=251 Identities=15% Similarity=0.185 Sum_probs=215.6
Q ss_pred cccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc------eeeecccccccCeEEEEEccC----C---CEEEE
Q 010324 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ------CLRRLERAHSEGVTSLVFSRD----G---SQILS 324 (513)
Q Consensus 258 ~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~----~---~~l~~ 324 (513)
..+.+|...|++++|+| ++|++|+.||.|++||+.+++ .+..+. .|...|.+++|+|+ + .+|++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEE
Confidence 45677999999999998 799999999999999999887 666776 79999999999999 9 99999
Q ss_pred eeCCCcEEEEecCCCce-----eeEeccc-----ccceeEEEEc----cCCCE-EEEEeCCCcEEEEeCCC------Cce
Q 010324 325 TSFDSTARIHGLKSGKL-----LKEFRGH-----SSYVNDAIFT----NDGSR-VVTASSDCTVKVWDLKS------TDC 383 (513)
Q Consensus 325 ~~~dg~i~i~d~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~------~~~ 383 (513)
++.||.|++||+.+++. ...+..| ...|.+++|+ |++++ |++++.||.|++||+++ ++.
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 99999999999998887 8888888 5899999999 99999 99999999999999998 555
Q ss_pred eE-----eecC-CCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccC---CCcEEEEEECCC
Q 010324 384 LQ-----TFKP-PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKRE---GGDFVAACVSPK 453 (513)
Q Consensus 384 ~~-----~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~---~~~~~~~~~s~~ 453 (513)
+. .+.. ......+...+.+++|+|++ .+++++.++.|++||++ +..+..+.....+ ...+.+++|+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence 44 3321 00002467789999999987 99999999999999998 5556666542223 677999999999
Q ss_pred CCEEEEEecC---ceEEEEECCCceeeEeeec-------------ccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 454 GEWIYCVGED---RNLYCFSHQSGKLEHLMKV-------------HEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 454 ~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~-------------h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+++|++++.| |.|++||+.+++.+..+.+ |...|.+++|+|++++|++++.||.|++||.
T Consensus 245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 245 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 9999999999 9999999999999999998 9999999999999999999999999999984
No 92
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.8e-34 Score=272.74 Aligned_cols=264 Identities=14% Similarity=0.286 Sum_probs=216.3
Q ss_pred ccccccccCcccceeeeec----cccCceeEEEECCC----CCEEEEEecCCeEEEEEeccccccccccccccccccccC
Q 010324 192 MKQDVEDMYPTTLSHTIKF----GTKSHAECARFSPD----GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMH 263 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~s~~----g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h 263 (513)
....+|+.........+.. .|...|.+++|+|+ |++|++|+.||.|+ +||+.+++... .+.+|
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~-v~d~~~~~~~~--------~~~~~ 114 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR-IINPITMQCIK--------HYVGH 114 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE-EECTTTCCEEE--------EEESC
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE-EEEchhceEee--------eecCC
Confidence 3455666665555544431 36688999999998 67999999999997 99998876554 34469
Q ss_pred CccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCcceeeecc--cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc
Q 010324 264 DETVLCIEFSR-DSEMLASGSQDGKIKVWRIRSGQCLRRLE--RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK 340 (513)
Q Consensus 264 ~~~v~~l~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 340 (513)
...|.+++|+| ++.+|++|+.||.|++||+.+++.+..+. ..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 115 ~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 194 (366)
T 3k26_A 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR 194 (366)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHH
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCc
Confidence 99999999999 99999999999999999999998888772 3789999999999999999999999999999999876
Q ss_pred eeeEecc----------------------------cccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCce---------
Q 010324 341 LLKEFRG----------------------------HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDC--------- 383 (513)
Q Consensus 341 ~~~~~~~----------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------- 383 (513)
....+.. |...|.+++|+ ++++++++.||.|++||++++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 272 (366)
T 3k26_A 195 MMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSE 272 (366)
T ss_dssp HHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTC
T ss_pred cccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCC
Confidence 6544443 88999999999 67999999999999999987754
Q ss_pred -----eEeecCCCCCCCCCceeeEEEecCCC-CCeEEEEcCCCcEEEEEccCe-----EEEEeecCccCCCcEEEEEECC
Q 010324 384 -----LQTFKPPPPLRGGDASVNSVHLFPKN-PDHIVVCNKTSSIYIMTLQGQ-----VVKSFSSGKREGGDFVAACVSP 452 (513)
Q Consensus 384 -----~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~s~ 452 (513)
+..+. .+...+.+++|+|+. +.++++++.||.|++||+... ....+. .+.+...+.+++|+|
T Consensus 273 ~~~~~~~~~~------~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 273 SNVTILGRFD------YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT-HHKCGAAIRQTSFSR 345 (366)
T ss_dssp CCEEEEEEEE------CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC-CTTCCSCEEEEEECT
T ss_pred cchheecccc------ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc-ccccCCceEEEEeCC
Confidence 23332 456678899999982 389999999999999999842 222333 233367899999999
Q ss_pred CCCEEEEEecCceEEEEECCC
Q 010324 453 KGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 453 ~~~~l~~g~~dg~i~iwd~~~ 473 (513)
++++|++++.||.|++||+.+
T Consensus 346 ~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 346 DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TSSEEEEEETTSEEEEEEC--
T ss_pred CCCeEEEEeCCCEEEEEEecC
Confidence 999999999999999999853
No 93
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=9.9e-34 Score=276.58 Aligned_cols=244 Identities=19% Similarity=0.282 Sum_probs=210.0
Q ss_pred cccCCccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCC----------cceeeecccccccCeEEEEEccCCC-EEEEeeC
Q 010324 260 FMMHDETVLCIEFSRD-SEMLASGSQDGKIKVWRIRS----------GQCLRRLERAHSEGVTSLVFSRDGS-QILSTSF 327 (513)
Q Consensus 260 ~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~ 327 (513)
..+|.+.|++++|+|+ +.+|++++.||.|++||+.+ ......+. .|...|.+++|+|++. +|++|+.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEEeC
Confidence 4569999999999997 78999999999999999987 45666665 7999999999999988 9999999
Q ss_pred CCcEEEEecCCCce-------eeEecccccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCC---ceeEeecCCCCCCCC
Q 010324 328 DSTARIHGLKSGKL-------LKEFRGHSSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKST---DCLQTFKPPPPLRGG 396 (513)
Q Consensus 328 dg~i~i~d~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~ 396 (513)
||.|++||+.++.. ...+..|...|.+++|+| ++..|++++.||.|++||++++ .....+. .|
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~------~~ 276 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD------AH 276 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE------CC
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee------cC
Confidence 99999999987422 455678999999999999 6789999999999999999987 3444443 56
Q ss_pred CceeeEEEecCCCCCeEEEEcCCCcEEEEEccC--eEEEEeecCccCCCcEEEEEECCCCC-EEEEEecCceEEEEECCC
Q 010324 397 DASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--QVVKSFSSGKREGGDFVAACVSPKGE-WIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 397 ~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~ 473 (513)
...+++++|+|+++.++++++.+|.|++||++. ..+..+.. +...+.+++|+|+++ ++++++.||.|++||+..
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~---h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC---CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec---CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 788999999999877899999999999999984 33444443 466799999999995 689999999999999987
Q ss_pred --------------ceeeEeeecccCCeEEEEEcCCCC-EEEEEECCCeEEeccC
Q 010324 474 --------------GKLEHLMKVHEKDVIGVTHHPHRN-LLATYGEDCTMKLWKP 513 (513)
Q Consensus 474 --------------~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iWdp 513 (513)
.+++..+.+|...|++++|+|+++ +|++++.||.|+||++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 366777888999999999999998 9999999999999974
No 94
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-33 Score=266.11 Aligned_cols=269 Identities=16% Similarity=0.205 Sum_probs=228.3
Q ss_pred cccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEE
Q 010324 189 TAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVL 268 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~ 268 (513)
.......+|+.........+. +|...|.+++|+|++++|++++.||.|+ +||+.+++....+. |...|.
T Consensus 51 ~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~---------~~~~v~ 119 (369)
T 3zwl_B 51 SKDSSASVWYSLNGERLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIK-LWDVSNGQCVATWK---------SPVPVK 119 (369)
T ss_dssp ESSSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEE-EEETTTCCEEEEEE---------CSSCEE
T ss_pred eCCCEEEEEeCCCchhhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCcEEEEee---------cCCCeE
Confidence 334455677777777777776 8999999999999999999999999996 99999887665443 788999
Q ss_pred EEEEcCCCCEEEEEeCC-----CcEEEEEcCCccee-----------eeccccccc--CeEEEEEccCCCEEEEeeCCCc
Q 010324 269 CIEFSRDSEMLASGSQD-----GKIKVWRIRSGQCL-----------RRLERAHSE--GVTSLVFSRDGSQILSTSFDST 330 (513)
Q Consensus 269 ~l~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~-----------~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~ 330 (513)
+++|+|+++++++++.+ |.|++||+.++... ..+. .+.. .+.+++|+|++++|++++.||.
T Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 198 (369)
T 3zwl_B 120 RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-THEGLDAATVAGWSTKGKYIIAGHKDGK 198 (369)
T ss_dssp EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CCTTCCCEEEEEECGGGCEEEEEETTSE
T ss_pred EEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CCcCccceeEEEEcCCCCEEEEEcCCCE
Confidence 99999999999999998 99999999876432 2222 3444 8999999999999999999999
Q ss_pred EEEEecCC-CceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC
Q 010324 331 ARIHGLKS-GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN 409 (513)
Q Consensus 331 i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (513)
|++||+++ ++.+..+..|...|.+++|+|++++|++++.||.|++||+++++....+. +...+.++.|+|++
T Consensus 199 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~ 271 (369)
T 3zwl_B 199 ISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-------TDCPLNTAVITPLK 271 (369)
T ss_dssp EEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------CSSCEEEEEECSSS
T ss_pred EEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-------CCCCceeEEecCCC
Confidence 99999998 78888899999999999999999999999999999999999999888876 45689999999988
Q ss_pred CCeEEEEcCCC--------------cEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc
Q 010324 410 PDHIVVCNKTS--------------SIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 410 ~~~l~~~~~~~--------------~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 474 (513)
..+++++.++ .+++||.. +.....+.. +...+.+++|+|++++|++++.||.|++|++.++
T Consensus 272 -~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 272 -EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG---HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp -SEEEEEECCC-------------CEEEEEETTTCCEEEEEEC---CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred -ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec---ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 7788887777 89999997 455555543 4567999999999999999999999999999876
Q ss_pred eeeEee
Q 010324 475 KLEHLM 480 (513)
Q Consensus 475 ~~~~~~ 480 (513)
.....+
T Consensus 348 ~~~~~~ 353 (369)
T 3zwl_B 348 YFDFKY 353 (369)
T ss_dssp HHTCCC
T ss_pred cchhHH
Confidence 554433
No 95
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.9e-32 Score=268.25 Aligned_cols=284 Identities=13% Similarity=0.174 Sum_probs=238.7
Q ss_pred ccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 212 TKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
+...+.+++|+|++.++++++.++.|+ +||..+++...... ...+.+|...|.+++|+|++.++++++.|+.|++|
T Consensus 121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~-~~d~~~g~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~ 196 (433)
T 3bws_A 121 TGFQPKSVRFIDNTRLAIPLLEDEGMD-VLDINSGQTVRLSP---PEKYKKKLGFVETISIPEHNELWVSQMQANAVHVF 196 (433)
T ss_dssp CSSCBCCCEESSSSEEEEEBTTSSSEE-EEETTTCCEEEECC---CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred CCCCceEEEEeCCCeEEEEeCCCCeEE-EEECCCCeEeeecC---cccccccCCceeEEEEcCCCEEEEEECCCCEEEEE
Confidence 345677999999888888888999996 99999887654322 12345689999999999999999999999999999
Q ss_pred EcCCcceeeecccccccCeEEEEEccCCCEEEEe-eCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEe--
Q 010324 292 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS-- 368 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-- 368 (513)
|+.+++.+..+. .|...+.+++|+|+++.++++ +.|+.|++||+++++.+..+..+ ..+.+++|+|+++++++++
T Consensus 197 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~ 274 (433)
T 3bws_A 197 DLKTLAYKATVD-LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFS 274 (433)
T ss_dssp ETTTCCEEEEEE-CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEE
T ss_pred ECCCceEEEEEc-CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECC
Confidence 999999888886 788899999999999988655 47999999999999888887754 4599999999999999988
Q ss_pred ------CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccC
Q 010324 369 ------SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKRE 441 (513)
Q Consensus 369 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~ 441 (513)
.||.|++||+++++....+. +...+.+++|+|++..++++++.++.+++||+. +.....+. +
T Consensus 275 ~~~~~~~dg~i~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~----~ 343 (433)
T 3bws_A 275 ASNQESGGGRLGIYSMDKEKLIDTIG-------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP----V 343 (433)
T ss_dssp SCTTCSCCEEEEEEETTTTEEEEEEE-------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE----C
T ss_pred CCccccCCCeEEEEECCCCcEEeecc-------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec----C
Confidence 58899999999987766653 344788999999986677888999999999998 44444443 2
Q ss_pred CCcEEEEEECCCCCEEEEEec---------------CceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEEC-C
Q 010324 442 GGDFVAACVSPKGEWIYCVGE---------------DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE-D 505 (513)
Q Consensus 442 ~~~~~~~~~s~~~~~l~~g~~---------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-d 505 (513)
...+..++|+|+|+++++++. ||.|++||..+++.+..+.. ...+.+++|+|++++|++++. |
T Consensus 344 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d 422 (433)
T 3bws_A 344 FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLD 422 (433)
T ss_dssp SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTT
T ss_pred CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCC
Confidence 456889999999999998886 57999999999999888876 457999999999999988875 9
Q ss_pred CeEEeccC
Q 010324 506 CTMKLWKP 513 (513)
Q Consensus 506 g~i~iWdp 513 (513)
+.|++|+.
T Consensus 423 ~~i~v~~~ 430 (433)
T 3bws_A 423 HQIRVYRR 430 (433)
T ss_dssp TEEEEEEE
T ss_pred CeEEEEEe
Confidence 99999973
No 96
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=267.52 Aligned_cols=248 Identities=17% Similarity=0.233 Sum_probs=208.1
Q ss_pred ccccCCccEEEEEEcCCCCEEE-EEeC---CCcEEEEEcCCcceeeecccccccCeEEEEEccC---CCEEEEeeCCCcE
Q 010324 259 TFMMHDETVLCIEFSRDSEMLA-SGSQ---DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD---GSQILSTSFDSTA 331 (513)
Q Consensus 259 ~~~~h~~~v~~l~~~~~~~~l~-s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i 331 (513)
.+.+|...|.+++|+|++..++ +|+. ||.|++||+.+++........|...|.+++|+|+ +.+|++|+.||.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 3456999999999999986554 5555 8999999999988766655578999999999998 6999999999999
Q ss_pred EEEecCCCc-eeeEecccccceeEEEE------ccCCCEEEEEeCCCcEEEEeCCCCc-eeEeecCCCCCCCCCceeeEE
Q 010324 332 RIHGLKSGK-LLKEFRGHSSYVNDAIF------TNDGSRVVTASSDCTVKVWDLKSTD-CLQTFKPPPPLRGGDASVNSV 403 (513)
Q Consensus 332 ~i~d~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~ 403 (513)
++||+.+++ .+..+.+|...|.++.| +|++++|++++.||.|++||++++. ....+..... .....+.++
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~v~~~ 170 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG--ENKRDCWTV 170 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT--SCCCCEEEE
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC--CCCCceEEE
Confidence 999999988 88889999999999955 6889999999999999999999886 5666553321 224478888
Q ss_pred E----ecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECC---CCCEEEEEecCceEEEEECCCcee
Q 010324 404 H----LFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSP---KGEWIYCVGEDRNLYCFSHQSGKL 476 (513)
Q Consensus 404 ~----~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~g~~dg~i~iwd~~~~~~ 476 (513)
. |+|++ ..+++++.++.|++||++......... +...+.+++|+| ++.++++|+.||.|++||+.+++.
T Consensus 171 ~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 171 AFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRWETN---IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP 246 (357)
T ss_dssp EEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET
T ss_pred EEEeccCCCC-CEEEEEccCCeEEEEECccCceeeecC---CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc
Confidence 8 56665 899999999999999998554433322 356799999999 999999999999999999998876
Q ss_pred eEeee-----cccCCeEEEEEcCCCC-EEEEEECCCeEEecc
Q 010324 477 EHLMK-----VHEKDVIGVTHHPHRN-LLATYGEDCTMKLWK 512 (513)
Q Consensus 477 ~~~~~-----~h~~~v~~~~~~p~~~-~l~s~~~dg~i~iWd 512 (513)
...+. +|...|++++|+|+++ +|++++.||.|++||
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 65554 8999999999999998 899999999999998
No 97
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.6e-33 Score=267.84 Aligned_cols=283 Identities=17% Similarity=0.242 Sum_probs=202.8
Q ss_pred cccCceeEEEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC---CCEEEEEeCCC
Q 010324 211 GTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD---SEMLASGSQDG 286 (513)
Q Consensus 211 ~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~dg 286 (513)
+|...|.+++|+| ++++|++|+.||.|+ +||+.+++....+. +...+.++.|+|. +.++++++.||
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~-iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLK-VWDTNTLQTADVFN---------FEETVYSHHMSPVSTKHCLVAVGTRGP 166 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEE-EEETTTTEEEEEEE---------CSSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEE-EeeCCCCccceecc---------CCCceeeeEeecCCCCCcEEEEEcCCC
Confidence 5999999999999 788999999999997 99999887655443 6788999999994 44999999999
Q ss_pred cEEEEEcCCcceeeecccccccCeEEEEEccCCC-EEEEeeCCCcEEEEecCCCc-eeeEe---------------cccc
Q 010324 287 KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS-QILSTSFDSTARIHGLKSGK-LLKEF---------------RGHS 349 (513)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~ 349 (513)
.|++||+.+++.+..+. .|...|.+++|+|++. .+++|+.||.|++||++++. .+..+ ..|.
T Consensus 167 ~v~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (408)
T 4a11_B 167 KVQLCDLKSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN 245 (408)
T ss_dssp SEEEEESSSSCCCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCS
T ss_pred eEEEEeCCCcceeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccccc
Confidence 99999999999888886 7999999999999998 58899999999999998765 33333 4688
Q ss_pred cceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-
Q 010324 350 SYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ- 428 (513)
Q Consensus 350 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~- 428 (513)
..|.+++|+|++++|++++.||.|++||+++++............. .......+.......+++++.++.|++||+.
T Consensus 246 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 323 (408)
T 4a11_B 246 GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNS--KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS 323 (408)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCC--SSCCCCEECCSSSSCEEEEEETTEEEEEETTT
T ss_pred CceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccc--cccceeEEecCCCceEEEEecCCEEEEEECcC
Confidence 8999999999999999999999999999998876544432221111 1112223333444677888889999999998
Q ss_pred CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcC-CCCEEEEEECCCe
Q 010324 429 GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP-HRNLLATYGEDCT 507 (513)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~dg~ 507 (513)
+..+..+.. +...+.+++|+|++++|++|+.||.|++||+.+++.+.....+.. ...+.| ....+.+++.|+.
T Consensus 324 ~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 397 (408)
T 4a11_B 324 GEQITMLKG---HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGG 397 (408)
T ss_dssp CCEEEEECC---CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------
T ss_pred Ccceeeecc---CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCc
Confidence 555555543 457799999999999999999999999999999887765543322 233444 4455667788999
Q ss_pred EEecc
Q 010324 508 MKLWK 512 (513)
Q Consensus 508 i~iWd 512 (513)
+++|+
T Consensus 398 ~~~W~ 402 (408)
T 4a11_B 398 TSAWS 402 (408)
T ss_dssp -----
T ss_pred eeecC
Confidence 99997
No 98
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5e-33 Score=267.68 Aligned_cols=273 Identities=17% Similarity=0.232 Sum_probs=214.9
Q ss_pred ccCcccccccccccCcccceeeeec-cccCceeEEEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccC
Q 010324 186 FRGTAAMKQDVEDMYPTTLSHTIKF-GTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMH 263 (513)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h 263 (513)
+.+.......+|+.........+.. +|...|.+++|+| ++++|++|+.||.|+ +||+.+.... .+ ....+|
T Consensus 90 ~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~-iwd~~~~~~~-~~-----~~~~~~ 162 (383)
T 3ei3_B 90 AVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT-LRDFSGSVIQ-VF-----AKTDSW 162 (383)
T ss_dssp EEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE-EEETTSCEEE-EE-----ECCCCS
T ss_pred EEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE-EEECCCCceE-EE-----eccCCC
Confidence 3334445566777776666666653 7999999999999 789999999999997 9999853322 11 122336
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCC-EEEEeeCCCcEEEEecCC----
Q 010324 264 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS-QILSTSFDSTARIHGLKS---- 338 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~---- 338 (513)
...|.+++|+|++++|++|+.||.|++||+ +++.+..+. .|...|.+++|+|+++ ++++|+.|+.|++||+++
T Consensus 163 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 240 (383)
T 3ei3_B 163 DYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 240 (383)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST
T ss_pred CCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc
Confidence 688999999999999999999999999998 577777776 7999999999999999 999999999999999987
Q ss_pred CceeeEecccccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeEeecCCC-CCCCCC----------ceeeEEEec
Q 010324 339 GKLLKEFRGHSSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP-PLRGGD----------ASVNSVHLF 406 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~----------~~v~~~~~~ 406 (513)
+..+..+ +|...|.+++|+| ++++|++++.||.|++||+++++....+.... ....+. ..+..+.++
T Consensus 241 ~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s 319 (383)
T 3ei3_B 241 NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY 319 (383)
T ss_dssp TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECB
T ss_pred cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEec
Confidence 5566666 6899999999999 99999999999999999999887665554221 111122 334446666
Q ss_pred CCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 407 PKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 407 ~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
|++ .+ +++.|+.|++||+. +..+..+... .+...+..++|+|++++|++|+ ||.|++||+++
T Consensus 320 ~dg-~~--s~s~d~~i~iwd~~~~~~~~~l~~~-~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 320 PDD-QL--LLNDKRTIDIYDANSGGLVHQLRDP-NAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCT-TT--CTTCCCCEEEEETTTCCEEEEECBT-TBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCc-cc--ccCCCCeEEEEecCCCceeeeecCC-CCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 665 33 77899999999997 5555555432 2455677789999999999997 99999999864
No 99
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1e-33 Score=277.06 Aligned_cols=280 Identities=18% Similarity=0.246 Sum_probs=206.3
Q ss_pred eccCcccccccccccCcccceeeee-ccccCceeEEEECC-CCCEEEEEecCCeEEEEEecccccccccccccccccccc
Q 010324 185 LFRGTAAMKQDVEDMYPTTLSHTIK-FGTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMM 262 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~ 262 (513)
+..+.......+|+.........+. .+|.+.|++++|+| ++++|++|+.||+|+ +||+.++...... ....
T Consensus 135 lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~-iwd~~~~~~~~~~------~~~~ 207 (435)
T 4e54_B 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR-LQDFKGNILRVFA------SSDT 207 (435)
T ss_dssp EEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE-EEETTSCEEEEEE------CCSS
T ss_pred EEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE-EeeccCCceeEEe------ccCC
Confidence 3344445566677766554444333 38999999999998 789999999999997 9999765432211 1122
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCC-EEEEeeCCCcEEEEecCCCce
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS-QILSTSFDSTARIHGLKSGKL 341 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 341 (513)
+...+.+++|+|++.+|++|+.||.|++||+. ++.+..+. .|...|.+++|+|++. ++++|+.|+.|++||+++++.
T Consensus 208 ~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~ 285 (435)
T 4e54_B 208 INIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR-MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG 285 (435)
T ss_dssp CSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSB-CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS
T ss_pred CCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEe-cccceEEeeeecCCCceEEEEecCcceeeEEecccccc
Confidence 45678899999999999999999999999986 45566665 8999999999999876 678999999999999988765
Q ss_pred eeE---ecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE--
Q 010324 342 LKE---FRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC-- 416 (513)
Q Consensus 342 ~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-- 416 (513)
... ..+|...|++++|+|+|++|++++.||.|++||++++.....+............+....|+|.+ ..++++
T Consensus 286 ~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 364 (435)
T 4e54_B 286 KASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY-NLIVVGRY 364 (435)
T ss_dssp SSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS-SCEEEECC
T ss_pred cceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC-CEEEEEEc
Confidence 433 35688999999999999999999999999999999988777665433222222233344555554 333332
Q ss_pred ----------cCCCcEEEEEcc-CeEEEEeecCccCCCcEEEE-EECCCCCEEEEEecCceEEEEECCCceee
Q 010324 417 ----------NKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAA-CVSPKGEWIYCVGEDRNLYCFSHQSGKLE 477 (513)
Q Consensus 417 ----------~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 477 (513)
..++.|++||.. +..+..+... +...+.++ +|+|+|++|++|+ |+.|++|++++++..
T Consensus 365 ~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~--~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 365 PDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP--ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS--SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred CCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC--CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 344679999998 5555555433 34456665 6999999999876 889999999988753
No 100
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=256.86 Aligned_cols=241 Identities=20% Similarity=0.259 Sum_probs=210.7
Q ss_pred cccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEe
Q 010324 256 ADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHG 335 (513)
Q Consensus 256 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 335 (513)
....+.+|...|.+++| |++++|++|+.||.|++||+.++.....+. .|...|.+++|+|+++++++++.||.|++|+
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee-cCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 34467789999999999 999999999999999999999988877776 7899999999999999999999999999999
Q ss_pred cCCC---ceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCe
Q 010324 336 LKSG---KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH 412 (513)
Q Consensus 336 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (513)
+... +.+..+..|...|.++.| +++++++++.||.|++|| .+.....+. .+...+.++.+.|.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~------~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ------AHNASVWDAKVVSFSENK 157 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE------CCSSCEEEEEEEETTTTE
T ss_pred eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc------cCCCceeEEEEccCCCCE
Confidence 8654 567778889999999999 577999999999999999 555555554 567889999999966699
Q ss_pred EEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEE
Q 010324 413 IVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTH 492 (513)
Q Consensus 413 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 492 (513)
+++++.++.|++||.. .....+.. .+...+.+++|+|++. +++++.||.|++||+.+++.+..+.+|.+.|++++|
T Consensus 158 l~~~~~d~~i~i~d~~-~~~~~~~~--~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 233 (313)
T 3odt_A 158 FLTASADKTIKLWQND-KVIKTFSG--IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKL 233 (313)
T ss_dssp EEEEETTSCEEEEETT-EEEEEECS--SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEEECCCCEEEEecC-ceEEEEec--cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEE
Confidence 9999999999999943 33444433 2456799999999998 999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCeEEeccC
Q 010324 493 HPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 493 ~p~~~~l~s~~~dg~i~iWdp 513 (513)
+|++ .|++++.||.|++||.
T Consensus 234 ~~~~-~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 234 LPNG-DIVSCGEDRTVRIWSK 253 (313)
T ss_dssp CTTS-CEEEEETTSEEEEECT
T ss_pred ecCC-CEEEEecCCEEEEEEC
Confidence 9998 6889999999999984
No 101
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=294.36 Aligned_cols=250 Identities=20% Similarity=0.236 Sum_probs=211.3
Q ss_pred ccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC--CcceeeecccccccCeEEEEEccC--CCEEEEeeCCCcEEEE
Q 010324 259 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR--SGQCLRRLERAHSEGVTSLVFSRD--GSQILSTSFDSTARIH 334 (513)
Q Consensus 259 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~ 334 (513)
.+.+|.+.|++++|+|++++|++|+.||.|++||+. ++.....+. +|..+|.+++|+|+ +++|++|+.||.|++|
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 456799999999999999999999999999999998 556666775 89999999999988 9999999999999999
Q ss_pred ecCCCc--eeeEecccccceeEEEEccC--CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC--
Q 010324 335 GLKSGK--LLKEFRGHSSYVNDAIFTND--GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK-- 408 (513)
Q Consensus 335 d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 408 (513)
|+.+++ .+..+..|...|.+++|+|+ ++.+++|+.||.|++||++++....... ..++...+.++.|+|.
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~----~~~~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII----IDAHAIGVNSASWAPATI 158 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE----EECCSSCEEEEEECCCC-
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE----eecCCCceEEEEecCccc
Confidence 999886 67788889999999999999 9999999999999999999874322221 1257789999999995
Q ss_pred ----------CCCeEEEEcCCCcEEEEEccCe--EEEEeecCccCCCcEEEEEECCC---CCEEEEEecCceEEEEECCC
Q 010324 409 ----------NPDHIVVCNKTSSIYIMTLQGQ--VVKSFSSGKREGGDFVAACVSPK---GEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 409 ----------~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~g~~dg~i~iwd~~~ 473 (513)
++..+++++.||.|++||++.. ..........|...+.+++|+|+ ++++++|+.||.|++||+.+
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp --------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 3589999999999999999732 22222222345678999999999 99999999999999999988
Q ss_pred ce-----eeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 474 GK-----LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 474 ~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+. .......|.+.|++++|+|++.+|++|+.||.|++|+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp SSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred CCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 74 33444568899999999999999999999999999984
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.1e-33 Score=265.89 Aligned_cols=238 Identities=14% Similarity=0.115 Sum_probs=205.7
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc---eeeecccccccCeEEEEEccCCC-EEEEeeCCCcEEEEec
Q 010324 261 MMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ---CLRRLERAHSEGVTSLVFSRDGS-QILSTSFDSTARIHGL 336 (513)
Q Consensus 261 ~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~ 336 (513)
.+|.+.|.+++|+|++++|++++.||.|++||+.++. ...... .|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 3599999999999999999999999999999998877 233343 7899999999999999 9999999999999999
Q ss_pred -CCCceeeEecc--cccceeEEEEccCCCEEEEEeCCCcEEEEeCCC---------CceeEeecCCCCCCCCCceeeEEE
Q 010324 337 -KSGKLLKEFRG--HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS---------TDCLQTFKPPPPLRGGDASVNSVH 404 (513)
Q Consensus 337 -~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~v~~~~ 404 (513)
.+++. ..+.+ |...|.+++|+| ++.+++++.||.|++||+++ ++++..+. +...+.++.
T Consensus 87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~ 157 (342)
T 1yfq_A 87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-------VKNKIFTMD 157 (342)
T ss_dssp SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-------SCCCEEEEE
T ss_pred ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-------eCCceEEEE
Confidence 77754 67778 999999999999 99999999999999999986 55444332 567899999
Q ss_pred ecCCCCCeEEEEcCCCcEEEEEccC-eE--EEEeecCccCCCcEEEEEECC-CCCEEEEEecCceEEEEECCCc------
Q 010324 405 LFPKNPDHIVVCNKTSSIYIMTLQG-QV--VKSFSSGKREGGDFVAACVSP-KGEWIYCVGEDRNLYCFSHQSG------ 474 (513)
Q Consensus 405 ~~~~~~~~l~~~~~~~~i~i~d~~~-~~--~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~------ 474 (513)
|+|+. +++++.++.|++||++. .. ...... .+...+.+++|+| +++++++++.||.|++|++...
T Consensus 158 ~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 158 TNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEES--GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp ECSSE---EEEEESTTEEEEEESSCCTTCCCEEEEC--SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred ecCCc---EEEEeCCCeEEEEECCccccccceeeec--CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence 99864 99999999999999986 22 222222 3456799999999 9999999999999999999887
Q ss_pred eeeEeeecccC---------CeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 475 KLEHLMKVHEK---------DVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 475 ~~~~~~~~h~~---------~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+....+..|.. .|++++|+|++++|++++.||.|++||.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 77788888865 9999999999999999999999999984
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.6e-33 Score=271.37 Aligned_cols=256 Identities=21% Similarity=0.258 Sum_probs=213.2
Q ss_pred cccCceeEEEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCC-CEEEEEeCCCcE
Q 010324 211 GTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS-EMLASGSQDGKI 288 (513)
Q Consensus 211 ~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i 288 (513)
+|.+.|++++|+| ++++||+|+.||.|+ +||+.++....... .+...+.+|...|.+++|+|++ .+|++|+.||.|
T Consensus 79 ~h~~~V~~~~~~p~~~~~l~s~s~dg~v~-vw~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i 156 (402)
T 2aq5_A 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVM-VWEIPDGGLVLPLR-EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156 (402)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSEEE-EEECCTTCCSSCBC-SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCE
T ss_pred cCCCCEEEEEeCCCCCCEEEEEeCCCeEE-EEEccCCCCccccC-CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEE
Confidence 8999999999999 999999999999997 99998875432221 2334667799999999999998 699999999999
Q ss_pred EEEEcCCcceeeecc-cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe-cccccc-eeEEEEccCCCEEE
Q 010324 289 KVWRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF-RGHSSY-VNDAIFTNDGSRVV 365 (513)
Q Consensus 289 ~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~ 365 (513)
++||+.+++.+..+. ..|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..|.+. +.++.|+|++.+++
T Consensus 157 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (402)
T 2aq5_A 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILT 236 (402)
T ss_dssp EEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEE
T ss_pred EEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEE
Confidence 999999999988883 379999999999999999999999999999999999999888 677765 89999999999999
Q ss_pred EE---eCCCcEEEEeCCCCce-eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeE--EEEeecCc
Q 010324 366 TA---SSDCTVKVWDLKSTDC-LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV--VKSFSSGK 439 (513)
Q Consensus 366 ~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~ 439 (513)
+| +.|+.|++||++++.. ...... .+...+.++.|+|++..++++++.|+.|++|++.... +..+....
T Consensus 237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~ 311 (402)
T 2aq5_A 237 TGFSRMSERQVALWDTKHLEEPLSLQEL-----DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS 311 (402)
T ss_dssp EEECTTCCEEEEEEETTBCSSCSEEEEC-----CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC
T ss_pred EeccCCCCceEEEEcCccccCCceEEec-----cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc
Confidence 99 7899999999998664 222221 3456789999999985445677789999999998443 44444332
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCcee
Q 010324 440 REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKL 476 (513)
Q Consensus 440 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 476 (513)
+...+.+++|+|++.++++ .++.+++|++.++..
T Consensus 312 -~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 312 -SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp -CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred -cCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 4577899999999998764 567999999988754
No 104
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=267.95 Aligned_cols=267 Identities=10% Similarity=0.062 Sum_probs=209.3
Q ss_pred EECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC-----
Q 010324 220 RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR----- 294 (513)
Q Consensus 220 ~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~----- 294 (513)
.+.+++.++++|+.||.|+ +||+.+++....+. ...|.++.|+|+ +++++.|++|++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~-iwd~~~~~~~~~~~----------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~ 108 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALH-FTQLKDSKTITTIT----------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI 108 (343)
T ss_dssp SSSEEEEEEEEEEETTEEE-EEEESSSSCEEEEE----------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred hhcCCCCEEEEECCCCcEE-EEECCCCcEEEEEe----------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence 4556889999999999997 99999887665443 356778888888 9999999999999655
Q ss_pred ----CcceeeecccccccCeEEEEEcc--CCCEEEEeeCCCcEEEEecCCCceeeEecc-cccceeEEEEccCCCEEEEE
Q 010324 295 ----SGQCLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIHGLKSGKLLKEFRG-HSSYVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 295 ----~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 367 (513)
+++.+..+...|...|.+++|+| +++++++++.||.|++||+++++....... +...|.+++|+|++.++++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp EETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred eecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 55555555556778999999999 999999999999999999999988766643 45579999999999999999
Q ss_pred eCCCcEEEEeCCCCcee-EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-EEEEeecCccCCCcE
Q 010324 368 SSDCTVKVWDLKSTDCL-QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGKREGGDF 445 (513)
Q Consensus 368 ~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~ 445 (513)
+.||.|++||+++++.. ..+.. +|...|.+++|+|++ ..+++++ ++.|++||++.. ....+.....+...+
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~ 261 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPV-----DEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKT 261 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCC-----CTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----
T ss_pred cCCCEEEEEECCCCCCCccEEec-----cCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcceeecccccccccc
Confidence 99999999999998866 55542 377899999999987 7888888 559999999843 222222211111222
Q ss_pred --EEEEECCCCCEEEEEec-CceEEEEECCCceeeEeeecccCCeEEEEEcC---CCCEEEEEECCCeEEec
Q 010324 446 --VAACVSPKGEWIYCVGE-DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP---HRNLLATYGEDCTMKLW 511 (513)
Q Consensus 446 --~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~~~dg~i~iW 511 (513)
.+++|+|+|+++++++. |+.|++|++..+...... .++..++|+| +...+++++.||.+.++
T Consensus 262 ~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 262 GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred cceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 46999999999999998 999999999765433322 5677888888 77888888889888875
No 105
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.3e-32 Score=266.22 Aligned_cols=274 Identities=18% Similarity=0.259 Sum_probs=218.7
Q ss_pred ccccccccCcccceeeeec-cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEE
Q 010324 192 MKQDVEDMYPTTLSHTIKF-GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCI 270 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l 270 (513)
....+|+.......+.+.. +|...|+|++|+|+|++||+|+.||.|+ +||+.+++... .+.+|...+.++
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~-iWd~~~~~~~~--------~~~~h~~~v~~~ 195 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ-LWDVQQQKRLR--------NMTSHSARVGSL 195 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEE-EEETTTTEEEE--------EECCCSSCEEEE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEE-EEEcCCCcEEE--------EEeCCCCceEEE
Confidence 3456788877777777664 6788899999999999999999999997 99999887654 345699999998
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCccee-eecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc----eeeEe
Q 010324 271 EFSRDSEMLASGSQDGKIKVWRIRSGQCL-RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK----LLKEF 345 (513)
Q Consensus 271 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~ 345 (513)
+|+ +..|++|+.|+.+++||....... ..+. +|...+..+.|+|++.++++++.|+.+++|+..+++ .+...
T Consensus 196 s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~ 272 (420)
T 4gga_A 196 SWN--SYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF 272 (420)
T ss_dssp EEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEE
T ss_pred eeC--CCEEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeee
Confidence 885 679999999999999998875544 4444 899999999999999999999999999999998765 34566
Q ss_pred cccccceeEEEEccCCC-EEEEE--eCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE-cCCCc
Q 010324 346 RGHSSYVNDAIFTNDGS-RVVTA--SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC-NKTSS 421 (513)
Q Consensus 346 ~~~~~~v~~~~~~~~~~-~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~~~~ 421 (513)
..|...|.+++|+|++. .++++ +.|++|++||+.++.....+.. ...+.++.|+|++..+++++ +.|+.
T Consensus 273 ~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-------~~~v~~~~~~~~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 273 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-------HSQVCSILWSPHYKELISGHGFAQNQ 345 (420)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-------SSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-------ccceeeeeecCCCCeEEEEEecCCCE
Confidence 77889999999999665 45543 4799999999999998887753 35788999999884444433 37899
Q ss_pred EEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCe
Q 010324 422 IYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDV 487 (513)
Q Consensus 422 i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v 487 (513)
|++||+. +..+..+.. |...|.+++|+|+|++|++|+.||+|++||+....+......+...+
T Consensus 346 I~iwd~~~~~~v~~l~g---H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~ 409 (420)
T 4gga_A 346 LVIWKYPTMAKVAELKG---HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASA 409 (420)
T ss_dssp EEEEETTTCCEEEEECC---CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------
T ss_pred EEEEECCCCcEEEEEcC---CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCc
Confidence 9999998 556666543 56789999999999999999999999999998776655555454433
No 106
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=276.96 Aligned_cols=270 Identities=16% Similarity=0.218 Sum_probs=215.7
Q ss_pred EECCCCCEEEEEecCCeEEEEEecccccccccccccccccc-ccCCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCC--
Q 010324 220 RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETF-MMHDETVLCIEFSR-DSEMLASGSQDGKIKVWRIRS-- 295 (513)
Q Consensus 220 ~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~vwd~~~-- 295 (513)
.|+|+++.+++++ .|+.. ++.+. .+ .+|.+.|++++|+| ++++|++|+.||.|++||+.+
T Consensus 34 ~f~~~~~~~~~~~-------~w~~~-g~~~~--------~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~ 97 (437)
T 3gre_A 34 EFGPIQEIVRSPN-------MGNLR-GKLIA--------TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEII 97 (437)
T ss_dssp GGCCCCCCCCCCC-------GGGCC-CCEEE--------EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH
T ss_pred hcCCccccccccc-------ccccc-ceEEe--------eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccc
Confidence 4788888877664 37633 33332 33 56999999999999 999999999999999999977
Q ss_pred -cceee-ecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecC---CCceeeEecc------------cccceeEEE--
Q 010324 296 -GQCLR-RLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK---SGKLLKEFRG------------HSSYVNDAI-- 356 (513)
Q Consensus 296 -~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~------------~~~~v~~~~-- 356 (513)
+.... .....|...|.+++|+|++++|++|+.||.|++||+. +++....... +...+.++.
T Consensus 98 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 177 (437)
T 3gre_A 98 VGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAF 177 (437)
T ss_dssp TTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEE
T ss_pred cCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEE
Confidence 44221 2222589999999999999999999999999999994 5554443332 344566666
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEe
Q 010324 357 FTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSF 435 (513)
Q Consensus 357 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~ 435 (513)
+++++.++++++.||.|++||+++++.+..+... .|...|.+++|+|++ ..+++++.||.|++||++ +..+..+
T Consensus 178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~ 252 (437)
T 3gre_A 178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS----PRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSW 252 (437)
T ss_dssp ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC----GGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC----CCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEE
Confidence 5578999999999999999999999998888632 156799999999986 899999999999999998 5555555
Q ss_pred ecCccCCCcEEEEEEC----CCCCEEEEEecCceEEEEECCCceeeEeeec--------------------------ccC
Q 010324 436 SSGKREGGDFVAACVS----PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV--------------------------HEK 485 (513)
Q Consensus 436 ~~~~~~~~~~~~~~~s----~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--------------------------h~~ 485 (513)
... +...+.+++++ +++.++++|+.||.|++||+.+++.+..+.+ |..
T Consensus 253 ~~~--~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 330 (437)
T 3gre_A 253 SFG--DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLN 330 (437)
T ss_dssp BCT--TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGG
T ss_pred ecC--CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCC
Confidence 422 34578899655 5688999999999999999999988777664 455
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 486 DVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 486 ~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.|++++|+ ++++|++|+.||.|++||.
T Consensus 331 ~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 331 ALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp GGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred ceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 68889999 7789999999999999984
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=274.29 Aligned_cols=248 Identities=13% Similarity=0.253 Sum_probs=203.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc-----------eeeecccccc------------cCeEEEEEccCC
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ-----------CLRRLERAHS------------EGVTSLVFSRDG 319 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~~~~------------~~v~~~~~~~~~ 319 (513)
|.+.|.+++|+|+|++||+|+.||.|++||+.+++ ....+. +|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcCCC
Confidence 78999999999999999999999999999998876 355665 787 889999999998
Q ss_pred --CEEEEeeCCCcEEEEecCCCcee---------------------------------------eE-ecccccceeEEEE
Q 010324 320 --SQILSTSFDSTARIHGLKSGKLL---------------------------------------KE-FRGHSSYVNDAIF 357 (513)
Q Consensus 320 --~~l~~~~~dg~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~ 357 (513)
..|++++.||.|++||+.++... .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999765432 12 3578999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCC-CceeEeecC-CCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeE----
Q 010324 358 TNDGSRVVTASSDCTVKVWDLKS-TDCLQTFKP-PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV---- 431 (513)
Q Consensus 358 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---- 431 (513)
+|++++|+++ .||.|++||+++ +.....+.. +....+|...+.+++|+|+++..+++++.|+.|++||++...
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 899999999994 444443211 112346788999999999987899999999999999998433
Q ss_pred -EEEeecCcc---------CCCcEEEEEECCCCCEEEEEecCceEEEEECCC-ceeeEeeecccCC--------------
Q 010324 432 -VKSFSSGKR---------EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS-GKLEHLMKVHEKD-------------- 486 (513)
Q Consensus 432 -~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~-------------- 486 (513)
...+..... +...+.+++|+|+|++|++++. |.|++||+.+ ++++..+.+|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 344443221 1137999999999999999998 9999999997 8888889888642
Q ss_pred -eEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 487 -VIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 487 -v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+..++|+|++.+|++|+.||.|++||.
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEc
Confidence 334999999999999999999999984
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.8e-32 Score=260.28 Aligned_cols=278 Identities=14% Similarity=0.204 Sum_probs=210.7
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEE-EEEeCCCcEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML-ASGSQDGKIK 289 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~i~ 289 (513)
+|.+.|+|++|+|||++||+|+.+| ++ +|+..++...... +...+..+++.++++.+ ++++.|+.|+
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~-iw~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLKS-FE-IYNVHPVAHIMSQ----------EMRHLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSSE-EE-EEEETTEEEEEEE----------ECSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCE-EE-EEecCCcceeeee----------ecCCeEEEEEcCCCCEEEEEECCccEEE
Confidence 8999999999999999999998776 65 9998876543321 22357788899988877 4567789999
Q ss_pred EEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC-ceeeEecccccceeEEEEccCCCEEEE--
Q 010324 290 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTNDGSRVVT-- 366 (513)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~-- 366 (513)
+||+.+++.+..+. +...|.+++|+++. ++++ .|+.|++||+.++ +.+..+.. +...+++++ .++++
T Consensus 85 iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~s 154 (355)
T 3vu4_A 85 IWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSN 154 (355)
T ss_dssp EEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEE
T ss_pred EEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeC
Confidence 99999999988875 67799999998764 4444 3889999999988 66666654 344566776 56666
Q ss_pred EeCCCcEEEEeCCCCceeEe---------ecC-CCCCCCCCceeeEEEecCCCCCeEEEEcCCCc-EEEEEcc-CeEEEE
Q 010324 367 ASSDCTVKVWDLKSTDCLQT---------FKP-PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS-IYIMTLQ-GQVVKS 434 (513)
Q Consensus 367 ~~~dg~i~iwd~~~~~~~~~---------~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~-i~i~d~~-~~~~~~ 434 (513)
|+.||.|++||++++..... +.+ ...+.+|...|.+++|+|++ .++++++.|++ |++||++ +..+..
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 57899999999998651100 000 11234788999999999987 89999999998 9999998 666666
Q ss_pred eecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceee--Eee---------------------ecccCCeEEEE
Q 010324 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE--HLM---------------------KVHEKDVIGVT 491 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~---------------------~~h~~~v~~~~ 491 (513)
+..+ .+...+.+++|+|+|++|++++.|+.|++||+..+... ..+ ..+..+...++
T Consensus 234 ~~~g-~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (355)
T 3vu4_A 234 FRRG-LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIA 312 (355)
T ss_dssp EECT-TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEE
T ss_pred EEcC-CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEE
Confidence 6532 14578999999999999999999999999999765321 111 01122346799
Q ss_pred EcCCCCEEEEEECCCeEEecc
Q 010324 492 HHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 492 ~~p~~~~l~s~~~dg~i~iWd 512 (513)
|+|+++.+++++.||.+++|+
T Consensus 313 ~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 313 WISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp ESSSSEEEEEETTTTEEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999999996
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.1e-32 Score=267.11 Aligned_cols=260 Identities=19% Similarity=0.228 Sum_probs=213.2
Q ss_pred eeeccccCceeEEEECCC-CCEEEEEecCCeEEEEEeccccccccc--cccccccccccCCccEEEEEEcCCCC-EEEEE
Q 010324 207 TIKFGTKSHAECARFSPD-GQFLVSCSFDGFIEVVWDYLSGKLKKD--LQYQADETFMMHDETVLCIEFSRDSE-MLASG 282 (513)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~-g~~la~g~~dg~i~~iwd~~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~ 282 (513)
....+|.+.|++++|+|+ +.+||+|+.||.|+ +|++.+...... -.......+.+|...|.+++|+|++. +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~-vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVL-VFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEE-EEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEE-EEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 344589999999999997 78999999999996 999976311110 01223345667999999999999988 99999
Q ss_pred eCCCcEEEEEcCCcce-------eeecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCC---ceeeEecccccc
Q 010324 283 SQDGKIKVWRIRSGQC-------LRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSG---KLLKEFRGHSSY 351 (513)
Q Consensus 283 ~~dg~i~vwd~~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~ 351 (513)
+.||.|++||+.++.. ...+. .|...|.+++|+| ++..|++++.||.|++||++++ +.+..+..|...
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 9999999999987432 23343 7889999999999 7789999999999999999987 567778889999
Q ss_pred eeEEEEccCCC-EEEEEeCCCcEEEEeCCC-CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC
Q 010324 352 VNDAIFTNDGS-RVVTASSDCTVKVWDLKS-TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG 429 (513)
Q Consensus 352 v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 429 (513)
|++++|+|++. .+++|+.||.|++||+++ ...+..+. .|...+.+++|+|++..++++++.|+.|++||+..
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~------~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE------SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE------CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee------cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 99999999887 688999999999999998 44555554 56789999999999978899999999999999974
Q ss_pred eE------------EEEeecCccCCCcEEEEEECCCCC-EEEEEecCceEEEEECCCc
Q 010324 430 QV------------VKSFSSGKREGGDFVAACVSPKGE-WIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 430 ~~------------~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~ 474 (513)
.. ...+.....+...+..++|+|++. ++++++.||.|++|++..+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 10 012223334567799999999999 8999999999999998754
No 110
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-33 Score=290.86 Aligned_cols=254 Identities=20% Similarity=0.274 Sum_probs=211.1
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC--CCEEEEEeCCCc
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD--SEMLASGSQDGK 287 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~ 287 (513)
.+|.+.|++++|+|+|++|++|+.||.|+ +||+.++.. .....+.+|.++|.+++|+|+ +++|++|+.||.
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~-vwd~~~~~~------~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIK-IFEVEGETH------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEE-EEEEETTEE------EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEE-EEecCCCCC------ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 39999999999999999999999999997 999874322 122355679999999999998 999999999999
Q ss_pred EEEEEcCCcc--eeeecccccccCeEEEEEccC--CCEEEEeeCCCcEEEEecCCCc--eeeEecccccceeEEEEcc--
Q 010324 288 IKVWRIRSGQ--CLRRLERAHSEGVTSLVFSRD--GSQILSTSFDSTARIHGLKSGK--LLKEFRGHSSYVNDAIFTN-- 359 (513)
Q Consensus 288 i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~-- 359 (513)
|++||+.+++ .+..+. .|...|.+++|+|+ +..+++|+.||.|++||++++. ....+.+|...|.+++|+|
T Consensus 79 I~vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 79 VLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred EEEEECCCCccccccccc-CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence 9999999886 555554 79999999999999 9999999999999999998873 3456678899999999999
Q ss_pred -----------CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCC--CCeEEEEcCCCcEEEEE
Q 010324 360 -----------DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN--PDHIVVCNKTSSIYIMT 426 (513)
Q Consensus 360 -----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~~~~i~i~d 426 (513)
++..+++|+.||.|++||++++....... ....+|...|.+++|+|++ +..+++++.||.|++||
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE--EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee--eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 58999999999999999998874321111 1112678899999999994 58999999999999999
Q ss_pred ccCeE---EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 427 LQGQV---VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 427 ~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
+.... .........+...+.+++|+|+|+++++|+.||.|++|++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 98431 222233334567789999999999999999999999999874
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=5.8e-33 Score=267.56 Aligned_cols=237 Identities=13% Similarity=0.073 Sum_probs=178.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCcceee-----ecccccccCeEEEEEcc--------CCCEEEEeeCCCcEEEEec
Q 010324 270 IEFSRDSEMLASGSQDGKIKVWRIRSGQCLR-----RLERAHSEGVTSLVFSR--------DGSQILSTSFDSTARIHGL 336 (513)
Q Consensus 270 l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~i~d~ 336 (513)
..+++++.+|++++.|++|++||+.++.... .+ .+|...|.+++|+| |+++|++|+.|++|++||+
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~-~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGK-SGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTT-TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeeccc-CCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 3344466789999999999999998876532 23 48999999999998 7899999999999999999
Q ss_pred CCCceeeEecccccceeEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeEeecCC-------------------CCCCCC
Q 010324 337 KSGKLLKEFRGHSSYVNDAIFTNDGS-RVVTASSDCTVKVWDLKSTDCLQTFKPP-------------------PPLRGG 396 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~~~~~ 396 (513)
+++..+..+..|...|.+++|+|++. +|++++.||+|++||+++++........ ....++
T Consensus 174 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 253 (393)
T 4gq1_A 174 TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI 253 (393)
T ss_dssp ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC
T ss_pred CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc
Confidence 99888888888999999999999874 7999999999999999987654332211 112356
Q ss_pred CceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEEEeecCcc---------------CCCcEEEEEECC--CCCEEE
Q 010324 397 DASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKR---------------EGGDFVAACVSP--KGEWIY 458 (513)
Q Consensus 397 ~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~---------------~~~~~~~~~~s~--~~~~l~ 458 (513)
...+.++.|++.++..+++++.|+.+++||+.. .....+..... ........+++| ++.+++
T Consensus 254 ~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (393)
T 4gq1_A 254 ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT 333 (393)
T ss_dssp SSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE
T ss_pred cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEE
Confidence 778899999865569999999999999999873 22222211100 001112233333 445777
Q ss_pred EEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCe
Q 010324 459 CVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCT 507 (513)
Q Consensus 459 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 507 (513)
+|+.||.|++||..+++....+..|..+|++++|+|+|++||+++.||.
T Consensus 334 sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 334 AHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp EETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred EECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 8889999999999999998888899999999999999999999998875
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=9.4e-31 Score=252.51 Aligned_cols=263 Identities=16% Similarity=0.182 Sum_probs=218.0
Q ss_pred CEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCcceeeeccc
Q 010324 226 QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML-ASGSQDGKIKVWRIRSGQCLRRLER 304 (513)
Q Consensus 226 ~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~ 304 (513)
..+++++.|+.|+ +||+.+++....+. +...+.+++|+|+++++ ++++.|+.|++||+.+++.+..+.
T Consensus 3 ~l~vs~~~d~~v~-v~d~~~~~~~~~~~---------~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~- 71 (391)
T 1l0q_A 3 FAYIANSESDNIS-VIDVTSNKVTATIP---------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP- 71 (391)
T ss_dssp EEEEEETTTTEEE-EEETTTTEEEEEEE---------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred EEEEEcCCCCEEE-EEECCCCeEEEEee---------cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE-
Confidence 4688899999997 99999887665443 33458999999999977 566689999999999999888876
Q ss_pred ccccCeEEEEEccCCCEEEEe-eCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEE-EEEeCCCcEEEEeCCCCc
Q 010324 305 AHSEGVTSLVFSRDGSQILST-SFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRV-VTASSDCTVKVWDLKSTD 382 (513)
Q Consensus 305 ~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~ 382 (513)
+...+.+++|+|++++++++ +.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++
T Consensus 72 -~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 149 (391)
T 1l0q_A 72 -AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA 149 (391)
T ss_dssp -CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred -CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 33489999999999988655 46799999999999888877754 458999999999977 677789999999999998
Q ss_pred eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-EEEEeecCccCCCcEEEEEECCCCCEEEEEe
Q 010324 383 CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGKREGGDFVAACVSPKGEWIYCVG 461 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 461 (513)
....+.. ...+.+++|+|++..++++++.++.|++||+... ....+. +...+..++|+|+|+++++++
T Consensus 150 ~~~~~~~-------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 150 VINTVSV-------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp EEEEEEC-------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEE
T ss_pred EEEEEec-------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCCEEEEEe
Confidence 8877653 2356899999998555578889999999999854 333333 234688999999999999988
Q ss_pred ---cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEE-EEEECCCeEEeccC
Q 010324 462 ---EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLL-ATYGEDCTMKLWKP 513 (513)
Q Consensus 462 ---~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~~~dg~i~iWdp 513 (513)
.++.|++||+.+++.+..+..|. .+.+++|+|+++.+ ++++.|+.|++||.
T Consensus 219 ~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp ECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred cCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 68999999999999988888765 57899999999877 67788999999984
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-32 Score=260.91 Aligned_cols=260 Identities=11% Similarity=0.109 Sum_probs=203.7
Q ss_pred eeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCC
Q 010324 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG 286 (513)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 286 (513)
.+. +|...|++++|+|+| .++.+. +|+.+... .+.. .|...|.+++|||+|.+||+++.||
T Consensus 47 ~l~-gh~~~v~~V~FsPdg-------~~~~~~-~~~~~~~~---~~~~-------~~~~~V~~vawSPdG~~LAs~s~dg 107 (588)
T 2j04_A 47 DIN-CNSKNLFHVKEFPLE-------FENKLD-FELAQQNG---LLNS-------QPVCYPRVCKPSPIDDWMAVLSNNG 107 (588)
T ss_dssp CCS-SBGGGTEEEEEECCC-------CCCTTT-TSCCCSSC---SSTT-------SCSCCEEEEEECSSSSCEEEEETTS
T ss_pred eec-CCCccEEEEEECCCC-------CcceEE-EEeCCCce---Eeec-------CCCCcEEEEEECCCCCEEEEEeCCC
Confidence 444 999999999999999 466554 55533222 1111 2678999999999999999999999
Q ss_pred cEEEEEcCCcceeeeccccccc-----CeEEEEEccCCCEEEEeeCCCcEEEEecCCCce-------eeEe----ccccc
Q 010324 287 KIKVWRIRSGQCLRRLERAHSE-----GVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL-------LKEF----RGHSS 350 (513)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~----~~~~~ 350 (513)
.|++||..+ .+..+. |.. .+.+++|+|||++|++|+.||+|++||+.++.. +.++ .+|..
T Consensus 108 ~V~iwd~~~--~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~ 183 (588)
T 2j04_A 108 NVSVFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD 183 (588)
T ss_dssp CEEEEETTE--EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC
T ss_pred cEEEEeCCc--eeeecc--CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc
Confidence 999999544 555554 443 599999999999999999999999999988753 5665 56778
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCcee---EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEc
Q 010324 351 YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCL---QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL 427 (513)
Q Consensus 351 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~ 427 (513)
.|.+++|+|+| +++++.|++|++||+..+... .++.. +|...|.+++|+ + ..+++++ ++.|++||+
T Consensus 184 ~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-----~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~ 252 (588)
T 2j04_A 184 WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-----ASRRKITDLKIV--D-YKVVLTC-PGYVHKIDL 252 (588)
T ss_dssp CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC-----CCSSCCCCEEEE--T-TEEEEEC-SSEEEEEET
T ss_pred cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc-----cccCcEEEEEEE--C-CEEEEEe-CCeEEEEEC
Confidence 99999999999 889999999999999887632 33321 456789999998 3 7888887 699999999
Q ss_pred cCeEEEEeecCccCCCcEEEEEE--CCCCCEEEEEecCceEEEEECCCc-----------------------eeeEeeec
Q 010324 428 QGQVVKSFSSGKREGGDFVAACV--SPKGEWIYCVGEDRNLYCFSHQSG-----------------------KLEHLMKV 482 (513)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~~g~~dg~i~iwd~~~~-----------------------~~~~~~~~ 482 (513)
.+.....+..+ |...+..+++ +|++..++++++||+ ++|....- .....+.+
T Consensus 253 ~~~~~~~~~~g--h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~ 329 (588)
T 2j04_A 253 KNYSISSLKTG--SLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET 329 (588)
T ss_dssp TTTEEEEEECS--CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC
T ss_pred CCCeEEEEEcC--CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc
Confidence 97776555543 5677899999 999999999999999 99987421 11112222
Q ss_pred ccCCeEEEEEcCCCCEEEEEEC
Q 010324 483 HEKDVIGVTHHPHRNLLATYGE 504 (513)
Q Consensus 483 h~~~v~~~~~~p~~~~l~s~~~ 504 (513)
...|.+++|+|||..+|+++.
T Consensus 330 -~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 330 -TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -EEEEEEEEECTTSSEEEEEEE
T ss_pred -ceEEEEEEECCCCCEEEEEEe
Confidence 345899999999999999873
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=255.23 Aligned_cols=245 Identities=22% Similarity=0.347 Sum_probs=201.8
Q ss_pred cccccCCccEEEEEEcCC---CCEEEEEeCCCcEEEEEcCC-cceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEE
Q 010324 258 ETFMMHDETVLCIEFSRD---SEMLASGSQDGKIKVWRIRS-GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARI 333 (513)
Q Consensus 258 ~~~~~h~~~v~~l~~~~~---~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 333 (513)
..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+......|...|.+++|+|++++|++++.||.|++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 356679999999999998 69999999999999999997 55553333489999999999999999999999999999
Q ss_pred EecCCCceeeEecccccceeEEEE--ccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCC
Q 010324 334 HGLKSGKLLKEFRGHSSYVNDAIF--TNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 411 (513)
Q Consensus 334 ~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (513)
||+++++.+. +..|...|.+++| +|+++++++++.||.|++||+++++.+..+... ..+.++.+.+ .
T Consensus 113 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~~---~ 181 (368)
T 3mmy_A 113 WDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-------ERCYCADVIY---P 181 (368)
T ss_dssp EETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS-------SCEEEEEEET---T
T ss_pred EEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC-------CCceEEEecC---C
Confidence 9999888765 5569999999999 899999999999999999999999888877633 2455666554 5
Q ss_pred eEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCE----EEEEecCceEEEEECCCc---eeeEeeeccc
Q 010324 412 HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEW----IYCVGEDRNLYCFSHQSG---KLEHLMKVHE 484 (513)
Q Consensus 412 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----l~~g~~dg~i~iwd~~~~---~~~~~~~~h~ 484 (513)
.+++++.++.+.+|+++..................++++.++... +++++.||.|++||+... .....+.+|.
T Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 182 MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 888999999999999985433322222223344555555554443 999999999999999887 5567777776
Q ss_pred C------------CeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 485 K------------DVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 485 ~------------~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
. +|++++|+|++++|++++.||.|++||.
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence 6 7999999999999999999999999984
No 115
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5e-31 Score=258.04 Aligned_cols=272 Identities=21% Similarity=0.356 Sum_probs=213.1
Q ss_pred CcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccE
Q 010324 188 GTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETV 267 (513)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v 267 (513)
+.......+|+.........+. +|.+.|.+++| ++++|++|+.||.|+ +||+.+++... .+.+|...|
T Consensus 149 g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~~dg~i~-vwd~~~~~~~~--------~~~~h~~~v 216 (435)
T 1p22_A 149 GLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVR-VWDVNTGEMLN--------TLIHHCEAV 216 (435)
T ss_dssp EESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEE-EEESSSCCEEE--------EECCCCSCE
T ss_pred EeCCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEE--CCCEEEEEcCCCeEE-EEECCCCcEEE--------EEcCCCCcE
Confidence 3334455677777777777776 89999999999 788999999999997 99999887554 344699999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCccee---eecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeE
Q 010324 268 LCIEFSRDSEMLASGSQDGKIKVWRIRSGQCL---RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE 344 (513)
Q Consensus 268 ~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 344 (513)
.+++|++ ..+++|+.||.|++||+.++... ..+ .+|...|.+++| +++++++|+.||.|++||+++++.+..
T Consensus 217 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~ 291 (435)
T 1p22_A 217 LHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT 291 (435)
T ss_dssp EEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEe-cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE
Confidence 9999974 59999999999999999988765 344 378999999999 688999999999999999999999999
Q ss_pred ecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEE
Q 010324 345 FRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYI 424 (513)
Q Consensus 345 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i 424 (513)
+.+|...|.++.++ ++++++|+.||.|++||+++++.+..+. +|...+.++.+ ++..+++++.||.|++
T Consensus 292 ~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~~~~---~~~~l~sg~~dg~i~v 360 (435)
T 1p22_A 292 LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE------GHEELVRCIRF---DNKRIVSGAYDGKIKV 360 (435)
T ss_dssp EECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC------CCSSCEEEEEC---CSSEEEEEETTSCEEE
T ss_pred EcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEe------CCcCcEEEEEe---cCCEEEEEeCCCcEEE
Confidence 99999999999995 6799999999999999999999888876 57788999998 3489999999999999
Q ss_pred EEccCe----------EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEc
Q 010324 425 MTLQGQ----------VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHH 493 (513)
Q Consensus 425 ~d~~~~----------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 493 (513)
||+... .+..+. .+...+.+++| ++.++++|+.||.|++||+.++....... ...+..++.|.
T Consensus 361 wd~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 361 WDLVAALDPRAPAGTLCLRTLV---EHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp EEHHHHTSTTSCTTTTEEEEEC---CCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred EECCCCCCccccccchheeecc---CCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence 999732 344443 34567888888 78899999999999999998876554433 23345555554
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.1e-29 Score=245.05 Aligned_cols=296 Identities=16% Similarity=0.211 Sum_probs=229.8
Q ss_pred cccccccccCcccceeeeeccccCceeEEEECCCCCEE-EEEecCCeEEEEEeccccccccccccccccccccCCccEEE
Q 010324 191 AMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFL-VSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLC 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-a~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~ 269 (513)
.....+++....+..+.+. +| ..+.+++|+|+|+++ ++++.|+.|+ +||..+++....+. +...+.+
T Consensus 11 d~~v~v~d~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~~~~~d~~i~-v~d~~~~~~~~~~~---------~~~~v~~ 78 (391)
T 1l0q_A 11 SDNISVIDVTSNKVTATIP-VG-SNPMGAVISPDGTKVYVANAHSNDVS-IIDTATNNVIATVP---------AGSSPQG 78 (391)
T ss_dssp TTEEEEEETTTTEEEEEEE-CS-SSEEEEEECTTSSEEEEEEGGGTEEE-EEETTTTEEEEEEE---------CSSSEEE
T ss_pred CCEEEEEECCCCeEEEEee-cC-CCcceEEECCCCCEEEEECCCCCeEE-EEECCCCeEEEEEE---------CCCCccc
Confidence 3345566666666666665 44 458999999999987 6777999997 99999887765443 3348999
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEE-EEeeCCCcEEEEecCCCceeeEecc
Q 010324 270 IEFSRDSEMLASGS-QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI-LSTSFDSTARIHGLKSGKLLKEFRG 347 (513)
Q Consensus 270 l~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~ 347 (513)
++|+|++++|++++ .++.|++||+.+++.+..+. +...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence 99999999886554 57999999999999887775 45678999999999987 6778899999999999998888876
Q ss_pred cccceeEEEEccCCCEE-EEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc---CCCcEE
Q 010324 348 HSSYVNDAIFTNDGSRV-VTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN---KTSSIY 423 (513)
Q Consensus 348 ~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~~~~i~ 423 (513)
+. .+.+++|+|+++++ ++++.++.|++||+++++....+. +...+.+++++|++ ..+++++ .++.|+
T Consensus 157 ~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 157 GR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------VEAAPSGIAVNPEG-TKAYVTNVDKYFNTVS 227 (391)
T ss_dssp CS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------CSSEEEEEEECTTS-SEEEEEEECSSCCEEE
T ss_pred CC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-------cCCCccceEECCCC-CEEEEEecCcCCCcEE
Confidence 54 47999999999987 567788999999999988777765 34578899999988 5566555 789999
Q ss_pred EEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEE-EEEecCceEEEEECCCceeeEeeecccCCeE---EEEEcC----
Q 010324 424 IMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWI-YCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI---GVTHHP---- 494 (513)
Q Consensus 424 i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~---~~~~~p---- 494 (513)
+||+. +..+..+.. ...+.+++|+|+|+++ ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|
T Consensus 228 ~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (391)
T 1l0q_A 228 MIDTGTNKITARIPV----GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPV 303 (391)
T ss_dssp EEETTTTEEEEEEEC----CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCC
T ss_pred EEECCCCeEEEEEec----CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccc
Confidence 99998 445544443 2347889999999988 5667899999999999999888877654421 122222
Q ss_pred --------CC----------CEEEEEECCCeEEeccC
Q 010324 495 --------HR----------NLLATYGEDCTMKLWKP 513 (513)
Q Consensus 495 --------~~----------~~l~s~~~dg~i~iWdp 513 (513)
+. -.+...+.|..+++||.
T Consensus 304 ~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 340 (391)
T 1l0q_A 304 YPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDF 340 (391)
T ss_dssp CCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEEC
T ss_pred ccccccccccccccccccceEEEEeCCCCceEEEEEC
Confidence 11 24666667888999974
No 117
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3e-31 Score=252.68 Aligned_cols=253 Identities=13% Similarity=0.113 Sum_probs=193.6
Q ss_pred cccCceeEEEECCCCCEEEEE-----------ecCCeEEEEEeccccccccc-cccccccccccCCccEEEEEEcCCCCE
Q 010324 211 GTKSHAECARFSPDGQFLVSC-----------SFDGFIEVVWDYLSGKLKKD-LQYQADETFMMHDETVLCIEFSRDSEM 278 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g-----------~~dg~i~~iwd~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~ 278 (513)
+|...|.|++++ ++.+++| +.|+.++ +|++........ ...........+...+.+++|+|||++
T Consensus 71 ~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~ 147 (365)
T 4h5i_A 71 DNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLR-KFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV 147 (365)
T ss_dssp TTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEE-EEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred CCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEE-EEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence 677788888765 4566665 4577888 998765432211 111111122345667999999999999
Q ss_pred EEEEe--CCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeE--ecccccceeE
Q 010324 279 LASGS--QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE--FRGHSSYVND 354 (513)
Q Consensus 279 l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~ 354 (513)
+++++ .|++|++||+.+++.+..+. |...|.+++|+|||+++++++. +.+.+|+..+++.+.. ...|...|.+
T Consensus 148 la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 224 (365)
T 4h5i_A 148 AAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSK 224 (365)
T ss_dssp EEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEE
T ss_pred EEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEE
Confidence 87654 68999999999999888874 7788999999999999999985 5566777777766543 4567889999
Q ss_pred EEEccCCCEEEEEeCCC----cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-C
Q 010324 355 AIFTNDGSRVVTASSDC----TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-G 429 (513)
Q Consensus 355 ~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~ 429 (513)
++|+|+++++++++.|+ .++.||+......... .....++...|++++|+|++ .++++++.|+.|++||+. +
T Consensus 225 v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~ 301 (365)
T 4h5i_A 225 INFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR--SKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDL 301 (365)
T ss_dssp EEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE--EEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTT
T ss_pred EEEcCCCCEEEEEecCCcceeEEeecccccceeccee--eeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCC
Confidence 99999999999999887 6888998765432110 01112567789999999988 899999999999999998 5
Q ss_pred eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc
Q 010324 430 QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 474 (513)
+.+..+.. .|...|++++|+|||++|++|+.|++|+|||+...
T Consensus 302 ~~~~~~~~--gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 302 SMSKIFKQ--AHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEETT--SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cEEEEecC--cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 55655543 35678999999999999999999999999999643
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=1.3e-29 Score=237.06 Aligned_cols=263 Identities=18% Similarity=0.259 Sum_probs=214.6
Q ss_pred ccccccccCcccceeeeec-cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEE
Q 010324 192 MKQDVEDMYPTTLSHTIKF-GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCI 270 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l 270 (513)
....+|+....++.+.+.. +|...|++++|+|+|++||+|+.||+|+ +||+.+++.... +.+|...+.++
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~-iw~~~~~~~~~~--------~~~h~~~~~~~ 115 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ-LWDVQQQKRLRN--------MTSHSARVGSL 115 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEE-EEETTTTEEEEE--------EECCSSCEEEE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEE-EeecCCceeEEE--------ecCccceEEEe
Confidence 3456788888887777764 6788899999999999999999999997 999998876543 34588888876
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce----eeEec
Q 010324 271 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL----LKEFR 346 (513)
Q Consensus 271 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~ 346 (513)
.+ ++..+++++.++.+++|+...+........+|...+..+.++++++++++++.||.|++||+++++. .....
T Consensus 116 ~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 193 (318)
T 4ggc_A 116 SW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 193 (318)
T ss_dssp EE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC
T ss_pred ec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeec
Confidence 65 4679999999999999998877554444348999999999999999999999999999999988753 34455
Q ss_pred ccccceeEEEEccCCCEE---EEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE-EcCCCcE
Q 010324 347 GHSSYVNDAIFTNDGSRV---VTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV-CNKTSSI 422 (513)
Q Consensus 347 ~~~~~v~~~~~~~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~~~~i 422 (513)
.+.+.|.++.++|++..+ ++++.++.|++||.+......... +...+..+.+.|.+..++++ ++.|+.|
T Consensus 194 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~sg~~d~~i 266 (318)
T 4ggc_A 194 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-------AHSQVCSILWSPHYKELISGHGFAQNQL 266 (318)
T ss_dssp CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-------CSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-------ceeeeeeeeecccccceEEEEEcCCCEE
Confidence 677889999999976643 356678999999999887766654 45578899999988544443 3478999
Q ss_pred EEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce
Q 010324 423 YIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK 475 (513)
Q Consensus 423 ~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 475 (513)
++||+. +..+..+.. |...|++++|+|+|++|++|+.||+|++||+.+..
T Consensus 267 ~iwd~~~~~~~~~l~g---H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 267 VIWKYPTMAKVAELKG---HTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEETTTCCEEEEECC---CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEECCCCcEEEEEcC---CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999998 556666543 56789999999999999999999999999987643
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=4.9e-30 Score=232.32 Aligned_cols=280 Identities=13% Similarity=0.109 Sum_probs=185.9
Q ss_pred eeEEEECCCCC---EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC-C---CcE
Q 010324 216 AECARFSPDGQ---FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-D---GKI 288 (513)
Q Consensus 216 v~~~~~s~~g~---~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d---g~i 288 (513)
+.++.|-.-|- .+++++ ...|+ +|+..++.. .+..+++.+|..+|..+.+.||..-|+...- + +.|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~-lw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v 114 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVS-LWKALDAWQ-----WEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREI 114 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEE-EEEESSSSB-----EEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEE
T ss_pred EeeeeeccCCCCccEEEEec-cceEE-EcccCCCcc-----ceeeEEEeccCceeEEEEEcCcccceeeeeeccccccce
Confidence 55566655443 566666 55786 999988721 2233455668888888888885432222111 0 011
Q ss_pred EEEEcCC-----cceeeecccccccCeEEEEEccCCCEEEEee--CCCcEEEEec-CCCceeeEecccccceeEEEEcc-
Q 010324 289 KVWRIRS-----GQCLRRLERAHSEGVTSLVFSRDGSQILSTS--FDSTARIHGL-KSGKLLKEFRGHSSYVNDAIFTN- 359 (513)
Q Consensus 289 ~vwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~-~~~~~~~~~~~~~~~v~~~~~~~- 359 (513)
+..-+.. ++.+.. .++...|..+ ++++.+.+++ .|+.|++|++ .+|+.+..+..|...++.++|+|
T Consensus 115 ~sla~spd~~~~~~~l~s--~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 115 RALFCSSDDESEKQVLLK--SGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp EEECC------CCEEEEE--EEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred EEEEECCCccccccEEEe--CCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 1111111 111111 1233334443 4665555533 5899999999 45888888889999999999999
Q ss_pred --CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeE------------EEEcCCCcEEEE
Q 010324 360 --DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI------------VVCNKTSSIYIM 425 (513)
Q Consensus 360 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l------------~~~~~~~~i~i~ 425 (513)
++..|++++.|++|++||+++++++.++.... .+...+.+++|+|++ ..+ ++++.|+++++|
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~---~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD---SYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC------CCCEEEEEEETT-EEEEEEC------------CCEEEEEE
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC---cceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEE
Confidence 77999999999999999999999999986322 123467778899876 443 667889999999
Q ss_pred Ecc-CeEEEEeec--CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeE-EEEEcCCCCEEEE
Q 010324 426 TLQ-GQVVKSFSS--GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI-GVTHHPHRNLLAT 501 (513)
Q Consensus 426 d~~-~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s 501 (513)
|.. +..+..+.. ...+...+.+..+ ++.++++|+.||+|++||+.+++++.++.+|...+. .++|+|+|++|++
T Consensus 266 d~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 266 NPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp ETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE
T ss_pred ECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE
Confidence 998 444433321 1222333443333 378999999999999999999999999999987655 6899999999999
Q ss_pred EECCCeEEeccC
Q 010324 502 YGEDCTMKLWKP 513 (513)
Q Consensus 502 ~~~dg~i~iWdp 513 (513)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999984
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.9e-30 Score=251.07 Aligned_cols=243 Identities=16% Similarity=0.182 Sum_probs=200.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc---eeeeccc------------------------------------
Q 010324 264 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ---CLRRLER------------------------------------ 304 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~------------------------------------ 304 (513)
..++.+++|+|+|++|+++ .++.|++||+.+|+ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4578999999999966665 57899999999998 5444331
Q ss_pred -----------------ccccCeEEEEEccCCCEE-EEeeCCCcEEEEecC--CCceeeEec--ccccceeEEEEccCCC
Q 010324 305 -----------------AHSEGVTSLVFSRDGSQI-LSTSFDSTARIHGLK--SGKLLKEFR--GHSSYVNDAIFTNDGS 362 (513)
Q Consensus 305 -----------------~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~--~~~~~v~~~~~~~~~~ 362 (513)
.|...|.+++|+|++++| ++|+.||.|++||+. +++.+..+. .+...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 123369999999999996 889999999999999 888888776 4668899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC--CCCeEEEEcCCCcEEEEEcc-CeEEEEeecCc
Q 010324 363 RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK--NPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGK 439 (513)
Q Consensus 363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~ 439 (513)
+|++++.+|.|++|++.++..... ......+|...|.+++|+|+ +..++++++.|+.|++||+. +..+..+..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-- 238 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKF--TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF-- 238 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSC--CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC--
T ss_pred EEEEEeCCCcEEEEecCCcccccc--cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec--
Confidence 999999999999999988764430 11123367889999999998 23799999999999999998 444444332
Q ss_pred cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc-------------------------cCCeEEEEEcC
Q 010324 440 REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH-------------------------EKDVIGVTHHP 494 (513)
Q Consensus 440 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-------------------------~~~v~~~~~~p 494 (513)
.+...+.+++|+ ++++|++|+.|+.|++||+.+++.+..+..+ ...|.+++|+|
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 246789999999 9999999999999999999999988877633 35689999999
Q ss_pred CCCEEEEEE-CCCeEEecc
Q 010324 495 HRNLLATYG-EDCTMKLWK 512 (513)
Q Consensus 495 ~~~~l~s~~-~dg~i~iWd 512 (513)
++++|++++ .|+.|++|+
T Consensus 318 ~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp SSSEEEEEETTCSEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEE
Confidence 999999999 899999997
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=6.4e-30 Score=242.78 Aligned_cols=234 Identities=12% Similarity=0.123 Sum_probs=185.0
Q ss_pred cccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEE-EEeeCCCcEEEEecCC
Q 010324 260 FMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI-LSTSFDSTARIHGLKS 338 (513)
Q Consensus 260 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~ 338 (513)
..+|...|.+++|+|||++|++|+.++ +++||+.+++...... ...+..+++.++++.+ ++++.|+.|++||..+
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE---MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE---CSCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee---cCCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 345999999999999999999998765 7899998877665443 2357888999988887 5678889999999999
Q ss_pred CceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE--
Q 010324 339 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV-- 415 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-- 415 (513)
++.+..+. +...|.++.++++. ++++ .|+.|++||+.++ +.+..+.. +...+++++ ..+++
T Consensus 91 ~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---------~~~~~~~s~---~~la~~s 154 (355)
T 3vu4_A 91 KQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---------FGGVCEFSN---GLLVYSN 154 (355)
T ss_dssp TEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---------EEEEEEEET---TEEEEEE
T ss_pred CcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---------CCceEEEEc---cEEEEeC
Confidence 99988887 56689999999863 4444 4789999999987 55444431 333445555 45555
Q ss_pred EcCCCcEEEEEccCeE-E------------EE-eecCccCCCcEEEEEECCCCCEEEEEecCce-EEEEECCCceeeEee
Q 010324 416 CNKTSSIYIMTLQGQV-V------------KS-FSSGKREGGDFVAACVSPKGEWIYCVGEDRN-LYCFSHQSGKLEHLM 480 (513)
Q Consensus 416 ~~~~~~i~i~d~~~~~-~------------~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~ 480 (513)
++.+|.|++||+.... . .. ......|...+.+++|+|+|++|++|+.||+ |++||+.+++.+..+
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 6889999999998532 0 00 1222346778999999999999999999998 999999999999999
Q ss_pred e-c-ccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 481 K-V-HEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 481 ~-~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
. + |.+.|++++|+|++++|++++.||+|++||.
T Consensus 235 ~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 235 RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp ECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred EcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 8 5 9999999999999999999999999999984
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=8.4e-31 Score=252.49 Aligned_cols=252 Identities=13% Similarity=0.094 Sum_probs=175.6
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcC--------CCCEEEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--------DSEMLASG 282 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------~~~~l~s~ 282 (513)
+|...+....+++++.+||+|+.|++|+ +||..++..... .....+.||.+.|++++|+| |+++||+|
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~-lw~~~~~~~~~~---~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVR-LIITKNETIITQ---HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEE-EEEEETTEEEEE---EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEE-EEECCCCcccee---eeecccCCCCCceEEEEEccccccccCCCCCEEEEE
Confidence 4445555566667788999999999998 999988765432 22346778999999999998 78999999
Q ss_pred eCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCC-EEEEeeCCCcEEEEecCCCceeeEe----------------
Q 010324 283 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS-QILSTSFDSTARIHGLKSGKLLKEF---------------- 345 (513)
Q Consensus 283 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~---------------- 345 (513)
+.|++|+|||+.++..+..+. .|..++.+++|+|++. +|++|+.||+|++||+++++.....
T Consensus 163 s~D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 163 GDDCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp ETTSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred ECCCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 999999999999888777775 7889999999999874 7999999999999999877543221
Q ss_pred ---------cccccceeEEEEc-cCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCC------------CCCceeeEE
Q 010324 346 ---------RGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLR------------GGDASVNSV 403 (513)
Q Consensus 346 ---------~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------~~~~~v~~~ 403 (513)
.+|...+.++.|+ |+++.+++++.|+++++||+.++.....+....... .........
T Consensus 242 ~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (393)
T 4gq1_A 242 LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGA 321 (393)
T ss_dssp GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCC
T ss_pred ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeE
Confidence 3466778899986 799999999999999999998876554433211000 001112223
Q ss_pred EecCC-CCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEEC
Q 010324 404 HLFPK-NPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 404 ~~~~~-~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 471 (513)
.++|. +..++++++.|+.|++||.. +........ +...|.+++|+|+|++||+++.+| +.+|.+
T Consensus 322 ~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~---~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 322 CPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ---LGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE---CSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC---CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 34443 33456778889999999998 444443333 356799999999999999998766 445543
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=239.77 Aligned_cols=268 Identities=12% Similarity=0.063 Sum_probs=204.2
Q ss_pred eccCcccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEecccccccccccccc-c-ccccc
Q 010324 185 LFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQA-D-ETFMM 262 (513)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~-~-~~~~~ 262 (513)
++.+.......+|+.........+. ...|.++.|+|+ +++|+.|++++ +|+.............. . ....+
T Consensus 51 l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~-~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 51 CMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA---IISRGPCNRLL-LLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS---EEEECSTTEEE-EEETTTEEEEEETTTCCEEEEEECC
T ss_pred EEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc---eEEecCCCeEE-EEEccCceEEeecCCcceeEEeecC
Confidence 4445555566677777777766665 467888999998 99999999997 99876432211111100 1 11224
Q ss_pred CCccEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc
Q 010324 263 HDETVLCIEFSR--DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK 340 (513)
Q Consensus 263 h~~~v~~l~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 340 (513)
|...|.+++|+| +++++++|+.||.|++||+.+++........+...+.+++|+|++.+|++|+.||.|++||+++++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence 678999999999 999999999999999999999998766654566789999999999999999999999999999998
Q ss_pred ee-eEecc-cccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCcee--eEEEecCCCCCeEEEE
Q 010324 341 LL-KEFRG-HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASV--NSVHLFPKNPDHIVVC 416 (513)
Q Consensus 341 ~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~ 416 (513)
.+ ..+.. |..+|++++|+|++.+|++++ |+.|++||+++++....+.... .+...+ .+++|+|++ .+++++
T Consensus 204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g-~~l~~~ 278 (343)
T 3lrv_A 204 QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT---IPEFKTGTVTYDIDDSG-KNMIAY 278 (343)
T ss_dssp SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB---C-----CCEEEEECTTS-SEEEEE
T ss_pred CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc---cccccccceEEEECCCC-CEEEEe
Confidence 87 78887 999999999999999999999 5599999999987665544311 122233 469999987 788887
Q ss_pred cC-CCcEEEEEccCe--EEEEeecCccCCCcEEEEEECC---CCCEEEEEecCceEEEEECC
Q 010324 417 NK-TSSIYIMTLQGQ--VVKSFSSGKREGGDFVAACVSP---KGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 417 ~~-~~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~g~~dg~i~iwd~~ 472 (513)
+. ++.+++|++... .... .++..++|++ ++..+++++.||.+.++-..
T Consensus 279 s~~d~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 279 SNESNSLTIYKFDKKTKNWTK--------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ETTTTEEEEEEECTTTCSEEE--------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred cCCCCcEEEEEEcccccceEe--------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 77 999999998622 1111 3466788888 88999999999999887643
No 124
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.1e-29 Score=237.44 Aligned_cols=281 Identities=14% Similarity=0.175 Sum_probs=195.3
Q ss_pred cccccccccccCcc----cceeeeeccccCceeEEEECC--CCCEEEEEecCCeEEEEEecccccccccc-ccccccccc
Q 010324 189 TAAMKQDVEDMYPT----TLSHTIKFGTKSHAECARFSP--DGQFLVSCSFDGFIEVVWDYLSGKLKKDL-QYQADETFM 261 (513)
Q Consensus 189 ~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~~~~s~--~g~~la~g~~dg~i~~iwd~~~~~~~~~~-~~~~~~~~~ 261 (513)
.......+|+.... .....+. +|...|++++|+| ++++|++|+.||.|+ +||+.++...... .......+.
T Consensus 30 ~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~-vwd~~~~~~~~~~~~~~~~~~~~ 107 (351)
T 3f3f_A 30 SSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVK-LWEEDPDQEECSGRRWNKLCTLN 107 (351)
T ss_dssp ETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEE-EEEECTTSCTTSSCSEEEEEEEC
T ss_pred eCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEE-EEecCCCcccccccCcceeeeec
Confidence 33444556665543 2444444 8999999999999 699999999999997 9999876532111 112334566
Q ss_pred cCCccEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCcceeeecc------------cccccCeEEEEEccC---CCEEEE
Q 010324 262 MHDETVLCIEFSRD--SEMLASGSQDGKIKVWRIRSGQCLRRLE------------RAHSEGVTSLVFSRD---GSQILS 324 (513)
Q Consensus 262 ~h~~~v~~l~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------~~~~~~v~~~~~~~~---~~~l~~ 324 (513)
+|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+. ..+...+.+++|+|+ +..+++
T Consensus 108 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 187 (351)
T 3f3f_A 108 DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAV 187 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEE
T ss_pred ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEE
Confidence 79999999999999 9999999999999999999887654433 157788999999997 999999
Q ss_pred eeCCCcEEEEecCCCce--eeEecccccceeEEEEccCC----CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCc
Q 010324 325 TSFDSTARIHGLKSGKL--LKEFRGHSSYVNDAIFTNDG----SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA 398 (513)
Q Consensus 325 ~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 398 (513)
++.|+.+.+|+...++. +..+.+|...|++++|+|++ ++|++++.||.|++||++++......... ..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~ 261 (351)
T 3f3f_A 188 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEES------LT 261 (351)
T ss_dssp EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------
T ss_pred ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCc------cc
Confidence 99999998888877765 67788899999999999998 89999999999999999876543322211 11
Q ss_pred eeeEEEecCCCCCeEEEE----cCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc
Q 010324 399 SVNSVHLFPKNPDHIVVC----NKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 399 ~v~~~~~~~~~~~~l~~~----~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 474 (513)
........+.. .....+ .....+.+|+... .........+...+.+++|+|++++|++|+.||.|++|++.++
T Consensus 262 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 262 NSNMFDNSADV-DMDAQGRSDSNTEEKAELQSNLQ--VELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp ------------------------------CCSEE--EEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ceeccCCCccc-ccccccccccccceeeeeccccc--ccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 11111111111 112222 2223334443332 2222222345678999999999999999999999999999987
Q ss_pred eeeEee
Q 010324 475 KLEHLM 480 (513)
Q Consensus 475 ~~~~~~ 480 (513)
+....+
T Consensus 339 ~~~~~~ 344 (351)
T 3f3f_A 339 NEFKCM 344 (351)
T ss_dssp SCEEEE
T ss_pred cchhhe
Confidence 655443
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=7.4e-28 Score=235.52 Aligned_cols=237 Identities=10% Similarity=0.059 Sum_probs=197.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecc----cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC
Q 010324 264 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE----RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG 339 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 339 (513)
...+.+++|+|++.++++++.++.|++||+.+++....+. ..|...|.+++|+|++..+++++.|+.|++||++++
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence 3456699999977788888889999999999998876322 267789999999999999999999999999999999
Q ss_pred ceeeEecccccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc-
Q 010324 340 KLLKEFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN- 417 (513)
Q Consensus 340 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~- 417 (513)
+.+..+..|...+.+++|+|+++.+++++ .|+.|++||+++++....+.. ...+.+++++|++ ..+++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~g-~~l~~~~~ 273 (433)
T 3bws_A 202 AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-------IGLPRGLLLSKDG-KELYIAQF 273 (433)
T ss_dssp CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-------CSEEEEEEECTTS-SEEEEEEE
T ss_pred eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-------CCCceEEEEcCCC-CEEEEEEC
Confidence 99999988899999999999999886555 799999999999887776642 3468999999988 5666666
Q ss_pred -------CCCcEEEEEccC-eEEEEeecCccCCCcEEEEEECCCCCEE-EEEecCceEEEEECCCceeeEeeecccCCeE
Q 010324 418 -------KTSSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSPKGEWI-YCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI 488 (513)
Q Consensus 418 -------~~~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 488 (513)
.++.|++||+.. +...... +...+..++|+|+++.+ ++++.++.|++||+.+++.+..+. +...+.
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~ 348 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKEKLIDTIG----PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPN 348 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTTEEEEEEE----EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEE
T ss_pred CCCccccCCCeEEEEECCCCcEEeecc----CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCC
Confidence 588999999984 4433332 22357889999999765 555799999999999999888776 677899
Q ss_pred EEEEcCCCCEEEEEEC---------------CCeEEeccC
Q 010324 489 GVTHHPHRNLLATYGE---------------DCTMKLWKP 513 (513)
Q Consensus 489 ~~~~~p~~~~l~s~~~---------------dg~i~iWdp 513 (513)
+++|+|+++++++++. ||.|++||+
T Consensus 349 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~ 388 (433)
T 3bws_A 349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT 388 (433)
T ss_dssp EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred eEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence 9999999998888876 579999985
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=9.6e-27 Score=232.22 Aligned_cols=305 Identities=13% Similarity=0.138 Sum_probs=233.8
Q ss_pred ccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEec--cccccccccccccccccccCCccE
Q 010324 190 AAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDY--LSGKLKKDLQYQADETFMMHDETV 267 (513)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~--~~~~~~~~~~~~~~~~~~~h~~~v 267 (513)
......+++....++..++..++. +.+++|+|||++|++++.|+.|+ +||+ .+++....+. +...+
T Consensus 157 ~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~-v~D~~~~t~~~~~~i~---------~g~~p 224 (543)
T 1nir_A 157 DAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARID-MIDLWAKEPTKVAEIK---------IGIEA 224 (543)
T ss_dssp GGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEE-EEETTSSSCEEEEEEE---------CCSEE
T ss_pred CCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEE-EEECcCCCCcEEEEEe---------cCCCc
Confidence 334556677777788888876665 88999999999999999999996 9999 6666554333 45568
Q ss_pred EEEEEcC----CCCEEEEEeC-CCcEEEEEcCCcceeeecccc---------c-ccCeEEEEEccCCCEE-EEeeCCCcE
Q 010324 268 LCIEFSR----DSEMLASGSQ-DGKIKVWRIRSGQCLRRLERA---------H-SEGVTSLVFSRDGSQI-LSTSFDSTA 331 (513)
Q Consensus 268 ~~l~~~~----~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~---------~-~~~v~~~~~~~~~~~l-~~~~~dg~i 331 (513)
..++|+| +|+++++++. +++|.+||..+++++..+... | ...+.++.++|++..+ ++...++.|
T Consensus 225 ~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i 304 (543)
T 1nir_A 225 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV 304 (543)
T ss_dssp EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeE
Confidence 9999999 9999999885 899999999999988877521 2 2378999999977654 566678999
Q ss_pred EEEecCCCceee--EecccccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC
Q 010324 332 RIHGLKSGKLLK--EFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK 408 (513)
Q Consensus 332 ~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (513)
.+||..+.+.+. .+. +...+.++.|+|+|+++++++ .+++|.+||..+++....+.... ..|.+....+ ++|+
T Consensus 305 ~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~--~ph~g~g~~~-~~p~ 380 (543)
T 1nir_A 305 LLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK--TPHPGRGANF-VHPK 380 (543)
T ss_dssp EEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SBCCTTCEEE-EETT
T ss_pred EEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC--CCCCCCCccc-CCCC
Confidence 999998776543 333 556788999999999877655 58899999999999888776321 1232222232 4676
Q ss_pred CCCeEEEEc-CCCcEEEEEccC--------eEEEEeecCccCCCcEEEEEECCCCCEEEEEe-------cCceEEEEECC
Q 010324 409 NPDHIVVCN-KTSSIYIMTLQG--------QVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-------EDRNLYCFSHQ 472 (513)
Q Consensus 409 ~~~~l~~~~-~~~~i~i~d~~~--------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-------~dg~i~iwd~~ 472 (513)
++..++++. .+++|.+||... +.+..+.. ++..+..++++|+|++|++++ .+++|.+||+.
T Consensus 381 ~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~---~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 381 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG---QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC---SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc---CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECC
Confidence 556677765 689999999964 45555554 334566789999999999987 37799999999
Q ss_pred Cceee-Eee--------ecccCCeEEEEEcCCCCEEEEEE-----CCCeEEeccC
Q 010324 473 SGKLE-HLM--------KVHEKDVIGVTHHPHRNLLATYG-----EDCTMKLWKP 513 (513)
Q Consensus 473 ~~~~~-~~~--------~~h~~~v~~~~~~p~~~~l~s~~-----~dg~i~iWdp 513 (513)
+++.. ..+ ..+...+..+.|+|+|+.++.+. .|+.|.|||.
T Consensus 458 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 458 NLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred CCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 98876 443 34567899999999999888663 4799999985
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1.8e-27 Score=230.55 Aligned_cols=278 Identities=16% Similarity=0.215 Sum_probs=210.4
Q ss_pred cCceeEEEECCCCC-EEEEEe----cCC----eEEEEEec--cccccccccccccccccccCCccEEEEEEcC-------
Q 010324 213 KSHAECARFSPDGQ-FLVSCS----FDG----FIEVVWDY--LSGKLKKDLQYQADETFMMHDETVLCIEFSR------- 274 (513)
Q Consensus 213 ~~~v~~~~~s~~g~-~la~g~----~dg----~i~~iwd~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------- 274 (513)
...+...+|++.|. ++++|+ .|| .++ +||+ .+++.+.. ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~-lwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~d~~~~~ 134 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQ-LVDTGGAPGTVLAQ------NSYKVNKQWLRYAGHTASDEVFEK 134 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEE-EEECSSSTTCEEEE------EEEEECGGGHHHHHHHHHHHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEE-EEeCCCCCCCEEee------eEEEcChhHHHHHHHHHHHHHHHH
Confidence 34677788888775 666776 467 897 9999 88765422 13345777777666664
Q ss_pred -------CCCEEEEEeCC------CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCC---cEEEEecCC
Q 010324 275 -------DSEMLASGSQD------GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS---TARIHGLKS 338 (513)
Q Consensus 275 -------~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~ 338 (513)
.+..++.++.+ +.|++||+.. .....+. .|...+.+++|+|||+.|++++.++ .|++||+.+
T Consensus 135 ~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~-~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t 212 (415)
T 2hqs_A 135 LTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN 212 (415)
T ss_dssp HHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred HcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEe-CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC
Confidence 25667766654 7999999874 4455565 6888999999999999999999885 999999998
Q ss_pred CceeeEecccccceeEEEEccCCCEEE-EEeCCCc--EEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE
Q 010324 339 GKLLKEFRGHSSYVNDAIFTNDGSRVV-TASSDCT--VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV 415 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 415 (513)
++.. .+..+...+.+++|+|||+.|+ +++.++. |++||+.+++.. .+. .+...+.++.|+|++ ..+++
T Consensus 213 g~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~------~~~~~~~~~~~spdg-~~l~~ 283 (415)
T 2hqs_A 213 GAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT------DGRSNNTEPTWFPDS-QNLAF 283 (415)
T ss_dssp CCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC------CCSSCEEEEEECTTS-SEEEE
T ss_pred CcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc------CCCCcccceEECCCC-CEEEE
Confidence 8765 4666778899999999999888 5665554 999999987753 322 455678999999998 55555
Q ss_pred EcC-CC--cEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC---ceEEEEECCCceeeEeeecccCCeEE
Q 010324 416 CNK-TS--SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED---RNLYCFSHQSGKLEHLMKVHEKDVIG 489 (513)
Q Consensus 416 ~~~-~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~ 489 (513)
++. ++ .|++||+.+.....+.. +...+..++|+|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+
T Consensus 284 ~s~~~g~~~i~~~d~~~~~~~~l~~---~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~ 358 (415)
T 2hqs_A 284 TSDQAGRPQVYKVNINGGAPQRITW---EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDET 358 (415)
T ss_dssp EECTTSSCEEEEEETTSSCCEECCC---SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEE
T ss_pred EECCCCCcEEEEEECCCCCEEEEec---CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCC
Confidence 544 55 67788887654444332 34567899999999999988864 68999999998774 444454 8999
Q ss_pred EEEcCCCCEEEEEECCC---eEEeccC
Q 010324 490 VTHHPHRNLLATYGEDC---TMKLWKP 513 (513)
Q Consensus 490 ~~~~p~~~~l~s~~~dg---~i~iWdp 513 (513)
++|+|+|++|++++.|+ .|.+||.
T Consensus 359 ~~~spdg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 359 PSLAPNGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp EEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred eEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence 99999999999888777 7888874
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=9.6e-27 Score=225.38 Aligned_cols=277 Identities=14% Similarity=0.123 Sum_probs=212.9
Q ss_pred ccccccc--Ccccce--eeeeccccCceeEEEECC--------------CCCEEEEEecC------CeEEEEEecccccc
Q 010324 193 KQDVEDM--YPTTLS--HTIKFGTKSHAECARFSP--------------DGQFLVSCSFD------GFIEVVWDYLSGKL 248 (513)
Q Consensus 193 ~~~~~~~--~~~~~~--~~~~~~h~~~v~~~~~s~--------------~g~~la~g~~d------g~i~~iwd~~~~~~ 248 (513)
...+|+. ...+.. ..+. +|...+.++++++ .+..++.++.+ +.|+ +||+..+..
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~-i~d~~g~~~ 171 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELR-VSDYDGYNQ 171 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEE-EEETTSCSC
T ss_pred EEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEE-EEcCCCCCC
Confidence 4556777 555554 2344 7888888877765 26677776654 7896 999875332
Q ss_pred ccccccccccccccCCccEEEEEEcCCCCEEEEEeCCC---cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEE-E
Q 010324 249 KKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG---KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL-S 324 (513)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~ 324 (513)
..+.+|...|.+++|+|+|++|++++.++ .|++||+.+++... +. .+...+.+++|+|||+.|+ +
T Consensus 172 ---------~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~-~~~~~~~~~~~spdg~~la~~ 240 (415)
T 2hqs_A 172 ---------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VA-SFPRHNGAPAFSPDGSKLAFA 240 (415)
T ss_dssp ---------EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EE-CCSSCEEEEEECTTSSEEEEE
T ss_pred ---------EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-ee-cCCCcccCEEEcCCCCEEEEE
Confidence 23445889999999999999999999875 99999999988754 43 5778899999999999888 6
Q ss_pred eeCCCc--EEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeEeecCCCCCCCCCce
Q 010324 325 TSFDST--ARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DC--TVKVWDLKSTDCLQTFKPPPPLRGGDAS 399 (513)
Q Consensus 325 ~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
++.++. |++||+.+++. ..+..|...+.+++|+|||++|++++. ++ .|.+||+.+++... +. .+...
T Consensus 241 ~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~------~~~~~ 312 (415)
T 2hqs_A 241 LSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-IT------WEGSQ 312 (415)
T ss_dssp ECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CC------CSSSE
T ss_pred EecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-Ee------cCCCc
Confidence 666654 99999988775 566778888999999999999998886 44 67888988876432 22 24457
Q ss_pred eeEEEecCCCCCeEEEEcCC---CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc---eEEEEECCC
Q 010324 400 VNSVHLFPKNPDHIVVCNKT---SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR---NLYCFSHQS 473 (513)
Q Consensus 400 v~~~~~~~~~~~~l~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~ 473 (513)
+.+++|+|++ ..+++++.+ ..|++||+.+.....+... ..+..++|+|+|++|++++.++ .|++||+.
T Consensus 313 ~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~----~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~- 386 (415)
T 2hqs_A 313 NQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQVLSST----FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD- 386 (415)
T ss_dssp EEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCEEECCCS----SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-
T ss_pred ccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCEEEecCC----CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-
Confidence 8899999998 556555543 5899999986555544432 2688999999999999998776 89999987
Q ss_pred ceeeEeeecccCCeEEEEEcCCC
Q 010324 474 GKLEHLMKVHEKDVIGVTHHPHR 496 (513)
Q Consensus 474 ~~~~~~~~~h~~~v~~~~~~p~~ 496 (513)
+.....+..|.+.|.+++|+|..
T Consensus 387 g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 387 GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp SCCEEECCCSSSEEEEEEECCCC
T ss_pred CCcEEEeeCCCCCCcCCcccccc
Confidence 55567788899999999999964
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=4e-27 Score=213.29 Aligned_cols=260 Identities=15% Similarity=0.077 Sum_probs=173.6
Q ss_pred cccccCcc---cceeeeeccccCceeEEEECCCCC-EEEEEecCCeEEEEEecccccc----ccccccccccccccCCcc
Q 010324 195 DVEDMYPT---TLSHTIKFGTKSHAECARFSPDGQ-FLVSCSFDGFIEVVWDYLSGKL----KKDLQYQADETFMMHDET 266 (513)
Q Consensus 195 ~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~~g~-~la~g~~dg~i~~iwd~~~~~~----~~~~~~~~~~~~~~h~~~ 266 (513)
..|+.... +..++.. .|..+|..+.|.||-. ++.++-.+=.++.++.+.-..- .... .-.+|...
