Query 010325
Match_columns 513
No_of_seqs 330 out of 2603
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 23:12:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4536 CorB Putative Mg2+ and 100.0 5.7E-66 1.2E-70 515.4 20.2 366 35-413 3-388 (423)
2 PRK11573 hypothetical protein; 100.0 6.9E-63 1.5E-67 521.8 30.4 356 46-415 2-379 (413)
3 TIGR03520 GldE gliding motilit 100.0 2.4E-62 5.1E-67 517.6 32.7 358 43-414 2-382 (408)
4 COG1253 TlyC Hemolysins and re 100.0 3.1E-57 6.7E-62 482.1 32.4 362 38-411 6-392 (429)
5 KOG2118 Predicted membrane pro 100.0 6.7E-38 1.5E-42 336.1 11.8 427 26-464 3-449 (498)
6 PRK15094 magnesium/cobalt effl 100.0 3.5E-33 7.5E-38 283.1 14.3 225 177-411 24-252 (292)
7 COG4535 CorC Putative Mg2+ and 100.0 1.1E-33 2.4E-38 267.5 5.9 222 173-404 20-244 (293)
8 PF01595 DUF21: Domain of unkn 99.9 1.2E-25 2.5E-30 212.4 21.9 167 39-213 3-183 (183)
9 COG3448 CBS-domain-containing 99.7 1.1E-15 2.3E-20 149.9 19.1 136 186-329 202-353 (382)
10 TIGR00400 mgtE Mg2+ transporte 99.7 1E-16 2.2E-21 172.3 12.6 134 186-329 89-233 (449)
11 TIGR01302 IMP_dehydrog inosine 99.6 5.6E-15 1.2E-19 158.7 14.0 150 185-349 43-200 (450)
12 COG2524 Predicted transcriptio 99.6 3E-15 6.4E-20 144.5 8.2 108 217-329 163-272 (294)
13 COG4109 Predicted transcriptio 99.5 5.2E-14 1.1E-18 141.1 10.1 103 223-329 185-287 (432)
14 COG2239 MgtE Mg/Co/Ni transpor 99.5 3.8E-14 8.2E-19 150.6 9.1 116 208-329 114-234 (451)
15 PRK05567 inosine 5'-monophosph 99.4 1.7E-12 3.7E-17 140.9 14.3 150 185-350 50-205 (486)
16 cd04603 CBS_pair_KefB_assoc Th 99.4 4.3E-12 9.3E-17 109.4 10.9 91 237-329 2-94 (111)
17 cd04641 CBS_pair_28 The CBS do 99.4 5.4E-12 1.2E-16 110.0 10.7 91 237-329 2-103 (120)
18 cd04618 CBS_pair_5 The CBS dom 99.3 8.3E-12 1.8E-16 106.0 10.9 79 237-329 2-80 (98)
19 PRK07807 inosine 5-monophospha 99.3 5.1E-12 1.1E-16 136.3 11.6 99 225-329 88-186 (479)
20 cd04605 CBS_pair_MET2_assoc Th 99.3 6.2E-12 1.3E-16 107.4 9.9 91 237-329 3-93 (110)
21 cd04623 CBS_pair_10 The CBS do 99.3 7.7E-12 1.7E-16 106.9 10.2 91 237-329 2-97 (113)
22 cd04596 CBS_pair_DRTGG_assoc T 99.3 6.8E-12 1.5E-16 107.2 9.8 90 236-329 2-91 (108)
23 cd04626 CBS_pair_13 The CBS do 99.3 6E-12 1.3E-16 107.8 9.3 91 237-329 2-95 (111)
24 PRK10892 D-arabinose 5-phospha 99.3 4.2E-12 9.1E-17 131.0 9.9 104 224-329 200-307 (326)
25 TIGR03520 GldE gliding motilit 99.3 1.1E-11 2.4E-16 131.7 13.2 128 290-438 190-320 (408)
26 cd04630 CBS_pair_17 The CBS do 99.3 9.8E-12 2.1E-16 107.3 10.4 92 237-329 2-98 (114)
27 cd04590 CBS_pair_CorC_HlyC_ass 99.3 1.1E-11 2.4E-16 106.0 9.7 92 236-329 1-94 (111)
28 cd04600 CBS_pair_HPP_assoc Thi 99.3 1.4E-11 2.9E-16 107.6 10.1 91 237-329 3-107 (124)
29 cd04619 CBS_pair_6 The CBS dom 99.3 1.4E-11 3.1E-16 106.5 10.1 91 237-329 2-97 (114)
30 COG4536 CorB Putative Mg2+ and 99.3 9.3E-12 2E-16 126.3 10.1 168 250-443 168-338 (423)
31 PLN02274 inosine-5'-monophosph 99.3 5.4E-12 1.2E-16 137.0 8.9 119 211-338 90-212 (505)
32 cd04593 CBS_pair_EriC_assoc_ba 99.3 1.4E-11 3E-16 106.3 9.7 91 237-329 2-96 (115)
33 cd04631 CBS_pair_18 The CBS do 99.3 1.8E-11 3.8E-16 107.0 9.5 92 237-329 2-108 (125)
34 PRK11543 gutQ D-arabinose 5-ph 99.3 9.3E-12 2E-16 128.1 8.9 103 225-329 196-301 (321)
35 cd04642 CBS_pair_29 The CBS do 99.3 2.6E-11 5.6E-16 106.8 10.5 91 237-329 2-109 (126)
36 cd04624 CBS_pair_11 The CBS do 99.3 2.3E-11 5E-16 104.2 9.7 91 237-329 2-95 (112)
37 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 3.5E-11 7.5E-16 102.6 10.3 90 237-329 2-94 (111)
38 cd04639 CBS_pair_26 The CBS do 99.3 2.2E-11 4.8E-16 104.1 9.0 91 237-329 2-94 (111)
39 COG3620 Predicted transcriptio 99.3 1.3E-11 2.9E-16 111.4 7.7 93 224-321 63-160 (187)
40 cd04627 CBS_pair_14 The CBS do 99.3 2.5E-11 5.4E-16 106.3 9.3 92 237-329 2-106 (123)
41 cd04621 CBS_pair_8 The CBS dom 99.2 3E-11 6.6E-16 108.5 9.9 91 237-329 2-119 (135)
42 PRK01862 putative voltage-gate 99.2 1.9E-11 4.1E-16 135.6 10.3 103 223-329 444-550 (574)
43 cd04803 CBS_pair_15 The CBS do 99.2 3.6E-11 7.8E-16 104.6 9.9 91 237-329 2-105 (122)
44 PRK07107 inosine 5-monophospha 99.2 2E-11 4.3E-16 132.4 10.1 127 211-347 87-217 (502)
45 cd04643 CBS_pair_30 The CBS do 99.2 3.7E-11 7.9E-16 103.4 9.7 89 237-329 2-99 (116)
46 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 3.5E-11 7.5E-16 103.0 9.3 91 237-329 2-96 (114)
47 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 5.5E-11 1.2E-15 101.4 9.9 90 237-329 2-94 (111)
48 cd04599 CBS_pair_GGDEF_assoc2 99.2 5.4E-11 1.2E-15 100.5 9.8 88 237-329 2-89 (105)
49 cd04588 CBS_pair_CAP-ED_DUF294 99.2 6E-11 1.3E-15 101.3 10.0 90 237-329 2-93 (110)
50 cd04801 CBS_pair_M50_like This 99.2 2.8E-11 6.1E-16 104.3 8.0 92 237-330 2-98 (114)
51 cd04636 CBS_pair_23 The CBS do 99.2 5E-11 1.1E-15 105.8 9.7 91 237-329 2-116 (132)
52 cd04635 CBS_pair_22 The CBS do 99.2 5E-11 1.1E-15 103.7 9.5 91 237-329 2-105 (122)
53 cd04610 CBS_pair_ParBc_assoc T 99.2 7.6E-11 1.7E-15 99.9 10.3 88 237-329 3-90 (107)
54 cd04583 CBS_pair_ABC_OpuCA_ass 99.2 7.6E-11 1.7E-15 100.1 10.1 90 237-329 3-92 (109)
55 PRK11573 hypothetical protein; 99.2 9.7E-11 2.1E-15 124.7 13.0 132 290-438 186-320 (413)
56 cd04594 CBS_pair_EriC_assoc_ar 99.2 8.7E-11 1.9E-15 99.9 10.0 84 240-329 5-88 (104)
57 cd04617 CBS_pair_4 The CBS dom 99.2 5.6E-11 1.2E-15 103.4 9.0 92 237-330 2-99 (118)
58 cd04640 CBS_pair_27 The CBS do 99.2 6.6E-11 1.4E-15 104.3 9.5 91 237-329 2-108 (126)
59 cd04607 CBS_pair_NTP_transfera 99.2 8.6E-11 1.9E-15 101.0 10.0 91 237-329 3-96 (113)
60 cd04582 CBS_pair_ABC_OpuCA_ass 99.2 1.1E-10 2.4E-15 98.9 10.6 88 237-329 2-89 (106)
61 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 6.2E-11 1.3E-15 127.8 11.1 101 225-332 87-187 (475)
62 cd04589 CBS_pair_CAP-ED_DUF294 99.2 9.2E-11 2E-15 100.4 9.9 90 237-329 2-95 (111)
63 cd04601 CBS_pair_IMPDH This cd 99.2 8.7E-11 1.9E-15 100.0 9.7 90 237-329 3-93 (110)
64 cd04585 CBS_pair_ACT_assoc2 Th 99.2 9.8E-11 2.1E-15 101.2 9.8 90 237-329 2-105 (122)
65 cd04632 CBS_pair_19 The CBS do 99.2 9E-11 1.9E-15 103.4 9.6 91 237-329 2-109 (128)
66 cd04614 CBS_pair_1 The CBS dom 99.2 1.3E-10 2.7E-15 98.1 10.0 78 237-329 2-79 (96)
67 PTZ00314 inosine-5'-monophosph 99.2 9.8E-11 2.1E-15 127.1 11.8 128 212-350 87-218 (495)
68 cd04800 CBS_pair_CAP-ED_DUF294 99.2 1.1E-10 2.4E-15 99.8 9.7 90 237-329 2-95 (111)
69 cd04595 CBS_pair_DHH_polyA_Pol 99.2 1.1E-10 2.4E-15 99.7 9.7 90 237-329 3-94 (110)
70 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 9E-11 2E-15 100.5 8.9 91 237-329 3-97 (114)
71 COG1253 TlyC Hemolysins and re 99.2 3.5E-10 7.6E-15 121.2 15.3 130 290-438 205-337 (429)
72 cd04615 CBS_pair_2 The CBS dom 99.2 1.3E-10 2.8E-15 99.7 9.7 90 238-329 3-96 (113)
73 cd04606 CBS_pair_Mg_transporte 99.2 1.1E-10 2.3E-15 99.9 9.1 85 241-329 2-91 (109)
74 cd04638 CBS_pair_25 The CBS do 99.2 1.9E-10 4.2E-15 97.7 10.6 89 237-329 2-90 (106)
75 cd04602 CBS_pair_IMPDH_2 This 99.2 1.2E-10 2.6E-15 100.6 9.4 91 237-329 3-97 (114)
76 cd04629 CBS_pair_16 The CBS do 99.2 9.1E-11 2E-15 100.7 8.5 91 237-329 2-98 (114)
77 cd04586 CBS_pair_BON_assoc Thi 99.2 1E-10 2.3E-15 104.1 8.9 91 237-329 3-119 (135)
78 cd04608 CBS_pair_PALP_assoc Th 99.2 5.9E-11 1.3E-15 104.9 7.0 81 237-319 3-87 (124)
79 TIGR01137 cysta_beta cystathio 99.2 1.1E-10 2.4E-15 125.8 10.5 104 217-329 328-435 (454)
80 cd04587 CBS_pair_CAP-ED_DUF294 99.2 1.4E-10 3E-15 99.4 9.0 90 237-329 2-96 (113)
81 cd04637 CBS_pair_24 The CBS do 99.2 1E-10 2.3E-15 101.8 8.3 90 237-329 2-105 (122)
82 cd04620 CBS_pair_7 The CBS dom 99.2 1.6E-10 3.6E-15 99.5 9.4 90 237-329 2-98 (115)
83 cd04622 CBS_pair_9 The CBS dom 99.2 2.5E-10 5.4E-15 97.8 10.3 90 237-329 2-96 (113)
84 cd04591 CBS_pair_EriC_assoc_eu 99.1 1.8E-10 3.8E-15 98.8 9.0 86 236-329 2-89 (105)
85 cd04802 CBS_pair_3 The CBS dom 99.1 3.5E-10 7.6E-15 96.8 10.0 90 237-329 2-96 (112)
86 cd04584 CBS_pair_ACT_assoc Thi 99.1 3.8E-10 8.3E-15 97.8 9.5 91 237-329 2-105 (121)
87 cd04609 CBS_pair_PALP_assoc2 T 99.1 3.9E-10 8.4E-15 95.8 9.1 88 237-329 2-93 (110)
88 cd04625 CBS_pair_12 The CBS do 99.1 5E-10 1.1E-14 95.8 9.4 90 237-329 2-96 (112)
89 cd04633 CBS_pair_20 The CBS do 99.1 4.9E-10 1.1E-14 97.3 9.0 90 237-329 2-105 (121)
90 cd02205 CBS_pair The CBS domai 99.1 8.9E-10 1.9E-14 92.7 9.6 91 237-329 2-96 (113)
91 cd04634 CBS_pair_21 The CBS do 99.1 6.5E-10 1.4E-14 100.5 9.2 90 237-329 2-127 (143)
92 TIGR00393 kpsF KpsF/GutQ famil 99.0 4.1E-10 8.9E-15 112.8 8.2 110 226-338 155-267 (268)
93 cd04598 CBS_pair_GGDEF_assoc T 99.0 9.9E-10 2.1E-14 95.0 8.8 90 237-329 2-102 (119)
94 COG0517 FOG: CBS domain [Gener 99.0 2.1E-09 4.5E-14 92.5 9.9 95 230-329 3-101 (117)
95 PRK15094 magnesium/cobalt effl 98.9 7.3E-10 1.6E-14 112.8 3.5 131 289-438 65-198 (292)
96 cd04592 CBS_pair_EriC_assoc_eu 98.8 1.2E-08 2.6E-13 91.8 8.1 94 237-332 2-119 (133)
97 COG2905 Predicted signal-trans 98.8 7.7E-09 1.7E-13 110.2 7.4 102 224-329 147-252 (610)
98 PRK14869 putative manganese-de 98.7 3.3E-08 7.1E-13 109.2 8.9 118 225-348 67-302 (546)
99 PF00571 CBS: CBS domain CBS d 98.5 1.2E-07 2.6E-12 71.8 4.9 37 293-329 1-37 (57)
100 COG4535 CorC Putative Mg2+ and 98.5 2.7E-08 5.8E-13 95.7 1.3 163 250-441 36-201 (293)
101 PF00571 CBS: CBS domain CBS d 98.4 2.5E-07 5.4E-12 70.1 4.5 54 228-285 1-54 (57)
102 KOG1764 5'-AMP-activated prote 98.3 3.5E-06 7.5E-11 88.9 9.8 91 237-329 238-340 (381)
103 KOG2550 IMP dehydrogenase/GMP 98.2 2.8E-06 6.1E-11 87.6 7.3 150 185-345 71-223 (503)
104 PRK10070 glycine betaine trans 98.2 1E-05 2.2E-10 86.0 11.5 100 226-329 274-374 (400)
105 KOG0474 Cl- channel CLC-7 and 98.1 3.5E-06 7.6E-11 90.9 5.3 104 223-329 579-728 (762)
106 TIGR01186 proV glycine betaine 98.0 3.4E-05 7.5E-10 81.0 11.6 86 240-329 254-339 (363)
107 TIGR00400 mgtE Mg2+ transporte 97.6 3.1E-05 6.6E-10 83.8 2.4 101 223-329 192-292 (449)
108 cd04603 CBS_pair_KefB_assoc Th 97.6 0.00011 2.5E-09 62.8 5.3 56 225-284 55-110 (111)
109 PRK14869 putative manganese-de 97.5 4.5E-05 9.7E-10 84.5 3.0 111 224-338 244-383 (546)
110 cd04604 CBS_pair_KpsF_GutQ_ass 97.5 0.00022 4.7E-09 60.6 5.8 59 222-284 55-113 (114)
111 cd04597 CBS_pair_DRTGG_assoc2 97.4 0.00032 7E-09 60.8 6.4 55 226-284 58-112 (113)
112 PRK07107 inosine 5-monophospha 97.4 0.00049 1.1E-08 75.2 8.8 100 223-327 158-260 (502)
113 COG2524 Predicted transcriptio 97.4 0.00019 4.2E-09 70.4 4.9 40 290-329 171-210 (294)
114 KOG0475 Cl- channel CLC-3 and 97.4 0.00072 1.6E-08 73.6 9.3 102 226-328 543-676 (696)
115 cd04801 CBS_pair_M50_like This 97.4 0.00025 5.4E-09 60.7 4.8 58 225-284 56-113 (114)
116 cd04619 CBS_pair_6 The CBS dom 97.3 0.00031 6.6E-09 60.3 5.0 57 224-284 57-113 (114)
117 cd04617 CBS_pair_4 The CBS dom 97.3 0.00033 7.2E-09 60.5 5.2 61 223-284 55-117 (118)
118 cd04597 CBS_pair_DRTGG_assoc2 97.3 0.00028 6.1E-09 61.2 4.6 39 291-329 58-96 (113)
119 TIGR01303 IMP_DH_rel_1 IMP deh 97.2 0.00088 1.9E-08 72.8 8.1 95 226-329 146-244 (475)
120 cd04607 CBS_pair_NTP_transfera 97.2 0.00059 1.3E-08 58.2 5.2 56 225-284 57-112 (113)
121 cd04585 CBS_pair_ACT_assoc2 Th 97.2 0.00061 1.3E-08 58.4 5.0 58 223-284 64-121 (122)
122 PRK07807 inosine 5-monophospha 97.1 0.00098 2.1E-08 72.5 7.6 96 226-330 148-247 (479)
123 cd04618 CBS_pair_5 The CBS dom 97.1 0.0008 1.7E-08 56.8 5.3 46 238-284 52-97 (98)
124 cd04623 CBS_pair_10 The CBS do 97.1 0.00087 1.9E-08 56.7 5.1 55 225-284 58-112 (113)
125 cd04582 CBS_pair_ABC_OpuCA_ass 97.1 0.0012 2.7E-08 55.3 6.0 54 227-284 52-105 (106)
126 cd04610 CBS_pair_ParBc_assoc T 97.1 0.00089 1.9E-08 56.2 5.1 56 225-284 51-106 (107)
127 cd04600 CBS_pair_HPP_assoc Thi 97.1 0.00086 1.9E-08 58.0 5.1 58 223-284 66-123 (124)
128 PRK05567 inosine 5'-monophosph 97.1 0.0016 3.5E-08 71.2 8.3 108 225-338 146-257 (486)
129 cd04625 CBS_pair_12 The CBS do 97.0 0.00087 1.9E-08 56.8 4.9 55 225-284 57-111 (112)
130 cd04640 CBS_pair_27 The CBS do 97.0 0.00066 1.4E-08 59.4 4.0 60 224-284 62-125 (126)
131 TIGR00393 kpsF KpsF/GutQ famil 97.0 0.00034 7.4E-09 69.9 2.4 113 291-419 155-268 (268)
132 cd04620 CBS_pair_7 The CBS dom 97.0 0.0012 2.5E-08 56.4 5.4 56 225-284 57-114 (115)
133 cd04627 CBS_pair_14 The CBS do 97.0 0.0012 2.6E-08 57.4 5.5 52 228-283 70-121 (123)
134 cd04596 CBS_pair_DRTGG_assoc T 97.0 0.0011 2.4E-08 56.1 5.0 57 224-284 51-107 (108)
135 COG3448 CBS-domain-containing 97.0 0.00059 1.3E-08 68.2 3.6 56 290-347 244-299 (382)
136 cd04630 CBS_pair_17 The CBS do 97.0 0.0012 2.5E-08 56.5 5.1 56 224-284 58-113 (114)
137 PTZ00314 inosine-5'-monophosph 97.0 0.0024 5.1E-08 69.9 8.6 101 224-327 157-259 (495)
138 PRK10892 D-arabinose 5-phospha 97.0 0.001 2.2E-08 68.8 5.5 58 223-285 266-323 (326)
139 smart00116 CBS Domain in cysta 97.0 0.0015 3.2E-08 45.8 4.6 29 301-329 2-30 (49)
140 COG0517 FOG: CBS domain [Gener 96.9 0.0022 4.9E-08 54.6 6.6 54 227-283 63-117 (117)
141 cd04613 CBS_pair_SpoIVFB_EriC_ 96.9 0.0013 2.7E-08 55.7 4.9 57 225-284 57-113 (114)
142 cd04615 CBS_pair_2 The CBS dom 96.9 0.0014 3.1E-08 55.6 5.2 57 224-284 56-112 (113)
143 cd04593 CBS_pair_EriC_assoc_ba 96.9 0.0015 3.3E-08 55.8 5.4 56 226-284 58-114 (115)
144 cd04587 CBS_pair_CAP-ED_DUF294 96.9 0.0013 2.8E-08 55.8 4.8 55 226-284 58-112 (113)
145 cd04626 CBS_pair_13 The CBS do 96.9 0.0015 3.2E-08 55.4 5.2 55 225-284 56-110 (111)
146 PLN02274 inosine-5'-monophosph 96.9 0.0027 5.8E-08 69.6 8.2 102 224-329 161-267 (505)
147 cd04621 CBS_pair_8 The CBS dom 96.9 0.0015 3.3E-08 58.3 5.3 56 224-284 79-134 (135)
148 cd04636 CBS_pair_23 The CBS do 96.9 0.0014 3.1E-08 57.7 5.0 56 224-284 76-131 (132)
149 cd04633 CBS_pair_20 The CBS do 96.9 0.0012 2.6E-08 56.8 4.4 57 223-284 64-120 (121)
150 cd04622 CBS_pair_9 The CBS dom 96.9 0.0016 3.5E-08 55.2 5.2 56 225-284 57-112 (113)
151 cd04594 CBS_pair_EriC_assoc_ar 96.9 0.002 4.3E-08 54.2 5.5 54 226-284 50-103 (104)
152 cd04631 CBS_pair_18 The CBS do 96.8 0.0015 3.3E-08 56.5 4.8 57 224-284 68-124 (125)
153 PRK11543 gutQ D-arabinose 5-ph 96.8 0.0018 3.9E-08 66.7 6.0 57 225-285 262-318 (321)
154 cd04606 CBS_pair_Mg_transporte 96.8 0.0019 4.1E-08 54.7 5.1 57 225-285 52-108 (109)
155 cd04584 CBS_pair_ACT_assoc Thi 96.8 0.0017 3.7E-08 55.8 4.8 57 223-284 64-120 (121)
156 cd04589 CBS_pair_CAP-ED_DUF294 96.8 0.0019 4.1E-08 54.7 5.1 56 224-284 55-110 (111)
157 cd04601 CBS_pair_IMPDH This cd 96.8 0.0022 4.8E-08 53.9 5.3 56 225-284 53-109 (110)
158 cd04586 CBS_pair_BON_assoc Thi 96.8 0.0017 3.6E-08 57.5 4.8 57 223-284 78-134 (135)
159 cd04583 CBS_pair_ABC_OpuCA_ass 96.8 0.0022 4.8E-08 53.8 5.2 55 226-284 54-108 (109)
160 cd04595 CBS_pair_DHH_polyA_Pol 96.8 0.0023 5E-08 54.1 5.3 56 224-284 54-109 (110)
161 cd04612 CBS_pair_SpoIVFB_EriC_ 96.8 0.0025 5.5E-08 53.7 5.5 55 226-284 56-110 (111)
162 cd04803 CBS_pair_15 The CBS do 96.8 0.0024 5.2E-08 55.0 5.3 58 223-284 64-121 (122)
163 cd04599 CBS_pair_GGDEF_assoc2 96.8 0.0022 4.7E-08 53.6 4.9 54 225-283 50-103 (105)
164 cd04802 CBS_pair_3 The CBS dom 96.7 0.0023 5E-08 54.2 5.1 56 224-284 56-111 (112)
165 cd04629 CBS_pair_16 The CBS do 96.7 0.0021 4.5E-08 54.6 4.6 55 225-284 59-113 (114)
166 cd04635 CBS_pair_22 The CBS do 96.7 0.0023 4.9E-08 55.2 4.9 57 224-284 65-121 (122)
167 cd04641 CBS_pair_28 The CBS do 96.7 0.0031 6.8E-08 54.4 5.6 52 229-284 68-119 (120)
168 cd04602 CBS_pair_IMPDH_2 This 96.7 0.0025 5.5E-08 54.5 5.0 57 226-284 57-113 (114)
169 cd04611 CBS_pair_PAS_GGDEF_DUF 96.7 0.003 6.5E-08 53.2 5.3 57 224-284 54-110 (111)
170 cd04592 CBS_pair_EriC_assoc_eu 96.7 0.0037 8E-08 56.0 6.0 30 300-329 2-31 (133)
171 cd04614 CBS_pair_1 The CBS dom 96.6 0.0034 7.4E-08 52.5 5.3 31 299-329 1-31 (96)
172 cd04643 CBS_pair_30 The CBS do 96.6 0.0022 4.7E-08 54.7 4.2 55 224-284 61-115 (116)
173 cd04639 CBS_pair_26 The CBS do 96.6 0.0029 6.2E-08 53.5 4.7 55 226-284 56-110 (111)
174 cd04800 CBS_pair_CAP-ED_DUF294 96.6 0.0033 7.1E-08 53.2 4.8 55 225-284 56-110 (111)
175 KOG1764 5'-AMP-activated prote 96.5 0.0083 1.8E-07 63.5 8.5 105 233-338 159-276 (381)
176 smart00116 CBS Domain in cysta 96.5 0.0051 1.1E-07 42.9 4.7 46 238-285 2-47 (49)
177 cd04632 CBS_pair_19 The CBS do 96.5 0.0036 7.8E-08 54.6 4.7 58 224-284 69-127 (128)
178 cd04605 CBS_pair_MET2_assoc Th 96.5 0.0069 1.5E-07 51.1 6.2 54 227-284 56-109 (110)
179 cd04637 CBS_pair_24 The CBS do 96.5 0.0037 7.9E-08 53.9 4.6 55 226-284 67-121 (122)
180 cd04608 CBS_pair_PALP_assoc Th 96.5 0.0079 1.7E-07 52.7 6.6 31 299-329 2-32 (124)
181 cd04624 CBS_pair_11 The CBS do 96.4 0.0067 1.4E-07 51.3 6.0 56 225-284 56-111 (112)
182 cd04588 CBS_pair_CAP-ED_DUF294 96.3 0.0065 1.4E-07 51.2 5.1 55 226-284 55-109 (110)
183 cd04642 CBS_pair_29 The CBS do 96.3 0.0076 1.6E-07 52.6 5.5 51 230-284 75-125 (126)
184 PRK01862 putative voltage-gate 96.3 0.0063 1.4E-07 67.9 6.2 59 225-286 511-570 (574)
185 COG3620 Predicted transcriptio 96.2 0.0051 1.1E-07 56.5 4.0 37 293-329 67-103 (187)
186 cd04591 CBS_pair_EriC_assoc_eu 96.2 0.0081 1.8E-07 51.0 5.0 49 231-284 56-104 (105)
187 cd04590 CBS_pair_CorC_HlyC_ass 96.2 0.0074 1.6E-07 51.0 4.7 53 227-284 58-110 (111)
188 cd04634 CBS_pair_21 The CBS do 96.1 0.0078 1.7E-07 54.1 4.8 56 224-284 87-142 (143)
189 TIGR01137 cysta_beta cystathio 96.1 0.011 2.4E-07 63.8 6.7 39 291-329 335-373 (454)
190 cd04598 CBS_pair_GGDEF_assoc T 96.1 0.0085 1.8E-07 51.3 4.6 57 224-284 59-118 (119)
191 COG4175 ProV ABC-type proline/ 96.1 0.015 3.2E-07 59.4 6.8 104 213-329 261-364 (386)
192 COG2905 Predicted signal-trans 95.9 0.011 2.4E-07 64.1 5.5 69 213-286 198-269 (610)
193 TIGR03415 ABC_choXWV_ATP choli 95.9 0.019 4.2E-07 60.8 7.3 98 216-329 264-362 (382)
194 cd04638 CBS_pair_25 The CBS do 95.7 0.017 3.8E-07 48.4 4.8 53 227-284 53-105 (106)
195 cd02205 CBS_pair The CBS domai 95.5 0.033 7.2E-07 46.0 6.1 53 228-284 60-112 (113)
196 cd04609 CBS_pair_PALP_assoc2 T 95.5 0.016 3.6E-07 48.4 4.2 54 225-284 56-109 (110)
197 TIGR01302 IMP_dehydrog inosine 95.5 0.017 3.6E-07 62.7 5.1 60 224-286 141-200 (450)
198 COG4109 Predicted transcriptio 94.1 0.064 1.4E-06 55.2 4.7 59 224-286 247-305 (432)
199 COG2239 MgtE Mg/Co/Ni transpor 93.5 0.073 1.6E-06 57.5 4.1 60 222-285 192-251 (451)
200 TIGR01186 proV glycine betaine 90.7 0.44 9.5E-06 50.3 5.9 56 226-286 302-357 (363)
201 KOG2550 IMP dehydrogenase/GMP 90.4 0.26 5.7E-06 51.7 3.8 60 222-285 167-226 (503)
202 PF03471 CorC_HlyC: Transporte 86.6 0.17 3.6E-06 41.4 -0.5 47 367-413 2-51 (81)
203 PRK10070 glycine betaine trans 86.6 1.2 2.6E-05 47.7 5.7 58 225-287 336-393 (400)
204 COG1125 OpuBA ABC-type proline 86.3 2.9 6.3E-05 42.0 7.7 82 238-329 189-291 (309)
205 KOG0476 Cl- channel CLC-2 and 61.1 32 0.00069 39.5 8.1 39 291-329 588-626 (931)
206 PF14163 SieB: Superinfection 55.9 53 0.0012 29.9 7.6 18 208-225 78-95 (151)
207 TIGR03415 ABC_choXWV_ATP choli 49.2 17 0.00037 38.6 3.7 47 236-286 333-379 (382)
208 KOG0476 Cl- channel CLC-2 and 44.5 18 0.0004 41.3 3.0 58 224-284 586-644 (931)
209 KOG0474 Cl- channel CLC-7 and 43.7 26 0.00056 39.3 3.9 53 229-285 693-745 (762)
210 PF14147 Spore_YhaL: Sporulati 35.4 36 0.00078 25.5 2.4 17 35-53 3-19 (52)
211 PF07172 GRP: Glycine rich pro 34.0 60 0.0013 27.5 3.9 28 30-57 1-28 (95)
212 COG2216 KdpB High-affinity K+ 33.8 41 0.0009 37.1 3.6 33 250-284 417-449 (681)
213 PRK00753 psbL photosystem II r 33.7 63 0.0014 22.5 3.2 27 25-52 11-37 (39)
214 CHL00038 psbL photosystem II p 33.3 56 0.0012 22.7 2.9 25 27-52 12-36 (38)
215 PF03563 Bunya_G2: Bunyavirus 31.6 1.3E+02 0.0027 30.4 6.2 25 155-179 209-233 (285)
216 PF01595 DUF21: Domain of unkn 30.9 4.1E+02 0.009 24.2 14.7 36 145-180 105-144 (183)
217 TIGR03278 methan_mark_10 putat 28.3 31 0.00068 37.0 1.6 93 310-426 293-387 (404)
218 TIGR00827 EIIC-GAT PTS system, 27.0 2.1E+02 0.0046 30.8 7.4 64 128-196 146-210 (407)
219 KOG0475 Cl- channel CLC-3 and 26.7 83 0.0018 35.5 4.4 54 227-285 640-693 (696)
220 COG4175 ProV ABC-type proline/ 26.2 69 0.0015 33.4 3.5 47 237-286 336-382 (386)
221 PF02419 PsbL: PsbL protein; 25.3 1.1E+02 0.0025 21.2 3.2 24 28-52 12-35 (37)
222 COG3462 Predicted membrane pro 24.6 2.6E+02 0.0056 24.4 6.1 16 206-221 100-115 (117)
223 PF15284 PAGK: Phage-encoded v 24.4 89 0.0019 24.3 2.9 23 40-62 8-30 (61)
224 COG1125 OpuBA ABC-type proline 23.9 1.2E+02 0.0026 30.8 4.6 59 224-284 247-307 (309)
225 PF14316 DUF4381: Domain of un 21.3 5.3E+02 0.011 23.2 8.1 9 32-40 20-28 (146)
No 1
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-66 Score=515.36 Aligned_cols=366 Identities=23% Similarity=0.339 Sum_probs=322.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 010325 35 WFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYL 114 (513)
Q Consensus 35 ~~~~~~i~~~LlllsafFSg~E~Al~s~~~~~L~~l~~~g~~~~kk~a~~il~l~~~~~~ll~Tll~~n~~~~~~~~~~~ 114 (513)
|. +++++++|+++||||||+|+|+++++|.|++.++++|+ |+|+++.+++++|++++.|+|+||+++|++.+.+.
T Consensus 3 ~~-l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~----~~Akrv~kLL~k~drlig~iLIGNNLvNilasala 77 (423)
T COG4536 3 WI-LIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGN----RGAKRVEKLLEKPDRLIGTILIGNNLVNILASALA 77 (423)
T ss_pred ch-HHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccc----hhhHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence 44 44667789999999999999999999999999999999 47899999999999999999999999998766543
Q ss_pred ----HHHHHH---HHHHHHHHHHHHHhhccchhhHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCC-
Q 010325 115 ----DKLFNQ---YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDW---VLGHN- 183 (513)
Q Consensus 115 ----~~~~~~---~~a~~i~t~lilifGEiiPK~la~~~~~~i~~~~a~~~~~l~~l~~Pl~~~~~~~~~~---llg~~- 183 (513)
-++||. .+|+.++|+++++|+|++||++|..||++++...+.++.++..+|+|++|.++++.+. ++|.+
T Consensus 78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~ 157 (423)
T COG4536 78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL 157 (423)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 344543 4778889999999999999999999999999999999999999999999999988775 46754
Q ss_pred ----cccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcC
Q 010325 184 ----EALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG 259 (513)
Q Consensus 184 ----~~~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~ 259 (513)
+...+.||++.+++ +++..|...+++++|+.+++++++.+|.|||+||+++..++.|++.+ +.++.+..+.
T Consensus 158 ~~~~~~~~s~EElR~~v~----~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~ 232 (423)
T COG4536 158 DQAVSQLSSKEELRTAVN----ESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP 232 (423)
T ss_pred ccccccccCHHHHHHHHH----HhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence 25689999999998 44555777778999999999999999999999999999999999998 9999999999
Q ss_pred CceeeeeeCCCCcEEEEEEhhhhhccCCCCc-ccccccc--cccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCccc
Q 010325 260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-TPVSAVS--IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT 336 (513)
Q Consensus 260 ~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~-~~v~dim--~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~G 336 (513)
|+|+|+|.++.|+++|++|.||++++..+.+ ..-.+++ ..++.|||+++++.+.|..|++++.|+++||||||.+.|
T Consensus 233 HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~G 312 (423)
T COG4536 233 HTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQG 312 (423)
T ss_pred CCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEe
Confidence 9999999999999999999999998776543 2222322 478899999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCCCc
Q 010325 337 LPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIEDGE 413 (513)
Q Consensus 337 iv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~g~ 413 (513)
+| |.|||+|||+|++.+.. +.-...+.+..++++.+|+..+++++|+.++|++|.+ +.|++|+++ ..|.||+-.
T Consensus 313 LV--TLEDIlEEIVGdftde~-d~~~~ev~~q~dgs~iidGs~~iRdlNr~l~W~Lp~e~a~TinGLvle~le~IP~~~ 388 (423)
T COG4536 313 LV--TLEDILEEIVGDFTDEH-DTLAKEVIPQSDGSFIIDGSANVRDLNRALDWNLPDEDARTINGLVLEELEEIPEEG 388 (423)
T ss_pred ee--eHHHHHHHHhccccccC-cccchhhcccCCCcEEEeCCCcHHHHHHhcCCCCCCCcchhHHHHHHHHHHhCCCCC
Confidence 99 99999999999999543 2334468889999999999999999999999999987 999999988 777777643
No 2
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-63 Score=521.79 Aligned_cols=356 Identities=20% Similarity=0.289 Sum_probs=308.9
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHH-
Q 010325 46 VLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYL----DKLFNQ- 120 (513)
Q Consensus 46 lllsafFSg~E~Al~s~~~~~L~~l~~~g~~~~kk~a~~il~l~~~~~~ll~Tll~~n~~~~~~~~~~~----~~~~~~- 120 (513)
+++||||||+|+|++|+++.+|+.++++|+ ++|+++++++++|+++|+|+++||+++|.+.+.+. ..+++.
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~----~~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~ 77 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGN----RSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA 77 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCC----hhHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 468999999999999999999999999998 46889999999999999999999999987665432 233332
Q ss_pred --HHHHHHHHHHHHHhhccchhhHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCc-----ccccHH
Q 010325 121 --YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHNE-----ALFRRA 190 (513)
Q Consensus 121 --~~a~~i~t~lilifGEiiPK~la~~~~~~i~~~~a~~~~~l~~l~~Pl~~~~~~~~~~l---lg~~~-----~~~s~e 190 (513)
+++++++|+++++|||++||++|.+||++++.++++++++++++|+|++|+++++.+.+ +|.+. ..++++
T Consensus 78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e 157 (413)
T PRK11573 78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE 157 (413)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence 35666788899999999999999999999999999999999999999999998887754 56432 368999
Q ss_pred HHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC
Q 010325 191 QLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP 270 (513)
Q Consensus 191 eL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~ 270 (513)
||+.+++.+ . +.++++|++|++++++|++++|+||||||+++++++.+++++ ++++.+.+++|||+|||+++.
T Consensus 158 El~~lv~~~----~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~ 230 (413)
T PRK11573 158 ELRTIVHES----R--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL 230 (413)
T ss_pred HHHHHHHHH----h--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence 999999732 2 259999999999999999999999999999999999999998 999999999999999999989
Q ss_pred CcEEEEEEhhhhhccCCCC-c---ccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCc
Q 010325 271 KNIIGLLLVKSLLTVRPET-E---TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP 346 (513)
Q Consensus 271 d~ivGiV~~kDLl~~~~~~-~---~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dil 346 (513)
|+++|++|.||++....+. . ..+.++ .+++.+||+++++.++|+.|++++.|+|+|+||||+++|++ |.+|++
T Consensus 231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiV--TleDil 307 (413)
T PRK11573 231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLV--TVEDIL 307 (413)
T ss_pred CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEe--eHHHHH
Confidence 9999999999998643221 1 123343 68899999999999999999999999999999999999999 999999
Q ss_pred cccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC-Cccc
Q 010325 347 KLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GEVI 415 (513)
Q Consensus 347 e~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~-g~li 415 (513)
|+++|++.++..+.......+..++.|.+|+..+++++++.++..++.+ +.|++||+. ..+++|. |+.+
T Consensus 308 EeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~d~~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Ge~~ 379 (413)
T PRK11573 308 EEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRV 379 (413)
T ss_pred HHHhCCCCcccCcccccceEEecCCEEEEEeeeEHHHHHHHhCCCCCCCCCeeHHHHHHHHhCcCCCCCCEE
Confidence 9999999988643222345667788999999999999999999999876 899999999 8888865 5443
No 3
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=2.4e-62 Score=517.57 Aligned_cols=358 Identities=23% Similarity=0.370 Sum_probs=310.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 010325 43 CVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYL----DKLF 118 (513)
Q Consensus 43 ~~LlllsafFSg~E~Al~s~~~~~L~~l~~~g~~~~kk~a~~il~l~~~~~~ll~Tll~~n~~~~~~~~~~~----~~~~ 118 (513)
++|+++||||||+|+|++|+++.+++.++++|+ ++|+++++++++|+++++|+++||+++|.+++.+. ..+|
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~----~~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNS----KKEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC----HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999987 46889999999999999999999999988766543 3334
Q ss_pred HH--------HHHHHHHHHHHHHhhccchhhHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCcccc
Q 010325 119 NQ--------YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHNEALF 187 (513)
Q Consensus 119 ~~--------~~a~~i~t~lilifGEiiPK~la~~~~~~i~~~~a~~~~~l~~l~~Pl~~~~~~~~~~l---lg~~~~~~ 187 (513)
+. .++++++|+++++|||++||++|.+||++++.++++++++++++|+|++|+++++++++ +|.+...+
T Consensus 78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~~~~ 157 (408)
T TIGR03520 78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNI 157 (408)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 31 13455667788999999999999999999999999999999999999999999988765 56555568
Q ss_pred cHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeee
Q 010325 188 RRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS 267 (513)
Q Consensus 188 s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~ 267 (513)
+++||+.+++.+ .++| ++++|++|++++++|++++|+|+||||+++++++.+++++ ++++.+.+++|||+|||+
T Consensus 158 t~eEl~~lv~~~----~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~~ 231 (408)
T TIGR03520 158 SVDQLSQALELT----DEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYK 231 (408)
T ss_pred CHHHHHHHHHhH----hhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEEc
Confidence 999999999743 3345 6899999999999999999999999999999999999998 999999999999999999
Q ss_pred CCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCcc
Q 010325 268 GNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK 347 (513)
Q Consensus 268 ~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile 347 (513)
++.|+++|+|+.||++....++..++.++ ++++.+||+++++.++++.|++++.|+|+|+||||+++||+ |.+|++|
T Consensus 232 ~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiV--T~eDile 308 (408)
T TIGR03520 232 ETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLV--TLEDIIE 308 (408)
T ss_pred CCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEE--EHHHHHH
Confidence 88899999999999986543333456676 57889999999999999999999999999999999999999 9999999
Q ss_pred ccccCCCCCCCCccccccccccCCceEecCCCCCcccccccccccc------CCCCccccccc-cccccCC-Ccc
Q 010325 348 LNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQ------RSDSTTNGLIY-ASEDIED-GEV 414 (513)
Q Consensus 348 ~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~------~~~~t~~gl~~-~~~~~e~-g~l 414 (513)
+++|++.++... ....+.+..++.|.+++..+++++++.++.+++ .++.|++|++. ..+++|. |+.
T Consensus 309 eivgei~de~d~-~~~~i~~~~~~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~G~~ 382 (408)
T TIGR03520 309 EIVGDISDEFDD-EDLIYSKIDDNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEK 382 (408)
T ss_pred HHhCCCCCcCCc-CccceEEeCCCeEEEEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCCCCE
Confidence 999999987632 233466678889999999999999999998843 24889999998 7788865 443
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=3.1e-57 Score=482.15 Aligned_cols=362 Identities=26% Similarity=0.343 Sum_probs=310.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 010325 38 YAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDK- 116 (513)
Q Consensus 38 ~~~i~~~LlllsafFSg~E~Al~s~~~~~L~~l~~~g~~~~kk~a~~il~l~~~~~~ll~Tll~~n~~~~~~~~~~~~~- 116 (513)
.++++++|+++|||||++|+|++|++|.|+++++++|+ ++|..++++.++++.+++++++|+++++...+.+...
T Consensus 6 ~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~----~~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~~~~ 81 (429)
T COG1253 6 TLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGN----KRAKAALKLIERLNRYLSTVQLGITLVSLLLGAVGEPA 81 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccC----HhHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667779999999999999999999999999999987 4788999999999999999999999987665433222
Q ss_pred ---HHHHHH-----H----HHHHHHHHHHhhccchhhHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh---C
Q 010325 117 ---LFNQYV-----A----IILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL---G 181 (513)
Q Consensus 117 ---~~~~~~-----a----~~i~t~lilifGEiiPK~la~~~~~~i~~~~a~~~~~l~~l~~Pl~~~~~~~~~~ll---g 181 (513)
.+..+. + +++.|+++++|||++||++|.+||++++.++++++++++++|+|++|++++++++++ |
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~ 161 (429)
T COG1253 82 LAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFG 161 (429)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222211 1 456788899999999999999999999999999999999999999999999998764 4
Q ss_pred CC---c--ccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHH
Q 010325 182 HN---E--ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKIL 256 (513)
Q Consensus 182 ~~---~--~~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~ 256 (513)
.+ + ...+.++++ +++ ++.+.|.++++|++|++++|+|++++|+++||||+++++++.+.+++ ++.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~ 235 (429)
T COG1253 162 VEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELIL 235 (429)
T ss_pred CCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHH
Confidence 33 2 345677777 775 56678999999999999999999999999999999999999999998 9999999
Q ss_pred hcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcc-cccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcc
Q 010325 257 ARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET-PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK 335 (513)
Q Consensus 257 ~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~-~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~ 335 (513)
+++|||+|||+++.|+++|++|.|||+.....++. .......+++++||+++++.++|++||+.+.|||+|+||||++.
T Consensus 236 ~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~ 315 (429)
T COG1253 236 ESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVE 315 (429)
T ss_pred hCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeE
Confidence 99999999999888999999999999987654432 22222356999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCC--CCccccccc-cccccCC
Q 010325 336 TLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS--DSTTNGLIY-ASEDIED 411 (513)
Q Consensus 336 Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~--~~t~~gl~~-~~~~~e~ 411 (513)
|++ |.+|++|+|+|++.++.....+..+.+..++.|.+++..+++++++.++..++.+ +.|++|++. ...+++.
T Consensus 316 GlV--TleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~~l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~ 392 (429)
T COG1253 316 GLV--TLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRVPLEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPK 392 (429)
T ss_pred EEe--EHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccccHHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCC
Confidence 999 9999999999999988754344455555555599999999999999999987554 999999999 7777773
No 5
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=100.00 E-value=6.7e-38 Score=336.13 Aligned_cols=427 Identities=46% Similarity=0.611 Sum_probs=342.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHH-HHHHHHHHHHhhhHHHHHHHHHHH
Q 010325 26 EGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKK-QAAAIFPVVQKQHQLLVTLLLCNA 104 (513)
Q Consensus 26 ~~~~~~s~~~~~~~~i~~~LlllsafFSg~E~Al~s~~~~~L~~l~~~g~~~~kk-~a~~il~l~~~~~~ll~Tll~~n~ 104 (513)
..+|+...+|++++.++++|++++++|||.++++++++-..++.+.+.|...+++ .++++....++.+++|+|+++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~ 82 (498)
T KOG2118|consen 3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS 82 (498)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence 4577888888888888888999999999999999999999999999999887765 788899999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 010325 105 ASMEA-LPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHN 183 (513)
Q Consensus 105 ~~~~~-~~~~~~~~~~~~~a~~i~t~lilifGEiiPK~la~~~~~~i~~~~a~~~~~l~~l~~Pl~~~~~~~~~~llg~~ 183 (513)
+++.+ ++.++....+.|.++.++++.+++|||++||++|.+|+..+++.+.+++++++++++|+.||++++ ++.+|..
T Consensus 83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~ 161 (498)
T KOG2118|consen 83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN 161 (498)
T ss_pred hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence 99999 888877777778899999999999999999999999999999999999999999999999999998 8888987
Q ss_pred c-ccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCce
Q 010325 184 E-ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSR 262 (513)
Q Consensus 184 ~-~~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr 262 (513)
. ..+.+.+++.++..+..|+.+ |.+..+|..++.+++++.++.++++|||..+++.++.+..+.++.+..+.++||||
T Consensus 162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sr 240 (498)
T KOG2118|consen 162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSR 240 (498)
T ss_pred cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcce
Confidence 6 567789999999999888776 89999999999999999999999999999999999999999988888999999999
Q ss_pred eeeeeCCCCcEEEEEEhhhhhccC----CCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCC
Q 010325 263 VPVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (513)
Q Consensus 263 ~PV~~~~~d~ivGiV~~kDLl~~~----~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv 338 (513)
+|||+.+..+.+|.+..+.++... .....++.+.+.++.+.+|+++++.+.++.|++.+.|++.|+. +....+++
T Consensus 241 ipv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~ 319 (498)
T KOG2118|consen 241 IPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVL 319 (498)
T ss_pred eeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeE
Confidence 999998878888888777777655 3345678888889999999999999999999999999999987 67778888
Q ss_pred CCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCcc--ccc--------cccccccCCCCccccccc-ccc
Q 010325 339 PMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSS--GSM--------NRLSSSQRSDSTTNGLIY-ASE 407 (513)
Q Consensus 339 ~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~--~~~--------~~~~~l~~~~~t~~gl~~-~~~ 407 (513)
|.+|+ +++.++..++.... ..+...+.++......... ... ...-..+..+..+.++.. ..+
T Consensus 320 --~l~~~-~~~~~ev~de~d~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
T KOG2118|consen 320 --TLEDL-EEVVKEVEDEEDKE----EIKFETGIFTLRGIGDLDAGAVTDIDQLGERSPIKERSPRSSESLLDSRKSAFE 392 (498)
T ss_pred --eccch-hhhcceeccccccc----cchhcccchhhcccccccccccchhhhhcccccccccCCCCCcccccccccccc
Confidence 99999 77776666654222 2222222222222211111 100 111111212222222221 111
Q ss_pred cc-CCC-ccceecchHHHHHHHhcCccCCCCchhhhhHHHHHHHhHHHhhhhccCCCcc
Q 010325 408 DI-EDG-EVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSR 464 (513)
Q Consensus 408 ~~-e~g-~liGIITleDv~eel~~~ei~de~d~~~~~~~~~~~~~~~~~~~~~r~~~~~ 464 (513)
+. +.+ .-.|+.|.+|++++..+++|.++.+.+...+++.+++..+ +.+++.|..+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~ 449 (498)
T KOG2118|consen 393 DLAELGEIGHSVLTLESVIEPDESERILSDLQLVKITRQQYRNALLA--SLMESLPQSP 449 (498)
T ss_pred ccccccccCccceehhhhhccccchhhhccccceechhhhhhhHhhh--hhhccCCCCC
Confidence 12 222 2467799999999999999999999999888888876432 3444444443
No 6
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=100.00 E-value=3.5e-33 Score=283.05 Aligned_cols=225 Identities=21% Similarity=0.271 Sum_probs=196.2
Q ss_pred HHHhCCCcccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHH
Q 010325 177 DWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKIL 256 (513)
Q Consensus 177 ~~llg~~~~~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~ 256 (513)
..++|.+. .+++||+.+++ ++.+.|.++++|+++++++|+|++++|+++|+||.++++++.+++++ ++++.+.