T Consensus 66 ~lw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l------~s~g~~~~ 138 (356)
T 2w18_A 66 SLWKALDAWQWEKLYTWH-FAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL------LKSGNIKA 138 (356)
T ss_dssp EEEEESSSSBEEEEEEEE-CCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEE------EEEEEEEE
T ss_pred EEcccCCCccceeeEEEe-ccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEE------EeCCCeEE
Confidence 34544444 5667776 7777888888888543 2222222222211222211000 0000 00123334
Q ss_pred EEEEEEcCCCCEEEEEe--CCCcEEEEEc-CCcceeeecccccccCeEEEEEcc---CCCEEEEeeCCCcEEEEecCCCc
Q 010324 267 VLCIEFSRDSEMLASGS--QDGKIKVWRI-RSGQCLRRLERAHSEGVTSLVFSR---DGSQILSTSFDSTARIHGLKSGK 340 (513)
Q Consensus 267 v~~l~~~~~~~~l~s~~--~dg~i~vwd~-~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~ 340 (513)
|.++ ++++.+.+++ .|+.|++|++ .+|+.+..+. .|...++.++|+| ++..|++|+.|++|++||+++|+
T Consensus 139 v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk 214 (356)
T 2w18_A 139 VLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF-LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ 214 (356)
T ss_dssp EEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE-ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC
T ss_pred EEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeec-cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc
Confidence 4443 4555555543 5999999999 4577777765 7899999999999 77999999999999999999999
Q ss_pred eeeEecccc---cceeEEEEccCCCEE------------EEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEe
Q 010324 341 LLKEFRGHS---SYVNDAIFTNDGSRV------------VTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHL 405 (513)
Q Consensus 341 ~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
.+.++.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++.+..+.... ..+|...+.+..+
T Consensus 215 ~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~-p~Gh~~~~lsg~~ 293 (356)
T 2w18_A 215 LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL-PPGQAGRFLEGDV 293 (356)
T ss_dssp EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC-CTTCCCCEEEEEE
T ss_pred EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec-cCCCcceeEcccc
Confidence 999998654 357778999999876 567889999999999998776542111 1134333444444
Q ss_pred cCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEEC
Q 010324 406 FPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 406 ~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 471 (513)
+ ...+++++.|++|++||+. ++.+..+..+. ...+..++|+|||++|++|+.|++|++||+
T Consensus 294 s---g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~--~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 K---DHCAAAILTSGTIAIWDLLLGQCTALLPPVS--DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp E---TTEEEEEETTSCEEEEETTTCSEEEEECCC----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred C---CCEEEEEcCCCcEEEEECCCCcEEEEecCCC--CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 3 3689999999999999998 56666665322 122346899999999999999999999995
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=3.7e-26 Score=227.98 Aligned_cols=274 Identities=13% Similarity=0.102 Sum_probs=217.6
Q ss_pred EECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEc--CCcc
Q 010324 220 RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI--RSGQ 297 (513)
Q Consensus 220 ~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~--~~~~ 297 (513)
+|+|++..+++++.|++|. +||..+++....+.. ++. +.+++|+|+|++|++++.|+.|.+||+ .+++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~-v~D~~t~~~~~~i~~-------g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIA-LVDGDSKKIVKVIDT-------GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEE-EEETTTCCEEEEEEC-------STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred ccCCCCEEEEEEcCCCeEE-EEECCCceEEEEEec-------Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCc
Confidence 4889999999999999996 999999887655432 232 889999999999999999999999999 8888
Q ss_pred eeeecccccccCeEEEEEcc----CCCEEEEeeC-CCcEEEEecCCCceeeEeccc-----------ccceeEEEEccCC
Q 010324 298 CLRRLERAHSEGVTSLVFSR----DGSQILSTSF-DSTARIHGLKSGKLLKEFRGH-----------SSYVNDAIFTNDG 361 (513)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~ 361 (513)
.+.++. +...+..++|+| ||+++++++. +++|.+||..+++++..+..+ ...+.++.++|++
T Consensus 214 ~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~ 291 (543)
T 1nir_A 214 KVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 291 (543)
T ss_dssp EEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred EEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC
Confidence 888875 456689999999 9999999885 899999999999988887642 2268899999977
Q ss_pred CE-EEEEeCCCcEEEEeCCCCceeE--eecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeec
Q 010324 362 SR-VVTASSDCTVKVWDLKSTDCLQ--TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSS 437 (513)
Q Consensus 362 ~~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~ 437 (513)
.. +++...++.|.+||+.+.+... .+. +...+..+.|+|++..+++++..++.|.+||.. ++....+..
T Consensus 292 ~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~ 364 (543)
T 1nir_A 292 PEFIVNVKETGKVLLVNYKDIDNLTVTSIG-------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 364 (543)
T ss_dssp SEEEEEETTTTEEEEEECTTSSSCEEEEEE-------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCeEEEEEecCCCcceeEEec-------cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc
Confidence 65 5566678999999998876543 322 234577889999985556667778999999998 555555553
Q ss_pred Cc-cCCCcEEEEEECCC-CCEEEEEe-cCceEEEEECCC-------ceeeEeeecccCCeEEEEEcCCCCEEEEEE----
Q 010324 438 GK-REGGDFVAACVSPK-GEWIYCVG-EDRNLYCFSHQS-------GKLEHLMKVHEKDVIGVTHHPHRNLLATYG---- 503 (513)
Q Consensus 438 ~~-~~~~~~~~~~~s~~-~~~l~~g~-~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~---- 503 (513)
.. .|.+....+ ++|+ |..++++. .|++|.+||..+ .+.+..+.+|.+.+..++++|++++|++++
T Consensus 365 g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~ 443 (543)
T 1nir_A 365 GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP 443 (543)
T ss_dssp SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCS
T ss_pred CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCC
Confidence 32 122222232 4677 55566665 689999999998 889999999998899999999999999987
Q ss_pred ---CCCeEEeccC
Q 010324 504 ---EDCTMKLWKP 513 (513)
Q Consensus 504 ---~dg~i~iWdp 513 (513)
.+++|.+||.
T Consensus 444 ~~~~~~~v~v~d~ 456 (543)
T 1nir_A 444 DARISQSVAVFDL 456 (543)
T ss_dssp SHHHHTCEEEEET
T ss_pred CcccCceEEEEEC
Confidence 3779999984
No 131
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=4.4e-25 Score=209.52 Aligned_cols=277 Identities=12% Similarity=0.131 Sum_probs=218.1
Q ss_pred cccCceeEEEECCCCCEEEEEec-------CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE-
Q 010324 211 GTKSHAECARFSPDGQFLVSCSF-------DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG- 282 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~-------dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~- 282 (513)
.....+..++|+|+|+++++++. ++.|. +||..+++....+. ....+.+++|+|+|++++++
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~-~~d~~~~~~~~~~~---------~~~~~~~~~~s~dg~~l~v~~ 107 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVY-RLDPVTLEVTQAIH---------NDLKPFGATINNTTQTLWFGN 107 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEE-EECTTTCCEEEEEE---------ESSCCCSEEEETTTTEEEEEE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEE-EEcCCCCeEEEEEe---------cCCCcceEEECCCCCEEEEEe
Confidence 34456889999999999988874 56895 99999887765544 23457789999999966555
Q ss_pred eCCCcEEEEEcCCcceeeeccccccc--------CeEEEEEccCCCEEEEee--CCCcEEEEecCCCceeeEecccccce
Q 010324 283 SQDGKIKVWRIRSGQCLRRLERAHSE--------GVTSLVFSRDGSQILSTS--FDSTARIHGLKSGKLLKEFRGHSSYV 352 (513)
Q Consensus 283 ~~dg~i~vwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v 352 (513)
..++.|.+||..+++.+..+...... .+.+++|+|+++.+++++ .++.|.+||..+++.+..+..+...+
T Consensus 108 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 187 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMS 187 (353)
T ss_dssp TTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTC
T ss_pred cCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCcc
Confidence 45799999999999988777532221 278999999999888776 47889999999999888887566668
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeE
Q 010324 353 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQV 431 (513)
Q Consensus 353 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~ 431 (513)
.+++|+|+|+++++++.++.|.+||+.+++....+.... .++...+..++++|++..++++...++.|.+||.. +..
T Consensus 188 ~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 188 TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD--DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI 265 (353)
T ss_dssp CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC--SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC--CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 999999999999999999999999999998877766422 12345678899999985566666667999999997 555
Q ss_pred EEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECC
Q 010324 432 VKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 505 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d 505 (513)
...+.... ...++|+|+|+++++++ .++.|.+||..+++.+..+..+ ..+.+++|+|++++|+.+..+
T Consensus 266 ~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 266 LAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred EEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 55554322 24689999999776666 6899999999999988887654 468999999999977666654
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=6.4e-26 Score=237.28 Aligned_cols=282 Identities=13% Similarity=0.100 Sum_probs=209.8
Q ss_pred cCceeEEEECCCCCEEEEEec-CC-----eEEEEEeccccccccccccccccccccCC----------------------
Q 010324 213 KSHAECARFSPDGQFLVSCSF-DG-----FIEVVWDYLSGKLKKDLQYQADETFMMHD---------------------- 264 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~-dg-----~i~~iwd~~~~~~~~~~~~~~~~~~~~h~---------------------- 264 (513)
...+.+++|||||++|++++. |+ .|. +||+.+++........ ++.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~-~~d~~~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLW-SYDIGSGQTRLLVDSK------VVLPGTETLSDEEKARRERQRIAAM 108 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEE-EEETTTCCEEEEECGG------GTC--------------------CC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEE-EEECCCCceeEccchh------hcccccccccchhhhhhhhhhhccc
Confidence 446899999999999999998 88 895 9999988754433221 111
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc--eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ--CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 342 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 342 (513)
..|.+++|+|||++|++++. +.|++||+.++. ....+. .+...+.+++|+|||++|++++ ++.|++||+.+++..
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM 185 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc-cCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence 34789999999999999986 899999999882 344444 5678899999999999999988 569999999888766
Q ss_pred eEecccccc----------------eeEEEEccCCCEEEEEeCCC---------------------------------cE
Q 010324 343 KEFRGHSSY----------------VNDAIFTNDGSRVVTASSDC---------------------------------TV 373 (513)
Q Consensus 343 ~~~~~~~~~----------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i 373 (513)
.....+... +.+++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 544433322 47899999999999988765 78
Q ss_pred EEEeCCC-CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc-----CCCcEEEEEccCeEEEEeecCccCCC---c
Q 010324 374 KVWDLKS-TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN-----KTSSIYIMTLQGQVVKSFSSGKREGG---D 444 (513)
Q Consensus 374 ~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~~~~i~i~d~~~~~~~~~~~~~~~~~---~ 444 (513)
.+||+.+ ++....... ..+...+.+++| |++ ..++++. .+..|++||..+.....+..... .. .
T Consensus 266 ~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~ 338 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLG----KEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-PTWVPL 338 (741)
T ss_dssp EEECSSTTCCCEEECCC----SCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC-SSCCCC
T ss_pred EEEECCCCCceEEecCC----CCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC-CCcCCc
Confidence 9999988 775443221 135678999999 988 5555443 35679999998543333332211 11 2
Q ss_pred EEEEEECCCCCEEEEEecCceEEEEECC-CceeeEeeecccCCeEEE-EEcCCCCEEEE-EECCC--eEEecc
Q 010324 445 FVAACVSPKGEWIYCVGEDRNLYCFSHQ-SGKLEHLMKVHEKDVIGV-THHPHRNLLAT-YGEDC--TMKLWK 512 (513)
Q Consensus 445 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~-~~~p~~~~l~s-~~~dg--~i~iWd 512 (513)
+..++|+|||+++++++.+|.+.+|.+. ++. ...+..|...|..+ .|+|+++.|+. ++.|+ .++||+
T Consensus 339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 3478999999999999999977777654 344 67777788888887 59999987754 44555 889986
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=2.8e-25 Score=209.94 Aligned_cols=269 Identities=13% Similarity=0.181 Sum_probs=193.4
Q ss_pred EEEEEecCCeEEEEEeccc-cccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC-CcEEEEEcC--Ccce--ee
Q 010324 227 FLVSCSFDGFIEVVWDYLS-GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD-GKIKVWRIR--SGQC--LR 300 (513)
Q Consensus 227 ~la~g~~dg~i~~iwd~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-g~i~vwd~~--~~~~--~~ 300 (513)
.+++++.|+.|+ +|++.. +.... . ....|...+.+++|+|+|++|++++.+ +.|.+|++. +++. +.
T Consensus 7 l~~~~~~~~~v~-~~~~~~~~~~~~-~------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 78 (343)
T 1ri6_A 7 VYIASPESQQIH-VWNLNHEGALTL-T------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA 78 (343)
T ss_dssp EEEEEGGGTEEE-EEEECTTSCEEE-E------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCCeEE-EEEECCCCcEEE-e------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc
Confidence 444557899996 999863 32111 1 111267789999999999999998886 899999997 5553 33
Q ss_pred ecccccccCeEEEEEccCCCEEEEeeC-CCcEEEEecC---CCceeeEecccccceeEEEEccCCCEEEEEe-CCCcEEE
Q 010324 301 RLERAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLK---SGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKV 375 (513)
Q Consensus 301 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i 375 (513)
.+. ....+..++|+|+++++++++. ++.|.+||+. .++....+..+ ..+.+++|+|+|+++++++ .++.|.+
T Consensus 79 ~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~ 155 (343)
T 1ri6_A 79 ESA--LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICL 155 (343)
T ss_dssp EEE--CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEE
T ss_pred ccc--cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEE
Confidence 333 2337889999999998877765 7889999994 34444555433 4588999999999888887 8999999
Q ss_pred EeCCC-CceeE----eecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC--eE---EEEeecCc---cCC
Q 010324 376 WDLKS-TDCLQ----TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--QV---VKSFSSGK---REG 442 (513)
Q Consensus 376 wd~~~-~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~--~~---~~~~~~~~---~~~ 442 (513)
||+.+ ++... .... .....+..++|+|++..+++++..++.+.+|+++. .. ........ ...
T Consensus 156 ~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 230 (343)
T 1ri6_A 156 FTVSDDGHLVAQDPAEVTT-----VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT 230 (343)
T ss_dssp EEECTTSCEEEEEEEEEEC-----STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred EEecCCCceeeeccccccc-----CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence 99987 54432 1121 12346778999999854566666899999999952 11 22222111 123
Q ss_pred CcEEEEEECCCCCEEEEEe-cCceEEEEECC--C--ceeeEeeecccCCeEEEEEcCCCCEEEEEE-CCCeEEecc
Q 010324 443 GDFVAACVSPKGEWIYCVG-EDRNLYCFSHQ--S--GKLEHLMKVHEKDVIGVTHHPHRNLLATYG-EDCTMKLWK 512 (513)
Q Consensus 443 ~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~--~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~iWd 512 (513)
..+..++|+|+|++++++. .++.|.+||+. + .+.+..+..+.. +.+++|+|++++|++++ .|+.|.+|+
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEE
Confidence 4567899999999887555 79999999998 3 344555555544 88999999999888887 689999994
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=3.7e-25 Score=208.18 Aligned_cols=277 Identities=11% Similarity=0.095 Sum_probs=199.5
Q ss_pred EEECCCCCE-EEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCc
Q 010324 219 ARFSPDGQF-LVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-DGKIKVWRIRSG 296 (513)
Q Consensus 219 ~~~s~~g~~-la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~i~vwd~~~~ 296 (513)
..|.+++++ +++++.++.|. +||..+++....+.. +...+ +++|+|+|+++++++. ++.|.+||+.++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~-~~d~~~~~~~~~~~~--------~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~ 72 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRIS-FFSTDTLEILNQITL--------GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE 72 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEE-EEETTTCCEEEEEEC--------CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS
T ss_pred eeEcCCCCEEEEEecCCCeEE-EEeCcccceeeeEEc--------cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC
Confidence 356665555 67788899996 999998877654432 44556 9999999997777766 889999999999
Q ss_pred ce-eeecccccccCeEEEEEccCCCEEEEeeCCC---cEEEEecCCCceeeEecccccceeEEEEccCCCEEEEE-eCCC
Q 010324 297 QC-LRRLERAHSEGVTSLVFSRDGSQILSTSFDS---TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTA-SSDC 371 (513)
Q Consensus 297 ~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg 371 (513)
+. ...+. .+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+..+ ..+.+++|+|+|++++++ ..++
T Consensus 73 ~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~ 150 (331)
T 3u4y_A 73 PPKVVAIQ-EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSA 150 (331)
T ss_dssp SCEEEEEE-ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTT
T ss_pred ceeEEecc-cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCC
Confidence 87 55554 4555555599999999999665553 8999999999888877654 446899999999865555 5568
Q ss_pred c-EEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeE---EEEeecCccCCCcEE
Q 010324 372 T-VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQV---VKSFSSGKREGGDFV 446 (513)
Q Consensus 372 ~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~---~~~~~~~~~~~~~~~ 446 (513)
. |.+|++.....+.... ... ......+..+.|+|++..+++++..++.|.+||+. +.. +..+.. ...+.
T Consensus 151 ~~i~~~~~~~~g~~~~~~-~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~ 224 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTG-QEF-ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT----NNLPG 224 (331)
T ss_dssp TEEEEEEECTTCCEEEEE-EEE-ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC----SSCCC
T ss_pred ceEEEEEECCCCcEeecC-Ccc-ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC----CCCCc
Confidence 8 9999988644332111 000 01234578999999985566777789999999997 444 444443 24467
Q ss_pred EEEECCCCCEEEEEe-cCceEEEEECCCcee--eEeeecc----cC---CeEEEEEcCCCCEEEEEE-CCCeEEeccC
Q 010324 447 AACVSPKGEWIYCVG-EDRNLYCFSHQSGKL--EHLMKVH----EK---DVIGVTHHPHRNLLATYG-EDCTMKLWKP 513 (513)
Q Consensus 447 ~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~--~~~~~~h----~~---~v~~~~~~p~~~~l~s~~-~dg~i~iWdp 513 (513)
.++|+|+|+++++++ .++.|.+||..+++. +..+..+ .. ....++|+|++++|++++ .++.|.+||.
T Consensus 225 ~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 225 TIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp CEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred eEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence 899999999887766 578899999999887 3333322 22 235689999999876555 5679999984
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=7.9e-25 Score=206.24 Aligned_cols=266 Identities=10% Similarity=0.078 Sum_probs=201.6
Q ss_pred CEEEEEecCCeEEEEEeccccccccccccccccccccCCc-cEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCcceeeecc
Q 010324 226 QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDE-TVLCIEFSRDSEMLA-SGSQDGKIKVWRIRSGQCLRRLE 303 (513)
Q Consensus 226 ~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~ 303 (513)
+++++++.++.|. +||..+++....+.. ++.. .+.+++|+|+|+.++ +++.++.|.+||+.+++.+..+.
T Consensus 2 ~~~v~~~~~~~v~-~~d~~~~~~~~~~~~-------~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 2 DYILAPARPDKLV-VIDTEKMAVDKVITI-------ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEE-EEETTTTEEEEEEEC-------TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred cEEEEcCCCCeEE-EEECCCCcEEEEEEc-------CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 4789999999996 999998876654431 1211 478899999998765 45557899999999998877665
Q ss_pred ccc----ccCeEEEEEccCCCEEEEee------------CCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEE
Q 010324 304 RAH----SEGVTSLVFSRDGSQILSTS------------FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 304 ~~~----~~~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 367 (513)
..+ ...+.+++|+|+|+++++++ .++.|.+||+.+++.+..+.. ...+.+++|+|+|++++++
T Consensus 74 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE
T ss_pred cCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe
Confidence 322 22677899999999999886 579999999998888777764 4568889999999988888
Q ss_pred eCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC-----------------------cEEE
Q 010324 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS-----------------------SIYI 424 (513)
Q Consensus 368 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-----------------------~i~i 424 (513)
++.|.+||+.+++....+..... .. .+.++|++..+++++..++ .|.+
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~~----~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 223 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQSW----EA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT 223 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTTT----TT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred --CCeEEEEECCCCcEeeeeecccc----CC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEE
Confidence 68899999999987766653321 11 1256777644444433333 4689
Q ss_pred EEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEEC
Q 010324 425 MTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE 504 (513)
Q Consensus 425 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 504 (513)
||........... ..+...+..++|+|+|++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.
T Consensus 224 ~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~ 299 (337)
T 1pby_B 224 MDLETGEMAMREV-RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGA 299 (337)
T ss_dssp EETTTCCEEEEEE-EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESB
T ss_pred EeCCCCCceEeec-CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcC
Confidence 9988543332222 2234567789999999999988 799999999999988777644 56789999999999999999
Q ss_pred CCeEEeccC
Q 010324 505 DCTMKLWKP 513 (513)
Q Consensus 505 dg~i~iWdp 513 (513)
|+.|.+||+
T Consensus 300 ~~~i~v~d~ 308 (337)
T 1pby_B 300 LGDLAAYDA 308 (337)
T ss_dssp SSEEEEEET
T ss_pred CCcEEEEEC
Confidence 999999985
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=4.3e-25 Score=203.80 Aligned_cols=254 Identities=13% Similarity=0.083 Sum_probs=189.9
Q ss_pred EEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-cceeeeccccccc
Q 010324 230 SCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS-GQCLRRLERAHSE 308 (513)
Q Consensus 230 ~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~ 308 (513)
.++.|+.|. +||+.+++... +..|...|.+++|+|+|++|++++ ++.|++||+.+ ++........+..
T Consensus 17 ~~~~~~~i~-~~d~~~~~~~~---------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~ 85 (297)
T 2ojh_A 17 GGSMRSSIE-IFNIRTRKMRV---------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATI 85 (297)
T ss_dssp -CCCCEEEE-EEETTTTEEEE---------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCC
T ss_pred CCCcceeEE-EEeCCCCceee---------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccc
Confidence 356789996 99998876542 223788999999999999999987 78999999998 8776655423347
Q ss_pred CeEEEEEccCCCEEEEeeC--CCcEEE--EecCCCceeeEecccccceeEEEEccCCCEEE-EEeCCCcEEEEeCC--CC
Q 010324 309 GVTSLVFSRDGSQILSTSF--DSTARI--HGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVV-TASSDCTVKVWDLK--ST 381 (513)
Q Consensus 309 ~v~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~--~~ 381 (513)
.+.+++|+|++++|++++. ++...+ |+..+++ ...+..+. .+..++|+|++++++ +++.++.+++|+++ ++
T Consensus 86 ~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 86 CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence 7899999999999999983 344444 5554444 34444333 488899999999887 77789999999854 33
Q ss_pred ceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeEEEEeecCccCCCcEEEEEECCCCCEEEE
Q 010324 382 DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYC 459 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 459 (513)
.. ..+. .+...+.++.|+|++..+++++..++.+.+|+++ +.....+.. +...+..++|+|+|++|++
T Consensus 164 ~~-~~~~------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 164 VE-TRLT------HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD---SAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp CE-EECC------CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC---CSEEEEEEEECTTSSEEEE
T ss_pred cc-eEcc------cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec---CCcccCCeEECCCCCEEEE
Confidence 32 2222 3456789999999984445555568888888875 445544433 3356788999999999998
Q ss_pred EecC-----------ceEEEEECCCceee--EeeecccCCeEEEEEcCCCCEEEEEECCC
Q 010324 460 VGED-----------RNLYCFSHQSGKLE--HLMKVHEKDVIGVTHHPHRNLLATYGEDC 506 (513)
Q Consensus 460 g~~d-----------g~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 506 (513)
++.+ +.|++||+.+++.. ..+.+|...+.+++|+|+++.|++++.|.
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 234 VSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 8865 57999999988664 34447888999999999999998887654
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=9.6e-26 Score=235.32 Aligned_cols=284 Identities=13% Similarity=0.130 Sum_probs=202.8
Q ss_pred ceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCc---cEEEEEEcCCCCEEEEEeCC------
Q 010324 215 HAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDE---TVLCIEFSRDSEMLASGSQD------ 285 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~l~s~~~d------ 285 (513)
.+.+++|+|||+++++ +.||.|+ +||..+++....+. +|.. .|.+++|||||++|++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~-~~d~~~g~~~~~~~--------~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~ 87 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVR-LWNVETNTSTVLIE--------GKKIESLRAIRYEISPDREYALFSYNVEPIYQH 87 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEE-EBCGGGCCCEEEEC--------TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSS
T ss_pred cccccEEcCCCcEEEE-eCCCCEE-EEECCCCcEEEEec--------cccccccccceEEECCCCCEEEEEecCccceee
Confidence 4677899999998776 7899996 99999887543332 2433 48999999999999999864
Q ss_pred ---CcEEEEEcCCcceeeecc--cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccce--------
Q 010324 286 ---GKIKVWRIRSGQCLRRLE--RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV-------- 352 (513)
Q Consensus 286 ---g~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-------- 352 (513)
+.+.+||+.+++. ..+. ..+...+..++|+|||+.|++++. +.|++||+.+++.......+...+
T Consensus 88 ~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 88 SYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp CCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred cceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccce
Confidence 7888999998876 2332 134445889999999999999885 899999999887766555433323
Q ss_pred ----------eEEEEccCCCEEEEEeCCC----------------------------------cEEEEeCCCCceeEeec
Q 010324 353 ----------NDAIFTNDGSRVVTASSDC----------------------------------TVKVWDLKSTDCLQTFK 388 (513)
Q Consensus 353 ----------~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~ 388 (513)
.+++|+|||++|++++.|+ .|++||+.+++....+.
T Consensus 166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 7899999999999987553 79999999887655554
Q ss_pred CCCCCCCCCceeeEEEecCCCCCeEEEEcC----CCcEEEEEccCeEEEEeecCccCCCcE----EEEEECCCCCEEEEE
Q 010324 389 PPPPLRGGDASVNSVHLFPKNPDHIVVCNK----TSSIYIMTLQGQVVKSFSSGKREGGDF----VAACVSPKGEWIYCV 460 (513)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~s~~~~~l~~g 460 (513)
.+.....+...+.++.|+|++ ..+++... +..|++||+.+.......... +...+ ..++|+|||+.|+..
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEE
T ss_pred CCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEE
Confidence 332222346788999999998 46655432 357999999854333322111 11112 367999999977754
Q ss_pred --ecCc------eEEEEE-CCCce--eeEeeecccCCeEE-EEEcCCCCEEEEEECC---CeEEecc
Q 010324 461 --GEDR------NLYCFS-HQSGK--LEHLMKVHEKDVIG-VTHHPHRNLLATYGED---CTMKLWK 512 (513)
Q Consensus 461 --~~dg------~i~iwd-~~~~~--~~~~~~~h~~~v~~-~~~~p~~~~l~s~~~d---g~i~iWd 512 (513)
..++ .|++|| ..++. ....+..+...+.. ++|+|+++.|+..+.+ +.+++|+
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred EecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 4566 577888 44444 14445444444554 6999999999876655 7889986
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=9.6e-24 Score=199.33 Aligned_cols=275 Identities=16% Similarity=0.223 Sum_probs=191.3
Q ss_pred ccccCceeEEEECCCCCEEEEEecC-CeEEEEEecc--ccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC-C
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFD-GFIEVVWDYL--SGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-D 285 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~d-g~i~~iwd~~--~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d 285 (513)
..|...+.+++|+|+|++|++++.+ +.+. +|++. ++..... ..+..+ ..+.+++|+|++++|++++. +
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~-~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~s~dg~~l~~~~~~~ 105 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVL-AYRIAPDDGALTFA------AESALP-GSLTHISTDHQGQFVFVGSYNA 105 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEE-EEEECTTTCCEEEE------EEEECS-SCCSEEEECTTSSEEEEEETTT
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEE-EEEecCCCCceeec------cccccC-CCCcEEEEcCCCCEEEEEecCC
Confidence 3677789999999999999998887 8996 99997 4443211 111222 37889999999998877765 7
Q ss_pred CcEEEEEcC---CcceeeecccccccCeEEEEEccCCCEEEEee-CCCcEEEEecCC-Cceee----Eecc-cccceeEE
Q 010324 286 GKIKVWRIR---SGQCLRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKS-GKLLK----EFRG-HSSYVNDA 355 (513)
Q Consensus 286 g~i~vwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~~-~~~~v~~~ 355 (513)
+.|.+||+. +++....+. ....+.+++|+|+++++++++ .++.|.+||+.+ ++... .... ....+.++
T Consensus 106 ~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (343)
T 1ri6_A 106 GNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 183 (343)
T ss_dssp TEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred CeEEEEECCCCcccccccccc--CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceE
Confidence 889999994 444444443 345688999999999888887 899999999987 55432 2222 33468899
Q ss_pred EEccCCCEEEEEe-CCCcEEEEeCCC--Cce--eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--
Q 010324 356 IFTNDGSRVVTAS-SDCTVKVWDLKS--TDC--LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-- 428 (513)
Q Consensus 356 ~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-- 428 (513)
+|+|+++++++++ .++.|.+||+.. +.. ................+..++|+|++..+++++..++.|.+|++.
T Consensus 184 ~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~ 263 (343)
T 1ri6_A 184 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED 263 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC
Confidence 9999999776655 789999999954 332 222221111112234567899999985555567789999999997
Q ss_pred CeEEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEEC--CCcee--eEeeecccCCeEEEEEcCCC
Q 010324 429 GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSH--QSGKL--EHLMKVHEKDVIGVTHHPHR 496 (513)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~--~~~~~--~~~~~~h~~~v~~~~~~p~~ 496 (513)
+............ ..+..++|+|+|++|++++ .++.|.+|++ .+++. +..+.. .....+++|.|+.
T Consensus 264 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 264 GSVLSKEGFQPTE-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHE 334 (343)
T ss_dssp SCCEEEEEEEECS-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred CCceEEeeeecCC-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEccc
Confidence 3322222221112 2377899999999998888 6899999954 46643 334433 2456788888754
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=7.2e-24 Score=220.48 Aligned_cols=279 Identities=14% Similarity=0.177 Sum_probs=204.7
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI 293 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~ 293 (513)
..|.+++|||| +.++.+. ++.+. +||+.+++.... ..+...+.+++|+|||++|+++ .++.|++||+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~-~~d~~~~~~~~l---------~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~ 148 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLV-GFDMLARKVTYL---------FDTNEETASLDFSPVGDRVAYV-RNHNLYIARG 148 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEE-EEETTTTEEEEE---------ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEEC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEE-EEECCCCceEEc---------cCCcccccCCcCCCCCCEEEEE-ECCeEEEEec
Confidence 56999999999 6666654 59996 999988764322 2256678889999999999996 6899999999
Q ss_pred CC-----cceeeecccccccC--------------eEEEEEccCCCEEEEee----------------------------
Q 010324 294 RS-----GQCLRRLERAHSEG--------------VTSLVFSRDGSQILSTS---------------------------- 326 (513)
Q Consensus 294 ~~-----~~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------- 326 (513)
.+ ++...... .+... +.+++|+|||++|++++
T Consensus 149 ~~~~~~~g~~~~~~~-~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~ 227 (706)
T 2z3z_A 149 GKLGEGMSRAIAVTI-DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPM 227 (706)
T ss_dssp BCTTSCCCCCEESCS-CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCB
T ss_pred CcccccCCCcEEecc-CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCC
Confidence 98 77655443 23332 48899999999999987
Q ss_pred -----CCCcEEEEecCCCceeeEec--ccccceeEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceeEeecCCCCCC
Q 010324 327 -----FDSTARIHGLKSGKLLKEFR--GHSSYVNDAIFTNDGSRVVTASSDC-----TVKVWDLKSTDCLQTFKPPPPLR 394 (513)
Q Consensus 327 -----~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 394 (513)
.+..|++||+.+++...... .+...+.+++|+|||++|++++.++ .|.+||+.+++....+..... .
T Consensus 228 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~-~ 306 (706)
T 2z3z_A 228 AGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD-K 306 (706)
T ss_dssp TTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC-S
T ss_pred CCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC-C
Confidence 44679999998887654432 4567799999999999999987775 899999999843333321100 0
Q ss_pred CCCceeeEEEecC--CCCCeEEEEcCCCcEEEEEcc--CeEEEEeecCccCCCcEEE-EEECCCCCEEEEEec-Cc----
Q 010324 395 GGDASVNSVHLFP--KNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKREGGDFVA-ACVSPKGEWIYCVGE-DR---- 464 (513)
Q Consensus 395 ~~~~~v~~~~~~~--~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~~~~~~-~~~s~~~~~l~~g~~-dg---- 464 (513)
.....+.++.|+| ++ .++++++.++.+.+|.++ +.....+.. +...+.. ++|+|+|+.|++++. ++
T Consensus 307 ~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~~~~l~~---~~~~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRLIRQVTK---GEWEVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp SCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCEEEECCC---SSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred CeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCEEEecCC---CCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 1111346789999 77 688888889988888775 555555543 2344655 799999998876664 44
Q ss_pred eEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECC----CeEEeccC
Q 010324 465 NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED----CTMKLWKP 513 (513)
Q Consensus 465 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d----g~i~iWdp 513 (513)
.|+.||..+++. ..+. |...+.+++|+|++++++.++.+ +.|.+||.
T Consensus 383 ~l~~~d~~~~~~-~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 383 HFYCIDIKGGKT-KDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp EEEEEETTCCCC-EESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred EEEEEEcCCCCc-eecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 788888887763 3333 66779999999999988776543 56999974
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=6.7e-24 Score=222.02 Aligned_cols=276 Identities=11% Similarity=0.080 Sum_probs=204.7
Q ss_pred ceeEEEECCCCCEEEEEecCCeEEEEEecccc---ccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 215 HAECARFSPDGQFLVSCSFDGFIEVVWDYLSG---KLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~---~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
.|.+++|||||++|++++. +.|. +||+.++ ... .+..|...+.+++|+|||++|++++ ++.|++|
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~-~~d~~~~~~~~~~---------~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELY-LYDLKQEGKAAVR---------QLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVI 177 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEE-EEESSSCSTTSCC---------BCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEE-EEECCCCCcceEE---------EcccCCcccccccCCCCCCEEEEEe-CCcEEEE
Confidence 3889999999999999986 8995 9999887 332 2334778899999999999999987 5699999
Q ss_pred EcCCcceeeecccccccC----------------eEEEEEccCCCEEEEeeCCC--------------------------
Q 010324 292 RIRSGQCLRRLERAHSEG----------------VTSLVFSRDGSQILSTSFDS-------------------------- 329 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~l~~~~~dg-------------------------- 329 (513)
|+.+++...... .+... +.+++|+|||++|++++.|+
T Consensus 178 d~~~g~~~~~~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 178 DLASGRQMQLTA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp ETTTTEEEECCC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred ecCCCCEEEecc-CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 999887655443 23222 47899999999999988765
Q ss_pred -------cEEEEecCC-CceeeEec--ccccceeEEEEccCCCEEEEEeC-----CCcEEEEeCCCCceeEeecCCCCCC
Q 010324 330 -------TARIHGLKS-GKLLKEFR--GHSSYVNDAIFTNDGSRVVTASS-----DCTVKVWDLKSTDCLQTFKPPPPLR 394 (513)
Q Consensus 330 -------~i~i~d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~ 394 (513)
.|.+||+.+ ++...... .+...+.+++| |||++|++++. +..|.+||+.+++....+.....
T Consensus 257 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-- 333 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP-- 333 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS--
T ss_pred CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC--
Confidence 789999988 77554432 36778999999 99999987764 56799999999887665542210
Q ss_pred CCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeEEEEeecCccCCCcEEEE-EECCCCCEEEEEe-cCc--eEEE
Q 010324 395 GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKREGGDFVAA-CVSPKGEWIYCVG-EDR--NLYC 468 (513)
Q Consensus 395 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~~g~-~dg--~i~i 468 (513)
.....+.++.|+|++ .++++++.++.+.+|.++ +. ...+.. +...+..+ .|+|+|+.|++.+ .++ .+++
T Consensus 334 ~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~-~~~l~~---~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l 408 (741)
T 2ecf_A 334 TWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGK-AAALTH---GNWSVDELLAVDEKAGLAYFRAGIESARESQI 408 (741)
T ss_dssp SCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSC-EEESCC---SSSCEEEEEEEETTTTEEEEEECSSCTTCBEE
T ss_pred CcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCCC-eeeeee---cceEEEeEeEEeCCCCEEEEEEeCCCCceEEE
Confidence 001134678999998 488888889877777665 55 444443 24456666 5999999876554 455 8899
Q ss_pred EECCC-ceeeEeeecccCCeEEEEEcCCCCEEEEEECC----CeEEecc
Q 010324 469 FSHQS-GKLEHLMKVHEKDVIGVTHHPHRNLLATYGED----CTMKLWK 512 (513)
Q Consensus 469 wd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d----g~i~iWd 512 (513)
|++.. +.....+.. ...+..++|+|+++.|+....+ +.+.+|+
T Consensus 409 ~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 409 YAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFR 456 (741)
T ss_dssp EEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred EEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence 98864 554556654 5678899999999988766433 3466664
No 141
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=1.4e-23 Score=198.78 Aligned_cols=270 Identities=14% Similarity=0.122 Sum_probs=192.6
Q ss_pred EEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEE-EeCCCcEEEEEcCCc
Q 010324 218 CARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS-GSQDGKIKVWRIRSG 296 (513)
Q Consensus 218 ~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~~~dg~i~vwd~~~~ 296 (513)
.+++++++.++++++.++.|. +||..+++....+... ....+..++|+|+|+++++ +..++.|.+||+.++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~-~~d~~~~~~~~~~~~~-------~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~ 75 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLH-VVDVASDTVYKSCVMP-------DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC 75 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEE-EEETTTTEEEEEEECS-------SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred cccccCCCEEEEEeCCCCeEE-EEECCCCcEEEEEecC-------CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC
Confidence 457888999999999999996 9999988766544321 1125778999999986654 456899999999999
Q ss_pred ceeeeccccc-----ccCeEEEEEccCCCEEEEeeCC------------CcEEEEecCCCcee---eEecccccceeEEE
Q 010324 297 QCLRRLERAH-----SEGVTSLVFSRDGSQILSTSFD------------STARIHGLKSGKLL---KEFRGHSSYVNDAI 356 (513)
Q Consensus 297 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~---~~~~~~~~~v~~~~ 356 (513)
+....+...+ ...+..++|+|+|+++++++.+ +.|.+||+.+++.. ..+. +...+.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~ 154 (349)
T 1jmx_B 76 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMR 154 (349)
T ss_dssp EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEE
T ss_pred cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCccccee
Confidence 8877665222 2347889999999999998865 89999999885433 3333 334588999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCC--------------CC----ceeeEEEecCCCCC-------
Q 010324 357 FTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRG--------------GD----ASVNSVHLFPKNPD------- 411 (513)
Q Consensus 357 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------------~~----~~v~~~~~~~~~~~------- 411 (513)
|+|+|+ +++++. .|.+||+.+++....+........ .. .....+.+++++..
T Consensus 155 ~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 155 AADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp ECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred ECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 999999 665543 499999999988776653310000 00 02334555543211
Q ss_pred ---eEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECC-CCCEEEEEecCceEEEEECCCceeeEeeecccCCe
Q 010324 412 ---HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSP-KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDV 487 (513)
Q Consensus 412 ---~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v 487 (513)
++.....++.+.+++.. .....+..++++| +|++++++ ++.|++||+.+++.+..+..+ ..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~ 297 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFA-----------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTY 297 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEE-----------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCC
T ss_pred ceeEEEEeccCCcEEecccc-----------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCc
Confidence 11122333444444432 1344678999999 99999988 899999999999988777643 457
Q ss_pred EEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 488 IGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 488 ~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+++|+|+++.|++++.++.|.+||+
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEET
T ss_pred cceEECCCCCEEEEecCCCeEEEEec
Confidence 89999999998888888999999985
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=1.3e-22 Score=192.13 Aligned_cols=244 Identities=13% Similarity=0.138 Sum_probs=172.8
Q ss_pred CCccEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCcce--eeecccccccCeEEEEEccCCCEEEEee-CCCcEEEEec
Q 010324 263 HDETVLCIEFSRDSEMLASGSQ---DGKIKVWRIRSGQC--LRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGL 336 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~---dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~ 336 (513)
+...+..++|+|+|+ |++++. ++.|.+||+.++.. +..+. .+...+..++|+|+|++|++++ .++.|.+|++
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV-APGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE-EESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee-cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 456778899999999 655554 68999999977653 33322 4567788999999999998888 6789999999
Q ss_pred CC-Cc--eeeEeccc---------ccceeEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeEeecCCCCCCCCCceeeEE
Q 010324 337 KS-GK--LLKEFRGH---------SSYVNDAIFTNDGSRVVTASSDCTVKVWDLK-STDCLQTFKPPPPLRGGDASVNSV 403 (513)
Q Consensus 337 ~~-~~--~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
.. +. .+..+... ...+.+++|+|+|+.+++...++.|.+||+. +++......... .....+..+
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~---~~g~~p~~~ 192 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM---EAGFGPRHL 192 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC---CTTCCEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc---CCCCCCceE
Confidence 53 32 23333211 1247889999999966666678899999998 454322111000 112356789
Q ss_pred EecCCCCCeEEEEcCCCcEEEEEccC--eEEE---EeecCcc---CCCcEEEEEECCCCCEEEE-EecCceEEEEECCC-
Q 010324 404 HLFPKNPDHIVVCNKTSSIYIMTLQG--QVVK---SFSSGKR---EGGDFVAACVSPKGEWIYC-VGEDRNLYCFSHQS- 473 (513)
Q Consensus 404 ~~~~~~~~~l~~~~~~~~i~i~d~~~--~~~~---~~~~~~~---~~~~~~~~~~s~~~~~l~~-g~~dg~i~iwd~~~- 473 (513)
+|+|++..+++++..++.+.+|+++. .... .+..... ....+..++|+|+|++|++ ...++.|.+|++..
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 99999854666678889999999873 2222 2221111 1145788999999998855 45689999999873
Q ss_pred --ceeeEeeecccCCeEEEEEcCCCCEEEEEEC-CCeEEec
Q 010324 474 --GKLEHLMKVHEKDVIGVTHHPHRNLLATYGE-DCTMKLW 511 (513)
Q Consensus 474 --~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-dg~i~iW 511 (513)
.+.+..+..+...+.+++|+|++++|++++. ++.|.+|
T Consensus 273 g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 273 GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp GCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 2455666666677899999999998888875 4899999
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=9.9e-23 Score=191.50 Aligned_cols=268 Identities=10% Similarity=0.120 Sum_probs=190.0
Q ss_pred cccccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEec-CCeEEEEEecccccc-ccccccccccccccCCcc
Q 010324 189 TAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSF-DGFIEVVWDYLSGKL-KKDLQYQADETFMMHDET 266 (513)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~-dg~i~~iwd~~~~~~-~~~~~~~~~~~~~~h~~~ 266 (513)
.......+++....+....+..+ ...+ +++|+|+|+++++++. ++.|. +||..+++. ...+ ..+..+
T Consensus 17 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~-~~d~~~~~~~~~~~--------~~~~~~ 85 (331)
T 3u4y_A 17 QHLRRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLV-QIETQLEPPKVVAI--------QEGQSS 85 (331)
T ss_dssp GGGTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEE-EEECSSSSCEEEEE--------EECSSC
T ss_pred cCCCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEE-EEECCCCceeEEec--------ccCCCC
Confidence 33445556676667777777643 4555 9999999997776665 88995 999988875 3322 225555
Q ss_pred EEEEEEcCCCCEEEEEeCCC---cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEe-eCCCc-EEEEecCCCce
Q 010324 267 VLCIEFSRDSEMLASGSQDG---KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDST-ARIHGLKSGKL 341 (513)
Q Consensus 267 v~~l~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~i~d~~~~~~ 341 (513)
..+++|+|+|++++++..++ .|.+||+.+++.+..+. ......+++|+|+|++++++ ..++. |.+|++.....
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~ 163 (331)
T 3u4y_A 86 MADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGV 163 (331)
T ss_dssp CCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCC
T ss_pred ccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCc
Confidence 55599999999999555553 89999999998887765 44567999999999866655 55588 99999875433
Q ss_pred ee----EecccccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCce---eEeecCCCCCCCCCceeeEEEecCCCCCeE
Q 010324 342 LK----EFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWDLKSTDC---LQTFKPPPPLRGGDASVNSVHLFPKNPDHI 413 (513)
Q Consensus 342 ~~----~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 413 (513)
+. ........+.+++|+|+|+++++++ .++.|.+||+.+++. +..+.. ...+..++|+|++..++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 164 LFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-------NNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp EEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-------SSCCCCEEECTTSSEEE
T ss_pred EeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-------CCCCceEEECCCCCEEE
Confidence 21 1112345588999999999665555 689999999999887 666542 24667899999984455
Q ss_pred EEEcCCCcEEEEEccCeEE---EEeecC----ccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCcee
Q 010324 414 VVCNKTSSIYIMTLQGQVV---KSFSSG----KREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKL 476 (513)
Q Consensus 414 ~~~~~~~~i~i~d~~~~~~---~~~~~~----~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~ 476 (513)
++...++.|.+||.....+ ..+... .........++|+|+|++|++++ .++.|.+||+.....
T Consensus 237 v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 237 VLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred EEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 5556688999999984433 222221 11111124589999999987666 567999999987553
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.8e-23 Score=218.13 Aligned_cols=293 Identities=14% Similarity=0.154 Sum_probs=207.3
Q ss_pred cccccccCcccceeeeeccccC---ceeEEEECCCCCEEEEEecC---------CeEEEEEecccccccccccccccccc
Q 010324 193 KQDVEDMYPTTLSHTIKFGTKS---HAECARFSPDGQFLVSCSFD---------GFIEVVWDYLSGKLKKDLQYQADETF 260 (513)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~g~~la~g~~d---------g~i~~iwd~~~~~~~~~~~~~~~~~~ 260 (513)
....++....+....+. +|.. .|.+++|||||++||+++.+ +.+. +||+.+++.. .+. ..
T Consensus 38 ~i~~~d~~~g~~~~~~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~-~~d~~~~~~~-~l~-----~~ 109 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV-LSKIPHGDPQ-SLD-----PP 109 (723)
T ss_dssp CEEEBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE-EEESSSCCCE-ECC-----CT
T ss_pred CEEEEECCCCcEEEEec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEE-EEECCCCceE-ecc-----CC
Confidence 44456666655555554 5544 49999999999999999864 7885 9999987652 111 12
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccC------------------eEEEEEccCCCEE
Q 010324 261 MMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEG------------------VTSLVFSRDGSQI 322 (513)
Q Consensus 261 ~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~l 322 (513)
.+|...+.+++|||||+.|++++. +.|++||+.+++...... .+... +.+++|+|||+.|
T Consensus 110 ~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l 187 (723)
T 1xfd_A 110 EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL 187 (723)
T ss_dssp TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEeccCcceEEECCCCCEE
Confidence 235666889999999999999985 799999999887765544 33332 3789999999999
Q ss_pred EEeeCCC----------------------------------cEEEEecCCCceeeEeccc------ccceeEEEEccCCC
Q 010324 323 LSTSFDS----------------------------------TARIHGLKSGKLLKEFRGH------SSYVNDAIFTNDGS 362 (513)
Q Consensus 323 ~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~ 362 (513)
++++.|+ .|++||+.+++....+..+ ...+.+++|+|||+
T Consensus 188 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~ 267 (723)
T 1xfd_A 188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK 267 (723)
T ss_dssp EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred EEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe
Confidence 9887553 7999999888765556543 56789999999999
Q ss_pred EEEEEeC----CCcEEEEeCCCCceeEeecCCCCCCCCCcee----eEEEecCCCCCeEEE-EcCCC------cEEEEE-
Q 010324 363 RVVTASS----DCTVKVWDLKSTDCLQTFKPPPPLRGGDASV----NSVHLFPKNPDHIVV-CNKTS------SIYIMT- 426 (513)
Q Consensus 363 ~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~l~~-~~~~~------~i~i~d- 426 (513)
++++.+. +..|++||+.+++....+... +...+ ..+.|+|++..++++ +..++ .|++||
T Consensus 268 ~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~ 342 (723)
T 1xfd_A 268 VAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-----SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSS 342 (723)
T ss_dssp EEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-----CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECS
T ss_pred EEEEEEcCCCCeEEEEEEeCCCCcceEEEEec-----cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEec
Confidence 8877653 357999999998866554321 11222 367999998666655 55666 577777
Q ss_pred ccCeE---EEEeecCccCCCcEEE-EEECCCCCEEEEEecC---ceEEEEECCCce--eeEeeec---ccCCeEEEEEcC
Q 010324 427 LQGQV---VKSFSSGKREGGDFVA-ACVSPKGEWIYCVGED---RNLYCFSHQSGK--LEHLMKV---HEKDVIGVTHHP 494 (513)
Q Consensus 427 ~~~~~---~~~~~~~~~~~~~~~~-~~~s~~~~~l~~g~~d---g~i~iwd~~~~~--~~~~~~~---h~~~v~~~~~~p 494 (513)
..+.. ...+... ...+.. ++|+|+|+.|+..+.+ +.+.+|++.... ....+.. |...+..++|+|
T Consensus 343 ~~~~~~~~~~~l~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~sp 419 (723)
T 1xfd_A 343 QPNSSNDNIQSITSG---DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSH 419 (723)
T ss_dssp SCCSSSCCCCBSCCS---SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECT
T ss_pred cCCCCccceeEeecC---CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECC
Confidence 34433 3333321 223444 6899999999876655 789999886432 3334443 567789999999
Q ss_pred CCCEEEEEE
Q 010324 495 HRNLLATYG 503 (513)
Q Consensus 495 ~~~~l~s~~ 503 (513)
++++|+...
T Consensus 420 dg~~l~~~~ 428 (723)
T 1xfd_A 420 SMDFFLLKC 428 (723)
T ss_dssp TSSEEEEEC
T ss_pred CCCEEEEEc
Confidence 999877653
No 145
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=1.9e-22 Score=195.81 Aligned_cols=210 Identities=11% Similarity=0.086 Sum_probs=158.3
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccc--------cccccccccccccCCccEEEEEEcCCCCEEE----
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLK--------KDLQYQADETFMMHDETVLCIEFSRDSEMLA---- 280 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~--------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~---- 280 (513)
...++++++++++.++++|+.|+ ++ +|+....... ........ ....+...|.+++|+|+|++|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~-v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQ-IFPTKNLLIQNKPGDDPNKIVDKVQG-LLVPMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EE-EEEHHHHCCCCCTTCCTTCEEECCCC-EEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EE-EEEchHhhhhcccccCcccccccCcc-ccccCCCcccEEEEcCCCCEEEEEEe
Confidence 34688999999999999999998 75 7775432110 00000011 1123567899999999999999
Q ss_pred EEeCCCcEEEEEcCCc--------ce---eeecccccccCeEEEEEccC-CCEEEEeeCCCcEEEEecCCCceeeEeccc
Q 010324 281 SGSQDGKIKVWRIRSG--------QC---LRRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEFRGH 348 (513)
Q Consensus 281 s~~~dg~i~vwd~~~~--------~~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 348 (513)
+|+.|+.|++||+.++ +. ...+ .+|...|.+++|+|+ +.+|++++.||+|++||++++..+....+|
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeecc-CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 7888999999999765 21 2333 368999999999997 889999999999999999998777777778
Q ss_pred ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCC-CCCceeeEEEecCCCCCeE-EEEcCCC------
Q 010324 349 SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLR-GGDASVNSVHLFPKNPDHI-VVCNKTS------ 420 (513)
Q Consensus 349 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l-~~~~~~~------ 420 (513)
...|.+++|+|+|++|++|+.||.|++||++ ++....+..+.... .+...+.++.|+++. .++ +.++.+|
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~ 269 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSP 269 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCC
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCC
Confidence 8899999999999999999999999999998 55555554433221 244589999999865 333 3344443
Q ss_pred cEEEEEcc
Q 010324 421 SIYIMTLQ 428 (513)
Q Consensus 421 ~i~i~d~~ 428 (513)
.+++|++.
T Consensus 270 ~v~i~~l~ 277 (434)
T 2oit_A 270 DVVMALLP 277 (434)
T ss_dssp EEEEEECC
T ss_pred ceEEEEec
Confidence 38999987
No 146
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=5.5e-23 Score=208.70 Aligned_cols=268 Identities=14% Similarity=0.144 Sum_probs=194.5
Q ss_pred cccCceeEEEECCCCCEEEEEec-CCeEEEEEeccccccccccccccccccccCC-ccEEEEEEcCCCCEEEEEeC---C
Q 010324 211 GTKSHAECARFSPDGQFLVSCSF-DGFIEVVWDYLSGKLKKDLQYQADETFMMHD-ETVLCIEFSRDSEMLASGSQ---D 285 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~-dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~~~---d 285 (513)
.+..+|++++|+|||++||+++. ||+++ ||++.+++... +..|. ..+.+++|+|| +.+++++. +
T Consensus 19 ~~~~~~~~~~~~~DG~~la~~s~~~g~~~-lw~~~~g~~~~---------lt~~~~~~~~~~~~spd-~~l~~~~~~~g~ 87 (582)
T 3o4h_A 19 LIAVEKYSLQGVVDGDKLLVVGFSEGSVN-AYLYDGGETVK---------LNREPINSVLDPHYGVG-RVILVRDVSKGA 87 (582)
T ss_dssp HHHSCEEEEEEEETTTEEEEEEEETTEEE-EEEEETTEEEE---------CCSSCCSEECEECTTCS-EEEEEEECSTTS
T ss_pred HhccchheeecCCCCCeEEEEEccCCcee-EEEEcCCCcEe---------eecccccccccccCCCC-eEEEEeccCCCC
Confidence 44567999999999999999887 99998 99986654332 22244 68999999999 77777765 4
Q ss_pred CcEEEEEcCC---cceeeecccccccCeEEEEEccCCCE-EEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCC
Q 010324 286 GKIKVWRIRS---GQCLRRLERAHSEGVTSLVFSRDGSQ-ILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG 361 (513)
Q Consensus 286 g~i~vwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 361 (513)
....+|.+.. +... .+. ....+...+|+|+|+. +++.+.++.+.+||+.+++.......+ . .+++|+|||
T Consensus 88 ~~~~l~~~~~~~~g~~~-~l~--~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG 161 (582)
T 3o4h_A 88 EQHALFKVNTSRPGEEQ-RLE--AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRG 161 (582)
T ss_dssp CCEEEEEEETTSTTCCE-ECT--TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEET
T ss_pred cceEEEEEeccCCCccc-ccc--CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCC
Confidence 5566665543 3322 333 2223456788888864 334444555669999888765444332 2 889999999
Q ss_pred CEEEEEeCC----CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC--cEEEEEccCeEEEEe
Q 010324 362 SRVVTASSD----CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVVKSF 435 (513)
Q Consensus 362 ~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~--~i~i~d~~~~~~~~~ 435 (513)
+++++++.+ +.|++||+.+++.. .+. .+...+.+++|+|++ ..++++..++ .|++||+.+.....+
T Consensus 162 ~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~------~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~~~ 233 (582)
T 3o4h_A 162 DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD------SGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSVEDL 233 (582)
T ss_dssp TEEEEEEEEETTEEEEEEEETTTCCCE-EEC------CSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCEEEC
T ss_pred CEEEEEEEcCCCCeEEEEEcCCCCCce-Eee------cCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcEEEc
Confidence 999988877 78999999988754 332 456678999999998 6777888888 899999986555432
Q ss_pred ecCccCCCcEEEEE--------ECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCe
Q 010324 436 SSGKREGGDFVAAC--------VSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCT 507 (513)
Q Consensus 436 ~~~~~~~~~~~~~~--------~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 507 (513)
.. +...+..++ |+|||.++++++.+|.+++|++ |+... .+.+.|.+++|+ ++.++++++.+.+
T Consensus 234 ~~---~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 234 EL---PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp CC---SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred cC---CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCC
Confidence 22 222333344 9999999999999999999999 66554 344678999999 9999998887744
Q ss_pred ---EEecc
Q 010324 508 ---MKLWK 512 (513)
Q Consensus 508 ---i~iWd 512 (513)
+.+||
T Consensus 305 p~~l~~~d 312 (582)
T 3o4h_A 305 PPRIVSLP 312 (582)
T ss_dssp EEEEEEET
T ss_pred CCeEEEEc
Confidence 66665
No 147
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=7.9e-23 Score=221.15 Aligned_cols=275 Identities=13% Similarity=0.104 Sum_probs=213.0
Q ss_pred ccCceeEEEEC-CCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCc-cEEEEEEcCCCCEEEEEeCCCcEE
Q 010324 212 TKSHAECARFS-PDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDE-TVLCIEFSRDSEMLASGSQDGKIK 289 (513)
Q Consensus 212 h~~~v~~~~~s-~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~i~ 289 (513)
|...+.+++|| |||++||+++ ++.+. +|+..++.... +..|.. .+.+++|+ ||+.|++++.++.+.
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~-~~~~~~~~~~~---------~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~ 361 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAF-IQDVSGTYVLK---------VPEPLRIRYVRRGGD-TKVAFIHGTREGDFL 361 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEE-EECTTSSBEEE---------CSCCSCEEEEEECSS-SEEEEEEEETTEEEE
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEE-EEcCCCCceEE---------ccCCCcceEEeeeEc-CCCeEEEEECCCceE
Confidence 45579999999 9999999988 78895 99988765332 233666 89999999 999999999888888
Q ss_pred -EEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEe
Q 010324 290 -VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS 368 (513)
Q Consensus 290 -vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 368 (513)
+||+.+++.. .+. .+...+..++|+|||++|++++.++.|++||+.+++.......|...+.+++|+|||++|++++
T Consensus 362 ~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~ 439 (1045)
T 1k32_A 362 GIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF 439 (1045)
T ss_dssp EEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred EEEECCCCCce-Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEe
Confidence 9998877643 444 6778899999999999999999999999999999988877778888999999999999999887
Q ss_pred CCC----------cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEE------
Q 010324 369 SDC----------TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV------ 432 (513)
Q Consensus 369 ~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~------ 432 (513)
.++ .|++||+.+++ ...+. .+...+.++.|+|++ ..+++++.++....|+......
T Consensus 440 ~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~------~~~~~~~~~~~spdG-~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 511 (1045)
T 1k32_A 440 PLKHGETDGYVMQAIHVYDMEGRK-IFAAT------TENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVS 511 (1045)
T ss_dssp EECSSTTCSCCEEEEEEEETTTTE-EEECS------CSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCSCB
T ss_pred cCccccccCCCCCeEEEEECCCCc-EEEee------CCCcccCCceEcCCC-CEEEEEecccCCcCcchhccccccccCc
Confidence 654 89999999876 33333 345677889999998 6777777766655565321100
Q ss_pred --EEe---------------------------------ecCccCCCcEEEEEECCCCCEEEE-------------EecCc
Q 010324 433 --KSF---------------------------------SSGKREGGDFVAACVSPKGEWIYC-------------VGEDR 464 (513)
Q Consensus 433 --~~~---------------------------------~~~~~~~~~~~~~~~s~~~~~l~~-------------g~~dg 464 (513)
..+ .....+...+..++++|+|.++++ ....+
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~ 591 (1045)
T 1k32_A 512 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 591 (1045)
T ss_dssp EEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCE
T ss_pred eeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCc
Confidence 000 000113356788999999987775 12356
Q ss_pred eEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 465 NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 465 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.|++||+.+++..... ..+.+++|+|||+.|++++.| .|++||.
T Consensus 592 ~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~ 635 (1045)
T 1k32_A 592 VLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRKDD-GKIYTFP 635 (1045)
T ss_dssp EEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEETT-SCEEEEE
T ss_pred eEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEcCC-cEEEEeC
Confidence 8999999988754333 568899999999999999866 7999973
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=9.8e-23 Score=220.44 Aligned_cols=276 Identities=11% Similarity=0.080 Sum_probs=216.7
Q ss_pred ccccCceeEEEECCCCCEEEEEecCCeEEEEEeccc-cccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcE
Q 010324 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLS-GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKI 288 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 288 (513)
.+|...+.++.|+++ .++++++.|+.++ +|.+.. +.... .+..|. .+...+|+|||+.|+++. ++.|
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~-l~~~~~~g~~~~--------~l~~~~-~~~~~~~SpDG~~la~~~-~~~i 267 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQ-IYSTDLDGKDLR--------KHTSFT-DYYPRHLNTDGRRILFSK-GGSI 267 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCE-EEEEETTSCSCE--------ECCCCC-SSCEEEEEESSSCEEEEE-TTEE
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceE-EEEEeCCCCcce--------EecCCC-CcceeeEcCCCCEEEEEe-CCEE
Confidence 489999999999998 6777888889997 998764 22221 122233 456779999999999885 8999
Q ss_pred EEEEcCCcceeeeccc----------ccccCeEEEEEc-cCCCEEEEeeCCCcEEEEecCCCceeeEeccccc-ceeEEE
Q 010324 289 KVWRIRSGQCLRRLER----------AHSEGVTSLVFS-RDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS-YVNDAI 356 (513)
Q Consensus 289 ~vwd~~~~~~~~~~~~----------~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~ 356 (513)
.+||+.... +..+.. .+...+.+++|+ |||+.+++++ ++.|.+|++.+++.. .+..+.. .+.+++
T Consensus 268 ~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~ 344 (1045)
T 1k32_A 268 YIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRG 344 (1045)
T ss_dssp EEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEEC
T ss_pred EEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeee
Confidence 999985443 334431 133468999999 9999999888 889999999877654 4556666 899999
Q ss_pred EccCCCEEEEEeCCCcEE-EEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEe
Q 010324 357 FTNDGSRVVTASSDCTVK-VWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSF 435 (513)
Q Consensus 357 ~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 435 (513)
|+ +|+.+++++.++.+. +||+.+++... +. .+...+..++|+|++ ..+++++.++.+++||+.+.....+
T Consensus 345 ~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~------~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~ 415 (1045)
T 1k32_A 345 GD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FE------ENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVI 415 (1045)
T ss_dssp SS-SEEEEEEEETTEEEEEEEETTTCCEEE-CC------CCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEE
T ss_pred Ec-CCCeEEEEECCCceEEEEECCCCCceE-ec------CCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEEe
Confidence 99 999999999888888 99998765432 22 345678999999998 8888999999999999985544444
Q ss_pred ecCccCCCcEEEEEECCCCCEEEEEecCc----------eEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECC
Q 010324 436 SSGKREGGDFVAACVSPKGEWIYCVGEDR----------NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 505 (513)
Q Consensus 436 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg----------~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d 505 (513)
... +...+..++|+|||++|++++.++ .|++||+.+++ ...+..|...+..++|+|+|+.|++++.+
T Consensus 416 ~~~--~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 416 ERS--REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYR 492 (1045)
T ss_dssp EEC--SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred ccC--CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence 322 345577899999999999887654 89999999887 56677788889999999999999999988
Q ss_pred CeEEecc
Q 010324 506 CTMKLWK 512 (513)
Q Consensus 506 g~i~iWd 512 (513)
+...+|+
T Consensus 493 ~~~~~~~ 499 (1045)
T 1k32_A 493 SLDPSPD 499 (1045)
T ss_dssp CCCCEEC
T ss_pred cCCcCcc
Confidence 8887775
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=1.2e-22 Score=211.22 Aligned_cols=282 Identities=11% Similarity=0.088 Sum_probs=195.5
Q ss_pred eeEEEECCCCCEEEEEecCCeEEEEEecccccc--ccccccccc--------cccccCCccEEEEEEcCCCCEEEEEeCC
Q 010324 216 AECARFSPDGQFLVSCSFDGFIEVVWDYLSGKL--KKDLQYQAD--------ETFMMHDETVLCIEFSRDSEMLASGSQD 285 (513)
Q Consensus 216 v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~--~~~~~~~~~--------~~~~~h~~~v~~l~~~~~~~~l~s~~~d 285 (513)
+..+.|+ |+.+++++.|+ | +||..+++. ......... .....+...|.+++|+|| +.++.+. +
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i--~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L--VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E--EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred CCCCcCc--CCeEEEEeCCc-E--EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 3446777 66777777787 5 899998876 222111000 000011256999999999 6666654 6
Q ss_pred CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC-----CceeeEecccccc---------
Q 010324 286 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS-----GKLLKEFRGHSSY--------- 351 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~--------- 351 (513)
+.|++||+.+++..... .+...+.+++|+|||+.|+++ .++.|++||+.+ ++.......+...
T Consensus 101 ~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ 177 (706)
T ss_dssp TEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred CEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence 99999999988765443 356678899999999999985 689999999988 7665544433332
Q ss_pred -----eeEEEEccCCCEEEEEe---------------------------------CCCcEEEEeCCCCceeEeecCCCCC
Q 010324 352 -----VNDAIFTNDGSRVVTAS---------------------------------SDCTVKVWDLKSTDCLQTFKPPPPL 393 (513)
Q Consensus 352 -----v~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~ 393 (513)
+.++.|+|||++|++++ .+..|.+||+.+++.......
T Consensus 178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~---- 253 (706)
T 2z3z_A 178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG---- 253 (706)
T ss_dssp GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC----
T ss_pred hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC----
Confidence 48999999999999987 456799999998875443221
Q ss_pred CCCCceeeEEEecCCCCCeEEEEcCCC-----cEEEEEccCe-EEEEeecCccC--CCcEEEEEECC--CCCEEEEEecC
Q 010324 394 RGGDASVNSVHLFPKNPDHIVVCNKTS-----SIYIMTLQGQ-VVKSFSSGKRE--GGDFVAACVSP--KGEWIYCVGED 463 (513)
Q Consensus 394 ~~~~~~v~~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~-~~~~~~~~~~~--~~~~~~~~~s~--~~~~l~~g~~d 463 (513)
..+...+.++.|+|++ ..+++++.++ .|++||..+. ....+...... ...+..++|+| +|+++++++.+
T Consensus 254 ~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp SCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred CCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence 1355678999999998 6666665554 8999999854 44444322111 11235679999 99999999999
Q ss_pred ceEEEEECC-CceeeEeeecccCCeEE-EEEcCCCCEEEEEECC-C----eEEecc
Q 010324 464 RNLYCFSHQ-SGKLEHLMKVHEKDVIG-VTHHPHRNLLATYGED-C----TMKLWK 512 (513)
Q Consensus 464 g~i~iwd~~-~~~~~~~~~~h~~~v~~-~~~~p~~~~l~s~~~d-g----~i~iWd 512 (513)
|.+.+|.+. ++..+..+..|...+.. ++|+|+++.|+.++.+ + .|..||
T Consensus 333 g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 333 GWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp SSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred CccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 998898876 66777777778778877 8999999877666544 4 455554
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=2.1e-22 Score=185.77 Aligned_cols=234 Identities=16% Similarity=0.170 Sum_probs=171.9
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccc-cccccccccccccccccC-CccEEEEEEcCCCCEEEEEeC--CC
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLS-GKLKKDLQYQADETFMMH-DETVLCIEFSRDSEMLASGSQ--DG 286 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~-~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~~--dg 286 (513)
.|...|.+++|+|+|++|++++ ++.|. +||+.+ ++...... +| ...+.+++|+|++++|++++. ++
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~-~~d~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~~~~~~~~~ 108 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNS-EGLLY-RLSLAGDPSPEKVDT--------GFATICNNDHGISPDGALYAISDKVEFG 108 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEE-TTEEE-EEESSSCCSCEECCC--------TTCCCBCSCCEECTTSSEEEEEECTTTS
T ss_pred cCCcceEeeEECCCCCEEEEEc-CCeEE-EEeCCCCCCceEecc--------ccccccccceEECCCCCEEEEEEeCCCC
Confidence 6888999999999999999987 78995 999988 66543221 23 467899999999999999983 34
Q ss_pred cEEEE--EcCCcceeeecccccccCeEEEEEccCCCEEE-EeeCCCcEEEEecCC-CceeeEecccccceeEEEEccCCC
Q 010324 287 KIKVW--RIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGLKS-GKLLKEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 287 ~i~vw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 362 (513)
...|| +..++. ...+. ....+..++|+|+++.|+ +++.++.+.+|+++. +.....+..+...+.+++|+|+|+
T Consensus 109 ~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 185 (297)
T 2ojh_A 109 KSAIYLLPSTGGT-PRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGR 185 (297)
T ss_dssp SCEEEEEETTCCC-CEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSS
T ss_pred cceEEEEECCCCc-eEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCC
Confidence 55555 445544 33443 334589999999999887 777899999998632 334456666778899999999999
Q ss_pred EEEEEe-CCCcEEEEeCC-CCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC-----------CcEEEEEccC
Q 010324 363 RVVTAS-SDCTVKVWDLK-STDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-----------SSIYIMTLQG 429 (513)
Q Consensus 363 ~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-----------~~i~i~d~~~ 429 (513)
++++++ .++.+++|++. .+.....+. .+...+.++.|+|++ ..+++++.+ +.|++||+.+
T Consensus 186 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 186 WIYFNSSRTGQMQIWRVRVDGSSVERIT------DSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCEEECC------CCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEEEEecCCCCccEEEECCCCCCcEEEe------cCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 888776 58999999886 444444443 345688899999988 556555544 5699999985
Q ss_pred eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc
Q 010324 430 QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR 464 (513)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 464 (513)
.....+.....+...+..++|+|+|++|++++.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 259 GNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 54333332222345677899999999998887553
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=3.9e-22 Score=187.75 Aligned_cols=271 Identities=13% Similarity=0.142 Sum_probs=198.2
Q ss_pred ccccccCcccceeeeeccccC-ceeEEEECCCCCEEE-EEecCCeEEEEEeccccccccccccccccccccCCccEEEEE
Q 010324 194 QDVEDMYPTTLSHTIKFGTKS-HAECARFSPDGQFLV-SCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIE 271 (513)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~g~~la-~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 271 (513)
...++....+....+..++.. .+.+++|+|+|++++ +++.++.|. +||..+++....+..... ..|...+.+++
T Consensus 13 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~-~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~ 88 (337)
T 1pby_B 13 LVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLV-KIDLVTGETLGRIDLSTP---EERVKSLFGAA 88 (337)
T ss_dssp EEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEE-EEETTTCCEEEEEECCBT---TEEEECTTCEE
T ss_pred EEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEE-EEECCCCCeEeeEEcCCc---ccccccccceE
Confidence 334555555566666555533 488999999998765 556678995 999998876654432110 00223577899
Q ss_pred EcCCCCEEEEEe------------CCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC
Q 010324 272 FSRDSEMLASGS------------QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG 339 (513)
Q Consensus 272 ~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 339 (513)
|+|+|+++++++ .++.|.+||+.+++.+..+. ....+.+++|+|++++++++ ++.|.+||+.++
T Consensus 89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~ 164 (337)
T 1pby_B 89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGL--GRDLHVMDPEAG 164 (337)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTT
T ss_pred ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCCEEEEe--CCeEEEEECCCC
Confidence 999999999886 57999999999988877765 34567889999999988888 689999999999
Q ss_pred ceeeEecccccceeEEEEccCCCEEEEEeCCC------------------------cEEEEeCCCCceeEeecCCCCCCC
Q 010324 340 KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC------------------------TVKVWDLKSTDCLQTFKPPPPLRG 395 (513)
Q Consensus 340 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~ 395 (513)
+....+..+.. ...+.|+|++..++.++.++ .|.+||+.+++.. ..... .
T Consensus 165 ~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~----~ 238 (337)
T 1pby_B 165 TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR----I 238 (337)
T ss_dssp EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE----E
T ss_pred cEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC----C
Confidence 88777764431 11337899988766554332 4689999988765 32211 2
Q ss_pred CCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc
Q 010324 396 GDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 396 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 474 (513)
+...+.+++++|++ ..++++ ++.|.+||+. ++....+... ..+.+++|+|+|+++++++.++.|++||+.++
T Consensus 239 ~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 239 MDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASIKRVPLP----HSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp CSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEEEEEECS----SCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred CCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCcCcceecCC----CceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 34567889999987 666666 7999999998 4444444432 34678999999999999999999999999999
Q ss_pred eeeEeeecccC
Q 010324 475 KLEHLMKVHEK 485 (513)
Q Consensus 475 ~~~~~~~~h~~ 485 (513)
+.+..+..+.+
T Consensus 312 ~~~~~~~~~~~ 322 (337)
T 1pby_B 312 EKKGQVDLPGN 322 (337)
T ss_dssp CEEEEEECGGG
T ss_pred cEEEEEEcCCC
Confidence 98888876543
No 152
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=2.3e-21 Score=183.82 Aligned_cols=240 Identities=8% Similarity=0.081 Sum_probs=189.2
Q ss_pred CCccEEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEe-eCCCcEEEE
Q 010324 263 HDETVLCIEFSRDSEMLASGSQ-------DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDSTARIH 334 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~ 334 (513)
....+..++|+|+++++++++. ++.|.+||..+++.+..+. ....+..++|+|+|++++++ ..++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 3456889999999999888874 5689999999999888775 34557889999999966555 557999999
Q ss_pred ecCCCceeeEeccccc---------ceeEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEE
Q 010324 335 GLKSGKLLKEFRGHSS---------YVNDAIFTNDGSRVVTAS--SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSV 403 (513)
Q Consensus 335 d~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (513)
|..+++.+..+..+.. .+.+++|+|+|+++++++ .++.|.+||..+++....+.. ....+..+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~ 190 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN------TGKMSTGL 190 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC------CCTTCCCC
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC------CCCccceE
Confidence 9999998887765432 268899999999887776 478899999999988877652 22346778
Q ss_pred EecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCcc-CCCcEEEEEECCCCCEEEEEec-CceEEEEECCCceeeEee
Q 010324 404 HLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKR-EGGDFVAACVSPKGEWIYCVGE-DRNLYCFSHQSGKLEHLM 480 (513)
Q Consensus 404 ~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~ 480 (513)
.++|++ ..+++++.++.+.+||.. +.....+..... +...+..++|+|+|+++++++. ++.|++||..+++.+..+
T Consensus 191 ~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 191 ALDSEG-KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp EEETTT-TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred EECCCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 999988 778888889999999998 445545444222 3456778999999998877775 599999999999988877
Q ss_pred ecccCCeEEEEEcCCCCEEEEEE-CCCeEEeccC
Q 010324 481 KVHEKDVIGVTHHPHRNLLATYG-EDCTMKLWKP 513 (513)
Q Consensus 481 ~~h~~~v~~~~~~p~~~~l~s~~-~dg~i~iWdp 513 (513)
..+. ..+++|+|+++.++.++ .++.|.+||+
T Consensus 270 ~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 270 AAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp ECSS--CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EcCC--CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 7543 36799999999665555 7899999985
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=2.4e-21 Score=183.35 Aligned_cols=260 Identities=13% Similarity=0.145 Sum_probs=176.2
Q ss_pred cccCceeEEEECCCCCEEEEEec---CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEe-CCC
Q 010324 211 GTKSHAECARFSPDGQFLVSCSF---DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS-QDG 286 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~---dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg 286 (513)
.+...+..++|+|||+ |++++. ++.|. +|++.++..... ..+..+...+..++|+|+|++|++++ .++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~-~~~~~~g~~~~~------~~~~~~~~~p~~~a~spdg~~l~~~~~~~~ 108 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIA-AWQIDGQTAHKL------NTVVAPGTPPAYVAVDEARQLVYSANYHKG 108 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEE-EEEEETTEEEEE------EEEEEESCCCSEEEEETTTTEEEEEETTTT
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEE-EEEecCCcEEEe------eeeecCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 5567788899999999 555544 68895 999976653211 12223667888999999999998888 678
Q ss_pred cEEEEEcCC-cc--eeeecccc--------cccCeEEEEEccCCCEEEEeeCCCcEEEEecC-CCceee--Eecc-cccc
Q 010324 287 KIKVWRIRS-GQ--CLRRLERA--------HSEGVTSLVFSRDGSQILSTSFDSTARIHGLK-SGKLLK--EFRG-HSSY 351 (513)
Q Consensus 287 ~i~vwd~~~-~~--~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~--~~~~-~~~~ 351 (513)
.|.+|++.. +. .+..+... ....+.+++|+|+|+.+++...++.|.+|++. +++... .+.. ....
T Consensus 109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 188 (347)
T 3hfq_A 109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFG 188 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCC
T ss_pred EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCC
Confidence 999999963 32 22222211 12348899999999966666678899999998 454322 2222 2335
Q ss_pred eeEEEEccCCCEEEE-EeCCCcEEEEeCCC--Cce--eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEE
Q 010324 352 VNDAIFTNDGSRVVT-ASSDCTVKVWDLKS--TDC--LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT 426 (513)
Q Consensus 352 v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d 426 (513)
+..++|+|+|+++++ ...++.|.+|++.. ++. ...+............+..++|+|++..++++...++.|.+|+
T Consensus 189 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 189 PRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred CceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 788999999996666 45688999999874 432 2222221111112256889999999844556777789999999
Q ss_pred cc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEec-CceEEEE--ECCCceeeE
Q 010324 427 LQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGE-DRNLYCF--SHQSGKLEH 478 (513)
Q Consensus 427 ~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw--d~~~~~~~~ 478 (513)
+. ............+...+..++|+|+|++|++++. ++.|.+| |..++++..
T Consensus 269 ~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 269 VTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp ECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred ECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 87 2222222222222345678999999999988875 4899999 555676553
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=2.3e-20 Score=177.57 Aligned_cols=268 Identities=13% Similarity=0.168 Sum_probs=182.3
Q ss_pred ccCceeEEEECCCCCEEEEEecC----CeEEEEEeccc--cccccccccccccccccCCccEEEEEEcCCCCEEEEEe-C
Q 010324 212 TKSHAECARFSPDGQFLVSCSFD----GFIEVVWDYLS--GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS-Q 284 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~d----g~i~~iwd~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~ 284 (513)
+...+..++|+|||++|++++.+ +.+. +|++.. +..... .....+...+..+++ ++++|++++ .
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~-~~~~~~~~g~~~~~------~~~~~~~~~p~~~~~--dg~~l~~~~~~ 118 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVS-AFAFDKEKGTLHLL------NTQKTMGADPCYLTT--NGKNIVTANYS 118 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEE-EEEEETTTTEEEEE------EEEECSSSCEEEEEE--CSSEEEEEETT
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEE-EEEEeCCCCcEEEe------eEeccCCCCcEEEEE--CCCEEEEEECC
Confidence 66778889999999999999886 7896 998875 332211 112224566778888 788787776 5
Q ss_pred CCcEEEEEcCCcceeeecc-------------cccccCeEEEEEccCCCEEEEee-CCCcEEEEecCCCce------e--
Q 010324 285 DGKIKVWRIRSGQCLRRLE-------------RAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKSGKL------L-- 342 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------~-- 342 (513)
++.|.+|++.....+.... ..+...+.+++|+|+|+++++++ .++.|.+|++..... +
T Consensus 119 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~ 198 (361)
T 3scy_A 119 GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLT 198 (361)
T ss_dssp TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEE
T ss_pred CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceee
Confidence 7899999997544332221 01233468899999999776665 478999998875431 1
Q ss_pred -----eEecccccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCce--eEeecCCCCCCCCCceeeEEEecCCCCCeEE
Q 010324 343 -----KEFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWDLKSTDC--LQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 414 (513)
Q Consensus 343 -----~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 414 (513)
.........+.+++|+|+|+++++++ .++.|.+||+.++.. ...+... ..+......++|+|++ .+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~---~~~~~~~~~i~~spdg-~~l~ 274 (361)
T 3scy_A 199 KGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAAD---TVNAQGSGDIHLSPDG-KYLY 274 (361)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESC---SSCCCCEEEEEECTTS-SEEE
T ss_pred cccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecC---CCCCCCcccEEECCCC-CEEE
Confidence 11122345678999999999888777 689999999987653 2222211 1233456899999998 5554
Q ss_pred E-EcC-CCcEEEEEcc--CeEEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEE--ECCCceeeEee-ecccCC
Q 010324 415 V-CNK-TSSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCF--SHQSGKLEHLM-KVHEKD 486 (513)
Q Consensus 415 ~-~~~-~~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw--d~~~~~~~~~~-~~h~~~ 486 (513)
+ ... ++.|.+|+++ ............ ...+..++|+|+|++|++++ .++.|.+| |..++++.... ..+...
T Consensus 275 v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~ 353 (361)
T 3scy_A 275 ASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDK 353 (361)
T ss_dssp EEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSS
T ss_pred EECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCC
Confidence 4 445 5899999995 222222221111 34567899999999998888 67899996 55577765544 235567
Q ss_pred eEEEEEc
Q 010324 487 VIGVTHH 493 (513)
Q Consensus 487 v~~~~~~ 493 (513)
+.|+.|.
T Consensus 354 p~~v~~~ 360 (361)
T 3scy_A 354 PVCLKFV 360 (361)
T ss_dssp EEEEEEE
T ss_pred CeEEEEc
Confidence 8999885
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=6.3e-21 Score=185.10 Aligned_cols=216 Identities=14% Similarity=0.081 Sum_probs=152.1
Q ss_pred ccccCceeEEEECCCCCEEE----EEecCCeEEEEEeccccccc---cccccccccccccCCccEEEEEEcCC-CCEEEE
Q 010324 210 FGTKSHAECARFSPDGQFLV----SCSFDGFIEVVWDYLSGKLK---KDLQYQADETFMMHDETVLCIEFSRD-SEMLAS 281 (513)
Q Consensus 210 ~~h~~~v~~~~~s~~g~~la----~g~~dg~i~~iwd~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s 281 (513)
..|...|.+++|+|+|++|| +|+.|+.|+ +||+.++... ..........+.+|...|.+++|+|+ +.+|++
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~-iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIA-FFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEE-EEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEE-EEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEE
Confidence 35778899999999999999 788999997 9998765110 00001112355679999999999997 889999
Q ss_pred EeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccc-------ccceeE
Q 010324 282 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH-------SSYVND 354 (513)
Q Consensus 282 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~ 354 (513)
++.||+|++||++++....... .|...|.+++|+|+|++|++|+.||.|++||++ ++....+..+ ...|.+
T Consensus 168 ~s~Dg~v~iwD~~~~~~~~~~~-~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~ 245 (434)
T 2oit_A 168 CLADGSIAVLQVTETVKVCATL-PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLD 245 (434)
T ss_dssp EETTSCEEEEEESSSEEEEEEE-CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEE
T ss_pred EECCCeEEEEEcCCCcceeecc-CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEE
Confidence 9999999999999987665554 688899999999999999999999999999997 5555555433 237999
Q ss_pred EEEccCCCEEEEE-eCCC------cEEEEeCCCCce-----eEeecCC-CCCCCCCceeeEEEecCCCCCeEEEEcCCCc
Q 010324 355 AIFTNDGSRVVTA-SSDC------TVKVWDLKSTDC-----LQTFKPP-PPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 421 (513)
Q Consensus 355 ~~~~~~~~~l~~~-~~dg------~i~iwd~~~~~~-----~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 421 (513)
++|++++.++++. +.+| .+++|++++... ...+... ....+...+...+...++..-.+++.+..+.
T Consensus 246 v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~d 325 (434)
T 2oit_A 246 VLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTE 325 (434)
T ss_dssp EEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSB
T ss_pred EEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCc
Confidence 9999988776553 3443 389999986531 1111111 1011122222234444555344555555666
Q ss_pred EEEEEcc
Q 010324 422 IYIMTLQ 428 (513)
Q Consensus 422 i~i~d~~ 428 (513)
|.++...
T Consensus 326 v~vl~~~ 332 (434)
T 2oit_A 326 VSILARQ 332 (434)
T ss_dssp CEEEEEC
T ss_pred eeEEEec
Confidence 7666654
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=2.5e-21 Score=186.27 Aligned_cols=277 Identities=13% Similarity=0.074 Sum_probs=189.4
Q ss_pred EEECCCCCEEEEEec-CCe--EEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010324 219 ARFSPDGQFLVSCSF-DGF--IEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS 295 (513)
Q Consensus 219 ~~~s~~g~~la~g~~-dg~--i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~ 295 (513)
.+|||||++||+++. +|. + .+||+.+++..... .++...+..++|+|||+.|+.++.++.|++||+.+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l-~~~d~~~g~~~~lt--------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNY-YLLDLNTQVATQLT--------EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT 111 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEE-EEEETTTCEEEECC--------CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred ccCCCCCCEEEEEEcCCCCceE-EEEeCCCCceEEee--------eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 789999999999887 663 7 37888877654322 22444555678999999999999999999999999
Q ss_pred cceeeecccccccCeEEEE--EccCCCEEEEe----------------------eCCCcEEEEecCCCceeeEecccccc
Q 010324 296 GQCLRRLERAHSEGVTSLV--FSRDGSQILST----------------------SFDSTARIHGLKSGKLLKEFRGHSSY 351 (513)
Q Consensus 296 ~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------------~~dg~i~i~d~~~~~~~~~~~~~~~~ 351 (513)
++...... .+...+.... ++|++..++.. ..++.|.+||+.+++.. .+..+...
T Consensus 112 g~~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~ 189 (388)
T 3pe7_A 112 LEENVVYQ-VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQW 189 (388)
T ss_dssp CCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSC
T ss_pred Ccceeeee-chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCcc
Confidence 88765554 3444443343 48999988742 24468999999888654 44446667
Q ss_pred eeEEEEcc-CCCEEEEEeCC------CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC----
Q 010324 352 VNDAIFTN-DGSRVVTASSD------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS---- 420 (513)
Q Consensus 352 v~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~---- 420 (513)
+..+.|+| +|+.++.+..+ ..|.++|...+... .+... .....+....|+|++..+++++..++
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (388)
T 3pe7_A 190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTH----AEGESCTHEFWVPDGSALVYVSYLKGSPDR 264 (388)
T ss_dssp EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCC----CTTEEEEEEEECTTSSCEEEEEEETTCCCE
T ss_pred ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeC----CCCcccccceECCCCCEEEEEecCCCCCcc
Confidence 89999999 99998887763 37888887765432 22211 11135778899999965655554433
Q ss_pred cEEEEEccCeEEEEeecCccCCCc---EEEEEECCCCCEEEEE---------ecCceEEEEECCCceeeEeeecccC---
Q 010324 421 SIYIMTLQGQVVKSFSSGKREGGD---FVAACVSPKGEWIYCV---------GEDRNLYCFSHQSGKLEHLMKVHEK--- 485 (513)
Q Consensus 421 ~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~s~~~~~l~~g---------~~dg~i~iwd~~~~~~~~~~~~h~~--- 485 (513)
.|++||+.+.....+......... ....+|+|||+.|+.. ..+..|++||+.+++.. .+..|..
T Consensus 265 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~ 343 (388)
T 3pe7_A 265 FIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWK 343 (388)
T ss_dssp EEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCC
T ss_pred eEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCccc
Confidence 399999985443333221110000 0113689999988754 45678999999988764 4444554
Q ss_pred --------CeEEEEEcCCCCEEEEEE-CCCeEEecc
Q 010324 486 --------DVIGVTHHPHRNLLATYG-EDCTMKLWK 512 (513)
Q Consensus 486 --------~v~~~~~~p~~~~l~s~~-~dg~i~iWd 512 (513)
.+.+++|+|||+.|+.++ .+|...||.
T Consensus 344 ~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 344 VFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred ccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 578899999999887666 577777774
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=1.9e-20 Score=178.21 Aligned_cols=269 Identities=9% Similarity=0.128 Sum_probs=182.2
Q ss_pred CCEEEEEe----cCCeEEEEEecc--ccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC----CcEEEEEcC
Q 010324 225 GQFLVSCS----FDGFIEVVWDYL--SGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD----GKIKVWRIR 294 (513)
Q Consensus 225 g~~la~g~----~dg~i~~iwd~~--~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d----g~i~vwd~~ 294 (513)
..++++|+ .++.|. +|+++ +++..... .. +...+..++|+|+|++|++++.+ +.|.+|++.
T Consensus 13 ~~~~~vg~y~~~~~~~i~-~~~~d~~~g~~~~~~------~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~ 83 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIY-TFRFNEETGESLPLS------DA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFD 83 (361)
T ss_dssp EEEEEEEECCSSSCCEEE-EEEEETTTCCEEEEE------EE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEE
T ss_pred ceEEEEEeccCCCCCCEE-EEEEeCCCCCEEEee------cc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEe
Confidence 34555664 456785 88775 34432211 11 56677889999999999999876 799999987
Q ss_pred C--cce--eeecccccccCeEEEEEccCCCEEEEee-CCCcEEEEecCCCceeeEe------cc--------cccceeEE
Q 010324 295 S--GQC--LRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKSGKLLKEF------RG--------HSSYVNDA 355 (513)
Q Consensus 295 ~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~------~~--------~~~~v~~~ 355 (513)
. ++. +.... .+......+++ +++++++++ .++.|.+|++.....+... .+ +...+.++
T Consensus 84 ~~~g~~~~~~~~~-~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (361)
T 3scy_A 84 KEKGTLHLLNTQK-TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCV 160 (361)
T ss_dssp TTTTEEEEEEEEE-CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEE
T ss_pred CCCCcEEEeeEec-cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEE
Confidence 5 432 22222 24456777888 788887776 5789999999754332211 11 12335789
Q ss_pred EEccCCCEEEEEe-CCCcEEEEeCCCCce------e------EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcE
Q 010324 356 IFTNDGSRVVTAS-SDCTVKVWDLKSTDC------L------QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 422 (513)
Q Consensus 356 ~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 422 (513)
+|+|+|+++++++ .++.|.+|++..... + ..... .....+..++|+|++..+++++..++.|
T Consensus 161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~~~~v 235 (361)
T 3scy_A 161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-----APGSGPRHLIFNSDGKFAYLINEIGGTV 235 (361)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-----CTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec-----CCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence 9999999776665 478999998875431 1 11111 1234567899999984444555578999
Q ss_pred EEEEccCeEE---EEeecCccCCCcEEEEEECCCCCEEEEEec--CceEEEEECC--Cce--eeEeeecccCCeEEEEEc
Q 010324 423 YIMTLQGQVV---KSFSSGKREGGDFVAACVSPKGEWIYCVGE--DRNLYCFSHQ--SGK--LEHLMKVHEKDVIGVTHH 493 (513)
Q Consensus 423 ~i~d~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--dg~i~iwd~~--~~~--~~~~~~~h~~~v~~~~~~ 493 (513)
.+|++....+ ..+.....+......++|+|+|++|+++.. ++.|.+|++. +++ .+..+.. ...+.+++|+
T Consensus 236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s 314 (361)
T 3scy_A 236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT 314 (361)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence 9999974333 223332333345679999999999977775 4899999985 454 3444444 4578899999
Q ss_pred CCCCEEEEEE-CCCeEEec
Q 010324 494 PHRNLLATYG-EDCTMKLW 511 (513)
Q Consensus 494 p~~~~l~s~~-~dg~i~iW 511 (513)
|++++|++++ .++.|.+|
T Consensus 315 pdg~~l~~~~~~~~~v~v~ 333 (361)
T 3scy_A 315 PNGKYLLVACRDTNVIQIF 333 (361)
T ss_dssp TTSCEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEECCCCCEEEE
Confidence 9999888887 67899996
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=208.14 Aligned_cols=279 Identities=11% Similarity=0.100 Sum_probs=192.5
Q ss_pred EEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCc---cEEEEEEcCCCCEEEEEeC---------C
Q 010324 218 CARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDE---TVLCIEFSRDSEMLASGSQ---------D 285 (513)
Q Consensus 218 ~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~l~s~~~---------d 285 (513)
+++|+|+|++++++ .|+.|+ +||..+++....+. +|.. .+.+++|||||++|++++. +
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~-~~~~~~g~~~~~~~--------~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~ 89 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIV-LYNIETGQSYTILS--------NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT 89 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEE-EEESSSCCEEEEEC--------HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred ccEECCCCeEEEEc-CCCCEE-EEEcCCCcEEEEEc--------cccccccceeeEEECCCCCeEEEEecCceeEEeecc
Confidence 67999999665554 699996 99999887543332 1222 4889999999999999876 6
Q ss_pred CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe-cccccc-------------
Q 010324 286 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF-RGHSSY------------- 351 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~------------- 351 (513)
+.|++||+.+++.+.... ....+..++|+|||+.|+++. ++.|++||+.+++..... .++...
T Consensus 90 ~~i~~~d~~~g~~~~~~~--l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee 166 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRGNE--LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEE 166 (719)
T ss_dssp EEEEEEETTTTEECCSSC--CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHH
T ss_pred eEEEEEECCCCcccccee--cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeee
Confidence 899999999987632111 124688899999999999986 789999999888765432 222221
Q ss_pred ----eeEEEEccCCCEEEEEeCCC----------------------------------cEEEEeCCCCcee--EeecCCC
Q 010324 352 ----VNDAIFTNDGSRVVTASSDC----------------------------------TVKVWDLKSTDCL--QTFKPPP 391 (513)
Q Consensus 352 ----v~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~--~~~~~~~ 391 (513)
..+++|+|||++|++++.|. .|++||+.+++.. ..+..+.
T Consensus 167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 246 (719)
T 1z68_A 167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA 246 (719)
T ss_dssp TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence 25899999999999987652 7889999987643 1222111
Q ss_pred CCCCCCceeeEEEecCCCCCeEEEEcCC----CcEEEEE----ccCeEEEEeec--CccCCCcEE-----EEEECCCCCE
Q 010324 392 PLRGGDASVNSVHLFPKNPDHIVVCNKT----SSIYIMT----LQGQVVKSFSS--GKREGGDFV-----AACVSPKGEW 456 (513)
Q Consensus 392 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~----~~i~i~d----~~~~~~~~~~~--~~~~~~~~~-----~~~~s~~~~~ 456 (513)
.+.++...+.+++|+|++ .++++.... ..|++|| ..+.....+.. ...+...+. .++|+|||+.
T Consensus 247 ~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 325 (719)
T 1z68_A 247 MIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS 325 (719)
T ss_dssp HHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred cCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCe
Confidence 122467789999999995 666664322 3488899 66443332221 011223333 6789999996
Q ss_pred EEE--EecCc--eEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECC-----CeEEecc
Q 010324 457 IYC--VGEDR--NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED-----CTMKLWK 512 (513)
Q Consensus 457 l~~--g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d-----g~i~iWd 512 (513)
++. +..+| .|++||+.+++ ...+..+...+..+.++ +++.|+..+.+ +.+++|.
T Consensus 326 l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 326 YYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp EEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred EEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 654 33444 68888887776 34555566678887777 77777766654 7888885
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=2.2e-21 Score=202.20 Aligned_cols=301 Identities=10% Similarity=0.030 Sum_probs=199.3
Q ss_pred ccccccCcccceeeeeccccC---ceeEEEECCCCCEEEEEec---------CCeEEEEEeccccccccccccccccccc
Q 010324 194 QDVEDMYPTTLSHTIKFGTKS---HAECARFSPDGQFLVSCSF---------DGFIEVVWDYLSGKLKKDLQYQADETFM 261 (513)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~g~~la~g~~---------dg~i~~iwd~~~~~~~~~~~~~~~~~~~ 261 (513)
..+++.........+. +|.. .+.+++|||||++||+++. ++.+. +||+.+++......
T Consensus 38 i~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~-~~d~~~g~~~~~~~-------- 107 (719)
T 1z68_A 38 IVLYNIETGQSYTILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY-IYDLSNGEFVRGNE-------- 107 (719)
T ss_dssp EEEEESSSCCEEEEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE-EEETTTTEECCSSC--------
T ss_pred EEEEEcCCCcEEEEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE-EEECCCCcccccee--------
Confidence 3445555544443332 3433 3899999999999999876 78996 99999887631111
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCe-----------------EEEEEccCCCEEEE
Q 010324 262 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGV-----------------TSLVFSRDGSQILS 324 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~l~~ 324 (513)
....+.+++|||||+.|+++. ++.|++||+.+++.......++...+ .+++|+|||++|++
T Consensus 108 -l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~ 185 (719)
T 1z68_A 108 -LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY 185 (719)
T ss_dssp -CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred -cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence 124588899999999999986 78999999998876544332333322 48999999999999
Q ss_pred eeCCC----------------------------------cEEEEecCCCcee--------eEecccccceeEEEEccCCC
Q 010324 325 TSFDS----------------------------------TARIHGLKSGKLL--------KEFRGHSSYVNDAIFTNDGS 362 (513)
Q Consensus 325 ~~~dg----------------------------------~i~i~d~~~~~~~--------~~~~~~~~~v~~~~~~~~~~ 362 (513)
++.|. .|++||+.+++.. ..+.+|...+.+++|+||++
T Consensus 186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~ 265 (719)
T 1z68_A 186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER 265 (719)
T ss_dssp EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE
T ss_pred EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe
Confidence 87652 7889999887643 12345777899999999987
Q ss_pred EEEEEeCC----CcEEEEe----CCCCceeEeecCCCCCCCCCceee-----EEEecCCCCCeEE-EEcCCC--cEEEEE
Q 010324 363 RVVTASSD----CTVKVWD----LKSTDCLQTFKPPPPLRGGDASVN-----SVHLFPKNPDHIV-VCNKTS--SIYIMT 426 (513)
Q Consensus 363 ~l~~~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~l~-~~~~~~--~i~i~d 426 (513)
.+++.... ..|.+|| +.+++....+... ...+...+. .+.|+|++..+++ ++..++ .|++|+
T Consensus 266 ~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~ 343 (719)
T 1z68_A 266 VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI--EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIK 343 (719)
T ss_dssp EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE--EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEES
T ss_pred EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecc--cccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEE
Confidence 77664432 2488899 7777654433100 002333444 7789999865555 344555 566677
Q ss_pred ccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC-----ceEEEEECCC--cee-eEeee----cccCCeEEEEEcC
Q 010324 427 LQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-----RNLYCFSHQS--GKL-EHLMK----VHEKDVIGVTHHP 494 (513)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~--~~~-~~~~~----~h~~~v~~~~~~p 494 (513)
+.+.....+.. ....+..+.++ +++.|+..+.+ +...+|.+.. +.. ...+. +|...+..+.|+|
T Consensus 344 ~~~~~~~~lt~---~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~ 419 (719)
T 1z68_A 344 DTVENAIQITS---GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSD 419 (719)
T ss_dssp SCSTTCEECSC---SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECG
T ss_pred CCCCceEeccc---CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECC
Confidence 76544444432 23346666666 78877777654 7788887653 421 22332 2566788999999
Q ss_pred CCCEEEE-EECC--CeEEecc
Q 010324 495 HRNLLAT-YGED--CTMKLWK 512 (513)
Q Consensus 495 ~~~~l~s-~~~d--g~i~iWd 512 (513)
+++.++. ++.+ ..+.+||
T Consensus 420 dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 420 YAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp GGSSEEEEECCBSSCEEEEEC
T ss_pred CCCEEEEEcCCCCCCeEEEEE
Confidence 9887764 4333 3566675
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=5e-20 Score=175.37 Aligned_cols=244 Identities=11% Similarity=0.193 Sum_probs=170.6
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEEcC-CcceeeecccccccCeEEEEEccCCCE--EEEee-------------C
Q 010324 264 DETVLCIEFSRDSEMLASGSQDGKIKVWRIR-SGQCLRRLERAHSEGVTSLVFSRDGSQ--ILSTS-------------F 327 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~-------------~ 327 (513)
...+..++|+|+|++|++++.+ .|.+|++. +++............+.+++|+|+|++ +++++ .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 3467889999999999999888 99999997 776544332111123556899999994 44553 6
Q ss_pred CCcEEEEecC-CCceeeEec----ccccceeEEEEccCCCEEEEEeC-CCcEEEEeCC-CCceeE--eecCCCCCCCCCc
Q 010324 328 DSTARIHGLK-SGKLLKEFR----GHSSYVNDAIFTNDGSRVVTASS-DCTVKVWDLK-STDCLQ--TFKPPPPLRGGDA 398 (513)
Q Consensus 328 dg~i~i~d~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~-~~~~~~--~~~~~~~~~~~~~ 398 (513)
+|.+.+|++. +++....+. .+...+.+++|+|+|+++++++. ++.|++||+. +++... .+..+ .+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~----~~g~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP----DPGD 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS----STTC
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC----CCCC
Confidence 8999999997 465544433 24567899999999998887764 6799999998 666432 22211 1234
Q ss_pred eeeEEEecCCCCCeEEEEcCCCcEEEEEcc---CeEE---EEeecCcc----CCC------cEEEEE-ECCCCCEEEEEe
Q 010324 399 SVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ---GQVV---KSFSSGKR----EGG------DFVAAC-VSPKGEWIYCVG 461 (513)
Q Consensus 399 ~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~---~~~~---~~~~~~~~----~~~------~~~~~~-~s~~~~~l~~g~ 461 (513)
.+..++|+|++..++++...++.+.+|+++ +... ..+..... +.. .+..++ |+|||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 688999999984444444567899999875 3322 12222111 111 477899 999999998776
Q ss_pred cC-c-----eEEEEECC-CceeeE---eeecccCCeEEEEEcC---CCCEEEEEEC-CCeEEecc
Q 010324 462 ED-R-----NLYCFSHQ-SGKLEH---LMKVHEKDVIGVTHHP---HRNLLATYGE-DCTMKLWK 512 (513)
Q Consensus 462 ~d-g-----~i~iwd~~-~~~~~~---~~~~h~~~v~~~~~~p---~~~~l~s~~~-dg~i~iWd 512 (513)
.+ + .|.+|++. +++... ....+...+..++|+| ++++|++++. +++|.+|+
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence 43 2 89999996 666543 2333555677899999 8999999886 48999996
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=6.9e-21 Score=193.30 Aligned_cols=233 Identities=15% Similarity=0.157 Sum_probs=173.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeC---CCcEEEEecCC
Q 010324 263 HDETVLCIEFSRDSEMLASGSQ-DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF---DSTARIHGLKS 338 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~ 338 (513)
+..+|.+++|+|||+.||+++. ||+++||++.+++. ..+...+...+..++|+|| +.+++++. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 3568999999999999999887 99999999966654 4444233368999999999 77777765 45556655433
Q ss_pred ---CceeeEecccccceeEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEE
Q 010324 339 ---GKLLKEFRGHSSYVNDAIFTNDGSR-VVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 414 (513)
Q Consensus 339 ---~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 414 (513)
+... .+.... .+...+|+|+|+. +++++.++.+.+||+.+++....... .. .+++|+|++ ..++
T Consensus 98 ~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-------~~--~~~~~spDG-~~la 165 (582)
T 3o4h_A 98 SRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-------PG--FGFVSDIRG-DLIA 165 (582)
T ss_dssp TSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-------SS--CEEEEEEET-TEEE
T ss_pred cCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-------CC--ceEEECCCC-CEEE
Confidence 2222 333222 2446688888863 34444555566999998875544321 11 788999998 7777
Q ss_pred EEcCC----CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc--eEEEEECCCceeeEeeecccCCeE
Q 010324 415 VCNKT----SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR--NLYCFSHQSGKLEHLMKVHEKDVI 488 (513)
Q Consensus 415 ~~~~~----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~ 488 (513)
+++.+ +.|++||+.+.....+.. +...+..++|||||+.|+++..+| .|++||+.+++.. .+..|...+.
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~~~~l~~---~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~ 241 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGGLRVFDS---GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFS 241 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCCCEEECC---SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHH
T ss_pred EEEEcCCCCeEEEEEcCCCCCceEeec---CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChh
Confidence 66655 779999988655555543 345678999999999999888888 8999999999887 7777877777
Q ss_pred EEE--------EcCCCCEEEEEECCCeEEeccC
Q 010324 489 GVT--------HHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 489 ~~~--------~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.++ |+|||.++++++.||++++|+.
T Consensus 242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 777 9999999999999999999973
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=3e-19 Score=169.98 Aligned_cols=253 Identities=11% Similarity=0.141 Sum_probs=170.4
Q ss_pred ccCceeEEEECCCCCEEEEEecCCeEEEEEecc-ccccccccccccccccccCCccEEEEEEcCCCCE--EEEEe-----
Q 010324 212 TKSHAECARFSPDGQFLVSCSFDGFIEVVWDYL-SGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM--LASGS----- 283 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~--l~s~~----- 283 (513)
....+..++|+|+|++|++++.+ .+. +|++. +++....... ..+ +.+.+++|+|+|++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~-~~~~~~~g~~~~~~~~------~~~-g~~~~~~~spdg~~l~~~~~~~~~~~ 108 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWS-SFAVKSPTEIVHEASH------PIG-GHPRANDADTNTRAIFLLAAKQPPYA 108 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEE-EEEEEETTEEEEEEEE------ECC-SSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEE-EEEECCCCCEEEeeEe------ecC-CCCccEEECCCCCEEEEEEecCCcce
Confidence 44568899999999999999888 896 99997 6654322111 001 12445899999994 44553
Q ss_pred --------CCCcEEEEEcC-Ccceeeeccc---ccccCeEEEEEccCCCEEEEeeC-CCcEEEEecC-CCcee--eEec-
Q 010324 284 --------QDGKIKVWRIR-SGQCLRRLER---AHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLK-SGKLL--KEFR- 346 (513)
Q Consensus 284 --------~dg~i~vwd~~-~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~-~~~~~--~~~~- 346 (513)
.+|.+.+|++. +++....+.. .+...+.+++|+|||+++++++. ++.|.+||+. +++.. ..+.
T Consensus 109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 188 (365)
T 1jof_A 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA 188 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred eccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEec
Confidence 68999999997 4655433321 24567999999999998887764 6799999998 67643 2333
Q ss_pred -ccccceeEEEEccCCCEEEEEeC-CCcEEEEeCC--CCceeE---eecC-CCCCCCCCc------eeeEEE-ecCCCCC
Q 010324 347 -GHSSYVNDAIFTNDGSRVVTASS-DCTVKVWDLK--STDCLQ---TFKP-PPPLRGGDA------SVNSVH-LFPKNPD 411 (513)
Q Consensus 347 -~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~~~---~~~~-~~~~~~~~~------~v~~~~-~~~~~~~ 411 (513)
.+...+..++|+|+|+++++++. ++.|.+|++. +++... .+.. +....++.. .+..++ |+|++ +
T Consensus 189 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~ 267 (365)
T 1jof_A 189 PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-K 267 (365)
T ss_dssp SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-S
T ss_pred CCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-C
Confidence 23556899999999999888775 6899999765 455321 2221 111112222 578999 99998 5
Q ss_pred eEEEEcC-CC-----cEEEEEcc-CeEEEEeec-CccCCCcEEEEEECC---CCCEEEEEec-CceEEEEECCCc
Q 010324 412 HIVVCNK-TS-----SIYIMTLQ-GQVVKSFSS-GKREGGDFVAACVSP---KGEWIYCVGE-DRNLYCFSHQSG 474 (513)
Q Consensus 412 ~l~~~~~-~~-----~i~i~d~~-~~~~~~~~~-~~~~~~~~~~~~~s~---~~~~l~~g~~-dg~i~iwd~~~~ 474 (513)
.+++++. .+ .|.+|+++ ...+..... .......+..++|+| +|++|++++. ++.|.+|++...
T Consensus 268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 5555543 33 89999985 222322110 111122344678999 8999999986 489999998766
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=8.7e-20 Score=190.19 Aligned_cols=277 Identities=13% Similarity=0.130 Sum_probs=181.6
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC--------
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD-------- 285 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-------- 285 (513)
....+++|+|||++++++ ||.|+ +||+.+++....+... .+..+......++|||||++|++++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNIL-VFNAEYGNSSVFLENS---TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEE-EEETTTCCEEEEECTT---TTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred ccccccEECCCCcEEEEc--CCcEE-EEECCCCceEEEEech---hhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence 345679999999999987 99996 9999988754332211 111122234568999999999999876
Q ss_pred -CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeE-ecccccc------------
Q 010324 286 -GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE-FRGHSSY------------ 351 (513)
Q Consensus 286 -g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~------------ 351 (513)
+.+.+||+.+++... +. .+...+...+|||||+.|+.+. ++.|++|++.+++.... ..++...
T Consensus 91 ~~~~~~~d~~~~~~~~-l~-~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 91 TASYDIYDLNKRQLIT-EE-RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEEEEEETTTTEECC-SS-CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred ceEEEEEECCCCcEEE-cc-cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 567799999988654 43 5677899999999999999885 78999999988765432 1222221
Q ss_pred -----eeEEEEccCCCEEEEEeCCC------------------------------------cEEEEeCCC---Cc--eeE
Q 010324 352 -----VNDAIFTNDGSRVVTASSDC------------------------------------TVKVWDLKS---TD--CLQ 385 (513)
Q Consensus 352 -----v~~~~~~~~~~~l~~~~~dg------------------------------------~i~iwd~~~---~~--~~~ 385 (513)
...+.|||||++|+.++.|. .|++||+.+ ++ ...
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 23589999999999875322 478888887 63 222
Q ss_pred eecCCCCCCCCCceeeEEEecCCCCCeEEEE-cC---CCcEEEEEccCeE-------EEEeecCccCCCc-----EEEEE
Q 010324 386 TFKPPPPLRGGDASVNSVHLFPKNPDHIVVC-NK---TSSIYIMTLQGQV-------VKSFSSGKREGGD-----FVAAC 449 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~---~~~i~i~d~~~~~-------~~~~~~~~~~~~~-----~~~~~ 449 (513)
.+..+....++...+..++|+|++ ..++.. .. +..|++||+.+.. ...+.. ..+... .....
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~-~~~~~~v~~~~~~~p~ 325 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE-MSTTGWVGRFRPSEPH 325 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE-ECSSSCSSSSSCCCCE
T ss_pred EecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee-ccCCceEccCcCCCce
Confidence 332211111356788999999998 444443 22 3469999987432 111100 111222 23578
Q ss_pred ECCCCCEEE-EEec-C--ceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEE
Q 010324 450 VSPKGEWIY-CVGE-D--RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 450 ~s~~~~~l~-~g~~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 503 (513)
|+|||+.++ ..+. + ..|++||..+++......+ ...|..+.+ ++++.|+..+
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~~~-~d~~~i~f~~ 381 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWEVIGIEA-LTSDYLYYIS 381 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSCEEEEEE-ECSSEEEEEE
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC-CEEEEEEEE-EeCCEEEEEE
Confidence 999999877 6653 3 4699999987776654443 445655542 3455554443
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.84 E-value=9.9e-19 Score=163.76 Aligned_cols=247 Identities=13% Similarity=0.097 Sum_probs=189.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCC------------------------CcEEEEEcCCcceeeecccccccCeEEEEEccCC
Q 010324 264 DETVLCIEFSRDSEMLASGSQD------------------------GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDG 319 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 319 (513)
-+.+.+++++|+|+++++...+ +.|.+||..+++.+..+...+-..+..++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999988888776 4799999988988776654455678999999999
Q ss_pred CEEEEeeCCCcEEEEecCCCc-eeeEe---------cccccceeEEEEcc-CCCEEEEEe-CCCcEEEEeCCCCceeEee
Q 010324 320 SQILSTSFDSTARIHGLKSGK-LLKEF---------RGHSSYVNDAIFTN-DGSRVVTAS-SDCTVKVWDLKSTDCLQTF 387 (513)
Q Consensus 320 ~~l~~~~~dg~i~i~d~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 387 (513)
+.+++...++.|++||..... .+..+ ..+...+..++++| ++..+++.+ .++.|++|| .++..+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999985432 44444 23344688999999 788888876 689999999 567766665
Q ss_pred cCCCCC----CCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEE---
Q 010324 388 KPPPPL----RGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYC--- 459 (513)
Q Consensus 388 ~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--- 459 (513)
...... .+.-..+..+++.|++..++++...++.|++|+.. +..+..+... .....+..++++| +..+.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~p-g~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIP-GFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEET-TEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecC-CEEEEeCCC
Confidence 422110 11223478999999865888888899999999998 7777766543 2345677899999 333333
Q ss_pred ----EecCceEEEEECCCceeeEeee---cccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 460 ----VGEDRNLYCFSHQSGKLEHLMK---VHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 460 ----g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
...++.|++|+..+++.+..+. ++...+.+++++|+|.++++...+++|++|++
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 2345589999999999988873 56677999999999988888889999999974
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.84 E-value=7.1e-19 Score=166.61 Aligned_cols=272 Identities=11% Similarity=0.141 Sum_probs=187.3
Q ss_pred CCCEEEEEe------cCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC----------CCc
Q 010324 224 DGQFLVSCS------FDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ----------DGK 287 (513)
Q Consensus 224 ~g~~la~g~------~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----------dg~ 287 (513)
+++++++.. .|+.|. +||..+++....+. .+..+ .++|+|||+++++++. ++.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~-v~D~~t~~~~~~i~--------~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~ 82 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVH-VYDYTNGKFLGMVP--------TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDV 82 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEE-EEETTTCCEEEEEE--------CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEE
T ss_pred CCCEEEEECCCCCccccCeEE-EEECCCCeEEEEec--------CCCCC--ceEECCCCCEEEEEEecccccccCCCCCE
Confidence 455555543 477995 99998887664433 23444 8999999999999863 568
Q ss_pred EEEEEcCCcceeeecccc-----cccCeEEEEEccCCCEEEEeeC--CCcEEEEecCCCceeeE-ecccccceeEEEEcc
Q 010324 288 IKVWRIRSGQCLRRLERA-----HSEGVTSLVFSRDGSQILSTSF--DSTARIHGLKSGKLLKE-FRGHSSYVNDAIFTN 359 (513)
Q Consensus 288 i~vwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~ 359 (513)
|.+||..+++.+..+... +......++++|||++|+++.. ++.|.+||+.+++.+.. +.... ...+.+.|
T Consensus 83 v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p 160 (361)
T 2oiz_A 83 VEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQP 160 (361)
T ss_dssp EEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECT
T ss_pred EEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcC
Confidence 999999998888776522 2345678999999999998874 58999999999988877 55322 22356777
Q ss_pred CC-CEEEEEeCCCcEEEEeCCC-CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeE---EEE
Q 010324 360 DG-SRVVTASSDCTVKVWDLKS-TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV---VKS 434 (513)
Q Consensus 360 ~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~ 434 (513)
++ ..+++.+.||.+.+|+... ++................+ ..+...+++ ..++..+.++.++++|+.... ...
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~ 238 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGP 238 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEE
T ss_pred CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCceeccc
Confidence 65 6788889999999999865 4443221110000111111 112223444 455666678899999986332 122
Q ss_pred eecCc----cCC---CcEEEEEECCCCCEEEEEec-----------CceEEEEECCCceeeEeeecccCCeEEEEEcCCC
Q 010324 435 FSSGK----REG---GDFVAACVSPKGEWIYCVGE-----------DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR 496 (513)
Q Consensus 435 ~~~~~----~~~---~~~~~~~~s~~~~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~ 496 (513)
+.... ... .....++++|+++.++++.. .+.|.+||..+++.+..+..+. +.+++|+|+|
T Consensus 239 ~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg 316 (361)
T 2oiz_A 239 WSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQR 316 (361)
T ss_dssp EESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTT
T ss_pred ccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCC
Confidence 11110 000 01112688999998887654 3589999999999999998877 9999999999
Q ss_pred CEEEEEECCCeEEeccC
Q 010324 497 NLLATYGEDCTMKLWKP 513 (513)
Q Consensus 497 ~~l~s~~~dg~i~iWdp 513 (513)
++|++++. ++|.+||+
T Consensus 317 ~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 317 NLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp TEEEEECS-SCEEEEEC
T ss_pred CEEEEeCC-CeEEEEEC
Confidence 99998886 99999985
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=1.9e-19 Score=173.41 Aligned_cols=275 Identities=10% Similarity=0.021 Sum_probs=184.2
Q ss_pred ceeEEEECCCCCEEEEEecC---CeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 215 HAECARFSPDGQFLVSCSFD---GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g~~d---g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
.+.+++|||||++|+..... ..+ ++||..+++...... ++......+.|+|||++|+.++.++.|++|
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l-~~~d~~~~~~~~l~~--------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~ 107 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNY-YLLNLETQQAVQLTE--------GKGDNTFGGFISTDERAFFYVKNELNLMKV 107 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEE-EEEETTTTEEEECCC--------SSCBCTTTCEECTTSSEEEEEETTTEEEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceE-EEEECCCCcEEEeec--------CCCCccccceECCCCCEEEEEEcCCcEEEE
Confidence 37788999999998877543 367 488888776432211 122222347899999999999999999999
Q ss_pred EcCCcceeeecccccccCeEE-------------------EEEccCCCEEEEe-----eCCCcEEEEecCCCceeeEecc
Q 010324 292 RIRSGQCLRRLERAHSEGVTS-------------------LVFSRDGSQILST-----SFDSTARIHGLKSGKLLKEFRG 347 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~ 347 (513)
|+.+++...... .+...... +.|+|+++.++.+ ..+..|++||+.+++..... .
T Consensus 108 d~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~ 185 (396)
T 3c5m_A 108 DLETLEEQVIYT-VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-Q 185 (396)
T ss_dssp ETTTCCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-E
T ss_pred ECCCCCcEEEEe-cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-c
Confidence 998887554433 22222222 3467777766654 35678999999888765444 4
Q ss_pred cccceeEEEEcc-CCCEEEEEeCC------CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC-
Q 010324 348 HSSYVNDAIFTN-DGSRVVTASSD------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT- 419 (513)
Q Consensus 348 ~~~~v~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~- 419 (513)
+...+..+.|+| +++.++.++.+ ..|.+||+..+.... +... .....+..+.|+|++..+++++..+
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~----~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (396)
T 3c5m_A 186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEH----AEGESCTHEFWIPDGSAMAYVSYFKG 260 (396)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCC----CTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eecc----CCCccccceEECCCCCEEEEEecCCC
Confidence 566789999999 78877776653 368889987654322 2211 1134678899999985555554332
Q ss_pred ---CcEEEEEccCeEEEEeecCccCCCcEEEEEECC-CCCEEEEEe----------------cCceEEEEECCCceeeEe
Q 010324 420 ---SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSP-KGEWIYCVG----------------EDRNLYCFSHQSGKLEHL 479 (513)
Q Consensus 420 ---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~----------------~dg~i~iwd~~~~~~~~~ 479 (513)
+.|++||+.+.....+.... ... ..|+| +|+++++++ .++.|++||..+++.. .
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~ 334 (396)
T 3c5m_A 261 QTDRVIYKANPETLENEEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-K 334 (396)
T ss_dssp TCCEEEEEECTTTCCEEEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-E
T ss_pred CccceEEEEECCCCCeEEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-E
Confidence 34999999854444433222 122 88999 999888765 3478999999888754 3
Q ss_pred eecccC-----------CeEEEEEcCCCCEEEEEEC-CCeEEec
Q 010324 480 MKVHEK-----------DVIGVTHHPHRNLLATYGE-DCTMKLW 511 (513)
Q Consensus 480 ~~~h~~-----------~v~~~~~~p~~~~l~s~~~-dg~i~iW 511 (513)
+..+.. .+..++|+|+++.|+.++. ++...+|
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 335 LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence 444443 2567899999998887764 5666665
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=3e-18 Score=161.93 Aligned_cols=265 Identities=13% Similarity=0.085 Sum_probs=178.4
Q ss_pred cccccccccCcccceeeeeccccCceeEEEECCCCCEEE-EEecCCeEEEEEeccccccccccccccccccccCCccEEE
Q 010324 191 AMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLV-SCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLC 269 (513)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la-~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~ 269 (513)
.....+++....+....+..+....+..++|+|+|++++ ++..++.|. +||..+++....+...... ..+...+.+
T Consensus 20 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~-~~d~~t~~~~~~~~~~~~~--~~~~~~~~~ 96 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY-GIDLDTCKNTFHANLSSVP--GEVGRSMYS 96 (349)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE-EEETTTTEEEEEEESCCST--TEEEECSSC
T ss_pred CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEE-EEeCCCCcEEEEEEccccc--ccccccccc
Confidence 344556666666666777655434688999999998665 555789995 9999888765443321000 000234788
Q ss_pred EEEcCCCCEEEEEeCC------------CcEEEEEcCCcceeeecc-cccccCeEEEEEccCCCEEEEeeCCCcEEEEec
Q 010324 270 IEFSRDSEMLASGSQD------------GKIKVWRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 336 (513)
Q Consensus 270 l~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 336 (513)
++|+|+|+++++++.+ +.|.+||+.+++....+. ..+...+.+++|+|+|+ +++++ +.|.+||+
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~ 173 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDV 173 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECT
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeC
Confidence 9999999999998865 899999999865433221 12344688999999999 66654 34999999
Q ss_pred CCCceeeEeccccc------------------------ceeEEEEccCCCE-----------EEEEeCCCcEEEEeCCCC
Q 010324 337 KSGKLLKEFRGHSS------------------------YVNDAIFTNDGSR-----------VVTASSDCTVKVWDLKST 381 (513)
Q Consensus 337 ~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~-----------l~~~~~dg~i~iwd~~~~ 381 (513)
.+++.+..+..+.. ....+++++++.. +.....++.+.+|++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 251 (349)
T 1jmx_B 174 KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-- 251 (349)
T ss_dssp TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE--
T ss_pred CCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc--
Confidence 99988776653320 2344566654421 1122223444444331
Q ss_pred ceeEeecCCCCCCCCCceeeEEEecC-CCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEE
Q 010324 382 DCLQTFKPPPPLRGGDASVNSVHLFP-KNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYC 459 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 459 (513)
.....+..++++| ++ ..++++ ++.|.+||+. ++....+... ..+..++|+|+|++|++
T Consensus 252 -------------~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~ 311 (349)
T 1jmx_B 252 -------------DLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKLIKAANLD----HTYYCVAFDKKGDKLYL 311 (349)
T ss_dssp -------------ECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTEEEEEEECS----SCCCEEEECSSSSCEEE
T ss_pred -------------cCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCeEEEEEcCC----CCccceEECCCCCEEEE
Confidence 1334678899999 76 666666 8899999998 4444444432 23568999999999999
Q ss_pred EecCceEEEEECCCceeeEeeecc
Q 010324 460 VGEDRNLYCFSHQSGKLEHLMKVH 483 (513)
Q Consensus 460 g~~dg~i~iwd~~~~~~~~~~~~h 483 (513)
++.++.|++||..+++.+..+..+
T Consensus 312 ~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 312 GGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp ESBSSEEEEEETTTTEEEEEEECS
T ss_pred ecCCCeEEEEeccccceeeeeecC
Confidence 888999999999999988887655
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=2.6e-17 Score=151.01 Aligned_cols=241 Identities=12% Similarity=0.214 Sum_probs=182.3
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeccc-----ccccCeEEEEEc-cCCCEEEEeeC-CCcEEEE
Q 010324 262 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER-----AHSEGVTSLVFS-RDGSQILSTSF-DSTARIH 334 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~v~~~~~~-~~~~~l~~~~~-dg~i~i~ 334 (513)
++-..+.+++++|++.++++...++.|.+||.. ++.+..+.. .+...+..+++. +++..+++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 356779999999999988888889999999976 665555531 233578999994 67765555533 8899999
Q ss_pred ecCCCceeeEecc-cccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeE
Q 010324 335 GLKSGKLLKEFRG-HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 413 (513)
Q Consensus 335 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 413 (513)
| .+++.+..+.. +...+.+++++|+|+.+++...++.|.+||.. ++....+... .+...+..+++.+++ .++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~----~~~~~p~~i~~~~~g-~l~ 178 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS----KHLEFPNGVVVNDKQ-EIF 178 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT----TTCSSEEEEEECSSS-EEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCC----CccCCcEEEEECCCC-CEE
Confidence 9 57777766643 34568999999999988887788999999964 5555555322 223457899999986 577
Q ss_pred EEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc-eEEEEECCCceeeEeeecccC--CeEEE
Q 010324 414 VVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR-NLYCFSHQSGKLEHLMKVHEK--DVIGV 490 (513)
Q Consensus 414 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~h~~--~v~~~ 490 (513)
++...++.|++|+..+..+..+.... ....+..++++++|+++++...++ .|.+||. +++.+..+..+.. .+.++
T Consensus 179 v~~~~~~~i~~~~~~g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYEGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV 256 (286)
T ss_dssp EEEGGGTEEEEEETTCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE
T ss_pred EEECCCCEEEEEcCCCCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE
Confidence 77778999999999887766654321 124578999999999888888776 9999995 5666666665543 47899
Q ss_pred EEcCCCCEEEEEECCCeEEeccC
Q 010324 491 THHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 491 ~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+++|+++++++ +.|++|++|+.
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEEC
T ss_pred EECCCCcEEEE-CCCCeEEEEEc
Confidence 99999987777 67999999974
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.83 E-value=1.3e-18 Score=179.47 Aligned_cols=282 Identities=11% Similarity=0.043 Sum_probs=192.8
Q ss_pred cccCceeEEEECCCCCEEEEE--ecCCeEEEEEeccccccccccccccccccccCCccEE---------EEEEc--CCCC
Q 010324 211 GTKSHAECARFSPDGQFLVSC--SFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVL---------CIEFS--RDSE 277 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g--~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~---------~l~~~--~~~~ 277 (513)
+|...+..++|++++-+++.+ +.++... ||....+.... .+..|...+. ...|+ |||+
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~ 91 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRAT-LVRRRADGAEE--------SALPAPWNVRNRVFEYSGFPWAGVPRPAGG 91 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEE-EEEECTTSCEE--------ESSCTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEE-EEEECCCCCcc--------eeCCCCccccccccccCCccceeeeecCCC
Confidence 788899999999887777777 5688886 99864333222 2222444444 55565 9999
Q ss_pred E-EEEEeC-CCcEEEEEcC--C-cceeeecccc----cccCeEEEEEccCCCEEEEeeCC----------CcEEEEecCC
Q 010324 278 M-LASGSQ-DGKIKVWRIR--S-GQCLRRLERA----HSEGVTSLVFSRDGSQILSTSFD----------STARIHGLKS 338 (513)
Q Consensus 278 ~-l~s~~~-dg~i~vwd~~--~-~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~ 338 (513)
. |+.++. +..|.+|++. . +. ...+... +...+.+++|+|||+.|++++.+ ..|++||+.+
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 8 776654 4567777765 2 43 4444421 56678999999999999998876 5899999987
Q ss_pred ------CceeeEec-ccccceeEEEEccCCCEEEEEeCC--------CcEEEEeCC-CCc--eeEeecCCCCCCCCCcee
Q 010324 339 ------GKLLKEFR-GHSSYVNDAIFTNDGSRVVTASSD--------CTVKVWDLK-STD--CLQTFKPPPPLRGGDASV 400 (513)
Q Consensus 339 ------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~v 400 (513)
++. ..+. .+...+..++|+|||++|+.++.+ ..|.+||+. ++. ....+.. .+...+
T Consensus 171 ~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~-----~~~~~~ 244 (662)
T 3azo_A 171 SAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG-----GPEEAI 244 (662)
T ss_dssp TTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE-----ETTBCE
T ss_pred CccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC-----CCCceE
Confidence 544 4454 555678899999999999987754 379999998 562 2222221 235678
Q ss_pred eEEEecCCCCCeEEEEcCCC--cEEEEEccCeEEEEeecCccCCC------cEEEEEECCCCCEEEEEecCceEEEE--E
Q 010324 401 NSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVVKSFSSGKREGG------DFVAACVSPKGEWIYCVGEDRNLYCF--S 470 (513)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~------~~~~~~~s~~~~~l~~g~~dg~i~iw--d 470 (513)
..+.|+|++. ++++++.++ .|+.||..+.....+........ .+..++++|+++++++++. +.+.+| |
T Consensus 245 ~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 245 AQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred cceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 8999999995 888888888 66667765544444443221110 1356888999999999998 988888 6
Q ss_pred CCCceeeEeeecccCCeEEE-EEcCCCCEEEEEECCCeEEec
Q 010324 471 HQSGKLEHLMKVHEKDVIGV-THHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 471 ~~~~~~~~~~~~h~~~v~~~-~~~p~~~~l~s~~~dg~i~iW 511 (513)
..+++ +..+..|.+.+..+ +++++.-.+++++.+....+|
T Consensus 323 ~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 323 PESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp TTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 55565 56677777778777 554444455555666555554
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=3.2e-17 Score=150.40 Aligned_cols=251 Identities=14% Similarity=0.217 Sum_probs=185.8
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEE-cCCCCEEEEEeC-CCcE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF-SRDSEMLASGSQ-DGKI 288 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~l~s~~~-dg~i 288 (513)
++-..+.+++++++|+++++.+.++.|. +||.. ++....+... ..-.++...+.++++ .+++.++++... ++.|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~-~~d~~-g~~~~~~~~~--~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQ-IFDKE-GRFKFQFGEC--GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEE-EECTT-SCEEEEECCB--SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEE-EECCC-CcEEEEeccc--CCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 4556789999999999999888999996 99976 4433322110 011235567899999 467766666543 7899
Q ss_pred EEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEec--ccccceeEEEEccCCCEEEE
Q 010324 289 KVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR--GHSSYVNDAIFTNDGSRVVT 366 (513)
Q Consensus 289 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~ 366 (513)
.+|| .+++.+..+...+...+.+++++|+|+.+++...++.|.+||. +++.+..+. .+...+.+++++++|+.+++
T Consensus 103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 9999 6677776665345567899999999998887778899999996 566666554 34456899999999998887
Q ss_pred EeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC-cEEEEEccCeEEEEeecCccCCCcE
Q 010324 367 ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS-SIYIMTLQGQVVKSFSSGKREGGDF 445 (513)
Q Consensus 367 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~ 445 (513)
...++.|++||.. ++.+..+... ++...+..+++.+++ .++++...++ .|.+|+..+..+..+.... ....+
T Consensus 181 ~~~~~~i~~~~~~-g~~~~~~~~~----g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~~ 253 (286)
T 1q7f_A 181 DNRAHCVKVFNYE-GQYLRQIGGE----GITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQLISALESKV-KHAQC 253 (286)
T ss_dssp EGGGTEEEEEETT-CCEEEEESCT----TTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCEEEEEEESS-CCSCE
T ss_pred ECCCCEEEEEcCC-CCEEEEEccC----CccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCCCEEEEEcccC-CCCcc
Confidence 7788999999974 5555555422 223467899999987 7777777775 9999998888777765533 23347
Q ss_pred EEEEECCCCCEEEEEecCceEEEEECCCce
Q 010324 446 VAACVSPKGEWIYCVGEDRNLYCFSHQSGK 475 (513)
Q Consensus 446 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 475 (513)
..++++|+|+++++ +.++.|++|+.....
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 78999999986666 679999999986543
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.81 E-value=7.3e-18 Score=158.34 Aligned_cols=270 Identities=11% Similarity=0.090 Sum_probs=190.6
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI 293 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~ 293 (513)
..|.+++|++++..++..+.++.++ .|. +.... .+..+...+.+++|+|+|++++++..++.|.+||.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~--------~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~ 73 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQ-TIT---AEPWL--------EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINP 73 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSC-EEE---CEEEE--------EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECT
T ss_pred cccceeeecCCccceeEEeecccCc-ccc---cceeE--------EEeccCccccCcEECCCCCEEEEECCCCEEEEEeC
Confidence 3467788999888887777788886 772 22111 22335667899999999998788888999999999
Q ss_pred CCcceeeecccccccCeEEEEEccCCCEEEEeeCC----CcEEEEecCCCceeeEec--ccccceeEEEEccCCCEEEEE
Q 010324 294 RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD----STARIHGLKSGKLLKEFR--GHSSYVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 294 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~ 367 (513)
.+++...... .+...+.+++++|+|++++++..+ +.|.+||..++.....+. .....+.+++++|+|+.+++.
T Consensus 74 ~~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 152 (333)
T 2dg1_A 74 ETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTD 152 (333)
T ss_dssp TTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEE
T ss_pred CCCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEe
Confidence 8887654432 356789999999999887777666 689999998776543332 234568999999999877766
Q ss_pred eC------CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeEEEEe----
Q 010324 368 SS------DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSF---- 435 (513)
Q Consensus 368 ~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~---- 435 (513)
.. .+.|..+|..+++...... ....+..++++|++..++++.+.++.|++|+.. +.....+
T Consensus 153 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~ 225 (333)
T 2dg1_A 153 FRGYSTNPLGGVYYVSPDFRTVTPIIQ-------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 225 (333)
T ss_dssp CCCBTTBCCEEEEEECTTSCCEEEEEE-------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred ccccccCCCceEEEEeCCCCEEEEeec-------CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence 53 3567777766554332211 122467899999874456666778899999994 3322211
Q ss_pred -ecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccC------CeEEEEEcCCCCEEEEEECC
Q 010324 436 -SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEK------DVIGVTHHPHRNLLATYGED 505 (513)
Q Consensus 436 -~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~~~~~p~~~~l~s~~~d 505 (513)
.... ....+..++++++|++.++...++.|.+||. +++.+..+..+.. .+.+++|+|++..|+.++.+
T Consensus 226 ~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 226 PYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 1111 1135678999999998888778899999998 5666666654433 68999999998776655554
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=3.3e-17 Score=153.40 Aligned_cols=246 Identities=11% Similarity=0.107 Sum_probs=183.2
Q ss_pred cCceeEEEECCCCCEEEEEecC------------------------CeEEEEEeccccccccccccccccccccCCccEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFD------------------------GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVL 268 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~d------------------------g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~ 268 (513)
-+.+.+++++|+|+++++...+ +.|. +||..+++...... .++-..+.
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~d~~~g~~~~~~~-------~~~~~~p~ 94 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTIL-VIDPNNAEILQSSG-------KNLFYLPH 94 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEE-EECTTTCCEEEEEC-------TTTCSSEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEE-EEECCCCeEEeccC-------CCccCCce
Confidence 4678999999999999988877 4684 99998887653221 12446789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCcc-eeeecc--------cccccCeEEEEEcc-CCCEEEEee-CCCcEEEEecC
Q 010324 269 CIEFSRDSEMLASGSQDGKIKVWRIRSGQ-CLRRLE--------RAHSEGVTSLVFSR-DGSQILSTS-FDSTARIHGLK 337 (513)
Q Consensus 269 ~l~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~--------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~i~d~~ 337 (513)
.++++|+|+++++...++.|++||..... .+..+. ..+-.....++++| ++..+++.+ .++.|++|| .
T Consensus 95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~ 173 (329)
T 3fvz_A 95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-P 173 (329)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-T
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-C
Confidence 99999999988888888999999975432 344442 13344689999999 788777776 689999999 5
Q ss_pred CCceeeEeccc----------ccceeEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEec
Q 010324 338 SGKLLKEFRGH----------SSYVNDAIFTND-GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLF 406 (513)
Q Consensus 338 ~~~~~~~~~~~----------~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (513)
+++.+..+... -..+..++++|+ +..+++...++.|++||..+++.+..+... .....+..+++.
T Consensus 174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~----~~~~~~~~~~~~ 249 (329)
T 3fvz_A 174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA----SFGRNVFAISYI 249 (329)
T ss_dssp TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT----TTTTCEEEEEEE
T ss_pred CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc----ccCCCcceeeec
Confidence 77777766422 234889999998 777777778899999999988888877543 234567788888
Q ss_pred CCCCCeEEE-------EcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 407 PKNPDHIVV-------CNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 407 ~~~~~~l~~-------~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
| + ..+.+ ...+..+++|+.. ++.+..+.....+...+..++++|+|..+++...++.|++|++..
T Consensus 250 p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 250 P-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp T-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred C-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 8 2 22222 2334589999976 666666543334456688999999998778888899999999753
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.81 E-value=2.1e-17 Score=156.46 Aligned_cols=287 Identities=13% Similarity=0.121 Sum_probs=196.1
Q ss_pred cccccCcccceeeeeccccCceeEEEECCCCCEEEEEe----------cCCeEEEEEeccccccccccccccccccccCC
Q 010324 195 DVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCS----------FDGFIEVVWDYLSGKLKKDLQYQADETFMMHD 264 (513)
Q Consensus 195 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~----------~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~ 264 (513)
.+++....+...++..+ ..+ .++|+|||+++++++ .++.|. +||..+.+....+...... ..+.
T Consensus 34 ~v~D~~t~~~~~~i~~g-~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~-v~d~~t~~~~~~i~~~~~~--~~~g 107 (361)
T 2oiz_A 34 HVYDYTNGKFLGMVPTA-FNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVE-VWDADKLTFEKEISLPPKR--VQGL 107 (361)
T ss_dssp EEEETTTCCEEEEEECC-EEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEE-EEETTTCCEEEEEEECTTB--CCBC
T ss_pred EEEECCCCeEEEEecCC-CCC--ceEECCCCCEEEEEEecccccccCCCCCEEE-EEECcCCcEEEEEEcCccc--cccC
Confidence 34555555666677644 333 899999999999986 367796 9999887776655432110 0123
Q ss_pred ccEEEEEEcCCCCEEEEEeC--CCcEEEEEcCCcceeee-cccccccCeEEEEEccCC-CEEEEeeCCCcEEEEecCC-C
Q 010324 265 ETVLCIEFSRDSEMLASGSQ--DGKIKVWRIRSGQCLRR-LERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKS-G 339 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~ 339 (513)
.....++++|||++|+++.. ++.|.+||+.+++.+.. +. .. ....+.+.|++ ..+++.+.||.+.+|+... +
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG--GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec--CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 45677999999999998874 57999999999988877 64 22 23346677765 6778889999999999865 5
Q ss_pred ceeeE------ecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCcee--EeecCCCC----CCCCCceeeEEEecC
Q 010324 340 KLLKE------FRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCL--QTFKPPPP----LRGGDASVNSVHLFP 407 (513)
Q Consensus 340 ~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~----~~~~~~~v~~~~~~~ 407 (513)
+.... +.....+ ..+.+++++..++..+.++.+.++|+...... ..+..... ..........++++|
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 185 KVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred cEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 54411 2222222 23345677888888888999999998755321 22211000 000001112367888
Q ss_pred CCCCeEEEEc----------CCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc--
Q 010324 408 KNPDHIVVCN----------KTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG-- 474 (513)
Q Consensus 408 ~~~~~l~~~~----------~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-- 474 (513)
++...+++.. ..+.|.+||.. ++.+..+..+ . +..++|+|+|++|++++. +.|.+||..++
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~----~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l 337 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR----D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP 337 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT----T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSC
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC----C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc
Confidence 8745554443 13589999998 5555555542 2 779999999999998887 99999999999
Q ss_pred eeeEeeecccCCeEEEEEcCCCC
Q 010324 475 KLEHLMKVHEKDVIGVTHHPHRN 497 (513)
Q Consensus 475 ~~~~~~~~h~~~v~~~~~~p~~~ 497 (513)
+.+..+..+......++++|+|.
T Consensus 338 ~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 338 KLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEEETTSCSSEEEEEECCCSC
T ss_pred eeeEEeccCCCCcEEEEecCCCC
Confidence 99888866777889999999985
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=1.4e-17 Score=173.62 Aligned_cols=292 Identities=13% Similarity=0.101 Sum_probs=188.1
Q ss_pred ccccccCcccceeeeeccccCc-----eeEEEECCCCCEEEEEecC---------CeEEEEEeccccccccccccccccc
Q 010324 194 QDVEDMYPTTLSHTIKFGTKSH-----AECARFSPDGQFLVSCSFD---------GFIEVVWDYLSGKLKKDLQYQADET 259 (513)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~s~~g~~la~g~~d---------g~i~~iwd~~~~~~~~~~~~~~~~~ 259 (513)
...++.........+. +|... ...++|||||++|++++.+ +.+ ++||+.+++...
T Consensus 38 i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~-~~~d~~~~~~~~--------- 106 (740)
T 4a5s_A 38 ILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY-DIYDLNKRQLIT--------- 106 (740)
T ss_dssp EEEEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE-EEEETTTTEECC---------
T ss_pred EEEEECCCCceEEEEe-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE-EEEECCCCcEEE---------
Confidence 3455555555444443 44432 2347899999999999876 566 499999887542
Q ss_pred cccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCe-----------------EEEEEccCCCEE
Q 010324 260 FMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGV-----------------TSLVFSRDGSQI 322 (513)
Q Consensus 260 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~l 322 (513)
+..|...+...+|||||+.||.+. ++.|++|++.++...+....++...+ ..+.|+|||+.|
T Consensus 107 l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~l 185 (740)
T 4a5s_A 107 EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL 185 (740)
T ss_dssp SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEE
T ss_pred cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEE
Confidence 233677899999999999999985 78999999988875543322332222 358999999999
Q ss_pred EEeeCCC------------------------------------cEEEEecCC---Cc--eeeEec------ccccceeEE
Q 010324 323 LSTSFDS------------------------------------TARIHGLKS---GK--LLKEFR------GHSSYVNDA 355 (513)
Q Consensus 323 ~~~~~dg------------------------------------~i~i~d~~~---~~--~~~~~~------~~~~~v~~~ 355 (513)
+.++.|. .|++||+.+ ++ ....+. ++...+..+
T Consensus 186 a~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 265 (740)
T 4a5s_A 186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV 265 (740)
T ss_dssp EEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEE
T ss_pred EEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEE
Confidence 9875332 488899988 73 223333 367789999
Q ss_pred EEccCCCEEEEEeC----CCcEEEEeCCCCc----eeEeecCCCCCCCCCcee-----eEEEecCCCCCeE-EEEcCCC-
Q 010324 356 IFTNDGSRVVTASS----DCTVKVWDLKSTD----CLQTFKPPPPLRGGDASV-----NSVHLFPKNPDHI-VVCNKTS- 420 (513)
Q Consensus 356 ~~~~~~~~l~~~~~----dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l-~~~~~~~- 420 (513)
+|+|||+.++.... +..|.+||+.+++ +........ ..+...+ ....|+|++..++ ..+..+|
T Consensus 266 ~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~--~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~ 343 (740)
T 4a5s_A 266 TWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE--MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGY 343 (740)
T ss_dssp EEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE--ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSC
T ss_pred EEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee--ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCc
Confidence 99999997665543 3469999999887 221110000 0122222 3678999985555 3443444
Q ss_pred -cEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC-------ceEEEEECCCceeeEeeec----ccCCeE
Q 010324 421 -SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-------RNLYCFSHQSGKLEHLMKV----HEKDVI 488 (513)
Q Consensus 421 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-------g~i~iwd~~~~~~~~~~~~----h~~~v~ 488 (513)
.|++|+..+.....+..+ ...+..+. .++++.|+..+.. ..|+..++..+.....+.. ....+.
T Consensus 344 ~~l~~~~~~~~~~~~lT~g---~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~ 419 (740)
T 4a5s_A 344 RHICYFQIDKKDCTFITKG---TWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYY 419 (740)
T ss_dssp EEEEEEETTCSSCEESCCS---SSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBE
T ss_pred eEEEEEECCCCceEecccC---CEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceE
Confidence 688888887666665543 23344433 2446666555433 3566667665544333332 235688
Q ss_pred EEEEcCCCCEEEEEE
Q 010324 489 GVTHHPHRNLLATYG 503 (513)
Q Consensus 489 ~~~~~p~~~~l~s~~ 503 (513)
.+.|+|++.+++...
T Consensus 420 ~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 420 SVSFSKEAKYYQLRC 434 (740)
T ss_dssp EEEECTTSSEEEEEE
T ss_pred EEEECCCCCEEEEEe
Confidence 999999998766544
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=3.2e-18 Score=164.48 Aligned_cols=256 Identities=14% Similarity=0.163 Sum_probs=173.9
Q ss_pred EEeccccccccccccccccccccCCccEEE-----EEEcCCCCEEEEEeC-CC--cEEEEEcCCcceeeecccccccCeE
Q 010324 240 VWDYLSGKLKKDLQYQADETFMMHDETVLC-----IEFSRDSEMLASGSQ-DG--KIKVWRIRSGQCLRRLERAHSEGVT 311 (513)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~-----l~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~ 311 (513)
+++..++.....+ ..|...... .+|+|||++|+.++. +| .|.+||+.+++...... .+...+.
T Consensus 14 ~~~~~~g~~~~~l--------t~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-~~~~~~~ 84 (388)
T 3pe7_A 14 YQDASTGAQVTRL--------TPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE-GRGDNTF 84 (388)
T ss_dssp EECTTTCCEEEEC--------SCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC-SSCBCSS
T ss_pred EecCCCCcceEEe--------cCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee-CCCCCcc
Confidence 5566555544332 235544555 789999999999987 66 48888998888765553 5555555
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEE--EccCCCEEEEEe---------------------
Q 010324 312 SLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAI--FTNDGSRVVTAS--------------------- 368 (513)
Q Consensus 312 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~--------------------- 368 (513)
.++|+|||+.|++++.++.|++||+.+++.......+...+.... ++|+++.++...
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 678999999999999999999999999987766665555554444 489999887432
Q ss_pred -CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecC-CCCCeEEEEcC------CCcEEEEEccCeEEEEeecCcc
Q 010324 369 -SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP-KNPDHIVVCNK------TSSIYIMTLQGQVVKSFSSGKR 440 (513)
Q Consensus 369 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~------~~~i~i~d~~~~~~~~~~~~~~ 440 (513)
.++.|.+||+.+++...... +...+..+.|+| ++ ..++.+.. ...|+++|..+.....+....
T Consensus 165 ~~~~~l~~~d~~~g~~~~l~~-------~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~- 235 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTVILQ-------ENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA- 235 (388)
T ss_dssp CCCEEEEEEETTTCCEEEEEE-------ESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC-
T ss_pred CCcceEEEEECCCCceEEeec-------CCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC-
Confidence 34679999999887544432 334678899999 77 55554443 347888888876655554422
Q ss_pred CCCcEEEEEECCCCCEEEEEec-Cc----eEEEEECCCceeeEe--eecccC---CeEEEEEcCCCCEEEEE--------
Q 010324 441 EGGDFVAACVSPKGEWIYCVGE-DR----NLYCFSHQSGKLEHL--MKVHEK---DVIGVTHHPHRNLLATY-------- 502 (513)
Q Consensus 441 ~~~~~~~~~~s~~~~~l~~g~~-dg----~i~iwd~~~~~~~~~--~~~h~~---~v~~~~~~p~~~~l~s~-------- 502 (513)
....+...+|+|||+.|+..+. ++ .|++||+.+++.... +.++.. ....+.|+|+|+.|+..
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 315 (388)
T 3pe7_A 236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK 315 (388)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence 1134678899999998766553 22 499999999875332 222110 11224799999887754
Q ss_pred -ECCCeEEeccC
Q 010324 503 -GEDCTMKLWKP 513 (513)
Q Consensus 503 -~~dg~i~iWdp 513 (513)
+.+..|.+||+
T Consensus 316 ~~~~~~i~~~d~ 327 (388)
T 3pe7_A 316 IENDPFLYVFNM 327 (388)
T ss_dssp -CCCCEEEEEET
T ss_pred cCCCCEEEEEec
Confidence 44668999974
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.79 E-value=8e-17 Score=152.13 Aligned_cols=256 Identities=13% Similarity=0.157 Sum_probs=173.8
Q ss_pred CceeEEEECCCCCEEEEEe---------cCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 214 SHAECARFSPDGQFLVSCS---------FDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~---------~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
..+...++ ||+++|... .++.+. +||+.+++... + ..+.+++|+|||++|+.++.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~-~~d~~~~~~~~---------l----~~~~~~~~SpDg~~la~~~~ 78 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIV-IENLKNNARRF---------I----ENATMPRISPDGKKIAFMRA 78 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEE-EEETTTCCEEE---------E----ESCEEEEECTTSSEEEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEE-EEeCCCCceEE---------c----ccCCCeEECCCCCEEEEEEe
Confidence 34566777 898888753 256774 89988765321 1 45788999999999998875
Q ss_pred C---C--cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC---------------------------CcEE
Q 010324 285 D---G--KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD---------------------------STAR 332 (513)
Q Consensus 285 d---g--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------g~i~ 332 (513)
+ + .|.+||+.+++...... +.. +..++|+|||+.|+.++.+ ..|+
T Consensus 79 ~~~~~~~~l~~~~~~~g~~~~l~~--~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (347)
T 2gop_A 79 NEEKKVSEIWVADLETLSSKKILE--AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW 155 (347)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEE--ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEE
T ss_pred ccCCCcceEEEEECCCCceEEEEc--CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEE
Confidence 4 3 48888888877655443 233 9999999999999887642 5799
Q ss_pred EEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCC-------cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEe
Q 010324 333 IHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC-------TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHL 405 (513)
Q Consensus 333 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (513)
+||+.+++.+..+.. . .+..+.|+|+| .++++..++ ...+|.+.+++. ..+.. + ..+..+
T Consensus 156 ~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~------~-~~~~~~-- 222 (347)
T 2gop_A 156 IFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFE------K-VSFYAV-- 222 (347)
T ss_dssp EEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEE------E-ESEEEE--
T ss_pred EEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEecc------C-cceeeE--
Confidence 999988876455554 3 78899999999 777776542 344444444443 33221 1 233333
Q ss_pred cCCCCCeEEEEcCC-------CcEEEEEccCeEEEEeecCccCCCcEEE-EEECCCCCEEEEEecCceEEEEECCCceee
Q 010324 406 FPKNPDHIVVCNKT-------SSIYIMTLQGQVVKSFSSGKREGGDFVA-ACVSPKGEWIYCVGEDRNLYCFSHQSGKLE 477 (513)
Q Consensus 406 ~~~~~~~l~~~~~~-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 477 (513)
+|++..+++.+... ..|++|| .+. ...+... +...+.. +.|+ +| ++++++.++.+++| +.+++..
T Consensus 223 spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~~--~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~ 295 (347)
T 2gop_A 223 DSDGERILLYGKPEKKYMSEHNKLYIYD-GKE-VMGILDE--VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK 295 (347)
T ss_dssp EECSSCEEEEECCSSSCCCSSCEEEEEC-SSC-EEESSTT--CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE
T ss_pred CCCCCEEEEEEccccCCccccceEEEEC-CCc-eEecccc--CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE
Confidence 78874444444332 4688888 443 3333322 2345665 8899 88 88999999999999 8766654
Q ss_pred EeeecccCCeEEEEEcCCCCEEEEEECCCeE-Eec
Q 010324 478 HLMKVHEKDVIGVTHHPHRNLLATYGEDCTM-KLW 511 (513)
Q Consensus 478 ~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i-~iW 511 (513)
..+ .+.+.|.+++|+| .++++++.++.. .+|
T Consensus 296 ~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 296 PIA-KGRHWIMGFDVDE--IVVYLKETATRLRELF 327 (347)
T ss_dssp EEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred EEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence 443 4577899999999 677777777654 666
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.78 E-value=5.4e-17 Score=168.42 Aligned_cols=242 Identities=13% Similarity=0.125 Sum_probs=170.0
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCc------
Q 010324 262 MHDETVLCIEFSRDSEMLASGSQDG-----KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDST------ 330 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------ 330 (513)
+|...+..++|||||++||.++.++ .|++||+.+++...... ....+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EEECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc--cCcccceEEEEeCCCEEEEEEECCccccccc
Confidence 3555789999999999999876543 89999999998765432 2233678999999999999988766
Q ss_pred ----------EEEEecCCCce----eeEecccccceeEEEEccCCCEEEEEeC-----CCcEEEEeCCC------Cc-ee
Q 010324 331 ----------ARIHGLKSGKL----LKEFRGHSSYVNDAIFTNDGSRVVTASS-----DCTVKVWDLKS------TD-CL 384 (513)
Q Consensus 331 ----------i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~-~~ 384 (513)
|++|++.++.. +.....+...+.++.|+|||++|+.++. +..|.+||+.+ +. ..
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 99999987762 2222334556789999999999888765 56899999976 42 23
Q ss_pred EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC---CcEEEEEccCeE---EEEeecCccCCCcEEEEEECCCCCEEE
Q 010324 385 QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT---SSIYIMTLQGQV---VKSFSSGKREGGDFVAACVSPKGEWIY 458 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~---~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~ 458 (513)
..+... ...+.. .++|++..+++.+..+ +.|.+||+.+.. ...+.... ....+..+++++++.+++
T Consensus 280 ~~l~~~------~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 280 VKLIDN------FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp EEEECS------SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred EEeeCC------CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence 333321 222222 4677774555555443 369999987432 23333322 123567788888888888
Q ss_pred EEecCce--EEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEE-E---CCCeEEeccC
Q 010324 459 CVGEDRN--LYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATY-G---EDCTMKLWKP 513 (513)
Q Consensus 459 ~g~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-~---~dg~i~iWdp 513 (513)
+...++. |++|++.+|+.+..+..+.+.+..+.++|++..++.. + ..++|..||.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 8888884 6777877788777787788889999999988755533 3 3467888873
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=5.8e-17 Score=167.10 Aligned_cols=254 Identities=13% Similarity=0.080 Sum_probs=160.5
Q ss_pred EEEEC--CCCCE-EEEEec-CCeEEEEEecc--c-cccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC-----
Q 010324 218 CARFS--PDGQF-LVSCSF-DGFIEVVWDYL--S-GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD----- 285 (513)
Q Consensus 218 ~~~~s--~~g~~-la~g~~-dg~i~~iwd~~--~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d----- 285 (513)
...|+ |||+. |+.++. +..| ++|+.. . +.. ..+... ....|...+.+++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l-~~~~~~~~g~~~~-~~l~~~---~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 155 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRL-YAFEPDAPGGAVP-RPLTPV---SAVGGGLRWADPVLLPERGEVWCMAEEFTGEG 155 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCE-EEECTTSTTCCCC-EECSCC---CCSTTCEEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred cceeeeecCCCeEEEEEECCCCeE-EEEcCCCCCCCCC-EeccCC---ccCCCCccccCcEECCCCCEEEEEEecccCCC
Confidence 45555 99998 776654 4556 366655 2 332 111100 000156788999999999999998876
Q ss_pred -----CcEEEEEcCC------cceeeecccccccCeEEEEEccCCCEEEEeeCC--------CcEEEEecC-CC---cee
Q 010324 286 -----GKIKVWRIRS------GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD--------STARIHGLK-SG---KLL 342 (513)
Q Consensus 286 -----g~i~vwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~ 342 (513)
..|++||+.+ ++.. .+...+...+..++|+|||++|+.++.+ ..|++||+. ++ +..
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~ 234 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR 234 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred CCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence 5899999988 5543 3320234577889999999999988755 379999998 56 333
Q ss_pred eEecccccceeEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeEeecCCCCCCC--CCceeeEEEecCCCCCeEEEEcC
Q 010324 343 KEFRGHSSYVNDAIFTNDGSRVVTASSDC--TVKVWDLKSTDCLQTFKPPPPLRG--GDASVNSVHLFPKNPDHIVVCNK 418 (513)
Q Consensus 343 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~ 418 (513)
.....+...+..+.|+|||+++++++.++ .|.+||+.+++............. -...+..++++|++ .++++++.
T Consensus 235 ~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~ 313 (662)
T 3azo_A 235 TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK 313 (662)
T ss_dssp EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS
T ss_pred EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC-EEEEEEEc
Confidence 33444567899999999999888888888 677777766664433221111000 00114567888876 78888888
Q ss_pred CCcEEEE--EccCeEEEEeecCccCCCcEEEEEECCCCCEE--EEEecCc--eEEEEECCCceeeEeeecc
Q 010324 419 TSSIYIM--TLQGQVVKSFSSGKREGGDFVAACVSPKGEWI--YCVGEDR--NLYCFSHQSGKLEHLMKVH 483 (513)
Q Consensus 419 ~~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l--~~g~~dg--~i~iwd~~~~~~~~~~~~h 483 (513)
+.+.+| |..+.....+... ...+..+ ++++++.+ ++++.+. .|+.+|+.+++.......+
T Consensus 314 -~~~~l~~~d~~~~~~~~l~~~---~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~ 379 (662)
T 3azo_A 314 -GAAVLGILDPESGELVDAAGP---WTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARH 379 (662)
T ss_dssp -SSCEEEEEETTTTEEEECCSS---CCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCC
T ss_pred -CccEEEEEECCCCcEEEecCC---CCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCC
Confidence 988888 5555555555432 3345555 14444433 3344443 5777787777655443333
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.76 E-value=1.5e-14 Score=133.21 Aligned_cols=278 Identities=12% Similarity=0.113 Sum_probs=195.9
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
.+...+.+++++++|+..++...++.|. .||.. +.... +. ...+...+.+++++++|...++...++.|..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~-~~d~~-~~~~~-~~------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 82 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMIS-CINLD-GKITE-YP------LPTPDAKVMCLTISSDGEVWFTENAANKIGR 82 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEE-EECTT-CCEEE-EE------CSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEE-EEcCC-CCeEE-ec------CCcccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence 3456789999999999888777788895 99987 44321 11 1113467999999999988777766889999
Q ss_pred EEcCCcceeeecc-cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeE-ecccccceeEEEEccCCCEEEEEe
Q 010324 291 WRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE-FRGHSSYVNDAIFTNDGSRVVTAS 368 (513)
Q Consensus 291 wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~ 368 (513)
||.. ++. ..+. ......+.++++.++|..+++...++.|..||. +++.... .......+.+++++++|+..++..
T Consensus 83 ~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 159 (299)
T 2z2n_A 83 ITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTEN 159 (299)
T ss_dssp ECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEET
T ss_pred ECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeC
Confidence 9976 442 2222 124557899999999988877777889999998 5554332 223445689999999998777777
Q ss_pred CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEE
Q 010324 369 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAA 448 (513)
Q Consensus 369 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 448 (513)
.++.|..||. +++... +... .....+..+++.+++ .++++...++.|..|+..+. ...+... .....+..+
T Consensus 160 ~~~~i~~~~~-~g~~~~-~~~~----~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~~~~~~-~~~~~~~~i 230 (299)
T 2z2n_A 160 QNNAIGRITE-SGDITE-FKIP----TPASGPVGITKGNDD-ALWFVEIIGNKIGRITTSGE-ITEFKIP-TPNARPHAI 230 (299)
T ss_dssp TTTEEEEECT-TCCEEE-EECS----STTCCEEEEEECTTS-SEEEEETTTTEEEEECTTCC-EEEEECS-STTCCEEEE
T ss_pred CCCEEEEEcC-CCcEEE-eeCC----CCCCcceeEEECCCC-CEEEEccCCceEEEECCCCc-EEEEECC-CCCCCceeE
Confidence 7789999998 665443 2111 223457889999876 66666667889999999544 3333222 234568899
Q ss_pred EECCCCCEEEEEecCceEEEEECCCceeeEe-eecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 449 CVSPKGEWIYCVGEDRNLYCFSHQSGKLEHL-MKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 449 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+++++|+..++...++.|..||. +++.... +..+...+.++++ +++.++++.+ .+.+..++
T Consensus 231 ~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~ 292 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLT 292 (299)
T ss_dssp EECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEE
T ss_pred EECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEE
Confidence 99999996666657899999998 4543322 3344567899999 8888777665 44555554
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=1.1e-17 Score=161.15 Aligned_cols=236 Identities=12% Similarity=0.114 Sum_probs=161.3
Q ss_pred ccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce
Q 010324 265 ETVLCIEFSRDSEMLASGSQD---GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 341 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 341 (513)
..+.+++|+|||++|+.+... ..|.+||+.+++...... .+......+.|+|||+.|+.++.++.|++||+.+++.
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence 336778999999998887543 378889998887544332 3332233478999999999999999999999988876
Q ss_pred eeEecccccceeE-------------------EEEccCCCEEEEE-----eCCCcEEEEeCCCCceeEeecCCCCCCCCC
Q 010324 342 LKEFRGHSSYVND-------------------AIFTNDGSRVVTA-----SSDCTVKVWDLKSTDCLQTFKPPPPLRGGD 397 (513)
Q Consensus 342 ~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 397 (513)
......+...... +.|+|+++.++.+ ..+..|.+||+.+++...... +.
T Consensus 115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-------~~ 187 (396)
T 3c5m_A 115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-------DT 187 (396)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-------ES
T ss_pred EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-------CC
Confidence 5554433332222 3467777766554 356789999999887654432 34
Q ss_pred ceeeEEEecC-CCCCeEEEEcCC------CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC-----ce
Q 010324 398 ASVNSVHLFP-KNPDHIVVCNKT------SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-----RN 465 (513)
Q Consensus 398 ~~v~~~~~~~-~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~ 465 (513)
..+..+.|+| ++ ..++..+.+ ..|++|++.+.....+... .....+..++|+|+|++|+.++.+ +.
T Consensus 188 ~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 188 AWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH-AEGESCTHEFWIPDGSAMAYVSYFKGQTDRV 265 (396)
T ss_dssp SCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC-CTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred cccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCceeEeecc-CCCccccceEECCCCCEEEEEecCCCCccce
Confidence 4678899999 55 544444333 4688899876554444431 112357788999999988777644 55
Q ss_pred EEEEECCCceeeEeeecccCCeEEEEEcC-CCCEEEEEE----------------CCCeEEeccC
Q 010324 466 LYCFSHQSGKLEHLMKVHEKDVIGVTHHP-HRNLLATYG----------------EDCTMKLWKP 513 (513)
Q Consensus 466 i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~----------------~dg~i~iWdp 513 (513)
|++||+.+++........ ... +.|+| +++++++++ .++.|.+||+
T Consensus 266 l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 266 IYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 999999988754433221 233 89999 999888765 3467888874
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.75 E-value=9e-15 Score=145.40 Aligned_cols=303 Identities=11% Similarity=0.115 Sum_probs=209.6
Q ss_pred ccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEecc--ccccccccccccccccccCCccEEE
Q 010324 192 MKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYL--SGKLKKDLQYQADETFMMHDETVLC 269 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~--~~~~~~~~~~~~~~~~~~h~~~v~~ 269 (513)
....+.|....+...++..+. .+.++.|||||+++++++.|+.|. +||+. +++....+. .......
T Consensus 177 ~~V~viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~-viD~~~~t~~~v~~i~---------~G~~P~~ 244 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVN-MIDLWMKEPTTVAEIK---------IGSEARS 244 (567)
T ss_dssp TEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEE-EEETTSSSCCEEEEEE---------CCSEEEE
T ss_pred CeEEEEECCCCeEEEEEeCCC--CccceEECCCCCEEEEEcCCCeEE-EEECCCCCCcEeEEEe---------cCCCCce
Confidence 344456666667777776443 567899999999999999999996 99995 655554333 2334679
Q ss_pred EEEc----CCCCEEEEEeC-CCcEEEEEcCCcceeeecccc---------c-ccCeEEEEEccCCCEEE-EeeCCCcEEE
Q 010324 270 IEFS----RDSEMLASGSQ-DGKIKVWRIRSGQCLRRLERA---------H-SEGVTSLVFSRDGSQIL-STSFDSTARI 333 (513)
Q Consensus 270 l~~~----~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~---------~-~~~v~~~~~~~~~~~l~-~~~~dg~i~i 333 (513)
++|+ |||+++++++. ++.|.++|..+.+.+..+... | ...+..+..++++..++ ....+|.|.+
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 9999 69998888765 589999999999888776521 1 22678889998866555 4455699999
Q ss_pred EecCCCceee--EecccccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeecC-CCCCCCCCceeeEEEecCCC
Q 010324 334 HGLKSGKLLK--EFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWDLKSTDCLQTFKP-PPPLRGGDASVNSVHLFPKN 409 (513)
Q Consensus 334 ~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~ 409 (513)
+|..+.+... .+. ......++.|+|+|++++++. .++.|.++|+.+++....+.. .. ..|.+....+ ++|++
T Consensus 325 vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~--~Phpg~g~~~-~~p~~ 400 (567)
T 1qks_A 325 VDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ--TPHPGRGANF-VHPTF 400 (567)
T ss_dssp EETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS--SBCCTTCEEE-EETTT
T ss_pred EecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc--CCCCccceee-ECCCC
Confidence 9987654322 222 234567889999999887766 578899999999988777653 21 1222211122 56765
Q ss_pred CCeEEEEc-CCCcEEEEEccC--------eEEEEeecCccCCCcEEEEEECCCCCEEEEEec-------CceEEEEECCC
Q 010324 410 PDHIVVCN-KTSSIYIMTLQG--------QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGE-------DRNLYCFSHQS 473 (513)
Q Consensus 410 ~~~l~~~~-~~~~i~i~d~~~--------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-------dg~i~iwd~~~ 473 (513)
...++++. .++.|.++|... +.+..+.... ..-..+..+|+++++++... .+.|.++|+.+
T Consensus 401 g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g---~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 401 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG---GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC---CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 45555554 568999999873 3455554422 22234678999999998773 45999999987
Q ss_pred c-----ee-eEeee--------cccCCeEEEEEcCCCCEEEEEE-----CCCeEEeccC
Q 010324 474 G-----KL-EHLMK--------VHEKDVIGVTHHPHRNLLATYG-----EDCTMKLWKP 513 (513)
Q Consensus 474 ~-----~~-~~~~~--------~h~~~v~~~~~~p~~~~l~s~~-----~dg~i~iWdp 513 (513)
. .. ...+. .....+..+.|+|+|..+..+. .++.|.|+|.
T Consensus 478 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 478 MTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp CCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred ccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence 6 21 12332 1235788999999998776653 3788988874
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.75 E-value=8.1e-16 Score=143.70 Aligned_cols=260 Identities=11% Similarity=0.123 Sum_probs=184.7
Q ss_pred cCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEE
Q 010324 233 FDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTS 312 (513)
Q Consensus 233 ~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 312 (513)
.+++|. ++|..+++....+..... -.........+++. +++..++...++.|.+||..+++.+.++. .......
T Consensus 15 ~~~~l~-~~d~~t~~~~~~i~~~~n--~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~ 88 (328)
T 3dsm_A 15 SNATLS-YYDPATCEVENEVFYRAN--GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRY 88 (328)
T ss_dssp CCBEEE-EEETTTTEEECSHHHHHH--SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEE
T ss_pred CCceEE-EEECCCCEEhhhhHhhhc--CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcE
Confidence 488996 999999887654421100 01123456778875 34455555567899999999999988874 4567899
Q ss_pred EEEccCCCEEEEee-CCCcEEEEecCCCceeeEecccc-----cceeEEEEccCCCEEEEEe--CCCcEEEEeCCCCcee
Q 010324 313 LVFSRDGSQILSTS-FDSTARIHGLKSGKLLKEFRGHS-----SYVNDAIFTNDGSRVVTAS--SDCTVKVWDLKSTDCL 384 (513)
Q Consensus 313 ~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~ 384 (513)
+++++++ .++++. .++.|.+||..+++....+.... .....+++ . +..+++++ .++.|.++|+.+++..
T Consensus 89 i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 89 IHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVV 165 (328)
T ss_dssp EEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred EEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEE
Confidence 9999998 455554 89999999999998877765433 14667777 3 44555554 4889999999999887
Q ss_pred EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC----------CcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCC
Q 010324 385 QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT----------SSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPK 453 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~----------~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~ 453 (513)
..+... .....+.+.|++ .+++++..+ +.|.++|.. ++....+.... +..+..++++|+
T Consensus 166 ~~i~~g-------~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d 235 (328)
T 3dsm_A 166 DELTIG-------IQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGT 235 (328)
T ss_dssp EEEECS-------SCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTT
T ss_pred EEEEcC-------CCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecC
Confidence 776532 234677888876 566665554 789999998 44444443321 235789999999
Q ss_pred CCEEEEEecCceEEEEECCCceeeEe--eecccCCeEEEEEcC-CCCEEEEE----ECCCeEEeccC
Q 010324 454 GEWIYCVGEDRNLYCFSHQSGKLEHL--MKVHEKDVIGVTHHP-HRNLLATY----GEDCTMKLWKP 513 (513)
Q Consensus 454 ~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p-~~~~l~s~----~~dg~i~iWdp 513 (513)
++.++++.. .|++||..+++.... +..+.....+++++| ++.++++. ..++.|.+||+
T Consensus 236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 236 RDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp SCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred CCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 999998765 999999998876421 222245788999999 56666666 57899999986
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.75 E-value=4.4e-17 Score=168.56 Aligned_cols=275 Identities=11% Similarity=0.030 Sum_probs=177.1
Q ss_pred CCCCEEEEEecCC---eEEEEEecc--ccccccccccccccccccCCccEEEEEEcCCCCEEEEE-----eCCCcEEEEE
Q 010324 223 PDGQFLVSCSFDG---FIEVVWDYL--SGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG-----SQDGKIKVWR 292 (513)
Q Consensus 223 ~~g~~la~g~~dg---~i~~iwd~~--~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-----~~dg~i~vwd 292 (513)
|+|++++....++ .- .+|... .+.....+ .....-.+|...+.+++|||||++||.+ +.+..|++||
T Consensus 77 ~dG~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~l~--d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKA-ILYWRQGESGQEKVLL--DPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp EETTEEEEEEECTTCSSC-EEEEEESTTSCCEEEE--CGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred EECCEEEEEEEcCCCeEE-EEEEEcCCCCCcEEEE--chHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence 5677777665543 23 255543 33211111 1111123466689999999999999944 3456899999
Q ss_pred cCCccee-eecccccccCeEEEEEccCCCEEEEeeCCCc-------------EEEEecCCCc----eeeEecccccceeE
Q 010324 293 IRSGQCL-RRLERAHSEGVTSLVFSRDGSQILSTSFDST-------------ARIHGLKSGK----LLKEFRGHSSYVND 354 (513)
Q Consensus 293 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~----~~~~~~~~~~~v~~ 354 (513)
+.+++.+ .... .......++|+|||+.|+.++.|.. |++|++.++. .+.....+...+.+
T Consensus 154 l~tg~~~~~~~~--~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~ 231 (695)
T 2bkl_A 154 VDSGEWSKVDVI--EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ 231 (695)
T ss_dssp TTTCCBCSSCCB--SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred CCCCCCcCCccc--CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence 9998865 2111 1111267999999999999988776 9999998776 33333445567889
Q ss_pred EEEccCCCEEEEEeCCC----cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc---CCCcEEEEEc
Q 010324 355 AIFTNDGSRVVTASSDC----TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN---KTSSIYIMTL 427 (513)
Q Consensus 355 ~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~~~~i~i~d~ 427 (513)
+.|+|||++|+.++.++ .|.+||..++....... +...+....+ +++. +++.+. .++.|.+||+
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~-------~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~ 302 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK-------GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDP 302 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE-------CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBT
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec-------CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeC
Confidence 99999999998887666 67777765554332222 1223344445 5664 555554 3578999998
Q ss_pred cCeE---EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECC-CceeeEeeecc-cCCeEEEEEcCCCCEEEEE
Q 010324 428 QGQV---VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ-SGKLEHLMKVH-EKDVIGVTHHPHRNLLATY 502 (513)
Q Consensus 428 ~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~ 502 (513)
.+.. ...+.... ....+..++++ ++.++++...|+..++|.+. +++....+..+ .+.+..++++|++..++..
T Consensus 303 ~~~~~~~~~~l~~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 380 (695)
T 2bkl_A 303 AKPARASWKEIVPED-SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYV 380 (695)
T ss_dssp TBCSGGGCEEEECCC-SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEE
T ss_pred CCCCccCCeEEecCC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEE
Confidence 7432 23333221 13446677887 67788888899988877654 45555556555 5678888999988766633
Q ss_pred E----CCCeEEeccC
Q 010324 503 G----EDCTMKLWKP 513 (513)
Q Consensus 503 ~----~dg~i~iWdp 513 (513)
. ..++|++||.
T Consensus 381 ~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 381 FTSFTTPRQIYKTSV 395 (695)
T ss_dssp EEETTEEEEEEEEET
T ss_pred EcCCCCCCEEEEEEC
Confidence 2 3477888873
No 184
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.75 E-value=1.1e-15 Score=138.51 Aligned_cols=220 Identities=14% Similarity=0.164 Sum_probs=175.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccc-cccee
Q 010324 275 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH-SSYVN 353 (513)
Q Consensus 275 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~ 353 (513)
.++.|++++.++.|.+||.++|+.+.++.......+.++.++|+|++++ +.++.|..||. +++.+..+..+ ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 4578999999999999999899999988732224788999999999888 45788999998 89999988865 34788
Q ss_pred EEEEccCCCEEEEEeC-CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEE
Q 010324 354 DAIFTNDGSRVVTASS-DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV 432 (513)
Q Consensus 354 ~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 432 (513)
++.+.++|+.+++.+. ++.+..+|. +++.+..+...............+...+++ .++++...++.|..||..++.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPNGQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTTSCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEECCCCCEE
Confidence 8999999999999887 888888886 677777765432221222344556677776 8899999999999999998888
Q ss_pred EEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeeccc------CCeEEEEEcCCCCEEEEEE
Q 010324 433 KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHE------KDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~~~~~p~~~~l~s~~ 503 (513)
..+... ..+..+...++|+.+++++.++.|..+|..+|+.+..+..+. ..+..++..++|+++++..
T Consensus 159 w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 159 NSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 887763 234467778999999999988999999999999998887543 2278888999999888874
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=4.8e-16 Score=161.26 Aligned_cols=246 Identities=14% Similarity=0.113 Sum_probs=172.6
Q ss_pred cccCceeEEEECCCCCEEEEEecCC-----eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDG-----FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg-----~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 285 (513)
+|...+..++|||||++||.++.++ .|+ +||+.+++...... ....+.+++|+|||+.|+.++.+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~-v~d~~tg~~~~~~~---------~~~~~~~~~wspDg~~l~~~~~~ 191 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIK-FMKVDGAKELPDVL---------ERVKFSCMAWTHDGKGMFYNAYP 191 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEE-EEETTTTEEEEEEE---------EEECSCCEEECTTSSEEEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEE-EEECCCCCCCcccc---------cCcccceEEEEeCCCEEEEEEEC
Confidence 4545688999999999999876544 895 99999887653211 12236689999999999999887
Q ss_pred Cc----------------EEEEEcCCccee--eecc-cccccCeEEEEEccCCCEEEEeeC-----CCcEEEEecCC---
Q 010324 286 GK----------------IKVWRIRSGQCL--RRLE-RAHSEGVTSLVFSRDGSQILSTSF-----DSTARIHGLKS--- 338 (513)
Q Consensus 286 g~----------------i~vwd~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~--- 338 (513)
+. |++|++.+++.. ..+. ..+...+..+.|+|||++|+.++. +..|++||+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred CccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence 66 999999887632 2222 124556789999999999988765 56899999976
Q ss_pred ---Cc-eeeEecccccceeEEEEccCCCEEEEEeCC----CcEEEEeCCCCce--eEeecCCCCCCCCCceeeEEEecCC
Q 010324 339 ---GK-LLKEFRGHSSYVNDAIFTNDGSRVVTASSD----CTVKVWDLKSTDC--LQTFKPPPPLRGGDASVNSVHLFPK 408 (513)
Q Consensus 339 ---~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (513)
+. ....+..+...+.. .|+|+|+.|+..+.. +.|.+||+.++.. ...+.... ....+..+.+++.
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~ 346 (710)
T 2xdw_A 272 GITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH----EKDVLEWVACVRS 346 (710)
T ss_dssp SSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC----SSCEEEEEEEETT
T ss_pred ccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC----CCCeEEEEEEEcC
Confidence 43 35555555555544 588999988777653 3599999987642 23332211 1136778888854
Q ss_pred CCCeEEEEcCCCc--EEEEEc-cCeEEEEeecCccCCCcEEEEEECCCCCEEEEEe----cCceEEEEECCCce
Q 010324 409 NPDHIVVCNKTSS--IYIMTL-QGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG----EDRNLYCFSHQSGK 475 (513)
Q Consensus 409 ~~~~l~~~~~~~~--i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----~dg~i~iwd~~~~~ 475 (513)
+ .++++...++. |++|++ .+.....+... .+.+..++++|++..++... ..+.|+.||+.+++
T Consensus 347 ~-~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~---~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 347 N-FLVLCYLHDVKNTLQLHDLATGALLKIFPLE---VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp T-EEEEEEEETTEEEEEEEETTTCCEEEEECCC---SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred C-EEEEEEEECCEEEEEEEECCCCCEEEecCCC---CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4 67777777774 666777 46555555432 45677889999998766443 35789999998876
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.74 E-value=1.8e-15 Score=139.44 Aligned_cols=230 Identities=11% Similarity=0.011 Sum_probs=169.3
Q ss_pred ccCCccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC
Q 010324 261 MMHDETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG 339 (513)
Q Consensus 261 ~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 339 (513)
..+.....+++|+|+|+ +++++..++.|..||..++ ...+. .+...+.+++++|+|+++++...++.|.+||..++
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~-~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM-HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE-SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE-CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 34566788999999998 7778888999999998877 45554 46677999999999998777777789999999888
Q ss_pred ceeeEeccc----ccceeEEEEccCCCEEEEE----e-------------CCCcEEEEeCCCCceeEeecCCCCCCCCCc
Q 010324 340 KLLKEFRGH----SSYVNDAIFTNDGSRVVTA----S-------------SDCTVKVWDLKSTDCLQTFKPPPPLRGGDA 398 (513)
Q Consensus 340 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~~----~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 398 (513)
+........ ...+.+++++|+|+++++. + ..+.|..++.. ++.. .+. ....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~------~~~~ 172 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-API------RDRV 172 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEE------CCCS
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Eee------cCCC
Confidence 754433221 2356789999999988873 2 13456666655 4432 222 2234
Q ss_pred eeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeE---EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 399 SVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQV---VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 399 ~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
....++++|++ ..+++.+.++.|++|++. +.. ...+ . .....+..++++++|++.++. ++.|.+||..
T Consensus 173 ~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~--~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~- 245 (296)
T 3e5z_A 173 KPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHF-T--VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD- 245 (296)
T ss_dssp SEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEE-C--CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred CCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e--CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence 56889999998 555888888999999986 332 2222 2 234456679999999866655 8899999986
Q ss_pred ceeeEeeecccCCeEEEEE-cCCCCEEEEEECCCeEE
Q 010324 474 GKLEHLMKVHEKDVIGVTH-HPHRNLLATYGEDCTMK 509 (513)
Q Consensus 474 ~~~~~~~~~h~~~v~~~~~-~p~~~~l~s~~~dg~i~ 509 (513)
++.+..+..+.. +++++| .|+++.|++++.++..+
T Consensus 246 g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 246 GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWS 281 (296)
T ss_dssp SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence 777888887777 999999 58988888888876444
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.74 E-value=2.5e-15 Score=136.11 Aligned_cols=245 Identities=13% Similarity=0.104 Sum_probs=185.7
Q ss_pred CCCEEEEEecCCeEEEEEeccccccccccccccccccccCC-ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeec
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD-ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 302 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 302 (513)
.++.|++++.|+.|. +||..+|+.+..+.. +. ..+.+++++|+|++++ +.++.|..||. +|+.+..+
T Consensus 4 ~~~~lv~~~~~~~v~-~~d~~tG~~~w~~~~--------~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~ 71 (276)
T 3no2_A 4 PQHLLVGGSGWNKIA-IINKDTKEIVWEYPL--------EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNI 71 (276)
T ss_dssp CCEEEEECTTCSEEE-EEETTTTEEEEEEEC--------CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEE
T ss_pred CCcEEEeeCCCCEEE-EEECCCCeEEEEeCC--------CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEE
Confidence 467899999999996 999989998876653 33 4678999999999888 35778999998 89999888
Q ss_pred ccccccCeEEEEEccCCCEEEEeeC-CCcEEEEecCCCceeeEecc------cccceeEEEEccCCCEEEEEeCCCcEEE
Q 010324 303 ERAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKSGKLLKEFRG------HSSYVNDAIFTNDGSRVVTASSDCTVKV 375 (513)
Q Consensus 303 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i 375 (513)
.......+.++.+.++|+.+++.+. ++.|..+|. +|+.+.++.. +......+.+.++|+++++...++.|..
T Consensus 72 ~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~ 150 (276)
T 3no2_A 72 AAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVRE 150 (276)
T ss_dssp ECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEE
T ss_pred cCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEE
Confidence 7433457889999999999999887 788888886 7887776642 2234556788999999999999999999
Q ss_pred EeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccC---CCcEEEEEEC
Q 010324 376 WDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKRE---GGDFVAACVS 451 (513)
Q Consensus 376 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~---~~~~~~~~~s 451 (513)
||.. ++.+.++... ..+.++...+++ ..++++..++.|..+|.. ++.+..+...... -..+..++..
T Consensus 151 ~d~~-G~~~w~~~~~-------~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~ 221 (276)
T 3no2_A 151 IAPN-GQLLNSVKLS-------GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL 221 (276)
T ss_dssp ECTT-SCEEEEEECS-------SCCCEEEECTTS-CEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred ECCC-CCEEEEEECC-------CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEc
Confidence 9988 9988888643 234556677766 788888888899999999 8888888643211 2346788889
Q ss_pred CCCCEEEEEecC--------ceEEEEEC-CCceeeEeeeccc--CCeEEE
Q 010324 452 PKGEWIYCVGED--------RNLYCFSH-QSGKLEHLMKVHE--KDVIGV 490 (513)
Q Consensus 452 ~~~~~l~~g~~d--------g~i~iwd~-~~~~~~~~~~~h~--~~v~~~ 490 (513)
++|..+++.... +..+++.+ .+|+.+..+..+. +.+.++
T Consensus 222 ~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 222 QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred CCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 999988887421 23345555 5778877776543 344444
No 188
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.73 E-value=1.8e-14 Score=136.33 Aligned_cols=274 Identities=9% Similarity=-0.004 Sum_probs=185.4
Q ss_pred ECCCCCEEEEEec--CC---eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEe----------CC
Q 010324 221 FSPDGQFLVSCSF--DG---FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS----------QD 285 (513)
Q Consensus 221 ~s~~g~~la~g~~--dg---~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d 285 (513)
..|+++++.+... .+ .|. ++|..+++....+.. ...+ .++++|||++++++. .+
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~-v~D~~t~~~~~~i~~--------g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~ 96 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQW-VLDAGSGSILGHVNG--------GFLP--NPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEE-EEECCCCeEEEEecC--------CCCC--CeEECCCCCEEEEEeccccccccCCCC
Confidence 4467777776653 22 775 999998887654432 2233 899999999999886 36
Q ss_pred CcEEEEEcCCcceeeecccc-c-----ccCeEEEEEccCCCEEEEeeC--CCcEEEEecCCCceeeE-ecccccceeEEE
Q 010324 286 GKIKVWRIRSGQCLRRLERA-H-----SEGVTSLVFSRDGSQILSTSF--DSTARIHGLKSGKLLKE-FRGHSSYVNDAI 356 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~ 356 (513)
+.|.+||..+.+.+..+..+ . ......++|+|||++|+++.. ++.|.++| .+++.+.. +.... ++.
T Consensus 97 ~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~ 171 (373)
T 2mad_H 97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYH 171 (373)
T ss_pred CeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEE
Confidence 78999999998887766422 0 133568999999999998874 47899999 99988877 65322 244
Q ss_pred EccCC-CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeE---E
Q 010324 357 FTNDG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV---V 432 (513)
Q Consensus 357 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~ 432 (513)
+.|++ ..+++.+.||.+.++|. +++......................+.+++..++++. ..+.+.+.|..+.. .
T Consensus 172 ~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~ 249 (373)
T 2mad_H 172 IHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNK 249 (373)
T ss_pred EEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEe
Confidence 55655 45667778999999999 8776643221110011111112334555554444444 67899999986432 2
Q ss_pred EEeecCc-------cCCCcEEEEEECCCCCEEEEEec----------CceEEEEECCCceeeEeeecccCCeEEEEEcCC
Q 010324 433 KSFSSGK-------REGGDFVAACVSPKGEWIYCVGE----------DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 495 (513)
Q Consensus 433 ~~~~~~~-------~~~~~~~~~~~s~~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~ 495 (513)
..+.... ........++++|+++.++++.. ++.|.++|..+++.+..+... ....+++|+||
T Consensus 250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~D 328 (373)
T 2mad_H 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQD 328 (373)
T ss_pred eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCC
Confidence 2221100 00122334788999998888653 358999999999999888643 46889999999
Q ss_pred CC-EEEEEE-CCCeEEeccC
Q 010324 496 RN-LLATYG-EDCTMKLWKP 513 (513)
Q Consensus 496 ~~-~l~s~~-~dg~i~iWdp 513 (513)
|+ .++++. .++.|.+||+
T Consensus 329 g~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 329 GGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred CCeEEEEEcCCCCeEEEEEC
Confidence 99 777777 5899999984
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=5.9e-15 Score=135.92 Aligned_cols=240 Identities=12% Similarity=0.107 Sum_probs=172.8
Q ss_pred cccCceeEEEECCCCC-EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 010324 211 GTKSHAECARFSPDGQ-FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 289 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~-~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 289 (513)
.+.....+++|+|+|+ +++++..++.|. .|+..++ ...+ ..+...+.+++++|+|+++++...++.|.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~-~~~~~~~--~~~~--------~~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTW-AWSDDGQ--LSPE--------MHPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEE-EEETTSC--EEEE--------ESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEE-EEECCCC--eEEE--------ECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 4556678999999998 788888899995 9998876 2222 22567799999999999887776678999
Q ss_pred EEEcCCcceeeeccc---ccccCeEEEEEccCCCEEEE----ee-------------CCCcEEEEecCCCceeeEecccc
Q 010324 290 VWRIRSGQCLRRLER---AHSEGVTSLVFSRDGSQILS----TS-------------FDSTARIHGLKSGKLLKEFRGHS 349 (513)
Q Consensus 290 vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~ 349 (513)
+||..+++....... .....+..++++|+|+++++ |+ ..+.|..++.. ++ ...+..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~ 171 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDR 171 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCC
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCC
Confidence 999988875433221 11235678999999998887 33 13466666654 44 33444455
Q ss_pred cceeEEEEccCCCEEEEEeCCCcEEEEeCC-CCce---eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEE
Q 010324 350 SYVNDAIFTNDGSRVVTASSDCTVKVWDLK-STDC---LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM 425 (513)
Q Consensus 350 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~ 425 (513)
..+..++|+|+++.+++.+.++.|.+||+. ++.. ...+ . .....+..+++.+++ .++++. ++.|.+|
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-----~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-----VEPGKTDGLRVDAGG-LIWASA--GDGVHVL 242 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-----CSSSCCCSEEEBTTS-CEEEEE--TTEEEEE
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-----CCCCCCCeEEECCCC-CEEEEc--CCeEEEE
Confidence 667899999999988777778999999987 4543 2233 1 133456778999887 555544 8899999
Q ss_pred EccCeEEEEeecCccCCCcEEEEEE-CCCCCEEEEEecCceEEEEECCCceee
Q 010324 426 TLQGQVVKSFSSGKREGGDFVAACV-SPKGEWIYCVGEDRNLYCFSHQSGKLE 477 (513)
Q Consensus 426 d~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~g~~dg~i~iwd~~~~~~~ 477 (513)
+..++.+..+.... . +.+++| +|+++.|++++.+ .++.++..+.++.
T Consensus 243 ~~~g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 243 TPDGDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp CTTSCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred CCCCCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 99988777665432 2 678888 6899999998865 5666777666544
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.73 E-value=2.5e-15 Score=136.40 Aligned_cols=236 Identities=9% Similarity=-0.018 Sum_probs=167.9
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeE
Q 010324 266 TVLCIEFSRDSEMLA-SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE 344 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 344 (513)
...+++++++|++++ +.+.++.|.+||..++... .+.......+.++++.++|+.+++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence 788999999998666 4467889999997655432 22223345678899999998655555 88999999865543 33
Q ss_pred ec-ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEE
Q 010324 345 FR-GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 423 (513)
Q Consensus 345 ~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 423 (513)
+. .....+.+++++++|+.+++...++.|.+|+..+........ .....+..+++.+++ .++++...++.|.
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~------~~~~~p~~i~~~~~g-~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF------TGLNDPDGVAVDNSG-NVYVTDTDNNRVV 174 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC------CSCCSCCCEEECTTC-CEEEEEGGGTEEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc------ccCCCceeEEEeCCC-CEEEEECCCCEEE
Confidence 32 223568899999999977777778899999866544322111 122356788999877 6777777788999
Q ss_pred EEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEE
Q 010324 424 IMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 424 i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 503 (513)
+|+..+......... ....+..++++++|...++...++.|.+|+............+...+.+++++|+|+++++..
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 175 KLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp EECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG
T ss_pred EEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC
Confidence 999986554433221 125578999999997777777789999999876554433333446789999999999888888
Q ss_pred CCCeEEeccC
Q 010324 504 EDCTMKLWKP 513 (513)
Q Consensus 504 ~dg~i~iWdp 513 (513)
.+++|+++++
T Consensus 253 ~~~~v~~~~~ 262 (270)
T 1rwi_B 253 GNDRVVKLTS 262 (270)
T ss_dssp GGTEEEEECC
T ss_pred CCCEEEEEcC
Confidence 9999999874
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=1e-14 Score=145.09 Aligned_cols=272 Identities=13% Similarity=0.125 Sum_probs=194.9
Q ss_pred CCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC--Ccceee
Q 010324 223 PDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR--SGQCLR 300 (513)
Q Consensus 223 ~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~ 300 (513)
|.+.++++...++.|. ++|..+++.+..+. ....+..+.|+|||+++++++.|+.|.+||+. +++.+.
T Consensus 165 ~~~~~~V~~~~~~~V~-viD~~t~~v~~~i~---------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~ 234 (567)
T 1qks_A 165 LENLFSVTLRDAGQIA-LIDGSTYEIKTVLD---------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 234 (567)
T ss_dssp GGGEEEEEETTTTEEE-EEETTTCCEEEEEE---------CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred CCceEEEEeCCCCeEE-EEECCCCeEEEEEe---------CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE
Confidence 4556777888899995 99999988776554 23456799999999999999999999999995 788877
Q ss_pred ecccccccCeEEEEEc----cCCCEEEEeeC-CCcEEEEecCCCceeeEeccc-----------ccceeEEEEccCCCEE
Q 010324 301 RLERAHSEGVTSLVFS----RDGSQILSTSF-DSTARIHGLKSGKLLKEFRGH-----------SSYVNDAIFTNDGSRV 364 (513)
Q Consensus 301 ~~~~~~~~~v~~~~~~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l 364 (513)
++. .......++|+ |||+++++++. ++.|.++|..+.+.+..+... ...+..+..++++..+
T Consensus 235 ~i~--~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~ 312 (567)
T 1qks_A 235 EIK--IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF 312 (567)
T ss_dssp EEE--CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred EEe--cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEE
Confidence 775 23456899999 69999887765 589999999999888776532 1257788888876654
Q ss_pred -EEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeec-Cc-c
Q 010324 365 -VTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSS-GK-R 440 (513)
Q Consensus 365 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~-~~-~ 440 (513)
+....+|.|.++|..+......... ........+.|+|++..+++++..++.|.++|.. ++....+.. .. .
T Consensus 313 vv~~~~~g~v~~vd~~~~~~~~v~~i-----~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P 387 (567)
T 1qks_A 313 IVNVKETGKILLVDYTDLNNLKTTEI-----SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP 387 (567)
T ss_dssp EEEETTTTEEEEEETTCSSEEEEEEE-----ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred EEEecCCCeEEEEecCCCccceeeee-----eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence 4455679999999887543222111 1123456788999986666777788999999998 444444444 22 2
Q ss_pred CCCcEEEEEECCCCCEEEEEe--cCceEEEEECCC-------ceeeEeeecccCCeEEEEEcCCCCEEEEEEC-------
Q 010324 441 EGGDFVAACVSPKGEWIYCVG--EDRNLYCFSHQS-------GKLEHLMKVHEKDVIGVTHHPHRNLLATYGE------- 504 (513)
Q Consensus 441 ~~~~~~~~~~s~~~~~l~~g~--~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~------- 504 (513)
+.+.-.. .++|++..+++.+ .++.|.++|..+ .+.+..+......-..+..+|+++++.....
T Consensus 388 hpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~ 466 (567)
T 1qks_A 388 HPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEI 466 (567)
T ss_dssp CCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHH
T ss_pred CCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCccc
Confidence 2211112 2588755555443 568999999987 5677777765444345778999998887652
Q ss_pred CCeEEecc
Q 010324 505 DCTMKLWK 512 (513)
Q Consensus 505 dg~i~iWd 512 (513)
.++|.++|
T Consensus 467 ~~~v~v~d 474 (567)
T 1qks_A 467 SGSVAVFD 474 (567)
T ss_dssp HTCEEEEE
T ss_pred CceEEEEE
Confidence 35788876
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.72 E-value=3.3e-16 Score=161.98 Aligned_cols=246 Identities=14% Similarity=0.035 Sum_probs=166.3
Q ss_pred cccCceeEEEECCCCCEEEE-----EecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC
Q 010324 211 GTKSHAECARFSPDGQFLVS-----CSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~-----g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 285 (513)
+|...+.+++|||||++||. |+.+..|+ +||+.+++..... .+. ......++|+|||+.|+.++.|
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~-v~dl~tg~~~~~~------~~~--~~~~~~~~wspDg~~l~~~~~d 188 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLH-VIDVDSGEWSKVD------VIE--GGKYATPKWTPDSKGFYYEWLP 188 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEE-EEETTTCCBCSSC------CBS--CCTTCCCEECTTSSEEEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEE-EEECCCCCCcCCc------ccC--cccccceEEecCCCEEEEEEec
Confidence 45567899999999999994 44456896 9999998754110 011 1112678999999999999887
Q ss_pred Cc-------------EEEEEcCCccee--eecc-cccccCeEEEEEccCCCEEEEeeCCC----cEEEEecCCCceeeEe
Q 010324 286 GK-------------IKVWRIRSGQCL--RRLE-RAHSEGVTSLVFSRDGSQILSTSFDS----TARIHGLKSGKLLKEF 345 (513)
Q Consensus 286 g~-------------i~vwd~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~ 345 (513)
.. |++|++.++... ..+. ..+...+..+.|+|||++|+.++.++ .|++|+..+++ ...+
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l 267 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLL 267 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEE
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEe
Confidence 76 999999887632 2221 13446788999999999998887666 67777765554 3444
Q ss_pred cccccceeEEEEccCCCEEEEEeC----CCcEEEEeCCCCce--eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC
Q 010324 346 RGHSSYVNDAIFTNDGSRVVTASS----DCTVKVWDLKSTDC--LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT 419 (513)
Q Consensus 346 ~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 419 (513)
..+...+....+ ++|. ++..+. ++.|.+||+.++.. ...+... .....+..+.++ +..++++...+
T Consensus 268 ~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~l~~~~~~--~~~lv~~~~~d 339 (695)
T 2bkl_A 268 VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE----DSSASLLSVSIV--GGHLSLEYLKD 339 (695)
T ss_dssp EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC----CSSCEEEEEEEE--TTEEEEEEEET
T ss_pred ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecC----CCCCeEEEEEEE--CCEEEEEEEEC
Confidence 445555666666 5666 544443 58899999987653 1222211 113467778887 33778888888
Q ss_pred CcEEEEEcc--CeEEEEeecCccCCCcEEEEEECCCCCEEEEEe----cCceEEEEECCCcee
Q 010324 420 SSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG----EDRNLYCFSHQSGKL 476 (513)
Q Consensus 420 ~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----~dg~i~iwd~~~~~~ 476 (513)
+..++|.++ +.....+... ..+.+..++++|+++.++... ..+.|++||+.+++.
T Consensus 340 g~~~l~~~~~~g~~~~~l~~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 340 ATSEVRVATLKGKPVRTVQLP--GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TEEEEEEEETTCCEEEECCCS--SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CEEEEEEEeCCCCeeEEecCC--CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 887777654 5555444321 234566778899998777443 357899999988764
No 193
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.72 E-value=3.2e-15 Score=141.11 Aligned_cols=234 Identities=16% Similarity=0.177 Sum_probs=156.0
Q ss_pred CceeEEEECCCCCEEEEEecC---Ce--EEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC---
Q 010324 214 SHAECARFSPDGQFLVSCSFD---GF--IEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD--- 285 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~d---g~--i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--- 285 (513)
..+.+++|||||++||.++.+ +. | ++|++.+++...... +.. +.+++|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l-~~~~~~~g~~~~l~~---------~~~-~~~~~wspdg~~l~~~~~~~~~ 127 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEI-WVADLETLSSKKILE---------AKN-IRSLEWNEDSRKLLIVGFKRRE 127 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEE-EEEETTTTEEEEEEE---------ESE-EEEEEECTTSSEEEEEEECCCC
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceE-EEEECCCCceEEEEc---------CCC-ccceeECCCCCEEEEEEccCCC
Confidence 457889999999999988754 33 6 377777765432211 334 9999999999999988642
Q ss_pred ------------------------CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCC-------cEEEE
Q 010324 286 ------------------------GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS-------TARIH 334 (513)
Q Consensus 286 ------------------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~i~ 334 (513)
..|.+||+.+++.+..+. . . .+..++|+||| .+++++.++ ...+|
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~-~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~ 203 (347)
T 2gop_A 128 DEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE-K-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIY 203 (347)
T ss_dssp ---------CCCC---------CEEEEEEEETTTTEEEEEEE-E-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEE
T ss_pred cCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec-C-C-CcccccCCCCe-EEEEEecccccccccccccEE
Confidence 579999999887645554 2 3 78899999999 777776542 33444
Q ss_pred ecCCCceeeEecccccceeEEEEccCCCEEEEEeCC--------CcEEEEeCCCCceeEeecCCCCCCCCCceeeE-EEe
Q 010324 335 GLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD--------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNS-VHL 405 (513)
Q Consensus 335 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-~~~ 405 (513)
.+.+++ ...+..+ ..+..+ +|+|++|+.++.+ ..|.+|| +++...... .+...+.. +.|
T Consensus 204 ~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~------~~~~~~~~~~~~ 271 (347)
T 2gop_A 204 IWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD------EVDRGVGQAKIK 271 (347)
T ss_dssp EEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST------TCCSEEEEEEEE
T ss_pred EeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc------cCCcccCCccEE
Confidence 444444 3344334 444444 9999998887754 3688888 554332221 34556776 888
Q ss_pred cCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceE-EEEECCCceeeEeeeccc
Q 010324 406 FPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNL-YCFSHQSGKLEHLMKVHE 484 (513)
Q Consensus 406 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i-~iwd~~~~~~~~~~~~h~ 484 (513)
+ ++ ++++++.++.+++| +.......+.. ....+..++++| .++++++.++.. .+|.+. ++ ...+..|.
T Consensus 272 s-dg--~~~~~~~~~~~~l~-~~~g~~~~~~~---~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n 340 (347)
T 2gop_A 272 D-GK--VYFTLFEEGSVNLY-IWDGEIKPIAK---GRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYN 340 (347)
T ss_dssp T-TE--EEEEEEETTEEEEE-EESSSEEEEEC---SSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTT
T ss_pred c-Cc--EEEEEecCCcEEEE-EcCCceEEEec---CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEecccc
Confidence 8 54 88888999999999 76322333332 245688899999 677777766654 666655 54 33455554
Q ss_pred C
Q 010324 485 K 485 (513)
Q Consensus 485 ~ 485 (513)
.
T Consensus 341 ~ 341 (347)
T 2gop_A 341 D 341 (347)
T ss_dssp S
T ss_pred H
Confidence 3
No 194
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.72 E-value=1.5e-14 Score=135.62 Aligned_cols=255 Identities=14% Similarity=0.126 Sum_probs=173.4
Q ss_pred eeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC
Q 010324 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 284 (513)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 284 (513)
...+. ++...+.+++|+|+|++++++..++.|. +||..+++..... ..+...+.+++|+|+|++++++..
T Consensus 37 ~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~i~-~~d~~~~~~~~~~--------~~~~~~~~~i~~~~dg~l~v~~~~ 106 (333)
T 2dg1_A 37 WLEIS-KKGLQLEGLNFDRQGQLFLLDVFEGNIF-KINPETKEIKRPF--------VSHKANPAAIKIHKDGRLFVCYLG 106 (333)
T ss_dssp EEEEE-SSCCCEEEEEECTTSCEEEEETTTCEEE-EECTTTCCEEEEE--------ECSSSSEEEEEECTTSCEEEEECT
T ss_pred eEEEe-ccCccccCcEECCCCCEEEEECCCCEEE-EEeCCCCcEEEEe--------eCCCCCcceEEECCCCcEEEEeCC
Confidence 33444 5566779999999999888888899995 9998877643221 125678999999999988777766
Q ss_pred C----CcEEEEEcCCcceeeecc-cccccCeEEEEEccCCCEEEEeeC------CCcEEEEecCCCceeeEeccccccee
Q 010324 285 D----GKIKVWRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQILSTSF------DSTARIHGLKSGKLLKEFRGHSSYVN 353 (513)
Q Consensus 285 d----g~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~ 353 (513)
+ +.|.+||..++.....+. ......+.+++++|+|+.+++... .+.|..+|..+++... +......+.
T Consensus 107 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ 185 (333)
T 2dg1_A 107 DFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVAN 185 (333)
T ss_dssp TSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEE
T ss_pred CCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCccc
Confidence 6 689999988776543322 124467899999999987776653 3567777765554433 222334578
Q ss_pred EEEEccCCCEEEEE-eCCCcEEEEeCCC-CceeEeecC--CCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC
Q 010324 354 DAIFTNDGSRVVTA-SSDCTVKVWDLKS-TDCLQTFKP--PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG 429 (513)
Q Consensus 354 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~-~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 429 (513)
.++|+|+|+.++.+ +.++.|.+||+.+ +.....+.. .....+ ...+..+++.+++ .++++...++.|.+||..+
T Consensus 186 ~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 186 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTC-CEEEEEETTTEEEEECTTS
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCC-CEEEEEcCCCEEEEECCCC
Confidence 89999999866544 5678999999964 332221110 000011 1467789999887 6777777788999999987
Q ss_pred eEEEEeecCcc---CCCcEEEEEECCCCCEEEEEecCc------eEEEEECC
Q 010324 430 QVVKSFSSGKR---EGGDFVAACVSPKGEWIYCVGEDR------NLYCFSHQ 472 (513)
Q Consensus 430 ~~~~~~~~~~~---~~~~~~~~~~s~~~~~l~~g~~dg------~i~iwd~~ 472 (513)
.....+..... +...+..++|+|+++.|++++.++ .|+.++..
T Consensus 264 ~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 264 YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 77666654321 111467899999988887776553 45555543
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.71 E-value=8.2e-15 Score=132.96 Aligned_cols=242 Identities=8% Similarity=-0.055 Sum_probs=171.4
Q ss_pred ceeEEEECCCCCEEE-EEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010324 215 HAECARFSPDGQFLV-SCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI 293 (513)
Q Consensus 215 ~v~~~~~s~~g~~la-~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~ 293 (513)
...+++++++|++++ +.+.++.|. .|+..++..... . ..+...+.+++++++|+++++.. ++.|.+||.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~-~~~~~~~~~~~~-~-------~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~ 94 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVV-KLATGSTGTTVL-P-------FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAA 94 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEE-EECC-----EEC-C-------CCSCCSCCCEEECTTCCEEEEET-TTEEEEECT
T ss_pred CccceEECCCCCEEEEccCCCCcEE-EecCCCcccceE-e-------eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeC
Confidence 678899999999777 547788895 898765432211 0 11335678899999998666555 889999997
Q ss_pred CCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcE
Q 010324 294 RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTV 373 (513)
Q Consensus 294 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 373 (513)
..... ..+.......+..+++.++|+.+++...++.|.+|+..+.............+.+++++++|+.+++...++.|
T Consensus 95 ~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 95 GSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp TCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEE
T ss_pred CCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEE
Confidence 75543 33322333678999999999877777778899999865554333222333467899999999977777778899
Q ss_pred EEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCC
Q 010324 374 KVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPK 453 (513)
Q Consensus 374 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~ 453 (513)
.+||........... .....+..+++.+++ .++++...++.|..|+..+........ .....+..++++++
T Consensus 174 ~~~~~~~~~~~~~~~------~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~--~~~~~p~~i~~~~~ 244 (270)
T 1rwi_B 174 VKLEAESNNQVVLPF------TDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPF--TGLNTPLAVAVDSD 244 (270)
T ss_dssp EEECTTTCCEEECCC------SSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEECCC--CSCSCEEEEEECTT
T ss_pred EEEecCCCceEeecc------cCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcceeecc--CCCCCceeEEECCC
Confidence 999988765433211 122567889999987 777777788999999998654433221 12245789999999
Q ss_pred CCEEEEEecCceEEEEECCCcee
Q 010324 454 GEWIYCVGEDRNLYCFSHQSGKL 476 (513)
Q Consensus 454 ~~~l~~g~~dg~i~iwd~~~~~~ 476 (513)
|+.+++...++.|++++....+.
T Consensus 245 g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 245 RTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCEEEEECCCCEEEEEcCCCccc
Confidence 99888888999999999876553
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.71 E-value=1.4e-13 Score=126.66 Aligned_cols=279 Identities=11% Similarity=0.083 Sum_probs=196.5
Q ss_pred ccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 212 TKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 212 h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
....+.+++++++|+..++...++.|. +||.. ++... +. +..+...+.++++.++|...++...++.|..|
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~-~~~~~-~~~~~-~~------~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~ 88 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKIS-SLDQS-GRIKE-FE------VPTPDAKVMCLIVSSLGDIWFTENGANKIGKL 88 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEE-EECTT-SCEEE-EE------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEE-EECCC-CceEE-EE------CCCCCCcceeEEECCCCCEEEEecCCCeEEEE
Confidence 345788999999999888877789995 99977 54332 11 11234678999999999877776667889999
Q ss_pred EcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceee-EecccccceeEEEEccCCCEEEEEeCC
Q 010324 292 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK-EFRGHSSYVNDAIFTNDGSRVVTASSD 370 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d 370 (513)
|.. ++............+.++++.++|..+++...++.|..+|.. ++... .+......+.++++.++|+..++...+
T Consensus 89 d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 166 (300)
T 2qc5_A 89 SKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQN 166 (300)
T ss_dssp CTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred CCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCC
Confidence 977 654322211234678999999999887777778899999986 55442 233344568899999999976666667
Q ss_pred CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEE
Q 010324 371 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACV 450 (513)
Q Consensus 371 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 450 (513)
+.|..||. +++... +..+ .....+..+++.+++ .++++....+.|..++..+........ .....+..+++
T Consensus 167 ~~i~~~~~-~g~~~~-~~~~----~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~--~~~~~~~~i~~ 237 (300)
T 2qc5_A 167 NSIGRITN-TGKLEE-YPLP----TNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTTGEISEYDIP--TPNARPHAITA 237 (300)
T ss_dssp TEEEEECT-TCCEEE-EECS----STTCCEEEEEECTTS-SEEEEETTTTEEEEECTTCCEEEEECS--STTCCEEEEEE
T ss_pred CeEEEECC-CCcEEE-eeCC----CCCCCcceEEECCCC-CEEEEccCCCEEEEEcCCCcEEEEECC--CCCCCceEEEE
Confidence 88999998 555433 3221 223467889998876 666666677889999986554332221 22455789999
Q ss_pred CCCCCEEEEEecCceEEEEECCCceeeE-eeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 451 SPKGEWIYCVGEDRNLYCFSHQSGKLEH-LMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 451 s~~~~~l~~g~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+++|+..++...++.|..||. +++... .+......+.++++.++|.++++.. . .|..+||
T Consensus 238 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 238 GKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 999986666667799999998 454432 2333446688999999998776655 4 6776665
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.71 E-value=7.3e-15 Score=136.94 Aligned_cols=276 Identities=12% Similarity=0.062 Sum_probs=188.2
Q ss_pred EECCCCCEEEEEec-----CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEe----------C
Q 010324 220 RFSPDGQFLVSCSF-----DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS----------Q 284 (513)
Q Consensus 220 ~~s~~g~~la~g~~-----dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~ 284 (513)
...|+++.+++... ++.|. +.|..+++.+..+.. ...+ . ++++|||+++++++ .
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~-ViD~~t~~v~~~I~v--------G~~P-~-va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQF-VIDGEAGRVIGMIDG--------GFLP-N-PVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEE-EEETTTTEEEEEEEE--------CSSC-E-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEE-EEECCCCeEEEEEEC--------CCCC-c-EEECCCCCEEEEEcccccccccCCC
Confidence 34688888888765 67895 999999888766642 2333 4 99999999888775 3
Q ss_pred CCcEEEEEcCCcceeeeccccc------ccCeEEEEEccCCCEEEEeeC--CCcEEEEecCCCceeeEecccccceeEEE
Q 010324 285 DGKIKVWRIRSGQCLRRLERAH------SEGVTSLVFSRDGSQILSTSF--DSTARIHGLKSGKLLKEFRGHSSYVNDAI 356 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 356 (513)
++.|.+||..+++.+.++..+. ......++|+|||++++++.. ++.|.++|+.+++.+.++..... ...
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~ 184 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHI 184 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEE
T ss_pred CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---cee
Confidence 6789999999999888775321 124567999999999998864 68999999999999988864321 222
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCC-CceeEeecCCCCCCCCCcee-eEEEecCCCCCeEEEEcCCCcEEEEEccCeEE--
Q 010324 357 FTNDGSRVVTASSDCTVKVWDLKS-TDCLQTFKPPPPLRGGDASV-NSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV-- 432 (513)
Q Consensus 357 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-- 432 (513)
+....+.+++.+.||.+.+.++.+ ++...+.... ......++ ....|.+.++.+++ .+.+|.+++.|..+...