T Consensus 24 ~~~~~~~~--~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i~ 96 (292)
T PRK15094 24 SQLFHGEP--KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVII 96 (292)
T ss_pred HHHcCCCC--CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHHH
Confidence 33456443 58999999997 45567999999999999999999999999999999999999999999 9999999
Q ss_pred hcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC--cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCc
Q 010325 257 ARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKS 334 (513)
Q Consensus 257 ~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~--~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~ 334 (513)
+++|+|+|||+++.|+++|+|+.||++...... ...+.++ ++++++|++++++.++++.|++++.|++||+||||++
T Consensus 97 ~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~v 175 (292)
T PRK15094 97 ESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGV 175 (292)
T ss_pred hcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCE
Confidence 999999999987778999999999998543221 2346776 5777899999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC
Q 010325 335 KTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED 411 (513)
Q Consensus 335 ~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~ 411 (513)
+|++ |.+|++++++|++.++........+.+...+.|.+++.++++++++.++..++.. +.|++||++ ...+++.
T Consensus 176 iGiV--TleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~~~l~~~~~~Tl~G~i~~~l~~iP~ 252 (292)
T PRK15094 176 SGLV--TIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPA 252 (292)
T ss_pred EEEe--EHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHhCCCCCCCCCccHHHHHHHHhCcCCC
Confidence 9999 9999999999999987643333357778899999999999999999999998865 899999998 7777765
No 7
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.1e-33 Score=267.49 Aligned_cols=222 Identities=20% Similarity=0.251 Sum_probs=198.9
Q ss_pred HHHHHHHhCCCcccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHH
Q 010325 173 GKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAM 252 (513)
Q Consensus 173 ~~~~~~llg~~~~~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal 252 (513)
.++++.+|.. ..-+++||..++. .+++.+.++++-..|++++++..+++|+|||+||++++++..+.+++ +.+
T Consensus 20 e~L~~~~f~g--Epknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~l 92 (293)
T COG4535 20 ERLLSQLFHG--EPKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECL 92 (293)
T ss_pred HHHHHHHhcC--CCcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HHH
Confidence 3444444432 3446899999997 56667899999999999999999999999999999999999999999 999
Q ss_pred HHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc--ccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEec
Q 010325 253 GKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA 330 (513)
Q Consensus 253 ~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~--~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE 330 (513)
..+.+++||||||+.++.|++.||++.|||+.....+. ..+.++ .||+++|||+..+..+|+.|+.++.|||+||||
T Consensus 93 ~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIViDE 171 (293)
T COG4535 93 DVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE 171 (293)
T ss_pred HHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEEec
Confidence 99999999999999999999999999999998765432 456664 899999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCC-CCccccccc
Q 010325 331 KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY 404 (513)
Q Consensus 331 ~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~ 404 (513)
||++.|+| |.+||+|.|+|++.++...+.+..+.+..++.|.|+.-+++.+.|..++..+..+ ..|+|||+.
T Consensus 172 fGgVsGLV--TIEDiLEqIVGdIEDE~Deee~~dI~~ls~~~~~VrALT~IedFNe~F~t~FsDeevDTIGGLVm 244 (293)
T COG4535 172 FGGVSGLV--TIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEIEDFNEAFGTHFSDEEVDTIGGLVM 244 (293)
T ss_pred cCCeeeeE--EHHHHHHHHhcccccccchhhhhhhHhhcCCceEEEecccHHHHHHHhcCCCChhhhhhhhHHHH
Confidence 99999999 9999999999999998876666679999999999999999999999999988877 999999886
No 8
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.94 E-value=1.2e-25 Score=212.42 Aligned_cols=167 Identities=27% Similarity=0.482 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---
Q 010325 39 AGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLD--- 115 (513)
Q Consensus 39 ~~i~~~LlllsafFSg~E~Al~s~~~~~L~~l~~~g~~~~kk~a~~il~l~~~~~~ll~Tll~~n~~~~~~~~~~~~--- 115 (513)
+++++++++++||||++|+|++++++.+++.++++|+ ++++++.++++||+++++|++++|++++.+.+.+..
T Consensus 3 l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~----~~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~ 78 (183)
T PF01595_consen 3 LLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGD----KRARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLA 78 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC----HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778899999999999999999999999999988 478899999999999999999999998877664433
Q ss_pred -HHHHH----HHHHHHHHHHHHHhhccchhhHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCC---c
Q 010325 116 -KLFNQ----YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL---GHN---E 184 (513)
Q Consensus 116 -~~~~~----~~a~~i~t~lilifGEiiPK~la~~~~~~i~~~~a~~~~~l~~l~~Pl~~~~~~~~~~ll---g~~---~ 184 (513)
.+++. +++++++++++++|||++||++|.+||++++.+.++++++++++++|++|++.++.++++ |.+ +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~ 158 (183)
T PF01595_consen 79 SNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEED 158 (183)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 22332 356667788889999999999999999999999999999999999999999999888764 433 2
Q ss_pred ccccHHHHHHHHHHhhhhhccCCCCChhH
Q 010325 185 ALFRRAQLKALVTIHSQEAGKGGELTHDE 213 (513)
Q Consensus 185 ~~~s~eeL~~lv~~~~~e~~~~g~L~~~E 213 (513)
..+++||++.+++ +++++|.++++|
T Consensus 159 ~~~s~eel~~lv~----~~~e~G~i~~~E 183 (183)
T PF01595_consen 159 PAVSEEELRSLVE----EGEEEGVIEEEE 183 (183)
T ss_pred CCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence 5789999999998 556679999876
No 9
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.70 E-value=1.1e-15 Score=149.91 Aligned_cols=136 Identities=15% Similarity=0.294 Sum_probs=116.1
Q ss_pred cccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhc-------CcccccccccccCccEEEEeCCCCccHHHHHHHHhc
Q 010325 186 LFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALD-------LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR 258 (513)
Q Consensus 186 ~~s~eeL~~lv~~~~~e~~~~g~L~~~E~~~I~~vl~-------l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~ 258 (513)
.|+.+|+.+.++ +.+|.-+|+.++.+.+.+-.+ +.+.++.|||++ ++++++.+++++ ++.+++.++
T Consensus 202 gfs~~Dld~aL~----~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQ----RLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHH----hcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 588999999886 445556788877665544433 478999999997 999999999999 999999999
Q ss_pred CCceeeeeeCCCCcEEEEEEhhhhhccCCC---------CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 259 GHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 259 ~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---------~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
++..+||.|++ .+++|+|+.+||+..... ....++.+|..++.+|.++++..+++..|.+.+.|..||+|
T Consensus 275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld 353 (382)
T COG3448 275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD 353 (382)
T ss_pred Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence 99999999876 799999999999862211 24578899888999999999999999999999999999999
No 10
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.69 E-value=1e-16 Score=172.33 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=112.4
Q ss_pred cccHHHHHHHHHHhhhhhccC------CCCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHh--
Q 010325 186 LFRRAQLKALVTIHSQEAGKG------GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILA-- 257 (513)
Q Consensus 186 ~~s~eeL~~lv~~~~~e~~~~------g~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~-- 257 (513)
.++.+|+..+++. ..++ +.++++|+++++++++|++.+|+++|++ ++++++.++++. ++++.+++
T Consensus 89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 4677888888862 2222 4799999999999999999999999996 899999999999 99999985
Q ss_pred -cCCc--eeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 258 -RGHS--RVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 258 -~~~s--r~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
.+++ .++|.++ .++++|+|+.+|++... ++.+++++|.++++++++++++.++++.|++++.+.+||||
T Consensus 162 ~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a~--~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD 233 (449)
T TIGR00400 162 KTKEDIYTLYVTNE-SKHLKGVLSIRDLILAK--PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD 233 (449)
T ss_pred CCccceeEEEEECC-CCeEEEEEEHHHHhcCC--CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc
Confidence 2333 4455554 48999999999998653 34679999888888999999999999999999999999999
No 11
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.60 E-value=5.6e-15 Score=158.71 Aligned_cols=150 Identities=15% Similarity=0.250 Sum_probs=129.8
Q ss_pred ccccHHHHHHHHHHhhhhhccCCCCCh-----hHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcC
Q 010325 185 ALFRRAQLKALVTIHSQEAGKGGELTH-----DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG 259 (513)
Q Consensus 185 ~~~s~eeL~~lv~~~~~e~~~~g~L~~-----~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~ 259 (513)
...|++|+..++.. .+..|.|++ +|++++++++++++. |++ ++++++++.++. ++++.+.+++
T Consensus 43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 56799999999863 334678884 899999999988765 554 778999999999 9999999999
Q ss_pred CceeeeeeCCC--CcEEEEEEhhhhhccCCCCccccccccc-ccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCccc
Q 010325 260 HSRVPVYSGNP--KNIIGLLLVKSLLTVRPETETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT 336 (513)
Q Consensus 260 ~sr~PV~~~~~--d~ivGiV~~kDLl~~~~~~~~~v~dim~-~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~G 336 (513)
++++||++++. ++++|+|+.+|++... ....++.++|. .+++++++++++.++++.|++++.+.+||+|++|.+.|
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvG 189 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITKRDIRFVK-DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVG 189 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEHHHHhhhh-cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence 99999998754 6999999999998543 23467889877 48999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccc
Q 010325 337 LPPMTDGKKPKLN 349 (513)
Q Consensus 337 iv~~T~~dile~i 349 (513)
++ |.+|+++++
T Consensus 190 iV--T~~DIl~~~ 200 (450)
T TIGR01302 190 LI--TMKDIVKRR 200 (450)
T ss_pred EE--EhHHhhhcc
Confidence 99 999999886
No 12
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.58 E-value=3e-15 Score=144.53 Aligned_cols=108 Identities=17% Similarity=0.298 Sum_probs=99.5
Q ss_pred HHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--Cccccc
Q 010325 217 ISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVS 294 (513)
Q Consensus 217 I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--~~~~v~ 294 (513)
+.++....+.+|+++|++ +++++.+|.|+. |+.+.+.++++...||+++ |+++|+++..|+..+..+ .+.+|+
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~ 237 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS 237 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence 456677899999999997 999999999998 9999999999999999986 599999999999886655 347899
Q ss_pred ccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 295 AVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 295 dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
++|.+.+++|.+|+.+.||++.|.+++...++|+|
T Consensus 238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d 272 (294)
T COG2524 238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD 272 (294)
T ss_pred HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEc
Confidence 99999999999999999999999999999999999
No 13
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.51 E-value=5.2e-14 Score=141.13 Aligned_cols=103 Identities=21% Similarity=0.319 Sum_probs=95.4
Q ss_pred CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccce
Q 010325 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP 302 (513)
Q Consensus 223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~ 302 (513)
-+=++|.|||+|..+..++..+++++ +..++..++||+||||++.. .+++|+|+.||+.... +.+++..+|.+.+.
T Consensus 185 kdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~--~~t~ieKVMtknp~ 260 (432)
T COG4109 185 KDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKK--PSTTIEKVMTKNPI 260 (432)
T ss_pred hheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCC--CCccHHHHhccCCe
Confidence 35578999999999999999999999 99999999999999999875 7899999999998763 46788899999999
Q ss_pred eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 303 RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+|.+.+++..+.+.|-..+..|.||+|
T Consensus 261 tv~~~tsVAsvaq~MiwE~iem~PVv~ 287 (432)
T COG4109 261 TVRAKTSVASVAQMMIWEGIEMLPVVD 287 (432)
T ss_pred eecccchHHHHHHHHHhccceeeeEEc
Confidence 999999999999999999999999999
No 14
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.50 E-value=3.8e-14 Score=150.59 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=103.4
Q ss_pred CCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCC-----ceeeeeeCCCCcEEEEEEhhhh
Q 010325 208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH-----SRVPVYSGNPKNIIGLLLVKSL 282 (513)
Q Consensus 208 ~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~-----sr~PV~~~~~d~ivGiV~~kDL 282 (513)
.++++|++.++..+.+.+.+++.+|+. +++++..+.|++ +++.++++.+. ..+.|+|.+ ++++|+++.++|
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L 189 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL 189 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence 588999999999999999999999996 999999999999 99999996543 344555554 789999999999
Q ss_pred hccCCCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 283 LTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 283 l~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+.. +++.+++++|.+.+++|+.+++.+++.+.|++|+.-.+||||
T Consensus 190 l~a--~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd 234 (451)
T COG2239 190 LTA--EPDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD 234 (451)
T ss_pred hcC--CcHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence 976 346789999988899999999999999999999999999999
No 15
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.42 E-value=1.7e-12 Score=140.95 Aligned_cols=150 Identities=20% Similarity=0.281 Sum_probs=127.5
Q ss_pred ccccHHHHHHHHHHhhhhhccCCCCC-----hhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcC
Q 010325 185 ALFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG 259 (513)
Q Consensus 185 ~~~s~eeL~~lv~~~~~e~~~~g~L~-----~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~ 259 (513)
..++++|+...+. +.+.-|.|. +++.++++++++++ ++|.+ ++++++.+.++. ++++.+.+++
T Consensus 50 ~~vT~~ela~ava----~~GglG~i~~~~~~e~~~~~I~~vk~~~-----dim~~--~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMA----REGGIGVIHKNMSIEEQAEEVRKVKRSE-----SGVVT--DPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHH----hCCCCCEecCCCCHHHHHHHHHHhhhhh-----hcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence 4678999999986 344456677 47889999998754 56764 888999999999 9999999999
Q ss_pred CceeeeeeCCCCcEEEEEEhhhhhccCCCCccccccccc-ccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCC
Q 010325 260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (513)
Q Consensus 260 ~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~-~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv 338 (513)
++++||++++ ++++|+|+.+|+.... ....++.++|. ++++++++++++.++++.|.+++.+.+||+|++|.+.|++
T Consensus 118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiI 195 (486)
T PRK05567 118 ISGVPVVDEN-GKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195 (486)
T ss_pred CCEEEEEccC-CEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence 9999999864 8999999999997543 23467888887 7889999999999999999999999999999999999999
Q ss_pred CCCCCCCccccc
Q 010325 339 PMTDGKKPKLNE 350 (513)
Q Consensus 339 ~~T~~dile~i~ 350 (513)
|.+|+++.+.
T Consensus 196 --T~~DLl~~~~ 205 (486)
T PRK05567 196 --TVKDIEKAEE 205 (486)
T ss_pred --EhHHhhhhhh
Confidence 8888887753
No 16
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=4.3e-12 Score=109.38 Aligned_cols=91 Identities=27% Similarity=0.390 Sum_probs=79.2
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC--cccccccccccceeeCCCCCHHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDIL 314 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~--~~~v~dim~~~~~~Vpe~~~l~d~L 314 (513)
++++++.+.++. ++++.|.+++++++||++++ ++++|+++.+|+.....+. ..++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence 467789999998 99999999999999999864 7999999999998643221 2468888888888999999999999
Q ss_pred HHHHhCCceEEEEEe
Q 010325 315 NEFQKGSSHMAAVVK 329 (513)
Q Consensus 315 ~~m~~~~~~~a~VVD 329 (513)
+.|.+++.+.+||+|
T Consensus 80 ~~m~~~~~~~lpVvd 94 (111)
T cd04603 80 RIFRETEPPVVAVVD 94 (111)
T ss_pred HHHHHcCCCeEEEEc
Confidence 999999999999999
No 17
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=5.4e-12 Score=110.05 Aligned_cols=91 Identities=15% Similarity=0.219 Sum_probs=74.6
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc-----ccccc------cccccceeeC
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-----TPVSA------VSIRRIPRVP 305 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~-----~~v~d------im~~~~~~Vp 305 (513)
++.+++++.++. ++++.+.+++++++||++++ ++++|+++.+|++....++. ..+.+ +|..++.+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 567899999998 99999999999999999864 89999999999986432211 11222 2334568999
Q ss_pred CCCCHHHHHHHHHhCCceEEEEEe
Q 010325 306 SDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 306 e~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~l~~~~~~m~~~~~~~l~Vvd 103 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVD 103 (120)
T ss_pred CCCcHHHHHHHHHhcCccEEEEEC
Confidence 999999999999999999999999
No 18
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=8.3e-12 Score=105.98 Aligned_cols=79 Identities=14% Similarity=0.348 Sum_probs=71.2
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~ 316 (513)
++++++++.++. ++.+.|.+++++.+||++++.++++|+++.+|+..... +.++.+++++.++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence 678899999998 99999999999999999864478999999999985311 6789999999999999
Q ss_pred HHhCCceEEEEEe
Q 010325 317 FQKGSSHMAAVVK 329 (513)
Q Consensus 317 m~~~~~~~a~VVD 329 (513)
|.+++.+.+||+|
T Consensus 68 m~~~~~~~lpVvd 80 (98)
T cd04618 68 LLKNKIHRLPVID 80 (98)
T ss_pred HHHCCCCEeeEEE
Confidence 9999999999999
No 19
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.34 E-value=5.1e-12 Score=136.25 Aligned_cols=99 Identities=15% Similarity=0.206 Sum_probs=88.8
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceee
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRV 304 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~V 304 (513)
..+++++|++ ++++++++.++. ++.+.|.+++++.+||++++ ++++|+|+.+|+.... ...++.++|.++++++
T Consensus 88 ~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~--~~~~V~diMt~~~itV 161 (479)
T PRK07807 88 WVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVD--RFTQVRDVMSTDLVTL 161 (479)
T ss_pred hccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCc--cCCCHHHhccCCceEE
Confidence 4567899985 888999999999 99999999999999999864 7899999999997542 2367999999999999
Q ss_pred CCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 305 PSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 305 pe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
++++++.++++.|.+++.+.+||+|
T Consensus 162 ~~d~sL~eAl~lM~~~~i~~LPVVD 186 (479)
T PRK07807 162 PAGTDPREAFDLLEAARVKLAPVVD 186 (479)
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEEc
Confidence 9999999999999999999999999
No 20
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=6.2e-12 Score=107.40 Aligned_cols=91 Identities=12% Similarity=0.258 Sum_probs=79.7
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~ 316 (513)
++.+++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++........++.++|.+++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 567789999998 99999999999999999865 8999999999998654333345778877889999999999999999
Q ss_pred HHhCCceEEEEEe
Q 010325 317 FQKGSSHMAAVVK 329 (513)
Q Consensus 317 m~~~~~~~a~VVD 329 (513)
|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~Vv~ 93 (110)
T cd04605 81 MERHNISALPVVD 93 (110)
T ss_pred HHHhCCCEEeEEC
Confidence 9999999999999
No 21
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=7.7e-12 Score=106.89 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=78.7
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC-----cccccccccccceeeCCCCCHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETPVSAVSIRRIPRVPSDMPLY 311 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~-----~~~v~dim~~~~~~Vpe~~~l~ 311 (513)
++++++.+.++. ++++.+.+.+++++||++++ ++++|+++.+|++...... ..++.++|.+++.++++++++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD 79 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence 567789999998 99999999999999999865 7999999999998643221 3467888778889999999999
Q ss_pred HHHHHHHhCCceEEEEEe
Q 010325 312 DILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 312 d~L~~m~~~~~~~a~VVD 329 (513)
++++.|.+.+.+.+||+|
T Consensus 80 ~~l~~~~~~~~~~~~Vv~ 97 (113)
T cd04623 80 EAMALMTERRFRHLPVVD 97 (113)
T ss_pred HHHHHHHHcCCCEeEEEe
Confidence 999999999999999998
No 22
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=6.8e-12 Score=107.22 Aligned_cols=90 Identities=19% Similarity=0.229 Sum_probs=80.1
Q ss_pred ccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHH
Q 010325 236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN 315 (513)
Q Consensus 236 ~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~ 315 (513)
+++.+++.+++++ ++.+.+.+++++++||++++ ++++|+++.+|++... .+.++.++|..++.++++++++.++++
T Consensus 2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~ 77 (108)
T cd04596 2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTSVASVAH 77 (108)
T ss_pred CccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCCHHHHHH
Confidence 4678899999998 99999999999999999864 8899999999998642 345788888788899999999999999
Q ss_pred HHHhCCceEEEEEe
Q 010325 316 EFQKGSSHMAAVVK 329 (513)
Q Consensus 316 ~m~~~~~~~a~VVD 329 (513)
.|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~~Vv~ 91 (108)
T cd04596 78 MMIWEGIEMLPVVD 91 (108)
T ss_pred HHHHcCCCeeeEEc
Confidence 99999999999999
No 23
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=6e-12 Score=107.82 Aligned_cols=91 Identities=14% Similarity=0.203 Sum_probs=79.1
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC---cccccccccccceeeCCCCCHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---ETPVSAVSIRRIPRVPSDMPLYDI 313 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~---~~~v~dim~~~~~~Vpe~~~l~d~ 313 (513)
++..++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++...... +.++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 566789999998 99999999999999999764 7899999999998643321 246778888888999999999999
Q ss_pred HHHHHhCCceEEEEEe
Q 010325 314 LNEFQKGSSHMAAVVK 329 (513)
Q Consensus 314 L~~m~~~~~~~a~VVD 329 (513)
++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~Vv~ 95 (111)
T cd04626 80 LDIMREKQIGRLPVVD 95 (111)
T ss_pred HHHHHHcCCCeeeEeE
Confidence 9999999999999999
No 24
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.33 E-value=4.2e-12 Score=131.05 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=89.9
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----Ccccccccccc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIR 299 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~ 299 (513)
...+|+++|++.+++.++++++++. ++++.|.++++..+||++++ ++++|+|+.+|+...... .+.++.++|.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 6678999999655889999999999 99999999888777877754 799999999998754322 23579999989
Q ss_pred cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
++.++.+++++.++++.|.+++.+.+||+|
T Consensus 278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~ 307 (326)
T PRK10892 278 GGIRVRPGILAVDALNLMQSRHITSVLVAD 307 (326)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCcEEEEee
Confidence 999999999999999999999999999998
No 25
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.32 E-value=1.1e-11 Score=131.72 Aligned_cols=128 Identities=18% Similarity=0.155 Sum_probs=101.0
Q ss_pred cccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEEEecC-CCcccCCCCCCCCCccccccCCCCCCCCccccccc
Q 010325 290 ETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ 366 (513)
Q Consensus 290 ~~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~-G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~ 366 (513)
+.+++++|.. ++.+++.++++.++++.|.+++....||+++. +.++|++ +.+|++....+ .. ....
T Consensus 190 ~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv--~~kDll~~~~~----~~-----~~l~ 258 (408)
T TIGR03520 190 NTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVL--YIKDLLPHLNK----KN-----FDWQ 258 (408)
T ss_pred CCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEE--EHHHHHhHhcc----CC-----CCHH
Confidence 4678899874 68899999999999999999999999999874 7899999 88898754332 11 1123
Q ss_pred cccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHhcCccCCCCch
Q 010325 367 DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE 438 (513)
Q Consensus 367 ~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~~~ei~de~d~ 438 (513)
+...+.++|+.++++.++-+.|+.........+ . |+|+++||||+|||+|+++| ||.||+|.