T Consensus 185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~--~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v 261 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV--FHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF 261 (386)
T ss_dssp EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC--CSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE
T ss_pred ecCCCceeEEECCCCCEEEEECCCCCeEEEeecce--eccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee
Confidence 333456777888999999999976 5543322111 11111122 22344433323344 55589999999975432
Q ss_pred -EEeecC-------ccCCCcEEEEEECCCCCEEEEEec----------CceEEEEECCCceeeEeeecccCCeEEEEEcC
Q 010324 433 -KSFSSG-------KREGGDFVAACVSPKGEWIYCVGE----------DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494 (513)
Q Consensus 433 -~~~~~~-------~~~~~~~~~~~~s~~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p 494 (513)
..+... .........++++++++.++.... .+.|.++|..+++.+..+... ..+.+++++|
T Consensus 262 ~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~ 340 (386)
T 3sjl_D 262 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQ 340 (386)
T ss_dssp CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECS
T ss_pred ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECC
Confidence 222100 000111224677899998888753 257999999999999888753 3788999999
Q ss_pred CCC-EEEEE-ECCCeEEeccC
Q 010324 495 HRN-LLATY-GEDCTMKLWKP 513 (513)
Q Consensus 495 ~~~-~l~s~-~~dg~i~iWdp 513 (513)
|++ +|+++ ..++.|.++|+
T Consensus 341 D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 341 DEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp SSSCEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEEcCCCCeEEEEEC
Confidence 986 66665 45899999884
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=8.7e-15 Score=136.66 Aligned_cols=255 Identities=15% Similarity=0.075 Sum_probs=178.4
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI 293 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~ 293 (513)
.....+.+. +++..++...++.|. +||..+++.+..+. .......++++++++..++...++.|.+||.
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~-viD~~t~~~~~~i~---------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~ 112 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIF-AIDINTFKEVGRIT---------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINP 112 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEE-EEETTTCCEEEEEE---------CCSSEEEEEEEETTEEEEEEBSCSEEEEEET
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEE-EEECcccEEEEEcC---------CCCCCcEEEEeCCCeEEEEECCCCeEEEEEC
Confidence 345677774 355556666689996 99999988766553 3467889999999854444447899999999
Q ss_pred CCcceeeecccccc----cCeEEEEEccCCCEEEEee--CCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEE
Q 010324 294 RSGQCLRRLERAHS----EGVTSLVFSRDGSQILSTS--FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 294 ~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 367 (513)
.+++....+..+.. .....+++ ++..++++. .++.|.++|+.+++.+..+... .....+.++|+|++++++
T Consensus 113 ~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~ 189 (328)
T 3dsm_A 113 KTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTIT 189 (328)
T ss_dssp TTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEB
T ss_pred CCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEE
Confidence 99987776652221 14556777 345555555 4889999999999888877643 346788999999877766
Q ss_pred eCC----------CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeec
Q 010324 368 SSD----------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSS 437 (513)
Q Consensus 368 ~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 437 (513)
..+ +.|.++|..+++....+..+. ......++++|++ ..++++.. .|.++|.....+.....
T Consensus 190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-----g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~~~ 261 (328)
T 3dsm_A 190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-----GDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPVRPF 261 (328)
T ss_dssp CCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-----TCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCSSCS
T ss_pred CCCccCCccccCCceEEEEECCCCeEEEEEecCC-----CCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceeeeee
Confidence 554 789999999988776665321 2367899999987 56666554 89999987443321111
Q ss_pred CccCCCcEEEEEECCC-CCEEEEE----ecCceEEEEECCCceeeEeeecccCCeEEEEE
Q 010324 438 GKREGGDFVAACVSPK-GEWIYCV----GEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTH 492 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~-~~~l~~g----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 492 (513)
.......+..++++|+ +...++. ..++.|.+||.. ++.+..+... .....++|
T Consensus 262 ~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 262 LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 1111356788999994 5555555 578999999998 8888887643 33456665
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.68 E-value=7.3e-15 Score=153.00 Aligned_cols=275 Identities=15% Similarity=0.115 Sum_probs=170.8
Q ss_pred CCCCEEEEEecCCe---EEEEEeccc-----cccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC-----CcEE
Q 010324 223 PDGQFLVSCSFDGF---IEVVWDYLS-----GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD-----GKIK 289 (513)
Q Consensus 223 ~~g~~la~g~~dg~---i~~iwd~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----g~i~ 289 (513)
|+|++++....++. - .+|.... +.....+. +...-.+|...+..++|||||++|+.++.+ ..|+
T Consensus 116 pdG~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~lld--~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQS-QLLVRPADAPVGTKGRVLLD--PNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp EETTEEEEEEECSSCSSC-EEEEEETTSCTTCCCEEEEC--GGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred EECCEEEEEEEcCCCeEE-EEEEEcCCccCCCCCEEEEC--HHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 77887776654432 3 2665542 22111111 111112344578899999999999987654 3699
Q ss_pred EEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCc--------------EEEEecCCCc----eeeEecccccc
Q 010324 290 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDST--------------ARIHGLKSGK----LLKEFRGHSSY 351 (513)
Q Consensus 290 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------------i~i~d~~~~~----~~~~~~~~~~~ 351 (513)
+||+.+++.+.... +...+..++|+|| +.|+.++.++. |++|++.++. .+.....+...
T Consensus 193 v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 193 FVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR 269 (741)
T ss_dssp EEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred EEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence 99999998754321 2222357899999 99998887654 8999987765 22222333345
Q ss_pred eeEEEEccCCCEEEEEeCCC-----cEEEEeCCCC--ceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC---CCc
Q 010324 352 VNDAIFTNDGSRVVTASSDC-----TVKVWDLKST--DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK---TSS 421 (513)
Q Consensus 352 v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---~~~ 421 (513)
+.++.|+|||++|+..+.++ .|.+||+.++ ++...+... ....... ++|++..+++.... ++.
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~------~~~~~~~-~~~dg~~l~~~s~~~~~~~~ 342 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD------LKAQWDF-VDGVGDQLWFVSGDGAPLKK 342 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS------SSSCEEE-EEEETTEEEEEECTTCTTCE
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC------CCceEEE-EeccCCEEEEEECCCCCCCE
Confidence 88999999999988877544 7999999876 313333321 1122233 23666344444432 356
Q ss_pred EEEEEccC--eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECC-CceeeEeeec-ccCCeEEEEEcCCCC
Q 010324 422 IYIMTLQG--QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ-SGKLEHLMKV-HEKDVIGVTHHPHRN 497 (513)
Q Consensus 422 i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~-h~~~v~~~~~~p~~~ 497 (513)
|++||+.+ .....+.... ...+..++++ ++.++++...|+..++|.+. ++.....+.. +.+.+..+.++|++.
T Consensus 343 l~~~d~~~~~~~~~~l~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~ 419 (741)
T 1yr2_A 343 IVRVDLSGSTPRFDTVVPES--KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDR 419 (741)
T ss_dssp EEEEECSSSSCEEEEEECCC--SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCS
T ss_pred EEEEeCCCCccccEEEecCC--CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCC
Confidence 99999875 3444444332 2345567776 56677888888887766554 4555555554 356788999999887
Q ss_pred EEE-EEE---CCCeEEeccC
Q 010324 498 LLA-TYG---EDCTMKLWKP 513 (513)
Q Consensus 498 ~l~-s~~---~dg~i~iWdp 513 (513)
.++ +.+ ..++|.+||.
T Consensus 420 ~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 420 HAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp CEEEEEEETTEEEEEEEEET
T ss_pred EEEEEEcCCCCCCEEEEEEC
Confidence 555 322 3477888873
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.67 E-value=5.4e-14 Score=130.57 Aligned_cols=240 Identities=11% Similarity=0.109 Sum_probs=166.6
Q ss_pred CccEEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCcceeeecc---cccccCeEEEEEccC-CCEEEEeeCCCcEE
Q 010324 264 DETVLCIEFSRDSEMLAS-------GSQDGKIKVWRIRSGQCLRRLE---RAHSEGVTSLVFSRD-GSQILSTSFDSTAR 332 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s-------~~~dg~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~ 332 (513)
-....+++|+++|..+++ +..++.|.+||..+++...... .++...+.+++++++ ++ +.+++..+.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEE
Confidence 345679999999987777 5678899999988877543221 014467899999999 65 44444455799
Q ss_pred EEecCCCceeeE-ecc----cccceeEEEEccCCCEEEEEeCC---------------CcEEEEeCCCCceeEeecCCCC
Q 010324 333 IHGLKSGKLLKE-FRG----HSSYVNDAIFTNDGSRVVTASSD---------------CTVKVWDLKSTDCLQTFKPPPP 392 (513)
Q Consensus 333 i~d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~ 392 (513)
+||.. ++.... ... ....+.+++++++|+.+++...+ +.|..||.. ++......
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~---- 169 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT---- 169 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE----
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc----
Confidence 99987 665433 221 12458899999999877776654 567888765 54333221
Q ss_pred CCCCCceeeEEEec----CCCCCeEEEEcCCCcEEEEEcc--CeE--EEEeecCccCC-CcEEEEEECCCCCEEEEEecC
Q 010324 393 LRGGDASVNSVHLF----PKNPDHIVVCNKTSSIYIMTLQ--GQV--VKSFSSGKREG-GDFVAACVSPKGEWIYCVGED 463 (513)
Q Consensus 393 ~~~~~~~v~~~~~~----~~~~~~l~~~~~~~~i~i~d~~--~~~--~~~~~~~~~~~-~~~~~~~~s~~~~~l~~g~~d 463 (513)
.......++++ |++..++++...++.|.+|+.. +.. ...+....... ..+..++++++|++.++...+
T Consensus 170 ---~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 170 ---AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp ---EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred ---CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 12245778888 8764455555678999999976 321 11222212122 457789999999988888788
Q ss_pred ceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEE-EEEECCCeEEeccC
Q 010324 464 RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLL-ATYGEDCTMKLWKP 513 (513)
Q Consensus 464 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~~~dg~i~iWdp 513 (513)
+.|.+||..+++.+..+..+...+.+++++|+++.| ++...++.|..|++
T Consensus 247 ~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 999999998788777777777889999999999944 45556678888874
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=3.3e-13 Score=124.21 Aligned_cols=239 Identities=12% Similarity=0.053 Sum_probs=172.6
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 342 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 342 (513)
+...+.+++++++|...++...++.|.+||.. ++............+.++++.++|..+++...++.|..||.. ++..
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 90 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIK 90 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEE
Confidence 45689999999999977766667899999987 554332211245679999999999887777778899999975 4321
Q ss_pred -eEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc
Q 010324 343 -KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 421 (513)
Q Consensus 343 -~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 421 (513)
.........+.+++++++|..+++...++.|..||. +++.... ... .....+..+++.+++ .++++...++.
T Consensus 91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~-~~~----~~~~~~~~i~~~~~g-~l~v~~~~~~~ 163 (299)
T 2z2n_A 91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREY-ELP----NKGSYPSFITLGSDN-ALWFTENQNNA 163 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECS----STTCCEEEEEECTTS-CEEEEETTTTE
T ss_pred EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEe-cCC----CCCCCCceEEEcCCC-CEEEEeCCCCE
Confidence 122224456889999999988887777889999998 5544322 211 123467889999876 67777777889
Q ss_pred EEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEe-eecccCCeEEEEEcCCCCEEE
Q 010324 422 IYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHL-MKVHEKDVIGVTHHPHRNLLA 500 (513)
Q Consensus 422 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~ 500 (513)
|..+|..+... .+... .....+..++++++|++.++...++.|.+||. +++.... ...+...+.++++++++++++
T Consensus 164 i~~~~~~g~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v 240 (299)
T 2z2n_A 164 IGRITESGDIT-EFKIP-TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWF 240 (299)
T ss_dssp EEEECTTCCEE-EEECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred EEEEcCCCcEE-EeeCC-CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEE
Confidence 99999954433 33221 22345789999999997777667889999999 6664432 233456789999999999777
Q ss_pred EEECCCeEEeccC
Q 010324 501 TYGEDCTMKLWKP 513 (513)
Q Consensus 501 s~~~dg~i~iWdp 513 (513)
+...++.|..|||
T Consensus 241 ~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 241 TEWGANKIGRLTS 253 (299)
T ss_dssp EETTTTEEEEEET
T ss_pred eccCCceEEEECC
Confidence 7667788998875
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.65 E-value=6.4e-14 Score=133.07 Aligned_cols=272 Identities=11% Similarity=0.088 Sum_probs=186.4
Q ss_pred CCCCEEEEEecC-----CeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEe----------CCCc
Q 010324 223 PDGQFLVSCSFD-----GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS----------QDGK 287 (513)
Q Consensus 223 ~~g~~la~g~~d-----g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~dg~ 287 (513)
++++.+++.... +.|. +.|..+++.+..+.. ...+ .++++|||++++++. .++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~Vs-VID~~t~~vv~~I~v--------G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~ 150 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQF-VIDGSTGRILGMTDG--------GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDY 150 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEE-EEETTTTEEEEEEEE--------CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEE-EEECCCCEEEEEEEC--------CCCC--ceEECCCCCEEEEEeccccccccCCCCCE
Confidence 355555555432 6885 999999988876653 2334 899999999888876 3678
Q ss_pred EEEEEcCCcceeeecccc------cccCeEEEEEccCCCEEEEeeC--CCcEEEEecCCCceeeEecccccceeEEEEcc
Q 010324 288 IKVWRIRSGQCLRRLERA------HSEGVTSLVFSRDGSQILSTSF--DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 359 (513)
Q Consensus 288 i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 359 (513)
|.++|..+++.+.++..+ .......++|+|||++++++.. ++.|.+.|+.+++.+.++..... ....|
T Consensus 151 VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p 226 (426)
T 3c75_H 151 VEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFP 226 (426)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEE
T ss_pred EEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeecc
Confidence 999999999988877532 1233567899999999999874 57899999999999888764221 23344
Q ss_pred CC-CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCce-eeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeec
Q 010324 360 DG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDAS-VNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSS 437 (513)
Q Consensus 360 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 437 (513)
++ ..+++.+.||.+.+.+..+++...... ........+ ...+.+.+++ ..++..+..+.+.+.|..+........
T Consensus 227 ~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~--~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~ 303 (426)
T 3c75_H 227 ASPTVFYMNCRDGSLARVDFADGETKVTNT--EVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATFRAP 303 (426)
T ss_dssp EETTEEEEEETTSSEEEEECCTTCCEEEEC--CCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEECCC
T ss_pred CCCcEEEEEcCCCCEEEEECCCCcEEEEee--eeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEEeee
Confidence 33 566777788888888886665443211 000011111 1234567776 444455667899999997543332211
Q ss_pred Cc-------cC---CCcEEEEEECCCCCEEEEEec----------CceEEEEECCCceeeEeeecccCCeEEEEEcCCCC
Q 010324 438 GK-------RE---GGDFVAACVSPKGEWIYCVGE----------DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN 497 (513)
Q Consensus 438 ~~-------~~---~~~~~~~~~s~~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~ 497 (513)
.. .. ......++++|+++.+++... ++.|.++|..+.+.+..+.... ...++.|+||++
T Consensus 304 ~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~ 382 (426)
T 3c75_H 304 IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAE 382 (426)
T ss_dssp EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSS
T ss_pred eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCC
Confidence 00 00 011113689999998887753 4579999999999999887543 588999999998
Q ss_pred -EEEEEE-CCCeEEeccC
Q 010324 498 -LLATYG-EDCTMKLWKP 513 (513)
Q Consensus 498 -~l~s~~-~dg~i~iWdp 513 (513)
+++++. .++.|.++|+
T Consensus 383 ~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 383 PLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp CEEEEEETTTTEEEEEET
T ss_pred EEEEEEcCCCCeEEEEEC
Confidence 888887 5899999984
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.64 E-value=4.3e-13 Score=128.76 Aligned_cols=241 Identities=11% Similarity=0.102 Sum_probs=171.7
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCC--cEEEEecCCCcee
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS--TARIHGLKSGKLL 342 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~ 342 (513)
.....|+|+|+++++++...++.|++||..++....... .. .... ++|+|+++.|+++..++ .|.+++...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~-~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP-GF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE-TC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec-cC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 468899999999977777777899999998777654443 22 2233 99999999999988766 7999998766543
Q ss_pred eEe----cccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCcee--eEEEecCCCCCeEEEE
Q 010324 343 KEF----RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASV--NSVHLFPKNPDHIVVC 416 (513)
Q Consensus 343 ~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~ 416 (513)
..+ ......+.+++++|++..|+++..++.|+.||..++... .+..... .+..... ..++++|.+..++++.
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~-~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLEL-SGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCC-CSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccc-cCCCCCCccccEEEeCCCCEEEEEe
Confidence 333 224456889999995555666777899999999877532 2210000 0111111 3899999765777777
Q ss_pred cCCCcEEEEEccCeEEEEeecCc------------cCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeecc
Q 010324 417 NKTSSIYIMTLQGQVVKSFSSGK------------REGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVH 483 (513)
Q Consensus 417 ~~~~~i~i~d~~~~~~~~~~~~~------------~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h 483 (513)
..++.|+.|+.++.... +.... ..-.....++++++|+++++-. .++.|+.|+..++... .+.++
T Consensus 286 ~~~~~I~~~~~~g~~~~-~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~ 363 (409)
T 3hrp_A 286 QNLSSVYKITPDGECEW-FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQ 363 (409)
T ss_dssp TTTTEEEEECTTCCEEE-EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEEC
T ss_pred CCCCEEEEEecCCCEEE-EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCC
Confidence 88899999999876332 22211 0013478999999999777777 8899999998787654 33333
Q ss_pred ---------------cCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 484 ---------------EKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 484 ---------------~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
-.....++++|++.++++-..+++|+.++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 24588999999988888888888888764
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.63 E-value=4.8e-14 Score=146.84 Aligned_cols=245 Identities=14% Similarity=0.112 Sum_probs=163.9
Q ss_pred cccCceeEEEECCCCCEEEEEecC-----CeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFD-----GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~d-----g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 285 (513)
+|...+..++|||||++||.++.+ ..|+ +||+.+++...... +...+..++|+|| +.|+.++.+
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~-v~dl~tg~~~~~~~---------~~~~~~~~~wspD-~~l~~~~~~ 228 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVK-FVGVADGKPLADEL---------KWVKFSGLAWLGN-DALLYSRFA 228 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEE-EEETTTCCEEEEEE---------EEEESCCCEESTT-SEEEEEECC
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE-EEECCCCCCCCccC---------CCceeccEEEECC-CEEEEEEec
Confidence 444568899999999999987654 3585 99999987643210 1222357899999 999988876
Q ss_pred Cc--------------EEEEEcCCccee--eecc-cccccCeEEEEEccCCCEEEEeeCCC-----cEEEEecCCC--ce
Q 010324 286 GK--------------IKVWRIRSGQCL--RRLE-RAHSEGVTSLVFSRDGSQILSTSFDS-----TARIHGLKSG--KL 341 (513)
Q Consensus 286 g~--------------i~vwd~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~ 341 (513)
+. |++|++.++... ..+. ..+...+..+.|+|||++|+..+.++ .|++||+.++ +.
T Consensus 229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 229 EPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp CC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred CcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence 54 899999876531 2222 12233588999999999998877544 8999999876 31
Q ss_pred eeEecccccceeEEEEccCCCEEEEEeCC----CcEEEEeCCCCc-eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE
Q 010324 342 LKEFRGHSSYVNDAIFTNDGSRVVTASSD----CTVKVWDLKSTD-CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 342 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 416 (513)
...+..+...+... ++|+|+.|+..+.+ +.|.+||+.++. ....+.+ .+...+..+.+. +..++++.
T Consensus 309 ~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-----~~~~~l~~~~~~--~~~lv~~~ 380 (741)
T 1yr2_A 309 VTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-----ESKDNLESVGIA--GNRLFASY 380 (741)
T ss_dssp CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-----CCSSEEEEEEEE--BTEEEEEE
T ss_pred cEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-----CCCCeEEEEEEE--CCEEEEEE
Confidence 44554444444444 34889988887764 459999998752 3233322 223356667776 43677888
Q ss_pred cCCCcEEEEEc--cCeEEEEeecCccCCCcEEEEEECCCCCEEEEEe----cCceEEEEECCCcee
Q 010324 417 NKTSSIYIMTL--QGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG----EDRNLYCFSHQSGKL 476 (513)
Q Consensus 417 ~~~~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----~dg~i~iwd~~~~~~ 476 (513)
..++..++|.+ .+.....+... ..+.+..++++|+++.++... ..+.|+.||+.+++.
T Consensus 381 ~~dg~~~l~~~~~~g~~~~~l~~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 381 IHDAKSQVLAFDLDGKPAGAVSLP--GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EETTEEEEEEEETTSCEEEECBCS--SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EECCEEEEEEEeCCCCceeeccCC--CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 88887666654 46655554321 245677889999988665332 457899999988763
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.60 E-value=6.8e-12 Score=115.38 Aligned_cols=239 Identities=12% Similarity=0.053 Sum_probs=172.4
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee
Q 010324 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 342 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 342 (513)
....+.++++.++|...++...++.|.+||.. ++............+.++++.+++...++...++.|..+|.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 45678999999999977777678999999987 554332111234678999999999877777668899999987 5543
Q ss_pred e-EecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc
Q 010324 343 K-EFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 421 (513)
Q Consensus 343 ~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 421 (513)
. ........+.++++.++|+.+++...++.|..||.. ++... +... .....+..+++.+++ .++++...++.
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~----~~~~~~~~i~~d~~g-~l~v~~~~~~~ 168 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-YDLP----NKGSYPAFITLGSDN-ALWFTENQNNS 168 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-EECS----STTCCEEEEEECTTS-SEEEEETTTTE
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-ccCC----CCCCCceeEEECCCC-CEEEEecCCCe
Confidence 2 222234568899999999888877778899999987 55432 2211 123467889999877 56666666889
Q ss_pred EEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEe-eecccCCeEEEEEcCCCCEEE
Q 010324 422 IYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHL-MKVHEKDVIGVTHHPHRNLLA 500 (513)
Q Consensus 422 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~ 500 (513)
|..++..+.... +.. ......+..++++++|.+.++....+.|.+|+. +++.... +..+...+.++++++++++++
T Consensus 169 i~~~~~~g~~~~-~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v 245 (300)
T 2qc5_A 169 IGRITNTGKLEE-YPL-PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWF 245 (300)
T ss_dssp EEEECTTCCEEE-EEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred EEEECCCCcEEE-eeC-CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEE
Confidence 999998655443 322 122346789999999987777767789999998 5554332 333456789999999998777
Q ss_pred EEECCCeEEeccC
Q 010324 501 TYGEDCTMKLWKP 513 (513)
Q Consensus 501 s~~~dg~i~iWdp 513 (513)
+...++.|..|++
T Consensus 246 ~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 246 TEWGANQIGRITN 258 (300)
T ss_dssp EETTTTEEEEECT
T ss_pred eccCCCeEEEECC
Confidence 7766788998875
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.60 E-value=2.8e-14 Score=133.66 Aligned_cols=184 Identities=12% Similarity=0.078 Sum_probs=138.2
Q ss_pred ceeEEEECCCCCEEEEEecCCeEEEEEeccccccccc---cccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 215 HAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKD---LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
.++.+++++...++++|+.++.+ +|++.+...... ..+++. ....+.. |+.++| |+++|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~--v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAV--VGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEE--EEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEE--EEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 68899999999999999998765 798765441000 001111 1122566 999999 89999999 88999999
Q ss_pred EcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCC
Q 010324 292 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC 371 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 371 (513)
|+.+........ .+..++.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|+|+| ++.|..||
T Consensus 112 dv~sl~~~~~~~-~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg 182 (388)
T 1xip_A 112 DLEELSEFRTVT-SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDR 182 (388)
T ss_dssp ESSSTTCEEEEE-ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTS
T ss_pred EchhhhccCccc-eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCC
Confidence 998766544443 56777888887754 38889999999999998877643 44679999999999 78899999
Q ss_pred cEEEEeCCCCce--eEeecCCCCCC---CCCceeeEEEecCCCCCeEEE
Q 010324 372 TVKVWDLKSTDC--LQTFKPPPPLR---GGDASVNSVHLFPKNPDHIVV 415 (513)
Q Consensus 372 ~i~iwd~~~~~~--~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~ 415 (513)
++++|+...+.. ..++..+.... ++...|.++.|.+++ .++++
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~ 230 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV 230 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence 999999887775 55665443332 367899999999976 55554
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.59 E-value=2.5e-12 Score=118.26 Aligned_cols=227 Identities=11% Similarity=0.059 Sum_probs=156.3
Q ss_pred CccEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCcee
Q 010324 264 DETVLCIEFSRDS-EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 342 (513)
Q Consensus 264 ~~~v~~l~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 342 (513)
..-.-+..|+|++ .++++...++.|..||..++.. ..+ .....+.+++++++|++++ +. ++.|.+||..+++..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~--~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV--TMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE--ECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE--eCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEE
Confidence 3445688899954 4555556688999999987765 333 2456799999999999544 44 578999999877653
Q ss_pred eEecc----cccceeEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecC
Q 010324 343 KEFRG----HSSYVNDAIFTNDGSRVVTASS-----------DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP 407 (513)
Q Consensus 343 ~~~~~----~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (513)
..... ....+++++++|+|+++++... .+.|..+|.. ++...... .....+.++|+|
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~-------~~~~pngi~~sp 158 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD-------QVDISNGLDWSL 158 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE-------EESBEEEEEECT
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEee-------ccccccceEEcC
Confidence 32221 2345889999999997665432 2334444433 33222111 123467899999
Q ss_pred CCCCeEEEEcCCCcEEEEEcc---CeE--EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeec
Q 010324 408 KNPDHIVVCNKTSSIYIMTLQ---GQV--VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV 482 (513)
Q Consensus 408 ~~~~~l~~~~~~~~i~i~d~~---~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 482 (513)
++..++++.+.++.|..|+++ +.. .+.+.........+..++++++|++.++....+.|..||..+++.+..+..
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 985566777788999999973 322 122222222234577899999998887777888999999999999988888
Q ss_pred ccCCeEEEEEc-CCCCEEEEEE
Q 010324 483 HEKDVIGVTHH-PHRNLLATYG 503 (513)
Q Consensus 483 h~~~v~~~~~~-p~~~~l~s~~ 503 (513)
+...+++++|. |+++.|..++
T Consensus 239 p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 239 PVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCCceEEEEeCCCCCEEEEEc
Confidence 87889999998 7877655444
No 208
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.59 E-value=1.1e-11 Score=117.36 Aligned_cols=270 Identities=12% Similarity=0.052 Sum_probs=176.0
Q ss_pred cccccCcccceeeeeccccCceeEEEECCCCCEEEEEe----------cCCeEEEEEeccccccccccccccccccccCC
Q 010324 195 DVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCS----------FDGFIEVVWDYLSGKLKKDLQYQADETFMMHD 264 (513)
Q Consensus 195 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~----------~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~ 264 (513)
.+.+....+...++..+.. - .++|||||++++++. .++.|. +||..+.+....+......... +.
T Consensus 50 ~v~D~~t~~~~~~i~~g~~--p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~-viD~~t~~~~~~i~~~~~~~~~-~g 124 (373)
T 2mad_H 50 WVLDAGSGSILGHVNGGFL--P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVE-VFDPVTFLPIADIELPDAPRFD-VG 124 (373)
T ss_pred EEEECCCCeEEEEecCCCC--C-CeEECCCCCEEEEEeccccccccCCCCCeEE-EEECCCCcEEEEEECCCccccc-cC
Confidence 4455555566666765532 2 899999999999986 367885 9999887766655432000110 11
Q ss_pred ccEEEEEEcCCCCEEEEEeC--CCcEEEEEcCCcceeee-cccccccCeEEEEEccCC-CEEEEeeCCCcEEEEecCCCc
Q 010324 265 ETVLCIEFSRDSEMLASGSQ--DGKIKVWRIRSGQCLRR-LERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGK 340 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~ 340 (513)
.....++|+|||++|+++.. ++.|.++| .+++.+.. +. ... ++.+.|++ ..+++.+.||.+.++|. +++
T Consensus 125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence 33558999999999999874 47899999 99998877 64 222 24455555 45567778999999999 887
Q ss_pred eeeEec-----ccccc-eeEEEEccCCCEEEEEeCCCcEEEEeCCCCce--eEeecCCCC----CCCCCceeeEEEecCC
Q 010324 341 LLKEFR-----GHSSY-VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDC--LQTFKPPPP----LRGGDASVNSVHLFPK 408 (513)
Q Consensus 341 ~~~~~~-----~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~----~~~~~~~v~~~~~~~~ 408 (513)
...... ....+ .....+.+++..++..+.++.+.+.|+.+... ...+..... ..........+.++|+
T Consensus 198 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d 277 (373)
T 2mad_H 198 AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS 277 (373)
T ss_pred EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC
Confidence 664322 11111 22345667666655555788999999976532 222211100 0001122334678888
Q ss_pred CCCeEEEEc---------CCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCC-EEEEEe-cCceEEEEECCCcee
Q 010324 409 NPDHIVVCN---------KTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGE-WIYCVG-EDRNLYCFSHQSGKL 476 (513)
Q Consensus 409 ~~~~l~~~~---------~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~-~dg~i~iwd~~~~~~ 476 (513)
+...+++.. ..+.|.++|.. .+.+..+... .....++|+|||+ .++++. .++.|.++|..+++.
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 744444443 23579999998 4555666432 2477999999999 777777 589999999999998
Q ss_pred eEee
Q 010324 477 EHLM 480 (513)
Q Consensus 477 ~~~~ 480 (513)
+..+
T Consensus 354 v~~i 357 (373)
T 2mad_H 354 DQST 357 (373)
T ss_pred Eeee
Confidence 8774
No 209
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.57 E-value=1.4e-12 Score=121.51 Aligned_cols=289 Identities=15% Similarity=0.173 Sum_probs=186.8
Q ss_pred ccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEe----------cCCeEEEEEeccccccccccccccccccc
Q 010324 192 MKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCS----------FDGFIEVVWDYLSGKLKKDLQYQADETFM 261 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~----------~dg~i~~iwd~~~~~~~~~~~~~~~~~~~ 261 (513)
....+.|....+...++..|... . +++||||+++++++ .++.|. +||..+.+....+........
T Consensus 59 ~~V~ViD~~t~~v~~~I~vG~~P--~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs-viD~~t~~v~~~I~v~~g~r~- 133 (386)
T 3sjl_D 59 TQQFVIDGEAGRVIGMIDGGFLP--N-PVVADDGSFIAHASTVFSRIARGERTDYVE-VFDPVTLLPTADIELPDAPRF- 133 (386)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE-EECTTTCCEEEEEEETTCCCC-
T ss_pred CEEEEEECCCCeEEEEEECCCCC--c-EEECCCCCEEEEEcccccccccCCCCCEEE-EEECCCCeEEEEEECCCcccc-
Confidence 34556677777788888866553 4 99999999988876 367896 999999887766643210000
Q ss_pred cCCccEEEEEEcCCCCEEEEEeC--CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC-
Q 010324 262 MHDETVLCIEFSRDSEMLASGSQ--DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS- 338 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~- 338 (513)
........++|+|||++++++.. ++.|.++|+.+++.+.++... . + ...+....+.+++.+.||.+.+.++.+
T Consensus 134 ~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~ 209 (386)
T 3sjl_D 134 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTE 209 (386)
T ss_dssp CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--S-E-EEEEEEETTEEEEEETTSCEEEEECCSS
T ss_pred ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--C-c-ceeecCCCceeEEECCCCCEEEEECCCC
Confidence 01124557899999999998864 689999999999998888522 1 1 223333456777888899999998876
Q ss_pred CceeeEeccc----ccce-eEEEEc-cCCCEEEEEeCCCcEEEEeCCCCce--eEeecCCCC----CCCCCceeeEEEec
Q 010324 339 GKLLKEFRGH----SSYV-NDAIFT-NDGSRVVTASSDCTVKVWDLKSTDC--LQTFKPPPP----LRGGDASVNSVHLF 406 (513)
Q Consensus 339 ~~~~~~~~~~----~~~v-~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~----~~~~~~~v~~~~~~ 406 (513)
++.......+ ..++ ....|. ++|++++ .+.+|.+.+.|+.+... ...+..... ..-.......+.++
T Consensus 210 g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~ 288 (386)
T 3sjl_D 210 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 288 (386)
T ss_dssp SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred CeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeEC
Confidence 5543221111 1222 224564 5775444 66689999999976542 222210000 00001122346667
Q ss_pred CCCCCeEEEEcC---------CCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCC-EEEEEe-cCceEEEEECCCc
Q 010324 407 PKNPDHIVVCNK---------TSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGE-WIYCVG-EDRNLYCFSHQSG 474 (513)
Q Consensus 407 ~~~~~~l~~~~~---------~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~-~dg~i~iwd~~~~ 474 (513)
+++..++++... .+.|.++|.. .+.+..+... ..+..+++++|++ .|++.. .++.|.++|..++
T Consensus 289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 777444444321 2579999997 5566666553 2467899999997 676655 5899999999999
Q ss_pred eeeEeeecccCCeEEEEEcCC
Q 010324 475 KLEHLMKVHEKDVIGVTHHPH 495 (513)
Q Consensus 475 ~~~~~~~~h~~~v~~~~~~p~ 495 (513)
+.+..+... +..+.+.+++|
T Consensus 365 k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 365 EELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp CEEEEECCC-CSSCCEEEECC
T ss_pred cEEEEecCC-CCCceeEECCc
Confidence 999888643 34455666665
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.55 E-value=4e-12 Score=117.90 Aligned_cols=245 Identities=14% Similarity=0.163 Sum_probs=164.8
Q ss_pred cCceeEEEECCCCCEEEE-------EecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC-CCEEEEEeC
Q 010324 213 KSHAECARFSPDGQFLVS-------CSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-SEMLASGSQ 284 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~-------g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~ 284 (513)
-....+++|+++|+++++ +..++.|. .||..+++...... ....++...+.+++++++ |+++++ +.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~-~~d~~~g~~~~~~~----~~~~~~~~~~~~i~~~~~~g~l~v~-~~ 90 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEIL-RIDLKTGKKTVICK----PEVNGYGGIPAGCQCDRDANQLFVA-DM 90 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEE-EECTTTCCEEEEEC----CEETTEECCEEEEEECSSSSEEEEE-ET
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEE-EEeCCCCcEEEEEe----cccCCCCCCCceEEEecCCCcEEEE-EC
Confidence 345688999999998888 67788995 99987776432110 011124567899999999 664444 44
Q ss_pred CCcEEEEEcCCcceeee-ccc---ccccCeEEEEEccCCCEEEEeeCC---------------CcEEEEecCCCceeeEe
Q 010324 285 DGKIKVWRIRSGQCLRR-LER---AHSEGVTSLVFSRDGSQILSTSFD---------------STARIHGLKSGKLLKEF 345 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~-~~~---~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~ 345 (513)
.+.|.+||.. ++.... ... .....+.++++.++|+..++...+ +.|..||.. ++....
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~- 167 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV- 167 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-
Confidence 5579999988 665433 211 122458899999999887776655 567788765 544332
Q ss_pred cccccceeEEEEc----cCCCEEEEE-eCCCcEEEEeCC-CCcee--EeecCCCCCCCCC-ceeeEEEecCCCCCeEEEE
Q 010324 346 RGHSSYVNDAIFT----NDGSRVVTA-SSDCTVKVWDLK-STDCL--QTFKPPPPLRGGD-ASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 346 ~~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~iwd~~-~~~~~--~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~ 416 (513)
..+......++++ |+++.++.+ ..++.|.+||+. ++... ..+.. ...+. ..+..+++.+++ .++++.
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~---~~~~~~~~p~~i~~d~~G-~l~v~~ 243 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH---IPGTHEGGADGMDFDEDN-NLLVAN 243 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE---CCCCSSCEEEEEEEBTTC-CEEEEE
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE---CCCCCCCCCCceEECCCC-CEEEEE
Confidence 2233456889999 999766555 467899999976 34311 11111 11222 467889999877 777777
Q ss_pred cCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCC
Q 010324 417 NKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQS 473 (513)
Q Consensus 417 ~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~ 473 (513)
..++.|..||.. +.....+... ...+.+++++++|+.|++++ .++.|..|+...
T Consensus 244 ~~~~~i~~~d~~~g~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 244 WGSSHIEVFGPDGGQPKMRIRCP---FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ETTTEEEEECTTCBSCSEEEECS---SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred cCCCEEEEEcCCCCcEeEEEeCC---CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 778899999998 6554444332 35688999999999666554 568999999864
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.53 E-value=7.2e-13 Score=124.51 Aligned_cols=269 Identities=13% Similarity=0.089 Sum_probs=174.5
Q ss_pred CceeEEEECCCCCEEEEEe--cCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC-----CC
Q 010324 214 SHAECARFSPDGQFLVSCS--FDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-----DG 286 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~--~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg 286 (513)
..+..++++|+|+.+++.. .++.++ +|.+.+++.. .+.. ......+|-..+.++++++++++.++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~-l~~~~~g~~~-~~p~-~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQ-VAELTQDGLI-PFPP-QSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCS-EEEEETTEEE-ESCC-CCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceE-EEEECCCCee-cCCC-cccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 5788999999999988864 234344 6665544432 1110 00112246678999999999876655433 57
Q ss_pred cEEEEEcCCcceeeecccc-----cccCeEEEEEccCCCEEEEe-e---CCCcEEEEecCCCceeeEeccccccee-EEE
Q 010324 287 KIKVWRIRSGQCLRRLERA-----HSEGVTSLVFSRDGSQILST-S---FDSTARIHGLKSGKLLKEFRGHSSYVN-DAI 356 (513)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~-~---~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~ 356 (513)
.|.+||+.+++.+..+... +...+..+++++++..++.+ . .++.|.+||+.+++....+..|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 8999999999876665421 22456899999865555444 4 578999999988887766655422111 134
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC-CcEEEEEcc---C-e-
Q 010324 357 FTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-SSIYIMTLQ---G-Q- 430 (513)
Q Consensus 357 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-~~i~i~d~~---~-~- 430 (513)
+.++|..+.+.+.+|.+..|. ..++.++++|++ ..++++... ..++.++.. . .
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~ 232 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQL 232 (343)
T ss_dssp CEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTC
T ss_pred eeECCEEEEeccCCCceecee--------------------cccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCC
Confidence 555677677777777765543 135789999987 555555444 466666542 1 0
Q ss_pred -------EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeec-ccCCeEEEEEcCCCCEEEEE
Q 010324 431 -------VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV-HEKDVIGVTHHPHRNLLATY 502 (513)
Q Consensus 431 -------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~ 502 (513)
.+... ...+....++++++|.+.++...++.|.+||..+++....... +...+.++++.+++.++++.
T Consensus 233 ~~~~~~~~~~~~----g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 233 TDAELGSKIERY----SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp CHHHHHTTCEEE----EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEE
T ss_pred ChhhhhcceEec----ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEe
Confidence 00110 0112345689999999999888999999999866765433332 24568999999999888888
Q ss_pred ECCCeEEe
Q 010324 503 GEDCTMKL 510 (513)
Q Consensus 503 ~~dg~i~i 510 (513)
+..+.+.+
T Consensus 309 ~~~~~~~~ 316 (343)
T 2qe8_A 309 NQLHHSAP 316 (343)
T ss_dssp CCGGGSGG
T ss_pred Cccccccc
Confidence 75555433
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.52 E-value=1.1e-11 Score=119.05 Aligned_cols=244 Identities=10% Similarity=0.021 Sum_probs=164.1
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCC--cEEEE
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG--KIKVW 291 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg--~i~vw 291 (513)
.....++|+++|+++++...++.|+ .||..++....... ...... ++|+|+++.|++++.++ .|.+|
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~-~id~~~g~~~~~~~---------~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~ 199 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVR-LISVDDNKVTTVHP---------GFKGGK-PAVTKDKQRVYSIGWEGTHTVYVY 199 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEE-EEETTTTEEEEEEE---------TCCBCB-CEECTTSSEEEEEBSSTTCEEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEE-EEECCCCEEEEeec---------cCCCCc-eeEecCCCcEEEEecCCCceEEEE
Confidence 4678999999999888888889996 99998776543221 122233 89999999999988766 78888
Q ss_pred EcCCcceeeec---ccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeE----ecccccce--eEEEEccC-C
Q 010324 292 RIRSGQCLRRL---ERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE----FRGHSSYV--NDAIFTND-G 361 (513)
Q Consensus 292 d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v--~~~~~~~~-~ 361 (513)
+...+.....+ .......+.+++++|++..|+++..++.|+.||..++..... ..+....- ..++|+|+ +
T Consensus 200 d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g 279 (409)
T 3hrp_A 200 MKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDS 279 (409)
T ss_dssp EGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTT
T ss_pred EcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCC
Confidence 87766543333 112445678899999555666677788999999987754322 22222222 38999995 5
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCC---------CCceeeEEEecCCCCCeEEEEc-CCCcEEEEEccCeE
Q 010324 362 SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRG---------GDASVNSVHLFPKNPDHIVVCN-KTSSIYIMTLQGQV 431 (513)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~ 431 (513)
..+++-..++.|+.|+.... . ..+.......+ .-.....+++.+++ .++++-. .++.|+.|+.....
T Consensus 280 ~lyv~d~~~~~I~~~~~~g~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 280 NFYMSDQNLSSVYKITPDGE-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEEEETTTTEEEEECTTCC-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTE
T ss_pred EEEEEeCCCCEEEEEecCCC-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCE
Confidence 55666667889999997643 2 22211100000 01347889999987 5777777 88999999965434
Q ss_pred EEEeecCc-c-----------CCCcEEEEEECCCCCEEEEEecCceEEEEEC
Q 010324 432 VKSFSSGK-R-----------EGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 432 ~~~~~~~~-~-----------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 471 (513)
+..+.... . .-.....++++++|.++++-..++.|+.+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 44443320 0 0135788999999887777778888888765
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.51 E-value=3.4e-11 Score=112.16 Aligned_cols=222 Identities=13% Similarity=0.069 Sum_probs=150.3
Q ss_pred EEEEEEcCCCC-EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe
Q 010324 267 VLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF 345 (513)
Q Consensus 267 v~~l~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 345 (513)
..+.+|+|++. .+++...++.|..||..+++.. .+. ....+.+++|+|+|+++++. .+ .|.+||..+++.....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE--CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 45678999754 5556666889999998877643 332 34679999999999876654 34 4999999887754322
Q ss_pred cc----cccceeEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE
Q 010324 346 RG----HSSYVNDAIFTNDGSRVVTASS------DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV 415 (513)
Q Consensus 346 ~~----~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 415 (513)
.. ....+.+++++|+|+++++... .+.|..+| +++... +. ......+.++|+|++..++++
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~------~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LF------ADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EE------EEESSEEEEEECTTSCEEEEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-ee------CCCcccCCeEEcCCCCEEEEE
Confidence 21 1246889999999997665542 24566666 444322 21 111245789999988555566
Q ss_pred EcCCCcEEEEEcc---C-eE--EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEE
Q 010324 416 CNKTSSIYIMTLQ---G-QV--VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG 489 (513)
Q Consensus 416 ~~~~~~i~i~d~~---~-~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 489 (513)
.+.++.|.+|+.. + .. ...+.........+..++++++|.+.++...++.|.+||. +++.+..+..+...+++
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~ 275 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTC 275 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEE
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEE
Confidence 6678899999985 3 21 1122211112345678999999987777767789999998 67777777777778999
Q ss_pred EEEc-CCCCEEEEEE
Q 010324 490 VTHH-PHRNLLATYG 503 (513)
Q Consensus 490 ~~~~-p~~~~l~s~~ 503 (513)
++|+ |++..|+.++
T Consensus 276 ~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 276 PAFIGPDASRLLVTS 290 (326)
T ss_dssp EEEESTTSCEEEEEE
T ss_pred EEEecCCCCEEEEEe
Confidence 9998 8877665444
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.51 E-value=2.2e-12 Score=133.04 Aligned_cols=244 Identities=15% Similarity=0.113 Sum_probs=160.4
Q ss_pred cccCceeEEEECCCCCEEEEEe-----cCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC
Q 010324 211 GTKSHAECARFSPDGQFLVSCS-----FDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~-----~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 285 (513)
+|...+..++|||||++||.+. ....|+ +||+.+++..... + +......++|+ ||+.|+.++.+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~-v~dl~tg~~~~~~-------~--~~~k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIH-LMDVESKQPLETP-------L--KDVKFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEE-EEETTTCSEEEEE-------E--EEEESCCCEEE-TTTEEEEEESS
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEE-EEECCCCCCCccc-------c--CCceeccEEEe-CCCEEEEEEec
Confidence 4556788999999999999643 235685 9999998754321 0 11113567899 99999999877
Q ss_pred Cc-------------EEEEEcCCcce--eeeccc-c-cccCeEEEEEccCCCEEEEeeC----CCcEEEEecCCCc-eee
Q 010324 286 GK-------------IKVWRIRSGQC--LRRLER-A-HSEGVTSLVFSRDGSQILSTSF----DSTARIHGLKSGK-LLK 343 (513)
Q Consensus 286 g~-------------i~vwd~~~~~~--~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~ 343 (513)
.. |++|++.++.. ...+.. . +.....++.|+|||++|+.... ++.|+++|+.++. ...
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~ 274 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL 274 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence 43 99999987653 222221 2 3445788999999998865432 3589999997764 344
Q ss_pred EecccccceeEEEEccCCCEEEEEeC----CCcEEEEeCCCCce--eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc
Q 010324 344 EFRGHSSYVNDAIFTNDGSRVVTASS----DCTVKVWDLKSTDC--LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN 417 (513)
Q Consensus 344 ~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 417 (513)
.+..+....... ++++|..|+..+. .+.|..+|+.++.. ...+.+. ...+. .+++++..++++..
T Consensus 275 ~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~------~~~~~--~~s~~g~~lv~~~~ 345 (693)
T 3iuj_A 275 TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE------RQQVL--TVHSGSGYLFAEYM 345 (693)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC------CSSCE--EEEEETTEEEEEEE
T ss_pred EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC------CCCEE--EEEEECCEEEEEEE
Confidence 555555545444 6666666655543 36799999987654 2233322 12222 67777744555555
Q ss_pred CCC--cEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC----ceEEEEECCCcee
Q 010324 418 KTS--SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED----RNLYCFSHQSGKL 476 (513)
Q Consensus 418 ~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d----g~i~iwd~~~~~~ 476 (513)
.++ .|++|++.+.....+... ..+.+..+.++++++.++....+ +.++.||+.+++.
T Consensus 346 ~~g~~~l~~~d~~g~~~~~l~~p--~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 346 VDATARVEQFDYEGKRVREVALP--GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ETTEEEEEEECTTSCEEEEECCS--SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCeeEEEEEECCCCeeEEeecC--CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 554 688999887766555432 23456677778888877766554 8899999987754
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.50 E-value=1.3e-11 Score=113.92 Aligned_cols=230 Identities=14% Similarity=0.116 Sum_probs=155.6
Q ss_pred CCccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce
Q 010324 263 HDETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 341 (513)
Q Consensus 263 h~~~v~~l~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 341 (513)
+........|+|+|+ +++++..++.|..|+. +++ ...+. .....+..++++++|+.+++...++.|..|+.. ++.
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~-~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLL-DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEE-ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEe-CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence 445677899999998 5666667889999997 454 33443 455678999999999876666566889999985 553
Q ss_pred eeEec---c-cccceeEEEEccCCCEEEE----EeC-------------CCcEEEEeCCCCceeEeecCCCCCCCCCcee
Q 010324 342 LKEFR---G-HSSYVNDAIFTNDGSRVVT----ASS-------------DCTVKVWDLKSTDCLQTFKPPPPLRGGDASV 400 (513)
Q Consensus 342 ~~~~~---~-~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 400 (513)
..... + ....+++++++|+|+..++ |.. .+.|..||..+++..... . ....
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~------~~~p 190 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D------LDHP 190 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E------ESSE
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c------CCCC
Confidence 32211 1 1234778999999998876 332 256888887666543322 1 1245
Q ss_pred eEEEecCCCCCeEEEEcCC------CcEEEEEccCeEEE---EeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEEC
Q 010324 401 NSVHLFPKNPDHIVVCNKT------SSIYIMTLQGQVVK---SFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 471 (513)
+.++|+|++ ..++++... +.|+.|++.+..+. .+... ....+..++++++|+ |++++.+ .|.+|+.
T Consensus 191 ~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 191 NGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS 265 (305)
T ss_dssp EEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSC-EEECCSS-EEEEECT
T ss_pred cceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCC-EEEecCC-cEEEECC
Confidence 789999988 545555443 78999998743221 12111 123345688999999 4455544 5999998
Q ss_pred CCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 472 QSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 472 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
.++.+..+..+. .+.+++|+|+++.|..++.++..++.
T Consensus 266 -~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 266 -DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp -TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred -CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 577777776555 58899999999888888877765553
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.50 E-value=6.8e-12 Score=119.21 Aligned_cols=275 Identities=13% Similarity=0.143 Sum_probs=183.8
Q ss_pred ccccccccCcccceeeeeccccCceeEEEECCCCCEEEEEe----------cCCeEEEEEeccccccccccccccccccc
Q 010324 192 MKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCS----------FDGFIEVVWDYLSGKLKKDLQYQADETFM 261 (513)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~----------~dg~i~~iwd~~~~~~~~~~~~~~~~~~~ 261 (513)
....+.|....+...++..+.. + .++++|||++++++. .++.|. ++|..+.+....+.......+.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~-P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs-viD~~t~~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFL-P--HPVAAEDGSFFAQASTVFERIARGKRTDYVE-VFDPVTFLPIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE-EECTTTCCEEEEEEETTCCCCC
T ss_pred CeEEEEECCCCEEEEEEECCCC-C--ceEECCCCCEEEEEeccccccccCCCCCEEE-EEECCCCcEEEEEECCCccccc
Confidence 3455667777888888887754 3 799999999988886 367896 9999998877665432000000
Q ss_pred cCCccEEEEEEcCCCCEEEEEeC--CCcEEEEEcCCcceeeecccccccCeEEEEEccCC-CEEEEeeCCCcEEEEecCC
Q 010324 262 MHDETVLCIEFSRDSEMLASGSQ--DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKS 338 (513)
Q Consensus 262 ~h~~~v~~l~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~ 338 (513)
.......++|+|||++++++.. ++.|.+.|+.+++.+.++..+. . ....|++ ..+++.+.||.+.+.+..+
T Consensus 175 -~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---~--~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 175 -VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---C--YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp -BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E--EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred -cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---c--eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 1123457899999999999874 5789999999999888876321 1 2333433 5566677788888888755
Q ss_pred CceeeE----ecccccc-eeEEEEccCCCEEEEEeCCCcEEEEeCCCCcee--EeecCCCCCC-C---CCceeeEEEecC
Q 010324 339 GKLLKE----FRGHSSY-VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCL--QTFKPPPPLR-G---GDASVNSVHLFP 407 (513)
Q Consensus 339 ~~~~~~----~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~-~---~~~~v~~~~~~~ 407 (513)
++.... +.....+ ...+.+.+++..++..+..+.+.+.|....... ..+....... . .......+.++|
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~ 328 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR 328 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence 554422 2111112 224568999988888888899999998765422 1111100000 0 011122367888
Q ss_pred CCCCeEEEEc---------CCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCC-EEEEEe-cCceEEEEECCCce
Q 010324 408 KNPDHIVVCN---------KTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGE-WIYCVG-EDRNLYCFSHQSGK 475 (513)
Q Consensus 408 ~~~~~l~~~~---------~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~-~dg~i~iwd~~~~~ 475 (513)
++...+++.. .++.|.++|.. .+.+..+.... ....+.|+|||+ .+++.. .++.|.++|..+++
T Consensus 329 dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 329 QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH----EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 8744444432 13579999998 55666665432 467899999999 888888 59999999999999
Q ss_pred eeEee
Q 010324 476 LEHLM 480 (513)
Q Consensus 476 ~~~~~ 480 (513)
.+..+
T Consensus 405 vv~tI 409 (426)
T 3c75_H 405 ELRSV 409 (426)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99886
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.50 E-value=6.1e-13 Score=137.21 Aligned_cols=235 Identities=15% Similarity=0.141 Sum_probs=154.1
Q ss_pred CCccEEEEEEcCCCCEEEEEe-----CCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCc-------
Q 010324 263 HDETVLCIEFSRDSEMLASGS-----QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDST------- 330 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------- 330 (513)
|...+..++|||||++||.+. ....|++||+.+|+.+.... .......++|+ ||+.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 556788999999999988543 22579999999998654321 11113568899 9999999887743
Q ss_pred ------EEEEecCCCc----eeeEecc-cccceeEEEEccCCCEEEEEeC----CCcEEEEeCCCCc-eeEeecCCCCCC
Q 010324 331 ------ARIHGLKSGK----LLKEFRG-HSSYVNDAIFTNDGSRVVTASS----DCTVKVWDLKSTD-CLQTFKPPPPLR 394 (513)
Q Consensus 331 ------i~i~d~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~ 394 (513)
|++|++.++. .+..... +...+.++.|+|||++|+.... +..|+++|+.++. ....+...
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~---- 279 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD---- 279 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS----
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC----
Confidence 9999987764 2333333 4445788999999998865443 3589999998763 23333321
Q ss_pred CCCceeeEEEecCCCCCeEEEEcCC---CcEEEEEccCeEE---EEeecCccCCCcEEEEEECCCCCEEEEEec-Cc--e
Q 010324 395 GGDASVNSVHLFPKNPDHIVVCNKT---SSIYIMTLQGQVV---KSFSSGKREGGDFVAACVSPKGEWIYCVGE-DR--N 465 (513)
Q Consensus 395 ~~~~~v~~~~~~~~~~~~l~~~~~~---~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg--~ 465 (513)
....... +++++..+++.+..+ +.|..+++.+... ..+.... ..+. .|++++++|+.... +| .
T Consensus 280 --~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 280 --LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp --SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEEE
T ss_pred --CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCeeE
Confidence 1222222 556665666666554 6789999874322 3333322 2233 88999998887764 43 6
Q ss_pred EEEEECCCceeeEeee-cccCCeEEEEEcCCCCEEEEEECC----CeEEeccC
Q 010324 466 LYCFSHQSGKLEHLMK-VHEKDVIGVTHHPHRNLLATYGED----CTMKLWKP 513 (513)
Q Consensus 466 i~iwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~~d----g~i~iWdp 513 (513)
|++|++..+.. ..+. .+.+.+..+.++|++..++....+ ++|..||.
T Consensus 352 l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 352 VEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp EEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 89999875543 3333 344567788888888766655444 67877763
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.50 E-value=1.3e-12 Score=122.36 Aligned_cols=177 Identities=15% Similarity=0.143 Sum_probs=136.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc---------eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEe
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ---------CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHG 335 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 335 (513)
.+++.+++++...++++|+.+ .+.+|++.+.. ........+.. |+.++| |++.|+++ .++.|++||
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 368999999999999999987 56669976543 11111113556 999999 89999999 789999999
Q ss_pred cCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE
Q 010324 336 LKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV 415 (513)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 415 (513)
+++.........+...+.++.+.+. .+++++.||.|.+||+.++.... ....|.+++|+|.+ +++
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----------~~~~Vs~v~WSpkG---~~v 177 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----------LAQNVTSFDVTNSQ---LAV 177 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----------EEESEEEEEECSSE---EEE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----------ccCCceEEEEcCCc---eEE
Confidence 9887766666677778888877654 38889999999999999877543 23479999999987 788
Q ss_pred EcCCCcEEEEEccCeEE---EEeec------CccCCCcEEEEEECCCCCEEEEEe
Q 010324 416 CNKTSSIYIMTLQGQVV---KSFSS------GKREGGDFVAACVSPKGEWIYCVG 461 (513)
Q Consensus 416 ~~~~~~i~i~d~~~~~~---~~~~~------~~~~~~~~~~~~~s~~~~~l~~g~ 461 (513)
+..||.+++|+..+..+ ..+.. ...+...+.+++|.+++.++++-+
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999999999986663 33421 112457899999999999988744
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.48 E-value=1.7e-11 Score=113.16 Aligned_cols=233 Identities=9% Similarity=0.096 Sum_probs=156.3
Q ss_pred cccCceeEEEECCCCC-EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 010324 211 GTKSHAECARFSPDGQ-FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 289 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~-~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 289 (513)
..........|+|+|+ +++++..++.|. .|+. ++... .+..+...+..++++++|+++++...++.|.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~-~~~~-~g~~~---------~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVL-GWRE-DGTVD---------VLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEE-EEET-TSCEE---------EEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEE-EEeC-CCCEE---------EEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 3445677899999998 666777788895 8987 34321 1122556789999999999666655567899
Q ss_pred EEEcCCcceeeecc---cccccCeEEEEEccCCCEEEE----eeC-------------CCcEEEEecCCCceeeEecccc
Q 010324 290 VWRIRSGQCLRRLE---RAHSEGVTSLVFSRDGSQILS----TSF-------------DSTARIHGLKSGKLLKEFRGHS 349 (513)
Q Consensus 290 vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~ 349 (513)
+|+.. ++...... ......+..+++.|+|+..++ |.. .+.|+.+|..+++..... ..
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~ 187 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL 187 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence 99975 55322211 011234678999999998876 432 256888887667654433 33
Q ss_pred cceeEEEEccCCCEEEEEeCC------CcEEEEeCCCCcee--EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc
Q 010324 350 SYVNDAIFTNDGSRVVTASSD------CTVKVWDLKSTDCL--QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 421 (513)
Q Consensus 350 ~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 421 (513)
...+.++|+|+++.|+.+... +.|.+||+..+... ..+.. ........+++.+++ . +.+++.+ .
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-----~~~~~pdgi~~d~~G-~-lwv~~~~-g 259 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-----VPDGLPDGFCVDRGG-W-LWSSSGT-G 259 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-----CSSSCCCSEEECTTS-C-EEECCSS-E
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-----CCCCCCCeEEECCCC-C-EEEecCC-c
Confidence 457889999999988777665 78999998754311 11111 112345567888876 4 4455544 5
Q ss_pred EEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 422 IYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 422 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
|.+|+..++.+..+.... .+..++|+++++.|+.++.++ ++.++
T Consensus 260 v~~~~~~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 260 VCVFDSDGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp EEEECTTSCEEEEEECSS----CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred EEEECCCCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 999999888777776532 367889999999998888754 44433
No 220
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.46 E-value=9.3e-11 Score=107.66 Aligned_cols=228 Identities=9% Similarity=0.085 Sum_probs=151.9
Q ss_pred cCceeEEEECCC-CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010324 213 KSHAECARFSPD-GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 291 (513)
Q Consensus 213 ~~~v~~~~~s~~-g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vw 291 (513)
..-..+..|+|+ +..+++...++.|. .||..++... .+. ....+.+++++|+|+++++ . ++.|.+|
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~-~~d~~~~~~~-~~~---------~~~~~~~i~~~~dG~l~v~-~-~~~l~~~ 78 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVC-RWDSFTKQVQ-RVT---------MDAPVSSVALRQSGGYVAT-I-GTKFCAL 78 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEE-EEETTTCCEE-EEE---------CSSCEEEEEEBTTSSEEEE-E-TTEEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEE-EEECCCCcEE-EEe---------CCCceEEEEECCCCCEEEE-E-CCeEEEE
Confidence 344568899995 55666677788995 9998876542 111 3567999999999995554 4 5689999
Q ss_pred EcCCcceeeeccc---ccccCeEEEEEccCCCEEEEeeC-----------CCcEEEEecCCCceeeEecccccceeEEEE
Q 010324 292 RIRSGQCLRRLER---AHSEGVTSLVFSRDGSQILSTSF-----------DSTARIHGLKSGKLLKEFRGHSSYVNDAIF 357 (513)
Q Consensus 292 d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 357 (513)
|..+++....... .....+..++++|+|+++++... .+.|+.++. .++.. .+.......+.++|
T Consensus 79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~-~~~~~~~~pngi~~ 156 (297)
T 3g4e_A 79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP-DHHVK-KYFDQVDISNGLDW 156 (297)
T ss_dssp ETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT-TSCEE-EEEEEESBEEEEEE
T ss_pred ECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC-CCCEE-EEeeccccccceEE
Confidence 9988764332211 12245789999999996665432 234444443 23332 23333445788999
Q ss_pred ccCCCEEEE-EeCCCcEEEEeC--CCCcee--EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeE
Q 010324 358 TNDGSRVVT-ASSDCTVKVWDL--KSTDCL--QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQV 431 (513)
Q Consensus 358 ~~~~~~l~~-~~~dg~i~iwd~--~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~ 431 (513)
+|+++.++. .+.++.|.+||+ .++... ..+.. .......+..+++.+++ .+.++....+.|..||.. ++.
T Consensus 157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~---~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK---LEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKR 232 (297)
T ss_dssp CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE---CCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCE
T ss_pred cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE---CCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceE
Confidence 999987654 455788999987 455431 11111 11223467889999887 777777778899999997 777
Q ss_pred EEEeecCccCCCcEEEEEEC-CCCCEEEEEec
Q 010324 432 VKSFSSGKREGGDFVAACVS-PKGEWIYCVGE 462 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~s-~~~~~l~~g~~ 462 (513)
+..+... ...+++++|+ |+++.|++++.
T Consensus 233 ~~~i~~p---~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 233 LQTVKLP---VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECS---SSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEECC---CCCceEEEEeCCCCCEEEEEcC
Confidence 7666543 2458899997 88888777664
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.44 E-value=6e-12 Score=117.64 Aligned_cols=251 Identities=10% Similarity=-0.030 Sum_probs=165.9
Q ss_pred eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCcceeeecccc
Q 010324 236 FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS----------QDGKIKVWRIRSGQCLRRLERA 305 (513)
Q Consensus 236 ~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~ 305 (513)
.+. +.|..+++.+..+.. ...+ .+.++||+++++++. .++.|.+||..+++.+.++..+
T Consensus 47 ~vs-vID~~t~~v~~~i~v--------G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~ 115 (368)
T 1mda_H 47 ENW-VSCAGCGVTLGHSLG--------AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP 115 (368)
T ss_dssp EEE-EEETTTTEEEEEEEE--------CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred eEE-EEECCCCeEEEEEeC--------CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence 785 899999988876653 2334 799999999999886 3688999999999999888532
Q ss_pred c------ccCeEEEEEccCCCEEEEeeC--CCcEEE--EecCCCceeeEecccccceeEEEEccCCC-EEEEEeCCCcEE
Q 010324 306 H------SEGVTSLVFSRDGSQILSTSF--DSTARI--HGLKSGKLLKEFRGHSSYVNDAIFTNDGS-RVVTASSDCTVK 374 (513)
Q Consensus 306 ~------~~~v~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 374 (513)
. ......++++|||++++++.. +..+.+ +|..+ +..+.... . ..+.|+++ .+++.+.||.+.
T Consensus 116 ~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--~--~~~~p~g~~~~~~~~~dg~~~ 188 (368)
T 1mda_H 116 DAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--C--FHIHPGAAATHYLGSCPASLA 188 (368)
T ss_dssp TSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--C--CCCEEEETTEEECCCCTTSCE
T ss_pred CccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--c--eEEccCCCeEEEEEcCCCCEE
Confidence 0 124567999999999999875 457888 99876 44443211 1 12334443 455667788888
Q ss_pred EEeCCC-----CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeE---EEEeecCc----cCC
Q 010324 375 VWDLKS-----TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV---VKSFSSGK----REG 442 (513)
Q Consensus 375 iwd~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~~~~~----~~~ 442 (513)
+.|+.+ ++...... ........+. . .+++ ..++..+. +.+.+.|..+.. ...+.... ...
T Consensus 189 ~vd~~~~~~~~~~v~~~~t--~~i~vg~~P~---~-~~~~-~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~ 260 (368)
T 1mda_H 189 ASDLAAAPAAAGIVGAQCT--GAQNCSSQAA---Q-ANYP-GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADN 260 (368)
T ss_dssp EEECCSSCCCCEECCCCSC--TTSCBCSCCE---E-ETTT-TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTT
T ss_pred EEECccccccCCeEEEEee--eeeeCCCCcc---c-cccC-CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccc
Confidence 889886 33221110 0011112222 2 5555 44444444 999999986432 22221110 000
Q ss_pred ---CcEEEEEECCCCCEEEEEec---------CceEEEEECCCceeeEeeecccCCeEEEEEcCCCC-EEEEEE-CCCeE
Q 010324 443 ---GDFVAACVSPKGEWIYCVGE---------DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN-LLATYG-EDCTM 508 (513)
Q Consensus 443 ---~~~~~~~~s~~~~~l~~g~~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~-~dg~i 508 (513)
.....++++|+++.++++.. ++.+.++|..+++.+..+.... ...+++|+||++ ++++.. .+++|
T Consensus 261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEE
T ss_pred cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeE
Confidence 01112679999999887643 2456699999999998887654 688999999997 566666 59999
Q ss_pred EeccC
Q 010324 509 KLWKP 513 (513)
Q Consensus 509 ~iWdp 513 (513)
.++|+
T Consensus 340 sVID~ 344 (368)
T 1mda_H 340 DIYDA 344 (368)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99984
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.44 E-value=2e-10 Score=106.97 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=149.6
Q ss_pred ceeEEEECCCC-CEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010324 215 HAECARFSPDG-QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI 293 (513)
Q Consensus 215 ~v~~~~~s~~g-~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~ 293 (513)
-..+..|+|++ ..++++..++.|. .||..+++... +. ....+.+++|+|+|+++++. .+ .|.+||.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~-~~d~~~~~~~~-~~---------~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~ 116 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELH-ELHLASGRKTV-HA---------LPFMGSALAKISDSKQLIAS-DD-GLFLRDT 116 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEE-EEETTTTEEEE-EE---------CSSCEEEEEEEETTEEEEEE-TT-EEEEEET
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEE-EEECCCCcEEE-EE---------CCCcceEEEEeCCCeEEEEE-CC-CEEEEEC
Confidence 35678999974 5566666788895 99988765321 11 34579999999999877754 44 4999998
Q ss_pred CCcceeeecccc---cccCeEEEEEccCCCEEEEeeC------CCcEEEEecCCCceeeEecccccceeEEEEccCCCEE
Q 010324 294 RSGQCLRRLERA---HSEGVTSLVFSRDGSQILSTSF------DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRV 364 (513)
Q Consensus 294 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 364 (513)
.+++........ ....+.+++++|+|+.+++... .+.|..++ +++.. .+.........++|+|+++.+
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 117 ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTG 193 (326)
T ss_dssp TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEE
T ss_pred CCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEE
Confidence 887753322111 1245889999999987665432 24566666 45433 332333457789999999876
Q ss_pred EEE-eCCCcEEEEeCC--CC-cee--EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecC
Q 010324 365 VTA-SSDCTVKVWDLK--ST-DCL--QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSG 438 (513)
Q Consensus 365 ~~~-~~dg~i~iwd~~--~~-~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 438 (513)
+.+ +.++.|.+||+. ++ ... ..+... ......+..+++.+++ .+.++...++.|..|+..++....+...
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~---~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~g~~~~~i~~~ 269 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS---TGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNHIARYEVP 269 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC---TTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCCEEEEEECS
T ss_pred EEEECCCCEEEEEEcccccCCcccCceEEEEC---CCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCCCCEEEEEECC
Confidence 555 457889999986 55 311 111110 1123456788888877 6666666678899999987766665532
Q ss_pred ccCCCcEEEEEEC-CCCCEEEEEecC
Q 010324 439 KREGGDFVAACVS-PKGEWIYCVGED 463 (513)
Q Consensus 439 ~~~~~~~~~~~~s-~~~~~l~~g~~d 463 (513)
...+.+++|+ ++++.|++++..
T Consensus 270 ---~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 270 ---GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ---CSBEEEEEEESTTSCEEEEEEBC
T ss_pred ---CCCcEEEEEecCCCCEEEEEecC
Confidence 3458899997 888877666543
No 223
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.39 E-value=6.5e-10 Score=104.25 Aligned_cols=225 Identities=9% Similarity=0.038 Sum_probs=154.1
Q ss_pred CCCCEEEEE-eCCCcEEEEEcCCc----ceeeecc------cccccCeEEEEEccCCCEEEEeeCC------CcEEEEec
Q 010324 274 RDSEMLASG-SQDGKIKVWRIRSG----QCLRRLE------RAHSEGVTSLVFSRDGSQILSTSFD------STARIHGL 336 (513)
Q Consensus 274 ~~~~~l~s~-~~dg~i~vwd~~~~----~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~ 336 (513)
+++++|+.. ..++.|.++|+.+. +..+++. .........+...|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 778877665 45789999999755 4555552 1112345678889999 66665555 78999999
Q ss_pred CCCceeeEecccc---cceeEEEEccCCCEEEEEe-------------------CCCcEEEEeCCCCceeEeecCCCCCC
Q 010324 337 KSGKLLKEFRGHS---SYVNDAIFTNDGSRVVTAS-------------------SDCTVKVWDLKSTDCLQTFKPPPPLR 394 (513)
Q Consensus 337 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 394 (513)
.+++.+.++.... ..-..+.|+|+++.+++.. .+.+|.+||+.+++...++....
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~--- 248 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE--- 248 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT---
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC---
Confidence 9999998886332 2244688899999888875 36889999999988777776431
Q ss_pred CCCceeeEEEe--cCCCCCeEEEEc-----CCCcEEEEEccCeEEEEee---cCcc---------------CCCcEEEEE
Q 010324 395 GGDASVNSVHL--FPKNPDHIVVCN-----KTSSIYIMTLQGQVVKSFS---SGKR---------------EGGDFVAAC 449 (513)
Q Consensus 395 ~~~~~v~~~~~--~~~~~~~l~~~~-----~~~~i~i~d~~~~~~~~~~---~~~~---------------~~~~~~~~~ 449 (513)
.......+.+ +|++...++++. .+++|.+|..++....... .... .......+.
T Consensus 249 -~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 249 -ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp -TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred -CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 1234445555 888855556665 7788888776532111111 0000 023466889
Q ss_pred ECCCCCEEEEEe-cCceEEEEECCC---ceeeEeeeccc--------------CCeEEEEEcCCCCEEEEEE
Q 010324 450 VSPKGEWIYCVG-EDRNLYCFSHQS---GKLEHLMKVHE--------------KDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 450 ~s~~~~~l~~g~-~dg~i~iwd~~~---~~~~~~~~~h~--------------~~v~~~~~~p~~~~l~s~~ 503 (513)
+|+||++|+++. ..+.|.+||+.. .+++..+.... +....++++|||++|+++.
T Consensus 328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999999888 578999999863 34555544321 1368899999999998887
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.39 E-value=6.8e-11 Score=121.09 Aligned_cols=285 Identities=10% Similarity=0.108 Sum_probs=180.9
Q ss_pred CCCEEEEEecCCeEEEEEeccccccccccccccccccccC-C-ccE-EEEEEcCCCCEEEEEeCCCcEEEEEcCCcceee
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMH-D-ETV-LCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLR 300 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h-~-~~v-~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 300 (513)
.+..+++++.++.+. -+|..+|+.+.............+ . ..+ ..++. .+..+++++.|+.|..+|..+|+.+.
T Consensus 69 ~~g~vyv~~~~~~v~-AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVY-ALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp ETTEEEEECGGGCEE-EEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEE-EEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEee
Confidence 366778888888884 899999988776543221110000 0 000 11122 35678888899999999999999887
Q ss_pred ecccc-cccCeEEEEEcc---CCCEEEEee------CCCcEEEEecCCCceeeEecccc---------------------
Q 010324 301 RLERA-HSEGVTSLVFSR---DGSQILSTS------FDSTARIHGLKSGKLLKEFRGHS--------------------- 349 (513)
Q Consensus 301 ~~~~~-~~~~v~~~~~~~---~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~--------------------- 349 (513)
++... +......+..+| ++ .+++++ .+|.|+.||.++|+.+..+....
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 77532 111111111112 44 455554 36899999999999887765210
Q ss_pred ----------cceeEEEEccCCCEEEEEeCCCc-------------------EEEEeCCCCceeEeecCCCC-CCC--CC
Q 010324 350 ----------SYVNDAIFTNDGSRVVTASSDCT-------------------VKVWDLKSTDCLQTFKPPPP-LRG--GD 397 (513)
Q Consensus 350 ----------~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~-~~~--~~ 397 (513)
.....++++|++..++.++.++. |..+|.++|+.+..+..... ... ..
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 01135788998889999888764 99999999999887764311 000 11
Q ss_pred cee--eEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCcc----------------------------------
Q 010324 398 ASV--NSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKR---------------------------------- 440 (513)
Q Consensus 398 ~~v--~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~---------------------------------- 440 (513)
... ..+.+.......++.++.+|.++++|.. |+.+........
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 111 1222211111378889999999999987 555533221110
Q ss_pred --CCCcEEEEEECCCCCEEEEEec---------------------------------------------CceEEEEECCC
Q 010324 441 --EGGDFVAACVSPKGEWIYCVGE---------------------------------------------DRNLYCFSHQS 473 (513)
Q Consensus 441 --~~~~~~~~~~s~~~~~l~~g~~---------------------------------------------dg~i~iwd~~~ 473 (513)
.......++++|+...+++... +|.|+.||+.+
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 0001123688888888887632 38899999999
Q ss_pred ceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 474 GKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 474 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
|+.+..+..+. ++..-.+...+.+++.++.||.++.||+
T Consensus 465 G~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 465 QQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred CCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence 99998887654 3344456667889999999999999984
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.38 E-value=9.5e-11 Score=119.78 Aligned_cols=283 Identities=9% Similarity=0.067 Sum_probs=183.3
Q ss_pred CCEEEEEecCCeEEEEEecccccccccccccccccccc---CCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee
Q 010324 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMM---HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRR 301 (513)
Q Consensus 225 g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 301 (513)
+..+++++.++.+ +-+|..+|+.+............. .......+++ ++..+++++.|+.+..+|..+|+.+.+
T Consensus 77 ~g~vyv~~~~~~v-~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVV-HAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCE-EEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeE-EEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 5567777778888 488998888877655432111000 0000012222 356788889999999999999999887
Q ss_pred cccccc----cCeEE-EEEccCCCEEEEeeC------CCcEEEEecCCCceeeEecccccc-------------------
Q 010324 302 LERAHS----EGVTS-LVFSRDGSQILSTSF------DSTARIHGLKSGKLLKEFRGHSSY------------------- 351 (513)
Q Consensus 302 ~~~~~~----~~v~~-~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~------------------- 351 (513)
+..... ..+.+ ... .+..+++++. +|.|+.+|..+|+.+.++......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 763201 11111 111 2345666553 689999999999998777532211
Q ss_pred -------------eeEEEEccCCCEEEEEeCCC-------------------cEEEEeCCCCceeEeecCCCCCC---CC
Q 010324 352 -------------VNDAIFTNDGSRVVTASSDC-------------------TVKVWDLKSTDCLQTFKPPPPLR---GG 396 (513)
Q Consensus 352 -------------v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~---~~ 396 (513)
...++++|++..++.++.++ .|..+|.++++....+....... ..
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 13578899888888887664 59999999999888776432100 00
Q ss_pred CceeeEEEecCCCC--CeEEEEcCCCcEEEEEcc-CeEEEEeecCccC--------CCc---------------------
Q 010324 397 DASVNSVHLFPKNP--DHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKRE--------GGD--------------------- 444 (513)
Q Consensus 397 ~~~v~~~~~~~~~~--~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~--------~~~--------------------- 444 (513)
.....-+....++. ..+++++.+|.++++|.. ++.+......... ...
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G 391 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYG 391 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccc
Confidence 11111112212332 578889999999999987 6665554422100 000
Q ss_pred ---EEEEEECCCCCEEEEEecC-------------------------------------------ceEEEEECCCceeeE
Q 010324 445 ---FVAACVSPKGEWIYCVGED-------------------------------------------RNLYCFSHQSGKLEH 478 (513)
Q Consensus 445 ---~~~~~~s~~~~~l~~g~~d-------------------------------------------g~i~iwd~~~~~~~~ 478 (513)
...++++|++..+++...+ |.|..||+.+++.+.
T Consensus 392 ~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W 471 (677)
T 1kb0_A 392 AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW 471 (677)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEe
Confidence 1146888998888876532 789999999999988
Q ss_pred eeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 479 LMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 479 ~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+.. ..++....+.+.+.+++.++.||.+++||.
T Consensus 472 ~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 472 SVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp EEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred ecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 8763 344555566677888888999999999984
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.36 E-value=1.9e-14 Score=136.45 Aligned_cols=254 Identities=13% Similarity=0.075 Sum_probs=137.7
Q ss_pred CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecc
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE 303 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 303 (513)
++..+++++.||.+. .||..+|+....... ..+.+..+..++..+++++.||.|+.||..+|+.+....
T Consensus 8 ~~~~v~~gs~dg~v~-a~d~~tG~~~W~~~~----------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLH-AVSKRTGSIKWTLKE----------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEE-EEETTTCCEEEEEEC----------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEE-EEECCCCCEEEEecC----------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 578999999999995 999999988765542 233344455677788888899999999999998766654
Q ss_pred cccccCeE-EEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 010324 304 RAHSEGVT-SLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 382 (513)
Q Consensus 304 ~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 382 (513)
......+. +..+. ++..+++++.|+.|+.||.++|+.+..+..+.. ..++|++..+++++.|+.|+.||.++++
T Consensus 77 ~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 77 FTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp CCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSS
T ss_pred ccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccCCEEEEEecCCEEEEEECCCCC
Confidence 21111110 00111 345788888899999999999998887765432 3456788889999999999999999998
Q ss_pred eeEeecCCCCCCCCCceeeEEEecCCC--CCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEE-EEEECCCCCEE-
Q 010324 383 CLQTFKPPPPLRGGDASVNSVHLFPKN--PDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFV-AACVSPKGEWI- 457 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~-~~~~s~~~~~l- 457 (513)
....+... ......+.++. ...+++++.+|.++.||.. ++.+..... ..++. ..+++++|...
T Consensus 152 ~~W~~~~~--------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~----~~pv~~~~~~~~dg~~~v 219 (369)
T 2hz6_A 152 LRWNATYF--------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY----ASPVVAFYVWQREGLRKV 219 (369)
T ss_dssp CCCEEEEE--------EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC----SSCEEEEEECTTSSCEEE
T ss_pred EEEeEecc--------cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC----CCceEEEEEecCCceEec
Confidence 76554311 11111222211 1467778899999999997 666555542 22333 34456666432
Q ss_pred ---EEEecCceEEEEECCCce----eeEeeecccCCeEEEEEcC--CCCEEEEEECCCeEEecc
Q 010324 458 ---YCVGEDRNLYCFSHQSGK----LEHLMKVHEKDVIGVTHHP--HRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 458 ---~~g~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~p--~~~~l~s~~~dg~i~iWd 512 (513)
+.+ ++.++.+|..+|+ .+..+... +.+ . +| .+..++.++.||.+...+
T Consensus 220 ~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~~-~~~---~-sp~~~~g~lyv~~~~G~l~al~ 276 (369)
T 2hz6_A 220 MHINVA--VETLRYLTFMSGEVGRITKWKYPFP-KET---E-AKSKLTPTLYVGKYSTSLYASP 276 (369)
T ss_dssp CCEEEE--HHHHHHHHHHHHHHHHHHTSCCCCC-CHH---H-HHHHSEEEECBEECSSCEECCE
T ss_pred cceeec--ccceeeeehhcCCcccceeeeeccC-ccc---c-ccccccceEEEecccCCEEecC
Confidence 122 4556777777776 44433321 111 1 22 334566677777776654
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.36 E-value=1.5e-09 Score=103.24 Aligned_cols=273 Identities=9% Similarity=0.081 Sum_probs=170.3
Q ss_pred CCCEEEEEecCCeEEEEEeccccccccccccccccccccC-CccEE-EEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMH-DETVL-CIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRR 301 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h-~~~v~-~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 301 (513)
.+..+++++.++.+. .+|..+|+................ ...+. .+.. ++..++.++.++.|..+|..+|+.+..
T Consensus 52 ~~~~v~~~~~~g~v~-a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 52 ADNVVYAADRAGLVK-ALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp ETTEEEEECTTSEEE-EEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCeEE-EEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 467888888899994 999999987765543211000000 12232 2222 456788888999999999999998776
Q ss_pred cccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccce-----eEEEEccCCCEEEEEeCCCcEEEE
Q 010324 302 LERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV-----NDAIFTNDGSRVVTASSDCTVKVW 376 (513)
Q Consensus 302 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iw 376 (513)
... .......... .+..+++++.++.|..+|..+|+.+.......... ...... +..+++++.++.+..+
T Consensus 129 ~~~-~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 129 TKV-AGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp EEC-SSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred EeC-CCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 652 2111111122 24578888899999999999999887766432211 222222 3568888889999999
Q ss_pred eCCCCceeEeecCCCCCCCC-CceeeEEEecC-CCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCC
Q 010324 377 DLKSTDCLQTFKPPPPLRGG-DASVNSVHLFP-KNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPK 453 (513)
Q Consensus 377 d~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~ 453 (513)
|..+++.............. ...+..+...| .....+++++.++.+..+|.. ++........ ....+.. +
T Consensus 204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-----~~~~~~~--~ 276 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-----SVNDFIV--D 276 (376)
T ss_dssp ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-----CEEEEEE--E
T ss_pred ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-----CCCCceE--E
Confidence 99999988776543210000 00000000011 012678888889999999996 5555444321 1333333 4
Q ss_pred CCEEEEEecCceEEEEECCCceeeEeeec-ccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 454 GEWIYCVGEDRNLYCFSHQSGKLEHLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 454 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+..+++++.+|.++.+|..+++.+..... ....+..... .+..|+.++.+|.|.++|+
T Consensus 277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 277 GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINV 335 (376)
T ss_dssp TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEEC
Confidence 67888899999999999999998876652 2222223333 2467888888999998875
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.34 E-value=1.4e-09 Score=103.58 Aligned_cols=256 Identities=11% Similarity=0.078 Sum_probs=168.5
Q ss_pred CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecc
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE 303 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 303 (513)
++..+++++.++.+. .+|..+|+.......... ....++ . .+..++.++.++.|..+|..+|+.+....
T Consensus 102 ~~~~v~v~~~~g~l~-a~d~~tG~~~W~~~~~~~----~~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~ 170 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVY-ALNTSDGTVAWQTKVAGE----ALSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVN 170 (376)
T ss_dssp ETTEEEEEETTSEEE-EEETTTCCEEEEEECSSC----CCSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eCCEEEEEcCCCEEE-EEECCCCCEEEEEeCCCc----eEcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence 456788888999994 999999987765443110 011111 1 24578888889999999999999887765
Q ss_pred cccccCe------EEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccc----------e-eEEEEccCCCEEEE
Q 010324 304 RAHSEGV------TSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSY----------V-NDAIFTNDGSRVVT 366 (513)
Q Consensus 304 ~~~~~~v------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~ 366 (513)
.. .++ ..... .+..+++++.++.+..+|..+|+.+......... + ..... .+..++.
T Consensus 171 ~~--~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~ 244 (376)
T 3q7m_A 171 LD--MPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFA 244 (376)
T ss_dssp CC--C-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEE
T ss_pred CC--CCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEE
Confidence 21 111 11222 2457888888999999999999988766532110 1 11111 2457888
Q ss_pred EeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcE
Q 010324 367 ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDF 445 (513)
Q Consensus 367 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~ 445 (513)
++.++.+..+|.++++........ ....+... + ..+++++.++.+..+|.. ++......... ....
T Consensus 245 ~~~~g~l~~~d~~tG~~~w~~~~~--------~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~--~~~~ 311 (376)
T 3q7m_A 245 LAYNGNLTALDLRSGQIMWKRELG--------SVNDFIVD--G-NRIYLVDQNDRVMALTIDGGVTLWTQSDLL--HRLL 311 (376)
T ss_dssp ECTTSCEEEEETTTCCEEEEECCC--------CEEEEEEE--T-TEEEEEETTCCEEEEETTTCCEEEEECTTT--TSCC
T ss_pred EecCcEEEEEECCCCcEEeeccCC--------CCCCceEE--C-CEEEEEcCCCeEEEEECCCCcEEEeecccC--CCcc
Confidence 888999999999999887765421 12233332 2 678888889999999987 55554443111 1111
Q ss_pred EEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEE-EEEcCCCCEEEEEECCCeEEeccC
Q 010324 446 VAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG-VTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 446 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
..... .+..|++++.+|.++++|..+++.+.........+.. ... .+..|+.++.||.|..||+
T Consensus 312 ~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 312 TSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp CCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEEC
T ss_pred cCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEeC
Confidence 11222 2568999999999999999999988877654333322 222 2457778889999999875
No 229
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.32 E-value=4.9e-10 Score=104.46 Aligned_cols=262 Identities=16% Similarity=0.111 Sum_probs=173.8
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI 293 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~ 293 (513)
..+.++...++|. |.+++.+ + +.+|. +++....... .........+. +..+..++.++.+..+|.
T Consensus 60 ~~~~~~~~~~~g~-l~v~t~~--l-~~~d~-~g~~~~~~~~--------~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~ 124 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IYFGSDK--V-YAINP-DGTEKWRFDT--------KKAIVSDFTIF--EDILYVTSMDGHLYAINT 124 (330)
T ss_dssp EEEECCEETTTTE-ECCSSCE--E-EEECC-CGGGGGGSCC-------------CCEEEE--TTEEEEECTTSEEEEECT
T ss_pred CcccceEEecCCc-EEEecCc--E-EEECC-CCcEEEEEEC--------CCCcccCceEE--CCEEEEEecCCEEEEEcC
Confidence 3456677777775 4445544 7 48886 5655443332 11112222233 456778888999999998
Q ss_pred CCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcE
Q 010324 294 RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTV 373 (513)
Q Consensus 294 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 373 (513)
. ++...... .....+.++...+++. +..++.++.|..+|.. ++....+......+.++...+++...+ ++ +.|
T Consensus 125 ~-g~~~~~~~-~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l 197 (330)
T 3hxj_A 125 D-GTEKWRFK-TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKV 197 (330)
T ss_dssp T-SCEEEEEE-CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSE
T ss_pred C-CCEEEEEc-CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEE
Confidence 8 77666554 3444556667776765 6667788999999998 887777766666778888888877444 44 779
Q ss_pred EEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCC
Q 010324 374 KVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPK 453 (513)
Q Consensus 374 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~ 453 (513)
..+| .+++........ ...+.++...++ ..+.+++.++.+..++..+.....+..... .+..+.+.++
T Consensus 198 ~~~d-~~g~~~~~~~~~------~~~~~~~~~~~~--g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~---~~~~~~~~~~ 265 (330)
T 3hxj_A 198 YAIN-PDGTEKWNFYAG------YWTVTRPAISED--GTIYVTSLDGHLYAINPDGTEKWRFKTGKR---IESSPVIGNT 265 (330)
T ss_dssp EEEC-TTSCEEEEECCS------SCCCSCCEECTT--SCEEEEETTTEEEEECTTSCEEEEEECSSC---CCSCCEECTT
T ss_pred EEEC-CCCcEEEEEccC------CcceeceEECCC--CeEEEEcCCCeEEEECCCCCEeEEeeCCCC---ccccceEcCC
Confidence 9999 777766655422 234566666654 366777778888888877777666554321 1223455555
Q ss_pred CCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 454 GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 454 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+ .|++++.+|.|+.+|. +++.+..+......+.++...+++.+ ..++.+|.+++..
T Consensus 266 g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 266 D-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYALF 321 (330)
T ss_dssp S-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEEE
T ss_pred C-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEEe
Confidence 5 5777888999999996 77777776655666778888777764 4578899888753
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.31 E-value=6.2e-10 Score=114.00 Aligned_cols=265 Identities=11% Similarity=0.104 Sum_probs=169.0
Q ss_pred CCCEEEEEecCCeEEEEEeccccccccccccc-cccc-cccCCccEEEEEEcCCCCEEEEEe------CCCcEEEEEcCC
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQ-ADET-FMMHDETVLCIEFSRDSEMLASGS------QDGKIKVWRIRS 295 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~-~~~~-~~~h~~~v~~l~~~~~~~~l~s~~------~dg~i~vwd~~~ 295 (513)
++..+++++.|+.+ +.+|..+|+........ .... ......++. .++ .++.++ .+|.|..||..+
T Consensus 120 ~~g~v~v~~~dg~l-~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~t 192 (689)
T 1yiq_A 120 WKGKVYVGVLDGRL-EAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYDAET 192 (689)
T ss_dssp ETTEEEEECTTSEE-EEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTT
T ss_pred ECCEEEEEccCCEE-EEEECCCCCEeeeecCcCCCCCCccccCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEECCC
Confidence 45688899999999 49999999987665432 1000 000111111 144 444443 368999999999
Q ss_pred cceeeeccccc------------------------------ccCeEEEEEccCCCEEEEeeCCCc---------------
Q 010324 296 GQCLRRLERAH------------------------------SEGVTSLVFSRDGSQILSTSFDST--------------- 330 (513)
Q Consensus 296 ~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~l~~~~~dg~--------------- 330 (513)
|+.+.++.... ......+++.|++..+++++.++.
T Consensus 193 G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~ 272 (689)
T 1yiq_A 193 GKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNL 272 (689)
T ss_dssp CCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCT
T ss_pred CcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCce
Confidence 99887664210 011125788898889999887763
Q ss_pred ----EEEEecCCCceeeEeccc--c-------cceeEEEEccCCC---EEEEEeCCCcEEEEeCCCCceeEeecCCCCC-
Q 010324 331 ----ARIHGLKSGKLLKEFRGH--S-------SYVNDAIFTNDGS---RVVTASSDCTVKVWDLKSTDCLQTFKPPPPL- 393 (513)
Q Consensus 331 ----i~i~d~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~- 393 (513)
|..+|.++|+.+..++.. . ..+.......+|+ .++.++.+|.++++|.++|+.+.........
T Consensus 273 y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w 352 (689)
T 1yiq_A 273 FLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSW 352 (689)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred eeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccc
Confidence 999999999998877642 1 1122222223565 7888999999999999999987543322100
Q ss_pred ---------------------CC-----------CCceeeEEEecCCCCCeEEEEcC-----------------------
Q 010324 394 ---------------------RG-----------GDASVNSVHLFPKNPDHIVVCNK----------------------- 418 (513)
Q Consensus 394 ---------------------~~-----------~~~~v~~~~~~~~~~~~l~~~~~----------------------- 418 (513)
.. ....-..++++|.. .++++...
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ 431 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeeccccccccccccccc
Confidence 00 00011235666765 44444311
Q ss_pred ----------------------CCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce
Q 010324 419 ----------------------TSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK 475 (513)
Q Consensus 419 ----------------------~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 475 (513)
+|.+..||+. ++.......... .....++..+..+++|+.||.++.||.++|+
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI----FNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC----ccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 3779999997 666666554322 2223455578899999999999999999999
Q ss_pred eeEeeecccCC-eEEEEEcCCCCEEE
Q 010324 476 LEHLMKVHEKD-VIGVTHHPHRNLLA 500 (513)
Q Consensus 476 ~~~~~~~h~~~-v~~~~~~p~~~~l~ 500 (513)
.+..+....+. -.-+.|..+|+..+
T Consensus 508 ~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 508 KLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceeeeCCCCcccCceEEEECCEEEE
Confidence 99888755332 23466777876443
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.31 E-value=2.6e-09 Score=100.21 Aligned_cols=237 Identities=12% Similarity=0.093 Sum_probs=154.4
Q ss_pred EC--CCCCEEEE-EecCCeEEEEEecccc----cccccccccccccc-ccCCccEEEEEEcCCCCEEEEEeCC------C
Q 010324 221 FS--PDGQFLVS-CSFDGFIEVVWDYLSG----KLKKDLQYQADETF-MMHDETVLCIEFSRDSEMLASGSQD------G 286 (513)
Q Consensus 221 ~s--~~g~~la~-g~~dg~i~~iwd~~~~----~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~d------g 286 (513)
++ +++++|++ |..++.|. +.|+.+. +..+.+.. .... .........+...|+| .++++..+ |
T Consensus 89 ~~~~~~r~~l~v~~l~s~~I~-viD~~t~p~~p~~~k~ie~--~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g 164 (462)
T 2ece_A 89 GKPNIERRFLIVPGLRSSRIY-IIDTKPNPREPKIIKVIEP--EEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPG 164 (462)
T ss_dssp CCTTCCSCEEEEEBTTTCCEE-EEECCSCTTSCEEEEEECH--HHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCC
T ss_pred cCCCccCCEEEEccCCCCeEE-EEECCCCCCCceeeeeech--hhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCC
Confidence 36 78887776 55677884 9998754 23332210 0000 0012245677888999 77766555 7
Q ss_pred cEEEEEcCCcceeeecccccc--cCeEEEEEccCCCEEEEee-------------------CCCcEEEEecCCCceeeEe
Q 010324 287 KIKVWRIRSGQCLRRLERAHS--EGVTSLVFSRDGSQILSTS-------------------FDSTARIHGLKSGKLLKEF 345 (513)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~ 345 (513)
.|.++|..+++.+.++..+.. .--..+.|+|+++.+++.. .+.+|.+||+.+++.+.++
T Consensus 165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 899999999999988863322 1234588899999888885 3689999999998888877
Q ss_pred ccc--ccceeEEEE--ccCCCEEEEEe------CCCcEEEEeCCCCce--eEeecCCC-CCCC-----------CCceee
Q 010324 346 RGH--SSYVNDAIF--TNDGSRVVTAS------SDCTVKVWDLKSTDC--LQTFKPPP-PLRG-----------GDASVN 401 (513)
Q Consensus 346 ~~~--~~~v~~~~~--~~~~~~l~~~~------~dg~i~iwd~~~~~~--~~~~~~~~-~~~~-----------~~~~v~ 401 (513)
... ......+.| +|+++++.+++ .+++|.+|....+.. ...+.... .... ......
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 652 234556656 99999888777 466887776554321 11111010 0000 023578
Q ss_pred EEEecCCCCCeEEEEcCCCcEEEEEcc----CeEEEEeecCc-----------cCCCcEEEEEECCCCCEEEEEe
Q 010324 402 SVHLFPKNPDHIVVCNKTSSIYIMTLQ----GQVVKSFSSGK-----------REGGDFVAACVSPKGEWIYCVG 461 (513)
Q Consensus 402 ~~~~~~~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~-----------~~~~~~~~~~~s~~~~~l~~g~ 461 (513)
.+.+++++..+.++.-..+.|.++|+. .+.+..+..+. ...+....++++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 899999996666677778999999985 23444444431 0112356899999999999998
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.30 E-value=1e-10 Score=109.26 Aligned_cols=278 Identities=13% Similarity=0.023 Sum_probs=174.9
Q ss_pred ccccccCcccceeeeeccccCceeEEEECCCCCEEEEEe----------cCCeEEEEEeccccccccccccccccccccC
Q 010324 194 QDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCS----------FDGFIEVVWDYLSGKLKKDLQYQADETFMMH 263 (513)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~----------~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h 263 (513)
..+.|....+...++..+.. + .+.|+|||++++++. .++.|. +||..+++....+.......+. .
T Consensus 48 vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~Vs-viD~~T~~vv~~I~v~~~~~~~-~ 122 (368)
T 1mda_H 48 NWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVE-VFDPVTFLPIADIELPDAPRFS-V 122 (368)
T ss_dssp EEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEE-EECTTTCCEEEEEEETTSCSCC-B
T ss_pred EEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEE-EEECCCCCEEEEEECCCccccc-c
Confidence 34667777888888887765 3 799999999999886 368896 9999999888776532000000 0
Q ss_pred CccEEEEEEcCCCCEEEEEeC--CCcEEE--EEcCCcceeeecccccccCeEEEEEccCCC-EEEEeeCCCcEEEEecCC
Q 010324 264 DETVLCIEFSRDSEMLASGSQ--DGKIKV--WRIRSGQCLRRLERAHSEGVTSLVFSRDGS-QILSTSFDSTARIHGLKS 338 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 338 (513)
......++++|||++++++.. +..+.+ +|..+ +..+..+ .. ....|+++ .+++.+.||.+.+.|+.+
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~--~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA--SC---FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS--SC---CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC--Cc---eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 123557899999999999875 457888 99877 4444311 11 12334443 445667788888888876
Q ss_pred -----CceeeE----ecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeEeecCCCCC-CCCC---ceeeEE
Q 010324 339 -----GKLLKE----FRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD--CLQTFKPPPPL-RGGD---ASVNSV 403 (513)
Q Consensus 339 -----~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~-~~~~---~~v~~~ 403 (513)
++.... +.....+. . .+++..++..+. +.+.+.|..+.. ....+...... .... .....+
T Consensus 195 ~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 195 APAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp SCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred ccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence 443211 11112232 3 666666666666 899999987543 22222111000 0000 111226
Q ss_pred EecCCCCCeEEEEc---C-----CCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCE-EEEEe-cCceEEEEECC
Q 010324 404 HLFPKNPDHIVVCN---K-----TSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEW-IYCVG-EDRNLYCFSHQ 472 (513)
Q Consensus 404 ~~~~~~~~~l~~~~---~-----~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~g~-~dg~i~iwd~~ 472 (513)
.++|++...+++.. . ++.+.++|.. .+.+..+..+. ....++++|||+. +++.. .++.|.++|..
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~----~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH----DSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC----CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 78998855554444 2 2456699998 44555554322 4778999999985 45555 59999999999
Q ss_pred CceeeEeeecccCCeEEEEEcC
Q 010324 473 SGKLEHLMKVHEKDVIGVTHHP 494 (513)
Q Consensus 473 ~~~~~~~~~~h~~~v~~~~~~p 494 (513)
+++.+..+..... ...+++.+
T Consensus 346 t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 346 SDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp SCEEEEECCCCSC-CCEEECCC
T ss_pred CCcEEEEEECCCC-CCEEEeec
Confidence 9999999876543 44566543
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.29 E-value=1.3e-12 Score=123.75 Aligned_cols=202 Identities=13% Similarity=0.084 Sum_probs=117.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccccc-cee
Q 010324 275 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS-YVN 353 (513)
Q Consensus 275 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~ 353 (513)
++..+++++.||.|..||..+|+.+.++.. ..+.+..+..++..+++++.||.|+.||..+|+.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 577899999999999999999999888762 4455555666787888888999999999999988766654321 111
Q ss_pred -EEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeE
Q 010324 354 -DAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQV 431 (513)
Q Consensus 354 -~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~ 431 (513)
+..+. ++..+++++.|+.++.||.++|+....+.... ....+|.+ ..+++++.++.++.||.. ++.
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----------~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----------ADSLSPST-SLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC---------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----------cccccccC-CEEEEEecCCEEEEEECCCCCE
Confidence 11111 34567888889999999999999877665321 12334543 788888899999999986 544
Q ss_pred EEEeecCccCCCcEEEEEECCCC---CEEEEEecCceEEEEECCCceeeEeeecccCCeE-EEEEcCCCC
Q 010324 432 VKSFSSGKREGGDFVAACVSPKG---EWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI-GVTHHPHRN 497 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~s~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~ 497 (513)
...+.... ....+++.+. ..+++++.+|.|+.||..+|+.+...... .++. ...+++++.
T Consensus 153 ~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 153 RWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-SPVVAFYVWQREGL 216 (369)
T ss_dssp CCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-SCEEEEEECTTSSC
T ss_pred EEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-CceEEEEEecCCce
Confidence 33332211 1122333332 56778889999999999999988877643 3443 344555554
No 234
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.29 E-value=1.1e-09 Score=112.05 Aligned_cols=266 Identities=10% Similarity=0.053 Sum_probs=172.4
Q ss_pred CCCEEEEEecCCeEEEEEeccccccccccccc-cccc-cccCCccEEEEEEcCCCCEEEEEeC------CCcEEEEEcCC
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQ-ADET-FMMHDETVLCIEFSRDSEMLASGSQ------DGKIKVWRIRS 295 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~-~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~------dg~i~vwd~~~ 295 (513)
++..+++++.|+.+ +.+|..+|+........ .... ......++ . .+..+++++. +|.|+.+|..+
T Consensus 127 ~~~~v~v~~~dg~l-~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~----v--~~~~v~v~~~~~~~~~~g~v~a~D~~t 199 (677)
T 1kb0_A 127 WKGKVYVGAWDGRL-IALDAATGKEVWHQNTFEGQKGSLTITGAPR----V--FKGKVIIGNGGAEYGVRGYITAYDAET 199 (677)
T ss_dssp ETTEEEEECTTSEE-EEEETTTCCEEEEEETTTTCCSSCBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTT
T ss_pred ECCEEEEEcCCCEE-EEEECCCCCEEeeecCCcCcCcCcccccCcE----E--ECCEEEEEecccccCCCCEEEEEECCC
Confidence 46788899999999 49999999987665432 0000 00011111 1 2345555543 68999999999
Q ss_pred cceeeeccccccc-------------------------------CeEEEEEccCCCEEEEeeCCC---------------
Q 010324 296 GQCLRRLERAHSE-------------------------------GVTSLVFSRDGSQILSTSFDS--------------- 329 (513)
Q Consensus 296 ~~~~~~~~~~~~~-------------------------------~v~~~~~~~~~~~l~~~~~dg--------------- 329 (513)
|+.+.++...... ....+++.|++..+++++.++
T Consensus 200 G~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~ 279 (677)
T 1kb0_A 200 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDN 279 (677)
T ss_dssp CCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred CcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCC
Confidence 9988776521111 113578889888999887664
Q ss_pred ----cEEEEecCCCceeeEecccc---------cceeEEEEccCC---CEEEEEeCCCcEEEEeCCCCceeEeecCCCCC
Q 010324 330 ----TARIHGLKSGKLLKEFRGHS---------SYVNDAIFTNDG---SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPL 393 (513)
Q Consensus 330 ----~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 393 (513)
.|..+|.++|+.+..++... .....+....+| ..++.++.+|.++++|.++|+.+..+......
T Consensus 280 ~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 359 (677)
T 1kb0_A 280 LYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN 359 (677)
T ss_dssp TTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred eeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC
Confidence 59999999999988776421 112223333467 67899999999999999999988766532210
Q ss_pred C-----CCC------------------------ceeeEEEecCCCCCeEEEEcC--------------------------
Q 010324 394 R-----GGD------------------------ASVNSVHLFPKNPDHIVVCNK-------------------------- 418 (513)
Q Consensus 394 ~-----~~~------------------------~~v~~~~~~~~~~~~l~~~~~-------------------------- 418 (513)
. ... ..-..++++|+. .++++...
T Consensus 360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 438 (677)
T 1kb0_A 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT 438 (677)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeChhcceeeeccccccccccccccccccc
Confidence 0 000 001245677766 45554322
Q ss_pred -----------------CCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEee
Q 010324 419 -----------------TSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM 480 (513)
Q Consensus 419 -----------------~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 480 (513)
.+.|..||+. ++.+....... ......+..++..+++++.||.+++||..+|+.+..+
T Consensus 439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS----PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp TCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC----CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence 2779999997 66666655432 2233345567888999999999999999999999888
Q ss_pred ecccC-CeEEEEEcCCCCEEEE
Q 010324 481 KVHEK-DVIGVTHHPHRNLLAT 501 (513)
Q Consensus 481 ~~h~~-~v~~~~~~p~~~~l~s 501 (513)
....+ .-.-+.|.++|+.+++
T Consensus 515 ~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 515 PTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp ECSSCCCSCCEEEEETTEEEEE
T ss_pred eCCCCcccCCEEEEeCCEEEEE
Confidence 75432 2234556677765443
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.28 E-value=6.9e-10 Score=97.93 Aligned_cols=215 Identities=10% Similarity=0.025 Sum_probs=150.2
Q ss_pred cccceeeeeccccCceeEEEECCCCCEEEEEec--CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCE
Q 010324 201 PTTLSHTIKFGTKSHAECARFSPDGQFLVSCSF--DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM 278 (513)
Q Consensus 201 ~~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~--dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 278 (513)
+.+...++..+.......++|+|+|...++.+. ++.|+ +.|..+++....+.... + .....+++. ++.