T Consensus 259 ~~~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVv-----D----E~G~~~GiVT~eDileeivg-ei~de~d~ 320 (408)
T TIGR03520 259 SLLREPYFVPENKKLDDLLRDFQEKKNHLAIVV-----D----EYGGTSGLVTLEDIIEEIVG-DISDEFDD 320 (408)
T ss_pred HHcCCCeEeCCCCcHHHHHHHHHhcCceEEEEE-----c----CCCCEEEEEEHHHHHHHHhC-CCCCcCCc
Confidence 334568999999999998888876544332222 2 78999999999999999997 99999874
No 26
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=9.8e-12 Score=107.28 Aligned_cols=92 Identities=16% Similarity=0.219 Sum_probs=79.1
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC-----CCCcccccccccccceeeCCCCCHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR-----PETETPVSAVSIRRIPRVPSDMPLY 311 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~-----~~~~~~v~dim~~~~~~Vpe~~~l~ 311 (513)
++.+++.+.++. ++++.+.+++++.+||++++.++++|+++.+|++... .....++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK 80 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence 677899999998 9999999999999999986437899999999998631 1123467888878889999999999
Q ss_pred HHHHHHHhCCceEEEEEe
Q 010325 312 DILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 312 d~L~~m~~~~~~~a~VVD 329 (513)
++++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~~Vvd 98 (114)
T cd04630 81 YCARLMERTNIRRAPVVE 98 (114)
T ss_pred HHHHHHHHcCCCEeeEee
Confidence 999999999999999999
No 27
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.30 E-value=1.1e-11 Score=105.96 Aligned_cols=92 Identities=41% Similarity=0.624 Sum_probs=77.8
Q ss_pred ccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc--ccccccccccceeeCCCCCHHHH
Q 010325 236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRIPRVPSDMPLYDI 313 (513)
Q Consensus 236 ~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~--~~v~dim~~~~~~Vpe~~~l~d~ 313 (513)
+++++++.+.++. ++.+.|.+.+++.+||++++.++++|+++.+|++.....+. .++.++ ++++.++++++++.++
T Consensus 1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~ 78 (111)
T cd04590 1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDL 78 (111)
T ss_pred CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHH
Confidence 3678899999998 99999999999999999764378999999999987543221 345564 5778899999999999
Q ss_pred HHHHHhCCceEEEEEe
Q 010325 314 LNEFQKGSSHMAAVVK 329 (513)
Q Consensus 314 L~~m~~~~~~~a~VVD 329 (513)
++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~Vv~ 94 (111)
T cd04590 79 LEEMRKERSHMAIVVD 94 (111)
T ss_pred HHHHHhcCCcEEEEEE
Confidence 9999999999999999
No 28
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=1.4e-11 Score=107.60 Aligned_cols=91 Identities=19% Similarity=0.370 Sum_probs=79.2
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC--------------cccccccccccce
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--------------ETPVSAVSIRRIP 302 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~--------------~~~v~dim~~~~~ 302 (513)
++.+++.+.++. ++.+.+.+.+++++||++++ ++++|+|+.+|++...... ..++.++|.+++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 677899999998 99999999999999999865 8999999999997543221 2357788888899
Q ss_pred eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 303 RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
++++++++.++++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~ 107 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVD 107 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEc
Confidence 999999999999999999999999999
No 29
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=1.4e-11 Score=106.46 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=79.3
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-----CCcccccccccccceeeCCCCCHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLY 311 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~-----~~~~~v~dim~~~~~~Vpe~~~l~ 311 (513)
++..++.++++. ++.+.+.+.++..+||++++ ++++|+++.+|++.... ....++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH 79 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence 466788999998 99999999999999999865 78999999999886432 123568888888899999999999
Q ss_pred HHHHHHHhCCceEEEEEe
Q 010325 312 DILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 312 d~L~~m~~~~~~~a~VVD 329 (513)
++++.|.+++.+.+||+|
T Consensus 80 ~a~~~m~~~~~~~lpVvd 97 (114)
T cd04619 80 DVWQVMKQRGLKNIPVVD 97 (114)
T ss_pred HHHHHHHHcCCCeEEEEC
Confidence 999999999999999999
No 30
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.30 E-value=9.3e-12 Score=126.32 Aligned_cols=168 Identities=18% Similarity=0.219 Sum_probs=126.3
Q ss_pred HHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEE
Q 010325 250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAV 327 (513)
Q Consensus 250 eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~V 327 (513)
|-++-+.+..++..|++..+.+.+.|++..++ ..|+|+|+. .+..+..+.+.+++.+++........||
T Consensus 168 EElR~~v~~~~~e~~~~~~~rdmL~gvLDLe~---------~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRipl 238 (423)
T COG4536 168 EELRTAVNESGSEGSVNKIDRDMLLGVLDLEN---------LTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPL 238 (423)
T ss_pred HHHHHHHHHhhcccccccccHHHHhccccccc---------ceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceee
Confidence 55667777788899998866788999987754 457888863 4567999999999999988776555555
Q ss_pred E-ecCCCcccCCCCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCCCCccccccccc
Q 010325 328 V-KAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYAS 406 (513)
Q Consensus 328 V-DE~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~ 406 (513)
. |.-+.++|++ ..+|+++.......+. ...+.+...++|+|+..+++...-.+|+.+.- .-|+++.
T Consensus 239 yr~~~DnIiGvl--h~r~llr~l~e~~~~~-----k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~-----hialVVD- 305 (423)
T COG4536 239 YRDDLDNIIGVL--HVRDLLRLLNEKNEFT-----KEDILRAADEPYFVPEGTPLSDQLVAFQRNKK-----HIALVVD- 305 (423)
T ss_pred ecCChhHhhhhh--hHHHHHHHhhccCccc-----HhHHHHHhcCCeecCCCCcHHHHHHHHHHhcc-----eEEEEEe-
Confidence 4 6677799999 7778777765333211 11344566999999999999777777765433 3455555
Q ss_pred cccCCCccceecchHHHHHHHhcCccCCCCchhhhhH
Q 010325 407 EDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVH 443 (513)
Q Consensus 407 ~~~e~g~liGIITleDv~eel~~~ei~de~d~~~~~~ 443 (513)
|+|.+.|+||+|||+||++| |+.||+|...+..
T Consensus 306 ---EYG~i~GLVTLEDIlEEIVG-dftde~d~~~~ev 338 (423)
T COG4536 306 ---EYGDIQGLVTLEDILEEIVG-DFTDEHDTLAKEV 338 (423)
T ss_pred ---ccCcEEeeeeHHHHHHHHhc-cccccCcccchhh
Confidence 99999999999999999998 8889988766543
No 31
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.29 E-value=5.4e-12 Score=136.95 Aligned_cols=119 Identities=16% Similarity=0.185 Sum_probs=95.2
Q ss_pred hhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCC
Q 010325 211 HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPE 288 (513)
Q Consensus 211 ~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~--~d~ivGiV~~kDLl~~~~~ 288 (513)
++..+.++.+++++ ..|++ ++++++++.++. ++++.+.+++++.+||++++ .++++|+|+.+|+.... .
T Consensus 90 E~q~~~Irkvk~~~-----~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~ 160 (505)
T PLN02274 90 EEQAAIVRKAKSRR-----VGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-D 160 (505)
T ss_pred HHHHHHHHHhhccc-----ccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-c
Confidence 34566777777543 22664 888999999999 99999999999999999863 36899999999997543 3
Q ss_pred Cccccccccccc--ceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCC
Q 010325 289 TETPVSAVSIRR--IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (513)
Q Consensus 289 ~~~~v~dim~~~--~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv 338 (513)
.+.++.++|.++ ++++++++++.++++.|++++.+.+||||+.|.++|++
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvI 212 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLV 212 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEE
Confidence 457799998766 77999999999999999999999999999433333333
No 32
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.29 E-value=1.4e-11 Score=106.35 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=78.0
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccccceeeCCCCCHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD 312 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~~~Vpe~~~l~d 312 (513)
++..+++++++. ++.+.+.+.+++++||++++ ++++|+++.+||+....+ ...++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 79 (115)
T cd04593 2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAH 79 (115)
T ss_pred CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHH
Confidence 345678999998 99999999999999999865 899999999999864322 123477888888999999999999
Q ss_pred HHHHHHhCCceEEEEEe
Q 010325 313 ILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 313 ~L~~m~~~~~~~a~VVD 329 (513)
+++.|.+++.+.+||+|
T Consensus 80 ~l~~~~~~~~~~~~Vvd 96 (115)
T cd04593 80 ALDRMASRGLRQLPVVD 96 (115)
T ss_pred HHHHHHHcCCceeeEEe
Confidence 99999999999999999
No 33
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=1.8e-11 Score=107.03 Aligned_cols=92 Identities=16% Similarity=0.276 Sum_probs=78.8
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC---------------cccccccccccc
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------------ETPVSAVSIRRI 301 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~---------------~~~v~dim~~~~ 301 (513)
++.+++.+.++. ++++.+.+++++++||++++.++++|+|+.+|++....+. ..++.+++.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 566789999998 9999999999999999986447899999999998643221 236777777788
Q ss_pred eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 302 PRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+++++++++.++++.|++.+.+.+||+|
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 108 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVD 108 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEc
Confidence 9999999999999999999999999998
No 34
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.27 E-value=9.3e-12 Score=128.10 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=88.8
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC---CCcccccccccccc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP---ETETPVSAVSIRRI 301 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~---~~~~~v~dim~~~~ 301 (513)
..+|+++|++..++.++++++++. ++.+.+.+++.+.+||++++ ++++|+|+.+|+..... ..+.++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 467999999732388999999998 99999999999999999865 89999999988875321 12456889988889
Q ss_pred eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 302 PRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
.+++++.++.++++.|.+++...+||||
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd 301 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVD 301 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 9999999999999999999999999999
No 35
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=2.6e-11 Score=106.77 Aligned_cols=91 Identities=16% Similarity=0.236 Sum_probs=75.9
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcc----c-------------ccccccc
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET----P-------------VSAVSIR 299 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~----~-------------v~dim~~ 299 (513)
++++++.+.++. ++++.|.+++++++||++++ ++++|+++.+|++....+... + ..+.+.+
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 577899999998 99999999999999999865 899999999999865422111 0 1134567
Q ss_pred cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
++.++++++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd 109 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVD 109 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEEC
Confidence 788999999999999999999999999999
No 36
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=2.3e-11 Score=104.20 Aligned_cols=91 Identities=20% Similarity=0.305 Sum_probs=78.2
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---CcccccccccccceeeCCCCCHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDI 313 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---~~~~v~dim~~~~~~Vpe~~~l~d~ 313 (513)
++..++.+.++. ++.+.+.+.+++++||++++ ++++|+++.+|++....+ ...++.++|.++++.+++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence 455688999998 99999999999999999865 899999999999764322 2346778888888999999999999
Q ss_pred HHHHHhCCceEEEEEe
Q 010325 314 LNEFQKGSSHMAAVVK 329 (513)
Q Consensus 314 L~~m~~~~~~~a~VVD 329 (513)
++.|.+++...+||+|
T Consensus 80 ~~~~~~~~~~~~~Vv~ 95 (112)
T cd04624 80 AKLMRKNNIRHHLVVD 95 (112)
T ss_pred HHHHHHcCccEEEEEc
Confidence 9999999999999999
No 37
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.26 E-value=3.5e-11 Score=102.61 Aligned_cols=90 Identities=22% Similarity=0.331 Sum_probs=78.6
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---CcccccccccccceeeCCCCCHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDI 313 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---~~~~v~dim~~~~~~Vpe~~~l~d~ 313 (513)
++.+++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|++..... ...++.++|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence 566789999998 9999999999999999976 799999999999865422 2456888888888999999999999
Q ss_pred HHHHHhCCceEEEEEe
Q 010325 314 LNEFQKGSSHMAAVVK 329 (513)
Q Consensus 314 L~~m~~~~~~~a~VVD 329 (513)
++.|.+.+.+.+||+|
T Consensus 79 l~~~~~~~~~~~~Vv~ 94 (111)
T cd04611 79 RQLMREHGIRHLVVVD 94 (111)
T ss_pred HHHHHHcCCeEEEEEC
Confidence 9999999999999998
No 38
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=2.2e-11 Score=104.11 Aligned_cols=91 Identities=29% Similarity=0.451 Sum_probs=78.7
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--CcccccccccccceeeCCCCCHHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDIL 314 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--~~~~v~dim~~~~~~Vpe~~~l~d~L 314 (513)
++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|+...... .+.++.++|.++++++++++++.+++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 79 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL 79 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence 566788999998 99999998999999999864 789999999999764221 23478888888899999999999999
Q ss_pred HHHHhCCceEEEEEe
Q 010325 315 NEFQKGSSHMAAVVK 329 (513)
Q Consensus 315 ~~m~~~~~~~a~VVD 329 (513)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~Vv~ 94 (111)
T cd04639 80 RLMQQGGAPAVPVVD 94 (111)
T ss_pred HHHHhcCCceeeEEc
Confidence 999999999999998
No 39
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.25 E-value=1.3e-11 Score=111.44 Aligned_cols=93 Identities=19% Similarity=0.279 Sum_probs=80.7
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC-----ccccccccc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETPVSAVSI 298 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~-----~~~v~dim~ 298 (513)
..++++.+|+. .++.+.+++++. ++.+.|.++|+|.+||+++ |+++|-|+..++.....++ ...++++|-
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~ 137 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGMESIRSLRVREVMG 137 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccccchhhhhHHHHhc
Confidence 45789999995 999999999999 9999999999999999986 7999999999998765432 357889999
Q ss_pred ccceeeCCCCCHHHHHHHHHhCC
Q 010325 299 RRIPRVPSDMPLYDILNEFQKGS 321 (513)
Q Consensus 299 ~~~~~Vpe~~~l~d~L~~m~~~~ 321 (513)
.++++|.++.++..+-..+..+.
T Consensus 138 e~fP~Vs~~~~l~vI~~LL~~~~ 160 (187)
T COG3620 138 EPFPTVSPDESLNVISQLLEEHP 160 (187)
T ss_pred CCCCcCCCCCCHHHHHHHHhhCC
Confidence 99999999999988877776654
No 40
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=2.5e-11 Score=106.30 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=74.9
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC--c-----------cccccccccccee
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--E-----------TPVSAVSIRRIPR 303 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~--~-----------~~v~dim~~~~~~ 303 (513)
++..++.++++. ++++.+.+++++++||++++.++++|+++.+|++....+. . ..+.++|.+++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 467789999998 9999999999999999986436899999999987632111 0 0112345677889
Q ss_pred eCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 304 VPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 304 Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+++++++.++++.|.+++.+.+||+|
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd 106 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVD 106 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEEC
Confidence 99999999999999999999999999
No 41
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.25 E-value=3e-11 Score=108.46 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=78.9
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC---------------------------
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--------------------------- 289 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~--------------------------- 289 (513)
++.+++.++++. ++++.+.+.+++++||++++ ++++|+++.+|++......
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 567789999998 99999999999999999864 8999999999998653211
Q ss_pred cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 290 ~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
..+++++|..++.+|++++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~ 119 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD 119 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 2367888877888999999999999999999999999998
No 42
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.25 E-value=1.9e-11 Score=135.64 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=89.6
Q ss_pred CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC---C-Cccccccccc
Q 010325 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP---E-TETPVSAVSI 298 (513)
Q Consensus 223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~---~-~~~~v~dim~ 298 (513)
++..+|+|+|++ +...++.+++++ |+.+.+.+++++.+||+|++ ++++|+|+.+|+.+... + .+.++.++|.
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 566789999987 667899999998 99999999999999999865 78999999999986321 1 2356888888
Q ss_pred ccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 299 ~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+++.++++++++.++++.|.+++.+.+||+|
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd 550 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVE 550 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEe
Confidence 8889999999999999999999999999999
No 43
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=3.6e-11 Score=104.61 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=78.4
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-------------Cccccccccccccee
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-------------TETPVSAVSIRRIPR 303 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-------------~~~~v~dim~~~~~~ 303 (513)
++.++..+.++. ++.+.+.+.+++++||++++ ++++|+++.+|++..... ...++.+++.+++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence 456788999998 99999999999999999865 799999999999864321 234677777788899
Q ss_pred eCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 304 VPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 304 Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+++++++.++++.|++++.+.+||+|
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04803 80 VTPDTPLREAAEIMVENKIGCLPVVD 105 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEEEEc
Confidence 99999999999999999999999998
No 44
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.25 E-value=2e-11 Score=132.39 Aligned_cols=127 Identities=13% Similarity=0.149 Sum_probs=99.5
Q ss_pred hhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCC
Q 010325 211 HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPE 288 (513)
Q Consensus 211 ~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~--~d~ivGiV~~kDLl~~~~~ 288 (513)
++++++++.+.++.. +.++.| .++++++++. ++++.|.+++++.+||++++ .++++|+|+.+|+......
T Consensus 87 e~qa~lV~kVk~~~~---g~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~ 158 (502)
T PRK07107 87 ESEAAMVRRVKNYKA---GFVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMS 158 (502)
T ss_pred HHHHHHHHHHHHHhc---CCcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccC
Confidence 455666666655442 222332 4789999999 99999999999999999852 4799999999999754323
Q ss_pred Ccccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCcc
Q 010325 289 TETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK 347 (513)
Q Consensus 289 ~~~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile 347 (513)
.+.+++++|.. +++++++++++.++++.|.+++.+.+||+|+.|.++|++ |.+|+++
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGII--T~~Dilk 217 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLV--FRKDYDS 217 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEE--EhHHHHh
Confidence 45689999875 678899999999999999999999999999767777777 6666655
No 45
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=3.7e-11 Score=103.45 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=75.6
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC---------cccccccccccceeeCCC
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------ETPVSAVSIRRIPRVPSD 307 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~---------~~~v~dim~~~~~~Vpe~ 307 (513)
++++++.++++. ++++.|.+.+++++||++++ ++++|+++.+|++...... +.++.++|..++.+++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 79 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence 678899999998 99999999999999999864 7899999999998654321 346778877788999999
Q ss_pred CCHHHHHHHHHhCCceEEEEEe
Q 010325 308 MPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 308 ~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+++.++++.|.+.+ .+||+|
T Consensus 80 ~~l~~a~~~~~~~~--~~~Vv~ 99 (116)
T cd04643 80 ADIEEILHLLIDQP--FLPVVD 99 (116)
T ss_pred CCHHHHHHHHhcCC--ceeEEe
Confidence 99999999998865 588998
No 46
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.24 E-value=3.5e-11 Score=102.97 Aligned_cols=91 Identities=15% Similarity=0.247 Sum_probs=79.1
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccccceeeCCCCCHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD 312 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~~~Vpe~~~l~d 312 (513)
++.+++.+.++. ++++.+.+.+++++||++++ ++++|+++.+|+.....+ ...++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 79 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence 566789999999 99999999999999999865 789999999999864322 125678888888999999999999
Q ss_pred HHHHHHhCCceEEEEEe
Q 010325 313 ILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 313 ~L~~m~~~~~~~a~VVD 329 (513)
+++.|++.+.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~Vv~ 96 (114)
T cd04613 80 ALKKFEDSDYEQLPVVD 96 (114)
T ss_pred HHHHHhhCCccEeeEEe
Confidence 99999999999999998
No 47
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.23 E-value=5.5e-11 Score=101.38 Aligned_cols=90 Identities=20% Similarity=0.301 Sum_probs=77.9
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc---ccccccccccceeeCCCCCHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRRIPRVPSDMPLYDI 313 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~---~~v~dim~~~~~~Vpe~~~l~d~ 313 (513)
++..++.+.++. ++++.+.+.+++++||+++ ++++|+++.+|++....... .++.++|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence 566789999998 9999999999999999986 89999999999986543221 15667778889999999999999
Q ss_pred HHHHHhCCceEEEEEe
Q 010325 314 LNEFQKGSSHMAAVVK 329 (513)
Q Consensus 314 L~~m~~~~~~~a~VVD 329 (513)
++.|++++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~V~~ 94 (111)
T cd04612 79 LKRMAERDIGRLPVVD 94 (111)
T ss_pred HHHHHhCCCCeeeEEc
Confidence 9999999999999998
No 48
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=5.4e-11 Score=100.53 Aligned_cols=88 Identities=10% Similarity=0.215 Sum_probs=77.5
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~ 316 (513)
++..++.++++. ++++.+.+++++.+||+++ ++++|+++.+|++... ...++.++|..++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAH--PNRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhccc--ccCCHHHHccCCCEEECCCCCHHHHHHH
Confidence 456788999998 9999999999999999973 7999999999998753 2346788887888999999999999999
Q ss_pred HHhCCceEEEEEe
Q 010325 317 FQKGSSHMAAVVK 329 (513)
Q Consensus 317 m~~~~~~~a~VVD 329 (513)
|.+++...+||+|
T Consensus 77 ~~~~~~~~~~Vv~ 89 (105)
T cd04599 77 MEEKKIERLPVLR 89 (105)
T ss_pred HHHcCCCEeeEEE
Confidence 9999999999999
No 49
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.22 E-value=6e-11 Score=101.27 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=78.0
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC--cccccccccccceeeCCCCCHHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDIL 314 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~--~~~v~dim~~~~~~Vpe~~~l~d~L 314 (513)
+++.++.+.++. ++.+.+.+.+++++||+++ ++++|+++.+|++...... ..++.+++..++.+++++.++.+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence 566788999998 9999999999999999986 7899999999998754322 2467787778889999999999999
Q ss_pred HHHHhCCceEEEEEe
Q 010325 315 NEFQKGSSHMAAVVK 329 (513)
Q Consensus 315 ~~m~~~~~~~a~VVD 329 (513)
+.|.+.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~V~~ 93 (110)
T cd04588 79 RLMNKHNVGRLIVTD 93 (110)
T ss_pred HHHHhcCCCEEEEEC
Confidence 999999999999998
No 50
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=2.8e-11 Score=104.26 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=75.6
Q ss_pred cEEEEeCCCCccHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEhhhhhccCCC--Cccccccccc--ccceeeCCCCCHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSI--RRIPRVPSDMPLY 311 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~-~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--~~~~v~dim~--~~~~~Vpe~~~l~ 311 (513)
++.+++.+.++. ++.+.+.+++ ++++||++++ ++++|+++.+|++..... .+.++.++|. .+++.+.+++++.
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence 566789999998 9999887665 8999999764 789999999999865432 1356777764 2356899999999
Q ss_pred HHHHHHHhCCceEEEEEec
Q 010325 312 DILNEFQKGSSHMAAVVKA 330 (513)
Q Consensus 312 d~L~~m~~~~~~~a~VVDE 330 (513)
++++.|++++.+.+||+|+
T Consensus 80 ~a~~~~~~~~~~~l~Vv~~ 98 (114)
T cd04801 80 EVLKLLEEQGLDELAVVED 98 (114)
T ss_pred HHHHHHHHCCCCeeEEEcC
Confidence 9999999999999999993
No 51
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=5e-11 Score=105.82 Aligned_cols=91 Identities=16% Similarity=0.256 Sum_probs=77.6
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC----c--------------------cc
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----E--------------------TP 292 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~----~--------------------~~ 292 (513)
++.++..+.++. ++++.+.+.+++++||++++ ++++|+++.+|++...... . .+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 456789999998 99999999999999999865 7999999999998543211 1 16
Q ss_pred ccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 293 v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+.++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 116 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD 116 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE
Confidence 7777778889999999999999999999999999999
No 52
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=5e-11 Score=103.68 Aligned_cols=91 Identities=12% Similarity=0.223 Sum_probs=77.8
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-------------CCccccccccccccee
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-------------ETETPVSAVSIRRIPR 303 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~-------------~~~~~v~dim~~~~~~ 303 (513)
++++++.+.++. ++++.+.+.+++.+||++++ ++++|+++.+|++.... ....++.++|.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence 567889999998 99999999999999999754 89999999999985311 0234567777778889
Q ss_pred eCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 304 VPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 304 Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vvd 105 (122)
T cd04635 80 VTPDDSIATAVELMLEHDIGRLPVVN 105 (122)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence 99999999999999999999999999
No 53
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=7.6e-11 Score=99.94 Aligned_cols=88 Identities=15% Similarity=0.302 Sum_probs=77.4
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~ 316 (513)
++++++.+.++. ++++.+.+.+++++||+++ ++++|+++.+||+... ...++.++|..++.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD--PDETVEEIMSKDLVVAVPEMDIMDAARV 77 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC--ccccHHHhCCCCCeEECCCCCHHHHHHH
Confidence 677889999998 9999998888999999975 8999999999998642 2356888887888899999999999999
Q ss_pred HHhCCceEEEEEe
Q 010325 317 FQKGSSHMAAVVK 329 (513)
Q Consensus 317 m~~~~~~~a~VVD 329 (513)
|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~Vv~ 90 (107)
T cd04610 78 MFRTGISKLPVVD 90 (107)
T ss_pred HHHhCCCeEeEEC
Confidence 9999999999999
No 54
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.21 E-value=7.6e-11 Score=100.15 Aligned_cols=90 Identities=17% Similarity=0.273 Sum_probs=78.6
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~ 316 (513)
++..++.+.++. ++++.+.++++.++||++++ ++++|+++.+|++.... ...++.++|...+.++++++++.+++..
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence 566789999998 99999999999999999865 78999999999986432 2356788888888999999999999999
Q ss_pred HHhCCceEEEEEe
Q 010325 317 FQKGSSHMAAVVK 329 (513)
Q Consensus 317 m~~~~~~~a~VVD 329 (513)
|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~vv~ 92 (109)
T cd04583 80 VLKRGPKYVPVVD 92 (109)
T ss_pred HHHcCCceeeEEC
Confidence 9999999999999
No 55
>PRK11573 hypothetical protein; Provisional
Probab=99.21 E-value=9.7e-11 Score=124.68 Aligned_cols=132 Identities=14% Similarity=0.222 Sum_probs=101.2
Q ss_pred ccccccccc--ccceeeCCCCCHHHHHHHHHhCCceEEEEEec-CCCcccCCCCCCCCCccccccCCCCCCCCccccccc
Q 010325 290 ETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA-KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ 366 (513)
Q Consensus 290 ~~~v~dim~--~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE-~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~ 366 (513)
+.+++++|+ .++..++.+.++.++++.+.+++....||.++ .+.++|++ ..+|++...... .+. +.....
T Consensus 186 ~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv--~~kDll~~~~~~---~~~--~~~~l~ 258 (413)
T PRK11573 186 KVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISML--RVREAYRLMTEK---KEF--TKENML 258 (413)
T ss_pred CCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEE--EHHHHHHHhhcc---CcC--CHHHHH
Confidence 456788875 45778999999999999999999999999865 48899999 778877532210 000 111122
Q ss_pred cccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHhcCccCCCCch
Q 010325 367 DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE 438 (513)
Q Consensus 367 ~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~~~ei~de~d~ 438 (513)
+.....++|+..+++.++-+.|+......+..++ |+|+++||||+|||+|+|+| ||.||+|.