T Consensus 8 ~~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~-~iD~~tg~v~~~i~l~~------~-~fgeGi~~~--g~~ 77 (266)
T 2iwa_A 8 IVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVR-QVALQTGKVENIHKMDD------S-YFGEGLTLL--NEK 77 (266)
T ss_dssp EEEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEE-EEETTTCCEEEEEECCT------T-CCEEEEEEE--TTE
T ss_pred CceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEE-EEECCCCCEEEEEecCC------C-cceEEEEEe--CCE
Confidence 344556665444455688999998755444443 57896 99999999877654311 1 122345554 445
Q ss_pred EEEE-eCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccc-----cce
Q 010324 279 LASG-SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHS-----SYV 352 (513)
Q Consensus 279 l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v 352 (513)
|+.+ -.++.+.++|..+.+.+.++..+ ... ...+++||+.++++..++.|.++|..+.+.+..+.-.. ..+
T Consensus 78 lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 78 LYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp EEEEETTCSEEEEEETTTTEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 5554 45789999999999999888633 111 23355688888887788999999999988887776321 136
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCC-------CCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEE
Q 010324 353 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP-------PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM 425 (513)
Q Consensus 353 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~ 425 (513)
+.+.|. +|..++....++.|.+.|..+++.+..+.... .........+.+++.|++..+++++...+.++..
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 678888 67555555567899999999999988886431 0011124568999999987888888899999998
Q ss_pred EccC
Q 010324 426 TLQG 429 (513)
Q Consensus 426 d~~~ 429 (513)
++..
T Consensus 234 ~l~~ 237 (266)
T 2iwa_A 234 KLHL 237 (266)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8863
No 236
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.27 E-value=2.5e-08 Score=89.74 Aligned_cols=256 Identities=11% Similarity=0.058 Sum_probs=160.4
Q ss_pred CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeecc
Q 010324 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS-QDGKIKVWRIRSGQCLRRLE 303 (513)
Q Consensus 225 g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~ 303 (513)
|++|..+.. +.|+ .++++...... +... ..+......+.+++|++++..|+.+. .++.|..++...+.....+.
T Consensus 1 ~~~l~~~~~-~~I~-~~~~~g~~~~~-~~~~--~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~ 75 (267)
T 1npe_A 1 GTHLLFAQT-GKIE-RLPLERNTMKK-TEAK--AFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR 75 (267)
T ss_dssp CEEEEEEEE-EEEE-EEEESSSCBCG-GGCE--EEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC
T ss_pred CcEEEEEcC-CeEE-EEEecCccccc-ccce--eeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE
Confidence 345666554 4675 77776543211 1000 00111234578999999766666554 56799999987654333222
Q ss_pred cccccCeEEEEEccCCCEEEEe-eCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC---CCcEEEEeCC
Q 010324 304 RAHSEGVTSLVFSRDGSQILST-SFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS---DCTVKVWDLK 379 (513)
Q Consensus 304 ~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~ 379 (513)
........+++.|++..++.+ ...+.|.++++..................++++|++..|..+.. .+.|..+++.
T Consensus 76 -~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 76 -QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp -TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred -CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 223567899999976666655 45678999998643322222222245789999997666655554 3688888876
Q ss_pred CCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEE
Q 010324 380 STDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYC 459 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 459 (513)
... ...+.. ..-.....+++.+++..++++....+.|..++..+.....+... ......++.. +..++.
T Consensus 155 g~~-~~~~~~-----~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyv 223 (267)
T 1npe_A 155 GTN-RRILAQ-----DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYY 223 (267)
T ss_dssp SCC-CEEEEC-----TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEE
T ss_pred CCC-cEEEEE-----CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC---CCCceEEEEe--CCEEEE
Confidence 432 222211 11235788999998756777777889999999986654444332 2234566654 455555
Q ss_pred Ee-cCceEEEEECCCceeeEeeeccc-CCeEEEEEcCCCC
Q 010324 460 VG-EDRNLYCFSHQSGKLEHLMKVHE-KDVIGVTHHPHRN 497 (513)
Q Consensus 460 g~-~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~ 497 (513)
+. ..+.|..+|..+++.+..+.... .....+++.|++.
T Consensus 224 a~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 224 TDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 55 66899999999999888876443 2477888888764
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.27 E-value=4.8e-10 Score=108.95 Aligned_cols=216 Identities=13% Similarity=0.147 Sum_probs=156.7
Q ss_pred CCCEEEEEeC-CCcEEEEEcCCcceeeecccccccCeEEEEE-c-cCCCEEEEee------------------CCCcEEE
Q 010324 275 DSEMLASGSQ-DGKIKVWRIRSGQCLRRLERAHSEGVTSLVF-S-RDGSQILSTS------------------FDSTARI 333 (513)
Q Consensus 275 ~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg~i~i 333 (513)
||+++..+.. ++.|.+.|+.+.++...+.......+..+++ + |++.++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888888766 4579999999999887554344566889998 5 9999999885 2457999
Q ss_pred EecCCCceeeEecccccceeEEEEccCCCEEEEEeCCC--------------------------------------cEEE
Q 010324 334 HGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC--------------------------------------TVKV 375 (513)
Q Consensus 334 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------------------------------~i~i 375 (513)
+|..+.+...++.-.. ....++++|+|+++++++.+. .|.+
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999998888876433 457788999999999888553 3666
Q ss_pred EeCCC--Cce-eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe-------------EEEEeecCc
Q 010324 376 WDLKS--TDC-LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-------------VVKSFSSGK 439 (513)
Q Consensus 376 wd~~~--~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-------------~~~~~~~~~ 439 (513)
.|.++ ++. +..+.. .....++.++|++...++++..+..|.++|+... ......
T Consensus 259 ID~~~~~~~~~~~~Ipv-------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--- 328 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPI-------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--- 328 (595)
T ss_dssp EECSGGGCCSSEEEEEE-------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB---
T ss_pred EeCcccCCceeEEEEec-------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC---
Confidence 66665 333 333321 1256778999999667777778899999999843 222222
Q ss_pred cCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCC----------ceeeEeeecccCCe-----EEEEEcCCCCEEEEEE
Q 010324 440 REGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQS----------GKLEHLMKVHEKDV-----IGVTHHPHRNLLATYG 503 (513)
Q Consensus 440 ~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~----------~~~~~~~~~h~~~v-----~~~~~~p~~~~l~s~~ 503 (513)
.+.....++|+++| ++++.. -|+.|.+||+.+ .+.+..+..|-.+- .++..+|||++|+++.
T Consensus 329 -vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 329 -LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp -CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred -CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 24457899999999 555544 799999999987 45667776664432 1234578999998886
No 238
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=3.2e-10 Score=106.33 Aligned_cols=205 Identities=13% Similarity=0.139 Sum_probs=135.9
Q ss_pred cCeEEEEEccCCCEEEEee--CCCcEEEEecCCCceeeEec-------ccccceeEEEEccCCCEEEEEeC-----CCcE
Q 010324 308 EGVTSLVFSRDGSQILSTS--FDSTARIHGLKSGKLLKEFR-------GHSSYVNDAIFTNDGSRVVTASS-----DCTV 373 (513)
Q Consensus 308 ~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~-----dg~i 373 (513)
..+..++++|+|+.+++.. .++.+++|.+.+++. ..+. .+...+.+++++++++.+++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999888864 234245555445543 2221 23457899999999876655433 5789
Q ss_pred EEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc---CCCcEEEEEccCeEEEEeecCc----c------
Q 010324 374 KVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN---KTSSIYIMTLQGQVVKSFSSGK----R------ 440 (513)
Q Consensus 374 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~----~------ 440 (513)
.+||+.+++.+..+..+.........+..+++.+++...+++.. .++.|.+||........+...+ .
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999999877776654322233446788999886645555555 6789999999743333322110 0
Q ss_pred -----------------CCCcEEEEEECCCCCEEEEEecCc-eEEEEECCC---c-----eeeE--eeecccCCeEEEEE
Q 010324 441 -----------------EGGDFVAACVSPKGEWIYCVGEDR-NLYCFSHQS---G-----KLEH--LMKVHEKDVIGVTH 492 (513)
Q Consensus 441 -----------------~~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd~~~---~-----~~~~--~~~~h~~~v~~~~~ 492 (513)
....+..++++|+|+.|+++..++ .++.++... + +... ...++.+....+++
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 012357899999999999888665 666665321 1 1011 11234456678999
Q ss_pred cCCCCEEEEEECCCeEEeccC
Q 010324 493 HPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 493 ~p~~~~l~s~~~dg~i~iWdp 513 (513)
+++|+++++...++.|.+|||
T Consensus 256 d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 256 DKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp CTTCCEEEEEGGGTEEEEEET
T ss_pred CCCCCEEEEccCCCeEEEEEC
Confidence 999999999989999999986
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.21 E-value=4.6e-10 Score=104.71 Aligned_cols=258 Identities=16% Similarity=0.158 Sum_probs=165.7
Q ss_pred EEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcce
Q 010324 219 ARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC 298 (513)
Q Consensus 219 ~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 298 (513)
..+..+|. +.+++.++.+. .|| .+++....... +...+.++...++|. +..++.+ +..+|. +++.
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~-~~d-~~g~~~~~~~~--------~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~ 89 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLY-AIN-TDGSVKWFFKS--------GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE 89 (330)
T ss_dssp CEECTTSC-EECSSTTTTTE-EEC-TTSCEEESSCG--------GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG
T ss_pred ceEccCCe-EEEEcCCCEEE-EEC-CCCcEEEEEec--------CCCcccceEEecCCc-EEEecCc--EEEECC-CCcE
Confidence 44545554 56667777774 899 77776544331 344567777777775 4445444 888885 6666
Q ss_pred eeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeC
Q 010324 299 LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 378 (513)
Q Consensus 299 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 378 (513)
...+. ..........+. +..+.+++.++.|..+|.. ++...........+.++...+++. +..++.++.|..+|.
T Consensus 90 ~~~~~-~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~ 164 (330)
T 3hxj_A 90 KWRFD-TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINP 164 (330)
T ss_dssp GGGSC-C-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECT
T ss_pred EEEEE-CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECC
Confidence 55543 222222233333 5578888889999999987 877776665666677778877776 666778899999999
Q ss_pred CCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEE
Q 010324 379 KSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIY 458 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 458 (513)
. ++....+... ...+.++...+++ .+.+++ +.+..+|..+......... ...+.+++..++|. |+
T Consensus 165 ~-g~~~~~~~~~------~~~~~~~~~d~~g--~l~v~t--~~l~~~d~~g~~~~~~~~~---~~~~~~~~~~~~g~-l~ 229 (330)
T 3hxj_A 165 D-GTEKWRFKTN------DAITSAASIGKDG--TIYFGS--DKVYAINPDGTEKWNFYAG---YWTVTRPAISEDGT-IY 229 (330)
T ss_dssp T-SCEEEEEECS------SCCCSCCEECTTC--CEEEES--SSEEEECTTSCEEEEECCS---SCCCSCCEECTTSC-EE
T ss_pred C-CCEeEEEecC------CCceeeeEEcCCC--EEEEEe--CEEEEECCCCcEEEEEccC---CcceeceEECCCCe-EE
Confidence 8 7766665532 2234455554443 455555 8899999556665554432 23456777788775 56
Q ss_pred EEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 459 CVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 459 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
+++.++.++.+|. +++.+..+......+..+...+++ .|..++.+|.|..+||
T Consensus 230 v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 230 VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred EEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 6777888888874 566666665544445556665555 4556777878888775
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=1.3e-08 Score=104.03 Aligned_cols=285 Identities=11% Similarity=0.104 Sum_probs=175.3
Q ss_pred CCEEEEEecCCeEEEEEeccccccccccccccccccc-cCC-ccE-EEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeee
Q 010324 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFM-MHD-ETV-LCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRR 301 (513)
Q Consensus 225 g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~-~h~-~~v-~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 301 (513)
+..+++++.++.+ +-+|..+|+.+............ ... ..+ ..+++ .+..++.++.|+.|..+|..+|+.+.+
T Consensus 66 ~g~vyv~~~~~~v-~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRV-IAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEE-EEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeE-EEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 5677778888888 48999888887665432211100 000 000 11222 356788888999999999999998877
Q ss_pred cccccccCeEEEEEcc--CCCEEEEeeC------CCcEEEEecCCCceeeEecccc------------------------
Q 010324 302 LERAHSEGVTSLVFSR--DGSQILSTSF------DSTARIHGLKSGKLLKEFRGHS------------------------ 349 (513)
Q Consensus 302 ~~~~~~~~v~~~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~------------------------ 349 (513)
+..........+..+| .+..+++++. +|.|..+|.++|+.+.++....
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 7532110000000111 1345565543 5899999999999988775210
Q ss_pred -------cceeEEEEccCCCEEEEEeCCC-------------------cEEEEeCCCCceeEeecCCCCC-CC--CCcee
Q 010324 350 -------SYVNDAIFTNDGSRVVTASSDC-------------------TVKVWDLKSTDCLQTFKPPPPL-RG--GDASV 400 (513)
Q Consensus 350 -------~~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-~~--~~~~v 400 (513)
.....++++|+...++.++.++ .|..+|.++++....+...... .. ...+.
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~ 302 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI 302 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence 0112468888888888888776 3999999999998877643110 00 01111
Q ss_pred eEEEecCCCC--CeEEEEcCCCcEEEEEcc-CeEEEEeecCc---------cCCC------------------------c
Q 010324 401 NSVHLFPKNP--DHIVVCNKTSSIYIMTLQ-GQVVKSFSSGK---------REGG------------------------D 444 (513)
Q Consensus 401 ~~~~~~~~~~--~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~---------~~~~------------------------~ 444 (513)
....+..++. ..+++++.+|.++++|.. |+.+....... .... .
T Consensus 303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~ 382 (668)
T 1kv9_A 303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHN 382 (668)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSC
T ss_pred EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccC
Confidence 1111112331 368889999999999987 55553322111 0000 0
Q ss_pred EEEEEECCCCCEEEEEe------------------------------------cCceEEEEECCCceeeEeeecccCCeE
Q 010324 445 FVAACVSPKGEWIYCVG------------------------------------EDRNLYCFSHQSGKLEHLMKVHEKDVI 488 (513)
Q Consensus 445 ~~~~~~s~~~~~l~~g~------------------------------------~dg~i~iwd~~~~~~~~~~~~h~~~v~ 488 (513)
...++++|+...+++.. .+|.|+.||..+++.+.....+. ++.
T Consensus 383 w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~ 461 (668)
T 1kv9_A 383 WHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWN 461 (668)
T ss_dssp SSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCC
T ss_pred CCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCc
Confidence 11257777777666421 24889999999999988776443 333
Q ss_pred EEEEcCCCCEEEEEECCCeEEeccC
Q 010324 489 GVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 489 ~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
...+...+.+++.++.||.++.||+
T Consensus 462 ~~~~~t~gg~vf~g~~dg~l~a~d~ 486 (668)
T 1kv9_A 462 GGTLSTAGNLVFQGTAAGQMHAYSA 486 (668)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEET
T ss_pred CceeEeCCCEEEEECCcccchhhhh
Confidence 3445557888889999999999984
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.10 E-value=1.5e-06 Score=91.10 Aligned_cols=286 Identities=10% Similarity=0.140 Sum_probs=177.9
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 292 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd 292 (513)
...|.++...++|.+ ..|+.++-+. .|+..++............. -....|.++...++|. |..|+.++-|..||
T Consensus 309 ~~~i~~i~~D~~g~l-Wigt~~~Gl~-~~~~~~~~~~~~~~~~~~~~--l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~ 383 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGM-WLGTYFGGLN-YYHPIRNRFKNIRNIPYKNS--LSDNVVSCIVEDKDKN-LWIGTNDGGLNLYN 383 (795)
T ss_dssp SSCEEEEEECTTSCE-EEEESSSCEE-EECGGGGSSEEECCCTTSSS--CSCSSEEEEEECTTSC-EEEEESSSCEEEEC
T ss_pred CCcEEEEEEeCCcCE-EEEECCCCeE-EeCCCcccceEEcCCCCCCC--CCCCeeEEEEECCCCC-EEEEECCCCeEEEc
Confidence 356899999998874 4566656663 88876554321111000001 1346799999998876 66677787899999
Q ss_pred cCCcceeeeccc-------ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEec----ccccceeEEEEccCC
Q 010324 293 IRSGQCLRRLER-------AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR----GHSSYVNDAIFTNDG 361 (513)
Q Consensus 293 ~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~ 361 (513)
..++....-... .....|.+++..++|..|.+|+.++-|..||..+++...... .....|.++...++|
T Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 463 (795)
T 4a2l_A 384 PITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG 463 (795)
T ss_dssp TTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS
T ss_pred CCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC
Confidence 877654332210 123578999998888757778887889999988776433221 124568899988888
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeec----
Q 010324 362 SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSS---- 437 (513)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---- 437 (513)
...+ |+.+ .+.+||..+++.................|.++...+++ .+.+++. +-+..|+...... .+..
T Consensus 464 ~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g--~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~ 537 (795)
T 4a2l_A 464 NLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK--RLWIGGE-EGLSVFKQEGLDI-QKASILPV 537 (795)
T ss_dssp CEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC--CEEEEES-SCEEEEEEETTEE-EECCCSCS
T ss_pred CEEE-EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC--CEEEEeC-CceEEEeCCCCeE-EEecCCCC
Confidence 7554 4444 49999988765433221100001123567888777664 4444555 5688888875544 3321
Q ss_pred CccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeec---ccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV---HEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.......+.++..+++|.+.+ |+.. .+..||..+++....-.. ....|.++...++|.+.+++ ..| |..|+|
T Consensus 538 ~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~G-l~~~~~ 612 (795)
T 4a2l_A 538 SNVTKLFTNCIYEASNGIIWV-GTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-NRG-ISCFNP 612 (795)
T ss_dssp CGGGGSCEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-TTE-EEEEET
T ss_pred CCCCCCeeEEEEECCCCCEEE-EeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-CCc-eEEEcC
Confidence 112234688899999988555 4444 688899877754432111 13468889998888876655 444 555654
No 242
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.10 E-value=2.2e-08 Score=87.15 Aligned_cols=206 Identities=14% Similarity=0.143 Sum_probs=139.6
Q ss_pred ccceeeeeccccCceeEEEECCCCCEEEEEecCC--eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEE
Q 010324 202 TTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDG--FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 279 (513)
Q Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg--~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 279 (513)
.+..++++.....-...+.|+ ++.+..+.+.+| .|+ .+|+.+++....+... .........++++.|
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~-~vD~~Tgkv~~~~~l~---------~~~FgeGit~~g~~l 99 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIR-KVDIESGKTLQQIELG---------KRYFGEGISDWKDKI 99 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEE-EECTTTCCEEEEEECC---------TTCCEEEEEEETTEE
T ss_pred eEEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEE-EEECCCCcEEEEEecC---------CccceeEEEEeCCEE
Confidence 344555544444445789998 677667777766 897 9999999987766531 222222222334555
Q ss_pred EEEe-CCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccc--c---ccee
Q 010324 280 ASGS-QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH--S---SYVN 353 (513)
Q Consensus 280 ~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~ 353 (513)
.... .++.+.+||..+.+.+.++.... ....+++|+..|+.+..++.|.++|..+.+.+.++... . ..++
T Consensus 100 y~ltw~~~~v~v~D~~t~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred EEEEeeCCEEEEEECccCcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 5554 58899999999999999887432 11233357888888777888999999999988877642 1 2345
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCC------CCCCceeeEEEecCCCCCeEEEEcCCCcEE
Q 010324 354 DAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPL------RGGDASVNSVHLFPKNPDHIVVCNKTSSIY 423 (513)
Q Consensus 354 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 423 (513)
.+.|. +|...+..-.+..|.+.|.++++.+..+...... .......+.+++.|+...++++|-.=..++
T Consensus 176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ 250 (262)
T 3nol_A 176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVF 250 (262)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceE
Confidence 67776 6765555556889999999999998888754211 112346789999998866677665544443
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.09 E-value=1.5e-06 Score=91.26 Aligned_cols=283 Identities=7% Similarity=0.053 Sum_probs=181.6
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 292 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd 292 (513)
...|.++...++|.+.+ |+.+| +. +|+..++....... .......-....|.++...++|. |..|+.++-|..|+
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~G-l~-~~~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~ 336 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFND-LN-IYHEGTDSFASYSS-NPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYH 336 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESSC-EE-EEETTTTEEEEECC-CTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEEC
T ss_pred CCeEEEEEEcCCCCEEE-EeCCh-hh-eEcCCCCeEEEEec-CCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeC
Confidence 35699999999888555 44455 53 88877665432111 00000111346799999999886 66677777899998
Q ss_pred cCCcceeeeccc------ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecc--------cccceeEEEEc
Q 010324 293 IRSGQCLRRLER------AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG--------HSSYVNDAIFT 358 (513)
Q Consensus 293 ~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~v~~~~~~ 358 (513)
..++... .+.. -....|.++...++|. |..|+.++-|..||..++........ ....|.++...
T Consensus 337 ~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 337 PIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp GGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred CCcccce-EEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 7665432 2210 1245699999988876 55678787899999877654332211 23568899988
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecC
Q 010324 359 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSG 438 (513)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 438 (513)
++|+.|..|+.++.|..||..+++... +..... ......|.++...+++ .+.+++. +-+..|+........+...
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~-~l~~~~v~~i~~d~~g--~lwigt~-~Gl~~~~~~~~~~~~~~~~ 489 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNS-QLVNENVYAILPDGEG--NLWLGTL-SALVRFNPEQRSFTTIEKE 489 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTS-CCSCSCEEEEEECSSS--CEEEEES-SCEEEEETTTTEEEECCBC
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCC-CcCCCeeEEEEECCCC--CEEEEec-CceeEEeCCCCeEEEcccc
Confidence 888757778877779999998876433 222111 1224567888877654 4555555 5588899876555554432
Q ss_pred ----ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeee-------cccCCeEEEEEcCCCCEEEEEECCCe
Q 010324 439 ----KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK-------VHEKDVIGVTHHPHRNLLATYGEDCT 507 (513)
Q Consensus 439 ----~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~p~~~~l~s~~~dg~ 507 (513)
......+.++...++|...+.. . +.++.||..+++. . +. .+...|.++...++|.+.++.. .|
T Consensus 490 ~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G- 563 (795)
T 4a2l_A 490 KDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG- 563 (795)
T ss_dssp TTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-
T ss_pred ccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-
Confidence 1123568889999988865544 4 5688899877765 2 21 2345789999988888666543 44
Q ss_pred EEeccC
Q 010324 508 MKLWKP 513 (513)
Q Consensus 508 i~iWdp 513 (513)
+..|||
T Consensus 564 l~~~d~ 569 (795)
T 4a2l_A 564 FYCFNE 569 (795)
T ss_dssp EEEEET
T ss_pred ceeECC
Confidence 666654
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.08 E-value=2.7e-08 Score=92.29 Aligned_cols=233 Identities=9% Similarity=0.059 Sum_probs=151.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeeccc-------------------ccccCeEEEEEccCCCEEEEee
Q 010324 266 TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER-------------------AHSEGVTSLVFSRDGSQILSTS 326 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~l~~~~ 326 (513)
...+++|++++++++++..++.|..||..++... .+.. .....+..+++.+++..|+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 4567889999988888888999999997765432 2210 0123578899998334566665
Q ss_pred CCCcEEEEecCCCceeeEecc-----cccceeEEEEcc-CCCEEEEEeC-----------------CCcEEEEeCCCCce
Q 010324 327 FDSTARIHGLKSGKLLKEFRG-----HSSYVNDAIFTN-DGSRVVTASS-----------------DCTVKVWDLKSTDC 383 (513)
Q Consensus 327 ~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~iwd~~~~~~ 383 (513)
..+.|..+|..++.. ..+.. .......+++.+ +|+..++-.. ++.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 556688888765532 22211 123478899999 9987666432 36788999876654
Q ss_pred eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe---EEEEeecCccCCCcEEEEEECCCCCEEEEE
Q 010324 384 LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ---VVKSFSSGKREGGDFVAACVSPKGEWIYCV 460 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 460 (513)
..... .....+.++++|++..++++-...+.|..+++.+. ....+... .+ ...++++++|++.++.
T Consensus 178 ~~~~~-------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 178 TLLLK-------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp EEEEE-------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEEE
T ss_pred EEecc-------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEEe
Confidence 32211 11235678999987445555577789999998742 22222221 12 6789999999866665
Q ss_pred ec----------CceEEEEECCCceeeEeeeccc----CCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 461 GE----------DRNLYCFSHQSGKLEHLMKVHE----KDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 461 ~~----------dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.. .+.|..+|. .++.+..+.... ..++++++ .++.++++...++.|.++++
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred cCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 54 477889987 477776665442 34677776 46666666667788888764
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.08 E-value=1e-08 Score=99.74 Aligned_cols=234 Identities=12% Similarity=0.080 Sum_probs=161.6
Q ss_pred CCCCEEEEEecC-CeEEEEEeccccccccccccccccccccCCccEEEEEE-c-CCCCEEEEEe----------------
Q 010324 223 PDGQFLVSCSFD-GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF-S-RDSEMLASGS---------------- 283 (513)
Q Consensus 223 ~~g~~la~g~~d-g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~-~~~~~l~s~~---------------- 283 (513)
+||+++.+...+ +.|. +-|+.+.+....+... ....+..+++ + |++.++++++
T Consensus 99 ~DG~~lfVnd~~~~rVa-vIdl~t~~~~~ii~ip-------~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVA-RVRCDVMKCDAILEIP-------NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEEEETTTTEEE-EEETTTTEEEEEEECS-------SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cCCCEEEEEcCCCCEEE-EEECCCceEeeEEeCC-------CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 488888887664 4675 8899988766533221 2345788888 5 8999998885
Q ss_pred --CCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCC--------------------------------
Q 010324 284 --QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS-------------------------------- 329 (513)
Q Consensus 284 --~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------------------------------- 329 (513)
.++.+.+.|..+.+...++.-+. ....++++|+|+++++.+.+.
T Consensus 171 ~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred cccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 24589999999998888876322 456788999999999888653
Q ss_pred ------cEEEEecCC--Cce-eeEecccccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCc------------eeEee
Q 010324 330 ------TARIHGLKS--GKL-LKEFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWDLKSTD------------CLQTF 387 (513)
Q Consensus 330 ------~i~i~d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~~ 387 (513)
.|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ .....
T Consensus 249 k~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v 327 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP 327 (595)
T ss_dssp CSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred CeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc
Confidence 467777776 444 444443 23467899999999887766 57889999998653 12222
Q ss_pred cCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-----------eEEEEeecCccCCCcE--EEEEECCCC
Q 010324 388 KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-----------QVVKSFSSGKREGGDF--VAACVSPKG 454 (513)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-----------~~~~~~~~~~~~~~~~--~~~~~s~~~ 454 (513)
. .......++|+|++ ...++..-++.|..||+.. ..+..+..+...+... .....+|||
T Consensus 328 ~-------vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG 399 (595)
T 1fwx_A 328 E-------LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN 399 (595)
T ss_dssp B-------CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS
T ss_pred C-------CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC
Confidence 2 23467889999998 7788888999999999874 2344444322100000 112458999
Q ss_pred CEEEEEec---Cce----------EEEEECCCce
Q 010324 455 EWIYCVGE---DRN----------LYCFSHQSGK 475 (513)
Q Consensus 455 ~~l~~g~~---dg~----------i~iwd~~~~~ 475 (513)
++|++... |.. -.++|+..++
T Consensus 400 k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 400 DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 99999873 332 2789996555
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.08 E-value=8.1e-08 Score=84.73 Aligned_cols=202 Identities=9% Similarity=0.065 Sum_probs=138.8
Q ss_pred cEEEEEEcCCCCEEEEEeC--CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEee-CCCcEEEEecCCCcee
Q 010324 266 TVLCIEFSRDSEMLASGSQ--DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKSGKLL 342 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~ 342 (513)
....++|+|++...++.+. ++.|.++|+.+++.+..+..+.......+++. ++.|+.+. .++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 4689999998755554443 57999999999999888753332333455554 55555544 5789999999999999
Q ss_pred eEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcE
Q 010324 343 KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 422 (513)
Q Consensus 343 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 422 (513)
.++..... ....+++||+.++++..++.|.++|..+.+....+...... ..-..++.+.+. ++ ..++....++.|
T Consensus 100 ~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~-~p~~~~nele~~-dg-~lyvn~~~~~~V 174 (266)
T 2iwa_A 100 KNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG-HRVIRLNELEYI-NG-EVWANIWQTDCI 174 (266)
T ss_dssp EEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT-EECCCEEEEEEE-TT-EEEEEETTSSEE
T ss_pred EEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC-cccccceeEEEE-CC-EEEEecCCCCeE
Confidence 88864311 23446678888888878899999999999888877643210 001135667776 33 555555578899
Q ss_pred EEEEcc-CeEEEEeecCc----------cCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCc
Q 010324 423 YIMTLQ-GQVVKSFSSGK----------REGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSG 474 (513)
Q Consensus 423 ~i~d~~-~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~ 474 (513)
.+.|.. ++....+.... ........++++|+++.+++++ ..+.++..++...
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999997 55666665421 1123568999999987665554 7889999887654
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.04 E-value=3.2e-07 Score=82.49 Aligned_cols=226 Identities=12% Similarity=0.054 Sum_probs=140.1
Q ss_pred CEEEEEeCCCcEEEEEcCCccee----eecccccccCeEEEEEccCCCEEEEee-CCCcEEEEecCCCceeeEecccccc
Q 010324 277 EMLASGSQDGKIKVWRIRSGQCL----RRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKSGKLLKEFRGHSSY 351 (513)
Q Consensus 277 ~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~ 351 (513)
.+|+.+.. +.|+.+++...... ..........+..++|++++..|+.+. .++.|..++...+............
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 45555553 47888887654321 111111234578999999776666554 5679999998765443333333346
Q ss_pred eeEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC--CCcEEEEEcc
Q 010324 352 VNDAIFTNDGSRVVTA-SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK--TSSIYIMTLQ 428 (513)
Q Consensus 352 v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--~~~i~i~d~~ 428 (513)
...+++++++..+..+ ...+.|.++++..... ..+.. ........+++.|+++.++++... .+.|..++++
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~-----~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFD-----TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC-----SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEE-----CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 7899999976555544 4567899999875332 22211 112356889999976455555443 4789899988
Q ss_pred CeEEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCe
Q 010324 429 GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCT 507 (513)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~ 507 (513)
+.....+... .......+++++++..|+.+. ..+.|.++|.........+.. ......++.. .+.++++...++.
T Consensus 155 g~~~~~~~~~--~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~ 230 (267)
T 1npe_A 155 GTNRRILAQD--NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNS 230 (267)
T ss_dssp SCCCEEEECT--TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTE
T ss_pred CCCcEEEEEC--CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCe
Confidence 6554443321 124578899999887776665 568999999976554444332 2344567664 3444444445678
Q ss_pred EEeccC
Q 010324 508 MKLWKP 513 (513)
Q Consensus 508 i~iWdp 513 (513)
|.++|+
T Consensus 231 v~~~d~ 236 (267)
T 1npe_A 231 VIAMDL 236 (267)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 887764
No 248
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.04 E-value=1.2e-07 Score=94.88 Aligned_cols=282 Identities=13% Similarity=0.090 Sum_probs=168.6
Q ss_pred CCEEEEEec-CCeEEEEEec-ccccccccccccccccccc--CCcc-EEEEEEcCCCCEEEEEeCCCcEEEEEcCCccee
Q 010324 225 GQFLVSCSF-DGFIEVVWDY-LSGKLKKDLQYQADETFMM--HDET-VLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCL 299 (513)
Q Consensus 225 g~~la~g~~-dg~i~~iwd~-~~~~~~~~~~~~~~~~~~~--h~~~-v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 299 (513)
+..+++++. ++.+ +-+|. .+|+.+............. .... -..++. .+..++.++.|+.+..+|..+|+.+
T Consensus 62 ~g~vyv~~~~~~~v-~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNT-YALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEEECSTTTCE-EEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCEE-EEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 455666666 7778 48888 7888776554322110000 0000 011222 3567888888999999999999988
Q ss_pred eecccccc---cCeEE-EEEccCCCEEEEeeC------CCcEEEEecCCCceeeEecccccc------------------
Q 010324 300 RRLERAHS---EGVTS-LVFSRDGSQILSTSF------DSTARIHGLKSGKLLKEFRGHSSY------------------ 351 (513)
Q Consensus 300 ~~~~~~~~---~~v~~-~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~------------------ 351 (513)
.+...... ..+.+ .... + ..+++++. ++.|..+|.++|+.+.++......
T Consensus 139 W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 76642210 01111 1111 3 45666654 799999999999988776532111
Q ss_pred --------------------eeEEEEccCCCEEEEEeCC----------------CcEEEEeCCCCceeEeecCCCCC--
Q 010324 352 --------------------VNDAIFTNDGSRVVTASSD----------------CTVKVWDLKSTDCLQTFKPPPPL-- 393 (513)
Q Consensus 352 --------------------v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~-- 393 (513)
...+++.++...++.++.+ +.|..+|.++++.+..+......
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 0235677766677666542 35999999999988877643210
Q ss_pred --CCCCceeeEEEecCCCC--CeEEEEcCCCcEEEEEcc-CeEEEEeecCcc----------CCCcE-------------
Q 010324 394 --RGGDASVNSVHLFPKNP--DHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKR----------EGGDF------------- 445 (513)
Q Consensus 394 --~~~~~~v~~~~~~~~~~--~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~----------~~~~~------------- 445 (513)
.....++. +....++. ..++.++.+|.++++|.. ++.+........ ...++
T Consensus 297 d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~ 375 (571)
T 2ad6_A 297 DFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKG 375 (571)
T ss_dssp CCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCE
T ss_pred ccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCc
Confidence 01111211 11112332 356778889999999986 666555443220 00111
Q ss_pred -------------EEEEECCCCCEEEEEe-------------------------------------cCceEEEEECCCce
Q 010324 446 -------------VAACVSPKGEWIYCVG-------------------------------------EDRNLYCFSHQSGK 475 (513)
Q Consensus 446 -------------~~~~~s~~~~~l~~g~-------------------------------------~dg~i~iwd~~~~~ 475 (513)
..++++|++..+++.+ .+|.|+.||..+++
T Consensus 376 ~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~ 455 (571)
T 2ad6_A 376 TNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK 455 (571)
T ss_dssp EEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC
T ss_pred eEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC
Confidence 2357788877777654 35789999999999
Q ss_pred eeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 476 LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 476 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+..+... ..+.+......+..++.++.||.|+.||+
T Consensus 456 ~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 456 AKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp EEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred EEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 88877543 22333223335667777899999999884
No 249
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.03 E-value=4.1e-08 Score=100.48 Aligned_cols=281 Identities=11% Similarity=0.096 Sum_probs=157.2
Q ss_pred EEEECC-CCCEEEEEecCC-----------eEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC-
Q 010324 218 CARFSP-DGQFLVSCSFDG-----------FIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ- 284 (513)
Q Consensus 218 ~~~~s~-~g~~la~g~~dg-----------~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~- 284 (513)
++++.| +|+.++.|+.+. .+. +||..+++........ ..+.....++++.++++.++.|+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~-~yd~~t~~w~~~~~~~-----~~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTS-SWDPSTGIVSDRTVTV-----TKHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEE-EECTTTCCBCCCEEEE-----CSCCCSSCEEEECTTSCEEEECSSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEE-EEeCCCCcEEeCcccC-----CCCCCccccccCCCCCCEEEeCCCC
Confidence 566777 889999887543 464 8998877643221110 112233345678889999999984
Q ss_pred CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEee-CC-----CcEEEEecCCCceeeEe----cccccceeE
Q 010324 285 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS-FD-----STARIHGLKSGKLLKEF----RGHSSYVND 354 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~----~~~~~~v~~ 354 (513)
++.+.+||..+++-...-.......-.+++..++++.++.|+ .+ ..+.+||..+++....- ......-..
T Consensus 264 ~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~ 343 (656)
T 1k3i_A 264 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ 343 (656)
T ss_dssp TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT
T ss_pred CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc
Confidence 458999998876533221111122224556667999999998 44 56899999876543220 000000000
Q ss_pred EEEccCCCEEEEEeCCC---------cEEEEeCCCCceeEeecCCCCC---CCCCceeeEEEecCCCCCeEEEEcCCC--
Q 010324 355 AIFTNDGSRVVTASSDC---------TVKVWDLKSTDCLQTFKPPPPL---RGGDASVNSVHLFPKNPDHIVVCNKTS-- 420 (513)
Q Consensus 355 ~~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~~~-- 420 (513)
..+..++..++.++.+| .+..||..+............. ......-.++.+...+..+++.|+.++
T Consensus 344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 11224455555555443 4678888776533222111000 000111233333344446777776432
Q ss_pred ---------cEEEEEccCeEEEEee-cCccCCCcEEEEEECCCCCEEEEEecC-----------ceEEEEECCCceeeEe
Q 010324 421 ---------SIYIMTLQGQVVKSFS-SGKREGGDFVAACVSPKGEWIYCVGED-----------RNLYCFSHQSGKLEHL 479 (513)
Q Consensus 421 ---------~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~d-----------g~i~iwd~~~~~~~~~ 479 (513)
.+.+||.......... ..........+++..|+|+.++.|+.+ ..+.+||..+.+-...
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~ 503 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 503 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence 5777887755444443 111111222355677899999999854 4689999987653321
Q ss_pred --eecccCCeEEEEEcCCCCEEEEEEC
Q 010324 480 --MKVHEKDVIGVTHHPHRNLLATYGE 504 (513)
Q Consensus 480 --~~~h~~~v~~~~~~p~~~~l~s~~~ 504 (513)
+........+..+.|++++++.||.
T Consensus 504 ~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 504 NPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCccccccHhhcCCCcEEEecCCC
Confidence 2222222334556789999999984
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.02 E-value=9e-08 Score=95.58 Aligned_cols=284 Identities=10% Similarity=0.058 Sum_probs=168.2
Q ss_pred CCEEEEEec-CCeEEEEEec-ccccccccccccccccccc---CCccEEEEEEcCCCCE----EEEEeCCCcEEEEEcCC
Q 010324 225 GQFLVSCSF-DGFIEVVWDY-LSGKLKKDLQYQADETFMM---HDETVLCIEFSRDSEM----LASGSQDGKIKVWRIRS 295 (513)
Q Consensus 225 g~~la~g~~-dg~i~~iwd~-~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~----l~s~~~dg~i~vwd~~~ 295 (513)
+..+++++. ++.+ +-+|. .+|+.+............. .......++++|.+.. ++.++.|+.+..+|..+
T Consensus 62 ~g~vyv~~~~~~~v-~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNT-FALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCE-EEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEE-EEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 456666666 7777 47888 7887776554322110000 0001123455444444 88888999999999999
Q ss_pred cceeeecccccc---cCeEE-EEEccCCCEEEEee------CCCcEEEEecCCCceeeEecccccce-------------
Q 010324 296 GQCLRRLERAHS---EGVTS-LVFSRDGSQILSTS------FDSTARIHGLKSGKLLKEFRGHSSYV------------- 352 (513)
Q Consensus 296 ~~~~~~~~~~~~---~~v~~-~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~v------------- 352 (513)
|+.+.+...... ..+.+ .... ++ .+++++ .+|.|+.+|.++|+.+.++.......
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 998876542210 01111 1111 34 566655 38999999999999987765322110
Q ss_pred -------------------------eEEEEccCCCEEEEEeCC----------------CcEEEEeCCCCceeEeecCCC
Q 010324 353 -------------------------NDAIFTNDGSRVVTASSD----------------CTVKVWDLKSTDCLQTFKPPP 391 (513)
Q Consensus 353 -------------------------~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~ 391 (513)
..+++.++...++.++.+ +.|..+|.++++....+....
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 134666777777777765 379999999999888776432
Q ss_pred CCC----CCCceeeEEEec-CCCC--CeEEEEcCCCcEEEEEcc-CeEEEEeecCc----------cCCCc---------
Q 010324 392 PLR----GGDASVNSVHLF-PKNP--DHIVVCNKTSSIYIMTLQ-GQVVKSFSSGK----------REGGD--------- 444 (513)
Q Consensus 392 ~~~----~~~~~v~~~~~~-~~~~--~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~----------~~~~~--------- 444 (513)
.-. ....++. +... .++. ..++.++.+|.++++|.. ++.+....... ....+
T Consensus 299 ~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~ 377 (599)
T 1w6s_A 299 HDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTR 377 (599)
T ss_dssp TCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCC
T ss_pred CccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCC
Confidence 100 0111111 1111 2332 357778899999999987 66655543221 00000
Q ss_pred -----------------EEEEEECCCCCEEEEEe---------------------------------------cCceEEE
Q 010324 445 -----------------FVAACVSPKGEWIYCVG---------------------------------------EDRNLYC 468 (513)
Q Consensus 445 -----------------~~~~~~s~~~~~l~~g~---------------------------------------~dg~i~i 468 (513)
...++++|+...+++.. ..|.|..
T Consensus 378 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A 457 (599)
T 1w6s_A 378 MDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKA 457 (599)
T ss_dssp TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEE
T ss_pred CCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEE
Confidence 12356667666655431 3478999
Q ss_pred EECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 469 FSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 469 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
||+.+++.+...... .++..-.....+.+++.++.||.++.||+
T Consensus 458 ~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~ 501 (599)
T 1w6s_A 458 YNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDS 501 (599)
T ss_dssp ECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred EECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEEC
Confidence 999999988776532 22221112235677777899999998874
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.02 E-value=5.2e-08 Score=99.51 Aligned_cols=268 Identities=12% Similarity=0.118 Sum_probs=164.1
Q ss_pred CCCEEEEEecCCeEEEEEecccccccccccccccc-ccccCCccEEEEEEcCCCCEEEEEeC------CCcEEEEEcCCc
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADE-TFMMHDETVLCIEFSRDSEMLASGSQ------DGKIKVWRIRSG 296 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~~~------dg~i~vwd~~~~ 296 (513)
.+..+++++.|+.+ +.+|..+|+........... .......++. . ++ .+++++. +|.|..+|..+|
T Consensus 116 ~~~~v~v~~~dg~l-~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v----~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG 188 (668)
T 1kv9_A 116 WGDKVYVGTLDGRL-IALDAKTGKAIWSQQTTDPAKPYSITGAPRV----V-KG-KVIIGNGGAEYGVRGFVSAYDADTG 188 (668)
T ss_dssp EBTEEEEECTTSEE-EEEETTTCCEEEEEECSCTTSSCBCCSCCEE----E-TT-EEEECCBCTTTCCBCEEEEEETTTC
T ss_pred ECCEEEEEcCCCEE-EEEECCCCCEeeeeccCCCCCcceecCCCEE----E-CC-EEEEeCCCCCcCCCCEEEEEECCCC
Confidence 35678888999999 49999999987665432100 0000111211 1 33 4555543 589999999999
Q ss_pred ceeeeccccc------------------------------ccCeEEEEEccCCCEEEEeeCCC-----------------
Q 010324 297 QCLRRLERAH------------------------------SEGVTSLVFSRDGSQILSTSFDS----------------- 329 (513)
Q Consensus 297 ~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~l~~~~~dg----------------- 329 (513)
+.+.++.... ......+++.|+...++.++.++
T Consensus 189 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 189 KLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred cEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 9887764210 01112468888888888887766
Q ss_pred --cEEEEecCCCceeeEeccc--c-------cceeEEEEccCCC---EEEEEeCCCcEEEEeCCCCceeEeecCCCCC--
Q 010324 330 --TARIHGLKSGKLLKEFRGH--S-------SYVNDAIFTNDGS---RVVTASSDCTVKVWDLKSTDCLQTFKPPPPL-- 393 (513)
Q Consensus 330 --~i~i~d~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-- 393 (513)
.|..+|.++|+.+..++.. . .++....+..+|+ .++.++.+|.++++|..+|+.+.........
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 348 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence 3999999999998877642 1 2222223334665 6888999999999999999987543322100
Q ss_pred ------------------CC----------CCceeeEEEecCCCCCeEEEE-----------------------------
Q 010324 394 ------------------RG----------GDASVNSVHLFPKNPDHIVVC----------------------------- 416 (513)
Q Consensus 394 ------------------~~----------~~~~v~~~~~~~~~~~~l~~~----------------------------- 416 (513)
.+ ....-..++++|.. ..+++.
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~-g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 427 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT-GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFAD 427 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGG
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC-CEEEEeccccceEeeeeccccccccccccCccccc
Confidence 00 00001124555554 233221
Q ss_pred -------cCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCe-
Q 010324 417 -------NKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDV- 487 (513)
Q Consensus 417 -------~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v- 487 (513)
..+|.|..||.. ++.......... .....+...+.++++|+.||.++.||..+|+.+..+....+..
T Consensus 428 ~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~----~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~ 503 (668)
T 1kv9_A 428 ATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH----WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVA 503 (668)
T ss_dssp CCCCCGGGCEEEEEEEETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred cCCCCCCCccceEEEEeCCCCcEEEEccCCCC----CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCccc
Confidence 123789999987 666655544322 2222334467899999999999999999999998887553211
Q ss_pred EEEEEcCCCC-EEEEEE
Q 010324 488 IGVTHHPHRN-LLATYG 503 (513)
Q Consensus 488 ~~~~~~p~~~-~l~s~~ 503 (513)
.-+.+..+|+ +++.++
T Consensus 504 ~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 504 APMTFELAGRQYVAIMA 520 (668)
T ss_dssp CCEEEEETTEEEEEEEE
T ss_pred CceEEEECCEEEEEEEe
Confidence 2233444665 444443
No 252
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.01 E-value=1.8e-07 Score=81.99 Aligned_cols=212 Identities=15% Similarity=0.207 Sum_probs=143.8
Q ss_pred ccccCCccEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecC
Q 010324 259 TFMMHDETVLCIEFSRDSEMLA-SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 337 (513)
Q Consensus 259 ~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 337 (513)
.+.+-...+..++|+|++..|+ +...++.|...|.. ++.++++..........+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3444556799999999766555 46778899999987 888877753344678889999888776666567889999876
Q ss_pred CCce---eeEec------ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCC---CceeEeecCCC-CCCCCCceeeEEE
Q 010324 338 SGKL---LKEFR------GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS---TDCLQTFKPPP-PLRGGDASVNSVH 404 (513)
Q Consensus 338 ~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~-~~~~~~~~v~~~~ 404 (513)
.... +.... ..+.....++|+|.++.|+++.......+|.+.. .........+. .....-..+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5442 22221 1234568999999998888877765555665541 11111111000 0001123568999
Q ss_pred ecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccC------CCcEEEEEECCCCCEEEEEecCceEEEEECC
Q 010324 405 LFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE------GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 405 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 472 (513)
+.|..+.+++.+..+..+..+|..++.+..+.-.... -...-.+++.++|+ |+..++-+.++.|...
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 9999888899999999999999998866655544211 23567999999997 6666888888888654
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.00 E-value=2.1e-07 Score=80.36 Aligned_cols=206 Identities=10% Similarity=0.055 Sum_probs=137.4
Q ss_pred ccceeeeeccccCceeEEEECCCCCEEEEEecC--CeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEE
Q 010324 202 TTLSHTIKFGTKSHAECARFSPDGQFLVSCSFD--GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 279 (513)
Q Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~d--g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 279 (513)
.+...++++....-...+.|++ +.+..+.+.+ ..|+ .+|+.+++......... + .---.++.. ++.|
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~-~vD~~tgkv~~~~~l~~------~-~fgeGi~~~--~~~l 77 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVR-KVDLETGRILQRAEVPP------P-YFGAGIVAW--RDRL 77 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEE-EEETTTCCEEEEEECCT------T-CCEEEEEEE--TTEE
T ss_pred eEEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEE-EEECCCCCEEEEEeCCC------C-cceeEEEEe--CCEE
Confidence 3444555444445567899987 5555665654 4897 99999999877664321 1 111223333 4444
Q ss_pred EE-EeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccc-----ccee
Q 010324 280 AS-GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHS-----SYVN 353 (513)
Q Consensus 280 ~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~ 353 (513)
.. ...++.+.+||..+.+.+.++.... .-..++ +++..|+.+..++.|.++|..+.+.+.++.-.. ..++
T Consensus 78 y~ltw~~~~v~v~D~~tl~~~~ti~~~~--~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 78 IQLTWRNHEGFVYDLATLTPRARFRYPG--EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEECSS--CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEeeCCEEEEEECCcCcEEEEEeCCC--CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence 44 4568899999999999999987432 223444 567777777778999999999998888776422 2455
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCC-------CCCCceeeEEEecCCCCCeEEEEcCCCcEE
Q 010324 354 DAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPL-------RGGDASVNSVHLFPKNPDHIVVCNKTSSIY 423 (513)
Q Consensus 354 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 423 (513)
.+.|. +|..++..-.+..|.+.|.++++.+..+...... .......+.+++.|.+..++++|-.=..++
T Consensus 154 eLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~ 229 (243)
T 3mbr_X 154 ELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLY 229 (243)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred eeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEE
Confidence 66766 5665555546789999999999998887644211 112346789999998867777765544444
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.00 E-value=1.5e-07 Score=81.85 Aligned_cols=204 Identities=11% Similarity=0.074 Sum_probs=140.1
Q ss_pred cceeeeeccccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEE-
Q 010324 203 TLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS- 281 (513)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s- 281 (513)
+...++......-...+.|+ ++.+..+.+.+|.|+ ++|+.+++....+ ... ..---.+++. ++.|..
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~-~iD~~Tgkv~~~~-l~~-------~~FgeGit~~--g~~Ly~l 111 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLR-QLSLESAQPVWME-RLG-------NIFAEGLASD--GERLYQL 111 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEE-ECCSSCSSCSEEE-ECT-------TCCEEEEEEC--SSCEEEE
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEE-EEECCCCcEEeEE-CCC-------CcceeEEEEe--CCEEEEE
Confidence 34455544444555788887 466777788889997 9999999987765 321 1111234444 334444
Q ss_pred EeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccc-----cceeEEE
Q 010324 282 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHS-----SYVNDAI 356 (513)
Q Consensus 282 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~ 356 (513)
...++.+.+||..+.+.+.++... ..-..++ +|+..|+.+..++.|.++|..+.+.+.++.... ..++.+.
T Consensus 112 tw~~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 112 TWTEGLLFTWSGMPPQRERTTRYS--GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp ESSSCEEEEEETTTTEEEEEEECS--SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EccCCEEEEEECCcCcEEEEEeCC--CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 446889999999999999988743 2223444 578888888789999999999999888776421 2356677
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCC-------CCCCCceeeEEEecCCCCCeEEEEcCCCcEE
Q 010324 357 FTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPP-------LRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 423 (513)
Q Consensus 357 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 423 (513)
|. +|...+..-.+..|.+.|.++++.+..+..... ........+.+++.|.+..++++|-.=..++
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ 260 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLF 260 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceE
Confidence 77 676555554688999999999999888765310 1123346789999999877787775544443
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.98 E-value=2.9e-07 Score=84.62 Aligned_cols=231 Identities=8% Similarity=-0.007 Sum_probs=140.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCC--cEEEEecCCCcee
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS--TARIHGLKSGKLL 342 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~ 342 (513)
.....++|+++++++++-..++.|..||... .....+. ....+..+++.++|+.+++..... .|..+|..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4577899999998666666788999999764 3333332 335688999999998665554332 4777787777654
Q ss_pred eEecc-cccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCce-eEeecC---CCCCCCCCceeeEEEecCCCCCeEEEEc
Q 010324 343 KEFRG-HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDC-LQTFKP---PPPLRGGDASVNSVHLFPKNPDHIVVCN 417 (513)
Q Consensus 343 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 417 (513)
..... .......++..+++..+++-..++.|.++|..++.. +..... .......-...+.+ ++++..++++-.
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 32221 122334555555554455444688999999876421 111000 00000111234445 666645666677
Q ss_pred CCCcEEEEEccC--eE--EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeE--eeecccCCeEEEE
Q 010324 418 KTSSIYIMTLQG--QV--VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEH--LMKVHEKDVIGVT 491 (513)
Q Consensus 418 ~~~~i~i~d~~~--~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~ 491 (513)
..+.|..+++.+ .. ...+... .....++++++|++.++....+.|.++|.. ++... .+......+++++
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a 261 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA 261 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred CCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence 788999999873 11 1111111 224568899999877776678899999975 65532 3333335689999
Q ss_pred Ec---CCCCEEEEEECC
Q 010324 492 HH---PHRNLLATYGED 505 (513)
Q Consensus 492 ~~---p~~~~l~s~~~d 505 (513)
|. |++..|+.++..
T Consensus 262 ~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 262 FGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECCSTTTTTEEEEEECT
T ss_pred EecccCCCCEEEEECCC
Confidence 98 887766655543
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.95 E-value=4.4e-07 Score=84.04 Aligned_cols=246 Identities=9% Similarity=0.001 Sum_probs=149.2
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccc------------cccccCCccEEEEEEcC-CCCEEE
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD------------ETFMMHDETVLCIEFSR-DSEMLA 280 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~------------~~~~~h~~~v~~l~~~~-~~~~l~ 280 (513)
....+++|+++|+++.++..++.|. .|+..++.... +..... .........+.++++.+ +++ |+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~-~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVI-KYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LY 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEE-EECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEE-EECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EE
Confidence 3467789999999888888899994 89877654321 110000 00001123578999998 554 55
Q ss_pred EEeCCCcEEEEEcCCcceeeeccc----ccccCeEEEEEcc-CCCEEEEeeC-----------------CCcEEEEecCC
Q 010324 281 SGSQDGKIKVWRIRSGQCLRRLER----AHSEGVTSLVFSR-DGSQILSTSF-----------------DSTARIHGLKS 338 (513)
Q Consensus 281 s~~~dg~i~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~ 338 (513)
.+...+.|..+|..++.. ..+.. ........+++.+ +|+..++... ++.|..+|..+
T Consensus 96 v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 565555688888776542 22210 1123578899999 8976665432 36788999876
Q ss_pred CceeeEecccccceeEEEEccCCCEEEEE-eCCCcEEEEeCCCCc--eeEeecCCCCCCCCCceeeEEEecCCCCCeEEE
Q 010324 339 GKLLKEFRGHSSYVNDAIFTNDGSRVVTA-SSDCTVKVWDLKSTD--CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV 415 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 415 (513)
++...... .......++++|+|+.|..+ +..+.|..|++.... ....+.. ..+ ...+++.+++ .++++
T Consensus 175 ~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~------~~g-P~gi~~d~~G-~l~va 245 (322)
T 2fp8_A 175 KETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK------IPN-PGNIKRNADG-HFWVS 245 (322)
T ss_dssp TEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE------CSS-EEEEEECTTS-CEEEE
T ss_pred CEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe------CCC-CCCeEECCCC-CEEEE
Confidence 65432222 22346789999999866655 556889999987531 1111111 112 6778888877 55555
Q ss_pred EcC----------CCcEEEEEccCeEEEEeecCccC-CCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 416 CNK----------TSSIYIMTLQGQVVKSFSSGKRE-GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 416 ~~~----------~~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
... .+.|..+|..++.+..+...... ...+..+++ .++++.++...++.|..+++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 544 46788888888777766543211 123445555 3455444444677888888753
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.94 E-value=2.7e-07 Score=80.34 Aligned_cols=194 Identities=12% Similarity=0.172 Sum_probs=128.6
Q ss_pred eeeecccccccCeEEEEEccCCCEEEEeeCCC--cEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEe-CCCcEE
Q 010324 298 CLRRLERAHSEGVTSLVFSRDGSQILSTSFDS--TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVK 374 (513)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~ 374 (513)
.+.++..........+.|+ ++..+.+++.+| .|+.+|+.+++.+.++.... ........+++..+.... .++.+.
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEE
Confidence 4555543333445889998 666666666666 89999999999988876433 333333333455555554 588999
Q ss_pred EEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCc--cCCCcEEEEEEC
Q 010324 375 VWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGK--REGGDFVAACVS 451 (513)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~--~~~~~~~~~~~s 451 (513)
+||..+.+.+.++.... . -..++ +++ ..++.+..++.|.++|.. .+....+.... ..-..+..+.+.
T Consensus 111 v~D~~t~~~~~ti~~~~-----e--G~glt--~dg-~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDG-----E--GWGLT--HND-QYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp EEETTTCCEEEEEECSS-----C--CCCEE--ECS-SCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred EEECccCcEEEEEECCC-----C--ceEEe--cCC-CEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 99999999999887532 1 12233 345 556666668899999988 45555554432 111234456665
Q ss_pred CCCCEEEEEecCceEEEEECCCceeeEeeecc------------cCCeEEEEEcCCCCEEEEEEC
Q 010324 452 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH------------EKDVIGVTHHPHRNLLATYGE 504 (513)
Q Consensus 452 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h------------~~~v~~~~~~p~~~~l~s~~~ 504 (513)
+|+..+..-.++.|.+.|..+++.+..+... ....+.++|+|+++.|...|.
T Consensus 181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 6754444447889999999999998877642 135689999998877766663
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.93 E-value=6.4e-07 Score=89.51 Aligned_cols=267 Identities=12% Similarity=0.098 Sum_probs=160.1
Q ss_pred CCCEEEEEecCCeEEEEEeccccccccccccccccc-cccCCccEEEEEEcCCCCEEEEEeC------CCcEEEEEcCCc
Q 010324 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADET-FMMHDETVLCIEFSRDSEMLASGSQ------DGKIKVWRIRSG 296 (513)
Q Consensus 224 ~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~------dg~i~vwd~~~~ 296 (513)
++..+++++.|+.+ +.+|..+|+............ ......++ . .+..+++++. ++.|..+|..+|
T Consensus 114 ~~~~v~v~~~dg~l-~alD~~tG~~~W~~~~~~~~~~~~~~~~P~----v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG 186 (571)
T 2ad6_A 114 GAGQIVKKQANGHL-LALDAKTGKINWEVEVCDPKVGSTLTQAPF----V--AKDTVLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp ETTEEEEECTTSEE-EEEETTTCCEEEEEECCCGGGTCBCCSCCE----E--ETTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred ECCEEEEEeCCCEE-EEEECCCCCEEEEecCCCCCccceeccCCE----E--ECCEEEEEecCCccCCCCEEEEEECCCC
Confidence 35678888889999 499999998876554321000 00011111 1 1335555554 789999999999
Q ss_pred ceeeeccccccc-------------------------------------CeEEEEEccCCCEEEEeeCC-----------
Q 010324 297 QCLRRLERAHSE-------------------------------------GVTSLVFSRDGSQILSTSFD----------- 328 (513)
Q Consensus 297 ~~~~~~~~~~~~-------------------------------------~v~~~~~~~~~~~l~~~~~d----------- 328 (513)
+.+.++...... ....+++.++...++.++.+
T Consensus 187 ~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~g 266 (571)
T 2ad6_A 187 ELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPG 266 (571)
T ss_dssp CEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCS
T ss_pred cEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCC
Confidence 988766421110 00235666766677766532
Q ss_pred -----CcEEEEecCCCceeeEeccccc------ceeE---EEEccCCC---EEEEEeCCCcEEEEeCCCCceeEeecCCC
Q 010324 329 -----STARIHGLKSGKLLKEFRGHSS------YVND---AIFTNDGS---RVVTASSDCTVKVWDLKSTDCLQTFKPPP 391 (513)
Q Consensus 329 -----g~i~i~d~~~~~~~~~~~~~~~------~v~~---~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 391 (513)
+.|..+|.++|+.+..++.... .+.. +....+|+ .++.++.+|.+.++|..+++.+.......
T Consensus 267 d~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~ 346 (571)
T 2ad6_A 267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDP 346 (571)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred CceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccC
Confidence 3599999999999887753211 1112 22224674 57778899999999999999887665332
Q ss_pred CCC-------CCCcee--------------------------eEEEecCCCCCeEEEEc---------------------
Q 010324 392 PLR-------GGDASV--------------------------NSVHLFPKNPDHIVVCN--------------------- 417 (513)
Q Consensus 392 ~~~-------~~~~~v--------------------------~~~~~~~~~~~~l~~~~--------------------- 417 (513)
... ....++ ..++++|+. ..+++..
T Consensus 347 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~-g~~yv~~~~~~~~~~~~~~~~~~g~~~~ 425 (571)
T 2ad6_A 347 AVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES-RTLYAGLNHICMDWEPFMLPYRAGQFFV 425 (571)
T ss_dssp TCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT-TEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC-CEEEEEchhccccccccccccccCCccc
Confidence 100 000000 234556655 3443332
Q ss_pred ----------------CCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEee
Q 010324 418 ----------------KTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM 480 (513)
Q Consensus 418 ----------------~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 480 (513)
.++.+..+|.. ++.......... +....+...+..+++++.||.|+.+|.++|+.+..+
T Consensus 426 g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~----~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA----AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC----CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC----ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 35788999987 666555544321 111122234677888999999999999999999888
Q ss_pred ecccCC-eEEEEEcCCCCEEEEE
Q 010324 481 KVHEKD-VIGVTHHPHRNLLATY 502 (513)
Q Consensus 481 ~~h~~~-v~~~~~~p~~~~l~s~ 502 (513)
...... -..+.+..++..++..
T Consensus 502 ~~~~~~~~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 502 KMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEE
T ss_pred eCCCCcEeeeEEEEECCEEEEEE
Confidence 754321 1223455677655433
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.91 E-value=4.9e-06 Score=77.72 Aligned_cols=246 Identities=11% Similarity=0.029 Sum_probs=151.4
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS-QDGKIKVWR 292 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~vwd 292 (513)
+..+|.+..++ .+|+.+... .|+ ..++......... .....+..++|++.+..|+.+. ..+.|..++
T Consensus 34 d~~~C~~~~~~-~~ll~~~~~-~I~-~i~~~g~~~~~~~---------~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~ 101 (349)
T 3v64_C 34 DRRSCKALGPE-PVLLFANRI-DIR-QVLPHRSEYTLLL---------NNLENAIALDFHHRRELVFWSDVTLDRILRAN 101 (349)
T ss_dssp TSSCEEESSSC-CEEEEECBS-CEE-EECTTSCCEEEEE---------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCcccccccC-ceeEeeccc-ceE-EEeCCCCeeEEee---------cCCCceEEEEEeccccEEEEEeccCCceEEEe
Confidence 34567666664 345544433 464 5666544322111 1234588999998666665554 567899999
Q ss_pred cCCcceeeecccccccCeEEEEEccCCCEEE-EeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEe-CC
Q 010324 293 IRSGQCLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS-SD 370 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 370 (513)
+..+.....+. ........+++.+.+..|+ +-...+.|.+.++........+.........++++|.+..|..+. ..
T Consensus 102 ~~g~~~~~~~~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~ 180 (349)
T 3v64_C 102 LNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN 180 (349)
T ss_dssp TTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS
T ss_pred cCCCCceEEEe-CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC
Confidence 87655333332 2234457889987555554 445567899999865433333333345678999999665555444 44
Q ss_pred -CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEE
Q 010324 371 -CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAAC 449 (513)
Q Consensus 371 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 449 (513)
+.|..+++..... ..+.. ..-...+.+++.|.+..++++-...+.|..+++++.....+.... ......++
T Consensus 181 ~~~I~r~~~dG~~~-~~~~~-----~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gia 252 (349)
T 3v64_C 181 TPRIEASSMDGSGR-RIIAD-----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAIT 252 (349)
T ss_dssp SCEEEEEETTSCSC-EESCC-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEE
T ss_pred CCEEEEEeCCCCCc-EEEEE-----CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEE
Confidence 7788888764332 22211 123457899999887677777777889999999875544443322 23466777
Q ss_pred ECCCCCEEEEEecCceEEEEECCCceeeEeee
Q 010324 450 VSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK 481 (513)
Q Consensus 450 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 481 (513)
+ ..+...++-...+.|..++..+|+....+.
T Consensus 253 v-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 253 V-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp E-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred E-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 7 344455555578889999877776555544
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.91 E-value=2.3e-06 Score=85.54 Aligned_cols=270 Identities=16% Similarity=0.152 Sum_probs=159.5
Q ss_pred CCEEEEEecCCeEEEEEeccccccccccccccccc-cccCCccEEEEEEcCCCC-EEEEEe------CCCcEEEEEcCCc
Q 010324 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADET-FMMHDETVLCIEFSRDSE-MLASGS------QDGKIKVWRIRSG 296 (513)
Q Consensus 225 g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~-~l~s~~------~dg~i~vwd~~~~ 296 (513)
+..+++++.|+.+ +-+|..+|+............ ......++.. .=..+|+ .+++++ .+|.|..+|..+|
T Consensus 117 ~~~v~~~t~dg~l-~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG 194 (582)
T 1flg_A 117 GDKVFFGTLDASV-VALNKNTGKVVWKKKFADHGAGYTMTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG 194 (582)
T ss_dssp TTEEEEEETTTEE-EEEESSSCCEEEEEECSCGGGTCBCCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred CCEEEEEeCCCEE-EEEECCCCCEEeeecCCCCCcCcccccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence 5678888889999 599999998876554321110 0001122211 0001233 555554 3789999999999
Q ss_pred ceeeeccccc----------------------------------------ccCeEEEEEccCCCEEEEeeC---------
Q 010324 297 QCLRRLERAH----------------------------------------SEGVTSLVFSRDGSQILSTSF--------- 327 (513)
Q Consensus 297 ~~~~~~~~~~----------------------------------------~~~v~~~~~~~~~~~l~~~~~--------- 327 (513)
+.+....... ...-..+++.|+...+++++.
T Consensus 195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~ 274 (582)
T 1flg_A 195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence 9876543110 000013566677777776663
Q ss_pred -----------C----CcEEEEecCCCceeeEecc--ccc----ceeE-EEEc---cCCC---EEEEEeCCCcEEEEeCC
Q 010324 328 -----------D----STARIHGLKSGKLLKEFRG--HSS----YVND-AIFT---NDGS---RVVTASSDCTVKVWDLK 379 (513)
Q Consensus 328 -----------d----g~i~i~d~~~~~~~~~~~~--~~~----~v~~-~~~~---~~~~---~l~~~~~dg~i~iwd~~ 379 (513)
| +.|..+|.++|+.+..++. |.. .+.. +... .+|+ .++.++.+|.++++|.+
T Consensus 275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 5899999999999887753 211 1111 2222 4674 78889999999999999
Q ss_pred CCceeEeecCCCCCC----------------------------CCC-----------ceeeEEEecCCCCCeEEEE----
Q 010324 380 STDCLQTFKPPPPLR----------------------------GGD-----------ASVNSVHLFPKNPDHIVVC---- 416 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~----------------------------~~~-----------~~v~~~~~~~~~~~~l~~~---- 416 (513)
+++.+..+....... ... ..-..++++|....+++..
T Consensus 355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~ 434 (582)
T 1flg_A 355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK 434 (582)
T ss_dssp TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence 999887655432000 000 0011344555543322221
Q ss_pred ----------------------------cCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEE
Q 010324 417 ----------------------------NKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLY 467 (513)
Q Consensus 417 ----------------------------~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 467 (513)
..+|.+..||+. ++............+ ......+..+++|+.||.++
T Consensus 435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~----g~~~tagglvf~g~~dg~l~ 510 (582)
T 1flg_A 435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWA----GVLATAGNLVFTGTGDGYFK 510 (582)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCS----CCEEETTTEEEEECTTSEEE
T ss_pred eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcc----cceEeCCCEEEEECCCCcEE
Confidence 125788899987 666555543321111 11122467888899999999
Q ss_pred EEECCCceeeEeeecccCCe-EEEEEcCCCCEEE
Q 010324 468 CFSHQSGKLEHLMKVHEKDV-IGVTHHPHRNLLA 500 (513)
Q Consensus 468 iwd~~~~~~~~~~~~h~~~v-~~~~~~p~~~~l~ 500 (513)
.||.++|+.+..++...+.. .-+.|..+|+..+
T Consensus 511 A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 511 AFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 99999999998887654322 2256666776443
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.90 E-value=3.5e-06 Score=77.25 Aligned_cols=229 Identities=10% Similarity=0.039 Sum_probs=140.1
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCC--cEEEE
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG--KIKVW 291 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg--~i~vw 291 (513)
.....++|+++|+++++...++.|. .||...+ ...... ....+.++++.++|+++++..... .|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~-~~d~~g~-~~~~~~---------~~~~p~gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIV-SITPDGN-QQIHAT---------VEGKVSGLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEE-EECTTCC-EEEEEE---------CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEE-EECCCCc-eEEEEe---------CCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence 5678899999999777777888994 8887643 221111 234688999999999666554332 46677
Q ss_pred EcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce-eeEec---------ccccceeEEEEccCC
Q 010324 292 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL-LKEFR---------GHSSYVNDAIFTNDG 361 (513)
Q Consensus 292 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~---------~~~~~v~~~~~~~~~ 361 (513)
|..+++...............++..+++..+++-..++.|+.+|..+++. +.... ..-...+.+ ++++
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg 178 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG 178 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence 77777654322211223345555555554444444688999999865421 21110 111234455 7888
Q ss_pred CEEEEE-eCCCcEEEEeCCC-Cce--eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeec
Q 010324 362 SRVVTA-SSDCTVKVWDLKS-TDC--LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSS 437 (513)
Q Consensus 362 ~~l~~~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 437 (513)
+.|..+ ...+.|..||+.. +.. ...+. .......+++.+++ .++++....+.|.+++..+........
T Consensus 179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-------~~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~G~~~~~~~~ 250 (306)
T 2p4o_A 179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-------EQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQA 250 (306)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-------ESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECG
T ss_pred CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-------ccCCCCCeEECCCC-CEEEEeCCCCeEEEECCCCCEEEEeec
Confidence 766555 4578899999874 321 11111 01235667888877 677776778899999988655332111
Q ss_pred CccCCCcEEEEEEC---CCCCEEEEEecCc
Q 010324 438 GKREGGDFVAACVS---PKGEWIYCVGEDR 464 (513)
Q Consensus 438 ~~~~~~~~~~~~~s---~~~~~l~~g~~dg 464 (513)
.......++++|. |+++.|++.+..+
T Consensus 251 -~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 251 -EQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp -GGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred -ccccCCceEEEEecccCCCCEEEEECCCC
Confidence 1123457899998 8888887776543
No 262
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.90 E-value=5.9e-06 Score=76.05 Aligned_cols=236 Identities=11% Similarity=0.025 Sum_probs=143.9
Q ss_pred EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCC---cceeeec
Q 010324 227 FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS-QDGKIKVWRIRS---GQCLRRL 302 (513)
Q Consensus 227 ~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~vwd~~~---~~~~~~~ 302 (513)
+|+.+..+ .|+ ..|+.+......+. ....+..++|++.+..|+.+. .++.|..+++.. +.....+
T Consensus 3 ~ll~~~~~-~I~-~i~~~~~~~~~~~~---------~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~ 71 (316)
T 1ijq_A 3 YLFFTNRH-EVR-KMTLDRSEYTSLIP---------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV 71 (316)
T ss_dssp EEEEECBS-SEE-EEETTSCCCEEEEC---------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE
T ss_pred EEEEECCC-eEE-EEECCCcceEehhc---------CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE
Confidence 34444443 465 67777654332211 345678999998765555554 568999999875 1222222
Q ss_pred ccccccCeEEEEEccCCCEEE-EeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCC--CcEEEEeCC
Q 010324 303 ERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD--CTVKVWDLK 379 (513)
Q Consensus 303 ~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~ 379 (513)
....-.....+++.+.+..|+ +-...+.|.+.++........+.........++++|.+..|+.+... +.|..+++.
T Consensus 72 ~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d 151 (316)
T 1ijq_A 72 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (316)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence 212223457889987555555 44567899999986443333333334567899999966666555543 688888876
Q ss_pred CCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEE
Q 010324 380 STDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYC 459 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 459 (513)
. .....+.. ..-...+.+++.+++..++++-...+.|..+|+++.....+............+++. .+...++
T Consensus 152 G-~~~~~~~~-----~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~ 224 (316)
T 1ijq_A 152 G-VDIYSLVT-----ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWT 224 (316)
T ss_dssp S-CCEEEEEC-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEE
T ss_pred C-CCeEEEEE-----CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEE
Confidence 3 33333221 112467899999887667777777889999999876555444322223346677774 3555555
Q ss_pred EecCceEEEEECCCceeeEee
Q 010324 460 VGEDRNLYCFSHQSGKLEHLM 480 (513)
Q Consensus 460 g~~dg~i~iwd~~~~~~~~~~ 480 (513)
-...+.|..++..+++.+..+
T Consensus 225 d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 225 DIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp ETTTTEEEEEETTTCCCCEEE
T ss_pred ECCCCeEEEEeCCCCcceEEE
Confidence 557789999998777655444
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.88 E-value=4.9e-07 Score=90.45 Aligned_cols=284 Identities=13% Similarity=0.099 Sum_probs=164.8
Q ss_pred CCEEEEEecCCeEEEEEeccccccccccccccccccccCCcc-EEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecc
Q 010324 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDET-VLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE 303 (513)
Q Consensus 225 g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 303 (513)
+..+++++.++.+ +-+|..+|+.+................. -..++. .+..++.++.|+.+..+|..+|+.+.+..
T Consensus 68 ~g~vyv~~~~~~v-~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 68 DGVIYVTASYSRL-FALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TTEEEEEETTTEE-EEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CCEEEEEcCCCCE-EEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 4455555554447 4888888887766543211100000000 011122 25578888899999999999999887664
Q ss_pred ccccc---CeE-EEEEcc---CCC-EEEEee------CCCcEEEEecCCCceeeEecccccc------------------
Q 010324 304 RAHSE---GVT-SLVFSR---DGS-QILSTS------FDSTARIHGLKSGKLLKEFRGHSSY------------------ 351 (513)
Q Consensus 304 ~~~~~---~v~-~~~~~~---~~~-~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~------------------ 351 (513)
..... .+. ...... +|+ .+++++ .+|.|+.+|..+|+.+.........
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 22110 111 111111 233 566665 3789999999999987765421100
Q ss_pred -----------------------eeEEEEccCCCEEEEEeC--------------------C----CcEEEEeCCCCcee
Q 010324 352 -----------------------VNDAIFTNDGSRVVTASS--------------------D----CTVKVWDLKSTDCL 384 (513)
Q Consensus 352 -----------------------v~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~ 384 (513)
-..++++|+...++.++. | +.|..+|.++++..
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~ 304 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK 304 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence 023566677677776663 2 58999999999998
Q ss_pred EeecCCCC-C---CCCCceeeEEEec-CCCC--CeEEEEcCCCcEEEEEcc-CeEEEEeecCccC----------CC---
Q 010324 385 QTFKPPPP-L---RGGDASVNSVHLF-PKNP--DHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKRE----------GG--- 443 (513)
Q Consensus 385 ~~~~~~~~-~---~~~~~~v~~~~~~-~~~~--~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~----------~~--- 443 (513)
..+..... . .....++. +... .++. ..++.++.+|.++++|.. ++.+......... ..
T Consensus 305 W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~ 383 (582)
T 1flg_A 305 WFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE 383 (582)
T ss_dssp EEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred EEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence 88764321 0 01111111 1111 2332 367889999999999987 6665554432100 00
Q ss_pred -----------------------------cEEEEEECCCCCEEEEEe---------------------------------
Q 010324 444 -----------------------------DFVAACVSPKGEWIYCVG--------------------------------- 461 (513)
Q Consensus 444 -----------------------------~~~~~~~s~~~~~l~~g~--------------------------------- 461 (513)
....++++|+...+++..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~ 463 (582)
T 1flg_A 384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD 463 (582)
T ss_dssp CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence 001346677665555533
Q ss_pred cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEeccC
Q 010324 462 EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 462 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWdp 513 (513)
.+|.|+.||+.+++.+.....+. ++..-.....+.+++.++.||.++.||.
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEEC
Confidence 26889999999999887776432 2222112224677888999999999874
No 264
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=1e-05 Score=84.65 Aligned_cols=287 Identities=7% Similarity=0.013 Sum_probs=174.3
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccc--c----ccccccccCCccEEEEEEcCCCCEEEEEeCCC
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQ--Y----QADETFMMHDETVLCIEFSRDSEMLASGSQDG 286 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~--~----~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 286 (513)
...|.++...++|.+. .|+..+-+ .+++..++....... + .......-....|.++...++|. |..|+.++
T Consensus 257 ~~~i~~i~~d~~g~lW-igt~~~Gl-~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLW-IATELNGI-MILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTTSEEE-EEESSSCE-EEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSS
T ss_pred CceEEEEEECCCCCEE-EEeCCCCe-EEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCC
Confidence 3568999998888744 45553445 378877655332111 0 00000111456799999998886 66777777
Q ss_pred cEEEEEcCCcceeeec--------ccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe---cccccceeEE
Q 010324 287 KIKVWRIRSGQCLRRL--------ERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDA 355 (513)
Q Consensus 287 ~i~vwd~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~ 355 (513)
-|..++..++....-. .......|.++...++|. |..|+.++-|..||..++...... ......|.++
T Consensus 334 Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 334 GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 7899987765432211 001235689999887775 556776777899997655432211 1234568888
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEe
Q 010324 356 IFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSF 435 (513)
Q Consensus 356 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 435 (513)
...++|. |..|+.++.+..+|..+++... +... ......|.++...+++ .+.+++. +-+..++........+
T Consensus 413 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~---~~~~~~v~~i~~d~~g--~lwigt~-~Gl~~~~~~~~~~~~~ 484 (781)
T 3v9f_A 413 LKDSEGN-LWFGTYLGNISYYNTRLKKFQI-IELE---KNELLDVRVFYEDKNK--KIWIGTH-AGVFVIDLASKKVIHH 484 (781)
T ss_dssp EECTTSC-EEEEETTEEEEEECSSSCEEEE-CCST---TTCCCCEEEEEECTTS--EEEEEET-TEEEEEESSSSSCCEE
T ss_pred EECCCCC-EEEEeccCCEEEEcCCCCcEEE-eccC---CCCCCeEEEEEECCCC--CEEEEEC-CceEEEeCCCCeEEec
Confidence 8888776 5557776779999987765432 2211 1233567787776654 5666666 5688888875433333
Q ss_pred ecCc---cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeec---ccCCeEEEEEcCCCCEEEEEECCCeEE
Q 010324 436 SSGK---REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV---HEKDVIGVTHHPHRNLLATYGEDCTMK 509 (513)
Q Consensus 436 ~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~~~dg~i~ 509 (513)
.... .....+.+++..++|.+. .|+.++.++.||..+++....... ....|.++...++|.+.++. .+|.|.
T Consensus 485 ~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~ 562 (781)
T 3v9f_A 485 YDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVC 562 (781)
T ss_dssp ECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEE
T ss_pred ccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceE
Confidence 2211 113568889999988754 455545578899877654432211 23568999998888866654 467547
Q ss_pred eccC
Q 010324 510 LWKP 513 (513)
Q Consensus 510 iWdp 513 (513)
.|||
T Consensus 563 ~~d~ 566 (781)
T 3v9f_A 563 FPSA 566 (781)
T ss_dssp ESCT
T ss_pred EECC
Confidence 7775
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=9.8e-06 Score=84.80 Aligned_cols=285 Identities=9% Similarity=0.056 Sum_probs=173.9
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI 293 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~ 293 (513)
..|.++...++|.+.+. +.+| + .+||..+++...... ............|.++...++|. |..|+..+-|.++|.
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~G-l-~~~d~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSKG-L-ALFNANTETFTNFHN-NPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETTE-E-EEEETTTTEEEC------------CCCCEEEEEECTTSE-EEEEESSSCEEEEET
T ss_pred CceeEEEEcCCCCEEEE-eCCc-H-heECCCCCcEEEEEc-CCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECC
Confidence 56899999988876654 4444 6 388877665432111 00000001346799999988876 555666566888998
Q ss_pred CCcceeeecc-------------cccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEec---------ccccc
Q 010324 294 RSGQCLRRLE-------------RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR---------GHSSY 351 (513)
Q Consensus 294 ~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~ 351 (513)
.++....... ......|.++...++|. |-.|+.++-|..++..++....... .....
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKV 364 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSC
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcc
Confidence 7655321110 12345789999988875 6677777888999876554322110 12356
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeE
Q 010324 352 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV 431 (513)
Q Consensus 352 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 431 (513)
|.++...++|. |..|+.++-|..||..++... .+.... ......|.++...++ ..+.+++.++-+..++.....
T Consensus 365 v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~--~~~~~~v~~i~~d~~--g~lWigt~~~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 365 VSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI-YNKENR--ELLSNSVLCSLKDSE--GNLWFGTYLGNISYYNTRLKK 438 (781)
T ss_dssp EEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE-CC-------CCCSBEEEEEECTT--SCEEEEETTEEEEEECSSSCE
T ss_pred eEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE-EccCCC--CCCCcceEEEEECCC--CCEEEEeccCCEEEEcCCCCc
Confidence 88998888776 556665666999998754322 221111 123456888877655 456667777778889887655
Q ss_pred EEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecc-----cCCeEEEEEcCCCCEEEEEECCC
Q 010324 432 VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH-----EKDVIGVTHHPHRNLLATYGEDC 506 (513)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~~~~~p~~~~l~s~~~dg 506 (513)
...+.........+.+++..++|. |..|+. +.+..+|..+++........ ...|.++...++|.+.+....+|
T Consensus 439 ~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G 516 (781)
T 3v9f_A 439 FQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG 516 (781)
T ss_dssp EEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC
T ss_pred EEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC
Confidence 555543222345688888888876 455555 66899998877654332222 35789999988888666443345
Q ss_pred eEEeccC
Q 010324 507 TMKLWKP 513 (513)
Q Consensus 507 ~i~iWdp 513 (513)
+..|||
T Consensus 517 -l~~~~~ 522 (781)
T 3v9f_A 517 -VGIYTP 522 (781)
T ss_dssp -EEEECT
T ss_pred -EEEEeC
Confidence 655654
No 266
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.86 E-value=3.4e-07 Score=79.62 Aligned_cols=192 Identities=13% Similarity=0.059 Sum_probs=127.2
Q ss_pred ceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEeccccccee--EEEEccCCCEEEEEeCCCcEE
Q 010324 297 QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVN--DAIFTNDGSRVVTASSDCTVK 374 (513)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~dg~i~ 374 (513)
+.+.++..........+.|+ ++....+.+.+|.|+++|+.+++.+..+ -. .... .+++..+ +..+..-.++.+.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEEE
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEEE
Confidence 34555543334456788887 4556667778889999999999988877 22 2333 3555432 3444445688999
Q ss_pred EEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCcc--CCCcEEEEEEC
Q 010324 375 VWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKR--EGGDFVAACVS 451 (513)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~--~~~~~~~~~~s 451 (513)
+||..+.+.+.++.... . -..++ +++ ..++++..++.|.++|.. .+....+..... .-..++.+.|.
T Consensus 120 V~D~~Tl~~~~ti~~~~----e---GwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSG----E---GWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA 189 (268)
T ss_dssp EEETTTTEEEEEEECSS----C---CCCEE--EET-TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EEECCcCcEEEEEeCCC----c---eeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence 99999999999987532 1 12333 344 667777779999999987 455555444221 11234556666
Q ss_pred CCCCEEEEEecCceEEEEECCCceeeEeeecc-------------cCCeEEEEEcCCCCEEEEEE
Q 010324 452 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH-------------EKDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 452 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~~~p~~~~l~s~~ 503 (513)
+|+..+..-.++.|.+.|..+++.+..+... ....+.++|+|+++.|...|
T Consensus 190 -dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 190 -NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp -TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 6754444446889999999999988877532 13578999999766555554
No 267
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.85 E-value=1.3e-05 Score=76.33 Aligned_cols=246 Identities=11% Similarity=0.025 Sum_probs=150.9
Q ss_pred EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCcc---eeeec
Q 010324 227 FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS-QDGKIKVWRIRSGQ---CLRRL 302 (513)
Q Consensus 227 ~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~vwd~~~~~---~~~~~ 302 (513)
+|+.+. ...|+ ..++......... .....+..++|++.+..|+.+. ..+.|+.+++.... ....+
T Consensus 85 ~ll~~~-~~~I~-~i~l~~~~~~~~~---------~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~ 153 (400)
T 3p5b_L 85 YLFFTN-RHEVR-KMTLDRSEYTSLI---------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV 153 (400)
T ss_dssp EEEEEE-TTEEE-EECTTSCSCEEEE---------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEE
T ss_pred eeEEec-cceeE-EEccCCcceeEec---------cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEE
Confidence 454444 35675 6677654332211 1456788999999666665554 56789889876521 12222
Q ss_pred ccccccCeEEEEEccCCCEEE-EeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC--CCcEEEEeCC
Q 010324 303 ERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS--DCTVKVWDLK 379 (513)
Q Consensus 303 ~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~ 379 (513)
..........+++.+.+..|+ +-...+.|.+.++........+.........++++|.+.+|+.+.. .+.|...++.
T Consensus 154 ~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 154 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred EeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 212345678899988544554 4456788999998655444444434455789999997666665543 3789988886
Q ss_pred CCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEE
Q 010324 380 STDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYC 459 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 459 (513)
......... ..-...+.+++.+.+..++++-...+.|..+|+++.....+............+++. .+..+++
T Consensus 234 G~~~~~~~~------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywt 306 (400)
T 3p5b_L 234 GVDIYSLVT------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWT 306 (400)
T ss_dssp SCSCEEEEC------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEE
T ss_pred CCccEEEEE------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEe
Confidence 543322222 122467889999888666677677889999999976555554432223445677773 3344455
Q ss_pred EecCceEEEEECCCceeeEeeecccCCeEEE
Q 010324 460 VGEDRNLYCFSHQSGKLEHLMKVHEKDVIGV 490 (513)
Q Consensus 460 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 490 (513)
-...+.|..+|..+|+.+..+........++
T Consensus 307 d~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 307 DIINEAIFSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp ESSSCSEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred cCCCCeEEEEEcCCCCceEEEecCCCCCceE
Confidence 5577889999987886665554333333333
No 268
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.84 E-value=4.8e-07 Score=90.33 Aligned_cols=269 Identities=11% Similarity=0.088 Sum_probs=158.7
Q ss_pred EEECCCCCE----EEEEecCCeEEEEEeccccccccccccccccc-cccCCccEEEEEEcCCCCEEEEEe------CCCc
Q 010324 219 ARFSPDGQF----LVSCSFDGFIEVVWDYLSGKLKKDLQYQADET-FMMHDETVLCIEFSRDSEMLASGS------QDGK 287 (513)
Q Consensus 219 ~~~s~~g~~----la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~------~dg~ 287 (513)
++++|.+.. +++++.|+.+ +-+|..+|+............ ......++. . ++ .+++++ .+|.
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l-~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v----~-~g-~V~vg~~g~e~g~~g~ 183 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNV-AALNAETGETVWKVENSDIKVGSTLTIAPYV----V-KD-KVIIGSSGAELGVRGY 183 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEE-EEEETTTCCEEEEEECCCGGGTCBCCSCCEE----E-TT-EEEECCBCGGGTCCCE
T ss_pred eEEEecCCcceeEEEEEcCCCEE-EEEECCCCCEEEeecCCCCCccceeecCCEE----E-CC-EEEEEecccccCCCCe
Confidence 455444444 8888889999 489999998876544321100 000111111 1 34 455554 3799
Q ss_pred EEEEEcCCcceeeeccccccc------------------------------------Ce-EEEEEccCCCEEEEeeCC--
Q 010324 288 IKVWRIRSGQCLRRLERAHSE------------------------------------GV-TSLVFSRDGSQILSTSFD-- 328 (513)
Q Consensus 288 i~vwd~~~~~~~~~~~~~~~~------------------------------------~v-~~~~~~~~~~~l~~~~~d-- 328 (513)
|+.+|..+|+.+.++...... .+ ..+++.++...++.++.+
T Consensus 184 v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~ 263 (599)
T 1w6s_A 184 LTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPA 263 (599)
T ss_dssp EEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCS
T ss_pred EEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCc
Confidence 999999999988766522111 00 134566777788877665
Q ss_pred --------------CcEEEEecCCCceeeEecccccc------eeE---EEEc-cCC---CEEEEEeCCCcEEEEeCCCC
Q 010324 329 --------------STARIHGLKSGKLLKEFRGHSSY------VND---AIFT-NDG---SRVVTASSDCTVKVWDLKST 381 (513)
Q Consensus 329 --------------g~i~i~d~~~~~~~~~~~~~~~~------v~~---~~~~-~~~---~~l~~~~~dg~i~iwd~~~~ 381 (513)
+.|..+|.++|+.+..++..... ... +... .+| +.++.++.+|.+.++|.+++
T Consensus 264 p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 343 (599)
T 1w6s_A 264 PWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG 343 (599)
T ss_dssp CSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCC
Confidence 37999999999998877643211 111 2222 467 46777889999999999999
Q ss_pred ceeEeecCCCCCC-------CCCc--------------------------eeeEEEecCCCCCeEEEE------------
Q 010324 382 DCLQTFKPPPPLR-------GGDA--------------------------SVNSVHLFPKNPDHIVVC------------ 416 (513)
Q Consensus 382 ~~~~~~~~~~~~~-------~~~~--------------------------~v~~~~~~~~~~~~l~~~------------ 416 (513)
+.+.......... .... .-..++++|.. .++++.
T Consensus 344 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~ 422 (599)
T 1w6s_A 344 ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR-ELFFMGINHICMDWEPFM 422 (599)
T ss_dssp CEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT-TEEEEEEECEEEEEEECC
T ss_pred CEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC-CEEEEeccccceeeeccc
Confidence 9887654321000 0000 01123444443 222221
Q ss_pred ---------------------c------CCCcEEEEEcc-CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEE
Q 010324 417 ---------------------N------KTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYC 468 (513)
Q Consensus 417 ---------------------~------~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 468 (513)
+ ..|.+..||+. ++.+........ ...-.....+..++.++.||.++.
T Consensus 423 ~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagg~vf~gt~dg~l~A 498 (599)
T 1w6s_A 423 LPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA----VWGGTMATAGDLVFYGTLDGYLKA 498 (599)
T ss_dssp CCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC----CCSBCEEETTTEEEEECTTSEEEE
T ss_pred ccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCC----ccCcceEecCCEEEEECCCCeEEE
Confidence 1 34778888887 555555543221 111112235778888999999999
Q ss_pred EECCCceeeEeeecccCCe-EEEEEcCCCCEE
Q 010324 469 FSHQSGKLEHLMKVHEKDV-IGVTHHPHRNLL 499 (513)
Q Consensus 469 wd~~~~~~~~~~~~h~~~v-~~~~~~p~~~~l 499 (513)
||.++|+.+..++...+.+ .-+.|..+|+..
T Consensus 499 ~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 499 RDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred EECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 9999999998886543221 224455577643
No 269
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=98.83 E-value=9.6e-09 Score=71.21 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=34.7
Q ss_pred cccChhhHHHHHHHHHhhcChHHHHHHHHhhcCccccc
Q 010324 3 LEIEARDVIKIVLQFCKENSLQQTFQTLQNECQVSLNT 40 (513)
Q Consensus 3 ~~~~~~e~~~li~q~L~~~G~~~t~~~L~~Esg~~~~~ 40 (513)
|++.++||++||++||+|.||.+||.+|++||++.-.+
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~ 38 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSN 38 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence 57899999999999999999999999999999997654
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.81 E-value=7.1e-06 Score=77.80 Aligned_cols=254 Identities=10% Similarity=-0.001 Sum_probs=155.1
Q ss_pred eeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE-eCCCcEEEEEcC
Q 010324 216 AECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG-SQDGKIKVWRIR 294 (513)
Q Consensus 216 v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~i~vwd~~ 294 (513)
-.|.+..+ ..+|+.+.. ..|+ ..++..+...... .....+..++|++.+..|+.+ ...+.|..+++.
T Consensus 79 ~~C~~~~~-~~~l~~~~~-~~I~-~i~~~~~~~~~~~---------~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~ 146 (386)
T 3v65_B 79 RSCKALGP-EPVLLFANR-IDIR-QVLPHRSEYTLLL---------NNLENAIALDFHHRRELVFWSDVTLDRILRANLN 146 (386)
T ss_dssp SCEEECSS-CCEEEEECB-SCEE-EECTTSCCCEEEE---------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CeECCccc-cceeEeecC-ccce-eeccCCCcEEEEe---------cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 34555555 344554444 4564 6676654432211 133568899999865555554 456789999987
Q ss_pred CcceeeecccccccCeEEEEEccCCCEEE-EeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC-C-C
Q 010324 295 SGQCLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-D-C 371 (513)
Q Consensus 295 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g 371 (513)
.+.....+. ........+++.+.+..|+ +-...+.|.+.++........+.........++++|.+..|+.+.. . +
T Consensus 147 g~~~~~~~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~ 225 (386)
T 3v65_B 147 GSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP 225 (386)
T ss_dssp SCCEEEEEC-SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred CCCcEEEEe-CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCC
Confidence 655333332 2233456788887655555 4455678888888644333333333456789999987666655543 4 6
Q ss_pred cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEEC
Q 010324 372 TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVS 451 (513)
Q Consensus 372 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s 451 (513)
.|..+++.......... ..-...+.+++.|.+..++++-...+.|..+++++.....+.... ......+++
T Consensus 226 ~I~r~~~dG~~~~~~~~------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav- 296 (386)
T 3v65_B 226 RIEASSMDGSGRRIIAD------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV- 296 (386)
T ss_dssp EEEEEETTSCSCEEEEC------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-
T ss_pred EEEEEeCCCCCcEEEEE------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-
Confidence 78888876443222221 112357889999877677777777889999999865444443322 334667777
Q ss_pred CCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEE
Q 010324 452 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVT 491 (513)
Q Consensus 452 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 491 (513)
..+...++-...+.|..++..+|+....+........+++
T Consensus 297 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 336 (386)
T 3v65_B 297 FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 336 (386)
T ss_dssp ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence 3445555555788999999777776666554333334443
No 271
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.79 E-value=1.3e-06 Score=90.74 Aligned_cols=242 Identities=12% Similarity=0.010 Sum_probs=135.3
Q ss_pred ceeEEEEC-CCCCEEEEEecC-C----eEEEEEecccc-ccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC--
Q 010324 215 HAECARFS-PDGQFLVSCSFD-G----FIEVVWDYLSG-KLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD-- 285 (513)
Q Consensus 215 ~v~~~~~s-~~g~~la~g~~d-g----~i~~iwd~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-- 285 (513)
.+...+|| |||++||.+... | .|. ++|+.++ +.... .+ ......++|+|||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~-v~dl~~g~~~l~~-------~~---~~~~~~~~WspDg~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIE-FKRISDPSQTIAD-------KV---SGTNGEIVWGPDHTSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEE-EEETTCTTCCCCC-------CE---EEECSCCEECSSTTEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEE-EEECCCCCEeCCc-------cc---cCceeeEEEecCCCEEEEEEECCC
Confidence 67789999 999999876432 2 485 9999888 53211 01 1113468899999988887765
Q ss_pred ---CcEEEEEcCCccee--eecccccccCeEEEEEccCCCEEEEeeC---CCcEEEEecCCCc-ee--eEe-ccccccee
Q 010324 286 ---GKIKVWRIRSGQCL--RRLERAHSEGVTSLVFSRDGSQILSTSF---DSTARIHGLKSGK-LL--KEF-RGHSSYVN 353 (513)
Q Consensus 286 ---g~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~-~~~~~~v~ 353 (513)
..|.++++.++... ..+..........+.|+|||++|+..+. ...|+++|+.++. .. ..+ ........
T Consensus 244 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~ 323 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRY 323 (751)
T ss_dssp CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCE
T ss_pred CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceE
Confidence 26888888776422 2222122345678899999999887653 3468889987752 12 333 22334445
Q ss_pred EEEEccCCCEEEEEe-CC----CcEEEEeCCCCceeEe-ecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc--EEEE
Q 010324 354 DAIFTNDGSRVVTAS-SD----CTVKVWDLKSTDCLQT-FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS--IYIM 425 (513)
Q Consensus 354 ~~~~~~~~~~l~~~~-~d----g~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~--i~i~ 425 (513)
++.|+. |..|+..+ .+ ..|..+|+.++..... +... .....+..+.+. +..++++...++. ++++
T Consensus 324 s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~----~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 324 DVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH----SEDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp EEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC----CSSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred EEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC----CCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 555544 55554443 33 2577777764211111 1111 112245555554 4356666777775 5556
Q ss_pred Ec-------cCeE-EEEeecCccCCCcEEEEEE----CCCCC-EEEEEecC---ceEEEEECCCcee
Q 010324 426 TL-------QGQV-VKSFSSGKREGGDFVAACV----SPKGE-WIYCVGED---RNLYCFSHQSGKL 476 (513)
Q Consensus 426 d~-------~~~~-~~~~~~~~~~~~~~~~~~~----s~~~~-~l~~g~~d---g~i~iwd~~~~~~ 476 (513)
++ .+.. ...+.... ...+..+.+ ++++. ++++.+.. +.++.+|+.+++.
T Consensus 397 dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 397 MADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp ECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred ecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 64 3322 33332111 122333322 34554 44444432 4688888877653
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.79 E-value=1.3e-05 Score=74.82 Aligned_cols=233 Identities=9% Similarity=-0.013 Sum_probs=146.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEee-CCCcEEEEecCCCceeeEe
Q 010324 267 VLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKSGKLLKEF 345 (513)
Q Consensus 267 v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~ 345 (513)
.+|.+..++ .+|+.+. ...|+..++.......... ....+..++|++.+..|+.+. ..+.|..+++..+......
T Consensus 36 ~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccC-ceeEeec-ccceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 345555553 3444443 4468888876554433332 344588999998666666554 5678999998765543333
Q ss_pred cccccceeEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC-CcEE
Q 010324 346 RGHSSYVNDAIFTNDGS-RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-SSIY 423 (513)
Q Consensus 346 ~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-~~i~ 423 (513)
.........+++.+.+. .+++-...+.|.+.++........+. ..-.....+++.|.++.++++-... +.|.
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~------~~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW------QSLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------TTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe------CCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 33334567899997544 44555567889999987543222221 1224568899999775666666666 8899
Q ss_pred EEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEE
Q 010324 424 IMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATY 502 (513)
Q Consensus 424 i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 502 (513)
.+++++.....+... .......++++|++..|+.+. ..+.|..+|.........+........++++. .+.++++-
T Consensus 186 r~~~dG~~~~~~~~~--~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td 262 (349)
T 3v64_C 186 ASSMDGSGRRIIADT--HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTD 262 (349)
T ss_dssp EEETTSCSCEESCCS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEE
T ss_pred EEeCCCCCcEEEEEC--CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEec
Confidence 999987655544322 234578999998777776665 56789999987544333333334456777773 44555555
Q ss_pred ECCCeEEecc
Q 010324 503 GEDCTMKLWK 512 (513)
Q Consensus 503 ~~dg~i~iWd 512 (513)
...+.|...+
T Consensus 263 ~~~~~V~~~~ 272 (349)
T 3v64_C 263 WHTKSINSAN 272 (349)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEEEE
Confidence 5566665543
No 273
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.79 E-value=0.0001 Score=68.09 Aligned_cols=278 Identities=10% Similarity=0.041 Sum_probs=152.3
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 290 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~v 290 (513)
.....+.++.|.+++..+|+| .+|.| +...+.|+.-...... .......+.++.|.+ +..++ ++.++.|..
T Consensus 33 ~~~~~~~~v~~~~~~~~~~~G-~~g~i--~~s~DgG~tW~~~~~~----~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~ 103 (327)
T 2xbg_A 33 PTTATILDMSFIDRHHGWLVG-VNATL--METRDGGQTWEPRTLV----LDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH 103 (327)
T ss_dssp SCSSCEEEEEESSSSCEEEEE-TTTEE--EEESSTTSSCEECCCC----CSCCCCEEEEEEEET-TEEEE-EEETTEEEE
T ss_pred CCCCcEEEEEECCCCcEEEEc-CCCeE--EEeCCCCCCCeECCCC----CCCCCccEEEEEecC-CeEEE-EECCCeEEE
Confidence 334578999999888888855 56754 4444444322211110 011245688999986 44444 455664443
Q ss_pred EEcCCcceeeeccc--ccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEe-cccccceeEEEEccCCCEEEEE
Q 010324 291 WRIRSGQCLRRLER--AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF-RGHSSYVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 291 wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~ 367 (513)
....|+.-..... .....+..+.+.+++..++++ .+|.|..- ...|+.-... ......+..+.+.+++.+++++
T Consensus 104 -S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g 180 (327)
T 2xbg_A 104 -TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS 180 (327)
T ss_dssp -ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE
T ss_pred -ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE
Confidence 2233444333321 123457788887777655554 46654331 2234322222 2345568899999988877665
Q ss_pred eCCCcEEE-EeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecC-ccCCCc
Q 010324 368 SSDCTVKV-WDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSG-KREGGD 444 (513)
Q Consensus 368 ~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~-~~~~~~ 444 (513)
. +|.+.. .|- .+..-..+.. .....+..+.+.+++ . +++.+.+|.++..+.+ +......... ......
T Consensus 181 ~-~G~~~~S~d~-gG~tW~~~~~-----~~~~~~~~~~~~~~g-~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~ 251 (327)
T 2xbg_A 181 S-RGSFYSTWEP-GQTAWEPHNR-----TTSRRLHNMGFTPDG-R-LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVG 251 (327)
T ss_dssp T-TSSEEEEECT-TCSSCEEEEC-----CSSSCEEEEEECTTS-C-EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSC
T ss_pred C-CCcEEEEeCC-CCCceeECCC-----CCCCccceeEECCCC-C-EEEEeCCceEEEecCCCCCeeEeccCCcccCCcc
Confidence 4 454443 332 1221111111 123467788887765 4 4455567877776544 4433333222 112235
Q ss_pred EEEEEECCCCCEEEEEecCceEEEEECCCceeeEeee---cccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 445 FVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK---VHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 445 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+..+.+.+++..++++. +|.+ .+....|+.-..+. .....+.++.|.+++ .++.++.+|.|.-++
T Consensus 252 ~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred eEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 78888988887666655 6766 34444454333332 123567889887554 466777899887765
No 274
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.79 E-value=2.9e-06 Score=73.24 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=125.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCC--CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEE-eeCCCcEEEEecCCCce
Q 010324 265 ETVLCIEFSRDSEMLASGSQD--GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILS-TSFDSTARIHGLKSGKL 341 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~ 341 (513)
.-...+.|++ +.+..+.+.+ +.|+.+|+.+++.+.++.......--.++.. ++.|+. .-.++.+.+||..+.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence 4577899986 5556666654 4899999999999888753222222334443 445544 45688999999999999
Q ss_pred eeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc
Q 010324 342 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 421 (513)
Q Consensus 342 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 421 (513)
+.++..... -.. +.+++..|+.+..++.|.++|..+.+...++.....-. .-..++.+.+. ++ ..++....+..