T Consensus 259 ~~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD---------EyG~~~GiVTleDilEeivG-ei~de~d~ 320 (413)
T PRK11573 259 RAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---------EYGDIQGLVTVEDILEEIVG-DFTTSMSP 320 (413)
T ss_pred hhccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---------cCCCeEEEeeHHHHHHHHhC-CCCcccCc
Confidence 3345689999999999999888877665544443 89999999999999999998 89999874
No 56
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.21 E-value=8.7e-11 Score=99.86 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=74.4
Q ss_pred EEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHHHHh
Q 010325 240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQK 319 (513)
Q Consensus 240 ~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~ 319 (513)
+++.+.++. ++++.+.+.+++++||+++ ++++|+++.+|++.... .++.++|..++.+++++.++.++++.|.+
T Consensus 5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~~ 78 (104)
T cd04594 5 KVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMMK 78 (104)
T ss_pred EECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHHH
Confidence 578899998 9999999999999999985 89999999999986432 34677777888899999999999999999
Q ss_pred CCceEEEEEe
Q 010325 320 GSSHMAAVVK 329 (513)
Q Consensus 320 ~~~~~a~VVD 329 (513)
++.+.+||+|
T Consensus 79 ~~~~~~~Vv~ 88 (104)
T cd04594 79 NKTRWCPVVD 88 (104)
T ss_pred cCcceEEEEE
Confidence 9999999998
No 57
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=5.6e-11 Score=103.42 Aligned_cols=92 Identities=14% Similarity=0.246 Sum_probs=77.4
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----Ccccccccccc--cceeeCCCCCH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIR--RIPRVPSDMPL 310 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~--~~~~Vpe~~~l 310 (513)
++.+++.++++. ++++.|.+++.+.+||.+++ ++++|+|+.+|++..... ...++.++|.+ +++++++++++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence 456789999998 99999999999999999864 789999999998865321 13456677654 67899999999
Q ss_pred HHHHHHHHhCCceEEEEEec
Q 010325 311 YDILNEFQKGSSHMAAVVKA 330 (513)
Q Consensus 311 ~d~L~~m~~~~~~~a~VVDE 330 (513)
.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~lpVvd~ 99 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVEK 99 (118)
T ss_pred HHHHHHHHHcCCCEeeEEeC
Confidence 99999999999999999993
No 58
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=6.6e-11 Score=104.30 Aligned_cols=91 Identities=19% Similarity=0.310 Sum_probs=73.2
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC----------CCCccccccccccccee--e
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----------PETETPVSAVSIRRIPR--V 304 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~----------~~~~~~v~dim~~~~~~--V 304 (513)
++.++..+.++. ++++.|.++++..+||.+++ ++++|+++.+|+.... .....+++++|.++... +
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~ 79 (126)
T cd04640 2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL 79 (126)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence 356788999998 99999998999999999865 7899999999988421 11235678887554433 3
Q ss_pred ----CCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 305 ----PSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 305 ----pe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
++++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd 108 (126)
T cd04640 80 DLEELENASVGDVVETLKASGRQHALVVD 108 (126)
T ss_pred cHHHhccCcHHHHHHHHHHCCCceEEEEE
Confidence 3789999999999999999999999
No 59
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=8.6e-11 Score=101.04 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=76.9
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---CcccccccccccceeeCCCCCHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDI 313 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---~~~~v~dim~~~~~~Vpe~~~l~d~ 313 (513)
+.++++.+.++. ++++.+.+.++..+||++++ ++++|+++.+|++....+ ...++.++|..++.++++++++.++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04607 3 KQLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEI 80 (113)
T ss_pred cceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHH
Confidence 345688999998 99999999999999999765 789999999998753221 2356888877778899999999999
Q ss_pred HHHHHhCCceEEEEEe
Q 010325 314 LNEFQKGSSHMAAVVK 329 (513)
Q Consensus 314 L~~m~~~~~~~a~VVD 329 (513)
++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~Vv~ 96 (113)
T cd04607 81 LALMRERSIRHLPILD 96 (113)
T ss_pred HHHHHHCCCCEEEEEC
Confidence 9999999999999999
No 60
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.20 E-value=1.1e-10 Score=98.89 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=76.1
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~ 316 (513)
++.+++.+.++. ++++.|.+.+++.+||++++ ++++|+++.+|++.... .++.++|.+.+..+++++++.++++.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence 566788999998 99999999999999999754 89999999999986432 34677776677789999999999999
Q ss_pred HHhCCceEEEEEe
Q 010325 317 FQKGSSHMAAVVK 329 (513)
Q Consensus 317 m~~~~~~~a~VVD 329 (513)
|.+++...+||+|
T Consensus 77 ~~~~~~~~~~Vv~ 89 (106)
T cd04582 77 MFAHDMSWLPCVD 89 (106)
T ss_pred HHHCCCCeeeEEC
Confidence 9999999999999
No 61
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.20 E-value=6.2e-11 Score=127.77 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=88.1
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceee
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRV 304 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~V 304 (513)
..++.++|++ +++++.+++++. ++++.|.+++++.+||+++ ++++|+|+.+|+.... ...+++++|.++++++
T Consensus 87 ~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~--~~~~V~dIMt~~litv 159 (475)
T TIGR01303 87 FVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVD--RFTQVRDIMSTDLVTA 159 (475)
T ss_pred hcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCC--CCCCHHHHccCCceEe
Confidence 4567788885 778999999999 9999999999999999875 6899999999997543 3467999999999999
Q ss_pred CCCCCHHHHHHHHHhCCceEEEEEecCC
Q 010325 305 PSDMPLYDILNEFQKGSSHMAAVVKAKG 332 (513)
Q Consensus 305 pe~~~l~d~L~~m~~~~~~~a~VVDE~G 332 (513)
++++++.++++.|.+++.+.+||+|+.|
T Consensus 160 ~~~~sL~eAl~lM~~~~i~~LPVVD~~g 187 (475)
T TIGR01303 160 PADTEPRKAFDLLEHAPRDVAPLVDADG 187 (475)
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEEcCCC
Confidence 9999999999999999999999999433
No 62
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.20 E-value=9.2e-11 Score=100.42 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=77.5
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccccceeeCCCCCHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD 312 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~~~Vpe~~~l~d 312 (513)
+++.++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|++..... ...++.++|.+++..+++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence 456788999998 9999999999999999986 689999999999864321 235678888788899999999999
Q ss_pred HHHHHHhCCceEEEEEe
Q 010325 313 ILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 313 ~L~~m~~~~~~~a~VVD 329 (513)
+++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~Vv~ 95 (111)
T cd04589 79 ALLLMTRHRIHRVVVRE 95 (111)
T ss_pred HHHHHHHhCccEEEEee
Confidence 99999999999999998
No 63
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.20 E-value=8.7e-11 Score=99.97 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=76.3
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCC-CCCHHHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPS-DMPLYDILN 315 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe-~~~l~d~L~ 315 (513)
++..++.+.++. ++.+.+.+++++++||++++ ++++|+++.+|++... ....++.++|..++.++.. ++++.++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~-~~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFET-DLDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeecc-cCCCCHHHhcccCceEEecCCCCHHHHHH
Confidence 567788999998 99999999999999999865 8999999999997543 2345788887666666666 999999999
Q ss_pred HHHhCCceEEEEEe
Q 010325 316 EFQKGSSHMAAVVK 329 (513)
Q Consensus 316 ~m~~~~~~~a~VVD 329 (513)
.|++++.+.+||+|
T Consensus 80 ~~~~~~~~~~~Vv~ 93 (110)
T cd04601 80 LLHEHKIEKLPVVD 93 (110)
T ss_pred HHHHhCCCeeeEEc
Confidence 99999999999999
No 64
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.19 E-value=9.8e-11 Score=101.23 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=77.5
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--------------Ccccccccccccce
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TETPVSAVSIRRIP 302 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--------------~~~~v~dim~~~~~ 302 (513)
++.+++.+.++. ++++.+.+.+++.+||+++ ++++|+++.+|++..... ...++.++|.+++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence 456789999999 9999999999999999986 899999999999865321 12456777778889
Q ss_pred eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 303 RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
++++++++.+++..|++++.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04585 79 TVSPDASVEEAAELMLERKISGLPVVD 105 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCceeEEC
Confidence 999999999999999999999999998
No 65
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=9e-11 Score=103.37 Aligned_cols=91 Identities=14% Similarity=0.276 Sum_probs=76.9
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-----------------Ccccccccccc
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----------------TETPVSAVSIR 299 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-----------------~~~~v~dim~~ 299 (513)
++..++.+.++. ++++.|.+.+++.+||++++ ++++|+++.+|+...... .+.++.++|.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 566788999998 99999999999999999865 789999999998743210 12457788878
Q ss_pred cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+++++++++++.++++.|.+++.+.+||++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~ 109 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVT 109 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence 889999999999999999999989888885
No 66
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.19 E-value=1.3e-10 Score=98.08 Aligned_cols=78 Identities=8% Similarity=0.175 Sum_probs=69.9
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~ 316 (513)
++.+++.+.++. ++++.|.+.+++.+||++++ ++++|+++.+|+.... .+.++++++++.++++.
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~-------------~~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS-------------EVVTATKRTTVSECAQK 66 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC-------------CcEEecCCCCHHHHHHH
Confidence 567889999998 99999999999999999864 7999999999998532 16789999999999999
Q ss_pred HHhCCceEEEEEe
Q 010325 317 FQKGSSHMAAVVK 329 (513)
Q Consensus 317 m~~~~~~~a~VVD 329 (513)
|.+++.+.+||+|
T Consensus 67 m~~~~~~~lpVv~ 79 (96)
T cd04614 67 MKRNRIEQIPIIN 79 (96)
T ss_pred HHHhCCCeeeEEC
Confidence 9999999999999
No 67
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.19 E-value=9.8e-11 Score=127.11 Aligned_cols=128 Identities=13% Similarity=0.207 Sum_probs=107.6
Q ss_pred hHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCCC
Q 010325 212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPET 289 (513)
Q Consensus 212 ~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~--~d~ivGiV~~kDLl~~~~~~ 289 (513)
++.+.++++.++++ .|++ +++++++++++. ++++.+.+++++.+||++++ .++++|+|+.+|+.... ..
T Consensus 87 ~~~~~v~kvk~~e~-----g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~ 157 (495)
T PTZ00314 87 EQVEEVRKVKRFEN-----GFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-DK 157 (495)
T ss_pred HHHHHHhhcccccc-----cccc--CCeecCCCCCHH-HHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-cC
Confidence 45667777765554 6654 778899999999 99999999999999999863 36899999999997543 33
Q ss_pred cccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccccc
Q 010325 290 ETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE 350 (513)
Q Consensus 290 ~~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~ 350 (513)
+.+++++|.+ +++++++++++.++++.|++++.+.+||+|+.|.+.|++ |.+|+++...
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGII--T~~DIl~~~~ 218 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALV--SRSDLKKNRG 218 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEE--EehHhhhccc
Confidence 5678999876 788999999999999999999999999999999999999 8888877643
No 68
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.19 E-value=1.1e-10 Score=99.81 Aligned_cols=90 Identities=19% Similarity=0.263 Sum_probs=77.7
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC----CCcccccccccccceeeCCCCCHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ETETPVSAVSIRRIPRVPSDMPLYD 312 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~----~~~~~v~dim~~~~~~Vpe~~~l~d 312 (513)
++.+++.+.++. ++.+.+.+.+++++||+++ ++++|+++.+|++.... ....++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence 567789999998 9999999999999999986 89999999999875211 1235677888888999999999999
Q ss_pred HHHHHHhCCceEEEEEe
Q 010325 313 ILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 313 ~L~~m~~~~~~~a~VVD 329 (513)
+++.|++++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~Vv~ 95 (111)
T cd04800 79 ALLLMLERGIHHLPVVD 95 (111)
T ss_pred HHHHHHHcCCCeeeEeE
Confidence 99999999999999998
No 69
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.18 E-value=1.1e-10 Score=99.72 Aligned_cols=90 Identities=20% Similarity=0.354 Sum_probs=78.5
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--CcccccccccccceeeCCCCCHHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDIL 314 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--~~~~v~dim~~~~~~Vpe~~~l~d~L 314 (513)
++.+++.+.++. ++.+.+.+.+++++||+++ ++++|+++.+|++..... ...++.++|.+++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 567889999998 9999999999999999986 799999999998754321 23568888888899999999999999
Q ss_pred HHHHhCCceEEEEEe
Q 010325 315 NEFQKGSSHMAAVVK 329 (513)
Q Consensus 315 ~~m~~~~~~~a~VVD 329 (513)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~V~~ 94 (110)
T cd04595 80 ELMVEHDIGRVPVVE 94 (110)
T ss_pred HHHHHcCCCeeEEEe
Confidence 999999999999998
No 70
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.18 E-value=9e-11 Score=100.52 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=77.3
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccccceeeCCCCCHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD 312 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~~~Vpe~~~l~d 312 (513)
++.+++.+.++. ++++.+.+.+++++||++++ ++++|+++.++++..... ...++.++|..++.++++++++.+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 556688999998 99999998899999999865 799999998888754322 124688888788889999999999
Q ss_pred HHHHHHhCCceEEEEEe
Q 010325 313 ILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 313 ~L~~m~~~~~~~a~VVD 329 (513)
+++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~Vv~ 97 (114)
T cd04604 81 ALELMEENKITALPVVD 97 (114)
T ss_pred HHHHHHHcCCCEEEEEC
Confidence 99999999999999998
No 71
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.18 E-value=3.5e-10 Score=121.18 Aligned_cols=130 Identities=17% Similarity=0.110 Sum_probs=104.1
Q ss_pred ccccccccc--ccceeeCCCCCHHHHHHHHHhCCceEEEEEe-cCCCcccCCCCCCCCCccccccCCCCCCCCccccccc
Q 010325 290 ETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK-AKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ 366 (513)
Q Consensus 290 ~~~v~dim~--~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD-E~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~ 366 (513)
+.+++++|+ .++..++.+.+..++.+.+.+.+....||.| .-+.++|++ +.+|++........ .. ...
T Consensus 205 ~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv--~~Kdll~~~~~~~~-~~------~~~ 275 (429)
T COG1253 205 DRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIV--HVKDLLRALLDGQS-DL------DLR 275 (429)
T ss_pred CcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEE--EHHHHHHHHhcCcc-cc------chh
Confidence 456778875 4567899999999999999999999999999 788999999 88999888765432 11 011
Q ss_pred cccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHhcCccCCCCch
Q 010325 367 DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE 438 (513)
Q Consensus 367 ~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~~~ei~de~d~ 438 (513)
..-...++|+..+++.++-+.|+......+..++ |+|.+.|+||+|||+|+++| ||.||+|+
T Consensus 276 ~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD---------EyG~~~GlVTleDIiEeIvG-ei~de~d~ 337 (429)
T COG1253 276 VLVRPPLFVPETLSLSDLLEEFREERTHMAIVVD---------EYGGVEGLVTLEDIIEEIVG-EIPDEHDE 337 (429)
T ss_pred hcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE---------cCCCeEEEeEHHHHHHHHhC-CCcCcccc
Confidence 1122789999999999998888876555544443 89999999999999999998 99999986
No 72
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=1.3e-10 Score=99.67 Aligned_cols=90 Identities=13% Similarity=0.231 Sum_probs=76.9
Q ss_pred EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccccceeeCCCCCHHHH
Q 010325 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYDI 313 (513)
Q Consensus 238 vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~~~Vpe~~~l~d~ 313 (513)
...++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++....+ ...++.++|..++.++++++++.++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA 80 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence 45678999998 99999999999999999864 789999999999863211 2356788877888999999999999
Q ss_pred HHHHHhCCceEEEEEe
Q 010325 314 LNEFQKGSSHMAAVVK 329 (513)
Q Consensus 314 L~~m~~~~~~~a~VVD 329 (513)
++.|.+.+.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~Vvd 96 (113)
T cd04615 81 RWLMSNNNISRLPVLD 96 (113)
T ss_pred HHHHHHcCCCeeeEEC
Confidence 9999999999999998
No 73
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=1.1e-10 Score=99.92 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=72.1
Q ss_pred EeCCCCccHHHHHHHHhcCC-----ceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHH
Q 010325 241 LDVNSKLDWEAMGKILARGH-----SRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN 315 (513)
Q Consensus 241 v~~d~sl~~eal~~i~~~~~-----sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~ 315 (513)
+.++.++. ++++.+.++++ ..+||++++ ++++|+++.+|++... .+.++.+++..++..+++++++.++++
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~ 77 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence 46778888 99999988774 678999754 7899999999998642 345688887777889999999999999
Q ss_pred HHHhCCceEEEEEe
Q 010325 316 EFQKGSSHMAAVVK 329 (513)
Q Consensus 316 ~m~~~~~~~a~VVD 329 (513)
.|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~~Vv~ 91 (109)
T cd04606 78 LFEKYDLLALPVVD 91 (109)
T ss_pred HHHHcCCceeeeEC
Confidence 99999999999998
No 74
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=1.9e-10 Score=97.67 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=77.4
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~ 316 (513)
++++++.+.++. ++++.+.+.+++++||++++ ++++|+++.++++.... ..++.++|..++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL 77 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence 577889999998 99999999999999999866 88999999999985422 245677777788899999999999999
Q ss_pred HHhCCceEEEEEe
Q 010325 317 FQKGSSHMAAVVK 329 (513)
Q Consensus 317 m~~~~~~~a~VVD 329 (513)
|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~Vvd 90 (106)
T cd04638 78 MVENNIRRVPVVD 90 (106)
T ss_pred HHHcCCCEEEEEE
Confidence 9999999999998
No 75
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.17 E-value=1.2e-10 Score=100.57 Aligned_cols=91 Identities=16% Similarity=0.249 Sum_probs=75.9
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCCCcccccccccccceeeCC--CCCHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPS--DMPLYD 312 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~--~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe--~~~l~d 312 (513)
++.+++.++++. ++++.+.+.+++++||+++. .++++|+++.+|++.... ...+++++|..+...+.. ++++.+
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~ 80 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence 566788999998 99999998999999999852 379999999999975432 235588887766666655 999999
Q ss_pred HHHHHHhCCceEEEEEe
Q 010325 313 ILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 313 ~L~~m~~~~~~~a~VVD 329 (513)
+++.|++++.+.+||+|
T Consensus 81 ~l~~~~~~~~~~~pVv~ 97 (114)
T cd04602 81 ANEILRESKKGKLPIVN 97 (114)
T ss_pred HHHHHHhcCCCceeEEC
Confidence 99999999999999999
No 76
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=9.1e-11 Score=100.65 Aligned_cols=91 Identities=21% Similarity=0.267 Sum_probs=77.6
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC------CCcccccccccccceeeCCCCCH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP------ETETPVSAVSIRRIPRVPSDMPL 310 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~------~~~~~v~dim~~~~~~Vpe~~~l 310 (513)
++..++.+.++. ++.+.+.+.+++++||++++ ++++|+++.+|++.... ....++.++|..++.++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 79 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI 79 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence 456788999998 99999998899999999864 78999999999985321 12356788877788899999999
Q ss_pred HHHHHHHHhCCceEEEEEe
Q 010325 311 YDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 311 ~d~L~~m~~~~~~~a~VVD 329 (513)
.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~~~Vv~ 98 (114)
T cd04629 80 VDLAQLMLKAKPKRYPVVD 98 (114)
T ss_pred HHHHHHHHHhCCCccCEEE
Confidence 9999999999999999998
No 77
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.16 E-value=1e-10 Score=104.15 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=78.0
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC--------------------------CCc
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP--------------------------ETE 290 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~--------------------------~~~ 290 (513)
++.+++.+.++. ++++.|.++++.++||++++ ++++|+++.+|++.... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 667889999998 99999999999999999754 88999999999875321 123
Q ss_pred ccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 291 ~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
.++.++|..++..+++++++.++++.|.+++.+.+||+|
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd 119 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR 119 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec
Confidence 457787777888999999999999999999999999998
No 78
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.16 E-value=5.9e-11 Score=104.89 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=69.7
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC----CCCcccccccccccceeeCCCCCHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVSIRRIPRVPSDMPLYD 312 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~----~~~~~~v~dim~~~~~~Vpe~~~l~d 312 (513)
++++++++.++. ++++.|.+++++.+||++++ ++++|+++.+|++... ...+.+++++|.+++.++.+++++.+
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence 677899999998 99999999999999999865 7899999999998521 12357899999999999999999999
Q ss_pred HHHHHHh
Q 010325 313 ILNEFQK 319 (513)
Q Consensus 313 ~L~~m~~ 319 (513)
+.+.|..