T Consensus 98 ~~ti~~~~~-Gwg--lt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~-~~~~lNeLe~~-~G-~lyanvw~s~~ 171 (243)
T 3mbr_X 98 RARFRYPGE-GWA--LTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR-PLDNLNELEWV-NG-ELLANVWLTSR 171 (243)
T ss_dssp EEEEECSSC-CCE--EEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE-ECCCEEEEEEE-TT-EEEEEETTTTE
T ss_pred EEEEeCCCC-ceE--EeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc-ccccceeeEEe-CC-EEEEEECCCCe
Confidence 998875432 233 44667777777788999999999999888876432100 01233455554 22 45555557889
Q ss_pred EEEEEcc-CeEEEEeecCc----------cCCCcEEEEEECCCCCEEEEEe
Q 010324 422 IYIMTLQ-GQVVKSFSSGK----------REGGDFVAACVSPKGEWIYCVG 461 (513)
Q Consensus 422 i~i~d~~-~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~l~~g~ 461 (513)
|.+.|.. ++.+..+.... ......+.++++|+++.|++.+
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 9999997 56666555331 1234567899999877776665
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=4.2e-06 Score=80.52 Aligned_cols=238 Identities=9% Similarity=0.093 Sum_probs=147.0
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC-C----cEEEEecCCC
Q 010324 266 TVLCIEFSR-DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD-S----TARIHGLKSG 339 (513)
Q Consensus 266 ~v~~l~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g----~i~i~d~~~~ 339 (513)
....++++| ++..|+.+...+.|+.+|+.++...... ........++|+++++.|+++... + .+..++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 567899998 4666777766588999998776543333 245568899999999977766542 2 2333443 33
Q ss_pred cee--eEecccccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE
Q 010324 340 KLL--KEFRGHSSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 340 ~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 416 (513)
... ..+. .......++++| +|..+++-..++.|..++...+........ ........++++|++..++++-
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-----~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI-----QDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC-----SSSSCCEEEEECTTSSEEEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc-----CCCCcceeEEEcCCCCEEEEEE
Confidence 322 2222 223467889999 677666666788999999986654222221 1123567899999984467777
Q ss_pred cCCCcEEEEEccCe--E---EEEeecC--c----------cCCCcEE-EEEEC--------CCCCEEEEEecCceEEEEE
Q 010324 417 NKTSSIYIMTLQGQ--V---VKSFSSG--K----------REGGDFV-AACVS--------PKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 417 ~~~~~i~i~d~~~~--~---~~~~~~~--~----------~~~~~~~-~~~~s--------~~~~~l~~g~~dg~i~iwd 470 (513)
...+.|..++.++. . ...+... . ..-.... .++.. ++|.+.++-...+.|+.++
T Consensus 289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 78889999887742 1 1122111 0 0001123 45553 4465555555778899988
Q ss_pred CCCceeeEeeec----c----c---------CCeEEEEEcC-CCCEEEEEECCCeEEeccC
Q 010324 471 HQSGKLEHLMKV----H----E---------KDVIGVTHHP-HRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 471 ~~~~~~~~~~~~----h----~---------~~v~~~~~~p-~~~~l~s~~~dg~i~iWdp 513 (513)
.+|........ . . .....++++| ++.++++-..+++|+..+|
T Consensus 369 -~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 369 -PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp -TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred -CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 45654433221 0 1 2478999999 4666666667778887653
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.75 E-value=3.7e-05 Score=70.64 Aligned_cols=223 Identities=11% Similarity=-0.022 Sum_probs=139.9
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEee-CCCcEEEEecCC----CceeeEecccccce
Q 010324 278 MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKS----GKLLKEFRGHSSYV 352 (513)
Q Consensus 278 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~----~~~~~~~~~~~~~v 352 (513)
+|+.+. ...|+..|+.+......+. ....+..++|++++..|+.+. .++.|..+++.. ......+......+
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 344443 3568999988776554443 345678999998766666554 568899999865 22222232223456
Q ss_pred eEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC-CcEEEEEccCe
Q 010324 353 NDAIFTNDGS-RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-SSIYIMTLQGQ 430 (513)
Q Consensus 353 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-~~i~i~d~~~~ 430 (513)
..+++++.+. .+++-...+.|.++|+........+. ........+++.|.++.++++.... +.|...++++.
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~ 153 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 153 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC
Confidence 8899987544 44555667899999987543322222 1123568899998775555555444 78999999877
Q ss_pred EEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeec--ccCCeEEEEEcCCCCEEEEEECCCe
Q 010324 431 VVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKV--HEKDVIGVTHHPHRNLLATYGEDCT 507 (513)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~~~dg~ 507 (513)
....+... .-.....+++++++..|+.+. ..+.|..+|............ .......+++. .+.++++-...+.
T Consensus 154 ~~~~~~~~--~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~ 230 (316)
T 1ijq_A 154 DIYSLVTE--NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 230 (316)
T ss_dssp CEEEEECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred CeEEEEEC--CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCe
Confidence 65554332 234578999999887777666 567999999875433222221 22346677775 4555556556677
Q ss_pred EEecc
Q 010324 508 MKLWK 512 (513)
Q Consensus 508 i~iWd 512 (513)
|..++
T Consensus 231 V~~~~ 235 (316)
T 1ijq_A 231 IFSAN 235 (316)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77665
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.71 E-value=9.3e-06 Score=78.08 Aligned_cols=240 Identities=8% Similarity=0.049 Sum_probs=147.9
Q ss_pred ccEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCC-----cEEEEecC
Q 010324 265 ETVLCIEFSRD--SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS-----TARIHGLK 337 (513)
Q Consensus 265 ~~v~~l~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~ 337 (513)
.....++|+|+ +..|+.+...+.|+.+|..++...... ........++++++|+ |+++...+ .+...+..
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 34678999994 455666655589999998877755443 3445689999999999 55554322 23333332
Q ss_pred CCce-eeEecccccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEE
Q 010324 338 SGKL-LKEFRGHSSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV 415 (513)
Q Consensus 338 ~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 415 (513)
.+.. ...+. .......++++| +|..+++-..++.|+.+|..++.....+.... .......++++|++..++++
T Consensus 216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~----~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD----TKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS----CCSSCEEEEECTTSSEEEEE
T ss_pred CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC----CCCCcccEEEeCCCCEEEEE
Confidence 2211 01111 233467789999 67666666677889999998776523222111 11223469999998446677
Q ss_pred EcCCCcEEEEEccC--eE---EEEeecC--c----------cCCCcEEEEEE---------CCCCCEEEEEecCceEEEE
Q 010324 416 CNKTSSIYIMTLQG--QV---VKSFSSG--K----------REGGDFVAACV---------SPKGEWIYCVGEDRNLYCF 469 (513)
Q Consensus 416 ~~~~~~i~i~d~~~--~~---~~~~~~~--~----------~~~~~~~~~~~---------s~~~~~l~~g~~dg~i~iw 469 (513)
-...+.|+.++.++ .. ...+... . ..-.....+++ .++|.+.++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 77788999988762 11 1122111 0 01123567888 7777777777778899999
Q ss_pred ECCCceeeEeeec-----------------ccCCeEEEEEc-CCCCEEEEEECCCeEEeccC
Q 010324 470 SHQSGKLEHLMKV-----------------HEKDVIGVTHH-PHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 470 d~~~~~~~~~~~~-----------------h~~~v~~~~~~-p~~~~l~s~~~dg~i~iWdp 513 (513)
+. +|........ .-.....++++ +++.++++=..+++|+..++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 85 5644332211 01237789999 57777766667788887653
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.70 E-value=1.4e-05 Score=75.72 Aligned_cols=232 Identities=9% Similarity=-0.018 Sum_probs=146.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEe-eCCCcEEEEecCCCceeeEec
Q 010324 268 LCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDSTARIHGLKSGKLLKEFR 346 (513)
Q Consensus 268 ~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~ 346 (513)
.|.+..+. .+|+.+. ...|+..++..+....... ....+..++|.+.+..|+.+ ...+.|..+++..+.....+.
T Consensus 80 ~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 80 SCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp CEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred eECCcccc-ceeEeec-CccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 34454553 3444443 4578888887655433332 34568899999866666655 456789999987665443333
Q ss_pred ccccceeEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC-CcEEE
Q 010324 347 GHSSYVNDAIFTNDGS-RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-SSIYI 424 (513)
Q Consensus 347 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-~~i~i 424 (513)
........+++.+.+. .+++-...+.|.+.++........+. ..-.....+++.|.+..++++-... +.|..
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~------~~l~~P~giavdp~~g~ly~td~~~~~~I~r 229 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEA 229 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC------SSCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence 3334567889997554 44555567789998887543222221 1224568899998875666666555 78999
Q ss_pred EEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEE
Q 010324 425 MTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 425 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 503 (513)
+++++.....+.... -.....++++|++..|+.+. ..+.|..+|+........+........++++ ..+.++++-.
T Consensus 230 ~~~dG~~~~~~~~~~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~ 306 (386)
T 3v65_B 230 SSMDGSGRRIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDW 306 (386)
T ss_dssp EETTSCSCEEEECSS--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEET
T ss_pred EeCCCCCcEEEEECC--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeC
Confidence 999876555443321 23477899998777776665 5678999998754443334333445677887 3455555655
Q ss_pred CCCeEEecc
Q 010324 504 EDCTMKLWK 512 (513)
Q Consensus 504 ~dg~i~iWd 512 (513)
..+.|..++
T Consensus 307 ~~~~V~~~~ 315 (386)
T 3v65_B 307 HTKSINSAN 315 (386)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 666776654
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.64 E-value=3.4e-05 Score=70.79 Aligned_cols=236 Identities=9% Similarity=-0.005 Sum_probs=143.3
Q ss_pred EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCcceeeecccc
Q 010324 227 FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG-SQDGKIKVWRIRSGQCLRRLERA 305 (513)
Q Consensus 227 ~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~ 305 (513)
+|+.+. ...|+ ..++........... .....+..++|++.+..|+.+ ...+.|..+++..+.....+...
T Consensus 6 ~ll~~~-~~~I~-~i~l~~~~~~~~~~~-------~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~ 76 (318)
T 3sov_A 6 LLLYAN-RRDLR-LVDATNGKENATIVV-------GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS 76 (318)
T ss_dssp EEEEEC-EEEEE-EEETTCTTSCCEEEE-------EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE
T ss_pred EEEEEc-cCeEE-EEECCCCceEEEEEe-------cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC
Confidence 344433 34575 777765431111111 122456789999855555444 45678999998765422222112
Q ss_pred cccCeEEEEEccCCCEEE-EeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC--CCcEEEEeCCCCc
Q 010324 306 HSEGVTSLVFSRDGSQIL-STSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS--DCTVKVWDLKSTD 382 (513)
Q Consensus 306 ~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~ 382 (513)
.-.....+++.+.+..|+ +-...+.|.++++..................+++.|.+..|+.+.. .+.|...++....
T Consensus 77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 156 (318)
T 3sov_A 77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS 156 (318)
T ss_dssp CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC
Confidence 224567788987555554 4456688999998644332223334456789999997666665553 5788888876432
Q ss_pred eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEec
Q 010324 383 CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGE 462 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 462 (513)
...+.. ..-...+.+++++++..++++-...+.|..+++++.....+... .......+++.. +..+++-..
T Consensus 157 -~~~~~~-----~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~ 227 (318)
T 3sov_A 157 -RFIIIN-----SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWS 227 (318)
T ss_dssp -CEEEEC-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETT
T ss_pred -eEEEEE-----CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecC
Confidence 222211 11235689999998767777777889999999987555444432 234466777753 344455557
Q ss_pred CceEEEEECCCceeeEee
Q 010324 463 DRNLYCFSHQSGKLEHLM 480 (513)
Q Consensus 463 dg~i~iwd~~~~~~~~~~ 480 (513)
.+.|..++..+|+....+
T Consensus 228 ~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 228 THSILACNKYTGEGLREI 245 (318)
T ss_dssp TTEEEEEETTTCCSCEEE
T ss_pred CCeEEEEECCCCCceEEE
Confidence 789999998777655444
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.64 E-value=6.1e-05 Score=65.96 Aligned_cols=205 Identities=13% Similarity=0.151 Sum_probs=128.2
Q ss_pred ccccCeEEEEEccCCCEEE-EeeCCCcEEEEecCCCceeeEeccc-ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 010324 305 AHSEGVTSLVFSRDGSQIL-STSFDSTARIHGLKSGKLLKEFRGH-SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 382 (513)
Q Consensus 305 ~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 382 (513)
+-...+..++|+|++..|+ +...++.|...|.. ++.+..+.-. ....-.+++.+++.++++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 4445799999999876655 56778899999986 8887776422 2457788999888776766677889999876554
Q ss_pred e---eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC-cEEEEEc--cCeEEEEeec----CccCCCcEEEEEECC
Q 010324 383 C---LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS-SIYIMTL--QGQVVKSFSS----GKREGGDFVAACVSP 452 (513)
Q Consensus 383 ~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-~i~i~d~--~~~~~~~~~~----~~~~~~~~~~~~~s~ 452 (513)
. ......+............+++.|.+..++++...+. .|+.|+- .+..+..... .......+..++++|
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 2 2333221111233556789999998744555444443 4444441 1111222111 011223467888988
Q ss_pred CCCE-EEEEecCceEEEEECCCceeeEeeeccc---------CCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 453 KGEW-IYCVGEDRNLYCFSHQSGKLEHLMKVHE---------KDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 453 ~~~~-l~~g~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.... ++.......+.++|.. |+++..+.-.. .....|+|.|+|++.++ +..+.++++.
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred CCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 6554 4555577789999965 55655544221 24679999999986655 6666666554
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.62 E-value=2.3e-05 Score=75.32 Aligned_cols=244 Identities=10% Similarity=0.030 Sum_probs=137.9
Q ss_pred ceeEEEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC-C----cE
Q 010324 215 HAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD-G----KI 288 (513)
Q Consensus 215 ~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-g----~i 288 (513)
....++++| ++..|.++...+.|+ .+|...+....... .......++|+++|++|+.+... + .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~-~id~~~~~v~~~~~---------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v 207 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTR-LIDFEKEYVSTVYS---------GLSKVRTICWTHEADSMIITNDQNNNDRPNN 207 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEE-EEETTTTEEEEEEC---------CCSCEEEEEECTTSSEEEEEECCSCTTSEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEE-EEECCCCEEEEEec---------CCCCcceEEEeCCCCEEEEEeCCCCcccceE
Confidence 457899998 456666666557785 88887655432211 34568899999999966666542 2 23
Q ss_pred EEEEcCCccee--eecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCceeeEecc-cccceeEEEEccCCCEE
Q 010324 289 KVWRIRSGQCL--RRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRG-HSSYVNDAIFTNDGSRV 364 (513)
Q Consensus 289 ~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 364 (513)
...+ ..+... ..+. .......++++| ++..+++-..++.|..++..++........ .......++|+|+|++|
T Consensus 208 ~~~~-~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 208 YILT-RESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp EEEE-GGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred EEEe-CCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 3344 334322 2221 233456788999 666666666778999999876654222221 22357789999999955
Q ss_pred EE-EeCCCcEEEEeCCC--Cce--eEeecCCCCCCCC---------Cceee-EEEecC-------CCCCeEEEEcCCCcE
Q 010324 365 VT-ASSDCTVKVWDLKS--TDC--LQTFKPPPPLRGG---------DASVN-SVHLFP-------KNPDHIVVCNKTSSI 422 (513)
Q Consensus 365 ~~-~~~dg~i~iwd~~~--~~~--~~~~~~~~~~~~~---------~~~v~-~~~~~~-------~~~~~l~~~~~~~~i 422 (513)
.. -...+.|..++... +.. ...+.......+. -.... .+...+ ....++++-...+.|
T Consensus 285 yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I 364 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364 (430)
T ss_dssp EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence 44 45678899987653 211 1111110000000 01122 344432 112455555566788
Q ss_pred EEEEccCeEEEEeecC---cc-----------CCCcEEEEEECCC-CCEEEEEecCceEEEEEC
Q 010324 423 YIMTLQGQVVKSFSSG---KR-----------EGGDFVAACVSPK-GEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 423 ~i~d~~~~~~~~~~~~---~~-----------~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~ 471 (513)
+.++..+......-.. .. .-.....++++|+ +.++++-..++.|+.++.
T Consensus 365 ~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 365 RILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 8888666443333221 00 0124678899885 544444446677877765
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.62 E-value=3.5e-05 Score=74.06 Aligned_cols=244 Identities=9% Similarity=0.050 Sum_probs=137.8
Q ss_pred CceeEEEECCC--CCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCC----c
Q 010324 214 SHAECARFSPD--GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG----K 287 (513)
Q Consensus 214 ~~v~~~~~s~~--g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg----~ 287 (513)
.....++|+|+ +..|..+...+.|+ .+|..++...... .......+++|+++|+ |+.+...+ .
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~-~id~~~g~v~~~~---------~~~~~P~giavd~dG~-lyVad~~~~~~~~ 207 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFR-HVDFVNQYVDIKT---------TNIGQCADVNFTLNGD-MVVVDDQSSDTNT 207 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEE-EEETTTTEEEEEC---------CCCSCEEEEEECTTCC-EEEEECCSCTTSE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEE-EEECCCCEEEEee---------cCCCCccEEEECCCCC-EEEEcCCCCcccc
Confidence 34678999994 44555555447885 8888776654322 1345689999999999 55544322 1
Q ss_pred -EEEEEcCCccee-eecccccccCeEEEEEcc-CCCEEEEeeCCCcEEEEecCCCceeeEecc--cccceeEEEEccCCC
Q 010324 288 -IKVWRIRSGQCL-RRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRG--HSSYVNDAIFTNDGS 362 (513)
Q Consensus 288 -i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~ 362 (513)
+...+...+... ..+ ........++++| +|...++-..++.|+.+|..++.....+.. .......++|+|+++
T Consensus 208 gv~~~~~~~~~~~~~~~--~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 208 GIYLFTRASGFTERLSL--CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD 285 (433)
T ss_dssp EEEEECGGGTTCCEEEE--EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred eEEEEECCCCeeccccc--cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence 333332221110 111 1233456788999 666555555678899999877765232211 122234699999999
Q ss_pred EEEEE-eCCCcEEEEeCC--CCce--eEeecCCCCCCC---------CCceeeEEEe---------cCCCCCeEEEEcCC
Q 010324 363 RVVTA-SSDCTVKVWDLK--STDC--LQTFKPPPPLRG---------GDASVNSVHL---------FPKNPDHIVVCNKT 419 (513)
Q Consensus 363 ~l~~~-~~dg~i~iwd~~--~~~~--~~~~~~~~~~~~---------~~~~v~~~~~---------~~~~~~~l~~~~~~ 419 (513)
+|..+ ...+.|+.++.. ++.. ...+.......+ .-.....+++ .+.+ .++++-..+
T Consensus 286 ~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n 364 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDS 364 (433)
T ss_dssp EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTT
T ss_pred EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCC
Confidence 55554 456889998865 2221 111111000000 1123566777 3433 566666677
Q ss_pred CcEEEEEccCeEEEEeecCcc---------------CCCcEEEEEEC-CCCCEEEEEecCceEEEEECC
Q 010324 420 SSIYIMTLQGQVVKSFSSGKR---------------EGGDFVAACVS-PKGEWIYCVGEDRNLYCFSHQ 472 (513)
Q Consensus 420 ~~i~i~d~~~~~~~~~~~~~~---------------~~~~~~~~~~s-~~~~~l~~g~~dg~i~iwd~~ 472 (513)
+.|+.++..+... .+..... .-.....++++ ++|.++++-..++.|+.++++
T Consensus 365 ~~I~~~~~~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 365 HTVRVLTPEGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TEEEEECTTSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CEEEEECCCCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 8899998776433 3322110 01236678888 555555555566677777653
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=8.3e-06 Score=84.61 Aligned_cols=195 Identities=12% Similarity=0.135 Sum_probs=113.0
Q ss_pred cEEEEEEc-CCCCEEEEEeC-CC----cEEEEEcCCc-ceeeecccccccCeEEEEEccCCCEEEEeeCC-----CcEEE
Q 010324 266 TVLCIEFS-RDSEMLASGSQ-DG----KIKVWRIRSG-QCLRRLERAHSEGVTSLVFSRDGSQILSTSFD-----STARI 333 (513)
Q Consensus 266 ~v~~l~~~-~~~~~l~s~~~-dg----~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i 333 (513)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+... .......++|+|||+.|+....+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998886643 23 4999999998 632211 11123468999999988877765 25888
Q ss_pred EecCCCce--eeEec-ccccceeEEEEccCCCEEEEEeC---CCcEEEEeCCCCc-ee--EeecCCCCCCCCCceeeEEE
Q 010324 334 HGLKSGKL--LKEFR-GHSSYVNDAIFTNDGSRVVTASS---DCTVKVWDLKSTD-CL--QTFKPPPPLRGGDASVNSVH 404 (513)
Q Consensus 334 ~d~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~~~~~~~~~~~~~v~~~~ 404 (513)
+++.++.. ...+. .......++.|+|||++|+..+. ...|.++|+.++. .. ..+.. .......++.
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-----~~~~~~~s~~ 326 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-----REKGVRYDVQ 326 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-----CCTTCCEEEE
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-----CCCCceEEEe
Confidence 88877642 22222 22334667899999998887663 3458888988752 11 22221 1223344454
Q ss_pred ecCCCCCeEEEEcCC----CcEEEEEccC-eEEEE-eecCccCCCcEEEEEECCCCCEEEEEecCce--EEEEEC
Q 010324 405 LFPKNPDHIVVCNKT----SSIYIMTLQG-QVVKS-FSSGKREGGDFVAACVSPKGEWIYCVGEDRN--LYCFSH 471 (513)
Q Consensus 405 ~~~~~~~~l~~~~~~----~~i~i~d~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~--i~iwd~ 471 (513)
|+. +..+++....+ ..|..+++.+ ..... +.... ....+..+.+. .+.++++...+|. |+++++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 433 43555555543 3566667653 22122 22211 11233445554 2344555666775 556665
No 284
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.54 E-value=0.00039 Score=64.48 Aligned_cols=251 Identities=10% Similarity=0.114 Sum_probs=162.5
Q ss_pred CCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEE
Q 010324 234 DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSL 313 (513)
Q Consensus 234 dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 313 (513)
+..+ +|-|+.++....+.+. .--+.-.+|..+.+|.-. ..++.++|+++.+.++.+. ....|.-=
T Consensus 47 ~~~v-vIiDl~~~~~~~rrpi-----------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfW 111 (494)
T 1bpo_A 47 QAQV-VIIDMNDPSNPIRRPI-----------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFW 111 (494)
T ss_dssp CCEE-EEEETTSTTSCEEEEC-----------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEE
T ss_pred CCeE-EEEECCCCCcceeccc-----------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEE
Confidence 3367 5889887654322221 112344677777777665 6799999999998888875 45567777
Q ss_pred EEccCCCEEEEeeCCCcEEEEecCC-CceeeEeccc----ccceeEEEEccCCCEEEEEeC-------CCcEEEEeCCCC
Q 010324 314 VFSRDGSQILSTSFDSTARIHGLKS-GKLLKEFRGH----SSYVNDAIFTNDGSRVVTASS-------DCTVKVWDLKST 381 (513)
Q Consensus 314 ~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~ 381 (513)
.|-.+ +.|+..+ +..|+-|++.. ..+++.+..| ...|..-..+++.++++..+- .|.+.+|..+.+
T Consensus 112 kWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~ 189 (494)
T 1bpo_A 112 KWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (494)
T ss_dssp EEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred EecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc
Confidence 88744 4566555 67899999964 3455666554 345666777889998775542 477899998765
Q ss_pred ceeEeecCCCCCCCCCceeeEEEecCCC--CCeEEEEcCC---CcEEEEEccCe----------EEEEeecCccCCCcEE
Q 010324 382 DCLQTFKPPPPLRGGDASVNSVHLFPKN--PDHIVVCNKT---SSIYIMTLQGQ----------VVKSFSSGKREGGDFV 446 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~~---~~i~i~d~~~~----------~~~~~~~~~~~~~~~~ 446 (513)
.. +.++ +|.....++...... ..++..+... +.+++.++... .+..+...........
T Consensus 190 ~s-Q~ie------Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv 262 (494)
T 1bpo_A 190 VS-QPIE------GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 262 (494)
T ss_dssp CE-EEEC------CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred cc-chhe------eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence 42 2222 444444444333211 1233434332 78888887421 2222333333456677
Q ss_pred EEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeE
Q 010324 447 AACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTM 508 (513)
Q Consensus 447 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i 508 (513)
++..|+.-..++.-+.-|.|++||+.++.++..-+-...+|..-+-+....=++.....|.|
T Consensus 263 amqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred EEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 89999999999999999999999999999988777666677666655544445555566654
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.50 E-value=0.0002 Score=68.01 Aligned_cols=223 Identities=10% Similarity=-0.017 Sum_probs=140.3
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEee-CCCcEEEEecCCC----ceeeEecccccce
Q 010324 278 MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKSG----KLLKEFRGHSSYV 352 (513)
Q Consensus 278 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~----~~~~~~~~~~~~v 352 (513)
+|+.+. ...|+..++........+ .....+..++|++.+..|+.+. ..+.|+.+++... .....+.......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEccCCcceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 455444 468899998866544433 3456788999998766666654 4678888988652 2223333334567
Q ss_pred eEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC-CCcEEEEEccCe
Q 010324 353 NDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK-TSSIYIMTLQGQ 430 (513)
Q Consensus 353 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~ 430 (513)
..+++.+ .++.+++-...+.|.+.++........+. ........+++.|.++.++++-.. .+.|...++++.
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 8899988 44555555567889999987654333332 122357889999977455555433 478999999876
Q ss_pred EEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeec--ccCCeEEEEEcCCCCEEEEEECCCe
Q 010324 431 VVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKV--HEKDVIGVTHHPHRNLLATYGEDCT 507 (513)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~~~dg~ 507 (513)
....+... .-.....+++++++..|+.+. ..+.|..+|+........... .-....+++.. .+.++++-...+.
T Consensus 236 ~~~~~~~~--~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~ 312 (400)
T 3p5b_L 236 DIYSLVTE--NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 312 (400)
T ss_dssp SCEEEECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS
T ss_pred ccEEEEEC--CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe
Confidence 55544332 124578999998888777775 567899999875544333332 22345567763 3445555555566
Q ss_pred EEecc
Q 010324 508 MKLWK 512 (513)
Q Consensus 508 i~iWd 512 (513)
|..++
T Consensus 313 V~~~~ 317 (400)
T 3p5b_L 313 IFSAN 317 (400)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66554
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.49 E-value=0.00018 Score=74.14 Aligned_cols=210 Identities=13% Similarity=0.050 Sum_probs=132.2
Q ss_pred CCccEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCc----ceeeecccccccCeEEEEEccCCCEEEEe-eCCCcEEEEec
Q 010324 263 HDETVLCIEFSRDSEMLASG-SQDGKIKVWRIRSG----QCLRRLERAHSEGVTSLVFSRDGSQILST-SFDSTARIHGL 336 (513)
Q Consensus 263 h~~~v~~l~~~~~~~~l~s~-~~dg~i~vwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~ 336 (513)
....+..|+|++.+..|+.+ ...+.|+.+++... .....+. ........|++.+.+..|+.+ ...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe-cCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence 34567899999855555544 45678888888642 2222222 233456789998877655554 55688999998
Q ss_pred CCCceeeEecccccceeEEEEccCCCEEEEEeC-C-CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEE
Q 010324 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-D-CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 414 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 414 (513)
........+.........|+++|.+.+|+.+.. + +.|...++........+. ..-...+.+++.+....+++
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~------~~l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT------ENIQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC------SSCSCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe------CCCCCceEEEEecCCCeEEE
Confidence 654433333334456889999997666665543 2 679988887543322222 12246788999988756666
Q ss_pred EEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeee
Q 010324 415 VCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMK 481 (513)
Q Consensus 415 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~ 481 (513)
+-.....|..++++|.....+......-.....+++. +..|+... ..+.|...|..+|+.+..+.
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 6677789999999976655554432222345566663 33555544 67889999987776555553
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.48 E-value=0.00011 Score=67.45 Aligned_cols=225 Identities=9% Similarity=-0.061 Sum_probs=135.8
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEe-eCCCcEEEEecCCCcee-eEecccccceeEE
Q 010324 278 MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDSTARIHGLKSGKLL-KEFRGHSSYVNDA 355 (513)
Q Consensus 278 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~ 355 (513)
+|+.+. ...|+..++................+..++|.+.+..|+.+ ...+.|..+++..+... ..+...-.....+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 344433 45789999876542111111223456789999865555554 45678999998765321 1222223456788
Q ss_pred EEccC-CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc-CCCcEEEEEccCeEEE
Q 010324 356 IFTND-GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN-KTSSIYIMTLQGQVVK 433 (513)
Q Consensus 356 ~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~ 433 (513)
++.+. ++.+++-...+.|.++++.......... ........+++.|.++.++++-. ..+.|...++++....
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 158 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE
Confidence 99874 4455555567889999987543222221 12345688899887645555442 3678999999876544
Q ss_pred EeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 434 SFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 434 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.+... .-.....+++++++..|+.+. ..+.|..+|..................++++. .+.++++-...+.|..++
T Consensus 159 ~~~~~--~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~ 235 (318)
T 3sov_A 159 IIINS--EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACN 235 (318)
T ss_dssp EEECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred EEEEC--CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEE
Confidence 44322 123467999999777776665 67889999987543333333334456677775 334455544556666654
No 288
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.44 E-value=0.00076 Score=60.10 Aligned_cols=250 Identities=10% Similarity=0.119 Sum_probs=160.4
Q ss_pred CeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEE
Q 010324 235 GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLV 314 (513)
Q Consensus 235 g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 314 (513)
..+ +|-|+.++....+.+.. -+ +.-.+|..+.+|.-. ..++.++|+++.+.++.+. ....|.-=.
T Consensus 49 ~~V-vIiDl~n~~~~~Rrpi~-------Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~--~~e~VvfWk 113 (365)
T 2xzh_A 49 AQV-VIIDMNDPSNPIRRPIS-------AD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWK 113 (365)
T ss_dssp EEE-EEEETTSTTSCEEEECC-------CS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEE
T ss_pred CEE-EEEECCCCCCccccccc-------cc----eeeeCCCccEEEEec-CCeEEEechHHhhhhccee--cCCccEEEE
Confidence 367 48898876543222111 12 233578877777665 6789999999999888876 456888888
Q ss_pred EccCCCEEEEeeCCCcEEEEecCC-CceeeEeccc----ccceeEEEEccCCCEEEEEeC-------CCcEEEEeCCCCc
Q 010324 315 FSRDGSQILSTSFDSTARIHGLKS-GKLLKEFRGH----SSYVNDAIFTNDGSRVVTASS-------DCTVKVWDLKSTD 382 (513)
Q Consensus 315 ~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~ 382 (513)
|-. .+.|+..+ +..|+-|++.. ..+.+.+..| ...|..-..+++.++++..+- .|.+.+|..+.+.
T Consensus 114 Wis-~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~ 191 (365)
T 2xzh_A 114 WIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 191 (365)
T ss_dssp ECS-SSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE
T ss_pred ecC-CCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc
Confidence 874 44566555 57899999964 3555556554 345666777888888776542 3778999987643
Q ss_pred eeEeecCCCCCCCCCceeeEEEecCCC--CCeEEEEcC---CCcEEEEEccCe----------EEEEeecCccCCCcEEE
Q 010324 383 CLQTFKPPPPLRGGDASVNSVHLFPKN--PDHIVVCNK---TSSIYIMTLQGQ----------VVKSFSSGKREGGDFVA 447 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~---~~~i~i~d~~~~----------~~~~~~~~~~~~~~~~~ 447 (513)
.+.++ +|......+...... ..+++.+.. .+.+++.++... .+..+...........+
T Consensus 192 -sQ~ie------Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVa 264 (365)
T 2xzh_A 192 -SQPIE------GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA 264 (365)
T ss_dssp -EEEEC------CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEE
T ss_pred -cceee------eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEE
Confidence 22232 343333333322211 123333332 258888887421 23333333444566788
Q ss_pred EEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeE
Q 010324 448 ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTM 508 (513)
Q Consensus 448 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i 508 (513)
+..|+.-..++.-+.-|.+++||+.++.++..-+-...+|..-+-+....=++.....|.|
T Consensus 265 mqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 265 MQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp EEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred EEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEE
Confidence 9999999999999999999999999999988777666676655554443344445566654
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=0.00012 Score=70.45 Aligned_cols=240 Identities=10% Similarity=0.052 Sum_probs=145.2
Q ss_pred cEEEEEEcC-CCCEEEEEeC-CCcEEEEEcCCcceeeecccc--cccCeEEEEE-------ccCCCEEEEeeCCC-----
Q 010324 266 TVLCIEFSR-DSEMLASGSQ-DGKIKVWRIRSGQCLRRLERA--HSEGVTSLVF-------SRDGSQILSTSFDS----- 329 (513)
Q Consensus 266 ~v~~l~~~~-~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~-------~~~~~~l~~~~~dg----- 329 (513)
....|+|+| ++..|+.+.. .+.|++.|+.++........+ .......++| ++++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899999 3555555544 467888998877654433211 1235899999 99999777776554
Q ss_pred --cEEEEecCC-Ccee-----eEecccccceeEEEEccC-CCEEEEEeCCCcEEEEeCC-------CCce----------
Q 010324 330 --TARIHGLKS-GKLL-----KEFRGHSSYVNDAIFTND-GSRVVTASSDCTVKVWDLK-------STDC---------- 383 (513)
Q Consensus 330 --~i~i~d~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~-------~~~~---------- 383 (513)
.|.+++... +... ..+.. ......++++|+ +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665433 2221 12221 224567889995 5555566677889999987 4543
Q ss_pred -eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe--EE---EEeecC--cc----------CCCcE
Q 010324 384 -LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ--VV---KSFSSG--KR----------EGGDF 445 (513)
Q Consensus 384 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~---~~~~~~--~~----------~~~~~ 445 (513)
...+.. .........++++|++..++++-+....|+.++.++. .+ ..+... .. .-...
T Consensus 299 ~~~~l~~----~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 299 TFKQLFT----IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TEEEEEE----CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred ccceeEe----cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 111110 0123456789999998445666677889999777632 21 222221 00 00123
Q ss_pred E-EEEEC-------CCCCEEEEEecCceEEEEECCCceeeEeeecc------------------------cCCeEEEEEc
Q 010324 446 V-AACVS-------PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH------------------------EKDVIGVTHH 493 (513)
Q Consensus 446 ~-~~~~s-------~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h------------------------~~~v~~~~~~ 493 (513)
. .++.. ++|.+.++-..+..|+.++ .+|.. .++.+. -.....|+++
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 4 45554 5666666666788999998 45643 333221 1236789999
Q ss_pred CC-CCEEEEEECCCeEEecc
Q 010324 494 PH-RNLLATYGEDCTMKLWK 512 (513)
Q Consensus 494 p~-~~~l~s~~~dg~i~iWd 512 (513)
++ +.++++=..+.+|+.++
T Consensus 453 ~~~g~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTIS 472 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEE
Confidence 96 77666666778888765
No 290
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.43 E-value=2e-06 Score=88.07 Aligned_cols=219 Identities=12% Similarity=0.033 Sum_probs=131.8
Q ss_pred ccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCC----cceeeecccccccCeEEEEEccCCCEEE-EeeCCCcEEEEecCC
Q 010324 265 ETVLCIEFSRDSEMLASGS-QDGKIKVWRIRS----GQCLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGLKS 338 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~-~dg~i~vwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~ 338 (513)
..+..++|++.+..|+.+. ..+.|+.+++.. ......+. ........+++.+.+..|+ +-...+.|.++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~-~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC-SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe-CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence 4566889998776666654 457899999875 22222221 1122345678875444444 445578899999865
Q ss_pred CceeeEecccccceeEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE
Q 010324 339 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASS--DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 416 (513)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 416 (513)
......+.........++++|.+.+|+.+.. .+.|..+++..... ..+.. ..-...+.+++.|.+..++++-
T Consensus 485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~-----~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT-----ENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESC-----SSCSSCCCEEECTTTCCEEEEE
T ss_pred CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEe-----CCCCCccEEEEeccCCEEEEEe
Confidence 5433333333345788999996555554442 26788877753322 22211 1123567899999887788888
Q ss_pred cCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEE
Q 010324 417 NKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVT 491 (513)
Q Consensus 417 ~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 491 (513)
...+.|..+++++.....+............+++..+ .++++....+.|..++..+++.+..+......++.|+
T Consensus 559 ~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 559 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence 8888999999987555544432212223345555443 3444445678999999888887777654333344443
No 291
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.41 E-value=2.3e-05 Score=80.10 Aligned_cols=239 Identities=10% Similarity=0.014 Sum_probs=134.4
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEEcCCcceee--ecccccccCeEEEEEccCCCEEEEeeC-CCcEEE
Q 010324 269 CIEFSR-DSEMLASGSQDG-----------KIKVWRIRSGQCLR--RLERAHSEGVTSLVFSRDGSQILSTSF-DSTARI 333 (513)
Q Consensus 269 ~l~~~~-~~~~l~s~~~dg-----------~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 333 (513)
+.++.| +++.++.|+.++ .+.+||..+++... .+...+.....++++.+++..+++|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 888888887543 58899988776322 222123334456778889999999984 458999
Q ss_pred EecCCCceeeEecccccc-eeEEEEccCCCEEEEEe-CC-----CcEEEEeCCCCceeEeec---CCCCCCCCCceeeEE
Q 010324 334 HGLKSGKLLKEFRGHSSY-VNDAIFTNDGSRVVTAS-SD-----CTVKVWDLKSTDCLQTFK---PPPPLRGGDASVNSV 403 (513)
Q Consensus 334 ~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~~---~~~~~~~~~~~v~~~ 403 (513)
||..+.+....-..+..+ -.+++..++|+.++.|+ .+ ..+.+||..+.+-...-. .+.....+. .
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-----~ 344 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-----G 344 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-----G
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-----c
Confidence 999876543322212222 23455667899999988 34 569999998765322100 000000000 0
Q ss_pred EecCCCCCeEEEEcCC---------CcEEEEEccCeEEEE-eecCcc------CCCcEEEEEEC-CCCCEEEEEecCc--
Q 010324 404 HLFPKNPDHIVVCNKT---------SSIYIMTLQGQVVKS-FSSGKR------EGGDFVAACVS-PKGEWIYCVGEDR-- 464 (513)
Q Consensus 404 ~~~~~~~~~l~~~~~~---------~~i~i~d~~~~~~~~-~~~~~~------~~~~~~~~~~s-~~~~~l~~g~~dg-- 464 (513)
.+..++ ..++.++.+ ..+..||........ ...... ....-.++.+. .+++.+++|+.++
T Consensus 345 ~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 345 LYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred eeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 111222 444445444 356777776332111 111100 01112334443 4778888887543
Q ss_pred ---------eEEEEECCCceeeEee--ecccCCe-EEEEEcCCCCEEEEEECC-----------CeEEeccC
Q 010324 465 ---------NLYCFSHQSGKLEHLM--KVHEKDV-IGVTHHPHRNLLATYGED-----------CTMKLWKP 513 (513)
Q Consensus 465 ---------~i~iwd~~~~~~~~~~--~~h~~~v-~~~~~~p~~~~l~s~~~d-----------g~i~iWdp 513 (513)
.|.+||..+..-.... ..+.... .+++..|++.+++.||.+ ..+.+|||
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp 495 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVP 495 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEG
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcC
Confidence 6888888776544332 2222222 345667899999999865 45778875
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.28 E-value=8.6e-05 Score=66.87 Aligned_cols=166 Identities=10% Similarity=0.129 Sum_probs=113.1
Q ss_pred cCeEEEEEccCCCEEEEee-CCCcEEEEecCCCceeeE-eccc------ccceeEEEE---ccCCCEEEEEe--------
Q 010324 308 EGVTSLVFSRDGSQILSTS-FDSTARIHGLKSGKLLKE-FRGH------SSYVNDAIF---TNDGSRVVTAS-------- 368 (513)
Q Consensus 308 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-~~~~------~~~v~~~~~---~~~~~~l~~~~-------- 368 (513)
....+++|.+....|..++ ..++|..||...+..... +..- ...+..+.| .|++.++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 3445789988666666666 789999999875543322 2220 124679999 68877766544
Q ss_pred -----CCCcEEEEeCC---CCceeEeecCCCCCCC-------CCceeeEEEecCCCCCeEEEEcCC-CcEEEEEccCeEE
Q 010324 369 -----SDCTVKVWDLK---STDCLQTFKPPPPLRG-------GDASVNSVHLFPKNPDHIVVCNKT-SSIYIMTLQGQVV 432 (513)
Q Consensus 369 -----~dg~i~iwd~~---~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~~-~~i~i~d~~~~~~ 432 (513)
.+..+..||+. +++.+..........+ .....+.++..+++ +..++++.. +.|...+.++...
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSCCE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCEE
Confidence 26779999999 7776654432110000 12358899999987 777778777 8899888887755
Q ss_pred EEeecCc---cCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc
Q 010324 433 KSFSSGK---REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 433 ~~~~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 474 (513)
..+.... ......+.++++|+|+.|++....|.+..+|+.+.
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 4443221 11233568999999999998888999999998853
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=0.00066 Score=65.41 Aligned_cols=253 Identities=11% Similarity=0.092 Sum_probs=139.6
Q ss_pred ceeEEEECC-CCCEEEEEec-CCeEEEEEeccccccccccccccccccccCCccEEEEEE-------cCCCCEEEEEeCC
Q 010324 215 HAECARFSP-DGQFLVSCSF-DGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF-------SRDSEMLASGSQD 285 (513)
Q Consensus 215 ~v~~~~~s~-~g~~la~g~~-dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-------~~~~~~l~s~~~d 285 (513)
....|+|+| ++..|.++.. .+.|+ +.|..++.+....... .........++| +++|+.|+++...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~-~ID~~~~~v~~l~~~~-----~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQ-LIDLKNRMLSSPLNIN-----TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEE-EEETTTTEEEEEECCT-----TSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEE-EEECCCCEEEEEEccC-----ccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 356899998 3554555443 45675 7787776654332210 012346899999 9999977777655
Q ss_pred C-------cEEEEEcCC-ccee-----eecccccccCeEEEEEccCCCE-EEEeeCCCcEEEEecC-------CCce---
Q 010324 286 G-------KIKVWRIRS-GQCL-----RRLERAHSEGVTSLVFSRDGSQ-ILSTSFDSTARIHGLK-------SGKL--- 341 (513)
Q Consensus 286 g-------~i~vwd~~~-~~~~-----~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~-------~~~~--- 341 (513)
+ .|.+.+... +... ..+. .......++.+|++.. +++-..++.|..+|+. ++..
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CCCcccCceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 4 255665333 2221 1221 1234457888995444 5555567889999987 4543
Q ss_pred --------eeE-ec-ccccceeEEEEccCCCEEEEE-eCCCcEEEEeCC--CCce--eEeecCCCCCCCC---------C
Q 010324 342 --------LKE-FR-GHSSYVNDAIFTNDGSRVVTA-SSDCTVKVWDLK--STDC--LQTFKPPPPLRGG---------D 397 (513)
Q Consensus 342 --------~~~-~~-~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~--~~~~--~~~~~~~~~~~~~---------~ 397 (513)
... +. ........++|+|+|++|..+ +..+.|+.++.. ++.. ..++.......+. -
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 111 11 123446789999999964444 567788886543 3221 0111100000000 0
Q ss_pred ceee-EEEecC------CCCCeEEEEcCCCcEEEEEccCeEEEEeecCc-------------cC--------CCcEEEEE
Q 010324 398 ASVN-SVHLFP------KNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGK-------------RE--------GGDFVAAC 449 (513)
Q Consensus 398 ~~v~-~~~~~~------~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-------------~~--------~~~~~~~~ 449 (513)
.... .+.... ....++++-..+..|+.++..+. +..+.... .. -.....++
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 1223 334431 23356666667788888886664 33333210 00 12456788
Q ss_pred ECCC-CCEEEEEecCceEEEEECCCcee
Q 010324 450 VSPK-GEWIYCVGEDRNLYCFSHQSGKL 476 (513)
Q Consensus 450 ~s~~-~~~l~~g~~dg~i~iwd~~~~~~ 476 (513)
++++ |.+.++=..+..|+.+++.....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 8886 55555555677888888765443
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.23 E-value=0.00051 Score=62.45 Aligned_cols=187 Identities=19% Similarity=0.328 Sum_probs=120.8
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccC----CC---EEEEEeC---CCcEEEEeC--CCCceeE
Q 010324 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND----GS---RVVTASS---DCTVKVWDL--KSTDCLQ 385 (513)
Q Consensus 318 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~iwd~--~~~~~~~ 385 (513)
....++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ .+++... +++|.+|++ .++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 4456777777889999999 8999888764 55777776663 22 2333333 578999976 3433 44
Q ss_pred eecCCC-CCCCCCceeeEEEe--cCCCCC-eEEEEcCCCcEEEEEcc--------CeEEEEeecCccCCCcEEEEEECCC
Q 010324 386 TFKPPP-PLRGGDASVNSVHL--FPKNPD-HIVVCNKTSSIYIMTLQ--------GQVVKSFSSGKREGGDFVAACVSPK 453 (513)
Q Consensus 386 ~~~~~~-~~~~~~~~v~~~~~--~~~~~~-~l~~~~~~~~i~i~d~~--------~~~~~~~~~~~~~~~~~~~~~~s~~ 453 (513)
.+.... +.......+..+++ +|.... ++++...+|.+..|++. .+.++.+.. .+.+-.+...+.
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l----gsq~EgcvvDd~ 190 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM----NSQTEGMAADDE 190 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC----SSCEEEEEEETT
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC----CCCcceEEEcCC
Confidence 442210 00011145666777 665433 68888899999999883 234455444 345778889999
Q ss_pred CCEEEEEecCceEEEEECC-----CceeeEeee-cc-cCCeEEEEEc--CCCC-EEEEEE-CCCeEEecc
Q 010324 454 GEWIYCVGEDRNLYCFSHQ-----SGKLEHLMK-VH-EKDVIGVTHH--PHRN-LLATYG-EDCTMKLWK 512 (513)
Q Consensus 454 ~~~l~~g~~dg~i~iwd~~-----~~~~~~~~~-~h-~~~v~~~~~~--p~~~-~l~s~~-~dg~i~iWd 512 (513)
...|+.+-++..|..++.. +++.+..+. ++ ...+..|++- +++. +|++++ .+++..+||
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 9999999999888888865 345554442 22 2368888884 4544 555555 667888886
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.19 E-value=0.0054 Score=61.76 Aligned_cols=233 Identities=6% Similarity=-0.067 Sum_probs=143.0
Q ss_pred EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCcceeeecccc
Q 010324 227 FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG-SQDGKIKVWRIRSGQCLRRLERA 305 (513)
Q Consensus 227 ~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~ 305 (513)
+|+.+ ..+.|+ ..++.+......+.. ..-..+..++|++.+..|+.+ ..++.|..+++........+. .
T Consensus 8 ~Ll~s-~~~~I~-~i~l~~~~~~~~~~~-------~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~-~ 77 (628)
T 4a0p_A 8 FLLFS-RRADIR-RISLETNNNNVAIPL-------TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE-F 77 (628)
T ss_dssp EEEEE-ETTEEE-EEESSCTTCEEECCC-------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-S
T ss_pred EEEEE-eCCcEE-EEECCCCCcceEEEc-------CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe-C
Confidence 44444 345675 777765432211111 123468899999966666555 457889999886544333332 2
Q ss_pred cccCeEEEEEccCCCEEEEe-eCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC--CCcEEEEeCCCCc
Q 010324 306 HSEGVTSLVFSRDGSQILST-SFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS--DCTVKVWDLKSTD 382 (513)
Q Consensus 306 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~ 382 (513)
.......+++.+.+..|+.+ ...+.|.+.++............-.....++++|....|..+.. .+.|...++....
T Consensus 78 g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 78 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 22456788998766655544 45678999998644332222233445789999986555555542 5678888876544
Q ss_pred eeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEec
Q 010324 383 CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGE 462 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 462 (513)
...... .-...+.+++.+.+..++++-...+.|..+++++.....+... ......+++.. +...++-..
T Consensus 158 ~~~l~~-------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~---l~~P~glav~~-~~ly~tD~~ 226 (628)
T 4a0p_A 158 RTTLVP-------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD---LPHPFGLTQYQ-DYIYWTDWS 226 (628)
T ss_dssp CEEEEC-------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---CSCEEEEEEET-TEEEEEETT
T ss_pred eEEEEC-------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeecc---CCCceEEEEEC-CEEEEecCC
Confidence 322221 2346788999998767777777888999999986544333322 23355777754 333344446
Q ss_pred CceEEEEECCCceeeEee
Q 010324 463 DRNLYCFSHQSGKLEHLM 480 (513)
Q Consensus 463 dg~i~iwd~~~~~~~~~~ 480 (513)
.+.|...|..+++....+
T Consensus 227 ~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 227 RRSIERANKTSGQNRTII 244 (628)
T ss_dssp TTEEEEEETTTCCSCEEE
T ss_pred CCEEEEEECCCCCceEEE
Confidence 889999998777644443
No 296
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.18 E-value=0.0024 Score=64.31 Aligned_cols=223 Identities=10% Similarity=-0.006 Sum_probs=141.0
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEe-eCCCcEEEEecCCCceeeEecccccceeEEE
Q 010324 278 MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDSTARIHGLKSGKLLKEFRGHSSYVNDAI 356 (513)
Q Consensus 278 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 356 (513)
+|+.+ ....|+..++.+......+....-..+..++|++.+..|+.+ ..++.|..+++........+.........++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 456899999987654333322233568899999976666655 4568899998865443333333334577899
Q ss_pred EccCCCEE-EEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc-CCCcEEEEEccCeEEEE
Q 010324 357 FTNDGSRV-VTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN-KTSSIYIMTLQGQVVKS 434 (513)
Q Consensus 357 ~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~~ 434 (513)
+.+.+..| ++-...+.|.+.++........+. ..-.....+++.|..+.++++-. ..+.|...+++|.....
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~------~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW------KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEEC------SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe------CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE
Confidence 98765544 555557889999987543222221 12235689999987645555542 36788888888765555
Q ss_pred eecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 435 FSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
+.. .......++++++++.|+.+. ..+.|..+|+..... ..+........++++.. +.++++-...+.|...|
T Consensus 161 l~~---~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVP---NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEC---CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 443 234578999999877777766 567899999875444 33433344556777754 34444444456665543
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.18 E-value=0.0016 Score=60.02 Aligned_cols=239 Identities=12% Similarity=0.057 Sum_probs=127.3
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 292 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd 292 (513)
...+.++.|++ +..++ ++.+|.+ +...+.|+.-..... ...+...+..+.+.+++..++++ .+|.|.. .
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i--~~S~DgG~tW~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S 147 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIM--LHTTDGGQSWSQIPL-----DPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-T 147 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEE--EEESSTTSSCEECCC-----CTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-E
T ss_pred CccEEEEEecC-CeEEE-EECCCeE--EEECCCCCCceECcc-----ccCCCCCeEEEEEECCCCEEEEe-CCccEEE-E
Confidence 34678889986 44444 4556754 333333433222111 01133457788887777666655 4554422 1
Q ss_pred cCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEE-EecCCCceeeEe-cccccceeEEEEccCCCEEEEEeCC
Q 010324 293 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARI-HGLKSGKLLKEF-RGHSSYVNDAIFTNDGSRVVTASSD 370 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d 370 (513)
...|+.-..........+..+++.|++.+++++. +|.+.. .|- .++.-..+ ......+..+.+.+++..+ .++.+
T Consensus 148 ~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~ 224 (327)
T 2xbg_A 148 KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNG 224 (327)
T ss_dssp SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEE-EEETT
T ss_pred cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCEE-EEeCC
Confidence 2334444333334556789999999888776665 454443 332 12221111 2344568889999988655 55667
Q ss_pred CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc-CeEEEEeecCccCCCcEEEEE
Q 010324 371 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAAC 449 (513)
Q Consensus 371 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~ 449 (513)
|.+++.+...++.-..+..+. ......+.++.+.+++ ..++ ++.++.++ +..+ +..-............+..+.
T Consensus 225 G~~~~s~~D~G~tW~~~~~~~--~~~~~~~~~v~~~~~~-~~~~-~g~~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~ 299 (327)
T 2xbg_A 225 GKIAFSDPDNSENWGELLSPL--RRNSVGFLDLAYRTPN-EVWL-AGGAGALL-CSQDGGQTWQQDVDVKKVPSNFYKIL 299 (327)
T ss_dssp TEEEEEETTEEEEECCCBCTT--SSCCSCEEEEEESSSS-CEEE-EESTTCEE-EESSTTSSCEECGGGTTSSSCCCEEE
T ss_pred ceEEEecCCCCCeeEeccCCc--ccCCcceEEEEecCCC-EEEE-EeCCCeEE-EeCCCCcccEEcCccCCCCCCeEEEE
Confidence 887776433233222221110 0122357788887753 4444 44567663 4444 444443332211223466777
Q ss_pred ECCCCCEEEEEecCceEEEEEC
Q 010324 450 VSPKGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 450 ~s~~~~~l~~g~~dg~i~iwd~ 471 (513)
+.+++ .+++++.+|.|.-++-
T Consensus 300 ~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 300 FFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEETT-EEEEECSTTEEEEECC
T ss_pred EECCC-ceEEEcCCceEEEEcC
Confidence 76544 4667777898877653
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.17 E-value=0.0012 Score=59.43 Aligned_cols=205 Identities=10% Similarity=0.071 Sum_probs=125.4
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCcceeeecccc----c--ccCeEEEEE---ccCCCEEEEee---------
Q 010324 266 TVLCIEFSRDSEMLASGS-QDGKIKVWRIRSGQCLRRLERA----H--SEGVTSLVF---SRDGSQILSTS--------- 326 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~----~--~~~v~~~~~---~~~~~~l~~~~--------- 326 (513)
-.-+++|++....+..++ ..++|..||...+......... . ...+..+.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 344788988666666666 6899999998766433332111 1 124689999 58877776543
Q ss_pred ----CCCcEEEEecC---CCceeeEec--c-----------cccceeEEEEccCCCEEEEEeCC-CcEEEEeCCCCceeE
Q 010324 327 ----FDSTARIHGLK---SGKLLKEFR--G-----------HSSYVNDAIFTNDGSRVVTASSD-CTVKVWDLKSTDCLQ 385 (513)
Q Consensus 327 ----~dg~i~i~d~~---~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~ 385 (513)
.+..|..||+. +++.+.... . ......+++..++|+..++++.. +.|...+.... ...
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVS 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEe
Confidence 25779999998 787765443 1 11248899999999999999888 88888887643 233
Q ss_pred eecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEE--EEee--cCccCCCcEEE-EEECCCCCEEEEE
Q 010324 386 TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV--KSFS--SGKREGGDFVA-ACVSPKGEWIYCV 460 (513)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~--~~~~~~~~~~~-~~~s~~~~~l~~g 460 (513)
.+....+........+.+++.|++ ..+++....+.+..+|+..... .... ........... +..-.+|+.++++
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~ 251 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVG 251 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEE
T ss_pred eeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEE
Confidence 222111111223457789999988 6666665599999999873211 1111 10001112233 3444577774444
Q ss_pred -ecCceEEEEECC
Q 010324 461 -GEDRNLYCFSHQ 472 (513)
Q Consensus 461 -~~dg~i~iwd~~ 472 (513)
...+.+.+.+..
T Consensus 252 ~~~~~~~~l~S~D 264 (334)
T 2p9w_A 252 ARAPYAISFRSWD 264 (334)
T ss_dssp EETTEEEEEECSS
T ss_pred cCCCCEEEEECCC
Confidence 455655555543
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.17 E-value=0.0015 Score=59.38 Aligned_cols=193 Identities=12% Similarity=0.269 Sum_probs=124.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccC----CC---EEEEeeC---CCcEEEEecC--CCcee
Q 010324 275 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD----GS---QILSTSF---DSTARIHGLK--SGKLL 342 (513)
Q Consensus 275 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~i~d~~--~~~~~ 342 (513)
...+++.....+-+.+||+ +|+.++.+. ...++.+..-|+ |+ .+++... +++|.+|++. ++. +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 3445666677889999999 888888875 245666666652 22 2233333 5789999763 333 4
Q ss_pred eEecc------cc-cceeEEEE--ccC-CC-EEEEEeCCCcEEEEeCC-------CCceeEeecCCCCCCCCCceeeEEE
Q 010324 343 KEFRG------HS-SYVNDAIF--TND-GS-RVVTASSDCTVKVWDLK-------STDCLQTFKPPPPLRGGDASVNSVH 404 (513)
Q Consensus 343 ~~~~~------~~-~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (513)
..+.. .. ..+..+++ +|. +. ++++...+|.+..|++. +.+.++++... +.+..+.
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-------sq~Egcv 186 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-------SQTEGMA 186 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-------SCEEEEE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-------CCcceEE
Confidence 44421 11 45677787 674 43 68888889999999883 33456666532 3567777
Q ss_pred ecCCCCCeEEEEcCCCcEEEEEcc------CeEEEEeecCccCCCcEEEEEE--CCCCC-EEEEEe-cCceEEEEECC-C
Q 010324 405 LFPKNPDHIVVCNKTSSIYIMTLQ------GQVVKSFSSGKREGGDFVAACV--SPKGE-WIYCVG-EDRNLYCFSHQ-S 473 (513)
Q Consensus 405 ~~~~~~~~l~~~~~~~~i~i~d~~------~~~~~~~~~~~~~~~~~~~~~~--s~~~~-~l~~g~-~dg~i~iwd~~-~ 473 (513)
..+.. ..++++..+.-|..++.+ ...+..+.. ..-...+..+++ .++++ +|++++ .++...+||.. +
T Consensus 187 vDd~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~ 264 (355)
T 3amr_A 187 ADDEY-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK 264 (355)
T ss_dssp EETTT-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EcCCC-CeEEEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence 77766 788888888777777755 223333322 212234667776 56666 677666 67799999996 6
Q ss_pred ceeeEeee
Q 010324 474 GKLEHLMK 481 (513)
Q Consensus 474 ~~~~~~~~ 481 (513)
.+.+..+.
T Consensus 265 ~~~vg~f~ 272 (355)
T 3amr_A 265 NKYVADFR 272 (355)
T ss_dssp CCEEEEEE
T ss_pred CcEEEEEE
Confidence 66776664
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.16 E-value=0.0026 Score=65.67 Aligned_cols=221 Identities=11% Similarity=-0.019 Sum_probs=134.5
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEe-eCCCcEEEEecCCC----ceeeEecccccce
Q 010324 278 MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDSTARIHGLKSG----KLLKEFRGHSSYV 352 (513)
Q Consensus 278 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~----~~~~~~~~~~~~v 352 (513)
+|+.+ ....|+..++......... .....+..++|.+....|+.+ ...+.|+.+++... .....+.......
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccc-cccceeEeeccCCcceeee--cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 44443 3456888888765544333 245567899999865555544 45678888888642 2223333344567
Q ss_pred eEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC-CcEEEEEccCe
Q 010324 353 NDAIFTNDGSR-VVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-SSIYIMTLQGQ 430 (513)
Q Consensus 353 ~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-~~i~i~d~~~~ 430 (513)
..|++.+.+.. +++-...+.|.+.++........+. ........|++.|..+.++++-... +.|...+++|.
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 547 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence 78999987654 4455567889999987544332222 1223578999999874555555444 78999999987
Q ss_pred EEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeecc--cCCeEEEEEcCCCCEEEEEECCCe
Q 010324 431 VVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVH--EKDVIGVTHHPHRNLLATYGEDCT 507 (513)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~~~dg~ 507 (513)
....+.... -.....+++++.+..|+.+. ..+.|..+++........+... -....+|++.. +.++++-...+.
T Consensus 548 ~~~~lv~~~--l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~ 624 (791)
T 3m0c_C 548 DIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEA 624 (791)
T ss_dssp CEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTE
T ss_pred ceEEEEeCC--CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCE
Confidence 666555422 24578999998777777765 5678999998655444443322 22345666532 233333334455
Q ss_pred EEe
Q 010324 508 MKL 510 (513)
Q Consensus 508 i~i 510 (513)
|..
T Consensus 625 I~~ 627 (791)
T 3m0c_C 625 IFS 627 (791)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.16 E-value=0.0012 Score=61.39 Aligned_cols=235 Identities=13% Similarity=0.165 Sum_probs=119.5
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC---CCEEEEEeC-C----
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD---SEMLASGSQ-D---- 285 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~-d---- 285 (513)
...+.++|.|+|+++++ ..+|.|. +++ ++......... .+.........|+|+|+ +..|..+.. .
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~-~i~--~g~~~~~~~~~---v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIR-LFR--EGRLSTYAELS---VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEE-EEE--TTEEEEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEE-EEE--CCCccEeecce---EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 35678999999995555 5568885 777 33321111000 11223457899999998 555555443 2
Q ss_pred -CcEEEEEcCCcc-----eeee-cc--cccccCeEEEEEccCCCEEEEeeC-------------CCcEEEEecCCC----
Q 010324 286 -GKIKVWRIRSGQ-----CLRR-LE--RAHSEGVTSLVFSRDGSQILSTSF-------------DSTARIHGLKSG---- 339 (513)
Q Consensus 286 -g~i~vwd~~~~~-----~~~~-~~--~~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~---- 339 (513)
+.|..++...+. .+.. +. .........++|.|||...++.+. .|.|.-++....
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 578888876432 1111 21 011123468999999976665432 245666665420
Q ss_pred --------ceeeEe-cccccceeEEEEcc-CCCEEEEEeCCCcE------EEEeCCCCceeE-----------eecCCCC
Q 010324 340 --------KLLKEF-RGHSSYVNDAIFTN-DGSRVVTASSDCTV------KVWDLKSTDCLQ-----------TFKPPPP 392 (513)
Q Consensus 340 --------~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i------~iwd~~~~~~~~-----------~~~~~~~ 392 (513)
.....+ .++. ....++|+| ++..+++-...+.+ .+.-+..+.... .+..+..
T Consensus 184 npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 000111 1222 367789999 66655544333321 122222222000 0000000
Q ss_pred CCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeE-------EEEeecCccCCCcEEEEEECCCCCEEEEEe
Q 010324 393 LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV-------VKSFSSGKREGGDFVAACVSPKGEWIYCVG 461 (513)
Q Consensus 393 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 461 (513)
..........+++. .+ .++++....+.|...++.+.. ...+.. ....+..+++.|||.+.++..
T Consensus 263 ~~~~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~---~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWPQGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALS---GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECTTCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE---SSCCEEEEEECTTSCEEEEEC
T ss_pred ecCCCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceeecchheecc---cCCCeeEEEECCCCcEEEEEe
Confidence 00112234556663 22 566666666778887776321 122221 234678899999997666654
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.15 E-value=0.0048 Score=62.02 Aligned_cols=287 Identities=12% Similarity=0.023 Sum_probs=151.9
Q ss_pred CceeEEEECCCCCEE-EEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC--CCcEEE
Q 010324 214 SHAECARFSPDGQFL-VSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ--DGKIKV 290 (513)
Q Consensus 214 ~~v~~~~~s~~g~~l-a~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--dg~i~v 290 (513)
.....+++.+.+..| ++-...+.|. +.+.+..... .+. ...-.....|++.|.+..|+.+.. .+.|..
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~-v~~~dG~~~~-~l~-------~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r 154 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIE-VSNLDGSLRK-VLF-------WQELDQPRAIALDPSSGFMYWTDWGEVPKIER 154 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEE-EEETTSCSCE-EEE-------CSSCSCCCCEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEE-EEECCCCCEE-EEE-------eCCCCCCceEEEecCCCeEEEeccCCCCEEEE
Confidence 467889999955544 4555678885 8887653321 111 012345678999997666666553 356666
Q ss_pred EEcCCcceeeecccccccCeEEEEEccCCCEEEEee-CCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC
Q 010324 291 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS 369 (513)
Q Consensus 291 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 369 (513)
.++. |.....+....-.....+++.+++..|+.+. ..+.|...|+..........+......++++..+ ..+++-..
T Consensus 155 ~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~ 232 (619)
T 3s94_A 155 AGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWS 232 (619)
T ss_dssp EETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTT
T ss_pred EECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCC
Confidence 6655 3333333222345678999999777776664 4578999998543332222222233456777655 44444446
Q ss_pred CCcEEEEeCCCCceeEeecCCC-------------------CCCCCCceeeEEEe-----------cCCC----------
Q 010324 370 DCTVKVWDLKSTDCLQTFKPPP-------------------PLRGGDASVNSVHL-----------FPKN---------- 409 (513)
Q Consensus 370 dg~i~iwd~~~~~~~~~~~~~~-------------------~~~~~~~~v~~~~~-----------~~~~---------- 409 (513)
.+.|...|..+++....+.... ......+....+++ .|.+
T Consensus 233 ~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C 312 (619)
T 3s94_A 233 THSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 312 (619)
T ss_dssp TCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCB
T ss_pred CCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCccc
Confidence 7789999987776443322110 00000001111111 1111
Q ss_pred ---CCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeecccC
Q 010324 410 ---PDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHEK 485 (513)
Q Consensus 410 ---~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~ 485 (513)
+..++..+..+.|+..++..............-..+..+++.+.+..|+.+. ..+.|+.++.........+...-.
T Consensus 313 ~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~ 392 (619)
T 3s94_A 313 KDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA 392 (619)
T ss_dssp CSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred CCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCC
Confidence 1112222233455555554221111111111123467899988666666555 678899999876544434433335
Q ss_pred CeEEEEEcCC-CCEEEEEECCCeEEec
Q 010324 486 DVIGVTHHPH-RNLLATYGEDCTMKLW 511 (513)
Q Consensus 486 ~v~~~~~~p~-~~~l~s~~~dg~i~iW 511 (513)
.+..+++.+. +++.++-+..+.|.+-
T Consensus 393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~ 419 (619)
T 3s94_A 393 HPDGIAVDWVARNLYWTDTGTDRIEVT 419 (619)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CcCceEEecccCcEEEEeCCCCcEEEE
Confidence 6778888874 4444444455666554
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.13 E-value=0.0036 Score=58.20 Aligned_cols=229 Identities=14% Similarity=0.115 Sum_probs=121.3
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcce--eeecc--cccccCeEEEEEccC---CCEEEEeeC-C-----CcE
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC--LRRLE--RAHSEGVTSLVFSRD---GSQILSTSF-D-----STA 331 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~--~~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~i 331 (513)
.....|+|.|+|+++ ++..+|.|.+++ +++. +..+. .........++|+|+ +..|+++.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGML-IAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEE-EEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEE-EEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 346799999999854 456679999998 4432 11111 122456899999998 556655443 2 678
Q ss_pred EEEecCCCc-----ee-eEec---ccccceeEEEEccCCCEEEEEeCC-------------CcEEEEeCCCCceeEeecC
Q 010324 332 RIHGLKSGK-----LL-KEFR---GHSSYVNDAIFTNDGSRVVTASSD-------------CTVKVWDLKSTDCLQTFKP 389 (513)
Q Consensus 332 ~i~d~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~~~ 389 (513)
..++...+. .+ ..+. ........++|.|+|..+++.+.. |.|.-++... . +..
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~----~p~ 182 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-E----PAP 182 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-S----BCT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-C----CCC
Confidence 888876432 11 1232 112234689999999766664321 4566666542 1 000
Q ss_pred CCCCC-----------CCCceeeEEEecCCCCCeEEEEcCCCc--------EEEEEccCeE--------------EEEee
Q 010324 390 PPPLR-----------GGDASVNSVHLFPKNPDHIVVCNKTSS--------IYIMTLQGQV--------------VKSFS 436 (513)
Q Consensus 390 ~~~~~-----------~~~~~v~~~~~~~~~~~~l~~~~~~~~--------i~i~d~~~~~--------------~~~~~ 436 (513)
..+.. ..-.....+++.|....++++-..... |......+.- .....
T Consensus 183 ~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 183 GNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp TCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 00000 001235667888854355554433333 2222111100 00000
Q ss_pred cCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCcee------eEeeecccCCeEEEEEcCCCCEEEEEE
Q 010324 437 SGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKL------EHLMKVHEKDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 437 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~~~~~p~~~~l~s~~ 503 (513)
.. ........+++ .+|..+++....+.|...++..... ...+......+..+++.|||.++++..
T Consensus 263 ~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred ec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 00 01123456666 4566555555677788877754321 122212236789999999998777664
No 304
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.09 E-value=0.0023 Score=64.38 Aligned_cols=206 Identities=10% Similarity=-0.002 Sum_probs=126.0
Q ss_pred CccEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEe-eCCCcEEEEecCCCce
Q 010324 264 DETVLCIEFSRDSEMLASGSQ-DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDSTARIHGLKSGKL 341 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~ 341 (513)
-..+..++|++.+..|+.+.. .+.|..+++........+....-.....+++.+.+..|+.+ ...+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 455789999997666666554 67888888865432222221223568899999866655554 4568999999864433
Q ss_pred eeEecccccceeEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC
Q 010324 342 LKEFRGHSSYVNDAIFTNDGSRVVTASS--DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT 419 (513)
Q Consensus 342 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 419 (513)
.......-.....+++.|.+.+|+.+.. .+.|...++..... ..+.. ..-...+.+++.+.+..++++-...
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~~-----~~~~~P~Glald~~~~~LY~aD~~~ 192 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIIN-----SEIYWPNGLTLDYEEQKLYWADAKL 192 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC-----SSCSSEEEEEEETTTTEEEEEETTT
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-EEEEe-----CCCCCCcEEEEEccCCEEEEEeCCC
Confidence 2223234456789999997666655553 46777777664332 22211 1224578899998876777777778
Q ss_pred CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEe
Q 010324 420 SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHL 479 (513)
Q Consensus 420 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~ 479 (513)
+.|..+++++.....+.... ......+++..+ .|+... ..+.|...|..+++....
T Consensus 193 ~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 193 NFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp CCEEEESSSCCEEC-----------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred CeEEEecCCCCccEEEEeCC--CCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEE
Confidence 89999999876555443311 122346667655 555544 677899999887764443
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.07 E-value=2.7e-05 Score=79.66 Aligned_cols=217 Identities=10% Similarity=-0.022 Sum_probs=127.6
Q ss_pred CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEee-CCCcEEEEecCC----CceeeEecccccceeEEEEcc
Q 010324 285 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKS----GKLLKEFRGHSSYVNDAIFTN 359 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~ 359 (513)
.+.|+..++.+......+. ....+..++|.+.+..|+.+. ..+.|+.+++.. ......+.........+++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 4578888887766544433 234567899998777777664 457899999865 222222222223456788885
Q ss_pred C-CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC-CcEEEEEccCeEEEEeec
Q 010324 360 D-GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-SSIYIMTLQGQVVKSFSS 437 (513)
Q Consensus 360 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-~~i~i~d~~~~~~~~~~~ 437 (513)
. ++.+++-...+.|.++++........+. ........+++.|.++.++++-... +.|..+++.+.....+..
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~ 536 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFR------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 536 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECC------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEe------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence 4 4445554567889999987544332222 1123457788888775555554443 788888888654444332
Q ss_pred CccCCCcEEEEEECCCCCEEEEEe-cCceEEEEECCCceeeEeeec--ccCCeEEEEEcCCCCEEEEEECCCeEEecc
Q 010324 438 GKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKV--HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
. .......++++|++..|+.+. ..+.|..+++........+.. ......++++..+ .++++....+.|..++
T Consensus 537 ~--~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 537 E--NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN 611 (699)
T ss_dssp S--SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred C--CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence 1 123456799998866665554 677899999865433333221 1223445555443 4445555566777665
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.98 E-value=0.0012 Score=60.09 Aligned_cols=224 Identities=9% Similarity=0.041 Sum_probs=114.5
Q ss_pred CCCEEEEEe-CC-----CcEEEEEcCCcceeeeccccc-ccCeEEEEEccCCCEEEEeeCC-----CcEEEEecCCCc--
Q 010324 275 DSEMLASGS-QD-----GKIKVWRIRSGQCLRRLERAH-SEGVTSLVFSRDGSQILSTSFD-----STARIHGLKSGK-- 340 (513)
Q Consensus 275 ~~~~l~s~~-~d-----g~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-- 340 (513)
++..++.|+ .+ ..+.+||..+++-...-.... ......+. .++..++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666666 32 368899987765322111011 11122222 256777777765 468999988766
Q ss_pred -eeeE--ecccccceeEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCe
Q 010324 341 -LLKE--FRGHSSYVNDAIFTNDGSRVVTASSD-----CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH 412 (513)
Q Consensus 341 -~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (513)
-... +.........+. .+++.++.|+.+ ..+.+||+.+.+-...-..+..... .++... ++.+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-----~~~~~~--~~~i 162 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-----AGLVVA--SGVI 162 (301)
T ss_dssp CCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-----CEEEEE--TTEE
T ss_pred eeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-----ceEEEE--CCEE
Confidence 3222 211111122222 256667776643 3588999887653332221211111 112222 2356
Q ss_pred EEEEcCC-----CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC-----ceEEEEECCCceeeEe--e
Q 010324 413 IVVCNKT-----SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-----RNLYCFSHQSGKLEHL--M 480 (513)
Q Consensus 413 l~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~--~ 480 (513)
++.|+.+ ..+..||.....................+. .+++.++.|+.+ ..+.+||..+.+-... +
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 240 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM 240 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC
Confidence 6666544 468899988665555543322222222222 256777777754 4689999987754322 2
Q ss_pred ecccCCeEEEEEcCCCCEEEEEECCC-----eEEeccC
Q 010324 481 KVHEKDVIGVTHHPHRNLLATYGEDC-----TMKLWKP 513 (513)
Q Consensus 481 ~~h~~~v~~~~~~p~~~~l~s~~~dg-----~i~iWdp 513 (513)
.........+.+ ++.+++.||.++ .|.+|||
T Consensus 241 p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 241 TTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp SSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred CCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence 211112223333 667777777653 4566664
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.95 E-value=0.012 Score=54.60 Aligned_cols=236 Identities=13% Similarity=0.089 Sum_probs=125.1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcc-eeeecc--cccccCeEEEEEccC---CCEEEEeeC----C----Cc
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ-CLRRLE--RAHSEGVTSLVFSRD---GSQILSTSF----D----ST 330 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~--~~~~~~v~~~~~~~~---~~~l~~~~~----d----g~ 330 (513)
.....|+|.|+|+ |+++..+|.|++++ .+++ .+..+. .........++++|+ +..|+++.. + +.
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4567899999998 45556679999997 4554 222211 112356889999997 555555443 3 56
Q ss_pred EEEEecCCC--c-----ee-eEecc-cccceeEEEEccCCCEEEEEeC-------------CCcEEEEeCCCCceeEe--
Q 010324 331 ARIHGLKSG--K-----LL-KEFRG-HSSYVNDAIFTNDGSRVVTASS-------------DCTVKVWDLKSTDCLQT-- 386 (513)
Q Consensus 331 i~i~d~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~~~~-- 386 (513)
|..|+...+ . .+ ..+.. .......++|.|||.++++.+. .|.|..++... +....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCCC
Confidence 777876543 1 11 11221 1123577999999987776443 24555555432 10000
Q ss_pred ecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC---cEEEEEccCe--------------EEEEeecCccCCCcEEEEE
Q 010324 387 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS---SIYIMTLQGQ--------------VVKSFSSGKREGGDFVAAC 449 (513)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~---~i~i~d~~~~--------------~~~~~~~~~~~~~~~~~~~ 449 (513)
+.........-.....++|.|....++++-.... .|.+....+. .................++
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 0000000000123457888885435555443322 2332221110 0000000001123466777
Q ss_pred EC-------CCCCEEEEEecCceEEEEECCCc-eee--Eee-ecccCCeEEEEEcCCCCEEEEEE
Q 010324 450 VS-------PKGEWIYCVGEDRNLYCFSHQSG-KLE--HLM-KVHEKDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 450 ~s-------~~~~~l~~g~~dg~i~iwd~~~~-~~~--~~~-~~h~~~v~~~~~~p~~~~l~s~~ 503 (513)
+. .+|.++++....+.|...++... +.. ..+ .+....+..+++.|||.++++..
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 73 46766666667788988888753 322 222 22245789999999998777664
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.90 E-value=0.0028 Score=57.49 Aligned_cols=189 Identities=12% Similarity=0.104 Sum_probs=100.1
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCcc---e--eeecccccccCeEEEEEccCCCEEEEeeCC-----CcEEEEecCCC
Q 010324 275 DSEMLASGSQD-----GKIKVWRIRSGQ---C--LRRLERAHSEGVTSLVFSRDGSQILSTSFD-----STARIHGLKSG 339 (513)
Q Consensus 275 ~~~~l~s~~~d-----g~i~vwd~~~~~---~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 339 (513)
++..++.|+.+ ..+.+||..+++ - +..+. ........+.+ ++..++.|+.+ ..+.+||+.+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN-VRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS-SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC-CCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 56777777754 468999988765 2 22221 11112222222 67777777654 35889998776
Q ss_pred ceeeEecccccceeEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEE
Q 010324 340 KLLKEFRGHSSYVNDAIFTNDGSRVVTASSD-----CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 414 (513)
Q Consensus 340 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 414 (513)
+-...-..........+...+++.++.|+.+ ..+.+||+.+.+-...-..+.. ... .++... +..+++
T Consensus 139 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~----r~~-~~~~~~--~~~i~v 211 (301)
T 2vpj_A 139 QWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATK----RSG-AGVALL--NDHIYV 211 (301)
T ss_dssp EEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSC----CBS-CEEEEE--TTEEEE
T ss_pred eEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcc----ccc-ceEEEE--CCEEEE
Confidence 5332211111111111222356777777654 4588999887653322111111 111 112222 336666
Q ss_pred EEcCC-----CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC-----ceEEEEECCCce
Q 010324 415 VCNKT-----SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-----RNLYCFSHQSGK 475 (513)
Q Consensus 415 ~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~ 475 (513)
.|+.+ ..+.+||........+............+. .+++.++.|+.+ ..+.+||..+.+
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 66653 468999998665555543322222222222 266777777754 468889987764
No 309
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.89 E-value=0.0038 Score=56.70 Aligned_cols=225 Identities=10% Similarity=0.079 Sum_probs=112.0
Q ss_pred CCEEEEEeCC----CcEEEEEcCCcceeeeccc-ccccCeEEEEEccCCCEEEEeeCC-----CcEEEEecCCCceeeEe
Q 010324 276 SEMLASGSQD----GKIKVWRIRSGQCLRRLER-AHSEGVTSLVFSRDGSQILSTSFD-----STARIHGLKSGKLLKEF 345 (513)
Q Consensus 276 ~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~ 345 (513)
+..++.|+.+ ..+..||+.+.+-...-.. .....-..+.+ ++..++.|+.+ ..+.+||..+.+-...-
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455556543 3688888877653221110 11111122222 66777777755 35889998776533221
Q ss_pred cccccceeEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC--
Q 010324 346 RGHSSYVNDAIFTNDGSRVVTASSDC-----TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK-- 418 (513)
Q Consensus 346 ~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 418 (513)
..........+..-++..++.|+.++ .+.+||+.+.+-...-..+.. ... .+++.. +..+++.|+.
T Consensus 94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~----r~~-~~~~~~--~~~iyv~GG~~~ 166 (302)
T 2xn4_A 94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR----RSS-VGVGVV--GGLLYAVGGYDV 166 (302)
T ss_dssp CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC----CBS-CEEEEE--TTEEEEECCEET
T ss_pred CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc----ccC-ceEEEE--CCEEEEEeCCCC
Confidence 11111111111222567777777553 478889887653332111111 111 122222 2256666553
Q ss_pred -----CCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC-----ceEEEEECCCceeeEe--eecccCC
Q 010324 419 -----TSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-----RNLYCFSHQSGKLEHL--MKVHEKD 486 (513)
Q Consensus 419 -----~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~--~~~h~~~ 486 (513)
...+..||.....................+. .+++.++.|+.+ ..+.+||..+.+-... +......
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~ 244 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN 244 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc
Confidence 2458899988665555433322222222222 256777777754 3689999987653322 2111111
Q ss_pred eEEEEEcCCCCEEEEEECCC-----eEEeccC
Q 010324 487 VIGVTHHPHRNLLATYGEDC-----TMKLWKP 513 (513)
Q Consensus 487 v~~~~~~p~~~~l~s~~~dg-----~i~iWdp 513 (513)
...+.+ ++.+++.||.++ .+.+|||
T Consensus 245 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 245 AGVCAV--NGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp CEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred CeEEEE--CCEEEEECCcCCCcccccEEEEcC
Confidence 122222 677778887654 3677765
No 310
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.89 E-value=0.016 Score=53.83 Aligned_cols=249 Identities=11% Similarity=0.101 Sum_probs=122.9
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC---CCEEEEEe-C-----
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD---SEMLASGS-Q----- 284 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~-~----- 284 (513)
...+.++|.|+|+.|.++...|.|. +++.. +.....+.. ..............|+++|+ +..|..+. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~-~~~~~-g~~~~~~~~-~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELR-HWQAG-KGLSAPLSG-VPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEE-EEETT-TEECCCCBS-CCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEE-EEeCC-CceeeEecC-CcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 4568999999999344555678885 77743 322111110 00111123456789999996 44454442 2
Q ss_pred --CCcEEEEEcCCcc----eeee----ccc--ccccCeEEEEEccCCCEEEEeeC-------------CCcEEEEecCCC
Q 010324 285 --DGKIKVWRIRSGQ----CLRR----LER--AHSEGVTSLVFSRDGSQILSTSF-------------DSTARIHGLKSG 339 (513)
Q Consensus 285 --dg~i~vwd~~~~~----~~~~----~~~--~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~ 339 (513)
...|..|++..+. .... +.. ........++|.|||.+.++.+. .|.|.-++....
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 2356666654321 1111 110 11122457999999965555432 245766665422
Q ss_pred c------------eeeEe-cccccceeEEEEcc-CCCEEEEEeCC--CcEEEEeCCCCceeE--------e-----e---
Q 010324 340 K------------LLKEF-RGHSSYVNDAIFTN-DGSRVVTASSD--CTVKVWDLKSTDCLQ--------T-----F--- 387 (513)
Q Consensus 340 ~------------~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d--g~i~iwd~~~~~~~~--------~-----~--- 387 (513)
- ....+ .++. ....++|+| +|. |.++... +.=.|.-+..+.... . +
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence 0 11111 1232 367899999 554 4443322 112222222221100 0 0
Q ss_pred --------cCCCCCCCCCceeeEEEecCC------CCCeEEEEcCCCcEEEEEccCe-EEEEeecCccCCCcEEEEEECC
Q 010324 388 --------KPPPPLRGGDASVNSVHLFPK------NPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGKREGGDFVAACVSP 452 (513)
Q Consensus 388 --------~~~~~~~~~~~~v~~~~~~~~------~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~s~ 452 (513)
..+.....+...+..+.+... ...++++....+.|...++.+. ..............+..+++.|
T Consensus 253 ~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp CBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred cCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence 000000011234566666542 2356666667788888887643 2222111112234688999999
Q ss_pred CCCEEEEEe-cCceEE
Q 010324 453 KGEWIYCVG-EDRNLY 467 (513)
Q Consensus 453 ~~~~l~~g~-~dg~i~ 467 (513)
||.+.++.. .+|.|+
T Consensus 333 dG~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 333 DGYLYVLTDESSGELL 348 (353)
T ss_dssp TSCEEEEECSTTEEEE
T ss_pred CCcEEEEEeCCCCEEE
Confidence 998655443 355544
No 311
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=97.87 E-value=1.6e-05 Score=54.75 Aligned_cols=53 Identities=9% Similarity=0.394 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHhhcChHHHHHHHHhhcCccccccccHHHHHHHhccCChhhHHh
Q 010324 7 ARDVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILP 61 (513)
Q Consensus 7 ~~e~~~li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~~~~~~i~~g~w~~~~~ 61 (513)
++|+.+-|++||..+||.+++.+|.+|.+++.+. +... -..-+++-.|..|++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~-~~~~-ky~gLLEKKWTSViR 62 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNE-ELDK-KYAGLLEKKWTSVIR 62 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCH-HHHH-HHTTHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCc-hhhh-hhhhhhhhhHHHHHH
Confidence 5799999999999999999999999999988762 2222 467788889998888
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.84 E-value=0.0046 Score=56.21 Aligned_cols=223 Identities=8% Similarity=-0.013 Sum_probs=114.6
Q ss_pred CEEEEEeC--CCcEEEEEcCCcceeee--cccccccCeEEEEEccCCCEEEEeeCC----CcEEEEecCCCceeeEeccc
Q 010324 277 EMLASGSQ--DGKIKVWRIRSGQCLRR--LERAHSEGVTSLVFSRDGSQILSTSFD----STARIHGLKSGKLLKEFRGH 348 (513)
Q Consensus 277 ~~l~s~~~--dg~i~vwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~ 348 (513)
..++.|+. ...+.+||..+++-... +. ........+.+ ++..++.|+.+ ..+.+||+.+.+-...-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPF-EKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCS-CCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCC-cccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 35555654 35788999887653221 11 11112222222 66677787755 57889998877543221111
Q ss_pred ccceeEEEEccCCCEEEEEeCC------CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC----
Q 010324 349 SSYVNDAIFTNDGSRVVTASSD------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK---- 418 (513)
Q Consensus 349 ~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---- 418 (513)
.......+..-+++.++.|+.+ ..+.+||..+.+-...-..+... .. .+++.. +..+++.|+.
T Consensus 90 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~-~~~~~~--~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 90 TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR----CS-HGMVEA--NGLIYVCGGSLGNN 162 (306)
T ss_dssp SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC----BS-CEEEEE--TTEEEEECCEESCT
T ss_pred ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc----ce-eEEEEE--CCEEEEECCCCCCC
Confidence 1111111222356677777754 45889998876533221111111 11 111222 2255565543
Q ss_pred -----CCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC-----ceEEEEECCCceeeEe--eecccCC
Q 010324 419 -----TSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-----RNLYCFSHQSGKLEHL--MKVHEKD 486 (513)
Q Consensus 419 -----~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~--~~~h~~~ 486 (513)
...+.+||........+............+.+ +++.++.|+.+ ..+.+||..+.+-... +......
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred CcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 35588999986655555433222222222222 56677777643 4689999987653322 2222222
Q ss_pred eEEEEEcCCCCEEEEEECC-----CeEEeccC
Q 010324 487 VIGVTHHPHRNLLATYGED-----CTMKLWKP 513 (513)
Q Consensus 487 v~~~~~~p~~~~l~s~~~d-----g~i~iWdp 513 (513)
..++.+ ++.+++.||.+ ..+.+|||
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence 333333 67788888754 34666664
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.84 E-value=0.0046 Score=56.99 Aligned_cols=193 Identities=15% Similarity=0.124 Sum_probs=110.9
Q ss_pred EEEEEcCCCCEEEEE------------eCCCcEEEEEcCCcc-eeeeccc-c-----cccCeEEEEEcc--CCC-EEEEe
Q 010324 268 LCIEFSRDSEMLASG------------SQDGKIKVWRIRSGQ-CLRRLER-A-----HSEGVTSLVFSR--DGS-QILST 325 (513)
Q Consensus 268 ~~l~~~~~~~~l~s~------------~~dg~i~vwd~~~~~-~~~~~~~-~-----~~~~v~~~~~~~--~~~-~l~~~ 325 (513)
-+++..|+|..++++ ..+|.|.++|..+.. ....+.. + ..-....+.+.+ ++. +|+++
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 345556666544443 268999999987421 1222221 1 224667777766 354 44444
Q ss_pred e-C--CCcEEEEecCCCc----eeeEeccc-ccceeEEEEccCCCEEEEEeC-----------------CCcEEEEeCCC
Q 010324 326 S-F--DSTARIHGLKSGK----LLKEFRGH-SSYVNDAIFTNDGSRVVTASS-----------------DCTVKVWDLKS 380 (513)
Q Consensus 326 ~-~--dg~i~i~d~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~ 380 (513)
. . +.+|.+|++..+. .+..+.+. -...+++.+.++|.+.++... .|.|..+|..
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~- 211 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN- 211 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC-
Confidence 2 2 4677787765432 22333332 245789999999987776541 2455555543
Q ss_pred CceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeEE-EEeecCccCCCcEEEEEECC-CCCE
Q 010324 381 TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVV-KSFSSGKREGGDFVAACVSP-KGEW 456 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~-~~~~~~~~~~~~~~~~~~s~-~~~~ 456 (513)
+..... ..-...+.++|+|++..++++-+..+.|+.|++. +... ..... ..+..-.+++.+ +|++
T Consensus 212 -~~~~~~-------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 212 -DVRVVA-------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDL 280 (355)
T ss_dssp -CCEEEE-------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCE
T ss_pred -eEEEee-------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcE
Confidence 221111 1123568999999986677777788999999986 3221 11111 135567899999 5987
Q ss_pred EEEEecC-ceEEEEECC
Q 010324 457 IYCVGED-RNLYCFSHQ 472 (513)
Q Consensus 457 l~~g~~d-g~i~iwd~~ 472 (513)
.+++..+ +.|..|+..
T Consensus 281 wva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEESCHHHHHSCCTT
T ss_pred EEEecCCceEEEEECCC
Confidence 7766533 344445443
No 314
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.83 E-value=0.052 Score=58.62 Aligned_cols=130 Identities=9% Similarity=0.075 Sum_probs=71.6
Q ss_pred cEEEEeCCCCceeEeecCCCCCCCCCceeeEEE---ecCCCCCeEEEEc----------CCCcEEEEEccCeEEEEeecC
Q 010324 372 TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVH---LFPKNPDHIVVCN----------KTSSIYIMTLQGQVVKSFSSG 438 (513)
Q Consensus 372 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~l~~~~----------~~~~i~i~d~~~~~~~~~~~~ 438 (513)
.|++.|..+.+.+..+.... ...+.+++ +..+...++++|+ ..|.|++|++.+..++.+...
T Consensus 808 ~i~lidp~t~~~i~~~~l~~-----nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~ 882 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQ-----NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK 882 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCT-----TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeCCCCeEEEEEeCCC-----CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE
Confidence 36667776666665554332 23444444 3333347788876 358899999975555554443
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 439 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
. ..+.+++++-- +| +|++|- ..+|++|++...+.+..-..+-..|..+.....+++++.|..-..|.+
T Consensus 883 ~-v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~ 950 (1158)
T 3ei3_A 883 E-VKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLL 950 (1158)
T ss_dssp E-ESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEE
T ss_pred E-cCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEE
Confidence 3 25667776644 34 444443 578999999766533311111112332233234667777765444443
No 315
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.83 E-value=0.0029 Score=67.64 Aligned_cols=235 Identities=10% Similarity=0.133 Sum_probs=141.6
Q ss_pred CeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEE
Q 010324 235 GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLV 314 (513)
Q Consensus 235 g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 314 (513)
..| +|-|+.++....+.+. .--+.-.+|..+.+|.-. ..++.|+|+++.+.++.+. ...+|.-=.
T Consensus 48 ~~v-vIidl~~~~~~~rrpi-----------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWk 112 (1630)
T 1xi4_A 48 AQV-VIIDMNDPSNPIRRPI-----------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWK 112 (1630)
T ss_pred ceE-EEEECCCCCCcccccc-----------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEE
Confidence 367 5888887654322221 112334567666666554 6799999999988888775 456787778
Q ss_pred EccCCCEEEEeeCCCcEEEEecCC-CceeeEeccc----ccceeEEEEccCCCEEEEEe-------CCCcEEEEeCCCCc
Q 010324 315 FSRDGSQILSTSFDSTARIHGLKS-GKLLKEFRGH----SSYVNDAIFTNDGSRVVTAS-------SDCTVKVWDLKSTD 382 (513)
Q Consensus 315 ~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~ 382 (513)
|-.+ +.|+..+ +..|+.|++.. ..+++.+..| ...|..-..+++.++++..| -.|.+.+|..+.+.
T Consensus 113 Wis~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~ 190 (1630)
T 1xi4_A 113 WISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 190 (1630)
T ss_pred ecCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc
Confidence 8744 4555554 56899999964 2444444444 34576777788888877554 35788899887543
Q ss_pred eeEeecCCCCCCCCCceeeEEEec--CCCCCeEEEEcC---CCcEEEEEccCe----------EEEEeecCccCCCcEEE
Q 010324 383 CLQTFKPPPPLRGGDASVNSVHLF--PKNPDHIVVCNK---TSSIYIMTLQGQ----------VVKSFSSGKREGGDFVA 447 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~---~~~i~i~d~~~~----------~~~~~~~~~~~~~~~~~ 447 (513)
. +.+ .+|......+... +....++..+.. .+.+++.++... .+..+...........+
T Consensus 191 s-Q~i------egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~ 263 (1630)
T 1xi4_A 191 S-QPI------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA 263 (1630)
T ss_pred c-hhh------hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceE
Confidence 2 111 1333333222221 111123332222 268888887421 11112222223445668
Q ss_pred EEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEc
Q 010324 448 ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHH 493 (513)
Q Consensus 448 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 493 (513)
+..|+.-..++..+.-|.|+++|+.||.++..-+-...+|...+-+
T Consensus 264 ~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~ 309 (1630)
T 1xi4_A 264 MQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH 309 (1630)
T ss_pred EEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccC
Confidence 8889999999999999999999999998775544444444443333
No 316
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.83 E-value=0.02 Score=53.16 Aligned_cols=235 Identities=13% Similarity=0.119 Sum_probs=122.0
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC---CCEEEEEeC----C
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD---SEMLASGSQ----D 285 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~----d 285 (513)
-...+.++|.|+|+++++ ..+|.|. +++ .++. ..+...+ ...........|+++|+ +..|..+.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~-~~d-~~G~--~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~ 100 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLV-LIS-PSGK--KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG 100 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEE-EEC-SSCE--EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEE-EEe-CCCc--eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence 345789999999985554 5569885 776 3443 1111000 11123456899999997 555554433 2
Q ss_pred ----CcEEEEEcCCc-------cee-eecccccccCeEEEEEccCCCEEEEeeC-------------CCcEEEEecCCCc
Q 010324 286 ----GKIKVWRIRSG-------QCL-RRLERAHSEGVTSLVFSRDGSQILSTSF-------------DSTARIHGLKSGK 340 (513)
Q Consensus 286 ----g~i~vwd~~~~-------~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~ 340 (513)
+.|..|+...+ +.+ ..+..........++|.|||.+.++.+. .|.|.-++.. ++
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~ 179 (354)
T 3a9g_A 101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GR 179 (354)
T ss_dssp GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SC
T ss_pred CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CC
Confidence 56777776543 111 1121111223467999999986666432 2456666653 22
Q ss_pred ----------eeeEecccccceeEEEEcc-CCCEEEEEeCCC---cEEEEeCCCCceeE-----------eecCCC-CCC
Q 010324 341 ----------LLKEFRGHSSYVNDAIFTN-DGSRVVTASSDC---TVKVWDLKSTDCLQ-----------TFKPPP-PLR 394 (513)
Q Consensus 341 ----------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg---~i~iwd~~~~~~~~-----------~~~~~~-~~~ 394 (513)
.+.. .++. ....++|+| +|..+++-...+ .|.+.. .+.... .+..+. ...
T Consensus 180 ~p~~npf~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~ 255 (354)
T 3a9g_A 180 PPADNPFPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG 255 (354)
T ss_dssp CCTTSSSTTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred CCCCCCCCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC
Confidence 1111 1232 356899999 566544433222 133322 221000 000000 000
Q ss_pred CCCceeeEEEecC------CCCCeEEEEcCCCcEEEEEccC--eEE--EEeecCccCCCcEEEEEECCCCCEEEEEe
Q 010324 395 GGDASVNSVHLFP------KNPDHIVVCNKTSSIYIMTLQG--QVV--KSFSSGKREGGDFVAACVSPKGEWIYCVG 461 (513)
Q Consensus 395 ~~~~~v~~~~~~~------~~~~~l~~~~~~~~i~i~d~~~--~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 461 (513)
........+.+.. ....++++....+.|...++.+ ... ..+.. .....+..+++.|||.+.++..
T Consensus 256 ~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~--~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 256 SETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK--NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT--TTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc--CCCCCeeEEEECCCCcEEEEEe
Confidence 1123566777742 2235666666677888888873 222 22221 1235688999999997655553
No 317
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.82 E-value=0.034 Score=57.77 Aligned_cols=235 Identities=10% Similarity=0.104 Sum_probs=135.1
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceee
Q 010324 264 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK 343 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 343 (513)
...|.+|.-..+| +|..|+.+| +..||-.+-+............|.++.-..+| .|..|+.+| +..||..+.+...
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence 5679999988877 466677777 56677332111111111224568888777665 566777655 7899987764332
Q ss_pred EecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEE
Q 010324 344 EFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 423 (513)
Q Consensus 344 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 423 (513)
........|.++.. .+| .+..++.+ .+..||..+++... +..... ......|.++....++ .+.+++.. -+.
T Consensus 97 ~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~-~~~~~~-~l~~~~i~~i~~d~~g--~lWigt~~-Gl~ 168 (758)
T 3ott_A 97 PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTS-FDTRRN-GLPNNTIYSIIRTKDN--QIYVGTYN-GLC 168 (758)
T ss_dssp CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEE-ECHHHH-CCSCSCEEEEEECTTC--CEEEEETT-EEE
T ss_pred cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEE-eccCCC-CcCCCeEEEEEEcCCC--CEEEEeCC-CHh
Confidence 11112234666654 344 56666666 58889987655332 210000 0112356777666544 44445554 477
Q ss_pred EEEccCeEEEEeecCcc---CCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEE
Q 010324 424 IMTLQGQVVKSFSSGKR---EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 500 (513)
Q Consensus 424 i~d~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 500 (513)
.++........+..... ....+.++...+++..|..|+. +.+..+|..+++...........|.++...+++.+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi 247 (758)
T 3ott_A 169 RYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA 247 (758)
T ss_dssp EEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE
T ss_pred hCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE
Confidence 78876554443322111 1234778888887777777774 5688899887754332222334688888887777665
Q ss_pred EEECCCeEEeccC
Q 010324 501 TYGEDCTMKLWKP 513 (513)
Q Consensus 501 s~~~dg~i~iWdp 513 (513)
. +.+| +.++++
T Consensus 248 g-T~~G-l~~~~~ 258 (758)
T 3ott_A 248 G-TDNG-LYVYHN 258 (758)
T ss_dssp E-ETTE-EEEECC
T ss_pred E-eCCc-eeEEec
Confidence 4 4454 666553
No 318
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.76 E-value=0.073 Score=57.49 Aligned_cols=223 Identities=15% Similarity=0.129 Sum_probs=117.5
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC------CCEEEEEeC-CC
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD------SEMLASGSQ-DG 286 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------~~~l~s~~~-dg 286 (513)
..|.+++.+. .+++.++ ++.+ +++.++.+++.... ... -...|.|+++.|. +++++.|.. |+
T Consensus 514 ~~I~~As~n~--~~vvva~-g~~l-~~fel~~~~L~~~~----~~~---l~~evscl~i~~~~~~~~~s~~~aVg~~~d~ 582 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAV-GRAL-YYLQIHPQELRQIS----HTE---MEHEVACLDITPLGDSNGLSPLCAIGLWTDI 582 (1158)
T ss_dssp CCCCEEEECS--SEEEEEE-TTEE-EEEEEETTEEEEEE----EEE---CSSCEEEEECCCCSSSTTCCSEEEEEETTTT
T ss_pred CEEEEEEeCC--CEEEEEE-CCEE-EEEEeeCCceeeec----ccC---CCCceEEEEeecCCCCcccccEEEEEECCCC
Confidence 3455555443 4666664 5677 47777655432211 111 3567999999873 469999997 99
Q ss_pred cEEEEEcCCcceeeecccccccCeEEEEEcc--CCCEEEEeeCCCcEEEEec--CCCceeeE--ecccccceeEEEEccC
Q 010324 287 KIKVWRIRSGQCLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIHGL--KSGKLLKE--FRGHSSYVNDAIFTND 360 (513)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~--~~~~~~~~--~~~~~~~v~~~~~~~~ 360 (513)
+++|+++.+.+.+.....+......++.+.. ...+|..|-.||.+..+.+ .+|..... ..-...++.-..+...
T Consensus 583 tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~ 662 (1158)
T 3ei3_A 583 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSL 662 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESS
T ss_pred EEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeC
Confidence 9999999876655443322223444554432 3457889999998765544 44544322 1111234444444444
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEE-ecCC-CCCeEEEEcCCCcEEEEEcc---CeEEEEe
Q 010324 361 GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVH-LFPK-NPDHIVVCNKTSSIYIMTLQ---GQVVKSF 435 (513)
Q Consensus 361 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~-~~~~l~~~~~~~~i~i~d~~---~~~~~~~ 435 (513)
|..-+.+..+....+|.-. ++...+ +. ....+..++ |+.. .++-++..+ ++.+++..+. .-.++.+
T Consensus 663 ~~~~V~a~s~rp~liy~~~-~~l~~s--~l-----~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~i 733 (1158)
T 3ei3_A 663 STTNVFACSDRPTVIYSSN-HKLVFS--NV-----NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTV 733 (1158)
T ss_dssp SCEEEEEESSSCEEEEESS-SSEEEE--EB-----SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEE
T ss_pred CceeEEEECCCCEEEEEcC-CceEEe--cc-----ChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEE
Confidence 4444444445555555433 232211 10 011233332 3322 234555444 4458888775 2233333
Q ss_pred ecCccCCCcEEEEEECCCCCEEEEE
Q 010324 436 SSGKREGGDFVAACVSPKGEWIYCV 460 (513)
Q Consensus 436 ~~~~~~~~~~~~~~~s~~~~~l~~g 460 (513)
.. +..+..++++|..+.++.+
T Consensus 734 pL----~~Tprri~y~~~~~~~~v~ 754 (1158)
T 3ei3_A 734 PL----YESPRKICYQEVSQCFGVL 754 (1158)
T ss_dssp EC----SSEEEEEEEEGGGTEEEEE
T ss_pred eC----CCCceEEEEcCCCCEEEEE
Confidence 22 2346677777766654443
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.75 E-value=0.011 Score=54.49 Aligned_cols=200 Identities=16% Similarity=0.178 Sum_probs=110.0
Q ss_pred ceeEEEECCCCCEEEEE------------ecCCeEEEEEecccccc-ccccccccccccccCCccEEEEEEcC--CCC-E
Q 010324 215 HAECARFSPDGQFLVSC------------SFDGFIEVVWDYLSGKL-KKDLQYQADETFMMHDETVLCIEFSR--DSE-M 278 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g------------~~dg~i~~iwd~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~-~ 278 (513)
....+...|+|..++++ ..+|.| +++|.++... ...+..... .+....-....+.+.+ ++. +
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I-~~~d~~~~~~~~~~l~~~g~-~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKI-LLMDLNEKEPAVSELEIIGN-TLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEE-EEEETTSSSCCEEECEEECS-SCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeE-EEEecCCCCCceEEEEccCC-CCCcCceeeeeeEEEECCCCcEE
Confidence 34556678877655554 268999 5999874321 112211100 0111233566677655 453 4
Q ss_pred EEEEe-C--CCcEEEEEcCCcc----eeeecccccccCeEEEEEccCCCEEEEee-----------------CCCcEEEE
Q 010324 279 LASGS-Q--DGKIKVWRIRSGQ----CLRRLERAHSEGVTSLVFSRDGSQILSTS-----------------FDSTARIH 334 (513)
Q Consensus 279 l~s~~-~--dg~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~i~ 334 (513)
|+.+. . +.+|.+|++..+. .+..+....-...+.+++.++|.+.++.. ..|.|+.+
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 54443 2 4678888876532 22333322335688999999998766653 12456666
Q ss_pred ecCCCceeeEecccccceeEEEEccCCCEEEEEe-CCCcEEEEeCCC-Cce--eEeecCCCCCCCCCceeeEEEecCC-C
Q 010324 335 GLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWDLKS-TDC--LQTFKPPPPLRGGDASVNSVHLFPK-N 409 (513)
Q Consensus 335 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~v~~~~~~~~-~ 409 (513)
|. ++ +..+...-...+.++|+||++.+..+. ..+.|..|++.. +.. ...+. .......+++.++ +
T Consensus 209 d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-------~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 209 SP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-------FDTLVDNISVDPVTG 278 (355)
T ss_dssp CT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-------CSSEEEEEEECTTTC
T ss_pred EC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-------CCCCCceEEEeCCCC
Confidence 54 33 222322334578999999998777665 578899999863 322 11221 1345677777773 4
Q ss_pred CCeEEEEcCC-CcEEEEEc
Q 010324 410 PDHIVVCNKT-SSIYIMTL 427 (513)
Q Consensus 410 ~~~l~~~~~~-~~i~i~d~ 427 (513)
.+.+++..+ +.|..|+.