T Consensus 81 v~~~~~~ 87 (124)
T cd04608 81 LSRILET 87 (124)
T ss_pred HHhhccc
Confidence 9997654
No 79
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.16 E-value=1.1e-10 Score=125.83 Aligned_cols=104 Identities=18% Similarity=0.318 Sum_probs=86.3
Q ss_pred HHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----Cccc
Q 010325 217 ISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETP 292 (513)
Q Consensus 217 I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~ 292 (513)
..++ ++..+|+++|.+ ++.++.+++++. ++++.|.+++++.+||++++ ++++|+|+.+|++..... .+.+
T Consensus 328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~ 401 (454)
T TIGR01137 328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDA 401 (454)
T ss_pred HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCC
Confidence 4444 788999999986 788999999998 99999999999999999865 789999999999863321 2346
Q ss_pred ccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 293 v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+.++|.+++++|++++++.++++.|.+++ . +||+
T Consensus 402 v~~im~~~~~~v~~~~~l~~a~~~~~~~~--~-~vV~ 435 (454)
T TIGR01137 402 VSKVMSKKFIQIGEGEKLSDLSKFLEKNS--S-AIVT 435 (454)
T ss_pred HHHhcCCCCeEECCcCcHHHHHHHHHHCC--e-eEEE
Confidence 88888888889999999999999998864 3 4455
No 80
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.16 E-value=1.4e-10 Score=99.37 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=76.4
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC----CC-cccccccccccceeeCCCCCHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ET-ETPVSAVSIRRIPRVPSDMPLY 311 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~----~~-~~~v~dim~~~~~~Vpe~~~l~ 311 (513)
++..+..+.+++ ++++.+.+++++++||.++ ++++|+++.+|++.... .. ..++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~ 78 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL 78 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence 566788999998 9999999999999999985 89999999999874211 11 1567788878888999999999
Q ss_pred HHHHHHHhCCceEEEEEe
Q 010325 312 DILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 312 d~L~~m~~~~~~~a~VVD 329 (513)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~l~Vv~ 96 (113)
T cd04587 79 EALHLMVQGKFRHLPVVD 96 (113)
T ss_pred HHHHHHHHcCCCcccEEC
Confidence 999999999999999998
No 81
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=1e-10 Score=101.79 Aligned_cols=90 Identities=13% Similarity=0.209 Sum_probs=77.3
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--------------Ccccccccccccce
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TETPVSAVSIRRIP 302 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--------------~~~~v~dim~~~~~ 302 (513)
++..++.+.++. ++.+.+.+.+++++||+++ ++++|+++.+|+...... ...++.++|.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 567789999998 9999999999999999985 799999999999753211 12357777778889
Q ss_pred eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 303 RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
++++++++.++++.|.+++.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~ 105 (122)
T cd04637 79 TVSPDTPVDEASKLLLENSISCLPVVD 105 (122)
T ss_pred eeCCCCcHHHHHHHHHHcCCCeEeEEC
Confidence 999999999999999999999999998
No 82
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.15 E-value=1.6e-10 Score=99.47 Aligned_cols=90 Identities=12% Similarity=0.307 Sum_probs=73.9
Q ss_pred cEEEEeCCCCccHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccccceeeCCC--CC
Q 010325 237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSD--MP 309 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~-~sr~PV~~~~~d~ivGiV~~kDLl~~~~~----~~~~v~dim~~~~~~Vpe~--~~ 309 (513)
++..++.+.++. ++++.+.+++ +..+||.++ ++++|+++.+|++....+ ...++.++|.+++++++++ ++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 78 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD 78 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence 455688999998 9999998888 667777763 789999999999864322 1256778877788889887 78
Q ss_pred HHHHHHHHHhCCceEEEEEe
Q 010325 310 LYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 310 l~d~L~~m~~~~~~~a~VVD 329 (513)
+.++++.|.+++.+.+||+|
T Consensus 79 l~~a~~~~~~~~~~~~pVvd 98 (115)
T cd04620 79 IFTALSLFRQHQIRHLPVLD 98 (115)
T ss_pred HHHHHHHHHHhCCceEEEEc
Confidence 99999999999999999999
No 83
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.15 E-value=2.5e-10 Score=97.77 Aligned_cols=90 Identities=14% Similarity=0.238 Sum_probs=76.6
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc-CC---C-CcccccccccccceeeCCCCCHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV-RP---E-TETPVSAVSIRRIPRVPSDMPLY 311 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~-~~---~-~~~~v~dim~~~~~~Vpe~~~l~ 311 (513)
++.+++.+.++. ++.+.+.+.+++.+||+++ ++++|+++.+|++.. .. . ...++.++|...+.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD 78 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence 567789999998 9999999999999999986 899999999998632 11 1 11247888878888999999999
Q ss_pred HHHHHHHhCCceEEEEEe
Q 010325 312 DILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 312 d~L~~m~~~~~~~a~VVD 329 (513)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~~V~~ 96 (113)
T cd04622 79 EAARLMREHQVRRLPVVD 96 (113)
T ss_pred HHHHHHHHcCCCeeeEEC
Confidence 999999999999999998
No 84
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.14 E-value=1.8e-10 Score=98.76 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=74.7
Q ss_pred ccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHH
Q 010325 236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDI 313 (513)
Q Consensus 236 ~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~--~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~ 313 (513)
.+...++++.+++ ++.+.+.+.+++++||+++. .++++|+|+.+|+...... +|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~ 73 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence 3677889999998 99999999999999999862 3789999999999865321 567788899999999999
Q ss_pred HHHHHhCCceEEEEEe
Q 010325 314 LNEFQKGSSHMAAVVK 329 (513)
Q Consensus 314 L~~m~~~~~~~a~VVD 329 (513)
++.|++++.+.+||++
T Consensus 74 ~~~~~~~~~~~~pVv~ 89 (105)
T cd04591 74 HQLFRKLGLRHLLVVD 89 (105)
T ss_pred HHHHHHcCCCEEEEEE
Confidence 9999999999999986
No 85
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.12 E-value=3.5e-10 Score=96.79 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=77.1
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-----CCcccccccccccceeeCCCCCHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLY 311 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~-----~~~~~v~dim~~~~~~Vpe~~~l~ 311 (513)
+++.++.+.++. ++++.+.+++++.+||+++ ++++|+++.+|++.... ....++.++|.++++++++++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence 456788999998 9999999999999999986 48999999999986321 123467788777888999999999
Q ss_pred HHHHHHHhCCceEEEEEe
Q 010325 312 DILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 312 d~L~~m~~~~~~~a~VVD 329 (513)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~~Vv~ 96 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVD 96 (112)
T ss_pred HHHHHHHHcCCCeeEEee
Confidence 999999999999999998
No 86
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.10 E-value=3.8e-10 Score=97.78 Aligned_cols=91 Identities=13% Similarity=0.205 Sum_probs=77.8
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-------------CCccccccccccccee
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-------------ETETPVSAVSIRRIPR 303 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~-------------~~~~~v~dim~~~~~~ 303 (513)
++.+++.+.++. ++++.+.+.+++++||++++ ++++|+++.+|+..... ....++.++|..++.+
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT 79 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence 456788999998 99999999999999999875 89999999999875321 1124577877788889
Q ss_pred eCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 304 VPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 304 Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 i~~~~~l~~~~~~~~~~~~~~~~V~~ 105 (121)
T cd04584 80 VHPLDTVEEAALLMREHRIGCLPVVE 105 (121)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999998
No 87
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.10 E-value=3.9e-10 Score=95.78 Aligned_cols=88 Identities=23% Similarity=0.366 Sum_probs=72.8
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC----cccccccccccceeeCCCCCHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYD 312 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~----~~~v~dim~~~~~~Vpe~~~l~d 312 (513)
++.+++.++++. ++.+.+.+++++++||+++ ++++|+++.+|+.....+. ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 78 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE 78 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence 456788999998 9999999999999999985 7999999999998753221 24677777778889999999999
Q ss_pred HHHHHHhCCceEEEEEe
Q 010325 313 ILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 313 ~L~~m~~~~~~~a~VVD 329 (513)
+++.|++ ..+ +||+|
T Consensus 79 ~~~~~~~-~~~-~~vv~ 93 (110)
T cd04609 79 LSELLDR-GNV-AVVVD 93 (110)
T ss_pred HHHHHHh-CCc-eeEEe
Confidence 9999988 333 68888
No 88
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.09 E-value=5e-10 Score=95.83 Aligned_cols=90 Identities=14% Similarity=0.224 Sum_probs=75.6
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-----CcccccccccccceeeCCCCCHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIRRIPRVPSDMPLY 311 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-----~~~~v~dim~~~~~~Vpe~~~l~ 311 (513)
++..++.++++. ++++.+.+++++.++|.++ ++++|+++.+|++....+ ...++.++|..++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID 78 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence 567889999998 9999998888888877653 799999999999854321 23568888777788999999999
Q ss_pred HHHHHHHhCCceEEEEEe
Q 010325 312 DILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 312 d~L~~m~~~~~~~a~VVD 329 (513)
++++.|.+++...+||+|
T Consensus 79 ~a~~~m~~~~~~~l~Vv~ 96 (112)
T cd04625 79 EVRRLMVERHLRYLPVLD 96 (112)
T ss_pred HHHHHHHHcCCCeeeEEE
Confidence 999999999999999998
No 89
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.08 E-value=4.9e-10 Score=97.27 Aligned_cols=90 Identities=19% Similarity=0.326 Sum_probs=77.2
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--------------Ccccccccccccce
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TETPVSAVSIRRIP 302 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--------------~~~~v~dim~~~~~ 302 (513)
+++.++.+.++. ++.+.+.+.+++++||+++ ++++|+++.+|++..... ...++.++|..++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence 456788999998 9999999999999999985 899999999999864221 12467777778889
Q ss_pred eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 303 RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
++++++++.++++.|.+++.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 105 (121)
T cd04633 79 TIEPDTSVSDVASLMLENNIGGLPVVD 105 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCcccEEE
Confidence 999999999999999999999999999
No 90
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.06 E-value=8.9e-10 Score=92.71 Aligned_cols=91 Identities=21% Similarity=0.319 Sum_probs=76.8
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc----ccccccccccceeeCCCCCHHH
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE----TPVSAVSIRRIPRVPSDMPLYD 312 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~----~~v~dim~~~~~~Vpe~~~l~d 312 (513)
++..++.+.++. ++++.+.+.+++++||++++ ++++|+++.+|++....... ..+.++|..+..++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence 456788999998 99999999999999999865 79999999999986543211 1145667788889999999999
Q ss_pred HHHHHHhCCceEEEEEe
Q 010325 313 ILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 313 ~L~~m~~~~~~~a~VVD 329 (513)
+++.|.+.+.+.++|+|
T Consensus 80 ~~~~~~~~~~~~~~V~~ 96 (113)
T cd02205 80 AAELMLEHGIRRLPVVD 96 (113)
T ss_pred HHHHHHHcCCCEEEEEc
Confidence 99999999999999999
No 91
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=6.5e-10 Score=100.51 Aligned_cols=90 Identities=13% Similarity=0.262 Sum_probs=76.9
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----------------------------
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------------------------- 288 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---------------------------- 288 (513)
++++++.+.++. ++.+.|.+.+++.+||+++ ++++|+++.+|++.....
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 567889999998 9999999999999999985 799999999998753211
Q ss_pred --------CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 289 --------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 289 --------~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
...++.++|.++++++++++++.++++.|++.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~ 127 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE 127 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 12346677778889999999999999999999999999998
No 92
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.05 E-value=4.1e-10 Score=112.76 Aligned_cols=110 Identities=12% Similarity=0.098 Sum_probs=96.6
Q ss_pred cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC---CCcccccccccccce
Q 010325 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP---ETETPVSAVSIRRIP 302 (513)
Q Consensus 226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~---~~~~~v~dim~~~~~ 302 (513)
.+|+++|.+. ++..+++++++. ++++.+.+.+++.+||++++ ++++|+++.+|++.... ..+.+++++|.++++
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 6899999862 278899999998 99999999999999999865 78999999999986432 124678899888889
Q ss_pred eeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCC
Q 010325 303 RVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (513)
Q Consensus 303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv 338 (513)
++++++++.++++.|.+++.+.+||+|+.|.+.|++
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI 267 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEE
Confidence 999999999999999999999999999999999987
No 93
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.03 E-value=9.9e-10 Score=95.04 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=73.4
Q ss_pred cEEEEeCCCCccHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEhhhhhccCCC-------CcccccccccccceeeCCCC
Q 010325 237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPE-------TETPVSAVSIRRIPRVPSDM 308 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~-~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-------~~~~v~dim~~~~~~Vpe~~ 308 (513)
++.+++.++++. ++++.+.+.+ ++.+||+++ ++++|+++.+|++..... .+.++.++|..++.++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 78 (119)
T cd04598 2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT 78 (119)
T ss_pred CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence 445678999998 9999998887 899999986 899999999999754221 23568888878888999999
Q ss_pred CHHHHHHHHHhCCce---EEEEEe
Q 010325 309 PLYDILNEFQKGSSH---MAAVVK 329 (513)
Q Consensus 309 ~l~d~L~~m~~~~~~---~a~VVD 329 (513)
++.++++.|.+++.. ..+|+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vv~ 102 (119)
T cd04598 79 PLEEVSRLATGRDSQNLYDGFIVT 102 (119)
T ss_pred CHHHHHHHHHcCCcccccccEEEe
Confidence 999999999988752 346787
No 94
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.00 E-value=2.1e-09 Score=92.46 Aligned_cols=95 Identities=21% Similarity=0.354 Sum_probs=82.6
Q ss_pred cccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc-c--cccccccccceeeCC
Q 010325 230 EAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-T--PVSAVSIRRIPRVPS 306 (513)
Q Consensus 230 dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~-~--~v~dim~~~~~~Vpe 306 (513)
++|. .+++++.++.++. ++...|.+++++++||.++ ++++|+++.+|++.+..... . ++.++|.+++.++.+
T Consensus 3 ~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~ 77 (117)
T COG0517 3 DIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDP 77 (117)
T ss_pred cccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECC
Confidence 4555 4888999999998 9999999999999999975 37999999999998754332 2 478888888999999
Q ss_pred CCCHHHHHHHHHh-CCceEEEEEe
Q 010325 307 DMPLYDILNEFQK-GSSHMAAVVK 329 (513)
Q Consensus 307 ~~~l~d~L~~m~~-~~~~~a~VVD 329 (513)
+.++.++++.|.+ ++.+.+||+|
T Consensus 78 ~~~~~~~~~~m~~~~~~~~lpVv~ 101 (117)
T COG0517 78 DTPLEEALELMVERHKIRRLPVVD 101 (117)
T ss_pred CCCHHHHHHHHHHHcCcCeEEEEE
Confidence 9999999999999 7999999999
No 95
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.90 E-value=7.3e-10 Score=112.80 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=99.4
Q ss_pred Ccccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEEEecC-CCcccCCCCCCCCCccccccCCCCCCCCcccccc
Q 010325 289 TETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSK 365 (513)
Q Consensus 289 ~~~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~-G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~ 365 (513)
.+..++++|.. ++.++++++++.++++.+.+++....||+++. +.++|++ +.+|++...... ... ...
T Consensus 65 ~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv--~~kDll~~~~~~--~~~-----~~l 135 (292)
T PRK15094 65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGIL--MAKDLLPFMRSD--AEA-----FSM 135 (292)
T ss_pred CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEE--EHHHHHhHhhcc--CCc-----CCH
Confidence 34678899865 58899999999999999999999999999875 7899999 888887533110 000 112
Q ss_pred ccccCCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecchHHHHHHHhcCccCCCCch
Q 010325 366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE 438 (513)
Q Consensus 366 ~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~eel~~~ei~de~d~ 438 (513)
.......++++.++++.++.+.|+.........+ . |+|+++||||++||+|+|+| ||.||+|.
T Consensus 136 ~~l~r~~~~V~e~~~l~~~L~~m~~~~~~~a~Vv-----D----e~G~viGiVTleDIle~ivG-ei~de~d~ 198 (292)
T PRK15094 136 DKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIVI-----D----EFGGVSGLVTIEDILELIVG-EIEDEYDE 198 (292)
T ss_pred HHHcCCCcCcCCCCcHHHHHHHHHhcCCEEEEEE-----e----CCCCEEEEeEHHHHHHHHhC-CCcccccc
Confidence 2334467789999999888887775543332222 2 67899999999999999997 99999884
No 96
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.82 E-value=1.2e-08 Score=91.80 Aligned_cols=94 Identities=19% Similarity=0.159 Sum_probs=77.2
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcc---c------------ccccc----
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET---P------------VSAVS---- 297 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~---~------------v~dim---- 297 (513)
++..+++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++........ . +.++|
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 678899999999 99999999999999999865 789999999999865422111 1 22344
Q ss_pred -----cccceeeCCCCCHHHHHHHHHhCCceEEEEEecCC
Q 010325 298 -----IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKG 332 (513)
Q Consensus 298 -----~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G 332 (513)
.++++++++++++.++++.|.+++.+.+||+|+.+
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 35688999999999999999999999999999644
No 97
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.80 E-value=7.7e-09 Score=110.18 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=88.9
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC----CCCcccccccccc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVSIR 299 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~----~~~~~~v~dim~~ 299 (513)
--.+++++|+. ..+++++..++. ++.++|.+.|.|.+.+++++ +...|||+.+|+.... .....+|+++|..
T Consensus 147 ~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~ 222 (610)
T COG2905 147 ILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTS 222 (610)
T ss_pred HHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhcc
Confidence 33457888885 778899999998 99999999999988888876 8899999999998642 2234789999999
Q ss_pred cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
|+++|..++-+.+|+-.|.++++|.+||.+
T Consensus 223 p~~svd~~~~~feAml~m~r~~I~hl~V~e 252 (610)
T COG2905 223 PVISVDRGDFLFEAMLMMLRNRIKHLPVTE 252 (610)
T ss_pred CceeecCcchHHHHHHHHHHhCCceeeeec
Confidence 999999999999999999999999999985
No 98
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.71 E-value=3.3e-08 Score=109.23 Aligned_cols=118 Identities=16% Similarity=0.179 Sum_probs=97.8
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----------------
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------------- 288 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~---------------- 288 (513)
..+|+++|++ ++.++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+.....+
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 4689999986 888999999999 99999999999999999865 799999999998741000
Q ss_pred --------------------------------------------------------------------------------
Q 010325 289 -------------------------------------------------------------------------------- 288 (513)
Q Consensus 289 -------------------------------------------------------------------------------- 288 (513)
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence
Q ss_pred ---------------------Cccccccccc-ccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCc
Q 010325 289 ---------------------TETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP 346 (513)
Q Consensus 289 ---------------------~~~~v~dim~-~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dil 346 (513)
...+++++|. ++++++++++++.++.+.|.+++.+.+||+|+.|.++|++ |..|++
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGii--t~~dl~ 300 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVI--SRYHLL 300 (546)
T ss_pred hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEE--EHHHhh
Confidence 0124566676 6788999999999999999999999999999888888888 666665
Q ss_pred cc
Q 010325 347 KL 348 (513)
Q Consensus 347 e~ 348 (513)
+.
T Consensus 301 ~~ 302 (546)
T PRK14869 301 SP 302 (546)
T ss_pred cc
Confidence 53
No 99
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.53 E-value=1.2e-07 Score=71.82 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=34.5
Q ss_pred ccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 293 v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
|+++|.++++++++++++.++++.|++++.+.+||+|
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d 37 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD 37 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe
Confidence 3577888999999999999999999999999999999
No 100
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.52 E-value=2.7e-08 Score=95.68 Aligned_cols=163 Identities=17% Similarity=0.207 Sum_probs=117.8
Q ss_pred HHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccc--cceeeCCCCCHHHHHHHHHhCCceEEEE
Q 010325 250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAV 327 (513)
Q Consensus 250 eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~--~~~~Vpe~~~l~d~L~~m~~~~~~~a~V 327 (513)
|.+..++...+..+-= .+..+.+-|++...|+ .|+|+|+. ...+++.+.++.+.+..+.+..-...||
T Consensus 36 eLl~liRdse~n~LiD-~dt~~mlEGvm~iadl---------~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPV 105 (293)
T COG4535 36 ELLELIRDSEQNELID-ADTLDMLEGVMDIADL---------RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPV 105 (293)
T ss_pred HHHHHHHHhhhccccC-hhHHHHHHHHHHHHHh---------hHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCc
Confidence 6777777655443321 1233445566555544 46778763 4578999999999999999987777888
Q ss_pred Eec-CCCcccCCCCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCccccccccccccCCCCccccccccc
Q 010325 328 VKA-KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYAS 406 (513)
Q Consensus 328 VDE-~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~ 406 (513)
+.| ...+.||+ ..+|++......... -.++..-..-++|+.++.+.-+.|.+..+...++..+.
T Consensus 106 i~edkD~v~GIL--~AKDLL~~~~~~~~~-------F~i~~lLRPav~VPESKrvd~lLkeFR~~RnHMAIViD------ 170 (293)
T COG4535 106 ISEDKDHVEGIL--LAKDLLPFMRSDAEP-------FDIKELLRPAVVVPESKRVDRLLKEFRSQRNHMAIVID------ 170 (293)
T ss_pred ccCCchhhhhhh--hHHHHHHHhcCCccc-------ccHHHhcccceecccchhHHHHHHHHHhhcCceEEEEe------
Confidence 854 78899999 788888764422111 12334455668999999998888888876665555554
Q ss_pred cccCCCccceecchHHHHHHHhcCccCCCCchhhh
Q 010325 407 EDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVD 441 (513)
Q Consensus 407 ~~~e~g~liGIITleDv~eel~~~ei~de~d~~~~ 441 (513)
|+|.+-|+||.|||+|.++| ||.||+|+..+
T Consensus 171 ---EfGgVsGLVTIEDiLEqIVG-dIEDE~Deee~ 201 (293)
T COG4535 171 ---EFGGVSGLVTIEDILEQIVG-DIEDEYDEEED 201 (293)
T ss_pred ---ccCCeeeeEEHHHHHHHHhc-ccccccchhhh
Confidence 89999999999999999997 99999997653
No 101
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.44 E-value=2.5e-07 Score=70.06 Aligned_cols=54 Identities=26% Similarity=0.508 Sum_probs=50.1
Q ss_pred cccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325 228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (513)
Q Consensus 228 V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~ 285 (513)
|+++|++ +++++++++++. ++++.|.+++++++||++++ ++++|+++.+||+.+
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~ 54 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKA 54 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhh
Confidence 5789997 899999999998 99999999999999999876 899999999999864
No 102
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.26 E-value=3.5e-06 Score=88.88 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=74.6
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc-----cc-cccc------ccccceee
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-----TP-VSAV------SIRRIPRV 304 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~-----~~-v~di------m~~~~~~V 304 (513)
++..++.++++. ++++.|.+.+++.+||++.+ ++.+|+++..|+.....+.. .. ++.. ...+++++
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 588999999998 99999999999999999976 66699999999986433221 11 2221 12346789
Q ss_pred CCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 305 PSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 305 pe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
.++.++.+++..|..++.|.+.|||
T Consensus 316 ~~~ssL~~vi~~lv~~~vHRl~VVd 340 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVHRLWVVD 340 (381)
T ss_pred eecchHHHHHHHHHhcCceEEEEEc
Confidence 9999999999999999999999999
No 103
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.21 E-value=2.8e-06 Score=87.61 Aligned_cols=150 Identities=11% Similarity=0.126 Sum_probs=112.9
Q ss_pred ccccHHHHHHHHHHhhhhhccCC-CCChhHHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCcee
Q 010325 185 ALFRRAQLKALVTIHSQEAGKGG-ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV 263 (513)
Q Consensus 185 ~~~s~eeL~~lv~~~~~e~~~~g-~L~~~E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~ 263 (513)
...++.|....+.++.--+--+. -=.+++..+++++..|+.--+. +.+.++++.++. ++++.-..++++.+
T Consensus 71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~~~-------~p~v~sp~~tvg-~v~~~k~~~gF~g~ 142 (503)
T KOG2550|consen 71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFIN-------NPIVISPTTTVG-EVKEAKEKHGFSGI 142 (503)
T ss_pred cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhccccc-------CCcccCCcccch-hhhhhccccccccc
Confidence 44566776666554321000001 1145678889999888764333 456688999998 99999999999999
Q ss_pred eeeeCC--CCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCC
Q 010325 264 PVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMT 341 (513)
Q Consensus 264 PV~~~~--~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T 341 (513)
||.++. ..+++|+|+.||+-.. .+....++++|....++.|...++.++=+.+++.+..-+||||+.|..+.++ +
T Consensus 143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~--~ 219 (503)
T KOG2550|consen 143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAML--S 219 (503)
T ss_pred ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeee--e
Confidence 999632 3689999999998754 4556789999988889999999999999999999999999999888888877 4
Q ss_pred CCCC
Q 010325 342 DGKK 345 (513)
Q Consensus 342 ~~di 345 (513)
..|+
T Consensus 220 rtDl 223 (503)
T KOG2550|consen 220 RTDL 223 (503)
T ss_pred hhhh
Confidence 4444
No 104
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.19 E-value=1e-05 Score=86.02 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=76.9
Q ss_pred cccccccccCcc-EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceee
Q 010325 226 KTAEEAMTPIES-TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRV 304 (513)
Q Consensus 226 ~~V~dIMtPr~~-vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~V 304 (513)
.++.++|.+... .+....+.+.. ++++.|...+.++..|++++ ++++|+++.+++...... ...+.+.+.....+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 350 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV 350 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence 567788853211 12333555666 89999999999999999865 899999999999765432 345666666777899
Q ss_pred CCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 305 PSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 305 pe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
++++++.+++..|.+.... +||||
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-~~v~~ 374 (400)
T PRK10070 351 DAQTPLSELLSHVGQAPCA-VPVVD 374 (400)
T ss_pred CCCCCHHHHHHHHHhCCCc-EEEEC
Confidence 9999999999999987766 88999
No 105
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.09 E-value=3.5e-06 Score=90.90 Aligned_cols=104 Identities=22% Similarity=0.252 Sum_probs=82.8
Q ss_pred CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC----CcEEEEEEhhhhhccCC------C----
Q 010325 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP----KNIIGLLLVKSLLTVRP------E---- 288 (513)
Q Consensus 223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~----d~ivGiV~~kDLl~~~~------~---- 288 (513)
+.+++|+|+|.+ .+++++.-..+. ...+.++.+.|..+||+|+.. +++.|+|....|+.... +
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 367789999997 999999999998 999999999999999998543 36889888777763110 0
Q ss_pred ----------------C----------------cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 289 ----------------T----------------ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 289 ----------------~----------------~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
. -.++..+|...+++|+++|++..++..|++-+.+-..||+
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~ 728 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP 728 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEec
Confidence 0 0134444556678899999999999999999998889988
No 106
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.04 E-value=3.4e-05 Score=81.01 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=70.6
Q ss_pred EEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccceeeCCCCCHHHHHHHHHh
Q 010325 240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQK 319 (513)
Q Consensus 240 ~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~ 319 (513)
....+.+.. ++++.+...+.....|++++ +++.|++..+++...... ...+.+.+.....+|++++++.+++..|.+
T Consensus 254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (363)
T TIGR01186 254 TKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKK-AQGLQDVLIDDIYTVDAGTLLRETVRKVLK 330 (363)
T ss_pred eecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhc-CCchhhhhccCCceECCCCcHHHHHHHHHh
Confidence 445566766 88999999999999998865 789999999998765432 235666667777899999999999999999
Q ss_pred CCceEEEEEe
Q 010325 320 GSSHMAAVVK 329 (513)
Q Consensus 320 ~~~~~a~VVD 329 (513)
.+.. +||+|
T Consensus 331 ~~~~-~~v~~ 339 (363)
T TIGR01186 331 AGIK-VPVVD 339 (363)
T ss_pred CCCC-EEEEC
Confidence 9988 99999
No 107
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.58 E-value=3.1e-05 Score=83.75 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=81.3
Q ss_pred CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccce
Q 010325 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP 302 (513)
Q Consensus 223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~~ 302 (513)
..+.+++++|+| +++++++++++. ++++.|+++++..+||++++ ++++|+|+.+|++....+. ..+++|....+
T Consensus 192 ~~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv 265 (449)
T TIGR00400 192 KPEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAV 265 (449)
T ss_pred CCCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCC
Confidence 356789999987 788899999998 99999999999999999865 7899999999999765432 23566555544
Q ss_pred eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 303 RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 303 ~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+..++..+.+.+..|.+++...++|.-
T Consensus 266 ~~~~~~~l~~~~~~~~~~R~~wL~v~~ 292 (449)
T TIGR00400 266 KPLDDSYFDTSILVMAKNRIIWLLVLL 292 (449)
T ss_pred CCCcchhhhchHHHHHHhccchHHHHH
Confidence 444567789999999999988888763
No 108
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.57 E-value=0.00011 Score=62.80 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=49.5
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+.++.++|.. .+.++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 3468899975 678899999998 99999999999999999865 78999999999974
No 109
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.54 E-value=4.5e-05 Score=84.45 Aligned_cols=111 Identities=10% Similarity=0.110 Sum_probs=76.3
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---------------
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------- 288 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~--------------- 288 (513)
...+|+++|+. .++++++++++++ ++.+.|.+++++.+||++++ ++++|+++.+|++.....
T Consensus 244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~ 320 (546)
T PRK14869 244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE 320 (546)
T ss_pred cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence 46789999982 3889999999999 99999999999999999865 899999999999864321
Q ss_pred -----------Ccccccccccccceee---CCCCCHHHHHHHHHhCCceEEEEEecCCCcccCC
Q 010325 289 -----------TETPVSAVSIRRIPRV---PSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (513)
Q Consensus 289 -----------~~~~v~dim~~~~~~V---pe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv 338 (513)
+..++.+++.+.+..+ +...+...+.+.|++.+....+++.. .-..||+
T Consensus 321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~-~ll~gIl 383 (546)
T PRK14869 321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG-LLLAAIL 383 (546)
T ss_pred chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH-HHHHHHH
Confidence 0012333333333322 33444556666677777666666542 1344555
No 110
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.47 E-value=0.00022 Score=60.60 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=50.9
Q ss_pred cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
++...++.++|.+ ++.+++.++++. ++++.+.+++..++||++++ ++++|+|+.+|++.
T Consensus 55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 3445679999986 667899999998 99999999999999999864 89999999999974
No 111
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.43 E-value=0.00032 Score=60.79 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=49.0
Q ss_pred cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+++++|.+ ++..++.++++. ++++.|.++++..+||++++ ++++|+|+.+|+..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 679999986 777899999998 99999999999999999865 78999999999863
No 112
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.40 E-value=0.00049 Score=75.24 Aligned_cols=100 Identities=14% Similarity=0.221 Sum_probs=71.9
Q ss_pred CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccc-
Q 010325 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI- 301 (513)
Q Consensus 223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~- 301 (513)
..+.+|+++|++..++++++++.++. ++++.|.+++..++||++++ ++++|+|+.+|++....... ...+- ..+.
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P~-a~~d~-~grL~ 233 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENPL-ELLDS-SKRYV 233 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccChh-hhhhh-ccCee
Confidence 45678999999767899999999998 99999999999999999865 78999999999997542211 11121 1111
Q ss_pred --eeeCCCCCHHHHHHHHHhCCceEEEE
Q 010325 302 --PRVPSDMPLYDILNEFQKGSSHMAAV 327 (513)
Q Consensus 302 --~~Vpe~~~l~d~L~~m~~~~~~~a~V 327 (513)
..+..+ ...+..+.+.+.+.+...|
T Consensus 234 V~~av~~~-~~~~ra~~Lv~aGvd~i~v 260 (502)
T PRK07107 234 VGAGINTR-DYAERVPALVEAGADVLCI 260 (502)
T ss_pred eeeccChh-hHHHHHHHHHHhCCCeEee
Confidence 123322 3456666677777777654
No 113
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.40 E-value=0.00019 Score=70.37 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=37.9
Q ss_pred cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 290 ~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+.++.++|.+++.++.+++++.++.+.|.+++.+-|||+|
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd 210 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD 210 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec
Confidence 4678899999999999999999999999999999999999
No 114
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00072 Score=73.59 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=73.3
Q ss_pred cccccccccCc---cEEEEeCC-CCccHHHHHHHHhcCCceeeee-eCCCCcEEEEEEhhhhhccCCC------------
Q 010325 226 KTAEEAMTPIE---STFSLDVN-SKLDWEAMGKILARGHSRVPVY-SGNPKNIIGLLLVKSLLTVRPE------------ 288 (513)
Q Consensus 226 ~~V~dIMtPr~---~vv~v~~d-~sl~~eal~~i~~~~~sr~PV~-~~~~d~ivGiV~~kDLl~~~~~------------ 288 (513)
.-..++|.|+. ....+..+ .+++ +....+.++.|+.+||+ +++.+.++|++..||+......
T Consensus 543 t~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~ 621 (696)
T KOG0475|consen 543 TLAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTS 621 (696)
T ss_pred chhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecc
Confidence 34556666532 24445444 6887 88889999999999999 4455789999999998742110
Q ss_pred ---------------CcccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEE
Q 010325 289 ---------------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVV 328 (513)
Q Consensus 289 ---------------~~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VV 328 (513)
.....++++...+.+|...++.+-+++.|++-+..-..|.
T Consensus 622 ~~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~ 676 (696)
T KOG0475|consen 622 IYFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT 676 (696)
T ss_pred cccCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc
Confidence 0123556655667789999999999999998887777664
No 115
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.36 E-value=0.00025 Score=60.66 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=50.3
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+.++.++|.+..++..+++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence 457889998754567899999998 99999999999999999864 78999999999874
No 116
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.33 E-value=0.00031 Score=60.34 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=49.8
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.+++++|.. ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 34568889975 778899999998 99999999999999999865 78999999999874
No 117
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.32 E-value=0.00033 Score=60.50 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=51.2
Q ss_pred CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC--CcEEEEEEhhhhhc
Q 010325 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP--KNIIGLLLVKSLLT 284 (513)
Q Consensus 223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~--d~ivGiV~~kDLl~ 284 (513)
+.+.+++++|+.-.++.+++.++++. ++++.|.++++.++||++++. ++++|+|+.+|++.
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 34667888997323688999999998 999999999999999998653 58999999999864
No 118
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.31 E-value=0.00028 Score=61.16 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=35.9
Q ss_pred ccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 291 ~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd 96 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVD 96 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC
Confidence 458888888889999999999999999999999999999
No 119
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.22 E-value=0.00088 Score=72.78 Aligned_cols=95 Identities=12% Similarity=0.163 Sum_probs=72.0
Q ss_pred cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccc----cccc
Q 010325 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVS----IRRI 301 (513)
Q Consensus 226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim----~~~~ 301 (513)
..++++|++ +++++++++++. ++++.|.+++...+||++++ ++++|+|+.+||+...... +..+.. ....
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vgaa 219 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGAA 219 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehhe
Confidence 569999996 789999999998 99999999999999999865 7899999999999754322 222211 1112
Q ss_pred eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 302 PRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+.......+.+..+.+.+... +|+|
T Consensus 220 --v~~~~~~~~ra~~Lv~aGVd~-i~~D 244 (475)
T TIGR01303 220 --VGINGDVGGKAKALLDAGVDV-LVID 244 (475)
T ss_pred --eeeCccHHHHHHHHHHhCCCE-EEEe
Confidence 333456778888888888777 4667
No 120
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.18 E-value=0.00059 Score=58.18 Aligned_cols=56 Identities=20% Similarity=0.401 Sum_probs=48.9
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+.++.++|.+ .+.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence 3468889975 677899999998 99999999999999999865 78999999999874
No 121
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.16 E-value=0.00061 Score=58.37 Aligned_cols=58 Identities=21% Similarity=0.399 Sum_probs=51.1
Q ss_pred CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+.+.++.++|.+ ++.+++.++++. ++++.+.+.+.+++||++++ ++++|+|+.+|++.
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence 356678999976 788899999998 99999999999999999864 79999999999974
No 122
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.15 E-value=0.00098 Score=72.52 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=72.6
Q ss_pred cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCccccccc----ccccc
Q 010325 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAV----SIRRI 301 (513)
Q Consensus 226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~di----m~~~~ 301 (513)
..++++|++ ++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|++...... +..+. +....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa 221 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA 221 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence 569999986 889999999998 99999999999999999865 7999999999999754322 22111 11222
Q ss_pred eeeCCCCCHHHHHHHHHhCCceEEEEEec
Q 010325 302 PRVPSDMPLYDILNEFQKGSSHMAAVVKA 330 (513)
Q Consensus 302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE 330 (513)
+.-.....+.+..|.+.+... +++|-
T Consensus 222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D~ 247 (479)
T PRK07807 222 --VGINGDVAAKARALLEAGVDV-LVVDT 247 (479)
T ss_pred --hccChhHHHHHHHHHHhCCCE-EEEec
Confidence 222334678888888888888 56773
No 123
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.12 E-value=0.0008 Score=56.76 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=41.9
Q ss_pred EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 238 vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
++++.+++++. ++++.|.+++..++||++++.++++|+++.+|++.
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 67899999998 99999999999999999865478999999999974
No 124
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.07 E-value=0.00087 Score=56.66 Aligned_cols=55 Identities=22% Similarity=0.475 Sum_probs=49.0
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+.+++++|.+ ++.+++++.++. ++++.+.+.+++++||+++ ++++|+|+.+|++.
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 4578999976 788899999998 9999999999999999986 79999999999874
No 125
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.07 E-value=0.0012 Score=55.32 Aligned_cols=54 Identities=15% Similarity=0.314 Sum_probs=47.2
Q ss_pred ccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
++.++|.+ .+..++.++++. ++++.|.+++++.+||++++ ++++|+++.+|++.
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 47888976 566789999998 99999999999999999865 78999999999874
No 126
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.07 E-value=0.00089 Score=56.20 Aligned_cols=56 Identities=21% Similarity=0.385 Sum_probs=48.8
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+..++++|.+ .+.+++.++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 3568899975 577789999998 99999999999999999865 78999999999874
No 127
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.06 E-value=0.00086 Score=57.98 Aligned_cols=58 Identities=19% Similarity=0.434 Sum_probs=51.1
Q ss_pred CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
....+++++|.+ .+.++++++++. ++++.|.+.+.+++||++++ ++++|+++.+|++.
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~ 123 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA 123 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence 456678999975 788899999998 99999999999999999854 78999999999974
No 128
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.06 E-value=0.0016 Score=71.18 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=78.1
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcc---cccccccccc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET---PVSAVSIRRI 301 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~---~v~dim~~~~ 301 (513)
+.+++++|++ .++++++.+.++. ++++.|.+++++.+||++++ ++++|+|+.+|++........ .-..+.....
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa 222 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA 222 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence 4578999983 3788899999998 99999999999999999876 799999999999865322111 1112223333
Q ss_pred eeeCCCCCHHHHHHHHHhCCceEEEEEec-CCCcccCC
Q 010325 302 PRVPSDMPLYDILNEFQKGSSHMAAVVKA-KGKSKTLP 338 (513)
Q Consensus 302 ~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE-~G~~~Giv 338 (513)
+.+.++ -.+.++.|.+.+.+++ |+|. +|...+++
T Consensus 223 i~~~~~--~~e~a~~L~~agvdvi-vvD~a~g~~~~vl 257 (486)
T PRK05567 223 VGVGAD--NEERAEALVEAGVDVL-VVDTAHGHSEGVL 257 (486)
T ss_pred cccCcc--hHHHHHHHHHhCCCEE-EEECCCCcchhHH
Confidence 444442 3788888889998965 5553 67766665
No 129
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.05 E-value=0.00087 Score=56.85 Aligned_cols=55 Identities=18% Similarity=0.389 Sum_probs=48.4
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+.++.++|.+ ++.+++.++++. ++++.|.+++..++||+++ ++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence 4578899965 677899999998 9999999999999999974 78999999999974
No 130
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.02 E-value=0.00066 Score=59.42 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=47.2
Q ss_pred cccccccccccCccEEEEe----CCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLD----VNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~----~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.+++++|++...++.++ +++++. ++++.|.+++.+++||++++.++++|+|+.+|++.
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 4567899997532333443 578888 99999999999999999864358999999999974
No 131
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.02 E-value=0.00034 Score=69.95 Aligned_cols=113 Identities=14% Similarity=0.129 Sum_probs=77.6
Q ss_pred cccccccccc-ceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCccccccCCCCCCCCcccccccccc
Q 010325 291 TPVSAVSIRR-IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK 369 (513)
Q Consensus 291 ~~v~dim~~~-~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~ 369 (513)
.+++++|.++ ++.+++++++.++++.|.+.+...++|+|+.|+..|++ |..|+.+..... .....|.... +.
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Giv--t~~dl~~~~~~~---~~~~~~v~~i--m~ 227 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVF--TDGDLRRALLGG---GSLKSEVRDF--MT 227 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEE--EcHHHHHHHhcC---CcccCcHHHh--CC
Confidence 4577888777 88999999999999999998899999999999999999 888887754321 1112222222 23
Q ss_pred CCceEecCCCCCccccccccccccCCCCccccccccccccCCCccceecc
Q 010325 370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIIT 419 (513)
Q Consensus 370 ~~~~~vd~~~~i~~~~~~~~~~l~~~~~t~~gl~~~~~~~e~g~liGIIT 419 (513)
.....++.+.++.+..+.+...-. ..+++.. ++|+++|+|+
T Consensus 228 ~~~~~v~~~~~l~~a~~~m~~~~~------~~lpVvd---~~g~l~GvI~ 268 (268)
T TIGR00393 228 LGPKTFKLDALLLEALEFLERRKI------TSLVVVD---DHNKVLGVLH 268 (268)
T ss_pred CCCeEECCCCcHHHHHHHHHHcCC------cEEEEEC---CCCeEEEEEC
Confidence 345578888887766665554321 1122210 3578999985
No 132
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.01 E-value=0.0012 Score=56.44 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=47.6
Q ss_pred ccccccccccCccEEEEeCC--CCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDVN--SKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d--~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+.++.++|.+ ++.++.++ .++. ++++.|.+++..++||++++ ++++|+|+.+|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 4578889975 67778776 6777 99999999999999999865 78999999999975
No 133
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.01 E-value=0.0012 Score=57.35 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=45.5
Q ss_pred cccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhh
Q 010325 228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL 283 (513)
Q Consensus 228 V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl 283 (513)
+.++|.+ ++.+++++.++. ++++.|.+++.+++||++++ ++++|+|+..|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 3456764 788899999998 99999999999999999865 7899999999985
No 134
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.99 E-value=0.0011 Score=56.06 Aligned_cols=57 Identities=19% Similarity=0.404 Sum_probs=50.0
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.++.++|.+ ++.+++.+.++. ++++.+.+++...+||++++ ++++|+++.+|++.
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 35578999975 678899999998 99999999999999999854 78999999999874
No 135
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=96.98 E-value=0.00059 Score=68.22 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=48.4
Q ss_pred cccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCCCCCCCCCcc
Q 010325 290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK 347 (513)
Q Consensus 290 ~~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv~~T~~dile 347 (513)
+....+||.+++++|+++++++++.++|++++....||+||+-..+||| |..|+++
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiV--t~~dl~~ 299 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIV--TQRDLLK 299 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeee--eHHHHhh
Confidence 3456789999999999999999999999999999999999877777777 6666544
No 136
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.98 E-value=0.0012 Score=56.53 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=49.4
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.++.++|.. ++.+++.++++. ++++.|.+++...+||+++ ++++|+|+..|++.
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 44678899964 788999999998 9999999999999999976 78999999999874
No 137
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.97 E-value=0.0024 Score=69.91 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=71.8
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccccc--
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI-- 301 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~v~dim~~~~-- 301 (513)
.+.+++++|+|+.++++++++.++. ++++.|.+++...+||++++ ++++|+|+.+|++....... ...|-.-+-.
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~~~p~-a~~D~~GrL~Vg 233 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNRGYPN-ASLDSNGQLLVG 233 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcccCch-hhhccCCCEEEE
Confidence 3567999999877899999999998 99999999999999999865 78999999999997542111 0111000101
Q ss_pred eeeCCCCCHHHHHHHHHhCCceEEEE
Q 010325 302 PRVPSDMPLYDILNEFQKGSSHMAAV 327 (513)
Q Consensus 302 ~~Vpe~~~l~d~L~~m~~~~~~~a~V 327 (513)
..|.......+.++.+.+.+..++.|
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~i 259 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVV 259 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 12433333466667777888777644
No 138
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=96.97 E-value=0.001 Score=68.78 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=52.1
Q ss_pred CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (513)
Q Consensus 223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~ 285 (513)
+.+.+|+++|++ ++.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|++.+
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 456789999986 788999999998 9999999999999999974 689999999999864
No 139
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.96 E-value=0.0015 Score=45.82 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=26.8
Q ss_pred ceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 301 ~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+.++++++++.++++.|++++.+.++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 30 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVD 30 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEEC
Confidence 46789999999999999999999999998
No 140
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.95 E-value=0.0022 Score=54.55 Aligned_cols=54 Identities=22% Similarity=0.485 Sum_probs=47.8
Q ss_pred ccccccccCccEEEEeCCCCccHHHHHHHHh-cCCceeeeeeCCCCcEEEEEEhhhhh
Q 010325 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILA-RGHSRVPVYSGNPKNIIGLLLVKSLL 283 (513)
Q Consensus 227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~-~~~sr~PV~~~~~d~ivGiV~~kDLl 283 (513)
.++++|+. .++++.++.++. ++.+.|.+ +++.++||++++..+++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 69999986 788999999998 99999999 79999999987522999999999974
No 141
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=96.94 E-value=0.0013 Score=55.74 Aligned_cols=57 Identities=23% Similarity=0.383 Sum_probs=49.8
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
..++.++|.+ ++.++++++++. ++++.|.+.+++.+||++++.++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4678999986 678899999998 99999999999999999752378999999999874
No 142
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.94 E-value=0.0014 Score=55.63 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=49.3
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.++.++|.+ ++.+++.++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 44568888975 788899999998 99999999999999999865 79999999999874
No 143
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=96.93 E-value=0.0015 Score=55.81 Aligned_cols=56 Identities=25% Similarity=0.532 Sum_probs=48.1
Q ss_pred cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC-CCcEEEEEEhhhhhc
Q 010325 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNIIGLLLVKSLLT 284 (513)
Q Consensus 226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~-~d~ivGiV~~kDLl~ 284 (513)
.++.++|.+ ++..++.++++. ++++.|.+++..++||++++ .++++|+|+.+|++.
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 347788875 778899999998 99999999999999999764 268999999999875
No 144
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.92 E-value=0.0013 Score=55.82 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=48.6
Q ss_pred cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.++.++|.+ ...+++.++++. ++++.+.+++..++||++++ ++++|+|+.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 578899975 677899999998 99999999999999999865 78999999999874
No 145
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.92 E-value=0.0015 Score=55.42 Aligned_cols=55 Identities=24% Similarity=0.448 Sum_probs=48.4
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+.++.++|.+ ++.++.+++++. ++++.|.+++..++||+++ ++++|+|+..|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 4568888874 788899999998 9999999999999999986 78999999999873
No 146
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.90 E-value=0.0027 Score=69.65 Aligned_cols=102 Identities=14% Similarity=0.201 Sum_probs=72.9
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc--ccccccccccc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRI 301 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~--~~v~dim~~~~ 301 (513)
.+.+|.++|++...++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++....... .+..|- ..+.
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p~~~~~~~d~-~~~l 237 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYPKLGKPSVGK-DGKL 237 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCcCccccccCC-CCCE
Confidence 4678999999865689999999998 99999999999999999865 78999999999997643211 111111 1111
Q ss_pred e---eeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 302 P---RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 302 ~---~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
. .|.......+-.+.+.+.+..++ ++|
T Consensus 238 ~vgaavg~~~~~~~r~~~l~~ag~d~i-~iD 267 (505)
T PLN02274 238 LVGAAIGTRESDKERLEHLVKAGVDVV-VLD 267 (505)
T ss_pred EEEEEEcCCccHHHHHHHHHHcCCCEE-EEe
Confidence 1 24433344566667777787775 556
No 147
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.89 E-value=0.0015 Score=58.29 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=49.7
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.+++++|++ ++..+++++++. ++++.+.+.++..+||+++ ++++|+|+.+|++.
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 45679999986 677899999998 9999999999999999975 78999999999874
No 148
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.89 E-value=0.0014 Score=57.69 Aligned_cols=56 Identities=18% Similarity=0.394 Sum_probs=49.4
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
...++.++|.+ ++..++.++++. ++++.|.+.+..++||+++ ++++|+++.+|++.
T Consensus 76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 34478999975 788899999998 9999999999999999986 89999999999974
No 149
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.88 E-value=0.0012 Score=56.79 Aligned_cols=57 Identities=12% Similarity=0.353 Sum_probs=50.4
Q ss_pred CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+.+.++.++|.+ ++.+++.++++. ++++.+.+.+.+.+||+++ ++++|+++.+|++.
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 456678899975 788899999998 9999999999999999985 79999999999974
No 150
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.88 E-value=0.0016 Score=55.15 Aligned_cols=56 Identities=20% Similarity=0.354 Sum_probs=48.6
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
..++.++|.+ ++.++..++++. ++++.+.+.+..++||++++ ++++|+++.+|++.
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 57 TTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred cCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 3458899975 677899999998 99999999999999999764 78999999999874
No 151
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.86 E-value=0.002 Score=54.24 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=47.2
Q ss_pred cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.++.++|.+ +..+++.+.++. ++++.|.+++..++||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence 357788875 677899999998 9999999999999999973 79999999999874
No 152
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.85 E-value=0.0015 Score=56.48 Aligned_cols=57 Identities=16% Similarity=0.378 Sum_probs=50.0
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.++.++|.+ .+.+++.++++. ++++.+.+.+...+||.+++ ++++|+|+.+|++.
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 45578889875 788999999998 99999999999999999865 78999999999875
No 153
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=96.84 E-value=0.0018 Score=66.66 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=51.0
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~ 285 (513)
+.+++++|++ ++.++.+++++. ++++.|.+++..++||++++ ++++|+|+.+|++.+
T Consensus 262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence 4568999986 788899999998 99999999999999999865 689999999999864
No 154
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.83 E-value=0.0019 Score=54.75 Aligned_cols=57 Identities=14% Similarity=0.306 Sum_probs=49.9
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~ 285 (513)
+.+++++|.+ ++..++.++++. ++++.+.+++...+||++++ ++++|+|+..|++..
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence 4568899976 678899999998 99999999999999999865 789999999999853
No 155
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.82 E-value=0.0017 Score=55.77 Aligned_cols=57 Identities=19% Similarity=0.280 Sum_probs=50.6
Q ss_pred CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
..+.++.++|.+ .+.+++.+++++ ++++.+.+.+++.+||+++ ++++|+++.+|++.
T Consensus 64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 456778999976 778899999998 9999999999999999975 78999999999874
No 156
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.82 E-value=0.0019 Score=54.73 Aligned_cols=56 Identities=23% Similarity=0.261 Sum_probs=49.3
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.+++++|.+ ++..+++++++. ++++.|.+++..++||+++ ++++|+++.+|++.
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 45578899975 788899999998 9999999999999999975 78999999999874
No 157
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.80 E-value=0.0022 Score=53.93 Aligned_cols=56 Identities=27% Similarity=0.452 Sum_probs=46.4
Q ss_pred ccccccccccCccEEEEeC-CCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDV-NSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~-d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+.++.++|.+ ++..+.. ++++. ++++.+.+.++.++||++++ ++++|+|+.+|++.
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence 4578899964 3444556 89998 99999999999999999864 78999999999874
No 158
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.80 E-value=0.0017 Score=57.46 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=50.5
Q ss_pred CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
..+.+++++|.+ ++..++.++++. ++++.|.+.+.+++||++ + ++++|+++.+|++.
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~ 134 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR 134 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence 456789999975 688899999998 999999999999999998 4 89999999999874
No 159
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.79 E-value=0.0022 Score=53.85 Aligned_cols=55 Identities=29% Similarity=0.563 Sum_probs=48.1
Q ss_pred cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
..+.++|.+ ++.+++.++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 457888875 678899999998 99999999999999999865 78999999999874
No 160
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.78 E-value=0.0023 Score=54.10 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=49.2
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.++.++|.+ .+.+++.++++. ++++.|.+.+.+.+||.+ + ++++|+|+.+|++.
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence 45678899975 788899999998 999999999999999998 3 78999999999874
No 161
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.77 E-value=0.0025 Score=53.66 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=48.0
Q ss_pred cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
..+.++|.+ ++.+++.++++. ++++.+.+.+...+||++++ ++++|+++.+|++.
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence 457788875 788899999998 99999999999999999764 78999999999874
No 162
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.75 E-value=0.0024 Score=55.00 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=50.1
Q ss_pred CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 223 l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
..+.++.++|.. ++.+++.++++. ++++.+.+.+...+||++++ ++++|+++.+|++.
T Consensus 64 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 64 ERDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred ccCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 356678888864 778899999998 99999999999999999865 78999999999874
No 163
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.75 E-value=0.0022 Score=53.61 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=48.3
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhh
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL 283 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl 283 (513)
+..+.++|.+ +..+++.++++. ++++.+.+++...+||+++ ++++|+++.+|++
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~ 103 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA 103 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence 4568889976 788899999998 9999999999999999985 7999999999987
No 164
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.75 E-value=0.0023 Score=54.20 Aligned_cols=56 Identities=23% Similarity=0.464 Sum_probs=48.8
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.++.++|.+ ++..+.+++++. ++++.+.+++...+||++++ +++|+++.+|++.
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence 45578899975 788899999998 99999999999999999863 8999999999873
No 165
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.72 E-value=0.0021 Score=54.61 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=48.7
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+..+.++|.+ ++..++.++++. ++++.+.+++..++||+++ ++++|+++.+|++.
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 4578899975 677899999998 9999999999999999986 79999999999974
No 166
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.72 E-value=0.0023 Score=55.16 Aligned_cols=57 Identities=19% Similarity=0.403 Sum_probs=49.8
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.++.++|.+ ++..++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|++.