T Consensus 279 -~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 279 -DLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp -CEEEEEESCHHHHHSCCT
T ss_pred -cEEEEecCCceEEEEECC
Confidence 555544322 34443433
No 320
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.71 E-value=0.016 Score=52.88 Aligned_cols=214 Identities=12% Similarity=0.010 Sum_probs=106.3
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeC----C-------CcEEEEecCCCceeeEec
Q 010324 278 MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF----D-------STARIHGLKSGKLLKEFR 346 (513)
Q Consensus 278 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-------g~i~i~d~~~~~~~~~~~ 346 (513)
+++.|+ ..+..||..+++-...-...........+...++..++.|+. + ..+..||..+.+-...-.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344454 578999988876432111011122223333447778888873 1 127788887765422111
Q ss_pred ccccce-eEEEEccCCCEEEEEeCC--------CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc
Q 010324 347 GHSSYV-NDAIFTNDGSRVVTASSD--------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN 417 (513)
Q Consensus 347 ~~~~~v-~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 417 (513)
...... .+++. -++..++.|+.+ ..+.+||..+.+-...-..+.. ... .+++.. +..+++.|+
T Consensus 85 ~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~----r~~-~~~~~~--~~~iyv~GG 156 (315)
T 4asc_A 85 LPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV----VYG-HTVLSH--MDLVYVIGG 156 (315)
T ss_dssp BSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC----CBS-CEEEEE--TTEEEEECC
T ss_pred CCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc----ccc-eeEEEE--CCEEEEEeC
Confidence 111111 11222 255666666632 4588999987642221111111 111 122222 225666666
Q ss_pred C------CCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc-----eEEEEECCCceeeEe--eeccc
Q 010324 418 K------TSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR-----NLYCFSHQSGKLEHL--MKVHE 484 (513)
Q Consensus 418 ~------~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~--~~~h~ 484 (513)
. ...+.+||.....................+. -+++.++.|+.++ .+.+||..+.+-... +....
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 234 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER 234 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence 5 2468999988665555443322222222222 2667777777543 588999987653322 21111
Q ss_pred CCeEEEEEcCCCCEEEEEECC
Q 010324 485 KDVIGVTHHPHRNLLATYGED 505 (513)
Q Consensus 485 ~~v~~~~~~p~~~~l~s~~~d 505 (513)
.....+.+ ++.+++.||.+
T Consensus 235 ~~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 235 SSLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp BSCEEEEE--TTEEEEEEEEE
T ss_pred cceeEEEE--CCEEEEECCcc
Confidence 12223333 56777777764
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.70 E-value=0.006 Score=55.53 Aligned_cols=225 Identities=11% Similarity=0.035 Sum_probs=113.4
Q ss_pred CCCEEEEEeCC----CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeC----C-----CcEEEEecCCCce
Q 010324 275 DSEMLASGSQD----GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF----D-----STARIHGLKSGKL 341 (513)
Q Consensus 275 ~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~i~d~~~~~~ 341 (513)
++..++.|+.+ ..+.+||..+++-...-.......-.+++.. ++..++.|+. + ..+.+||+.+.+-
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 56667777632 3688999877653222110111111122222 6667777765 2 4688899877653
Q ss_pred eeE--ecccccceeEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEE
Q 010324 342 LKE--FRGHSSYVNDAIFTNDGSRVVTASSD-----CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 414 (513)
Q Consensus 342 ~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 414 (513)
... +.........+. -+++.++.|+.+ ..+.+||+.+.+-...-..+.. ......+.+ +..+++
T Consensus 103 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r~~~~~~~~---~~~iyv 173 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR----RIGVGVAVL---NRLLYA 173 (308)
T ss_dssp EECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC----CBSCEEEEE---TTEEEE
T ss_pred eECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc----ccceEEEEE---CCEEEE
Confidence 322 111111122222 256666766643 3588999887653322111111 111112222 336666
Q ss_pred EEcCC-----CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC-----ceEEEEECCCceeeEe--eec
Q 010324 415 VCNKT-----SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-----RNLYCFSHQSGKLEHL--MKV 482 (513)
Q Consensus 415 ~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~--~~~ 482 (513)
.|+.+ ..+..||.....................+.+ +++.++.|+.+ ..+.+||+.+.+-... +..
T Consensus 174 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 251 (308)
T 1zgk_A 174 VGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 251 (308)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred EeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence 66544 4688999886655554433222222222222 66777777754 5699999987654322 211
Q ss_pred ccCCeEEEEEcCCCCEEEEEECCC-----eEEeccC
Q 010324 483 HEKDVIGVTHHPHRNLLATYGEDC-----TMKLWKP 513 (513)
Q Consensus 483 h~~~v~~~~~~p~~~~l~s~~~dg-----~i~iWdp 513 (513)
.......+.+ ++.+++.||.++ .+.+|||
T Consensus 252 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 252 RRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp CCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEET
T ss_pred CccceEEEEE--CCEEEEEcCcCCCcccceEEEEcC
Confidence 1112222222 567777777543 3556654
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.66 E-value=0.0085 Score=54.30 Aligned_cols=189 Identities=12% Similarity=0.111 Sum_probs=98.7
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCcceeeecccc-cccCeEEEEEccCCCEEEEeeCCC-----cEEEEecCCCceee
Q 010324 275 DSEMLASGSQD-----GKIKVWRIRSGQCLRRLERA-HSEGVTSLVFSRDGSQILSTSFDS-----TARIHGLKSGKLLK 343 (513)
Q Consensus 275 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~ 343 (513)
++..++.|+.+ ..+.+||..+.+-...-... .......+.+ ++..++.|+.++ .+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 56677777654 35888998776532221111 1112222222 667777777654 57788987665332
Q ss_pred E--ecccccceeEEEEccCCCEEEEEeCC-------CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEE
Q 010324 344 E--FRGHSSYVNDAIFTNDGSRVVTASSD-------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 414 (513)
Q Consensus 344 ~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 414 (513)
. +....... +++. -+++.++.|+.+ ..+.+||+.+.+-...-..+... .. .++... +..+++
T Consensus 139 ~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~-~~~~~~--~~~iyv 209 (302)
T 2xn4_A 139 VAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR----SG-AGVGVL--NNLLYA 209 (302)
T ss_dssp ECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC----BS-CEEEEE--TTEEEE
T ss_pred cCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc----cc-ccEEEE--CCEEEE
Confidence 2 11111111 2222 256666666542 35889999876533221111111 11 122222 236667
Q ss_pred EEcCC-----CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc-----eEEEEECCCcee
Q 010324 415 VCNKT-----SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR-----NLYCFSHQSGKL 476 (513)
Q Consensus 415 ~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-----~i~iwd~~~~~~ 476 (513)
.|+.+ ..+.+||........+............+. .+++.++.|+.++ .+.+||..+.+-
T Consensus 210 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 210 VGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp ECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred ECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 76654 468899998665555543322222122222 3677777777553 489999887653
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.65 E-value=0.011 Score=53.79 Aligned_cols=230 Identities=8% Similarity=0.040 Sum_probs=116.4
Q ss_pred CEEEEEecC--CeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCC----CcEEEEEcCCccee
Q 010324 226 QFLVSCSFD--GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD----GKIKVWRIRSGQCL 299 (513)
Q Consensus 226 ~~la~g~~d--g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~ 299 (513)
..++.|+.+ ..+. .||..+++-....... .....-..+.+ ++..++.|+.+ ..+.+||..+++-.
T Consensus 13 ~l~~~GG~~~~~~~~-~~d~~~~~W~~~~~~p------~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~ 83 (306)
T 3ii7_A 13 YRIALFGGSQPQSCR-YFNPKDYSWTDIRCPF------EKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWY 83 (306)
T ss_dssp EEEEEECCSSTTSEE-EEETTTTEEEECCCCS------CCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEE
T ss_pred eEEEEeCCCCCceEE-EecCCCCCEecCCCCC------cccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEE
Confidence 355566543 4563 8888776533211111 01111122222 56677777754 57889998876532
Q ss_pred eeccc-ccccCeEEEEEccCCCEEEEeeCC------CcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC---
Q 010324 300 RRLER-AHSEGVTSLVFSRDGSQILSTSFD------STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS--- 369 (513)
Q Consensus 300 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--- 369 (513)
..-.. ........+.+ ++..++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.|+.
T Consensus 84 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 84 SKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGN 161 (306)
T ss_dssp EEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESC
T ss_pred ECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCC
Confidence 22111 11112222222 67777787765 46889998876543321111111111112235666666653
Q ss_pred ------CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC-----CcEEEEEccCeEEEEeecC
Q 010324 370 ------DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-----SSIYIMTLQGQVVKSFSSG 438 (513)
Q Consensus 370 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~ 438 (513)
-..+.+||+.+.+-...-..+.. .. -.++... +..+++.|+.+ ..+.+||........+...
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r~-~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 234 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTELCPMIEA----RK-NHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM 234 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEECCCSSC----CB-SCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC
T ss_pred CCcccccceEEEeCCCCCeEEECCCccch----hh-cceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC
Confidence 34588999987643222111111 11 1122222 22566666543 4688999886655555433
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecC-----ceEEEEECCCce
Q 010324 439 KREGGDFVAACVSPKGEWIYCVGED-----RNLYCFSHQSGK 475 (513)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~ 475 (513)
.........+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 235 p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 235 PWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp SCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 222222222333 67778888744 568999988764
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.60 E-value=0.032 Score=51.78 Aligned_cols=244 Identities=10% Similarity=0.095 Sum_probs=124.1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecc------cccccCeEEEEEccC---CCEEEEee-C-------
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE------RAHSEGVTSLVFSRD---GSQILSTS-F------- 327 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~~~v~~~~~~~~---~~~l~~~~-~------- 327 (513)
.....|+|.|+|+.|+++...|.|++++.. +.....+. .........++++|+ +..|+++. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 356899999999844455678999999843 33211111 112346789999996 45555443 2
Q ss_pred CCcEEEEecCCC--c--eee----Eecc---cccceeEEEEccCCCEEEEEeCC-------------CcEEEEeCCCCce
Q 010324 328 DSTARIHGLKSG--K--LLK----EFRG---HSSYVNDAIFTNDGSRVVTASSD-------------CTVKVWDLKSTDC 383 (513)
Q Consensus 328 dg~i~i~d~~~~--~--~~~----~~~~---~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~ 383 (513)
...|..++...+ . ... .+.. .......++|.|||.++++.+.. |.|.-+|....-.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666666432 1 111 1111 11224679999999766655432 4566666543100
Q ss_pred eE-eec-----CCCCCCCCCceeeEEEecCCCCCeEEEEcC-CC--cEEEEEccCe---EEEE-----------------
Q 010324 384 LQ-TFK-----PPPPLRGGDASVNSVHLFPKNPDHIVVCNK-TS--SIYIMTLQGQ---VVKS----------------- 434 (513)
Q Consensus 384 ~~-~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-~~--~i~i~d~~~~---~~~~----------------- 434 (513)
.. .+. ........-.....++|.|....++++-.. ++ .|.+....+. ....
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 00 000 000000011246778888844244333222 11 2221110000 0000
Q ss_pred ---eecC---ccCCCcEEEEEECC-------CCCEEEEEecCceEEEEECCCceeeEe---eecccCCeEEEEEcCCCCE
Q 010324 435 ---FSSG---KREGGDFVAACVSP-------KGEWIYCVGEDRNLYCFSHQSGKLEHL---MKVHEKDVIGVTHHPHRNL 498 (513)
Q Consensus 435 ---~~~~---~~~~~~~~~~~~s~-------~~~~l~~g~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~~~~~p~~~~ 498 (513)
+... ..+...+..+++.. +|.++++....+.|...++..++.... +......+..+++.|+|.+
T Consensus 257 ~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~l 336 (353)
T 2g8s_A 257 VAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYL 336 (353)
T ss_dssp CTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCE
T ss_pred CCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcE
Confidence 0000 00112355666653 466776666788888888876654322 2222357899999999997
Q ss_pred EEEEE-CCCeEE
Q 010324 499 LATYG-EDCTMK 509 (513)
Q Consensus 499 l~s~~-~dg~i~ 509 (513)
+++.. .+|.|.
T Consensus 337 yv~td~~~g~I~ 348 (353)
T 2g8s_A 337 YVLTDESSGELL 348 (353)
T ss_dssp EEEECSTTEEEE
T ss_pred EEEEeCCCCEEE
Confidence 76543 456554
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.56 E-value=0.048 Score=50.03 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=84.2
Q ss_pred cccCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC---CCEEEEE-e--C
Q 010324 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD---SEMLASG-S--Q 284 (513)
Q Consensus 211 ~h~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~-~--~ 284 (513)
..-...+.++|.|||+++++--..|.|. +++..++.... +. .....+.........|+++|+ +..|... + .
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~-~v~~~~g~~~~-v~-~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATIT-RVDAKTGRKTE-LG-EVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEE-EECTTTCCEEE-EE-ECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEE-EEECCCCcEee-ec-ccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 3345678999999999887776689995 77765544311 10 001122234567899999995 3444443 2 3
Q ss_pred CCcEEEEEcCCcc----------ee-eecccccccCeEEEEEccCCCEEEEeeC-------------CCcEEEEecCCC-
Q 010324 285 DGKIKVWRIRSGQ----------CL-RRLERAHSEGVTSLVFSRDGSQILSTSF-------------DSTARIHGLKSG- 339 (513)
Q Consensus 285 dg~i~vwd~~~~~----------~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~- 339 (513)
++.|.-|....+. .+ ..+.......-..++|.|||.+.++.+. .|.|.-.+....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 4566666655421 11 1121112223467999999987776542 355555554321
Q ss_pred --------ceeeEecccccceeEEEEccCCCEEEE
Q 010324 340 --------KLLKEFRGHSSYVNDAIFTNDGSRVVT 366 (513)
Q Consensus 340 --------~~~~~~~~~~~~v~~~~~~~~~~~l~~ 366 (513)
..+. -.++.. ...++|+|+|...++
T Consensus 186 p~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~ 218 (347)
T 3das_A 186 APGNPFPGSPVY-SYGHRN-VQGLAWDDKQRLFAS 218 (347)
T ss_dssp CTTCSSTTCCEE-EBCCSB-CCEEEECTTCCEEEE
T ss_pred cCCCCCCCCeEE-eeCCCC-cceEEECCCCCEEEE
Confidence 0111 123433 567889888765444
No 326
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.53 E-value=0.07 Score=51.29 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=63.0
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCC---CCEEEEEeC-----
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD---SEMLASGSQ----- 284 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~----- 284 (513)
-...+.++|.|+|+++++-...+.|. +++..++.......................|+|+|+ +..|..+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~-~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKIL-RVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEE-EECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEE-EEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34568999999999777765545674 776544443211111100000113567889999995 555554432
Q ss_pred --------CCcEEEEEcCCc-------ceee-ecccccccCeEEEEEccCCCEEEEee
Q 010324 285 --------DGKIKVWRIRSG-------QCLR-RLERAHSEGVTSLVFSRDGSQILSTS 326 (513)
Q Consensus 285 --------dg~i~vwd~~~~-------~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~ 326 (513)
...|.-++...+ +.+. .+..........++|.|||.+.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 134555554322 1111 12212234578999999998777644
No 327
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.51 E-value=0.036 Score=50.50 Aligned_cols=230 Identities=10% Similarity=-0.003 Sum_probs=112.8
Q ss_pred EEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC----C-------CcEEEEEcCC
Q 010324 227 FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ----D-------GKIKVWRIRS 295 (513)
Q Consensus 227 ~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----d-------g~i~vwd~~~ 295 (513)
+++.|+ ..+ ..||..+++-.. .. +..........+...++..++.|+. + ..+.+||..+
T Consensus 7 l~~~GG--~~~-~~yd~~~~~W~~-~~------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~ 76 (315)
T 4asc_A 7 IFMISE--EGA-VAYDPAANECYC-AS------LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD 76 (315)
T ss_dssp EEEEET--TEE-EEEETTTTEEEE-EE------CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT
T ss_pred EEEEcC--Cce-EEECCCCCeEec-CC------CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCC
Confidence 344555 456 388988766321 11 1111111222233347778888873 1 1277888877
Q ss_pred cceeeeccccc-ccCeEEEEEccCCCEEEEeeCC--------CcEEEEecCCCceeeEecccccceeEEEEccCCCEEEE
Q 010324 296 GQCLRRLERAH-SEGVTSLVFSRDGSQILSTSFD--------STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVT 366 (513)
Q Consensus 296 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 366 (513)
++-...-.... ......+.+ ++..++.|+.+ ..+.+||..+.+-...-..........+...+++.++.
T Consensus 77 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 154 (315)
T 4asc_A 77 SEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVI 154 (315)
T ss_dssp TEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred CeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEE
Confidence 65322111011 111122222 56677777642 45889998776532211111111111222245667777
Q ss_pred EeC-C-----CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC-----cEEEEEccCeEEEEe
Q 010324 367 ASS-D-----CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS-----SIYIMTLQGQVVKSF 435 (513)
Q Consensus 367 ~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~~~~~~ 435 (513)
|+. + ..+.+||+.+.+-...-..+.. ... .++... +..+++.|+.++ .+.+||........+
T Consensus 155 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 227 (315)
T 4asc_A 155 GGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA----RSL-FGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF 227 (315)
T ss_dssp CCBCTTSCBCCCEEEEETTTTEEEECCCCSSC----CBS-CEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred eCCCCCCcccceEEEEeCCCCeEEECCCCCCc----hhc-eEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence 765 2 4689999887643221111111 111 112222 336667766543 588888886655555
Q ss_pred ecCccCCCcEEEEEECCCCCEEEEEecC--------------ceEEEEECCCceee
Q 010324 436 SSGKREGGDFVAACVSPKGEWIYCVGED--------------RNLYCFSHQSGKLE 477 (513)
Q Consensus 436 ~~~~~~~~~~~~~~~s~~~~~l~~g~~d--------------g~i~iwd~~~~~~~ 477 (513)
............+. -+++.++.|+.+ ..+.+||..+.+-.
T Consensus 228 ~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 228 EAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred CCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 43322222222222 256777777753 24778888776533
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00084 Score=61.30 Aligned_cols=199 Identities=12% Similarity=0.079 Sum_probs=106.4
Q ss_pred CEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEc--c-CCCEEEEe-eCCCcEEEEecCCCceeeEeccc----
Q 010324 277 EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS--R-DGSQILST-SFDSTARIHGLKSGKLLKEFRGH---- 348 (513)
Q Consensus 277 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~---- 348 (513)
..++.++.||.|.-.|..+|+...++......++....-. + ++..++.. +.||.|+.++..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 4688899999999999999999988863311233221100 1 22333343 58999999999888655444321
Q ss_pred ccceeE---EEE-c----cCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCC-ceeeEEEec----CCCCCeEEE
Q 010324 349 SSYVND---AIF-T----NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGD-ASVNSVHLF----PKNPDHIVV 415 (513)
Q Consensus 349 ~~~v~~---~~~-~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~----~~~~~~l~~ 415 (513)
..++.. ... . ..+..+++|+.+|.+...|+++|+.+..+.......... ....+.... ......++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 111111 001 0 135578899999999999999999999886442110000 000011100 011245666
Q ss_pred EcCCCcEEEEEccCeEEEE-----eecCccCCCcEE-EEEECCCCCEEEEEecCceEEEEECCCceeeE
Q 010324 416 CNKTSSIYIMTLQGQVVKS-----FSSGKREGGDFV-AACVSPKGEWIYCVGEDRNLYCFSHQSGKLEH 478 (513)
Q Consensus 416 ~~~~~~i~i~d~~~~~~~~-----~~~~~~~~~~~~-~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 478 (513)
+..+..+.+.+..|. ... ...... ...+. ....+.++.+ ++++.||.|+.+|..+|..+.
T Consensus 171 g~~~y~v~~~~~sG~-~W~~~~s~~~~~~~-~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHSYDGA-SYNVTYSTWQQNVL-DVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECCTTSC-CCCCEEEEEECCTT-THHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEECCCCC-eEEEeccccccccc-ccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 555555555442221 110 000000 00000 0001234565 557889999999988888766
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.47 E-value=0.019 Score=52.19 Aligned_cols=233 Identities=9% Similarity=0.030 Sum_probs=117.1
Q ss_pred CCCCCEEEEEecC----CeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeC----C-----CcE
Q 010324 222 SPDGQFLVSCSFD----GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ----D-----GKI 288 (513)
Q Consensus 222 s~~g~~la~g~~d----g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----d-----g~i 288 (513)
.-++..++.|+.+ ..+. +||..+.+-......+. ...+| ..+.+ ++..++.|+. + ..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~-~~d~~~~~W~~~~~~p~--~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~ 92 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLE-AYNPSNGTWLRLADLQV--PRSGL----AGCVV--GGLLYAVGGRNNSPDGNTDSSAL 92 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEE-EEETTTTEEEECCCCSS--CCBSC----EEEEE--TTEEEEECCEEEETTEEEECCCE
T ss_pred CCCCEEEEEeCcCCCCcceEE-EEcCCCCeEeECCCCCc--ccccc----eEEEE--CCEEEEECCCcCCCCCCeecceE
Confidence 3356677777742 3563 78877655332211111 01112 12222 5667777665 2 468
Q ss_pred EEEEcCCcceeeeccc-ccccCeEEEEEccCCCEEEEeeCC-----CcEEEEecCCCceeeE--ecccccceeEEEEccC
Q 010324 289 KVWRIRSGQCLRRLER-AHSEGVTSLVFSRDGSQILSTSFD-----STARIHGLKSGKLLKE--FRGHSSYVNDAIFTND 360 (513)
Q Consensus 289 ~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~ 360 (513)
.+||..+.+-...-.. ........+.+ ++..++.|+.+ ..+.+||+.+.+-... +......-..+.+ +
T Consensus 93 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 168 (308)
T 1zgk_A 93 DCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--N 168 (308)
T ss_dssp EEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T
T ss_pred EEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--C
Confidence 8899877653221110 11112222233 66777777644 4688899877653322 1111111122222 5
Q ss_pred CCEEEEEeCC-----CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCC-----CcEEEEEccCe
Q 010324 361 GSRVVTASSD-----CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-----SSIYIMTLQGQ 430 (513)
Q Consensus 361 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~ 430 (513)
++.++.|+.+ ..+.+||+.+.+-...-..+. .... .++... +..+++.|+.+ ..+.+||+...
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~----~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT----IRSG-AGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS----CCBS-CEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC----cccc-ceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 6677776654 458899988764322211111 1111 122222 33666666654 56899999866
Q ss_pred EEEEeecCccCCCcEEEEEECCCCCEEEEEecC-----ceEEEEECCCcee
Q 010324 431 VVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-----RNLYCFSHQSGKL 476 (513)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~~ 476 (513)
....+............+. -+++.++.|+.+ ..+.+||..+.+-
T Consensus 242 ~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 242 TWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred cEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 6555543322222222222 256777777743 4578888877643
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.42 E-value=0.026 Score=51.51 Aligned_cols=213 Identities=15% Similarity=0.097 Sum_probs=103.5
Q ss_pred EEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeC----CC-------cEEEEecCCCceeeE--
Q 010324 278 MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF----DS-------TARIHGLKSGKLLKE-- 344 (513)
Q Consensus 278 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~-- 344 (513)
.++.|+. .+..||..+++-...-...........+...++..++.|+. ++ .+..||..+.+-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444442 47889988776433111011111222333457778888873 12 177888876654322
Q ss_pred ecccccceeEEEEccCCCEEEEEeCC-------CcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEc
Q 010324 345 FRGHSSYVNDAIFTNDGSRVVTASSD-------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN 417 (513)
Q Consensus 345 ~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 417 (513)
+....... +++. -+++.++.|+.+ ..+.+||..+.+-...-..+..... .+++. . +..+++.|+
T Consensus 96 ~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-----~~~~~-~-~~~iyv~GG 166 (318)
T 2woz_A 96 LPSARCLF-GLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-----HNVIS-H-NGMIYCLGG 166 (318)
T ss_dssp BSSCBCSC-EEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-----CEEEE-E-TTEEEEECC
T ss_pred CCcccccc-ceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-----cEEEE-E-CCEEEEEcC
Confidence 11111111 2222 256677777753 2478889887653322111111111 12222 1 325666665
Q ss_pred C------CCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC-----ceEEEEECCCceeeEe--eeccc
Q 010324 418 K------TSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-----RNLYCFSHQSGKLEHL--MKVHE 484 (513)
Q Consensus 418 ~------~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~--~~~h~ 484 (513)
. ...+.+||.....................+. -+++.++.|+.+ ..+.+||..+.+-... +....
T Consensus 167 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 244 (318)
T 2woz_A 167 KTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQER 244 (318)
T ss_dssp EESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCC
T ss_pred CCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence 3 2458999998665555543322222222222 256777777643 3578899887653322 22111
Q ss_pred CCeEEEEEcCCCCEEEEEECC
Q 010324 485 KDVIGVTHHPHRNLLATYGED 505 (513)
Q Consensus 485 ~~v~~~~~~p~~~~l~s~~~d 505 (513)
.....+.+ ++.+++.||.+
T Consensus 245 ~~~~~~~~--~~~i~v~GG~~ 263 (318)
T 2woz_A 245 SSISLVSL--AGSLYAIGGFA 263 (318)
T ss_dssp BSCEEEEE--TTEEEEECCBC
T ss_pred cceEEEEE--CCEEEEECCee
Confidence 12222322 56777777754
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.35 E-value=0.08 Score=47.72 Aligned_cols=178 Identities=8% Similarity=0.061 Sum_probs=104.6
Q ss_pred EEEcCCCCEEEEEeCC--------------CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEee----CCCcE
Q 010324 270 IEFSRDSEMLASGSQD--------------GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS----FDSTA 331 (513)
Q Consensus 270 l~~~~~~~~l~s~~~d--------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i 331 (513)
--++++|.+|+.+... ..|+..++..++. ..+. ... +..|+++++.|+... .+..|
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l~---~~~--~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVLD---PDP--CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEEE---CSC--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEee---cCC--ccEEEEeCCEEEEEeecCCCCceE
Confidence 3457889988887653 3577777766543 2222 111 236778899988776 34456
Q ss_pred EEEecCCCceeeEecccccceeEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCC
Q 010324 332 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP 410 (513)
Q Consensus 332 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 410 (513)
+..++. |.....+..+.. ..++++++.|.-.+. ...|..-++..+.....+. + ... ..+.|.+.
T Consensus 132 y~~~~d-Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~------~---~~~-~~~~P~g~ 196 (302)
T 3s25_A 132 YRIRID-GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD------C---NCY-KPVVLDDT 196 (302)
T ss_dssp EEEETT-SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC------S---CEE-EEEEEETT
T ss_pred EEEECC-CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC------C---Ccc-ceeeecCC
Confidence 666764 333444443322 346777888776655 5778888887655433322 1 111 23457774
Q ss_pred CeEEEEcCC-CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEe--cCceEEEEECCCce
Q 010324 411 DHIVVCNKT-SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG--EDRNLYCFSHQSGK 475 (513)
Q Consensus 411 ~~l~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--~dg~i~iwd~~~~~ 475 (513)
.++.+...+ ..|...++++.....+... .+ ..++|+++.|+.++ ..+.|..-++....
T Consensus 197 ~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~-----~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 197 NVYYMDVNRDNAIVHVNINNPNPVVLTEA-----NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EEEEEEGGGTTEEEEECSSSCCCEECSCS-----CE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred EEEEEEcCCCcEEEEEECCCCCeEEEeCC-----Cc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 444444333 4677888887665555432 12 34788899888764 34677777775443
No 332
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.33 E-value=0.017 Score=53.65 Aligned_cols=151 Identities=17% Similarity=0.250 Sum_probs=98.1
Q ss_pred ccCCCEEEEeeCCCcEEEEecCCCceeeEeccc----ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCce--------
Q 010324 316 SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH----SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDC-------- 383 (513)
Q Consensus 316 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------- 383 (513)
..+|..++++- ++.|+..++..+..-+.+... -..|..+..+|+|++|+..+. ..|.|-.+..+..
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 34566666655 577787777644433333332 225888999999999988865 5688888873321
Q ss_pred ----eEeecCCCCCCCCCceeeEEEecCCCC--CeEEEEcCCCcEEEEEccC---eEEEEee------cCccCCCcEEEE
Q 010324 384 ----LQTFKPPPPLRGGDASVNSVHLFPKNP--DHIVVCNKTSSIYIMTLQG---QVVKSFS------SGKREGGDFVAA 448 (513)
Q Consensus 384 ----~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~~~~i~i~d~~~---~~~~~~~------~~~~~~~~~~~~ 448 (513)
.+++...........+|..+.|+|.+. ..+++-..|+.|++||+.. ... .+. ........+.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 112221111112357899999999763 5899999999999999973 222 221 111122568899
Q ss_pred EECCCCCEEEEEe--cCceEEEE
Q 010324 449 CVSPKGEWIYCVG--EDRNLYCF 469 (513)
Q Consensus 449 ~~s~~~~~l~~g~--~dg~i~iw 469 (513)
||++++-.|++.+ ..|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9999888787755 88988865
No 333
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.21 E-value=0.018 Score=53.64 Aligned_cols=150 Identities=12% Similarity=0.189 Sum_probs=96.6
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCcceeeeccccc---ccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCc--------
Q 010324 272 FSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAH---SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK-------- 340 (513)
Q Consensus 272 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------- 340 (513)
.+.+|..++.+- ++.||.-++..+..-+.+...+ -..|..+..+|+|++||..+ +..|.|..+..+.
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 344666666664 5788888877544344443221 23678899999999999886 5678888776321
Q ss_pred ----eeeEecc------cccceeEEEEcc---CCCEEEEEeCCCcEEEEeCCCCc--eeEeecCCCC---CCCCCceeeE
Q 010324 341 ----LLKEFRG------HSSYVNDAIFTN---DGSRVVTASSDCTVKVWDLKSTD--CLQTFKPPPP---LRGGDASVNS 402 (513)
Q Consensus 341 ----~~~~~~~------~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~---~~~~~~~v~~ 402 (513)
..+.+.- ...+|..+.|+| .+..|++-..|+.|++||+.... +. .+..... .......+.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 1112221 246799999999 45689999999999999998632 22 2322111 1122356889
Q ss_pred EEecCCCCCeEEEE--cCCCcEEEE
Q 010324 403 VHLFPKNPDHIVVC--NKTSSIYIM 425 (513)
Q Consensus 403 ~~~~~~~~~~l~~~--~~~~~i~i~ 425 (513)
++|.+++ -.+.+. +..|.|+-.
T Consensus 185 ~~Fg~~~-lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDG-LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTS-SCEEEEECTTSCEEEEE
T ss_pred EEEcCCC-cEEEEEecCCCCCEEEE
Confidence 9998854 555553 477887654
No 334
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.15 E-value=0.018 Score=48.32 Aligned_cols=142 Identities=11% Similarity=0.032 Sum_probs=80.5
Q ss_pred CceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCcc--------EEEEEEcCCCCEEEEEeCC
Q 010324 214 SHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDET--------VLCIEFSRDSEMLASGSQD 285 (513)
Q Consensus 214 ~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~--------v~~l~~~~~~~~l~s~~~d 285 (513)
..+.+++|+|+|.+.++ .+|.+ +-.+..++... .+.+.... ..++.|.|+|.+.++ .|
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~L-y~~~~~t~~~~---------~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~d 106 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKI-YKGTPPTHDND---------NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SK 106 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEE-EEESCCCSTTC---------CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ET
T ss_pred ccceeEEECCCccEEEE--eCCeE-EEECCCCCCcc---------cccccccEecccccccceEEEECCCCCEEEe--CC
Confidence 47889999999997777 67765 24443332111 11111222 378999999987777 56
Q ss_pred CcEEEEEcCCcceeee------cccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCce------eeEec-ccccce
Q 010324 286 GKIKVWRIRSGQCLRR------LERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL------LKEFR-GHSSYV 352 (513)
Q Consensus 286 g~i~vwd~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~-~~~~~v 352 (513)
|.|.-++-.+.....- +....-..+..+.|.|+|.+.++. |+.++-+...++.. ...+- ..-..-
T Consensus 107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~y 184 (236)
T 1tl2_A 107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTF 184 (236)
T ss_dssp TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGE
T ss_pred CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceE
Confidence 9888777533221111 111122567999999999776666 77765443322210 11111 122234
Q ss_pred eEEEEccCCCEEEEEeCCCcE
Q 010324 353 NDAIFTNDGSRVVTASSDCTV 373 (513)
Q Consensus 353 ~~~~~~~~~~~l~~~~~dg~i 373 (513)
..+.|.+++...++. +|.+
T Consensus 185 r~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 185 KFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEEEECTTSCEEEEE--TTEE
T ss_pred EEEEECCCCcEEEEe--CCeE
Confidence 446688888766655 6633
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.033 Score=50.85 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=80.1
Q ss_pred CEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEE---EcCCCCEEEEE-eCCCcEEEEEcCCcceeee
Q 010324 226 QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIE---FSRDSEMLASG-SQDGKIKVWRIRSGQCLRR 301 (513)
Q Consensus 226 ~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~---~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~ 301 (513)
..+++++.||.+. -.|..+|+....+.... ..++.... ...++..++.. +.||.+..++..+|.....
T Consensus 11 ~~V~v~t~dG~l~-Ald~~tG~~~W~~~~~~-------~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~ 82 (339)
T 2be1_A 11 DILIAADVEGGLH-AVDRRNGHIIWSIEPEN-------FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLP 82 (339)
T ss_dssp EEEEEEETTSCEE-EEETTTTEEEEEECGGG-------SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEE
T ss_pred CEEEEEeCCCeEE-EEECCCCcEEEEecCCc-------cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEee
Confidence 3677777788773 77777777766554320 01111100 00123333333 5799999999888865443
Q ss_pred cccc---cccCeEE---EEE-----ccCCCEEEEeeCCCcEEEEecCCCceeeEecccc--cc-----eeEEEEc-----
Q 010324 302 LERA---HSEGVTS---LVF-----SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHS--SY-----VNDAIFT----- 358 (513)
Q Consensus 302 ~~~~---~~~~v~~---~~~-----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~-----v~~~~~~----- 358 (513)
+... ..+++.. ... ...+..+++|+.+|.+...|+++|+.+..+.... +. ..|....
T Consensus 83 ~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d 162 (339)
T 2be1_A 83 LSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQ 162 (339)
T ss_dssp EEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------------
T ss_pred eccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccc
Confidence 3311 1122221 000 0145688999999999999999999998886432 11 1111111
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC
Q 010324 359 NDGSRVVTASSDCTVKVWDLKST 381 (513)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~~ 381 (513)
..+..++.+..+..+.+.+ ++|
T Consensus 163 ~~~~~v~ig~~~y~v~~~~-~sG 184 (339)
T 2be1_A 163 ECENMIVIGKTIFELGIHS-YDG 184 (339)
T ss_dssp --CCEEEEEEEEEECEECC-TTS
T ss_pred cCCCeEEEecceEEEEEEC-CCC
Confidence 1235677777777677666 444
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.11 E-value=0.062 Score=49.28 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=86.5
Q ss_pred cccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCC---CCCeEEEE-c--CCCc
Q 010324 348 HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK---NPDHIVVC-N--KTSS 421 (513)
Q Consensus 348 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~-~--~~~~ 421 (513)
.-.....++|.|+|..+++--..|.|++++...+........+............++++|+ + ..++++ + .++.
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~-g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASD-HMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHH-CEEEEEEECSSSEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccC-CEEEEEEecCCCCE
Confidence 3445789999999987766655899999987665542221122222344567889999995 3 344433 2 3456
Q ss_pred EEEEEccC---------eEEEEeec-CccCCCcEEEEEECCCCCEEEEEec-------------CceEEEEECCCce---
Q 010324 422 IYIMTLQG---------QVVKSFSS-GKREGGDFVAACVSPKGEWIYCVGE-------------DRNLYCFSHQSGK--- 475 (513)
Q Consensus 422 i~i~d~~~---------~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~-------------dg~i~iwd~~~~~--- 475 (513)
|.-+.+.+ .....+.. ..........+.|.|||.+.++.+. .|.|.-.+....-
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 66666553 11111111 1111123457999999986666442 3566666654220
Q ss_pred ----eeEee-ecccCCeEEEEEcCCCCEEEEE
Q 010324 476 ----LEHLM-KVHEKDVIGVTHHPHRNLLATY 502 (513)
Q Consensus 476 ----~~~~~-~~h~~~v~~~~~~p~~~~l~s~ 502 (513)
....+ .+|. ....++|+|++.++++=
T Consensus 189 nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 189 NPFPGSPVYSYGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp CSSTTCCEEEBCCS-BCCEEEECTTCCEEEEE
T ss_pred CCCCCCeEEeeCCC-CcceEEECCCCCEEEEe
Confidence 01112 2443 45689999987766543
No 337
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.07 E-value=0.37 Score=49.91 Aligned_cols=267 Identities=13% Similarity=0.161 Sum_probs=153.4
Q ss_pred cCceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010324 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 292 (513)
Q Consensus 213 ~~~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd 292 (513)
...|.|+.-..+|. |-.|+.+|.. .||-..-+... .. .. .....|.++.-..+| .|..|+.+| +..||
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~GL~--ryDG~~~~~~~---~~--~~--~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd 88 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKGLF--SYDGYSTQQHF---TY--GE--NNNTRIYCGVIIDNT-YLYMGTDNG-ILVYN 88 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSCEE--EECSSCEEECS---CT--TS--TTSSCEEEEEEETTT-EEEEEETTE-EEEEE
T ss_pred cceEEEEEECCCCC-EEEEECCCcc--ccCCCceEEEE---cc--CC--CCCceEEEEEEcCCC-cEEEEeCCC-eEEEe
Confidence 45799999988885 4456678855 56632211110 00 00 134579998877766 566677665 78999
Q ss_pred cCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEec-----ccccceeEEEEccCCCEEEEE
Q 010324 293 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR-----GHSSYVNDAIFTNDGSRVVTA 367 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~ 367 (513)
..+.+...... .....|.++.. .+| .|..++.+ -+..+|..+++.. .+. .....|.++....+|...+ +
T Consensus 89 ~~~~~f~~~~~-~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-g 162 (758)
T 3ott_A 89 YRADRYEQPET-DFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-G 162 (758)
T ss_dssp TTTTEECCCSC-CCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-E
T ss_pred CCCCEEECccc-CCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-E
Confidence 87765332111 12345777654 355 56667765 6788898765543 221 1234588888887776544 5
Q ss_pred eCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEE
Q 010324 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVA 447 (513)
Q Consensus 368 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 447 (513)
+.+| +..+|..++... .+..+.........|.++...+.+ ..+.+++. +-+..++........+... ....+.+
T Consensus 163 t~~G-l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~~~~~~~l--~~~~i~~ 236 (758)
T 3ott_A 163 TYNG-LCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQIKQTEAF--HNNSIKS 236 (758)
T ss_dssp ETTE-EEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTTTEEEEEEEE--EEEEEEE
T ss_pred eCCC-HhhCccCCCceE-EecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCeEEeccCC--CCCeEEE
Confidence 5544 888888765532 222211111112347777766554 44555554 4578888775444333221 1234778
Q ss_pred EEECCCCCEEEEEecCceEEEEECCCceeeEeee-------cccCCeEEEEEcCCCCEEEEEECCC
Q 010324 448 ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK-------VHEKDVIGVTHHPHRNLLATYGEDC 506 (513)
Q Consensus 448 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~p~~~~l~s~~~dg 506 (513)
++...+|.+.+ |+. +-+.+++..+++...... -....|.++....+|.+.+ |+..|
T Consensus 237 i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G 299 (758)
T 3ott_A 237 LALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG 299 (758)
T ss_dssp EEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS
T ss_pred EEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc
Confidence 88888877554 454 468889887765432211 1234588888877776554 44456
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.05 E-value=0.17 Score=46.90 Aligned_cols=58 Identities=9% Similarity=-0.039 Sum_probs=30.1
Q ss_pred cEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc------eEEEEECCCceeeEee
Q 010324 421 SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR------NLYCFSHQSGKLEHLM 480 (513)
Q Consensus 421 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg------~i~iwd~~~~~~~~~~ 480 (513)
.+.+||+.......+......... ..+...+++.++.|+.++ .|.++++++++.+...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 577888875444333322221221 122334677888888542 4667788887766543
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.04 E-value=0.15 Score=46.32 Aligned_cols=194 Identities=9% Similarity=0.036 Sum_probs=95.8
Q ss_pred cCCCCEEEEEeC----CC-------cEEEEEcCCcceeeeccccc-ccCeEEEEEccCCCEEEEeeCC-------CcEEE
Q 010324 273 SRDSEMLASGSQ----DG-------KIKVWRIRSGQCLRRLERAH-SEGVTSLVFSRDGSQILSTSFD-------STARI 333 (513)
Q Consensus 273 ~~~~~~l~s~~~----dg-------~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-------g~i~i 333 (513)
..++..++.|+. ++ .+.+||..+++-...-.... ......+.+ ++..++.|+.+ ..+.+
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence 456777888873 12 17788877655322211011 111222222 56677777754 25788
Q ss_pred EecCCCceeeEecccccceeEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecC
Q 010324 334 HGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS------DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP 407 (513)
Q Consensus 334 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (513)
||+.+.+-...-..........+...+++.++.|+. -..+.+||+.+.+-...-..+.. ... .+++..
T Consensus 132 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r~~-~~~~~~- 205 (318)
T 2woz_A 132 YDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP----RSM-FGVAIH- 205 (318)
T ss_dssp EETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSC----CBS-CEEEEE-
T ss_pred EeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCC----ccc-ceEEEE-
Confidence 898776543221111111111122245666666653 23589999987653322111111 111 122222
Q ss_pred CCCCeEEEEcCC-----CcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC--------------ceEEE
Q 010324 408 KNPDHIVVCNKT-----SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED--------------RNLYC 468 (513)
Q Consensus 408 ~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--------------g~i~i 468 (513)
+..+++.|+.+ ..+.+||........+.......... +++ ..+++.++.|+.+ ..+.+
T Consensus 206 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~ 282 (318)
T 2woz_A 206 -KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWK 282 (318)
T ss_dssp -TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEE
T ss_pred -CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEE
Confidence 22666666543 35778888765555444322222111 222 2356677777643 35888
Q ss_pred EECCCceee
Q 010324 469 FSHQSGKLE 477 (513)
Q Consensus 469 wd~~~~~~~ 477 (513)
||..+.+-.
T Consensus 283 yd~~~~~W~ 291 (318)
T 2woz_A 283 YEDDKKEWA 291 (318)
T ss_dssp EETTTTEEE
T ss_pred EeCCCCEeh
Confidence 888876543
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.03 E-value=0.13 Score=46.22 Aligned_cols=197 Identities=8% Similarity=0.036 Sum_probs=109.1
Q ss_pred cCCCCEEEEEeC--CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCC--------------CcEEEEec
Q 010324 273 SRDSEMLASGSQ--DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD--------------STARIHGL 336 (513)
Q Consensus 273 ~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~i~d~ 336 (513)
++++.+++.... ++.|...+.. |.....+.. .. +--++++|.+|+.+... ..|+..++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~---~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSN---DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEE---EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccC---Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 346777776642 4566666643 433444431 11 34557889988877543 35777777
Q ss_pred CCCceeeEecccccceeEEEEccCCCEEEEEe----CCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCe
Q 010324 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS----SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH 412 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (513)
..++.. .+... .+..|++++++|+-.. .+..|..-++.... ...+.... + ..+.+.+..+
T Consensus 96 dg~~~~-~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~--------~--~~~~~~g~~i 159 (302)
T 3s25_A 96 NGHGST-VLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHY--------L--FTCNTSDRYF 159 (302)
T ss_dssp TSCCCE-EEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSC--------C--CCSEEETTEE
T ss_pred CCCcce-EeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCC--------c--eEeeEECCEE
Confidence 655432 22211 1236788888888776 33456666665433 22332111 1 2345566455
Q ss_pred EEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCCCCEEEEEecC--ceEEEEECCCceeeEeeecccCCeEEE
Q 010324 413 IVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED--RNLYCFSHQSGKLEHLMKVHEKDVIGV 490 (513)
Q Consensus 413 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~~ 490 (513)
..+......|+..++.+...+.+.... .. ..++|++.+|+..... ..|..-++..+.... +. ...+ .
T Consensus 160 y~t~~g~~~Iy~~~l~g~~~~~l~~~~-----~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt--~~~~--~ 228 (302)
T 3s25_A 160 YYNNPKNGQLYRYDTASQSEALFYDCN-----CY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVV-LT--EANI--E 228 (302)
T ss_dssp EEECTTTCCEEEEETTTTEEEEEECSC-----EE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEE-CS--CSCE--E
T ss_pred EEEeCCCceEEEEECCCCCEEEEeCCC-----cc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEE-Ee--CCCc--c
Confidence 555555788999999876655554321 22 2356999999877644 367777776554332 22 1222 2
Q ss_pred EEcCCCCEEEEE
Q 010324 491 THHPHRNLLATY 502 (513)
Q Consensus 491 ~~~p~~~~l~s~ 502 (513)
.|+|++..|.-+
T Consensus 229 ~~~~~g~~Iy~~ 240 (302)
T 3s25_A 229 HYNVYGSLIFYQ 240 (302)
T ss_dssp EEEEETTEEEEE
T ss_pred eEEECCCEEEEE
Confidence 255555555443
No 341
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.03 E-value=0.17 Score=45.31 Aligned_cols=239 Identities=10% Similarity=0.122 Sum_probs=136.7
Q ss_pred EEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCc-
Q 010324 218 CARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG- 296 (513)
Q Consensus 218 ~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~- 296 (513)
+.-.+|..+.+|.-. ...+. ++|+++....+... ....|.-=.|-.+. .|+-.+ +..|+-|++...
T Consensus 71 sAIMnP~~~ViALra-g~~LQ-iFnletK~klks~~---------~~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s 137 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQ-IFNIEMKSKMKAHT---------MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGES 137 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEE-EEETTTTEEEEEEE---------CSSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTC
T ss_pred eeeeCCCccEEEEec-CCeEE-EechHHhhhhccee---------cCCccEEEEecCCC-eEEEEc-CCcEEEEcccCCC
Confidence 355688888888776 67887 99999887666544 34677777887554 455554 558999999753
Q ss_pred ceeeecccc---cccCeEEEEEccCCCEEEEeeC-------CCcEEEEecCCCceeeEecccccceeEEEEcc--CC-CE
Q 010324 297 QCLRRLERA---HSEGVTSLVFSRDGSQILSTSF-------DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN--DG-SR 363 (513)
Q Consensus 297 ~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~-~~ 363 (513)
.+.+.+.+. ....|..-..+++.+.++..+- .|.+.+|.. +.+..+.+.+|......+.... .. +.
T Consensus 138 ~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~-er~~sQ~ieGhaa~F~~~~~~g~~~~~~l 216 (365)
T 2xzh_A 138 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV-DRKVSQPIEGHAASFAQFKMEGNAEESTL 216 (365)
T ss_dssp CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET-TTTEEEEECCSEEEEEEECCTTCSSCEEE
T ss_pred CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEee-cccccceeeeeeeeeEEEecCCCCCCceE
Confidence 344444321 1356777778888887765432 367889987 4555666777765443333221 11 12
Q ss_pred EEEEeC---CCcEEEEeCCCC---cee---EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEE
Q 010324 364 VVTASS---DCTVKVWDLKST---DCL---QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVK 433 (513)
Q Consensus 364 l~~~~~---dg~i~iwd~~~~---~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~ 433 (513)
++.+.. .+.+++-++... ... +......+......-..++..++.. ..++.-+.-|.+++||+.. ..+-
T Consensus 217 f~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ky-gviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 217 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccC-CEEEEEeCCcEEEEEEcccCcEEE
Confidence 333322 257888888542 100 0001011111233444566666665 7899999999999999983 3332
Q ss_pred EeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc
Q 010324 434 SFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG 474 (513)
Q Consensus 434 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 474 (513)
.-... ...+...+.+....=+++....|.|.--.++..
T Consensus 296 ~nrIS---~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 296 MNRIS---GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEECC---SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EeccC---CCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 22221 222333333333333444445555555544443
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.01 E-value=0.038 Score=51.35 Aligned_cols=222 Identities=11% Similarity=0.072 Sum_probs=104.5
Q ss_pred CCCEEEEEeC-CCcEEEEEcCC--cc--eeeecccccccCeEEEEEccCCCEEEEeeC-C---------CcEEEEecCCC
Q 010324 275 DSEMLASGSQ-DGKIKVWRIRS--GQ--CLRRLERAHSEGVTSLVFSRDGSQILSTSF-D---------STARIHGLKSG 339 (513)
Q Consensus 275 ~~~~l~s~~~-dg~i~vwd~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~i~d~~~~ 339 (513)
++..++.|+. ...+.++|..+ .+ .+..+..........+.+ ++..++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5556666654 34688888763 22 121111001111222222 5667777765 2 46889998776
Q ss_pred ceeeEeccc-ccceeEEEEccCCCEEEEEeCC---------------------------------------CcEEEEeCC
Q 010324 340 KLLKEFRGH-SSYVNDAIFTNDGSRVVTASSD---------------------------------------CTVKVWDLK 379 (513)
Q Consensus 340 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---------------------------------------g~i~iwd~~ 379 (513)
+-...-... .......+...+++.++.|+.+ ..+.+||+.
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 533221111 1112222222567777888754 468999988
Q ss_pred CCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcC------CCcEEEEEc--cCeEEEEeecCccCCCcEEEEEEC
Q 010324 380 STDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK------TSSIYIMTL--QGQVVKSFSSGKREGGDFVAACVS 451 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------~~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~s 451 (513)
+.+-...-..+..... -.+++.. +..+++.|+. ...+..+|+ .....................+..
T Consensus 177 ~~~W~~~~~~p~~~~~----~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTA----GAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGI 250 (357)
T ss_dssp TTEEEEEEECSSCCCB----SCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEE
T ss_pred CCcEEECCCCCCCCcc----cccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEE
Confidence 7643322111111011 0122222 2256666553 345777877 444444433322111111112233
Q ss_pred CCCCEEEEEecC----------------------ceEEEEECCCcee--eEeeecccCCeEEEEEcCCCCEEEEEECCC
Q 010324 452 PKGEWIYCVGED----------------------RNLYCFSHQSGKL--EHLMKVHEKDVIGVTHHPHRNLLATYGEDC 506 (513)
Q Consensus 452 ~~~~~l~~g~~d----------------------g~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg 506 (513)
.+++.++.|+.+ ..+.+||..+.+- +..+......-.++. .++.+++.||.++
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETA 327 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECG
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCC
Confidence 456777777632 2578899876543 222322222222333 3677888888553
No 343
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.99 E-value=0.24 Score=46.30 Aligned_cols=240 Identities=10% Similarity=0.124 Sum_probs=141.1
Q ss_pred EEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCc-
Q 010324 218 CARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG- 296 (513)
Q Consensus 218 ~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~- 296 (513)
+.-.+|..+.+|.=. ..++. |+|+++....+.... ...|.-=.|-.+. .|+..+ +..|+-|++...
T Consensus 70 sAIMnP~~~iiALra-g~~lQ-iFnle~K~klks~~~---------~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s 136 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQ-IFNIEMKSKMKAHTM---------TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGES 136 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEE-EEETTTTEEEEEEEC---------SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSC
T ss_pred eeeeCCCCcEEEEec-CCeEE-EEchHHhhhhcceec---------CCCceEEEecCCC-eEEEEc-CCeeEEecccCCC
Confidence 456788888888765 67887 999998776655442 3456666676443 455554 568999999753
Q ss_pred ceeeecccc---cccCeEEEEEccCCCEEEEee-------CCCcEEEEecCCCceeeEecccccceeEEEEccCC---CE
Q 010324 297 QCLRRLERA---HSEGVTSLVFSRDGSQILSTS-------FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG---SR 363 (513)
Q Consensus 297 ~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~ 363 (513)
.+.+.+.+. ....|..-..+++.++++..+ -.|.+.+|..+ .+..+.+.+|......+....+. +.
T Consensus 137 ~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~l 215 (494)
T 1bpo_A 137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTL 215 (494)
T ss_dssp CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-TCCEEEECCSEEEEEEEECTTCSSEEEE
T ss_pred CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc-ccccchheeeeeeeEEEecCCCCCCceE
Confidence 344444321 135677777888888877443 23678899874 44556677776655444332211 23
Q ss_pred EEEEeC---CCcEEEEeCCCC---ce---eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-eEEE
Q 010324 364 VVTASS---DCTVKVWDLKST---DC---LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVK 433 (513)
Q Consensus 364 l~~~~~---dg~i~iwd~~~~---~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~ 433 (513)
+..+.. .+.++|-++... .. .+......+......-..++..++.. ..++.-+.-|.+++||+.. ..+-
T Consensus 216 f~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp EEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccceeee
Confidence 333333 278999988543 10 01111111112334445567777766 7899999999999999984 3332
Q ss_pred EeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce
Q 010324 434 SFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK 475 (513)
Q Consensus 434 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 475 (513)
.-.. ....+...+.+....=+++....|.|.--.+....
T Consensus 295 ~nrI---s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 295 MNRI---SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEC---CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred eecc---cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 2222 12334444444444445555566666665555443
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.91 E-value=0.13 Score=43.26 Aligned_cols=97 Identities=11% Similarity=-0.031 Sum_probs=56.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCcc------eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccc
Q 010324 276 SEMLASGSQDGKIKVWRIRSGQ------CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHS 349 (513)
Q Consensus 276 ~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 349 (513)
...|+....| +++.=...++. ...++-.+.=..+..++|+|+|.+.++ .+|.++-.+..+.....-+. ..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~-s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMG-RA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHH-HC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccc-cc
Confidence 3456666666 55544443333 112222111246779999999986666 67877777765422211111 11
Q ss_pred cc--------eeEEEEccCCCEEEEEeCCCcEEEEeC
Q 010324 350 SY--------VNDAIFTNDGSRVVTASSDCTVKVWDL 378 (513)
Q Consensus 350 ~~--------v~~~~~~~~~~~l~~~~~dg~i~iwd~ 378 (513)
.. ..++.|.|+|.+.++ .||.|+-++.
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred cEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 12 478899999987777 5588887764
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.88 E-value=0.19 Score=48.25 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=63.3
Q ss_pred cceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCC--CCCCceeeEEEecCC---CCCeEEEEcC------
Q 010324 350 SYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPL--RGGDASVNSVHLFPK---NPDHIVVCNK------ 418 (513)
Q Consensus 350 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~---~~~~l~~~~~------ 418 (513)
.....++|.|+|+.+++-...+.|++++..++............ .........++++|+ +..+.++.+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999986666544457998887655432222211111 123456789999996 5344444432
Q ss_pred ------CCcEEEEEccC---e--EEEEeec--CccCCCcEEEEEECCCCCEEEEEe
Q 010324 419 ------TSSIYIMTLQG---Q--VVKSFSS--GKREGGDFVAACVSPKGEWIYCVG 461 (513)
Q Consensus 419 ------~~~i~i~d~~~---~--~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~g~ 461 (513)
...|.-++... . ..+.+.. ..........++|.|||.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 23566666542 1 1111111 111123467899999998777655
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.65 E-value=0.1 Score=53.37 Aligned_cols=203 Identities=9% Similarity=0.041 Sum_probs=103.8
Q ss_pred CCCCEEEEEeCC----CcEEEEEcCCcceeeec-c-----cccccCeEEEEEcc-CCCEEEEeeCC------CcEEEEec
Q 010324 274 RDSEMLASGSQD----GKIKVWRIRSGQCLRRL-E-----RAHSEGVTSLVFSR-DGSQILSTSFD------STARIHGL 336 (513)
Q Consensus 274 ~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~-~-----~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i~d~ 336 (513)
.++..++.|+.+ ..+.+||..+++-...- . ......-.+++..+ ++..++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 46888998876533221 1 01111122333333 67777887754 35788998
Q ss_pred CCCceeeEecccccce-eEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeE
Q 010324 337 KSGKLLKEFRGHSSYV-NDAIFTNDGSRVVTASSDC--TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 413 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 413 (513)
.+.+-...-....... .+++...+++.++.|+.++ .+.+||..+..-... ...............+.+......++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~-~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDV-TPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEEC-CCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEc-cCCCCCCCcccceeEEEEeCCCCEEE
Confidence 7754332211111111 2223324778888887654 689999987642221 11000000111122244444433567
Q ss_pred EEEcC-------CCcEEEEEccCeE------EEEeecCccCCCcEEEEEECCCCCEEEEEec--------CceEEEEECC
Q 010324 414 VVCNK-------TSSIYIMTLQGQV------VKSFSSGKREGGDFVAACVSPKGEWIYCVGE--------DRNLYCFSHQ 472 (513)
Q Consensus 414 ~~~~~-------~~~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--------dg~i~iwd~~ 472 (513)
+.|+. ...+..||+.... ...+.........-.+++...+++.++.|+. ...+.+||..
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 77665 2458899987544 3333221111111112333333777777774 3469999998
Q ss_pred Cceee
Q 010324 473 SGKLE 477 (513)
Q Consensus 473 ~~~~~ 477 (513)
+.+-.
T Consensus 635 t~~W~ 639 (695)
T 2zwa_A 635 SETLT 639 (695)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 87543
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.46 E-value=0.7 Score=44.66 Aligned_cols=273 Identities=8% Similarity=0.076 Sum_probs=149.9
Q ss_pred EEEEecCCeEEEEEecccccccccccccccc-------------cccc----CCccE--EEEEEcC---CCCEEEEEeC-
Q 010324 228 LVSCSFDGFIEVVWDYLSGKLKKDLQYQADE-------------TFMM----HDETV--LCIEFSR---DSEMLASGSQ- 284 (513)
Q Consensus 228 la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~-------------~~~~----h~~~v--~~l~~~~---~~~~l~s~~~- 284 (513)
+.+|+..|.++ |+-+-+++.+..+..-... .+.. ..+.. ..+++.. ||++|+.-..
T Consensus 73 f~SgG~sG~v~-v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 73 FWSGGHQGEVR-VLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEECGGGCCEE-EEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EeecCcCceEE-EEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 55677778886 7777777665544321110 1100 00111 1233332 6788888764
Q ss_pred CCcEEEEEcCCcceeeecccccccCeEEEEEc--cCCCEEEEeeC-------CCcE---------EE---EecCCCceee
Q 010324 285 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS--RDGSQILSTSF-------DSTA---------RI---HGLKSGKLLK 343 (513)
Q Consensus 285 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~-------dg~i---------~i---~d~~~~~~~~ 343 (513)
+..|-..++..-++-+.+.......+..++|- |+..++++++. ||.. .+ .|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 56788888888877666665677889999997 68888888764 2321 11 1222222222
Q ss_pred EecccccceeEEEEccCCCEEEEEeCCC---------------cEEEEeCC-------CCce-------eEeecCCCC--
Q 010324 344 EFRGHSSYVNDAIFTNDGSRVVTASSDC---------------TVKVWDLK-------STDC-------LQTFKPPPP-- 392 (513)
Q Consensus 344 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~-------~~~~-------~~~~~~~~~-- 392 (513)
++.- .+........++|.+.++.+.+. .+.++|+. .|+. +..+.....
T Consensus 232 Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 232 QVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 2111 12233455567788877766431 35555542 1110 001100000
Q ss_pred -CC------CCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-------eE---EEEeecCccCCCcEEEEEECCCCC
Q 010324 393 -LR------GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-------QV---VKSFSSGKREGGDFVAACVSPKGE 455 (513)
Q Consensus 393 -~~------~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-------~~---~~~~~~~~~~~~~~~~~~~s~~~~ 455 (513)
.. ........+..+|++...++.+--+.++.++|++. +. ..........+-.....+|.++|.
T Consensus 311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~ 390 (638)
T 3sbq_A 311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN 390 (638)
T ss_dssp BCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred cCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc
Confidence 00 01134556788899966677777789999999872 11 000111112344577889999994
Q ss_pred EEEEEecCceEEEEECCCc----------eeeEeeecccCCeEEEEE------cCCCCEEEEEE
Q 010324 456 WIYCVGEDRNLYCFSHQSG----------KLEHLMKVHEKDVIGVTH------HPHRNLLATYG 503 (513)
Q Consensus 456 ~l~~g~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~------~p~~~~l~s~~ 503 (513)
...+---|..|.-|++... ..+..+..|-.+- .+.- .|+|++|++..
T Consensus 391 aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 391 AYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred eEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence 4444458999999999754 3455555554322 2222 45777777764
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.31 E-value=0.73 Score=43.23 Aligned_cols=223 Identities=9% Similarity=0.059 Sum_probs=108.8
Q ss_pred ccEEEEEEcC-C-CCEEEEEeCCCcEEEEEcCCcceeeeccc------------------ccccCeEEEEEcc-CCCEEE
Q 010324 265 ETVLCIEFSR-D-SEMLASGSQDGKIKVWRIRSGQCLRRLER------------------AHSEGVTSLVFSR-DGSQIL 323 (513)
Q Consensus 265 ~~v~~l~~~~-~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------------------~~~~~v~~~~~~~-~~~~l~ 323 (513)
..|.++++.| + ...+..++..+.|...+ ..|+.-..+.. .....+.++.+.| +...++
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 3688899987 2 45666666566554443 22332222210 0123578999988 345566
Q ss_pred EeeCCCcEEEEecCCCceeeEecc-c------------ccceeEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeEeecC
Q 010324 324 STSFDSTARIHGLKSGKLLKEFRG-H------------SSYVNDAIFTND-GSRVVTASSDCTVKVWDLKSTDCLQTFKP 389 (513)
Q Consensus 324 ~~~~dg~i~i~d~~~~~~~~~~~~-~------------~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 389 (513)
++..++.|...+ ..++.-..+.. . ...+.++.++|. ...+.+++..+ |...+ ..++.-..+..
T Consensus 194 vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~ 270 (394)
T 3b7f_A 194 IGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGD 270 (394)
T ss_dssp EEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGG
T ss_pred EEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCC
Confidence 665555444432 22332222211 0 124788999885 35666666554 54443 22332222221
Q ss_pred CCCCCCCCceeeEEEecCCCCCeEEEEcC-----------CCcEEEEEcc--CeEEEEeecCccCCC-----cEEEEEEC
Q 010324 390 PPPLRGGDASVNSVHLFPKNPDHIVVCNK-----------TSSIYIMTLQ--GQVVKSFSSGKREGG-----DFVAACVS 451 (513)
Q Consensus 390 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------~~~i~i~d~~--~~~~~~~~~~~~~~~-----~~~~~~~s 451 (513)
... ......+..+.+.|..+..++++.. ++...+|... +.....+........ ....++++
T Consensus 271 ~l~-~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~ 349 (394)
T 3b7f_A 271 AMP-REVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTAD 349 (394)
T ss_dssp GSC-TTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEEC
T ss_pred CCC-CCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEEC
Confidence 100 0001234678888766566666532 2333444443 344444332211111 11357777
Q ss_pred CC-CCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEc
Q 010324 452 PK-GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHH 493 (513)
Q Consensus 452 ~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 493 (513)
|. ...|++++.++.|+.-+ ..|+.-..+..+-..+.+++|.
T Consensus 350 p~~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 350 AHAPVGVYFGTTGGEIWASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp CSSSCCEEEECTTSCEEEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEC-CCCCCceEcccCCCCeeEEEEe
Confidence 74 35577777666665433 3343333343344567777764
No 349
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.24 E-value=0.44 Score=51.58 Aligned_cols=239 Identities=11% Similarity=0.138 Sum_probs=131.6
Q ss_pred EEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCc-c
Q 010324 219 ARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG-Q 297 (513)
Q Consensus 219 ~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~-~ 297 (513)
.-.+|..+.+|.=. ..++. |+|+.+....+... ...+|.-=.|-.+. .|+..+ +..|.-|++... .
T Consensus 71 AIMnP~~~iiALra-g~~lQ-iFnl~~k~klks~~---------~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~ 137 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQ-IFNIEMKSKMKAHT---------MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQ 137 (1630)
T ss_pred hccCCCcceEEEec-CCeEE-EeehHHhhhhcccc---------cCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCc
Confidence 45678888777765 67886 99998877665544 24567777776554 344443 458999999743 3
Q ss_pred eeeeccccc----ccCeEEEEEccCCCEEEEee-------CCCcEEEEecCCCceeeEecccccceeEEEEc--cCCCEE
Q 010324 298 CLRRLERAH----SEGVTSLVFSRDGSQILSTS-------FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT--NDGSRV 364 (513)
Q Consensus 298 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l 364 (513)
+++.+. .| ...|..-..+++.++++..+ -.|.+.+|... .+..+.+.+|.+....+... +....+
T Consensus 138 P~k~fd-R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r~~sQ~iegha~~F~~~~~~~~~~~~~l 215 (1630)
T 1xi4_A 138 PVKMFD-RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTL 215 (1630)
T ss_pred cHHHHh-cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc-cccchhhhHhHhhhheeccCCCCCCceE
Confidence 333333 23 45677777788888877443 34788999874 34445556665544333332 111223
Q ss_pred EE-EeC---CCcEEEEeCCCC-ceeEeec-----CCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEE
Q 010324 365 VT-ASS---DCTVKVWDLKST-DCLQTFK-----PPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKS 434 (513)
Q Consensus 365 ~~-~~~---dg~i~iwd~~~~-~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 434 (513)
++ +.. .+.++|-++... .....+. ...+......-..++..++.. ..+..-+.-|.++++|+.....--
T Consensus 216 ~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred EEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchhhh
Confidence 22 221 267888888543 1001110 001111223334456666665 788889999999999998432211
Q ss_pred eecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce
Q 010324 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK 475 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 475 (513)
... ....++...+.+....=+++....|.|.--.+....
T Consensus 295 ~~r--is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 295 MNR--ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred hcc--ccCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 111 112233333333332233344456665555554433
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.83 E-value=1.2 Score=41.67 Aligned_cols=242 Identities=12% Similarity=0.038 Sum_probs=116.5
Q ss_pred CccEEEEEEcC-CCCEEEEEeCCC----cEEEEEcCCcceeeecccc-------------cccCeEEEEEcc-C-CCEEE
Q 010324 264 DETVLCIEFSR-DSEMLASGSQDG----KIKVWRIRSGQCLRRLERA-------------HSEGVTSLVFSR-D-GSQIL 323 (513)
Q Consensus 264 ~~~v~~l~~~~-~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~-------------~~~~v~~~~~~~-~-~~~l~ 323 (513)
...|.+|++.| +...|..++..| .|...+ ..|+.-..+... ....|.++++.| + ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45799999998 334455554444 343322 333322222111 112477889987 2 55677
Q ss_pred EeeCCCcEEEEecCCCceeeEecc-------------------cccceeEEEEccC-CCEEEEEeCCCcEEEEeCCCCce
Q 010324 324 STSFDSTARIHGLKSGKLLKEFRG-------------------HSSYVNDAIFTND-GSRVVTASSDCTVKVWDLKSTDC 383 (513)
Q Consensus 324 ~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~ 383 (513)
+++..+.|...+ ..++.-..+.. ....+.++.++|. ...+..+..++.|...+ ..++.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 766666665543 22332222211 1235778999873 34555555445444433 22322
Q ss_pred eEeecCCCC---CC----CCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccC--CCcEEEEEECC-C
Q 010324 384 LQTFKPPPP---LR----GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE--GGDFVAACVSP-K 453 (513)
Q Consensus 384 ~~~~~~~~~---~~----~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~s~-~ 453 (513)
-..+..... +. .....+.++.+.|.++..++++...+ |+..+-.+.....+...... ...+..++++| +
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCCcceECCCCCCCCCccceEEEEECCCC
Confidence 222211000 00 00135788999987667777776544 55554445555444321111 03356777876 3
Q ss_pred CCEEEEEec-----------CceEEEEECCC-ceeeEee----ecccC----CeEEEEEcCC-CCEEEEEECCCeEE
Q 010324 454 GEWIYCVGE-----------DRNLYCFSHQS-GKLEHLM----KVHEK----DVIGVTHHPH-RNLLATYGEDCTMK 509 (513)
Q Consensus 454 ~~~l~~g~~-----------dg~i~iwd~~~-~~~~~~~----~~h~~----~v~~~~~~p~-~~~l~s~~~dg~i~ 509 (513)
...++++.. ++...+|...+ |+.-..+ ..... ....++++|. +..|+.++.++.|.
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 344555432 23344555443 2222211 11000 1135788874 34566666555554
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.38 E-value=0.71 Score=47.11 Aligned_cols=153 Identities=8% Similarity=0.043 Sum_probs=83.4
Q ss_pred cCCCEEEEeeCC----CcEEEEecCCCceeeEe-c-----cccc-ceeEEEEcc-CCCEEEEEeCC------CcEEEEeC
Q 010324 317 RDGSQILSTSFD----STARIHGLKSGKLLKEF-R-----GHSS-YVNDAIFTN-DGSRVVTASSD------CTVKVWDL 378 (513)
Q Consensus 317 ~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~-~-----~~~~-~v~~~~~~~-~~~~l~~~~~d------g~i~iwd~ 378 (513)
.++..++.|+.+ ..+.+||..+++....- . .... .-.+++..+ +++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777777754 46888998777543322 1 1111 112333333 67777777743 34788998
Q ss_pred CCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCC--cEEEEEccCeEEEEeec---CccCCCcEEEEEECCC
Q 010324 379 KSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVVKSFSS---GKREGGDFVAACVSPK 453 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~s~~ 453 (513)
.+.+-...-..+. . ..-.+.+...+ +.+++.|+.++ .+.+||........... .........++++..+
T Consensus 476 ~t~~W~~~~~~p~----~-R~~h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 476 KTREWSMIKSLSH----T-RFRHSACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTTEEEECCCCSB----C-CBSCEEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCCcEEECCCCCC----C-cccceEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 8754222211111 1 11122233223 37777776554 68999998766555543 1111222223455544
Q ss_pred -CCEEEEEec--C-----ceEEEEECCCce
Q 010324 454 -GEWIYCVGE--D-----RNLYCFSHQSGK 475 (513)
Q Consensus 454 -~~~l~~g~~--d-----g~i~iwd~~~~~ 475 (513)
++.++.|+. + +.+.+||+.+..
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 667777765 2 469999998776
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.13 E-value=4.2 Score=38.89 Aligned_cols=112 Identities=13% Similarity=0.161 Sum_probs=60.5
Q ss_pred CceeEEEECCCCC-EEEEEecCCeEEEEEeccccccccccccccccccc-----cCCccEEEEEEcCC----CCEEEEEe
Q 010324 214 SHAECARFSPDGQ-FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFM-----MHDETVLCIEFSRD----SEMLASGS 283 (513)
Q Consensus 214 ~~v~~~~~s~~g~-~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~----~~~l~s~~ 283 (513)
...+.|+|.|||. .|+++...|.|+ +++.........+. .....+. +.......|+|+|+ +.+.++-+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~-~~~~~g~~~~~~~~-~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVK-ILTPEGEIFKEPYL-DIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEE-EECTTSCBCSSCSE-ECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEE-EEeCCCCeeeeeec-CCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 4568899999996 455567789996 87643221111111 0001111 12567899999996 43333322
Q ss_pred C--C----------CcEEEEEcCCc----------ceeeecc-cccccCeEEEEEccCCCEEEEeeC
Q 010324 284 Q--D----------GKIKVWRIRSG----------QCLRRLE-RAHSEGVTSLVFSRDGSQILSTSF 327 (513)
Q Consensus 284 ~--d----------g~i~vwd~~~~----------~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 327 (513)
. + ..|.-|.+..+ +.+..+. ......-..|+|.|||.+.++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 2 1 13444555421 1222221 122334688999999987766554
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.83 E-value=3.3 Score=36.61 Aligned_cols=217 Identities=13% Similarity=0.049 Sum_probs=111.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeE
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE 344 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 344 (513)
..|..++-... ..++. . ||.|..|-....-.+..- ......|..++...+. .++. . ||.|+.|-....-.+..
T Consensus 24 ~~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 24 SGVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SSCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC
T ss_pred CCCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC
Confidence 35777776543 22333 5 899999975532222111 1223467777776433 3333 5 89999998654322211
Q ss_pred ecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEE
Q 010324 345 FRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYI 424 (513)
Q Consensus 345 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i 424 (513)
-..-...|..++...+ +.+.-. ||.|..|-......+. .+. .....+..++... ...++-. +|.++.
T Consensus 97 P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg---~~~---~~~~~i~~i~~G~---~~~~~l~-~G~v~~ 163 (282)
T 3qhy_B 97 PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT---VPA---EAQSGVTALDGGV---YTALAVK-NGGVIA 163 (282)
T ss_dssp CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS---CCG---GGGSSEEEEEECS---SEEEEEE-TTEEEE
T ss_pred CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC---CCc---cCCCCeEEEEccc---CEEEEEE-CCEEEE
Confidence 1111345777776644 444445 9999999765422111 010 1123456665543 3333334 799999
Q ss_pred EEcc--CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCCCEEEEE
Q 010324 425 MTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATY 502 (513)
Q Consensus 425 ~d~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 502 (513)
|-.. ++.- ........+..++...+. .++- .||.|+.|-....-.+..-......|..++...... ++.
T Consensus 164 wG~n~~gqlg----~p~~~~~~v~~i~~G~~h--s~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al- 234 (282)
T 3qhy_B 164 WGDNYFGQTT----VPAEAQSGVDDVAGGIFH--SLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYS-LAL- 234 (282)
T ss_dssp EECCTTSTTS----CCGGGGSSEEEEEECSSE--EEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCE-EEE-
T ss_pred ecCCCCCCCC----CceecCCCeEEEEecCCE--EEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEE-EEE-
Confidence 9765 2211 011112346666665433 3333 599999997654221111111123567776654332 332
Q ss_pred ECCCeEEec
Q 010324 503 GEDCTMKLW 511 (513)
Q Consensus 503 ~~dg~i~iW 511 (513)
. ||.|..|
T Consensus 235 ~-~g~v~~w 242 (282)
T 3qhy_B 235 K-NGKVIAW 242 (282)
T ss_dssp E-TTEEEEE
T ss_pred E-CCEEEEe
Confidence 3 8888888
No 354
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.97 E-value=1.5 Score=42.43 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=68.9
Q ss_pred ccEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCcce-------------eeecccccccCeEEEEEccCCCEEEEeeCCCc
Q 010324 265 ETVLCIEFSRDSEMLASGSQ-DGKIKVWRIRSGQC-------------LRRLERAHSEGVTSLVFSRDGSQILSTSFDST 330 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~-dg~i~vwd~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 330 (513)
.....+..+|||++++.++. +.++.++|++.-.. .... .-.-.....+|.++|....+---|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--ELGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--BCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--cCCCcccEEEECCCCceEeeeeecce
Confidence 45567789999999888765 78999999874211 1122 23456788999999955555568999
Q ss_pred EEEEecCCC----------ceeeEecccccceeEEEE------ccCCCEEEEEeC
Q 010324 331 ARIHGLKSG----------KLLKEFRGHSSYVNDAIF------TNDGSRVVTASS 369 (513)
Q Consensus 331 i~i~d~~~~----------~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~ 369 (513)
|.-|++... ..+.++..|-.+ -.+.- .++|++|++...
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEES
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecc
Confidence 999998653 345555544332 22222 578999998763
No 355
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=91.36 E-value=8.7 Score=35.37 Aligned_cols=228 Identities=11% Similarity=0.052 Sum_probs=124.4
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCc-------ceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEec---CC---
Q 010324 272 FSRDSEMLASGSQDGKIKVWRIRSG-------QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL---KS--- 338 (513)
Q Consensus 272 ~~~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~---~~--- 338 (513)
+-|+..++++.+.+|.|+--.+.+- +-+..+.......+..+........++..+..|.++-+.. ..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 3467789999999999998765421 1122222234566666666666677888888887765543 22
Q ss_pred ---CceeeE---ecccccceeEEEEcc---CCCEEEEEeCCCcEEEEeCCCCce-----eEeecCCCCCCCCCceeeEEE
Q 010324 339 ---GKLLKE---FRGHSSYVNDAIFTN---DGSRVVTASSDCTVKVWDLKSTDC-----LQTFKPPPPLRGGDASVNSVH 404 (513)
Q Consensus 339 ---~~~~~~---~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~v~~~~ 404 (513)
|..+.. +. ....|.++.... ++.+++.++..|.++...+..... ...+. +.. ...+..+.
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~----L~~-~d~lv~v~ 156 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAIN----LDE-GDALVGVA 156 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSC----CCT-TCCEEEEE
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEE----eCC-CCEEEEEE
Confidence 222211 22 234455554432 456899999999999887653321 11111 112 23444444
Q ss_pred ecCCCCCeEEEEcCCCcEEEEEccC--------eEEEEeecCccCCCcEEEEEECC------------------------
Q 010324 405 LFPKNPDHIVVCNKTSSIYIMTLQG--------QVVKSFSSGKREGGDFVAACVSP------------------------ 452 (513)
Q Consensus 405 ~~~~~~~~l~~~~~~~~i~i~d~~~--------~~~~~~~~~~~~~~~~~~~~~s~------------------------ 452 (513)
.... ...++..+..|.+..+.... .-++.+.. .....+.++...+
T Consensus 157 ~~~~-~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L--~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~ 233 (370)
T 3l6v_A 157 LTDG-DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRL--AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGA 233 (370)
T ss_dssp EECS-CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEEEEEECCC----------------------
T ss_pred EeCC-CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEe--CCCCEEEEEEEeccccccccccccccccccccccccc
Confidence 4433 36777888888887777541 11221111 1234455554433
Q ss_pred -----------CCCEEEEEecCceEEEEECCCcee-------eEe--eecccCCeEEEEEcCCCCEEEEEECCCeE
Q 010324 453 -----------KGEWIYCVGEDRNLYCFSHQSGKL-------EHL--MKVHEKDVIGVTHHPHRNLLATYGEDCTM 508 (513)
Q Consensus 453 -----------~~~~l~~g~~dg~i~iwd~~~~~~-------~~~--~~~h~~~v~~~~~~p~~~~l~s~~~dg~i 508 (513)
++..+++.+..|..+...+..-.. +.. +....+.+..+.+..+...++..+..|.+
T Consensus 234 ~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~ 309 (370)
T 3l6v_A 234 EPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTL 309 (370)
T ss_dssp -------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCE
T ss_pred cccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeE
Confidence 456899999999988887653211 112 22223455554443344444445555554
No 356
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=90.92 E-value=0.38 Score=32.84 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhcChHHHHHHHHhhcCcc
Q 010324 10 VIKIVLQFCKENSLQQTFQTLQNECQVS 37 (513)
Q Consensus 10 ~~~li~q~L~~~G~~~t~~~L~~Esg~~ 37 (513)
+.-||-.||+-.||+.|+.+|+-|+|.+
T Consensus 21 i~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 21 VASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 6779999999999999999999999996
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=90.88 E-value=9.8 Score=35.10 Aligned_cols=141 Identities=11% Similarity=0.178 Sum_probs=84.2
Q ss_pred cEEEEeCCCC--ceeEeecCCCCCCCCCceeeEEEec---CC---CCCeEEEE-cCCCcEEEEEccCeEEEEeecCcc-C
Q 010324 372 TVKVWDLKST--DCLQTFKPPPPLRGGDASVNSVHLF---PK---NPDHIVVC-NKTSSIYIMTLQGQVVKSFSSGKR-E 441 (513)
Q Consensus 372 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~---~~---~~~~l~~~-~~~~~i~i~d~~~~~~~~~~~~~~-~ 441 (513)
.|.+||+.+. +.++.+..+.......+....+.+. |. +..+++.+ ...+-|.++|+.......+..... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4778999998 8888887765544455678888877 22 12344444 456789999998443333332100 0
Q ss_pred ---------------CCcEEEEEECCC----CCEEEEEecCc-eEEEEEC---CCce---eeEeeecccC---CeEEEEE
Q 010324 442 ---------------GGDFVAACVSPK----GEWIYCVGEDR-NLYCFSH---QSGK---LEHLMKVHEK---DVIGVTH 492 (513)
Q Consensus 442 ---------------~~~~~~~~~s~~----~~~l~~g~~dg-~i~iwd~---~~~~---~~~~~~~h~~---~v~~~~~ 492 (513)
...+..++++|+ ++.|+...-.+ .++--.. +... .+..+ +..+ .-..++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEE
Confidence 135678889988 77887776544 3443331 1211 11112 2222 2335667
Q ss_pred c-CCCCEEEEEECCCeEEeccC
Q 010324 493 H-PHRNLLATYGEDCTMKLWKP 513 (513)
Q Consensus 493 ~-p~~~~l~s~~~dg~i~iWdp 513 (513)
. .+|.++++--..+.|..|+|
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~ 304 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNT 304 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEET
T ss_pred eCCCCeEEEEeccCCeEEEEeC
Confidence 5 57777777778888999975
No 358
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=90.87 E-value=9 Score=34.61 Aligned_cols=167 Identities=11% Similarity=0.117 Sum_probs=97.1
Q ss_pred cccCceeEE-EECC--CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCc
Q 010324 211 GTKSHAECA-RFSP--DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 287 (513)
Q Consensus 211 ~h~~~v~~~-~~s~--~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 287 (513)
.....|.++ ...+ +..++++.+.+|.++ --.+..-..... .....-.+.. .+.+..+........|+..+..|.
T Consensus 92 ~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK-r~~l~~~~~~~r-~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~ 168 (327)
T 3uc1_A 92 QPEERIAQVIQIRGYTDAPYLVLATRNGLVK-KSKLTDFDSNRS-GGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQ 168 (327)
T ss_dssp CTTCCEEEEEEESSTTSSSEEEEEETTSEEE-EEEGGGGCCCCS-SCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSE
T ss_pred CCCCEEEEEEEeccCCCCCEEEEEcCCCEEE-EeEHHHhhcccc-CceEEEEECC-CCEEEEEEEecCCCEEEEEECCCe
Confidence 344555554 4442 578999999999997 666543221111 0001112222 344555555555567888888999
Q ss_pred EEEEEcC--Ccce-------eeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC-------ceeeE--ecccc
Q 010324 288 IKVWRIR--SGQC-------LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-------KLLKE--FRGHS 349 (513)
Q Consensus 288 i~vwd~~--~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~--~~~~~ 349 (513)
+..+... .-.. +.-+.......|.++...+++..++..+..|.++.-.+..- +-+.. +....
T Consensus 169 ~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~ 248 (327)
T 3uc1_A 169 SIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR 248 (327)
T ss_dssp EEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT
T ss_pred EEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC
Confidence 8888766 2111 11122234566777777777778999999999988775432 11222 22213
Q ss_pred cceeEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 010324 350 SYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 380 (513)
Q Consensus 350 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 380 (513)
+.+..+....+...++..+.+|.+..++...
T Consensus 249 d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 249 GRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 3455554444455677778888888777643
No 359
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=90.76 E-value=8.8 Score=34.33 Aligned_cols=230 Identities=13% Similarity=0.124 Sum_probs=120.5
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCccee-------eecccccccCeEEEEEccCCCEEEEeeCCCcEEEEec---CC-----
Q 010324 274 RDSEMLASGSQDGKIKVWRIRSGQCL-------RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL---KS----- 338 (513)
Q Consensus 274 ~~~~~l~s~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~---~~----- 338 (513)
|+..++++.+.+|.|+--.+.+-+.. ..+.......+..+........++..+..|.++-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 45567888999999988776542211 1111123345555555556677888888888665543 22
Q ss_pred -Cceee---EecccccceeEEEEc---cCCCEEEEEeCCCcEEEEeCCCCceeEe--ecCCCCCCCCCceeeEEEecCCC
Q 010324 339 -GKLLK---EFRGHSSYVNDAIFT---NDGSRVVTASSDCTVKVWDLKSTDCLQT--FKPPPPLRGGDASVNSVHLFPKN 409 (513)
Q Consensus 339 -~~~~~---~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~ 409 (513)
|.++. .+. ....|.++... .++.+++..+.+|.++...+........ ... ..+... ..+..+......
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~-i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 81 RGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVA-IKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp CCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEES-SCCCTT-CCEEEEEEECTT
T ss_pred CCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEE-EEECCC-CEEEEEEEeCCC
Confidence 22211 122 23345555432 3456899999999999987643221110 000 011122 344444444333
Q ss_pred CCeEEEEcCCCcEEEEEccC-----e---EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCce------
Q 010324 410 PDHIVVCNKTSSIYIMTLQG-----Q---VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK------ 475 (513)
Q Consensus 410 ~~~l~~~~~~~~i~i~d~~~-----~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~------ 475 (513)
..++..+.+|.+..+.... . .+..+. ...+..+..+....++..+++.+..|.++-.++..-.
T Consensus 158 -~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~--L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~ 234 (307)
T 1zi0_A 158 -DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR--LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT 234 (307)
T ss_dssp -CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC--CCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTS
T ss_pred -CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEE--eCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCC
Confidence 6778888888888877641 1 111111 1224557776665666788999999998888763211
Q ss_pred ---eeEeeecccCCeEEEEEcCCCCEEEEEECCCeEE
Q 010324 476 ---LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMK 509 (513)
Q Consensus 476 ---~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~ 509 (513)
....+....+.+..+....+...++..+.+|.+.
T Consensus 235 kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~i 271 (307)
T 1zi0_A 235 KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV 271 (307)
T ss_dssp CCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEE
T ss_pred CCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEE
Confidence 1111222224554444433334455555566543
No 360
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.05 E-value=9.5 Score=33.60 Aligned_cols=239 Identities=12% Similarity=0.011 Sum_probs=122.3
Q ss_pred ceeEEEECCCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010324 215 HAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR 294 (513)
Q Consensus 215 ~v~~~~~s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~ 294 (513)
.|..++.... ..++. . ||.+ +.|-........... . ....|..++-..+. .++. . ||.|..|-..
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v-~~wG~n~~Gqlg~p~----~----~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n 89 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKV-LGWGANLNGQLTMPA----A----TQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGN 89 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEE-EEEECCSSSTTSCCG----G----GGSCCCEEEECSSE-EEEE-E-TTEEEEEECC
T ss_pred CCcEEEeCCC-eEEEE-E-CCEE-EEEeCCCCCCCCCCc----c----CCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCC
Confidence 4555555433 22333 4 8988 588765432221100 0 12356677765433 3333 4 8999999754
Q ss_pred CcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEecccccceeEEEEccCCCEEEEEeCCCcEE
Q 010324 295 SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374 (513)
Q Consensus 295 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 374 (513)
..-.+..-. .-...|..++...+ +.+.-+ ||.|+.|-....-.+..-......|..++...+ +.+.-. ||.+.
T Consensus 90 ~~Gqlg~P~-~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~ 162 (282)
T 3qhy_B 90 EDGQTTVPA-EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVI 162 (282)
T ss_dssp TTSTTCCCG-GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEE
T ss_pred CCCCCCCCc-ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEE
Confidence 322111111 12346888877643 444445 999999976543222111122345766666543 333334 79999
Q ss_pred EEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--CeEEEEeecCccCCCcEEEEEECC
Q 010324 375 VWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSP 452 (513)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~s~ 452 (513)
.|-......+. .+. .....+..++.-. ...++- .+|.++.|-.. ++.- . .......+..++...
T Consensus 163 ~wG~n~~gqlg---~p~---~~~~~v~~i~~G~---~hs~al-~~G~v~~wG~n~~gqlg--~--p~~~~~~v~~i~~G~ 228 (282)
T 3qhy_B 163 AWGDNYFGQTT---VPA---EAQSGVDDVAGGI---FHSLAL-KDGKVIAWGDNRYKQTT--V--PTEALSGVSAIASGE 228 (282)
T ss_dssp EEECCTTSTTS---CCG---GGGSSEEEEEECS---SEEEEE-ETTEEEEEECCTTSTTC--C--CGGGGSSCCEEEECS
T ss_pred EecCCCCCCCC---Cce---ecCCCeEEEEecC---CEEEEE-ECCeEEEEECCCCCCCC--C--CcccCCCceEEEcCC
Confidence 99765422111 111 1123566666543 333333 69999999765 2211 0 011123455666554
Q ss_pred CCCEEEEEecCceEEEEECCCceeeEeeecccCCeEEEEEcCCC
Q 010324 453 KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR 496 (513)
Q Consensus 453 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~ 496 (513)
.. .++-. ||.|+.|=.....++.. ...|.+++..+..
T Consensus 229 ~h--~~al~-~g~v~~wG~n~~gq~~v----~~~v~~iaaG~~h 265 (282)
T 3qhy_B 229 WY--SLALK-NGKVIAWGSSRTAPSSV----QSGVSSIEAGPNA 265 (282)
T ss_dssp SC--EEEEE-TTEEEEESTTCCCCGGG----SSCEEEEEECSSC
T ss_pred CE--EEEEE-CCEEEEecCCCCccccC----CCCcEEEEECcCe
Confidence 33 33333 99999997655433322 2357777765443
No 361
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.60 E-value=15 Score=35.13 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=61.0
Q ss_pred ccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCcc---eeeeccc--------ccccCeEEEEEccC----CCEEEEeeC-
Q 010324 265 ETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQ---CLRRLER--------AHSEGVTSLVFSRD----GSQILSTSF- 327 (513)
Q Consensus 265 ~~v~~l~~~~~~~-~l~s~~~dg~i~vwd~~~~~---~~~~~~~--------~~~~~v~~~~~~~~----~~~l~~~~~- 327 (513)
.....|+|.|+|. .|+++...|.|++++..... .+..+.. ........|+|+|+ +...++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3567899999996 56666789999999743221 1111110 11456889999996 333333221
Q ss_pred -C----------CcEEEEecCC----------CceeeEec--ccccceeEEEEccCCCEEEEEeCC
Q 010324 328 -D----------STARIHGLKS----------GKLLKEFR--GHSSYVNDAIFTNDGSRVVTASSD 370 (513)
Q Consensus 328 -d----------g~i~i~d~~~----------~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d 370 (513)
+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1344455432 12233322 122346789999999877776654
No 362
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=88.95 E-value=13 Score=33.54 Aligned_cols=243 Identities=14% Similarity=0.115 Sum_probs=128.8
Q ss_pred CCCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC--------
Q 010324 223 PDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR-------- 294 (513)
Q Consensus 223 ~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~-------- 294 (513)
|+..++++.+.+|.|+ --....-+..... ...+. -.+.+..+......+.|+..+..|.+.-....
T Consensus 3 ~~e~~~v~lT~~G~IK-r~~~~~~~~~~~~----~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~ 76 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVK-RTSLRSYAASNGQ----DFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWK 76 (323)
T ss_dssp SCCEEEEEEETTCEEE-EEEHHHHHHTTTC----CCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred cCCcEEEEEeCCCEEE-EeEHHHhhhcCcc----ccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCC
Confidence 5667889999999997 4433211110000 00122 23445555555556677777788887666542
Q ss_pred -Ccceeeec-ccccccCeEEEEEccC---CCEEEEeeCCCcEEEEecCCC--------ceeeEecccccceeEEEEccCC
Q 010324 295 -SGQCLRRL-ERAHSEGVTSLVFSRD---GSQILSTSFDSTARIHGLKSG--------KLLKEFRGHSSYVNDAIFTNDG 361 (513)
Q Consensus 295 -~~~~~~~~-~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~v~~~~~~~~~ 361 (513)
.|.++... .......|.++...++ +.+++.++.+|.++-..+..- .....+... +.+..+......
T Consensus 77 a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~ 155 (323)
T 1wp5_A 77 DLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGM 155 (323)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSC
T ss_pred CCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCC
Confidence 12322221 1123445665543332 668999999999999877422 222223322 455555555555
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEeecC---CCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC--------e
Q 010324 362 SRVVTASSDCTVKVWDLKSTDCLQTFKP---PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--------Q 430 (513)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~--------~ 430 (513)
..++..+.+|.+..++...-........ ...+ .....+.++...+.+...+++.+..|..+..++.. +
T Consensus 156 ~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k 234 (323)
T 1wp5_A 156 NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNL-KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR 234 (323)
T ss_dssp SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCC-CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC
T ss_pred CEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEe-CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC
Confidence 6788889999998887653211110000 0001 12344555554444422688888888887777642 2
Q ss_pred EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 431 VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
.+.........+..+..+....++..++..+.+|.+....+..
T Consensus 235 Gv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 235 GVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred CEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 2222222222222455433333445566777788776666543
No 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=88.86 E-value=15 Score=34.15 Aligned_cols=194 Identities=11% Similarity=0.151 Sum_probs=102.0
Q ss_pred CeEEEEEccCCCEEEEeeCCCcEEEEecCCCc-----------eeeEecc-cccceeEEEEccCCCEEEEEeCCCcEEEE
Q 010324 309 GVTSLVFSRDGSQILSTSFDSTARIHGLKSGK-----------LLKEFRG-HSSYVNDAIFTNDGSRVVTASSDCTVKVW 376 (513)
Q Consensus 309 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 376 (513)
.+..++. .....+.-..||.|+.|-....- ....+.. ....+..++++....+.+..+.||.|..|
T Consensus 54 ~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 4555544 34466666789999999654211 1111111 12234446666666777788899999999
Q ss_pred eCCCCce--------eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC--e--------EEEEeecC
Q 010324 377 DLKSTDC--------LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--Q--------VVKSFSSG 438 (513)
Q Consensus 377 d~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~--~--------~~~~~~~~ 438 (513)
-...... ......... -....|..++.. ....++-..+|.|+.|-... + ........
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~--l~~~~i~~va~G---~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~ 206 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIES--LRGIEVVDVAAG---GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVE 206 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGG--GTTSCEEEEEEC---SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECG
T ss_pred eCCCCCcCCCCCCccCcCCeEecc--cCCCeEEEEEeC---cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEec
Confidence 6432110 000000000 011245555543 35667777899999997541 1 11111111
Q ss_pred ccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCc-e----------eeEeeec-ccCCeEEEEEcCCCCEEEEEECCC
Q 010324 439 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG-K----------LEHLMKV-HEKDVIGVTHHPHRNLLATYGEDC 506 (513)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~----------~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg 506 (513)
......+..++......+.++-..||.|+.|-.... + ....+.. ....|..++... ...+.-..||
T Consensus 207 ~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G 284 (389)
T 3kci_A 207 ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSG 284 (389)
T ss_dssp GGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTS
T ss_pred ccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCC
Confidence 122345677777655567777888999999965421 1 1111111 122455555532 3344446778
Q ss_pred eEEec
Q 010324 507 TMKLW 511 (513)
Q Consensus 507 ~i~iW 511 (513)
.|..|
T Consensus 285 ~v~~w 289 (389)
T 3kci_A 285 AVYTW 289 (389)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88777
No 364
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.57 E-value=23 Score=36.00 Aligned_cols=244 Identities=9% Similarity=0.014 Sum_probs=120.0
Q ss_pred eEEE-ECCCCCEEEEEe----cC-CeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEE--------
Q 010324 217 ECAR-FSPDGQFLVSCS----FD-GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG-------- 282 (513)
Q Consensus 217 ~~~~-~s~~g~~la~g~----~d-g~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-------- 282 (513)
..+. ++|++++++.+- .| ..++ ++|+.+++.+..--....+.-.--......++|..++..+++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~-~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFR-EWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEE-EEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEE-EEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 3455 899999888752 23 3575 9999998876421100000000000011334676333333321
Q ss_pred --eCCCcEEEEEcCCcce--eeecccccccCeEEEEEccCCCE-----EEEeeCC---CcEEEEecCC--CceeeEeccc
Q 010324 283 --SQDGKIKVWRIRSGQC--LRRLERAHSEGVTSLVFSRDGSQ-----ILSTSFD---STARIHGLKS--GKLLKEFRGH 348 (513)
Q Consensus 283 --~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-----l~~~~~d---g~i~i~d~~~--~~~~~~~~~~ 348 (513)
+....|+.|.+-+... ...+.......-.+...++++.+ +++.+.+ ..+++.+... ++ ...+...
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 289 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMP 289 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecC
Confidence 1124688888765432 22232112222334555666662 4443322 4566666543 33 2233222
Q ss_pred ccceeEEEEccCCCEEEEE----------eCCCcEEEEeCCCCc-------eeEeecCCCCCCCCCceeeEEEecCCCCC
Q 010324 349 SSYVNDAIFTNDGSRVVTA----------SSDCTVKVWDLKSTD-------CLQTFKPPPPLRGGDASVNSVHLFPKNPD 411 (513)
Q Consensus 349 ~~~v~~~~~~~~~~~l~~~----------~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (513)
.. ..+..+.++.+++.. ...+.|...|+.++. ....+-.+ .....+..+.+..+ .
T Consensus 290 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~--~ 361 (711)
T 4hvt_A 290 SD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTP----TANEVFNFISTTKD--R 361 (711)
T ss_dssp TT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECC----CTTEEEEEEEECSS--C
T ss_pred Cc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECC----CCCCeEEEEEEECC--E
Confidence 21 112344555555532 246778888887642 11221111 23457778888764 6
Q ss_pred eEEEEcCCCc--EEEEEccCeE--EEE-eecCccCCCcEEEEEECCCCCE-EEEEe---cCceEEEEECC
Q 010324 412 HIVVCNKTSS--IYIMTLQGQV--VKS-FSSGKREGGDFVAACVSPKGEW-IYCVG---EDRNLYCFSHQ 472 (513)
Q Consensus 412 ~l~~~~~~~~--i~i~d~~~~~--~~~-~~~~~~~~~~~~~~~~s~~~~~-l~~g~---~dg~i~iwd~~ 472 (513)
++++...++. +.++++.+.. ... +... ..+.+.....++++.. +++.+ .-+.++.+|..
T Consensus 362 l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp--~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 362 VFLATYDNVVAKVVTFTLENEQWTKPVVLKLP--YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEEETTEEEEEEECEETTEECCCEEECCC--STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEECCEEEEEEEECCCCceEEEeccCCC--CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 7777777764 6666665332 222 2111 1234555666676654 44443 34678888876
No 365
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=88.34 E-value=14 Score=33.15 Aligned_cols=194 Identities=11% Similarity=0.128 Sum_probs=111.8
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCcce-------eeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecC---CC----
Q 010324 274 RDSEMLASGSQDGKIKVWRIRSGQC-------LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK---SG---- 339 (513)
Q Consensus 274 ~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~---- 339 (513)
|+..++++.+.+|.|+--.+..-.. +..+.......+..+........++..+..|.++-.... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 4667889999999999887654321 111221234556666666566788888889987766542 11
Q ss_pred --ce---eeEecccccceeEEEEcc---CCCEEEEEeCCCcEEEEeCCCCceeEe--ecCCCCCCCCCceeeEEEecCCC
Q 010324 340 --KL---LKEFRGHSSYVNDAIFTN---DGSRVVTASSDCTVKVWDLKSTDCLQT--FKPPPPLRGGDASVNSVHLFPKN 409 (513)
Q Consensus 340 --~~---~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~ 409 (513)
.. ...+.. ...|.++...+ ++.+++..+.+|.++...+........ ... ..+.. ...+..+.....
T Consensus 86 ~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~-i~L~~-~d~lv~~~~~~~- 161 (312)
T 1suu_A 86 KGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIV-IKLND-KDFVTSAEIVFK- 161 (312)
T ss_dssp --CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEEC-BCCCT-TCCEEEEEEECT-
T ss_pred CCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEE-EecCC-CCEEEEEEEeCC-
Confidence 11 111221 23344444332 456888999999999887753321110 000 01112 344555544433
Q ss_pred CCeEEEEcCCCcEEEEEccC--------eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 410 PDHIVVCNKTSSIYIMTLQG--------QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 410 ~~~l~~~~~~~~i~i~d~~~--------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
...++..+.+|....+.... .-+..+... .+..+..+..-.++..+++.+..|.....++..
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~--~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK--EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC--TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC--CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 36788889999988887752 112222211 244566666655667788999999999888753
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.33 E-value=28 Score=36.79 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=47.8
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCceeeEEEecCCCCCeEEEE---cCCCcEEEEEc
Q 010324 351 YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC---NKTSSIYIMTL 427 (513)
Q Consensus 351 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~~~~i~i~d~ 427 (513)
.+.+++..++..++++.+.|+++|+|++.+++++.+.......... .........|.....+.+. ..+|...+|.+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~-~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~ 315 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPL-QSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL 315 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCS-CCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCcc-ccccccccCCCcccEEEEEEcCCCCcEEEEEEE
Confidence 4667778888889999999999999999999998876543221111 1111122333333333332 24566777765
Q ss_pred c
Q 010324 428 Q 428 (513)
Q Consensus 428 ~ 428 (513)
.
T Consensus 316 ~ 316 (950)
T 4gq2_M 316 N 316 (950)
T ss_dssp E
T ss_pred e
Confidence 4
No 367
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.40 E-value=9.4 Score=40.40 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=34.6
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecc
Q 010324 264 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE 303 (513)
Q Consensus 264 ~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 303 (513)
...+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3467888888899999999999999999999999887653
No 368
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=86.95 E-value=19 Score=33.22 Aligned_cols=173 Identities=10% Similarity=0.094 Sum_probs=92.9
Q ss_pred cEEEEecCCC--ceeeEecc------cccceeEEEEc---cC----CCEEEEEe-CCCcEEEEeCCCCceeEeecCCCCC
Q 010324 330 TARIHGLKSG--KLLKEFRG------HSSYVNDAIFT---ND----GSRVVTAS-SDCTVKVWDLKSTDCLQTFKPPPPL 393 (513)
Q Consensus 330 ~i~i~d~~~~--~~~~~~~~------~~~~v~~~~~~---~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 393 (513)
.|.+||+.++ +.++++.- ..+.+..+.+. |+ +.++..+. ..+.|.++|+.+++.-+........
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4666777777 66665542 23457788887 22 23433333 4677999999998765544211000
Q ss_pred C--------CC----CceeeEEEecCCC---CCeEEEEc-CCCcEEEEEcc---C----eEEEEeecCccCCCcEEEEEE
Q 010324 394 R--------GG----DASVNSVHLFPKN---PDHIVVCN-KTSSIYIMTLQ---G----QVVKSFSSGKREGGDFVAACV 450 (513)
Q Consensus 394 ~--------~~----~~~v~~~~~~~~~---~~~l~~~~-~~~~i~i~d~~---~----~~~~~~~~~~~~~~~~~~~~~ 450 (513)
. +. ...+..++++|+. ...++... ....++-.... . ..++.+-. ....+.-..++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeee-cCCCCCcceEEE
Confidence 0 10 2367788888871 23444433 33345544421 1 11121111 111133445677
Q ss_pred C-CCCCEEEEEecCceEEEEECCC-c---eeeEeee-cc-cCCeEEEEEcCCCCEEEEEE
Q 010324 451 S-PKGEWIYCVGEDRNLYCFSHQS-G---KLEHLMK-VH-EKDVIGVTHHPHRNLLATYG 503 (513)
Q Consensus 451 s-~~~~~l~~g~~dg~i~iwd~~~-~---~~~~~~~-~h-~~~v~~~~~~p~~~~l~s~~ 503 (513)
. .+|...++--+.+.|..|+..+ . .-...+. .. -..+..+.+.+++.+.+.++
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5 5676666666889999999875 1 1112221 11 12467888877877666654
No 369
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=86.68 E-value=17 Score=32.49 Aligned_cols=240 Identities=13% Similarity=0.140 Sum_probs=125.6
Q ss_pred CCCCEEEEEecCCeEEEEEecccccccccc-ccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC------
Q 010324 223 PDGQFLVSCSFDGFIEVVWDYLSGKLKKDL-QYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS------ 295 (513)
Q Consensus 223 ~~g~~la~g~~dg~i~~iwd~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~------ 295 (513)
++..++++.+.+|.|+ --....-.....- .....-.+. -.+.+..+......+.++..+..|.++-.....
T Consensus 6 ~~e~~~v~~T~~G~iK-r~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLK-RLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEE-EEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEE-EeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 4567889999999997 5544322111100 000000112 223444554455556777778889877776532
Q ss_pred ---cceee-ecccccccCeEEEEEcc---CCCEEEEeeCCCcEEEEecCC-------CceeeEecccccceeEEEEccCC
Q 010324 296 ---GQCLR-RLERAHSEGVTSLVFSR---DGSQILSTSFDSTARIHGLKS-------GKLLKEFRGHSSYVNDAIFTNDG 361 (513)
Q Consensus 296 ---~~~~~-~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~ 361 (513)
|..+. .+.......|.++...+ +..+++..+.+|.++...+.. |.....+.. ...+..+....++
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 11110 11112334565554443 467888999999999887743 222223333 4456666555556
Q ss_pred CEEEEEeCCCcEEEEeCCCCce-------eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC-----
Q 010324 362 SRVVTASSDCTVKVWDLKSTDC-------LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG----- 429 (513)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----- 429 (513)
..++..+.+|.+..+....-.. +..+.. .....+.++.....+ ..+++.+..|......+..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L-----~~~d~vv~~~~v~~~-~~l~~vt~~G~~kr~~~~e~~~~~ 236 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL-----KEGDLFVKVLSVKEN-PYLLIVSENGYGKRLNMSKISELK 236 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC-----CTTCCEEEEEECTTC-SEEEEEETTSEEEEEEGGGSCBCC
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe-----CCCCEEEEEEEECCC-CeEEEEECCCceEEEEHHHhcccC
Confidence 6788999999999987753211 111111 123445555554433 5677888888888888742
Q ss_pred ---eEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEEC
Q 010324 430 ---QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 430 ---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 471 (513)
+-+............+..+....++..+...+..|.+.-...
T Consensus 237 R~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 237 RGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp TTCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred CCCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 222222222112233443333234455556666665444443
No 370
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=86.53 E-value=18 Score=32.60 Aligned_cols=274 Identities=10% Similarity=0.121 Sum_probs=138.3
Q ss_pred CEEEEEecCCeEEEEEecccccccccc-ccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEE---cCC------
Q 010324 226 QFLVSCSFDGFIEVVWDYLSGKLKKDL-QYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR---IRS------ 295 (513)
Q Consensus 226 ~~la~g~~dg~i~~iwd~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd---~~~------ 295 (513)
..+++-+.+|.|+ --.+.+-+....- .......+. ..+.+..+........|+.-+..|.++-.. +..
T Consensus 4 ~v~v~ls~~GyiK-r~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 4 DVVVTITETGYAK-RTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp EEEEEEETTSEEE-EEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred cEEEEEeCCCEEE-EeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 4677888889887 4332211100000 000000111 244555555555566677677788766554 322
Q ss_pred cceeeec-ccccccCeEEEEEcc---CCCEEEEeeCCCcEEEEecCCCc-------eeeEecccccceeEEEEccCCCEE
Q 010324 296 GQCLRRL-ERAHSEGVTSLVFSR---DGSQILSTSFDSTARIHGLKSGK-------LLKEFRGHSSYVNDAIFTNDGSRV 364 (513)
Q Consensus 296 ~~~~~~~-~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l 364 (513)
|..+..+ .......|.++...+ +..+++..+.+|.++-..+.... ....++. ...+..+........+
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~i 160 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDL 160 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEE
T ss_pred CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEE
Confidence 2222221 112345566654443 57799999999999998765422 2223333 3445555555556678
Q ss_pred EEEeCCCcEEEEeCC--CCceeEe----ecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC--------e
Q 010324 365 VTASSDCTVKVWDLK--STDCLQT----FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--------Q 430 (513)
Q Consensus 365 ~~~~~dg~i~iwd~~--~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~--------~ 430 (513)
+..+..|.+..+... .-..... ... ..+ .....|.++...+.+ ..++..+..|.++...+.. +
T Consensus 161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~-i~L-~~~d~Vv~~~~~~~~-~~ll~~T~~G~~Krt~l~e~~~~~R~~~ 237 (327)
T 3uc1_A 161 LLVSANGQSIRFSATDEALRPMGRATSGVQG-MRF-NIDDRLLSLNVVREG-TYLLVATSGGYAKRTAIEEYPVQGRGGK 237 (327)
T ss_dssp EEEETTSEEEEEECCTTTSCCCCTTSBCEES-SCC-CTTCCEEEEEECCTT-CEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred EEEECCCeEEEEECcccccCcCCcCCCCeee-ecC-CCCCEEEEEEEECCC-CEEEEEeCCCcEEEEEHHHccccCcCCC
Confidence 888999999888776 2211100 000 011 123456666655543 6788889999988887641 2
Q ss_pred EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCCceee-------Eeee-cccCCeEEEEEcC-CCCEEEE
Q 010324 431 VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE-------HLMK-VHEKDVIGVTHHP-HRNLLAT 501 (513)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~-------~~~~-~h~~~v~~~~~~p-~~~~l~s 501 (513)
.+..+.... ....+..+....+...++..+.+|.+.-++...-... ..+. .....|.++...+ +...+.+
T Consensus 238 G~~~~~l~~-~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~ 316 (327)
T 3uc1_A 238 GVLTVMYDR-RRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNA 316 (327)
T ss_dssp CEESSCCCT-TTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC--------
T ss_pred cEEEEEecC-CCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEE
Confidence 222222111 1334555554445567777888888888876532211 1111 1234566666554 3344555
Q ss_pred EECCC
Q 010324 502 YGEDC 506 (513)
Q Consensus 502 ~~~dg 506 (513)
.+.+|
T Consensus 317 ~~~~g 321 (327)
T 3uc1_A 317 VDANG 321 (327)
T ss_dssp -----
T ss_pred EecCC
Confidence 65554
No 371
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=85.68 E-value=20 Score=32.27 Aligned_cols=191 Identities=14% Similarity=0.139 Sum_probs=108.6
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCcce--eeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEec---CC------Ccee
Q 010324 274 RDSEMLASGSQDGKIKVWRIRSGQC--LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL---KS------GKLL 342 (513)
Q Consensus 274 ~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~---~~------~~~~ 342 (513)
|+..++++.+.+|.|+--.+.+-+. ...+.......+..+........++..+..|.++-+.. .. |.++
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 5667889999999999876542211 01111123455656655556778888888898666543 22 2221
Q ss_pred eE---ecccccceeEEEEcc---CCCEEEEEeCCCcEEEEeCCCCce------eEeecCCCCCCCCCceeeEEEecCCCC
Q 010324 343 KE---FRGHSSYVNDAIFTN---DGSRVVTASSDCTVKVWDLKSTDC------LQTFKPPPPLRGGDASVNSVHLFPKNP 410 (513)
Q Consensus 343 ~~---~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~ 410 (513)
.. +. ....|.++...+ ++.+++.++.+|.++...+..... ...+. +... ..+..+..... .
T Consensus 83 ~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~----l~e~-d~lv~~~~~~~-~ 155 (323)
T 1wp5_A 83 ANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGIN----LKND-DQVVDVHLTDG-M 155 (323)
T ss_dssp GGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSC----CCTT-CCEEEEEEECS-C
T ss_pred hhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEE----eCCC-CEEEEEEEeCC-C
Confidence 11 11 223455543333 256899999999999987753222 11111 1122 34444444433 3
Q ss_pred CeEEEEcCCCcEEEEEccC-----e---EEEEeecCccCCCcEEEEEECCCCC-EEEEEecCceEEEEECCC
Q 010324 411 DHIVVCNKTSSIYIMTLQG-----Q---VVKSFSSGKREGGDFVAACVSPKGE-WIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 411 ~~l~~~~~~~~i~i~d~~~-----~---~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~ 473 (513)
..++..+.+|.+..+.... + .++.+.. ..+..+..+..-+++. .+++.+..|..+..++..
T Consensus 156 ~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L--~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 156 NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNL--KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCC--CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEe--CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 6788888889888887642 1 1222111 1234566665434445 788888899888777653
No 372
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=83.26 E-value=23 Score=31.01 Aligned_cols=197 Identities=11% Similarity=0.065 Sum_probs=108.1
Q ss_pred ccCeEEEEEccCCCEEEEeeCCCcEEEE---ecCCCceeeEecccccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc
Q 010324 307 SEGVTSLVFSRDGSQILSTSFDSTARIH---GLKSGKLLKEFRGHSSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTD 382 (513)
Q Consensus 307 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~---d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 382 (513)
...+..+.-.....+|+.-+.+|.++-. ++..+....-+. ....|..+.... +..+++..+.+|.++...+....
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 4456555555556677777778876653 332221111132 344566654422 46789999999999998875432
Q ss_pred eeEeec-CCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC--------eEEEEeecCccCCCcEEEEEECCC
Q 010324 383 CLQTFK-PPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--------QVVKSFSSGKREGGDFVAACVSPK 453 (513)
Q Consensus 383 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~--------~~~~~~~~~~~~~~~~~~~~~s~~ 453 (513)
...-. ....+. ....+..+..... ...++..+..|.++.+.... .-+..+. ...+..+..+...++
T Consensus 102 -~~~~G~~~i~lk-egD~l~~~~~~~~-~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~--L~~~d~vv~~~~~~~ 176 (276)
T 3no0_A 102 -YKAQGMPIIKLT-EGDEVVSIASSVD-ETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK--LEKNDETSGLRIWNG 176 (276)
T ss_dssp -TCSTTEECSCCC-TTCCEEEEEECCS-SCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC--CCTTCCEEEEEEESS
T ss_pred -hhcCCeEEEecC-CCCEEEEEEEeCC-CCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc--cCCCCEEEEEEEeCC
Confidence 11000 000111 2334444444443 36788888999988887641 1122111 122355666665566
Q ss_pred CCEEEEEecCceEEEEECCC-------ceeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 454 GEWIYCVGEDRNLYCFSHQS-------GKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 454 ~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
+..++..+..|.++...+.. ++-+..+ ...+.+..+....+...++..+.+|.+..
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir 239 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFY 239 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEE
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEE
Confidence 77899999999998887643 2222223 22344554443333345666666776544
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.25 E-value=29 Score=37.65 Aligned_cols=40 Identities=28% Similarity=0.407 Sum_probs=33.3
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecCC
Q 010324 351 YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPP 390 (513)
Q Consensus 351 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 390 (513)
.+.+++..++..++++.+.|+++++|++.+++++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4556667778889999999999999999999998876543
No 374
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=82.28 E-value=49 Score=34.13 Aligned_cols=158 Identities=10% Similarity=0.067 Sum_probs=81.0
Q ss_pred CccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCcceeeecccc------cccCeEEEEEccC-CCEEEEeeCCCc----E
Q 010324 264 DETVLCIEFSRD-SEMLASGSQDGKIKVWRIRSGQCLRRLERA------HSEGVTSLVFSRD-GSQILSTSFDST----A 331 (513)
Q Consensus 264 ~~~v~~l~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~~-~~~l~~~~~dg~----i 331 (513)
...|.+|+++|. ...++.++..+.|...+ ..|+.-..+... ....+.++++.|. ...++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999995 45667777677665554 344443333211 2346999999984 344555443211 2
Q ss_pred EEEe-cCCCceeeEeccc---------ccceeEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCCCCCCcee
Q 010324 332 RIHG-LKSGKLLKEFRGH---------SSYVNDAIFTND-GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASV 400 (513)
Q Consensus 332 ~i~d-~~~~~~~~~~~~~---------~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 400 (513)
.||- ...|+.-...... ...+..++++|. ...+..+...+.|. .....|+.-..+............+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 3333 3334332222110 113567888874 34555555344332 2223333222222111000112457
Q ss_pred eEEEecCCCCCeEEEEcCC-CcEE
Q 010324 401 NSVHLFPKNPDHIVVCNKT-SSIY 423 (513)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~-~~i~ 423 (513)
..+.+.|.++..++++..+ +.++
T Consensus 172 ~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEECTTSTTCEEEEESSTTCEE
T ss_pred EEEEECCCCCCEEEEEEcCCCeEE
Confidence 8888888776677776655 4443
No 375
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.38 E-value=8.8 Score=34.55 Aligned_cols=117 Identities=17% Similarity=0.209 Sum_probs=62.2
Q ss_pred cHHHHHHHhccCCh---hhHHhhhccccCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCchhhhhccCCHHHHHHHHH
Q 010324 43 SIETFVADINSGRW---DAILPQVAQLKLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEH 119 (513)
Q Consensus 43 ~~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~ 119 (513)
.+++|++.|.+|++ =+|-+ .++-.+..++.++++.+|+.+|.+- +...+...+...-.+|..
T Consensus 15 ~i~rl~~~I~~G~y~~~YEAHQ--------------~~RTi~~Ry~~~k~y~eAidLL~~G-A~~ll~~~Q~~sg~DL~~ 79 (336)
T 3lpz_A 15 IIARLQRRIAEGQPEEQYEAAQ--------------ETRLVAARYSKQGNWAAAVDILASV-SQTLLRSGQGGSGGDLAV 79 (336)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHH--------------HHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccccHHHH--------------HHHHHHHHHHhhcCHHHHHHHHHHH-HHHHHHCCCcchHHHHHH
Confidence 46789999999998 44444 4445556666777777777766532 111223333344444444
Q ss_pred HhcccCCCccccccCChHHHHHHHHHHHHhcccccCChhHHHHHHHHHHhhhhhcCCCCCC
Q 010324 120 LLVRTYFDAHEAYQDSTKERRRAQIAQAIAAEVSVVPPSRLMALIGQALKWQQHQGLLPPG 180 (513)
Q Consensus 120 ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~rl~~l~~~~~~~q~~~~~~~~~ 180 (513)
++.......+.... +..+.++.+.+.. ++...|.| ..++..+++|....+..+.|
T Consensus 80 llvevy~~~~~~~~----~~~~~rL~~L~~~-~~~~~p~r-~~fi~~ai~WS~~~g~~~~G 134 (336)
T 3lpz_A 80 LLVDTFRQAGQRVD----GASRGKLLGCLRL-FQPGEPVR-KRFVKEMIDWSKKFGDYPAG 134 (336)
T ss_dssp HHHHHHHHHTCCCC----HHHHHHHHHHHTT-SCTTCHHH-HHHHHHHHHHHHHHSSCTTC
T ss_pred HHHHHHHHcCCCCC----HHHHHHHHHHHHh-CCCCCcHH-HHHHHHHHHHHhhcCCCCCC
Confidence 43321111111111 1334445554443 22223444 68999999999876655544
No 376
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=80.28 E-value=29 Score=30.29 Aligned_cols=165 Identities=12% Similarity=0.077 Sum_probs=96.9
Q ss_pred ccccCceeEEEECC-CCCEEEEEecCCeEEEEEeccccccccccccccccccccCCccEEEEEEcCCCCEEEEEeCCCcE
Q 010324 210 FGTKSHAECARFSP-DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKI 288 (513)
Q Consensus 210 ~~h~~~v~~~~~s~-~g~~la~g~~dg~i~~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 288 (513)
......|..+.... +..+++..+.+|.++ -.....-. ... .....-.+. -.+.+..+........++..+..|.+
T Consensus 64 l~~~e~i~~v~~~~~~~~~~v~~T~~G~iK-r~~l~~~~-~~~-~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~ 139 (276)
T 3no0_A 64 KSREEKIVGAFIREKFGNRLLLATKKGYVK-KIPLAEFE-YKA-QGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRV 139 (276)
T ss_dssp SSTTCCEEEEEEGGGSCSEEEEEETTSEEE-EEEGGGTT-TCS-TTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEE
T ss_pred CCCCCEEEEEECCcCCCCEEEEEeCCCEEE-EEEHHHhh-hhc-CCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEE
Confidence 44556677664421 567999999999997 76654422 110 000111122 23456666666666678888899998
Q ss_pred EEEEcCCcc-------eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCCC-------ceeeEecccccceeE
Q 010324 289 KVWRIRSGQ-------CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-------KLLKEFRGHSSYVND 354 (513)
Q Consensus 289 ~vwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~ 354 (513)
..++...-. -+.-+.......|..+...+++..++..+..|.++...+..- +-+..+ ...+.+..
T Consensus 140 ~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~ 218 (276)
T 3no0_A 140 ARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVD 218 (276)
T ss_dssp EEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEE
T ss_pred EEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEE
Confidence 888764211 111122223456777666666778999999999988876422 222233 23344544
Q ss_pred EEEccCCCEEEEEeCCCcEEE--EeCC
Q 010324 355 AIFTNDGSRVVTASSDCTVKV--WDLK 379 (513)
Q Consensus 355 ~~~~~~~~~l~~~~~dg~i~i--wd~~ 379 (513)
+....+...++..+.+|.+.. ++..
T Consensus 219 ~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 219 LIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 444334456777788888877 7764
No 377
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=78.94 E-value=35 Score=30.37 Aligned_cols=245 Identities=12% Similarity=0.114 Sum_probs=124.4
Q ss_pred CCCCEEEEEecCCeEEEEEecccccccccc-ccccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC-------
Q 010324 223 PDGQFLVSCSFDGFIEVVWDYLSGKLKKDL-QYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR------- 294 (513)
Q Consensus 223 ~~g~~la~g~~dg~i~~iwd~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~------- 294 (513)
|+..++++.+.+|.|+ --.+..-+....- .....-.+. ..+.+..+......+.|+..+..|.+.-....
T Consensus 1 ~~e~~~v~~T~~G~iK-r~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVK-YQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEE-EEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEE-EeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCC
Confidence 4556788899999887 4443321111000 000000111 12344444444455567777778876666542
Q ss_pred --Ccceeeec-ccccccCeEEEEEc---cCCCEEEEeeCCCcEEEEecCCC-------ceeeEecccccceeEEEEccCC
Q 010324 295 --SGQCLRRL-ERAHSEGVTSLVFS---RDGSQILSTSFDSTARIHGLKSG-------KLLKEFRGHSSYVNDAIFTNDG 361 (513)
Q Consensus 295 --~~~~~~~~-~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~ 361 (513)
.|..+..+ .......|.++... +++.+++..+.+|.++-..+..- .....+... +.+..+....+.
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 12222211 11234456666442 35668999999999998876422 122223333 445555555555
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEeec-C--CCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccC--------e
Q 010324 362 SRVVTASSDCTVKVWDLKSTDCLQTFK-P--PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--------Q 430 (513)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~--------~ 430 (513)
..++..+.+|.+..++...-....... . ...+ .....+.++...+++ ..+++.+..|..+-.++.. +
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~-~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k 235 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL-GEGDKVVSLIVPRGD-GAILTATQNGYGKRTAVAEYPTKSRATK 235 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEECCCSS-CEEEEEETTSEEEEECGGGSCCCCTTSC
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe-CCCCEEEEEEEecCC-CEEEEEEcCCceEEEEHHHhccCCCCCC
Confidence 678888899998888764321110000 0 0011 123455566554433 5688888888888877742 1
Q ss_pred EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEECCC
Q 010324 431 VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473 (513)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 473 (513)
....... ....+.+..+....+...++..+.+|.+.-++...
T Consensus 236 G~~~~~~-~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 236 GVISIKV-TERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp CEESSCC-CTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CEEeeEe-cCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 1222211 11224455544433445566777777776666544
No 378
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=75.99 E-value=48 Score=30.41 Aligned_cols=242 Identities=12% Similarity=0.112 Sum_probs=128.5
Q ss_pred CCCCCEEEEEecCCeEEEEEeccccccccccc-cccccccccCCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC------
Q 010324 222 SPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQ-YQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR------ 294 (513)
Q Consensus 222 s~~g~~la~g~~dg~i~~iwd~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~------ 294 (513)
-|+..++++.+.+|.|+ --.+..-.....-. ......+. ....+..+........|+..+..|.+.-+...
T Consensus 4 I~~e~~~v~lT~~GyIK-r~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAK-RQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCEEEEEESSCEEE-EEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred ccCCCEEEEEeCCCEEE-EeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 46778999999999997 43322111000000 00000111 34556666666666677777788877666532
Q ss_pred ---Ccceeeec-ccccccCeEEEEEcc---CCCEEEEeeCCCcEEEEecCCC-------ceeeEecccccceeEEEEccC
Q 010324 295 ---SGQCLRRL-ERAHSEGVTSLVFSR---DGSQILSTSFDSTARIHGLKSG-------KLLKEFRGHSSYVNDAIFTND 360 (513)
Q Consensus 295 ---~~~~~~~~-~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~ 360 (513)
.|..+..+ .......|.++...+ ++.+|+.++..|.++...+... .....++. ...+..+.....
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 12222211 112345566655432 4568999999999998876432 22223332 344555555555
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcee-------EeecCCCCCCCCCceeeEEEecCC-------------------------
Q 010324 361 GSRVVTASSDCTVKVWDLKSTDCL-------QTFKPPPPLRGGDASVNSVHLFPK------------------------- 408 (513)
Q Consensus 361 ~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~------------------------- 408 (513)
...++..+.+|.+..++...-... .-+. + .....+.++...+.
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~----L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~ 235 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIR----L-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEP 235 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC----C-CTTCCEEEEEEECCC------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEE----e-CCCCEEEEEEEeccccccccccccccccccccccccccc
Confidence 567888889999888875432111 1111 1 12234444444331
Q ss_pred ---------CCCeEEEEcCCCcEEEEEcc--------CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEEC
Q 010324 409 ---------NPDHIVVCNKTSSIYIMTLQ--------GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 471 (513)
Q Consensus 409 ---------~~~~l~~~~~~~~i~i~d~~--------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 471 (513)
....+++.+..|..+...+. ++.+..+.... ..+.+..+.+..++..++..+..|.+.-..+
T Consensus 236 ~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~-~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 236 AVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTE-RNGKLVRAVLLGSTDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp -----------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCT-TTCSEEEEEEECTTCEEEEEETTCCEEEEEG
T ss_pred cccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecC-CCCcEEEEEEeCCCceEEEEcCCCeEEEeeH
Confidence 23578888888888887764 12233332222 2234555444344456666677777666654
Q ss_pred C
Q 010324 472 Q 472 (513)
Q Consensus 472 ~ 472 (513)
.
T Consensus 315 ~ 315 (370)
T 3l6v_A 315 S 315 (370)
T ss_dssp G
T ss_pred h
Confidence 3
No 379
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=75.59 E-value=4 Score=26.13 Aligned_cols=34 Identities=6% Similarity=0.019 Sum_probs=30.3
Q ss_pred cChhhHHHHHHHHHhhcChHHHHHHHHhhcCccc
Q 010324 5 IEARDVIKIVLQFCKENSLQQTFQTLQNECQVSL 38 (513)
Q Consensus 5 ~~~~e~~~li~q~L~~~G~~~t~~~L~~Esg~~~ 38 (513)
-+|+.+.|||+--|.--||.+.|..|..+-+..-
T Consensus 14 K~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~~ 47 (66)
T 2xz2_A 14 KNREILYRLMISQLMYDGLEKFAMELSMLVKADQ 47 (66)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 3688999999999999999999999999988644
No 380
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=75.00 E-value=5.3 Score=31.47 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=44.0
Q ss_pred HHHHHHHhccCChhhHHhhhccccCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCchhhhhccCCHHHHHHHHHH
Q 010324 44 IETFVADINSGRWDAILPQVAQLKLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEHL 120 (513)
Q Consensus 44 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~l 120 (513)
...|+..|.+ ..|---..|. ..+|.++-+.|++|+..+...+|..++++..+.. ...+.+.++.|..+
T Consensus 31 y~~L~~wv~~-sld~yk~EL~------~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~--~~~~~~~i~~L~~i 98 (156)
T 2nxp_A 31 YSGLKHFIEC-SLDCHRAELS------QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQ--ECYYQDDLRVLSSL 98 (156)
T ss_dssp HHHHHHHHHT-SCHHHHHHHG------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGS--CGGGHHHHHHHHTC
T ss_pred HHHHHHHHHh-CcHHHHHHHH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHh--HHHHHHHHHHHhcC
Confidence 4456665544 3333233333 3389999999999999999999999998654432 34445555665443
No 381
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=74.04 E-value=80 Score=32.04 Aligned_cols=225 Identities=12% Similarity=0.092 Sum_probs=111.2
Q ss_pred EEEEE-EcCCCCEEEEEe-CC----CcEEEEEcCCcceeeeccccc-cc------CeEEEEEccCCCEEEEeeC------
Q 010324 267 VLCIE-FSRDSEMLASGS-QD----GKIKVWRIRSGQCLRRLERAH-SE------GVTSLVFSRDGSQILSTSF------ 327 (513)
Q Consensus 267 v~~l~-~~~~~~~l~s~~-~d----g~i~vwd~~~~~~~~~~~~~~-~~------~v~~~~~~~~~~~l~~~~~------ 327 (513)
...+. ++|++++++.+- .. ..++++|+.+++.+..-.... +. ....++|. |.+.++.+..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCc
Confidence 44555 889998777652 22 379999999998764221100 00 11345887 4444544421
Q ss_pred -----CCcEEEEecCCCc--eeeEecccccc-eeEEEEccCCCE-----EEEEeCC---CcEEEEeCCCCc-eeEeecCC
Q 010324 328 -----DSTARIHGLKSGK--LLKEFRGHSSY-VNDAIFTNDGSR-----VVTASSD---CTVKVWDLKSTD-CLQTFKPP 390 (513)
Q Consensus 328 -----dg~i~i~d~~~~~--~~~~~~~~~~~-v~~~~~~~~~~~-----l~~~~~d---g~i~iwd~~~~~-~~~~~~~~ 390 (513)
...|+.|.+.+.. -...+.+.... -.+...++++.+ +++.+.+ ..+.+.|..... ....+..+
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMP 289 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSC
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecC
Confidence 2458888775542 12223332222 233445666663 4443322 345666654311 12222211
Q ss_pred CCCCCCCceeeEEEecCCCCCeEEEE----------cCCCcEEEEEccCe--------EEEEeecCccCCCcEEEEEECC
Q 010324 391 PPLRGGDASVNSVHLFPKNPDHIVVC----------NKTSSIYIMTLQGQ--------VVKSFSSGKREGGDFVAACVSP 452 (513)
Q Consensus 391 ~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~~~~i~i~d~~~~--------~~~~~~~~~~~~~~~~~~~~s~ 452 (513)
. ... +..+..+ .+++.. ...+.|...++.+. ....+.... ....+..+.+..
T Consensus 290 ~-----~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 359 (711)
T 4hvt_A 290 S-----DAT---LQGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT-ANEVFNFISTTK 359 (711)
T ss_dssp T-----TCE---EEEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC-TTEEEEEEEECS
T ss_pred C-----cce---EeeeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC-CCCeEEEEEEEC
Confidence 1 111 1122222 333322 14567888887642 122222222 234566788876
Q ss_pred CCCEEEEEecCce--EEEEECCCce-eeEe-eecc-cCCeEEEEEcCCCC-EEEEEE
Q 010324 453 KGEWIYCVGEDRN--LYCFSHQSGK-LEHL-MKVH-EKDVIGVTHHPHRN-LLATYG 503 (513)
Q Consensus 453 ~~~~l~~g~~dg~--i~iwd~~~~~-~~~~-~~~h-~~~v~~~~~~p~~~-~l~s~~ 503 (513)
+ .++++...++. +++++..++. .... +... .+.+..+..++++. ++++.+
T Consensus 360 ~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 360 D-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp S-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred C-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence 5 56677776764 7778876664 2222 2211 24566666667654 444443
No 382
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=71.47 E-value=93 Score=31.71 Aligned_cols=103 Identities=13% Similarity=0.083 Sum_probs=55.0
Q ss_pred cEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCcceeeecccc------cccCeEEEEEcc-CCCEEEEeeCC-------Cc
Q 010324 266 TVLCIEFSRDS-EMLASGSQDGKIKVWRIRSGQCLRRLERA------HSEGVTSLVFSR-DGSQILSTSFD-------ST 330 (513)
Q Consensus 266 ~v~~l~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~-~~~~l~~~~~d-------g~ 330 (513)
.|..|+++|.. ..++.+...+.|...+ ..|+.-..+... ....|.+++++| +.+.++++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999953 4566666566665554 334433333211 124699999998 44455544421 12
Q ss_pred EEEEecC-CCceeeEecc-c--------ccceeEEEEccC-CCEEEEEeC
Q 010324 331 ARIHGLK-SGKLLKEFRG-H--------SSYVNDAIFTND-GSRVVTASS 369 (513)
Q Consensus 331 i~i~d~~-~~~~~~~~~~-~--------~~~v~~~~~~~~-~~~l~~~~~ 369 (513)
..+|... .|+.-..... . ...+..++++|. ...++.+..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 3444433 3332222111 1 112467899884 356666653
No 383
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=70.37 E-value=25 Score=35.37 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=30.2
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCcceeeecc
Q 010324 265 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE 303 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 303 (513)
..|.++.+. ..++++-+.|.++|+|++.+++++....
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 346666553 6799999999999999999999887765
No 384
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=69.33 E-value=1.1e+02 Score=31.56 Aligned_cols=161 Identities=11% Similarity=0.166 Sum_probs=83.0
Q ss_pred cccCeEEEEEccC-CCEEEEeeCCCcEEEEecCCCceeeEeccc-------ccceeEEEEccCC-CEEEEEeCCCc----
Q 010324 306 HSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEFRGH-------SSYVNDAIFTNDG-SRVVTASSDCT---- 372 (513)
Q Consensus 306 ~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~-~~l~~~~~dg~---- 372 (513)
....|.+++++|. ...+++++..+.|...+ ..|+.-..+..+ ...+.+++++|.. ..++.+..+..
T Consensus 13 ~~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 13 GGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 3468999999985 45677777777766554 234433333221 2368999999843 34444443211
Q ss_pred EEEE-eCCCCceeEeecCCCCCCC---CCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCc---cCCCcE
Q 010324 373 VKVW-DLKSTDCLQTFKPPPPLRG---GDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGK---REGGDF 445 (513)
Q Consensus 373 i~iw-d~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 445 (513)
-.|| ....|+.-.....+..... ....+..+++.|.++..++++...+.|+.=+=.|+.-....... .....+
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCE
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCe
Confidence 2233 3334443222222111100 11135567888876677777765554432222244333333211 112457
Q ss_pred EEEEECCC-CCEEEEEecC-ceEE
Q 010324 446 VAACVSPK-GEWIYCVGED-RNLY 467 (513)
Q Consensus 446 ~~~~~s~~-~~~l~~g~~d-g~i~ 467 (513)
..+.++|. +..++++..+ +.|+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEECTTSTTCEEEEESSTTCEE
T ss_pred EEEEECCCCCCEEEEEEcCCCeEE
Confidence 78888874 4566666654 4443
No 385
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=68.42 E-value=17 Score=27.85 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHhCch
Q 010324 72 KLEDLYEQIVLEMIELRELDTARAILRQTQA 102 (513)
Q Consensus 72 ~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~ 102 (513)
.+|.++-+.|+||+..+..++|..++.+..+
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~ 63 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRG 63 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhH
Confidence 3899999999999999999999999976543
No 386
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=67.97 E-value=93 Score=30.28 Aligned_cols=201 Identities=15% Similarity=0.210 Sum_probs=106.7
Q ss_pred cEEEEEcCCcceeeeccc-------ccccCeEEEEEccCCC-EEEEeeCCCc----------------------------
Q 010324 287 KIKVWRIRSGQCLRRLER-------AHSEGVTSLVFSRDGS-QILSTSFDST---------------------------- 330 (513)
Q Consensus 287 ~i~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~-~l~~~~~dg~---------------------------- 330 (513)
.|.+|++. |+.+..+.. .|...+....|.-||+ -+++.+.+|+
T Consensus 152 ~l~aY~ld-G~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEy 230 (591)
T 2zux_A 152 LIDAYKLD-GTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEY 230 (591)
T ss_dssp EEEEECTT-SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCE
T ss_pred EEEEEECC-CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcE
Confidence 46666664 554444431 1344566666766764 4666655654
Q ss_pred EEEEecCCCceeeEeccc--ccce---------------eEEEEc-cCCCEEEEEe---CCCcEEEEeCCCCceeEeecC
Q 010324 331 ARIHGLKSGKLLKEFRGH--SSYV---------------NDAIFT-NDGSRVVTAS---SDCTVKVWDLKSTDCLQTFKP 389 (513)
Q Consensus 331 i~i~d~~~~~~~~~~~~~--~~~v---------------~~~~~~-~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~ 389 (513)
+.++|=.+|+.+.++.-. .+.+ .++++- -+...++.+- ....+..||.+.++....+..
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~ 310 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL 310 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence 788888888877665421 1111 122221 1222333332 123488888877765433322
Q ss_pred CCCCC------C-CCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCCcEEEEEECCC--CCEEEEE
Q 010324 390 PPPLR------G-GDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPK--GEWIYCV 460 (513)
Q Consensus 390 ~~~~~------~-~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~g 460 (513)
..... + ....+.-..+.-++...++.++. ++|-+|..+..... .|...+....+.|+ |--++.+
T Consensus 311 d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD~dG~~L~st~~--gHGDa~hv~dldP~r~GlEv~~~ 383 (591)
T 2zux_A 311 DSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVDHDGKGMYSTGL--GHGDALHTGDLDPGRPGLEVFQV 383 (591)
T ss_dssp ETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTE-----EECTTSCEEEECSC--CCCSCEEEECCCTTSSSCEEEEE
T ss_pred cCCCCCcccccccCCCCCeeEeCCCCCCceEEEeee-----EECCCCCEeeeCCC--CCCCeeEEeecCCCCCCcEEEEE
Confidence 11110 1 01223333345556666666552 45555666555543 45666777777777 4567776
Q ss_pred ecCc----eEEEEECCCceeeEeeecc--cCCeEEEEEcCC
Q 010324 461 GEDR----NLYCFSHQSGKLEHLMKVH--EKDVIGVTHHPH 495 (513)
Q Consensus 461 ~~dg----~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~p~ 495 (513)
.+++ -..+.|..+|+.+...... .+......|.|+
T Consensus 384 ~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~ 424 (591)
T 2zux_A 384 HEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPR 424 (591)
T ss_dssp CCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTT
T ss_pred ecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCC
Confidence 6642 3556899999988776542 344444444454
No 387
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=64.42 E-value=88 Score=28.77 Aligned_cols=237 Identities=12% Similarity=0.105 Sum_probs=118.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCc-c----------eeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEE
Q 010324 266 TVLCIEFSRDSEMLASGSQDGKIKVWRIRSG-Q----------CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIH 334 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~~dg~i~vwd~~~~-~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 334 (513)
.|..++-. ....+.-..||.|..|-.... + ....+.......+..++.+....+.++-+.||.|+.|
T Consensus 54 ~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 34445432 345555667899999864321 1 1111211223345566777666777778889999999
Q ss_pred ecCCCc-----------eeeEeccc-ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCce------eEeecCCCCCCCC
Q 010324 335 GLKSGK-----------LLKEFRGH-SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDC------LQTFKPPPPLRGG 396 (513)
Q Consensus 335 d~~~~~-----------~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~ 396 (513)
-....- ....+... ...|..++.. ..+.++...+|.|..|-...... .....+.......
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 654211 11111111 1245555554 44666677899999996532110 0000000000011
Q ss_pred CceeeEEEecCCCCCeEEEEcCCCcEEEEEcc--Ce--------EEEEeecCccCCCcEEEEEECCCCCEEEEEecCceE
Q 010324 397 DASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQ--------VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNL 466 (513)
Q Consensus 397 ~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~--------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 466 (513)
...+..++..... ...++-..+|.|+.|-.. ++ ..............+..++.. ..+.++-..+|.|
T Consensus 210 ~~~v~~ia~G~g~-~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v 286 (389)
T 3kci_A 210 GHRVVDIACGSGD-AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAV 286 (389)
T ss_dssp TSCEEEEEECCSS-CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCE
T ss_pred CCeEEEEEEcCCC-cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeE
Confidence 2345555543322 566667788999999654 11 111111111112235555443 3455666789999
Q ss_pred EEEECCCc-e----------eeEeeec-ccCCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 467 YCFSHQSG-K----------LEHLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 467 ~iwd~~~~-~----------~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
+.|=.... + ....+.. ....|..++.. ....+....||.|..|
T Consensus 287 ~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 287 YTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred EEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence 99965321 0 0111111 12346666553 3344455678888887
No 388
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=64.23 E-value=27 Score=34.11 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=42.7
Q ss_pred ccEEEEEEcCCCCEEEEEeC------------CCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEee
Q 010324 265 ETVLCIEFSRDSEMLASGSQ------------DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS 326 (513)
Q Consensus 265 ~~v~~l~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 326 (513)
.....|.|.++|.+.+.... ...+..++..+|+....+.......++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 56788999999986663322 125666676677755444322346789999999999888764
No 389
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=63.83 E-value=50 Score=29.37 Aligned_cols=117 Identities=17% Similarity=0.222 Sum_probs=58.6
Q ss_pred cHHHHHHHhccCChhhHHhhhccccCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCchhhhhccCCHHHHHHHHHHhc
Q 010324 43 SIETFVADINSGRWDAILPQVAQLKLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEHLLV 122 (513)
Q Consensus 43 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~ll~ 122 (513)
.+.++++.|.+|++=||-+. ++-.+..++.+++..+|+.+|.+- ....+...+.....+|..++.
T Consensus 16 ~l~rl~~~I~~G~yYEAhQ~--------------~Rtl~~Ry~~~~~~~eAidlL~~g-a~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 16 TLQRFENKIKAGDYYEAHQT--------------LRTIANRYVRSKSYEHAIELISQG-ALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHHHHHHHHTCHHHHHHH--------------HHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccChHHHHHH--------------HHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHCCCcchHHHHHHHHH
Confidence 46678888888888777763 344455556666666666666432 111122233333334433332
Q ss_pred ccCCCccccccCChHHHHHHHHHHHHhcccccCChhHHHHHHHHHHhhhhhcCCCCCC
Q 010324 123 RTYFDAHEAYQDSTKERRRAQIAQAIAAEVSVVPPSRLMALIGQALKWQQHQGLLPPG 180 (513)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~rl~~l~~~~~~~q~~~~~~~~~ 180 (513)
......+... .+....++.+.+.. ++...|.| ..++..+++|....+..+.|
T Consensus 81 ev~~~~~~~~----~~~~~~rl~~l~~~-~p~~~~~r-~~fi~~ai~WS~~~g~~~~G 132 (312)
T 2wpv_A 81 EVYDLAEVKV----DDISVARLVRLIAE-LDPSEPNL-KDVITGMNNWSIKFSEYKFG 132 (312)
T ss_dssp HHHHHTTCCC----SHHHHHHHHHHHTT-CCTTCTTH-HHHHHHHHHHHHHTSSCTTC
T ss_pred HHHHHcCCCC----CHHHHHHHHHHHHH-CCCCCchH-HHHHHHHHHHHhhcCCCCCC
Confidence 2111111111 12234445444333 22223333 68889999999876554444
No 390
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=63.77 E-value=26 Score=34.53 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=42.3
Q ss_pred cEEEEEEcCCCCEEEEEeCC------------CcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEe
Q 010324 266 TVLCIEFSRDSEMLASGSQD------------GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST 325 (513)
Q Consensus 266 ~v~~l~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 325 (513)
..-.|+|+|.|.+++.-..+ ..+.+.+..+++..+-+.......++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 46789999999866554322 2355556667776555544456789999999999888765
No 391
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=63.69 E-value=22 Score=26.38 Aligned_cols=100 Identities=8% Similarity=0.100 Sum_probs=52.6
Q ss_pred HHHhhcChHHHHHHHHhhcCccccccccHHH-HHHHhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcCChHHH
Q 010324 16 QFCKENSLQQTFQTLQNECQVSLNTVDSIET-FVADINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELRELDTA 93 (513)
Q Consensus 16 q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~~-~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~~~~~a 93 (513)
.|++..-|.++...+++=-.+..+.+..... =.-....|+|++|+..+... .+.++.. ..+-..=.-+...++.++|
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~~~~~~A 100 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI-KGYIRKAACLVAMREWSKA 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHCCCHHHH
Confidence 3555667888888777643332222111111 11223458898888876654 3333322 2222223345667888889
Q ss_pred HHHHHhCchhhhhccCCHHHHHHHHH
Q 010324 94 RAILRQTQAMGVMKQEQPERYLRLEH 119 (513)
Q Consensus 94 ~~~lr~~~~~~~~~~~~~~~~~~l~~ 119 (513)
+..+++.+.. ...+++....|..
T Consensus 101 ~~~~~~al~l---~P~~~~a~~~l~~ 123 (126)
T 4gco_A 101 QRAYEDALQV---DPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHH---CcCCHHHHHHHHH
Confidence 8888765433 3444444444433
No 392
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=62.88 E-value=26 Score=34.55 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=43.3
Q ss_pred EEEEEECCCCCEEEEEecC------------ceEEEEECCCceeeEeeeccc-CCeEEEEEcCCCCEEEEE
Q 010324 445 FVAACVSPKGEWIYCVGED------------RNLYCFSHQSGKLEHLMKVHE-KDVIGVTHHPHRNLLATY 502 (513)
Q Consensus 445 ~~~~~~s~~~~~l~~g~~d------------g~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~ 502 (513)
.-.++|+|.|+++++-..+ +.+.+.+..++++...+.++. .+++.++|+||++.|...
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4578999999966655432 346677778888877777654 579999999999877655
No 393
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=62.49 E-value=39 Score=32.98 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=44.1
Q ss_pred CcEEEEEECCCCCEEEEEec------------CceEEEEECCCceeeEeeecc-cCCeEEEEEcCCCCEEEEE
Q 010324 443 GDFVAACVSPKGEWIYCVGE------------DRNLYCFSHQSGKLEHLMKVH-EKDVIGVTHHPHRNLLATY 502 (513)
Q Consensus 443 ~~~~~~~~s~~~~~l~~g~~------------dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~ 502 (513)
.....++|+++|.+.++... .+.|+.++..++++...+.+. ...++.++|+||++.|..+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 34568999999987764332 226888888888877766544 3578999999999877665
No 394
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=60.87 E-value=45 Score=24.26 Aligned_cols=25 Identities=4% Similarity=0.060 Sum_probs=13.9
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEecC
Q 010324 311 TSLVFSRDGSQILSTSFDSTARIHGLK 337 (513)
Q Consensus 311 ~~~~~~~~~~~l~~~~~dg~i~i~d~~ 337 (513)
..+.+..+|++++... ++.+ +|...
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~ 83 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSN 83 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECS
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECC
Confidence 3466677777666533 3443 66643
No 395
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.56 E-value=22 Score=38.53 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=31.7
Q ss_pred CeEEEEEccCCCEEEEeeCCCcEEEEecCCCceeeEec
Q 010324 309 GVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR 346 (513)
Q Consensus 309 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 346 (513)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556667788899999999999999999999887754
No 396
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=59.49 E-value=11 Score=29.11 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=41.2
Q ss_pred ChhhHHHHHHHHHhhcCh-----HHHHHHHHhhcCccccccccH---------HHHHHHhccCChhhHHhhhcc
Q 010324 6 EARDVIKIVLQFCKENSL-----QQTFQTLQNECQVSLNTVDSI---------ETFVADINSGRWDAILPQVAQ 65 (513)
Q Consensus 6 ~~~e~~~li~q~L~~~G~-----~~t~~~L~~Esg~~~~~~~~~---------~~~~~~i~~g~w~~~~~~l~~ 65 (513)
++++++. +.+.|.++|| ..|+..| +|.|++.+....+ ..+...|.+|+.+-+++.-..
T Consensus 35 dK~~l~~-~a~~l~~lGf~i~AT~GTa~~L-~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~ 106 (143)
T 2yvq_A 35 FRPRFLG-VAEQLHNEGFKLFATEATSDWL-NANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNN 106 (143)
T ss_dssp GHHHHHH-HHHHHHTTTCEEEEEHHHHHHH-HHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCC
T ss_pred chHHHHH-HHHHHHHCCCEEEECchHHHHH-HHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCC
Confidence 3566666 5668999999 5888888 5689877532211 237778999999988885544
No 397
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=57.84 E-value=46 Score=29.14 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhhcC-hHHHHHHHHhh--cCccccccccHHHH--HHHhccCChhhHHhhhccccCChhhHHHHHHHHHHH
Q 010324 9 DVIKIVLQFCKENS-LQQTFQTLQNE--CQVSLNTVDSIETF--VADINSGRWDAILPQVAQLKLPRNKLEDLYEQIVLE 83 (513)
Q Consensus 9 e~~~li~q~L~~~G-~~~t~~~L~~E--sg~~~~~~~~~~~~--~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~le 83 (513)
+.++++.+++...| +.++...|++- .++..+.+. +... .-....|++++|+..+.. +.+. ..+-....-
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~-~~~~la~~~~~~g~~~~Al~~l~~---~~~~--~~~~~l~~~ 139 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT-FLLMAASIYFYDQNPDAALRTLHQ---GDSL--ECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHH-HHHHHHHHHHHTTCHHHHHHHHTT---CCSH--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHH-HHHHHHHHHHHCCCHHHHHHHHhC---CCCH--HHHHHHHHH
Confidence 45667777777665 67777777652 232222111 1111 223456888888887777 2222 112222223
Q ss_pred HHHcCChHHHHHHHHhC
Q 010324 84 MIELRELDTARAILRQT 100 (513)
Q Consensus 84 ~l~~~~~~~a~~~lr~~ 100 (513)
++..++.++|...+++.
T Consensus 140 ~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 55677788887777654
No 398
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=51.71 E-value=21 Score=27.72 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHhCc
Q 010324 71 NKLEDLYEQIVLEMIELRELDTARAILRQTQ 101 (513)
Q Consensus 71 ~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~ 101 (513)
..+|.++-+.|+||+..+ .++|..++.+..
T Consensus 34 ~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~ 63 (148)
T 2j49_A 34 YIMYPIFIYLFLNLVAKN-PVYARRFFDRFS 63 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHh
Confidence 348999999999999999 999999997643
No 399
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=50.63 E-value=55 Score=24.92 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=47.6
Q ss_pred HHHHHHhhcChHHHHHHHHhhcCccccccccHHHH-HHHhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcCCh
Q 010324 13 IVLQFCKENSLQQTFQTLQNECQVSLNTVDSIETF-VADINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELREL 90 (513)
Q Consensus 13 li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~~~-~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~~~ 90 (513)
+-..++...-|.++...+++=-....+.+.....+ .-....|+|++|+..+... .+.++... .+-..=.-+...++.
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR-FPFHAAECLLQXGEL 105 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-HHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHcCCH
Confidence 33444555667777777765433322221111111 2234569999998877664 33222211 111122235677888
Q ss_pred HHHHHHHHhCchh
Q 010324 91 DTARAILRQTQAM 103 (513)
Q Consensus 91 ~~a~~~lr~~~~~ 103 (513)
++|+..+++.+..
T Consensus 106 ~~A~~~~~~al~~ 118 (148)
T 2vgx_A 106 AEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888765443
No 400
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=49.48 E-value=2.3e+02 Score=28.94 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=77.3
Q ss_pred CCccEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCcceeeecccc-----------cccCeEEEEEcc-CCCEEEEeeCC-
Q 010324 263 HDETVLCIEFSRDS-EMLASGSQDGKIKVWRIRSGQCLRRLERA-----------HSEGVTSLVFSR-DGSQILSTSFD- 328 (513)
Q Consensus 263 h~~~v~~l~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~~v~~~~~~~-~~~~l~~~~~d- 328 (513)
-.+.|.+|+++|.+ ..++.+...|.|...+ ..|+.-..+... ....+.++++.| +.+.++++...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45789999999965 5666666666654443 334433333211 234689999988 34455444321
Q ss_pred ----CcEEEEe-cCCCceeeEeccc-------ccc--eeEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeEeecCCCCC
Q 010324 329 ----STARIHG-LKSGKLLKEFRGH-------SSY--VNDAIFTND-GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPL 393 (513)
Q Consensus 329 ----g~i~i~d-~~~~~~~~~~~~~-------~~~--v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 393 (513)
....||. ...|+.-...... .+. ...++++|. ...+.+++.++.|. .....|+.-.........
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTTSCCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccccCccc
Confidence 1123333 2334322222110 111 246888874 34555555544333 222333322222111100
Q ss_pred CCCCceeeEEEecCCCCCeEEEEcCCC
Q 010324 394 RGGDASVNSVHLFPKNPDHIVVCNKTS 420 (513)
Q Consensus 394 ~~~~~~v~~~~~~~~~~~~l~~~~~~~ 420 (513)
......+..+.+.|.++..++++..++
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 111235678889887766666666655
No 401
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=45.90 E-value=78 Score=23.58 Aligned_cols=90 Identities=11% Similarity=0.081 Sum_probs=44.1
Q ss_pred HHHHHHhhcChHHHHHHHHhhcCccccccccHHH-HHHHhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcCCh
Q 010324 13 IVLQFCKENSLQQTFQTLQNECQVSLNTVDSIET-FVADINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELREL 90 (513)
Q Consensus 13 li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~~-~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~~~ 90 (513)
+-..++...-|.++...+++=.....+.+..... =.-....|++++|+..+... .+.++... .+-..-.-+...++.
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR-FPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH-HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHcCCH
Confidence 3344455566777777766543332222111111 11234568888888876654 22222111 111122234567888
Q ss_pred HHHHHHHHhCchh
Q 010324 91 DTARAILRQTQAM 103 (513)
Q Consensus 91 ~~a~~~lr~~~~~ 103 (513)
++|+..+++....
T Consensus 103 ~~A~~~~~~al~~ 115 (142)
T 2xcb_A 103 DGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888777654433
No 402
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=45.85 E-value=80 Score=22.61 Aligned_cols=92 Identities=12% Similarity=0.024 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhcChHHHHHHHHhhcCccccccc--cH--HHHHHHhccCChhhHHhhhccc-cC-Chhh-HHHHHHHHHH
Q 010324 10 VIKIVLQFCKENSLQQTFQTLQNECQVSLNTVD--SI--ETFVADINSGRWDAILPQVAQL-KL-PRNK-LEDLYEQIVL 82 (513)
Q Consensus 10 ~~~li~q~L~~~G~~~t~~~L~~Esg~~~~~~~--~~--~~~~~~i~~g~w~~~~~~l~~~-~~-~~~~-~~~~~~~~~l 82 (513)
...+-..++...-|.++...+++=-....+++. .. ..=......|+|++|+..+... .. |+.. ....+-..-.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344555666677788888877764332222210 01 1122345679999999987765 22 2221 1111222222
Q ss_pred HHHHcCChHHHHHHHHhCc
Q 010324 83 EMIELRELDTARAILRQTQ 101 (513)
Q Consensus 83 e~l~~~~~~~a~~~lr~~~ 101 (513)
-+...++.++|...+++..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3456788999988887543
No 403
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=41.33 E-value=3e+02 Score=27.92 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=53.4
Q ss_pred eeEEEecCCCCCeEEEEcCCCcEEEE-Ecc-----CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCc-eEEEEECC
Q 010324 400 VNSVHLFPKNPDHIVVCNKTSSIYIM-TLQ-----GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR-NLYCFSHQ 472 (513)
Q Consensus 400 v~~~~~~~~~~~~l~~~~~~~~i~i~-d~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd~~ 472 (513)
...+.+.|.++..++.++ ++.|+.- |.. +.....+.........+..+...|.+..|+++..|. .++--|+.
T Consensus 385 ~~~l~idp~~~~~~~~g~-~~g~~~s~d~g~w~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~l~~~~~d~g~~~~~d~~ 463 (737)
T 2cn3_A 385 IGDIEIDPFNSDRMMYVT-GATIYGCDNLTDWDRGGKVKIEVKATGIEECAVLDLVSPPEGAPLVSAVGDLVGFVHDDLK 463 (737)
T ss_dssp CCCEEECTTCTTCEEEEC-SSCEEEESCGGGGGGTCCEEEEECCTTCBCCBEEEEECCSSSCSEEEEETTTBCCEESSTT
T ss_pred cccEEECCCCCCcEEEeC-CCeEEeecCCCccccCCceeEEEcCCCceeeeeeeEEcCCCCCeeEEEEeccCCeEEcccc
Confidence 567899999888888875 4455432 221 111112111111233455566677777777776554 33333333
Q ss_pred CceeeEeeecccCCeEEEEEcCCC--CEEEEEECCCe
Q 010324 473 SGKLEHLMKVHEKDVIGVTHHPHR--NLLATYGEDCT 507 (513)
Q Consensus 473 ~~~~~~~~~~h~~~v~~~~~~p~~--~~l~s~~~dg~ 507 (513)
+.... .+........++++.... .+++++..|+.
T Consensus 464 ~~~~~-~~~~~~~~~~~i~~ag~~~~~~v~vG~~dg~ 499 (737)
T 2cn3_A 464 VGPKK-MHVPSYSSGTGIDYAELVPNFMALVAKADLY 499 (737)
T ss_dssp SCCSS-CSCTTCSEEEEEEEETTEEEEEEEEEECSSC
T ss_pred cCCcc-ccCCccccccceeecccCCCeEEEEECcCCC
Confidence 32111 112223345677776542 35556665553
No 404
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=40.04 E-value=3.1e+02 Score=27.71 Aligned_cols=36 Identities=22% Similarity=0.601 Sum_probs=29.3
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeecC
Q 010324 352 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP 389 (513)
Q Consensus 352 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 389 (513)
|.++.+ +..++++-+.|+++|+||+++++++.+...
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 444443 467999999999999999999998887665
No 405
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=38.52 E-value=9.1 Score=24.58 Aligned_cols=19 Identities=5% Similarity=0.401 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHhhcChHH
Q 010324 7 ARDVIKIVLQFCKENSLQQ 25 (513)
Q Consensus 7 ~~e~~~li~q~L~~~G~~~ 25 (513)
..|++.||.+.|+.+||++
T Consensus 62 akelleliarllqklgykd 80 (96)
T 2jvf_A 62 AKELLELIARLLQKLGYKD 80 (96)
T ss_dssp HHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 3589999999999999974
No 406
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=38.27 E-value=1.1e+02 Score=21.85 Aligned_cols=92 Identities=7% Similarity=0.034 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhhcChHHHHHHHHhhcCccccccccHHH-HHHHhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHH
Q 010324 9 DVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIET-FVADINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIE 86 (513)
Q Consensus 9 e~~~li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~~-~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~ 86 (513)
....+-..++...-|.++...+++-.....+....... -.-....|+|++|+..+... ...+.. ...+-..-.-+..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~ 96 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHH
Confidence 34455555666677888888777755443332121111 12234578999999877664 222221 1122222223456
Q ss_pred cCChHHHHHHHHhCc
Q 010324 87 LRELDTARAILRQTQ 101 (513)
Q Consensus 87 ~~~~~~a~~~lr~~~ 101 (513)
.++.++|+..+++..
T Consensus 97 ~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 97 MKDYTKAMDVYQKAL 111 (133)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 788899988886543
No 407
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=37.96 E-value=38 Score=25.57 Aligned_cols=32 Identities=9% Similarity=0.308 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHhhcChH-HHHHHHHhhcCcccc
Q 010324 8 RDVIKIVLQFCKENSLQ-QTFQTLQNECQVSLN 39 (513)
Q Consensus 8 ~e~~~li~q~L~~~G~~-~t~~~L~~Esg~~~~ 39 (513)
.++...|+..|.+.||- .+...+.++-|+..+
T Consensus 22 ~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~ 54 (130)
T 2k9m_A 22 QELALELLNYLNEKGFLSKSVEEISDVLRCSVE 54 (130)
T ss_dssp HHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH
Confidence 44666777778889995 445566666666444
No 408
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=37.88 E-value=1.9e+02 Score=24.68 Aligned_cols=149 Identities=9% Similarity=0.059 Sum_probs=78.8
Q ss_pred CEEEEeeCCCcEEEEecCCCce-eeEecccccceeEEEEccCCCEEEEEeCCCcEEEEeCCC---CceeE-eecCCCCCC
Q 010324 320 SQILSTSFDSTARIHGLKSGKL-LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS---TDCLQ-TFKPPPPLR 394 (513)
Q Consensus 320 ~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~-~~~~~~~~~ 394 (513)
..+++.+.+|.|+--....... ...++.. ..+..+........++..+..|.++-+.... ++... .+.....+
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L- 80 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL- 80 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCC-
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecC-
Confidence 3456677788877655432111 1122322 3344444444445677778888876654422 11100 01001111
Q ss_pred CCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe------EEEEeecCccCCCcEEEEEEC-CCCCEEEEEecCceEE
Q 010324 395 GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ------VVKSFSSGKREGGDFVAACVS-PKGEWIYCVGEDRNLY 467 (513)
Q Consensus 395 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~g~~dg~i~ 467 (513)
..+..|.++.... ....++.++..|.++...+..- ....+.. . ....+..+... .++..++..+.+|.+.
T Consensus 81 ~~~e~Iv~~~~~~-~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L-~-~~d~lv~~~~~~~~~~~i~l~T~~G~~l 157 (256)
T 1zvt_A 81 PPGATVDHMLMES-DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL-P-ENAHVMPPVVIEDASDMLLAITQAGRML 157 (256)
T ss_dssp CTTCCEEEEECCC-TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCC-C-TTCCBCCCEECCCTTCEEEEEETTSEEE
T ss_pred CCCCEEEEEEEeC-CCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEE-C-CCCEEEEEEEecCCCCEEEEEcCCCeEE
Confidence 1234566664433 3467888999999999887421 1111111 1 22345554454 3566888999999998
Q ss_pred EEECCC
Q 010324 468 CFSHQS 473 (513)
Q Consensus 468 iwd~~~ 473 (513)
.++...
T Consensus 158 rf~~~e 163 (256)
T 1zvt_A 158 MFPVSD 163 (256)
T ss_dssp EEEGGG
T ss_pred EEEHHH
Confidence 888753
No 409
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=37.59 E-value=3.3e+02 Score=27.35 Aligned_cols=74 Identities=12% Similarity=0.179 Sum_probs=45.0
Q ss_pred cceeEEEEccCCCEEEEEeCCCcEEEEeCCCCcee-----EeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEE
Q 010324 350 SYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCL-----QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYI 424 (513)
Q Consensus 350 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i 424 (513)
..|..+....++.+++.++..|.++...+...... ..+. + .....+..+....++...++..+.+|....
T Consensus 554 e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~----L-~~~d~lv~~~~~~~~~~~v~l~t~~g~~lr 628 (716)
T 1zvu_A 554 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALIT----L-PENAHVMPPVVIEDASDMLLAITQAGRMLM 628 (716)
T ss_dssp CCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBC----C-CTTCCBCCCEECCCTTCEEEEEETTSEEEE
T ss_pred CeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEe----e-CCCCEEEEEEEecCCCCEEEEEeCCCeEEE
Confidence 34555544446778999999999998876532211 1111 1 112334444444334467888899999888
Q ss_pred EEcc
Q 010324 425 MTLQ 428 (513)
Q Consensus 425 ~d~~ 428 (513)
+...
T Consensus 629 f~~~ 632 (716)
T 1zvu_A 629 FPVS 632 (716)
T ss_dssp EEST
T ss_pred EEHH
Confidence 8875
No 410
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=36.85 E-value=2e+02 Score=24.58 Aligned_cols=145 Identities=11% Similarity=0.094 Sum_probs=79.4
Q ss_pred CEEEEEeCCCcEEEEEcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecC---C----Cceee---Eec
Q 010324 277 EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK---S----GKLLK---EFR 346 (513)
Q Consensus 277 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~----~~~~~---~~~ 346 (513)
...++.+.+|.|+--....-. ...+.......+..+........++..+..|.++-.... . |..+. .+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~-~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDID-APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCC-STTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCC-ceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 345667788888766543211 111111234455555555555677777888886665432 2 22111 122
Q ss_pred ccccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCce-----eEeecCCCCCCCCCceeeEEEecCCCCCeEEEEcCCCc
Q 010324 347 GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDC-----LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 421 (513)
Q Consensus 347 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 421 (513)
....|.++....++.+++.++..|.++...+..... ...+.. . ....+..+...+++...++..+.+|.
T Consensus 82 -~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L----~-~~d~lv~~~~~~~~~~~i~l~T~~G~ 155 (256)
T 1zvt_A 82 -PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL----P-ENAHVMPPVVIEDASDMLLAITQAGR 155 (256)
T ss_dssp -TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCC----C-TTCCBCCCEECCCTTCEEEEEETTSE
T ss_pred -CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEE----C-CCCEEEEEEEecCCCCEEEEEcCCCe
Confidence 234566664434567788999999999987743211 111111 1 12334444444223367888888998
Q ss_pred EEEEEcc
Q 010324 422 IYIMTLQ 428 (513)
Q Consensus 422 i~i~d~~ 428 (513)
+..+...
T Consensus 156 ~lrf~~~ 162 (256)
T 1zvt_A 156 MLMFPVS 162 (256)
T ss_dssp EEEEEGG
T ss_pred EEEEEHH
Confidence 8888875
No 411
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=36.62 E-value=2.1e+02 Score=27.03 Aligned_cols=16 Identities=6% Similarity=-0.018 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHhhcCh
Q 010324 8 RDVIKIVLQFCKENSL 23 (513)
Q Consensus 8 ~e~~~li~q~L~~~G~ 23 (513)
-|++.|+.+.|.+.|+
T Consensus 163 aEvi~l~~~~l~~lgl 178 (456)
T 3lc0_A 163 VELVCAACWAMRSLGL 178 (456)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 5899999999999997
No 412
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=36.53 E-value=96 Score=22.23 Aligned_cols=91 Identities=8% Similarity=0.044 Sum_probs=49.8
Q ss_pred HHHHHHHHhhcChHHHHHHHHhhcCccccccccHH-HHHHHhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcC
Q 010324 11 IKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIE-TFVADINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELR 88 (513)
Q Consensus 11 ~~li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~-~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~ 88 (513)
..+-..++...-|.++...+++--.+.-+.+.... .=.-....|+|++|+..+... .+.++.. ..+-..-.-+...+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV-RAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHh
Confidence 33444556667788888877765443322211111 111234569999999877664 3333221 22222233455678
Q ss_pred ChHHHHHHHHhCch
Q 010324 89 ELDTARAILRQTQA 102 (513)
Q Consensus 89 ~~~~a~~~lr~~~~ 102 (513)
+..+|+..+++...
T Consensus 87 ~~~~A~~~~~~al~ 100 (126)
T 3upv_A 87 EYASALETLDAART 100 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88999888876543
No 413
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=34.90 E-value=1.1e+02 Score=21.03 Aligned_cols=89 Identities=8% Similarity=0.045 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcChHHHHHHHHhhcCccccccccHH-HHHHHhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcC
Q 010324 11 IKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIE-TFVADINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELR 88 (513)
Q Consensus 11 ~~li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~-~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~ 88 (513)
..+...++...-|.++...+++=-....+.+.... .=.-....|+|++|+..+... ...+.. ...+-..-.-+...+
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHh
Confidence 44455556667777777777764333222211111 112234568999988877664 222221 112222222345678
Q ss_pred ChHHHHHHHHhC
Q 010324 89 ELDTARAILRQT 100 (513)
Q Consensus 89 ~~~~a~~~lr~~ 100 (513)
+..+|...+++.
T Consensus 87 ~~~~A~~~~~~~ 98 (118)
T 1elw_A 87 RFEEAKRTYEEG 98 (118)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 888888887654
No 414
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.02 E-value=31 Score=23.71 Aligned_cols=22 Identities=5% Similarity=0.223 Sum_probs=18.2
Q ss_pred HHHHHhhcChHHHHHHHHhhcCc
Q 010324 14 VLQFCKENSLQQTFQTLQNECQV 36 (513)
Q Consensus 14 i~q~L~~~G~~~t~~~L~~Esg~ 36 (513)
+..||++.||.+ ++.|-++..+
T Consensus 27 VadWLkk~g~~~-cd~lv~Kh~I 48 (90)
T 2eap_A 27 LADYFKKLNYKD-CEKAVKKYHI 48 (90)
T ss_dssp HHHHHHHTTCHH-HHHHHHHTTC
T ss_pred HHHHHHHcCCch-HHHHHHHhcc
Confidence 578999999999 8999766654
No 415
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=33.62 E-value=25 Score=24.38 Aligned_cols=18 Identities=0% Similarity=0.372 Sum_probs=15.5
Q ss_pred cccChhhHHHHHHHHHhh
Q 010324 3 LEIEARDVIKIVLQFCKE 20 (513)
Q Consensus 3 ~~~~~~e~~~li~q~L~~ 20 (513)
|..+++++...|+|||+.
T Consensus 15 ~~~skKrLA~sIIdFL~~ 32 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSS 32 (92)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 566788999999999986
No 416
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.17 E-value=1.4e+02 Score=21.74 Aligned_cols=91 Identities=9% Similarity=0.012 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhcChHHHHHHHHhhcCccccc---cccH-HHHHHHhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHH
Q 010324 10 VIKIVLQFCKENSLQQTFQTLQNECQVSLNT---VDSI-ETFVADINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEM 84 (513)
Q Consensus 10 ~~~li~q~L~~~G~~~t~~~L~~Esg~~~~~---~~~~-~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~ 84 (513)
...+-..++...-|.++...+++--...-+. .... ..=......|+|++|+..+... .+.+.. ...+-..-.-+
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~ 109 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VKALYRRSQAL 109 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HHHHHHHHHHH
Confidence 3344445555667777777777654443221 0101 0112234568999888877654 222221 11222222234
Q ss_pred HHcCChHHHHHHHHhCc
Q 010324 85 IELRELDTARAILRQTQ 101 (513)
Q Consensus 85 l~~~~~~~a~~~lr~~~ 101 (513)
...++.++|+..+++..
T Consensus 110 ~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 110 EKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55688888888886543
No 417
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=33.15 E-value=13 Score=26.86 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=20.4
Q ss_pred HHHHHhhcCccccccccHHHHHHHhccCChhhHHhhhcc
Q 010324 27 FQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVAQ 65 (513)
Q Consensus 27 ~~~L~~Esg~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~ 65 (513)
+..+=+|||++...-+ +-. +.+|+|+++.+.++.
T Consensus 38 ~i~vi~~sGL~y~~~p----mgT-~IEGe~devm~vvk~ 71 (106)
T 1vk8_A 38 AIEKISSWGMKYEVGP----SNT-TVEGEFEEIMDRVKE 71 (106)
T ss_dssp HHHHHHTTCSCEEECS----SCE-EEEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEeCC----Ccc-EEEcCHHHHHHHHHH
Confidence 3344457998776312 111 456999998885444
No 418
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=33.05 E-value=1.4e+02 Score=22.47 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=41.8
Q ss_pred hccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCchhhhhccCCHHHHHHHHHHh
Q 010324 51 INSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEHLL 121 (513)
Q Consensus 51 i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~ll 121 (513)
...|+|++|+..+... .+.++. ...+...-.-+...++.++|+..+++.+.. ...+++.+..+..++
T Consensus 42 ~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 42 YEAKEYDLAKKYICTYINVQERD-PKAHRFLGLLYELEENTDKAVECYRRSVEL---NPTQKDLVLKIAELL 109 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCchHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 4569999999988765 333322 222223333355678999999888765443 445566666665554
No 419
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=32.82 E-value=81 Score=21.31 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=28.6
Q ss_pred HHhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCc
Q 010324 49 ADINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQ 101 (513)
Q Consensus 49 ~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~ 101 (513)
.....|+|++|+..+... ...++.....+-..=.-+...++..+|+..+++..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345568888888776654 22221111022222223456788888888876543
No 420
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=32.80 E-value=2.1e+02 Score=24.62 Aligned_cols=82 Identities=11% Similarity=0.004 Sum_probs=36.5
Q ss_pred HHhhcChHHHHHHHHhhcCccccccccHH-HHHHHhccCChhhHHhhhcccc-CChhhHHHHHHHHHHHHHHcCChHHHH
Q 010324 17 FCKENSLQQTFQTLQNECQVSLNTVDSIE-TFVADINSGRWDAILPQVAQLK-LPRNKLEDLYEQIVLEMIELRELDTAR 94 (513)
Q Consensus 17 ~L~~~G~~~t~~~L~~Esg~~~~~~~~~~-~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~le~l~~~~~~~a~ 94 (513)
++....|.++...+++=-....+++...- .=+-.+..|++++|+..+.... ..++.. ...-..-+++.+.++...|.
T Consensus 127 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~~~~~~l~~~~~~~~a~ 205 (287)
T 3qou_A 127 LMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR-YQGLVAQIELLXQAADTPEI 205 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH-HHHHHHHHHHHHHHTSCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH-HHHHHHHHHHHhhcccCccH
Confidence 34444555555555543333222211111 1122345677777777777662 222211 11222223444555555565
Q ss_pred HHHHh
Q 010324 95 AILRQ 99 (513)
Q Consensus 95 ~~lr~ 99 (513)
..+++
T Consensus 206 ~~l~~ 210 (287)
T 3qou_A 206 QQLQQ 210 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 421
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=32.66 E-value=26 Score=27.57 Aligned_cols=32 Identities=13% Similarity=0.228 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHhhcChHHHHH-----HHHhhcCccc
Q 010324 7 ARDVIKIVLQFCKENSLQQTFQ-----TLQNECQVSL 38 (513)
Q Consensus 7 ~~e~~~li~q~L~~~G~~~t~~-----~L~~Esg~~~ 38 (513)
.++..+-|++||+..||...+. -++.|||+..
T Consensus 14 ~~~~a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~nP 50 (159)
T 3ct5_A 14 MKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINP 50 (159)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCc
Confidence 3566788999999999998765 4899999644
No 422
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=31.90 E-value=27 Score=17.33 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHhh
Q 010324 8 RDVIKIVLQFCKE 20 (513)
Q Consensus 8 ~e~~~li~q~L~~ 20 (513)
+||++||-||-++
T Consensus 5 kDvlql~qQy~qs 17 (26)
T 1kdl_A 5 KDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH
Confidence 5788888888654
No 423
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=31.41 E-value=20 Score=24.45 Aligned_cols=33 Identities=6% Similarity=0.042 Sum_probs=27.5
Q ss_pred cChhhHHHHHHHHHhhcChHHHHHHHHhhcCcccc
Q 010324 5 IEARDVIKIVLQFCKENSLQQTFQTLQNECQVSLN 39 (513)
Q Consensus 5 ~~~~e~~~li~q~L~~~G~~~t~~~L~~Esg~~~~ 39 (513)
++-.++.+-|+++|++.| -|+..|.++-|++-.
T Consensus 13 ~~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 13 RSNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp CCSHHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred cchHHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 355678888999999999 899999999998554
No 424
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.82 E-value=19 Score=22.24 Aligned_cols=23 Identities=4% Similarity=-0.042 Sum_probs=18.4
Q ss_pred ccChhhHHHHHHHHHhhcChHHH
Q 010324 4 EIEARDVIKIVLQFCKENSLQQT 26 (513)
Q Consensus 4 ~~~~~e~~~li~q~L~~~G~~~t 26 (513)
.+..+|...-.++-|.|+||.+.
T Consensus 2 ~~~~ee~~a~~L~~L~eMGF~D~ 24 (54)
T 2cp8_A 2 SSGSSGQTAALMAHLFEMGFCDR 24 (54)
T ss_dssp CCSSCTTHHHHHHHHHHHTCCCH
T ss_pred CCCHHHhhHHHHHHHHHcCCCcH
Confidence 35677888888999999999654
No 425
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=30.21 E-value=2.8e+02 Score=26.48 Aligned_cols=89 Identities=7% Similarity=0.034 Sum_probs=49.2
Q ss_pred HHHHHHHHhhcChHHHHHHHHh--hcCccccccccHHHHHHHhccCChhhHHhhhccc---cCC-hhhHHHHHHHHHHHH
Q 010324 11 IKIVLQFCKENSLQQTFQTLQN--ECQVSLNTVDSIETFVADINSGRWDAILPQVAQL---KLP-RNKLEDLYEQIVLEM 84 (513)
Q Consensus 11 ~~li~q~L~~~G~~~t~~~L~~--Esg~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~---~~~-~~~~~~~~~~~~le~ 84 (513)
+-||--|.+...+.++...|++ +.|+..+...=-.-+......|++++|++++..+ ++. +...|.. .+--+
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~---Li~~~ 185 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAA---LLKVS 185 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHH---HHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHH---HHHHH
Confidence 3455555555556666666553 5676554311111244556678888888877666 222 2222222 22234
Q ss_pred HHcCChHHHHHHHHhCch
Q 010324 85 IELRELDTARAILRQTQA 102 (513)
Q Consensus 85 l~~~~~~~a~~~lr~~~~ 102 (513)
...++.++|+.+|++...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHH
Confidence 567888888888876543
No 426
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=29.97 E-value=64 Score=22.30 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=28.8
Q ss_pred hccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCch
Q 010324 51 INSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQA 102 (513)
Q Consensus 51 i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~ 102 (513)
...|+|++|+..+... .+.++.. ..+-..-.-+...++.++|+..+++.+.
T Consensus 18 ~~~g~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 18 LKHDNASRALALFEELVETDPDYV-GTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3468888888877664 2222211 1222222334567888888888876543
No 427
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=29.18 E-value=97 Score=22.35 Aligned_cols=53 Identities=9% Similarity=0.058 Sum_probs=30.1
Q ss_pred HHHhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCc
Q 010324 48 VADINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQ 101 (513)
Q Consensus 48 ~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~ 101 (513)
...+..|+|++|+..+... ...++... .+-..=.-+...++..+|+..+++..
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al 78 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPEREE-AWRSLGLTQAENEKDGLAIIALNHAR 78 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456678888888877664 22222211 11122223456788888888876543
No 428
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=28.76 E-value=3.7e+02 Score=25.27 Aligned_cols=154 Identities=10% Similarity=0.090 Sum_probs=0.0
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCC-----ceeEeecCCCCCCCCCceeeEEEecCC--------CCCeEEEEcCCC
Q 010324 354 DAIFTNDGSRVVTASSDCTVKVWDLKST-----DCLQTFKPPPPLRGGDASVNSVHLFPK--------NPDHIVVCNKTS 420 (513)
Q Consensus 354 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~l~~~~~~~ 420 (513)
...++ +..+....+.+. +.||..... ..-+.+..+..-..+.....++.+.+. .+..+++.. +|
T Consensus 42 sg~i~-~~GyAlvv~~~~-l~VW~y~~~~~~~~~~c~~lpLp~sd~~~~~~lvsi~~~~~~~~~~s~~~pGlliVsp-tG 118 (450)
T 1xks_A 42 TINID-EGGWACLVCKEK-LIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATR-EG 118 (450)
T ss_dssp EEEEC-TTSEEEEEETTE-EEEEECCSSCCGGGCCEEEEECCCCSSCCCGGGEEEEECC-------CTTEEEEEECT-TC
T ss_pred EEEEC-CCcEEEEEeCCe-EEEEeecCCCCCCcccceeccCCccccccCCcEEEEEcCCCccccccCCCceEEEEcC-Cc
Q ss_pred cEEEEEccCeEEEEeecCccCCC-cEEEEEECCCCCEEEEEecCceEEEEECCCceeeEeeecccCCe------------
Q 010324 421 SIYIMTLQGQVVKSFSSGKREGG-DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDV------------ 487 (513)
Q Consensus 421 ~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v------------ 487 (513)
.|+.|.--...-........-.+ .........+..-++.+...|++....++ |++.-..+.-..+-
T Consensus 119 ~VryWesIs~~~~~~ei~~~L~~~E~vt~l~n~epaGfIlaTStgrl~~lsir-Gkp~l~~~~l~~~~G~l~gi~~~~sS 197 (450)
T 1xks_A 119 SIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIPE-SSGKIHQHILPQGQGMLSGIGRKVSS 197 (450)
T ss_dssp EEEEESCTTCTTCCEEEECC----CCEEEEEEETTTEEEEEETTCCEEEEEEC-TTSCEEEEECTTCCCC----------
T ss_pred cEEEccccCCCCceEEEEecCCCCceEEEEeecCCceEEEEeccceEEEEEec-CCceEEEEEecCCCcccccccccccc
Q ss_pred -------------EEEEEcCCCCEEEEEECCCeEEecc
Q 010324 488 -------------IGVTHHPHRNLLATYGEDCTMKLWK 512 (513)
Q Consensus 488 -------------~~~~~~p~~~~l~s~~~dg~i~iWd 512 (513)
.++.++..++.+++.+..+ +..|+
T Consensus 198 l~G~~s~~~~ia~v~~~~~~g~r~v~ilT~~~-lq~W~ 234 (450)
T 1xks_A 198 LFGILSPSSDLTLSSVLWDRERSSFYSLTSSN-ISKWE 234 (450)
T ss_dssp --------CCCCEEEEEEETTTTEEEEEESSE-EEEEE
T ss_pred cccccCCCcceEEEEeccCCCcEEEEEEcCCc-eEEEE
No 429
>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus}
Probab=28.75 E-value=3.4e+02 Score=24.75 Aligned_cols=81 Identities=12% Similarity=0.147 Sum_probs=53.1
Q ss_pred ccCCCEEEEEe-CCC--cEEEEeCCCCceeEeecCCCCCCCCCceee-EEEecCCCCCeEEEEcCCCcEEEEEccCeEEE
Q 010324 358 TNDGSRVVTAS-SDC--TVKVWDLKSTDCLQTFKPPPPLRGGDASVN-SVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVK 433 (513)
Q Consensus 358 ~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 433 (513)
+++..+|+.-. ... .|.++|+.+++....+.....-...-+.+. ++.....+ .+++++.....|.++|..|..+.
T Consensus 36 ~~~k~yL~~~N~~~~~~~i~~iDL~~~kl~k~i~~ekEGPNgi~~~~~~~~i~~~D-sI~i~~~~~~~i~l~n~~G~~~~ 114 (369)
T 3s9j_A 36 ENGKEYLHFENTQKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSPDSQ-YILVAQNNISRLSSINSQGEIIR 114 (369)
T ss_dssp ETTEEEEEEEECSTTCCEEEEEETTTTEEEEEEECBSSSTTBCTTCCCEEESSSTT-SEEEEEGGGTEEEEECTTCCEEE
T ss_pred cCCcEEEEEeCCCCCcCcEEEEECCCCceeeeeccccCCCCCcccceeeEEecCCC-EEEEEeCCcceEEEECCCceEEE
Confidence 33334444433 355 899999999998888776553222223342 34444433 77777778889999999998888
Q ss_pred EeecCc
Q 010324 434 SFSSGK 439 (513)
Q Consensus 434 ~~~~~~ 439 (513)
.+....
T Consensus 115 k~~~~~ 120 (369)
T 3s9j_A 115 NYNFQT 120 (369)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 775544
No 430
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=28.70 E-value=2.9e+02 Score=24.00 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=53.7
Q ss_pred ChhhHHHHHHHHHhhcC-hHHHHHHHHhhcCccccccccHHHH---HHHhccCChhhHHhhhcccc-CChhhHH-HHHHH
Q 010324 6 EARDVIKIVLQFCKENS-LQQTFQTLQNECQVSLNTVDSIETF---VADINSGRWDAILPQVAQLK-LPRNKLE-DLYEQ 79 (513)
Q Consensus 6 ~~~e~~~li~q~L~~~G-~~~t~~~L~~Esg~~~~~~~~~~~~---~~~i~~g~w~~~~~~l~~~~-~~~~~~~-~~~~~ 79 (513)
++.++.-.....|.+.| |.++...|+.=.- .. +..+..| .-....|+|++|+.++.... .+++.+. .++-.
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPV--AG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--TT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 45666666677777766 8888887753321 11 1111222 23456799999999998763 3333211 12222
Q ss_pred HHHHHHHcCChHHHHHHHHhC
Q 010324 80 IVLEMIELRELDTARAILRQT 100 (513)
Q Consensus 80 ~~le~l~~~~~~~a~~~lr~~ 100 (513)
.=.-+...++..+|+..+++.
T Consensus 177 LG~al~~LG~~~eAl~~l~~a 197 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEA 197 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 222355678899999888754
No 431
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=27.13 E-value=3.7e+02 Score=24.67 Aligned_cols=232 Identities=10% Similarity=0.075 Sum_probs=0.0
Q ss_pred EEEcCCCCEEEEEeCCCcEEEE-----------EcCCcceeeecccccccCeEEEEEccCCCEEEEeeCCCcEEEEecCC
Q 010324 270 IEFSRDSEMLASGSQDGKIKVW-----------RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 338 (513)
Q Consensus 270 l~~~~~~~~l~s~~~dg~i~vw-----------d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 338 (513)
+..+--+...+.-..||.|..| +.........+.......|..++.. ....++....++.|+.|-...
T Consensus 19 ~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G-~~ht~al~~~gg~v~~wG~n~ 97 (406)
T 4d9s_A 19 LIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG-ADHTVAYSQSGMEVYSWGWGD 97 (406)
T ss_dssp EEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-SSEEEEEETTTTEEEEEECCG
T ss_pred EEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC-cceEEEEECCCCEEEEEcCCC
Q ss_pred C------------ceeeEecccccceeEEEEccCCCEEEEEeCCCcEEEE------eCCCCceeEeecCCCCCCCCCcee
Q 010324 339 G------------KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW------DLKSTDCLQTFKPPPPLRGGDASV 400 (513)
Q Consensus 339 ~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw------d~~~~~~~~~~~~~~~~~~~~~~v 400 (513)
. .+..........|..++.. ..+.+..+.||.|+.| .+-.+.......+.....-....|
T Consensus 98 ~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i 175 (406)
T 4d9s_A 98 FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRI 175 (406)
T ss_dssp GGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCE
T ss_pred CcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcE
Q ss_pred eEEEecCCCCCeEEEEcCCCcEEEEEcc----------CeEEEEeecCccCCCcEEEEEECCCCCEEEEEecCceEEEEE
Q 010324 401 NSVHLFPKNPDHIVVCNKTSSIYIMTLQ----------GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 470 (513)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~----------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 470 (513)
..++... ...++-..+|.++.|-.. ................+..++.... +.++-+.+|.|+.|-
T Consensus 176 ~~va~G~---~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~--ht~~l~~~G~v~~wG 250 (406)
T 4d9s_A 176 KMVAAGA---EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR--HTISVSYSGALYTYG 250 (406)
T ss_dssp EEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS--EEEEEETTCCEEEEE
T ss_pred EEEecCC---CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC--cEEEEcCCCCEEEee
Q ss_pred CCCc------------eeeEeeecccCCeEEEEEcCCCCEEEEEECCCeEEec
Q 010324 471 HQSG------------KLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511 (513)
Q Consensus 471 ~~~~------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~dg~i~iW 511 (513)
.... .+...-......|..++. .....+.-..||.|..|
T Consensus 251 ~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~w 301 (406)
T 4d9s_A 251 WSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGW 301 (406)
T ss_dssp CCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred CCCCCCCCCCCCcCccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEe
No 432
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=26.19 E-value=1.3e+02 Score=19.51 Aligned_cols=50 Identities=12% Similarity=0.186 Sum_probs=26.0
Q ss_pred hccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCc
Q 010324 51 INSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQ 101 (513)
Q Consensus 51 i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~ 101 (513)
...|+|++|+..+... ...+... ..+-..-.-+...++.++|+..+++..
T Consensus 20 ~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 20 YKQGDYDEAIEYYQKALELDPNNA-EAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3457777777765543 2212111 112222223456788888888776543
No 433
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=26.01 E-value=1.7e+02 Score=28.03 Aligned_cols=56 Identities=9% Similarity=0.030 Sum_probs=37.9
Q ss_pred CEEEEEecCceEEEEECC-Cc-------eeeEeeec--ccCCeEEEEEcCCCCEEEEEECCCeEEe
Q 010324 455 EWIYCVGEDRNLYCFSHQ-SG-------KLEHLMKV--HEKDVIGVTHHPHRNLLATYGEDCTMKL 510 (513)
Q Consensus 455 ~~l~~g~~dg~i~iwd~~-~~-------~~~~~~~~--h~~~v~~~~~~p~~~~l~s~~~dg~i~i 510 (513)
..++.|+.+|.|.-.-+. .+ ..+..+.. ...+|..+.+++++..|..++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 357788899976544332 21 12223332 3578999999999999999998887765
No 434
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=25.82 E-value=1.1e+02 Score=22.25 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=38.9
Q ss_pred HhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCchhhhhccCCHHHHHHHH
Q 010324 50 DINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLE 118 (513)
Q Consensus 50 ~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~ 118 (513)
....|+|++|+..+... .+.+.. ..++-..-.-+...++..+|+..+++.+.. ....++.+..+-
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg 88 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPEN-AILYSNRAACLTKLMEFQRALDDCDTCIRL---DSKFIKGYIRKA 88 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hhhhhHHHHHHH
Confidence 35679999999987663 333322 223333334566789999999888765433 344444444433
No 435
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=25.50 E-value=5.3e+02 Score=25.94 Aligned_cols=149 Identities=11% Similarity=0.109 Sum_probs=74.0
Q ss_pred cCCCEEEEeeCCCcEEEEecCCCcee--e--EecccccceeEEEEccCCCEEEEEeCCCcEEEE---eCCCCceeEe-ec
Q 010324 317 RDGSQILSTSFDSTARIHGLKSGKLL--K--EFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW---DLKSTDCLQT-FK 388 (513)
Q Consensus 317 ~~~~~l~~~~~dg~i~i~d~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw---d~~~~~~~~~-~~ 388 (513)
|+....++-+.+|.|+-- .+..+ . .++ ....+..+........++.-+..|.++-- ++..+..... +.
T Consensus 470 ~~e~v~v~ls~~GyiKr~---~g~~~~~~~~~~k-~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~~~~G~~i~ 545 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSA---KGHDIDAPGLNYK-AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLT 545 (716)
T ss_dssp CCCCCCEEEETTTEEEEC---CC----------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC---CBST
T ss_pred CCceEEEEEecCCeEecc---CCCCcCccccccC-CCCeEEEEEEecCCCEEEEEecCCcEEEEEeeecccccccCeeHH
Confidence 456667788888888752 11111 1 111 12223333333334455556666764433 3322211000 00
Q ss_pred CCCCCCCCCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCe------EEEEeecCccCCCcEEEEEEC-CCCCEEEEEe
Q 010324 389 PPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ------VVKSFSSGKREGGDFVAACVS-PKGEWIYCVG 461 (513)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~g~ 461 (513)
....+ ..+..|..+....+ ...++.++..|.++...+..- ....+. ...+..+..+... ..+..++..+
T Consensus 546 ~ll~l-~~~e~i~~~~~~~~-~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~--L~~~d~lv~~~~~~~~~~~v~l~t 621 (716)
T 1zvu_A 546 GKLTL-PPGATVDHMLMESD-DQKLLMASDAGYGFVCTFNDLVARNRAGKALIT--LPENAHVMPPVVIEDASDMLLAIT 621 (716)
T ss_dssp TTSCC-CTTCCEEEEECCCT-TCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBC--CCTTCCBCCCEECCCTTCEEEEEE
T ss_pred hccCC-CCCCeEEEEEEecC-CceEEEEeCCceEEEecHHHhcccCccceEEEe--eCCCCEEEEEEEecCCCCEEEEEe
Confidence 00011 22345665554443 477888999999998887521 111111 1123344444444 3456888999
Q ss_pred cCceEEEEECCC
Q 010324 462 EDRNLYCFSHQS 473 (513)
Q Consensus 462 ~dg~i~iwd~~~ 473 (513)
.+|....|+...
T Consensus 622 ~~g~~lrf~~~~ 633 (716)
T 1zvu_A 622 QAGRMLMFPVSD 633 (716)
T ss_dssp TTSEEEEEESTT
T ss_pred CCCeEEEEEHHH
Confidence 999999998754
No 436
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=25.13 E-value=2.4e+02 Score=22.60 Aligned_cols=94 Identities=9% Similarity=0.046 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHhhcChHHHHHHHHhhcCccccccccHHH-----------------HHHHhccCChhhHHhhhccc-cCC
Q 010324 8 RDVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIET-----------------FVADINSGRWDAILPQVAQL-KLP 69 (513)
Q Consensus 8 ~e~~~li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~~-----------------~~~~i~~g~w~~~~~~l~~~-~~~ 69 (513)
++++..-..++....|.++...+++=-....+.+...-. =......|++++|+..+... .+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 455566666777777888888887754443332111100 11234569999999877664 333
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHhCch
Q 010324 70 RNKLEDLYEQIVLEMIELRELDTARAILRQTQA 102 (513)
Q Consensus 70 ~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~ 102 (513)
++.... +-..=.-+...++..+|+..+++.+.
T Consensus 85 p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 85 PNNVDC-LEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp TTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 322211 11122234567889999988876543
No 437
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=24.87 E-value=2.3e+02 Score=21.44 Aligned_cols=90 Identities=6% Similarity=0.027 Sum_probs=48.6
Q ss_pred HHHHHHHhhcChHHHHHHHHhhcCccccccccHH-HHHHHhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcCC
Q 010324 12 KIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIE-TFVADINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELRE 89 (513)
Q Consensus 12 ~li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~-~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~~ 89 (513)
.+-..++...-|.++...+++=-.+.-+.+.... .=.-....|+|++|+..+... .+.++. ...+-..-.-+...++
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRLGLARFDMAD 94 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccC
Confidence 3344455556678887777765444332211111 112234568999998877664 333322 1222222333556788
Q ss_pred hHHHHHHHHhCch
Q 010324 90 LDTARAILRQTQA 102 (513)
Q Consensus 90 ~~~a~~~lr~~~~ 102 (513)
..+|+..+++.+.
T Consensus 95 ~~~A~~~~~~al~ 107 (164)
T 3sz7_A 95 YKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8889888875543
No 438
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=24.75 E-value=1.9e+02 Score=20.42 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHhhcChHHHHHHHHhhcCccccccccHHHHHHHhccCChhhHHhhhccccCChhhHHHHHHHHHHHHH
Q 010324 7 ARDVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVAQLKLPRNKLEDLYEQIVLEMI 85 (513)
Q Consensus 7 ~~e~~~li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~le~l 85 (513)
..++--.|+|-|...|-+.-|+.+ |+.- ..+.+++....+ ++...+..+ .+++++.-+..+.++. .++|
T Consensus 10 a~~~es~il~~la~~gq~~vA~~i----GV~~---StISR~k~~~~~-~~~~lLa~l-~l~v~~~e~~~~~k~~-~~~l 78 (97)
T 1xwr_A 10 ALRIESALLNKIAMLGTEKTAEAV----GVDK---SQISRWKRDWIP-KFSMLLAVL-EWGVVDDDMARLARQV-AAIL 78 (97)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHH----TCCT---TTHHHHHHHHHH-HHHHHHHHH-HHCCCHHHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh----CCCH---HHHHHHHhhhHH-HHHHHHHHH-hcCCChHHHHHHHHHH-HHHH
Confidence 346677889999999988777654 6633 336666665544 556666666 6777776544444443 3444
No 439
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=24.39 E-value=24 Score=25.18 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.3
Q ss_pred ccChhhHHHHHHHHHhhcChHH
Q 010324 4 EIEARDVIKIVLQFCKENSLQQ 25 (513)
Q Consensus 4 ~~~~~e~~~li~q~L~~~G~~~ 25 (513)
..+|.||++.|++|-+++++.+
T Consensus 34 ~~sR~eVvk~lW~YIK~nnLQd 55 (101)
T 1v32_A 34 MISRYDVSDTIAKYISKEGLLD 55 (101)
T ss_dssp CCCHHHHHHHHHHHHHHHTCBC
T ss_pred ccCHHHHHHHHHHHHHhhcCcC
Confidence 3789999999999999999763
No 440
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=24.23 E-value=2e+02 Score=20.60 Aligned_cols=90 Identities=8% Similarity=-0.037 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcChHHHHHHHHhhcCccccccccHHH-HHHHhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcC
Q 010324 11 IKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIET-FVADINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELR 88 (513)
Q Consensus 11 ~~li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~~-~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~ 88 (513)
..+-..++...-|.++...+++=-.+..+.+..... =.-....|+|++|+..+... .+.++.. ..+-..-.-+...+
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~ 91 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV-KAHFFLGQCQLEME 91 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH-HHHHHHHHHHHHHh
Confidence 334444555566788877777643333222111111 11234568999988877664 3333221 12222223355678
Q ss_pred ChHHHHHHHHhCc
Q 010324 89 ELDTARAILRQTQ 101 (513)
Q Consensus 89 ~~~~a~~~lr~~~ 101 (513)
+..+|+..+++..
T Consensus 92 ~~~~A~~~~~~a~ 104 (137)
T 3q49_B 92 SYDEAIANLQRAY 104 (137)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8888888876543
No 441
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=23.67 E-value=1.2e+02 Score=22.55 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=32.7
Q ss_pred HHhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCch
Q 010324 49 ADINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQA 102 (513)
Q Consensus 49 ~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~ 102 (513)
.....|+|++|+..+... ...+.. ...+...-.-+...++.++|+..+++...
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCMLDHYD-ARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 345679999999988775 222222 12222222335678899999988876543
No 442
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=23.40 E-value=1.4e+02 Score=21.28 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=33.1
Q ss_pred HhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCch
Q 010324 50 DINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQA 102 (513)
Q Consensus 50 ~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~ 102 (513)
....|+|++|+..+... .+.++. ..++-..-.-+...++..+|+..+++.+.
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTEMIKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35679999999987664 332222 23333333445678999999988876543
No 443
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=23.37 E-value=1.6e+02 Score=20.78 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=20.7
Q ss_pred CChhhHHhhhccc-cCC--hhhHHHHHHHHHHHHHHcCChHHHHHHHHhC
Q 010324 54 GRWDAILPQVAQL-KLP--RNKLEDLYEQIVLEMIELRELDTARAILRQT 100 (513)
Q Consensus 54 g~w~~~~~~l~~~-~~~--~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~ 100 (513)
|++++|+..+... .+. +......+-..-.-+...++.++|+..+++.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 53 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG 53 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555554443 221 2222233333333455667777777666554
No 444
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=23.34 E-value=37 Score=22.67 Aligned_cols=33 Identities=9% Similarity=0.298 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHhhcChH-HHHHHHHhhcCcccc
Q 010324 7 ARDVIKIVLQFCKENSLQ-QTFQTLQNECQVSLN 39 (513)
Q Consensus 7 ~~e~~~li~q~L~~~G~~-~t~~~L~~Esg~~~~ 39 (513)
...+...|+..|.+.||- .+...+.++-|+..+
T Consensus 30 ~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~ 63 (76)
T 2k9l_A 30 EQELALELLNYLNEKGFLSKSVEEISDVLRCSVE 63 (76)
T ss_dssp SHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH
Confidence 355778889999999995 345555555565433
No 445
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=22.84 E-value=1.3e+02 Score=21.70 Aligned_cols=92 Identities=11% Similarity=0.115 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhhcChHHHHHHHHhhcCccccccccHHH-HHHHhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHH
Q 010324 8 RDVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIET-FVADINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMI 85 (513)
Q Consensus 8 ~e~~~li~q~L~~~G~~~t~~~L~~Esg~~~~~~~~~~~-~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l 85 (513)
.+...+-..++...-|.++...|++=-...-+.+...-. =.-....|++++|+..+... .+.++... .+-..-.-+.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA-VHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Confidence 345566667777788888888887755443332221111 11234569999999987664 34332221 2222222345
Q ss_pred HcCChHHHHHHHHhC
Q 010324 86 ELRELDTARAILRQT 100 (513)
Q Consensus 86 ~~~~~~~a~~~lr~~ 100 (513)
..++.++|+..+++.
T Consensus 97 ~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 97 NEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 567788888888653
No 446
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=22.18 E-value=1.5e+02 Score=20.89 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=32.6
Q ss_pred HhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCch
Q 010324 50 DINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQA 102 (513)
Q Consensus 50 ~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~ 102 (513)
....|+|++|+..+... ...+.. ..++...-.-+...++.++|+..+++...
T Consensus 26 ~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 26 CFQKGDYPQAMKHYTEAIKRNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQ 78 (133)
T ss_dssp HHHTTCSHHHHHHHHHHHTTCTTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35679999999987765 333222 22333333345677889999988876543
No 447
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=22.04 E-value=2.9e+02 Score=25.84 Aligned_cols=76 Identities=8% Similarity=-0.091 Sum_probs=46.7
Q ss_pred HHHHHHhccCChhhHHhhhccc-c-----CCh--hhHHHHHHHHHHHHHHcCChHHHHHHHHhCchh--hhhccCCHHHH
Q 010324 45 ETFVADINSGRWDAILPQVAQL-K-----LPR--NKLEDLYEQIVLEMIELRELDTARAILRQTQAM--GVMKQEQPERY 114 (513)
Q Consensus 45 ~~~~~~i~~g~w~~~~~~l~~~-~-----~~~--~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~~--~~~~~~~~~~~ 114 (513)
+.++.+-..|+|++|+..+.+. . +.+ -.....+.....-+..++++++|+...++.+.. ..+...+|+..
T Consensus 303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 3455555678999999876543 1 111 123334444555566789999998887765333 35677777766
Q ss_pred HHHHHH
Q 010324 115 LRLEHL 120 (513)
Q Consensus 115 ~~l~~l 120 (513)
..+..|
T Consensus 383 ~~l~nL 388 (433)
T 3qww_A 383 SMWLKL 388 (433)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 448
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=22.02 E-value=1.9e+02 Score=26.43 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhhcC-hHHHHHHHHh
Q 010324 9 DVIKIVLQFCKENS-LQQTFQTLQN 32 (513)
Q Consensus 9 e~~~li~q~L~~~G-~~~t~~~L~~ 32 (513)
++.......+...| |.++...+++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~ 122 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRD 122 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHH
Confidence 34444444445444 5555554444
No 449
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=21.84 E-value=1.4e+02 Score=23.90 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=45.2
Q ss_pred HHHHHHHhccCChhhHHhhhccccCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCchhh
Q 010324 44 IETFVADINSGRWDAILPQVAQLKLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQAMG 104 (513)
Q Consensus 44 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~~~ 104 (513)
-.+|.-+|.-|+++.|.+....+. ....+++.=-+.|..++...|.+++++...+.
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~ 64 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQTQHSFD 64 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH
Confidence 457999999999999999776552 24578887788999999999999998776553
No 450
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=21.31 E-value=5.4e+02 Score=24.56 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=11.5
Q ss_pred HHHHcCChHHHHHHHHhC
Q 010324 83 EMIELRELDTARAILRQT 100 (513)
Q Consensus 83 e~l~~~~~~~a~~~lr~~ 100 (513)
-+...++.++|+..+++.
T Consensus 209 ~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 209 VYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 345567777777776654
No 451
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=21.03 E-value=55 Score=19.97 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHhh
Q 010324 7 ARDVIKIVLQFCKE 20 (513)
Q Consensus 7 ~~e~~~li~q~L~~ 20 (513)
++++...|.|||+.
T Consensus 2 ~K~la~sIi~FL~~ 15 (52)
T 4gof_A 2 KKRLAYAIIQFLHD 15 (52)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 35689999999975
No 452
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=20.88 E-value=30 Score=25.15 Aligned_cols=30 Identities=17% Similarity=0.198 Sum_probs=18.2
Q ss_pred HhhcCccccccccHHHHHHHhccCChhhHHhhhcc
Q 010324 31 QNECQVSLNTVDSIETFVADINSGRWDAILPQVAQ 65 (513)
Q Consensus 31 ~~Esg~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~ 65 (513)
=+|||++...-+ +-. +.+|+|+++.+.++.
T Consensus 34 l~~sGl~y~~~p----mgT-~IEGe~devm~vv~~ 63 (109)
T 1yqh_A 34 VQQSGVRYEVGA----MET-TLEGELDVLLDVVKR 63 (109)
T ss_dssp HHHSCSEEEECS----SCE-EEEECHHHHHHHHHH
T ss_pred HHHcCCCeEecC----Ccc-EEEcCHHHHHHHHHH
Confidence 347888775312 111 346999998884443
No 453
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=20.77 E-value=27 Score=25.13 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=18.4
Q ss_pred HhhcCccccccccHHHHHHHhccCChhhHHhhhcc
Q 010324 31 QNECQVSLNTVDSIETFVADINSGRWDAILPQVAQ 65 (513)
Q Consensus 31 ~~Esg~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~ 65 (513)
=++||++...-+ +-. +.+|+|+++.+.++.
T Consensus 29 l~~sGl~y~~~p----mgT-~IEGe~devm~vv~~ 58 (104)
T 2ibo_A 29 LQTQEVTMVVTP----FET-VLEGEFDELMRILKE 58 (104)
T ss_dssp HHHSSSEEEECS----SCE-EEEEEHHHHHHHHHH
T ss_pred HHHcCCCeEecC----Ccc-EEEcCHHHHHHHHHH
Confidence 347998876322 111 346999998885443
No 454
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=20.66 E-value=24 Score=25.36 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCccccccccHHHHHHHhccCChhhHHhhhcc
Q 010324 25 QTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVAQ 65 (513)
Q Consensus 25 ~t~~~L~~Esg~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~ 65 (513)
..+..+=+|||++...-+ +-. +.+|+|+++.+.++.
T Consensus 27 a~~i~~i~~sGl~y~~~p----m~T-~IEGe~devm~vv~~ 62 (104)
T 1lxj_A 27 ALIEKKIRESPLKSTLHS----AGT-TIEGPWDDVMGLIGE 62 (104)
T ss_dssp HHHHHHHHTSSSEEEEET----TEE-EEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEeCC----Ccc-EEEcCHHHHHHHHHH
Confidence 334444457888775312 111 346999998884433
No 455
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=20.53 E-value=1.6e+02 Score=22.39 Aligned_cols=66 Identities=6% Similarity=0.033 Sum_probs=38.8
Q ss_pred HhccCChhhHHhhhccc-cCChhhHHHHHHHHHHHHHHcCChHHHHHHHHhCchhhhhccCCHHHHHHHHH
Q 010324 50 DINSGRWDAILPQVAQL-KLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEH 119 (513)
Q Consensus 50 ~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~le~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~ 119 (513)
....|+|++|+..+... .+.++. ..++-..-.-+...+++.+|+..+++.+.. ....+..+..+-.
T Consensus 21 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 21 AMARKEYSKAIDLYTQALSIAPAN-PIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCcC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 45679999999987765 332222 223333334466789999999888765433 3333444444433
No 456
>2ko6_A Uncharacterized protein YIHD; alpha protein, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=20.40 E-value=1.1e+02 Score=20.48 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHh---hcChHHHHHHHHhhcCcccc
Q 010324 8 RDVIKIVLQFCK---ENSLQQTFQTLQNECQVSLN 39 (513)
Q Consensus 8 ~e~~~li~q~L~---~~G~~~t~~~L~~Esg~~~~ 39 (513)
+|++.|+.-+-+ ++.+.+-.+.|.+|+|+.-+
T Consensus 7 nEliELL~p~W~k~~dLnL~q~Lqkla~Eagf~g~ 41 (89)
T 2ko6_A 7 NEVIELLQPAWQKEPDFNLLQFLQKLAKESGFDGE 41 (89)
T ss_dssp HHHHHHTHHHHHSSTTSCHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHhcHHhhcCCCccHHHHHHHHHHHhCCCCc
Confidence 577777766443 58999999999999999654
No 457
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=20.21 E-value=6.2e+02 Score=24.84 Aligned_cols=105 Identities=17% Similarity=0.251 Sum_probs=57.8
Q ss_pred CcEEEEeCCCCceeEe--ecCCCC----CCC-CCceeeEEEecCCCCCeEEEEcCCCcEEEEEccCeEEEEeecCccCCC
Q 010324 371 CTVKVWDLKSTDCLQT--FKPPPP----LRG-GDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGG 443 (513)
Q Consensus 371 g~i~iwd~~~~~~~~~--~~~~~~----~~~-~~~~v~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 443 (513)
..|..||.+.++.... +..... ..+ ....+.-..+.-++...++.++ .++|-+|..+..... .|+.
T Consensus 296 ~~v~A~d~~~g~L~~~W~~ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~Gs-----~~iD~dG~~L~st~~--gHGD 368 (620)
T 2zuy_A 296 TVLVAYDFRNGRLKKRWVFDSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGA-----MAVDHDGTGLYSTGL--GHGD 368 (620)
T ss_dssp CEEEEEEEETTEEEEEEEEETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEETT-----EEECTTSSEEEECSC--CCCS
T ss_pred eeEEEEEccCCceeeeeEecCCCCcccccccccCcCceEEecCCCCceeEEEee-----eEECCCCCEEeecCC--CCCc
Confidence 4577788877654332 222111 001 0112233334555666666665 255555665555443 4555
Q ss_pred cEEEEEECCC--CCEEEEEecC----ceEEEEECCCceeeEeeec
Q 010324 444 DFVAACVSPK--GEWIYCVGED----RNLYCFSHQSGKLEHLMKV 482 (513)
Q Consensus 444 ~~~~~~~s~~--~~~l~~g~~d----g~i~iwd~~~~~~~~~~~~ 482 (513)
......+.|+ |-.++.+.++ ....+.|..+|+.+.....
T Consensus 369 a~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~ 413 (620)
T 2zuy_A 369 AMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHA 413 (620)
T ss_dssp CEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECC
T ss_pred eeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecC
Confidence 6666677776 5566666654 2467789999998877653
Done!