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 45678889964 678899999998 99999999999999999865 78999999999874
No 167
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.70 E-value=0.0031 Score=54.43 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=44.9
Q ss_pred ccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 229 EEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 229 ~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+++|.. ++.++..++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus 68 ~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~ 119 (120)
T cd04641 68 RSQDFE--GVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ 119 (120)
T ss_pred cccCCC--CCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence 445543 677899999998 99999999999999999865 78999999999874
No 168
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.70 E-value=0.0025 Score=54.48 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=45.9
Q ss_pred cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
..++++|.+....+..+.++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 45889997633333334499998 99999999999999999865 78999999999863
No 169
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.68 E-value=0.003 Score=53.20 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=49.3
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.++.++|.+ ++..++.++++. ++++.+.+.+...+||++++ ++++|+++.+|++.
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 35668889875 778899999998 99999999999999999865 78999999999874
No 170
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=96.66 E-value=0.0037 Score=56.05 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=27.5
Q ss_pred cceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
.+.++++++++.++++.|.+++.+.+||+|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD 31 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD 31 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 457899999999999999999999999999
No 171
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.64 E-value=0.0034 Score=52.46 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=28.1
Q ss_pred ccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 299 ~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
++++.+++++++.++++.|.+++...+||+|
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d 31 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELANVKALPVLD 31 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHcCCCeEEEEC
Confidence 3567899999999999999999999999999
No 172
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.64 E-value=0.0022 Score=54.65 Aligned_cols=55 Identities=13% Similarity=0.276 Sum_probs=46.6
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.+++++|.+ .+.+++.++++. ++++.|.+.+ .+||++++ ++++|+++.+|++.
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~ 115 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILK 115 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhc
Confidence 46679999986 678899999998 9999998755 59999865 78999999999875
No 173
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.62 E-value=0.0029 Score=53.53 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=48.2
Q ss_pred cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
..+.++|.. ++..++.+.++. ++++.|.+++..++||++++ ++++|+++.+|+..
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 468888864 788899999998 99999999999999999765 78999999999864
No 174
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.58 E-value=0.0033 Score=53.18 Aligned_cols=55 Identities=24% Similarity=0.433 Sum_probs=48.6
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+.++.++|.. ++.++++++++. ++++.+.+++.+++||+++ ++++|+++.+|++.
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 3568888864 788899999998 9999999999999999986 78999999999874
No 175
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.53 E-value=0.0083 Score=63.53 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=79.4
Q ss_pred ccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC----------ccccccc---ccc
Q 010325 233 TPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----------ETPVSAV---SIR 299 (513)
Q Consensus 233 tPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~----------~~~v~di---m~~ 299 (513)
+++...+++.+..++- ++...+.++++.|+||.+.+.++++.+++.+-++...... ..++.|. ...
T Consensus 159 ~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~ 237 (381)
T KOG1764|consen 159 TLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS 237 (381)
T ss_pred ccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence 3333447888888876 8888999999999999985557999999999998643211 1122222 123
Q ss_pred cceeeCCCCCHHHHHHHHHhCCceEEEEEecCCCcccCC
Q 010325 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (513)
Q Consensus 300 ~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVDE~G~~~Giv 338 (513)
.+..+.+++++.++++.|...+..-+||||++|+.+|..
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~ 276 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNY 276 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecce
Confidence 577899999999999999999999999999655554444
No 176
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.51 E-value=0.0051 Score=42.95 Aligned_cols=46 Identities=17% Similarity=0.457 Sum_probs=39.8
Q ss_pred EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (513)
Q Consensus 238 vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~ 285 (513)
+.+++.++++. ++++.+.+.+++.+||++++ ++++|+++.+++...
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence 35678888988 99999999999999999865 789999999998753
No 177
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.50 E-value=0.0036 Score=54.63 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=49.6
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeC-CCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~-~~d~ivGiV~~kDLl~ 284 (513)
.+.+++++|++ ++++++++.++. ++++.|.+.++..+||.++ +.++++|+|+.+|++.
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45678899975 788899999998 9999999999999999853 4478999999999874
No 178
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.48 E-value=0.0069 Score=51.05 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=46.7
Q ss_pred ccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.++|.+ ++.+++.+++++ ++++.+.+++...+||++++ ++++|+++.+|++.
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence 47788864 677899999998 99999999999999999865 78999999999863
No 179
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.48 E-value=0.0037 Score=53.91 Aligned_cols=55 Identities=29% Similarity=0.448 Sum_probs=48.2
Q ss_pred cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
..++++|.+ +++.++.++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence 357888864 788899999998 99999999999999999765 78999999999874
No 180
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.46 E-value=0.0079 Score=52.75 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=28.5
Q ss_pred ccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 299 ~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+++.++++++++.++++.|++++...+||+|
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd 32 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVD 32 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 5678899999999999999999989999999
No 181
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.45 E-value=0.0067 Score=51.32 Aligned_cols=56 Identities=16% Similarity=0.276 Sum_probs=48.2
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+..++++|.+ ++.+++.++++. ++++.+.+++...+||++++ ++++|+++.+|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 3467888875 688899999998 99999999999999999865 78999999999874
No 182
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.31 E-value=0.0065 Score=51.23 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=47.8
Q ss_pred cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
..+.++|.+ ++..++.+.++. ++++.|.+.+...+||++++ ++++|+++.+|++.
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 457788864 778899999998 99999999999999999865 78999999999874
No 183
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.29 E-value=0.0076 Score=52.55 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=44.3
Q ss_pred cccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 230 EAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 230 dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+.|.+ ++.++++++++. ++++.|.+++.+++||++++ ++++|+|+..|++.
T Consensus 75 ~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSR--PLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred ccccC--CCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 45543 678899999998 99999999999999999865 78999999999874
No 184
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.28 E-value=0.0063 Score=67.91 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=51.6
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC-CcEEEEEEhhhhhccC
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP-KNIIGLLLVKSLLTVR 286 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~-d~ivGiV~~kDLl~~~ 286 (513)
+.+++|+|++ ++.+++++++++ ++++.|.+++.+++||+|++. ++++|+|+.+|+++..
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 4679999986 778899999998 999999999999999998653 4799999999998653
No 185
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=96.22 E-value=0.0051 Score=56.46 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=34.2
Q ss_pred ccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 293 v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
...+|.+|+++|.+++++.++++.|++++..-+||++
T Consensus 67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~ 103 (187)
T COG3620 67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE 103 (187)
T ss_pred HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee
Confidence 4456889999999999999999999999999999998
No 186
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.18 E-value=0.0081 Score=50.98 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=43.6
Q ss_pred ccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 231 AMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 231 IMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+|.+ ++.+++.++++. ++++.|.+++...+||+++ ++++|+|+.+|++.
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence 7875 677899999998 9999999999999999953 78999999999874
No 187
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.16 E-value=0.0074 Score=50.97 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=45.0
Q ss_pred ccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.++|. .+.+++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|++.
T Consensus 58 ~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 110 (111)
T cd04590 58 DLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE 110 (111)
T ss_pred CHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence 4556664 457789999998 99999999999999999865 78999999999874
No 188
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.11 E-value=0.0078 Score=54.06 Aligned_cols=56 Identities=13% Similarity=0.344 Sum_probs=49.5
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.++.++|.+ ++.+++.++++. ++++.+.+.+++++||+++ ++++|+++.+|++.
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 45678899976 788899999998 9999999999999999986 78999999999873
No 189
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.08 E-value=0.011 Score=63.83 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=36.0
Q ss_pred ccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 291 ~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
.+++++|.+++.++++++++.++++.|.+++...+||+|
T Consensus 335 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd 373 (454)
T TIGR01137 335 ATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT 373 (454)
T ss_pred CCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 578898888999999999999999999999988999999
No 190
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.06 E-value=0.0085 Score=51.26 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=47.0
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCC---ceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH---SRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~---sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.+++++|.+ ++..+++++++. ++++.|.+++. ...||++++ ++++|+|+.+|++.
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence 45679999976 788899999998 99999988875 345677655 89999999999874
No 191
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.05 E-value=0.015 Score=59.44 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=73.4
Q ss_pred HHHHHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCccc
Q 010325 213 ETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETP 292 (513)
Q Consensus 213 E~~~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~~~~ 292 (513)
-++-++++=...=.++++||.+ .+......+......+++.+...+.+.+-+++ ..++.+|+++..++...
T Consensus 261 V~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~------- 331 (386)
T COG4175 261 VRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA------- 331 (386)
T ss_pred HHHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc-------
Confidence 4566777777777899999985 23222222222211567777777766666666 44679999999877643
Q ss_pred ccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 293 v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
.+..++..|+.++++.+.+....+...+++ |+|
T Consensus 332 ---~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvd 364 (386)
T COG4175 332 ---ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVD 364 (386)
T ss_pred ---cccccccccCccchHHHHHHHHhcCCCcee-EEc
Confidence 245677889999999999999999988876 667
No 192
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=95.92 E-value=0.011 Score=64.08 Aligned_cols=69 Identities=23% Similarity=0.289 Sum_probs=59.2
Q ss_pred HHHHHHHhhc---CcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325 213 ETTIISGALD---LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (513)
Q Consensus 213 E~~~I~~vl~---l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~ 286 (513)
++++...++. =...+|+++||- ++++++.++.+= ||+-.|.+.+..++||.++ ++++|+|+..|++...
T Consensus 198 ~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 198 RKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLF 269 (610)
T ss_pred hHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhh
Confidence 4556666665 256789999995 999999999986 9999999999999999986 7999999999999754
No 193
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.91 E-value=0.019 Score=60.85 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=62.5
Q ss_pred HHHHhhcCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-Cccccc
Q 010325 216 IISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-TETPVS 294 (513)
Q Consensus 216 ~I~~vl~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~-~~~~v~ 294 (513)
.+..+-...=.+++++|.|...+. ..+.+ .++ .+++.+.+.|+++ |+++..+....... .+..+.
T Consensus 264 ~~~~~~~~~~l~a~~~m~~~~~~~--~~~~~---~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 329 (382)
T TIGR03415 264 FVAHTNPLNVLTARSLMRPLTDLE--HVDGG---WCV---SDRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVE 329 (382)
T ss_pred HhcccCcccceeHHHHhccccccc--ccCcc---hhh---hhcccceeEeecc------ceecccchHhHhhcccccchh
Confidence 334444456678999997633322 22222 222 3378888888864 88887776543221 223455
Q ss_pred ccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 295 AVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 295 dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
+ ......+|++++++.+++..+.+.... ++|+|
T Consensus 330 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 362 (382)
T TIGR03415 330 S-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVE 362 (382)
T ss_pred h-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEee
Confidence 6 467788999999999999988887765 44667
No 194
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.67 E-value=0.017 Score=48.37 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=45.7
Q ss_pred ccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.++|.+ ++.+++.++++. ++++.+.+++...+||+++ ++++|+++.+|++.
T Consensus 53 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 46677864 677789999998 9999999999999999985 68999999999874
No 195
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=95.55 E-value=0.033 Score=46.01 Aligned_cols=53 Identities=23% Similarity=0.460 Sum_probs=46.1
Q ss_pred cccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 228 V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+.++|.+ ++.++..+.++. ++++.+.+.+.+.+||++++ ++++|+++.+|++.
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 5667764 677888999998 99999999999999999876 89999999999874
No 196
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=95.53 E-value=0.016 Score=48.44 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=43.3
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
+..+.++|.+ ++.+++.++++. ++.+.+.+ . ...||++++ ++++|+++.+|++.
T Consensus 56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~~-~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDEG-GKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEecC-CeEEEEEeHHHhhc
Confidence 3568888865 677899999998 98888887 3 347888765 78999999999874
No 197
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.52 E-value=0.017 Score=62.68 Aligned_cols=60 Identities=25% Similarity=0.426 Sum_probs=53.2
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~ 286 (513)
.+.+++++|++ .++++++++.++. ++++.|.+++...+||++++ ++++|+|+.+|++...
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR 200 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence 35679999984 4788999999998 99999999999999999865 8899999999999764
No 198
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=94.11 E-value=0.064 Score=55.25 Aligned_cols=59 Identities=17% Similarity=0.348 Sum_probs=52.9
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~ 286 (513)
++.++..+||. ..+++.+.+++. .+.+.|.-.++.-+||++++ .+++|+|+.+|++..+
T Consensus 247 ~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~l 305 (432)
T COG4109 247 PSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSL 305 (432)
T ss_pred CCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHH
Confidence 66788999996 788999999998 99999999999999999876 7999999999999754
No 199
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=93.51 E-value=0.073 Score=57.48 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=53.6
Q ss_pred cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (513)
Q Consensus 222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~ 285 (513)
.-.+..++++|.+ +++++.+++..+ ++.+.+.+++....||++++ ++++|+++..|++..
T Consensus 192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidv 251 (451)
T COG2239 192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDV 251 (451)
T ss_pred CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHH
Confidence 4477789999997 589999999988 99999999999999999876 899999999999853
No 200
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=90.73 E-value=0.44 Score=50.28 Aligned_cols=56 Identities=21% Similarity=0.453 Sum_probs=48.8
Q ss_pred cccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (513)
Q Consensus 226 ~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~ 286 (513)
..+.+.|.+ ++.++++++++. +++..+.++++. +||++++ ++++|+|+..+++...
T Consensus 302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDAL 357 (363)
T ss_pred Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHH
Confidence 457888875 677899999998 999999999999 9999865 8999999999998654
No 201
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=90.43 E-value=0.26 Score=51.75 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=52.2
Q ss_pred cCcccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (513)
Q Consensus 222 ~l~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~ 285 (513)
.=..+.+.++||++. ++.+.+.+++ ++-+.+.++.-.++||++++ |+++-++...||.+.
T Consensus 167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKN 226 (503)
T ss_pred hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhhh
Confidence 445677899999965 7788899998 99999999999999999876 999999999999864
No 202
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=86.64 E-value=0.17 Score=41.39 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=38.9
Q ss_pred cccCCceEecCCCCCccccccccccccCC-CCccccccc-cccccCC-Cc
Q 010325 367 DEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GE 413 (513)
Q Consensus 367 ~~~~~~~~vd~~~~i~~~~~~~~~~l~~~-~~t~~gl~~-~~~~~e~-g~ 413 (513)
+...+.|.++++++++++++.+...++.+ +.|++|+++ .+++++. |+
T Consensus 2 ~~~~~~~~v~G~~~l~~l~~~~~~~l~~~~~~Tl~G~i~~~l~~iP~~Ge 51 (81)
T PF03471_consen 2 KLDDGTYIVSGSTPLDDLNELLGLDLPEEDYDTLGGLILEQLGRIPEVGE 51 (81)
T ss_dssp EETTSEEEEETTSBHHHHHHHHTS-TTTTTTSBHHHHHHHHHTSS--TTS
T ss_pred eEcCCEEEEEecCCHHHHHHHHCcCCCccchhhHHHHHHHHcCCCCCCCe
Confidence 35678899999999999999999999987 999999999 7777776 55
No 203
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=86.55 E-value=1.2 Score=47.66 Aligned_cols=58 Identities=17% Similarity=0.332 Sum_probs=48.2
Q ss_pred ccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC
Q 010325 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP 287 (513)
Q Consensus 225 ~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~ 287 (513)
+..+.++|.+ +..+++.++++. +++..+.++.+. +||++++ ++++|+|+..+++....
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD 393 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 3467778865 677899999998 999999987766 9999865 89999999999987643
No 204
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=86.28 E-value=2.9 Score=42.01 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=47.5
Q ss_pred EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC-----------------ccccccccccc
Q 010325 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----------------ETPVSAVSIRR 300 (513)
Q Consensus 238 vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~~~~-----------------~~~v~dim~~~ 300 (513)
++.|..|. + ||+++- +|+-|.++ ++++=+=+..+++..+.++ ...+.+.+...
T Consensus 189 ivfVTHDi--d-EA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 189 IVFVTHDI--D-EALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred EEEEecCH--H-HHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 44444443 4 666542 46777764 6777777777776543211 01222222211
Q ss_pred c----eeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 301 I----PRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 301 ~----~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
. -.++......+++..+...+...++|+|
T Consensus 259 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd 291 (309)
T COG1125 259 EPADGEPLLEGFVDRDALSDFLARGRSVLPVVD 291 (309)
T ss_pred ccccCCccccchhhHHHHHHHHhcCCceeEEEC
Confidence 1 1245555666788888889999999999
No 205
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=61.10 E-value=32 Score=39.46 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=36.4
Q ss_pred ccccccccccceeeCCCCCHHHHHHHHHhCCceEEEEEe
Q 010325 291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (513)
Q Consensus 291 ~~v~dim~~~~~~Vpe~~~l~d~L~~m~~~~~~~a~VVD 329 (513)
..|+++|.+++.++..+++..|+-+.++....+..|+||
T Consensus 588 v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~ 626 (931)
T KOG0476|consen 588 VKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVE 626 (931)
T ss_pred EEeeeeccccceeeeccCcHHHHHHHHHhCccceecccc
Confidence 578999999999999999999999999888899999998
No 206
>PF14163 SieB: Superinfection exclusion protein B
Probab=55.91 E-value=53 Score=29.91 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=14.6
Q ss_pred CCChhHHHHHHHhhcCcc
Q 010325 208 ELTHDETTIISGALDLTE 225 (513)
Q Consensus 208 ~L~~~E~~~I~~vl~l~~ 225 (513)
.|+++|+..++..+.-++
T Consensus 78 ~Lt~~EkavL~~~~~~~~ 95 (151)
T PF14163_consen 78 SLTPEEKAVLREFYIQGN 95 (151)
T ss_pred hCCHHHHHHHHHHHHCCC
Confidence 589999999988876664
No 207
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=49.16 E-value=17 Score=38.62 Aligned_cols=47 Identities=6% Similarity=0.188 Sum_probs=39.1
Q ss_pred ccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325 236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (513)
Q Consensus 236 ~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~ 286 (513)
+++.++++++++. +++..+.++++. +||+++ ++++|+|+..+++...
T Consensus 333 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 333 AAPTVINPDTLMR-DVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHAL 379 (382)
T ss_pred ccCcccCCCCcHH-HHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHH
Confidence 3677889999999 999988887764 788764 8999999999998653
No 208
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=44.47 E-value=18 Score=41.27 Aligned_cols=58 Identities=10% Similarity=0.124 Sum_probs=47.4
Q ss_pred cccccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC-CcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP-KNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~-d~ivGiV~~kDLl~ 284 (513)
..+.|+++|.. ++.+|..+.|.. |..+.+.......+|++++.. .-++|.|..+.|..
T Consensus 586 h~v~VE~iMV~--dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ 644 (931)
T KOG0476|consen 586 HTVKVEHIMVT--DVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTA 644 (931)
T ss_pred eEEEeeeeccc--cceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHH
Confidence 45689999995 999999999998 877777666688999998532 34789999999874
No 209
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=43.65 E-value=26 Score=39.34 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=44.7
Q ss_pred ccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325 229 EEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (513)
Q Consensus 229 ~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~ 285 (513)
...|.| ..++++.++++. .+...++.-|...+-|+... ++++|+++.||+...
T Consensus 693 ~p~~n~--sPytV~~~mSl~-k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 693 HPFMNP--SPYTVPETMSLA-KAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLARY 745 (762)
T ss_pred ccccCC--CCcccCcccchH-HHHHHHHHhcceeEEEecCC-CceeEEEehhhhhhH
Confidence 345655 667899999998 99999999999999999865 678999999999854
No 210
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=35.43 E-value=36 Score=25.51 Aligned_cols=17 Identities=41% Similarity=0.948 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010325 35 WFVYAGISCVLVLFAGIMS 53 (513)
Q Consensus 35 ~~~~~~i~~~LlllsafFS 53 (513)
||+|+++ +-|++||+++
T Consensus 3 wWvY~vi--~gI~~S~ym~ 19 (52)
T PF14147_consen 3 WWVYFVI--AGIIFSGYMA 19 (52)
T ss_pred chHHHHH--HHHHHHHHHH
Confidence 6666433 3456677654
No 211
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=33.99 E-value=60 Score=27.55 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=13.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010325 30 FGSVWWFVYAGISCVLVLFAGIMSGLTL 57 (513)
Q Consensus 30 ~~s~~~~~~~~i~~~LlllsafFSg~E~ 57 (513)
|.|-.++++.++++++||+|+=.|+.|.
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 3466654444444444555544444444
No 212
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=33.85 E-value=41 Score=37.07 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 250 eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
.+.+.+.+.|-+-++|+++ +++.|+|++||+++
T Consensus 417 ~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK 449 (681)
T COG2216 417 AAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcc
Confidence 4455667788889999986 79999999999985
No 213
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=33.72 E-value=63 Score=22.52 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=15.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 010325 25 SEGIPFGSVWWFVYAGISCVLVLFAGIM 52 (513)
Q Consensus 25 ~~~~~~~s~~~~~~~~i~~~LlllsafF 52 (513)
+-..-.-|.+|.+++ +.++-+++|..|
T Consensus 11 ~VELNRTSLy~GlLl-ifvl~vLFssYf 37 (39)
T PRK00753 11 PVELNRTSLYLGLLL-VFVLGILFSSYF 37 (39)
T ss_pred CceechhhHHHHHHH-HHHHHHHHHhhc
Confidence 344556788997653 344444555444
No 214
>CHL00038 psbL photosystem II protein L
Probab=33.31 E-value=56 Score=22.69 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=14.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHH
Q 010325 27 GIPFGSVWWFVYAGISCVLVLFAGIM 52 (513)
Q Consensus 27 ~~~~~s~~~~~~~~i~~~LlllsafF 52 (513)
..-.-|.+|.++ ++.++.+++|..|
T Consensus 12 ELNRTSLy~GLL-lifvl~vlfssyf 36 (38)
T CHL00038 12 ELNRTSLYWGLL-LIFVLAVLFSNYF 36 (38)
T ss_pred chhhhhHHHHHH-HHHHHHHHHHHHh
Confidence 345678888765 3444445555544
No 215
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=31.56 E-value=1.3e+02 Score=30.42 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010325 155 VWLVRILMIICYPIAYPIGKILDWV 179 (513)
Q Consensus 155 a~~~~~l~~l~~Pl~~~~~~~~~~l 179 (513)
.++.++++-+|+|++|.-+++.++.
T Consensus 209 tYi~YlliPiF~P~~~~Yg~~ynk~ 233 (285)
T PF03563_consen 209 TYICYLLIPIFYPIAYLYGWLYNKS 233 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677788899999888888874
No 216
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=30.92 E-value=4.1e+02 Score=24.20 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=18.7
Q ss_pred HhhhHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010325 145 RYGLAVGAN----FVWLVRILMIICYPIAYPIGKILDWVL 180 (513)
Q Consensus 145 ~~~~~i~~~----~a~~~~~l~~l~~Pl~~~~~~~~~~ll 180 (513)
-.|..++.. ++.....+..+++-+.+|+.++++++.
T Consensus 105 ~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~ 144 (183)
T PF01595_consen 105 ILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFIS 144 (183)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555542 333333444455555667777666653
No 217
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=28.28 E-value=31 Score=37.00 Aligned_cols=93 Identities=18% Similarity=0.139 Sum_probs=50.6
Q ss_pred HHHHHHHHHhC-CceEEEEEecCCCcccCCCCCCCCCccccccCCCCCCCCccccccccccCCceEecCCCCCcccccc-
Q 010325 310 LYDILNEFQKG-SSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMN- 387 (513)
Q Consensus 310 l~d~L~~m~~~-~~~~a~VVDE~G~~~Giv~~T~~dile~i~g~~~~s~~~~p~~~~~~~~~~~~~vd~~~~i~~~~~~- 387 (513)
+.++++.+.+. ..++.+|.++ +.|++ |-+||. .+.+..... .++++.+..++++.-.
T Consensus 293 ~~~~~~~l~~~~~v~v~~v~n~---VagLl--Tg~Di~-~l~~~~~~d---------------~~liP~~~fldd~t~~~ 351 (404)
T TIGR03278 293 IREIFRALGGGDLVNVVPVKKD---IACLI--TEDDLE-ELDLSEVKE---------------TVIIPGRAFVHDMVAEE 351 (404)
T ss_pred HHHHHHHHhcCceEEEEEecCc---ccccc--hHHHHH-HhcCCCCCC---------------EEEecCccccccccHHH
Confidence 34555555433 4677777776 99999 999998 776443332 2344444444332221
Q ss_pred ccccccCCCCccccccccccccCCCccceecchHHHHHH
Q 010325 388 RLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEE 426 (513)
Q Consensus 388 ~~~~l~~~~~t~~gl~~~~~~~e~g~liGIITleDv~ee 426 (513)
+...+......+.|-... --||++-|..|.+++++.
T Consensus 352 ~~~~l~~~v~v~~~~~~~---~~~~~~~~~~~~~~~~~~ 387 (404)
T TIGR03278 352 ILKRDGVDRIVVRGPDRL---TADGEMSGGMTREEVLEF 387 (404)
T ss_pred HHHHhCCcEEEecCCcee---eecceecccccHHHHHHH
Confidence 111111111111221110 038999999999999875
No 218
>TIGR00827 EIIC-GAT PTS system, galactitol-specific IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The only characterized member of this family of PTS transporters is the E. coli galactitol transporter. Gat family PTS systems typically have 3 components: IIA, IIB and IIC. This family is specific for the IIC component of the PTS Gat family.
Probab=26.96 E-value=2.1e+02 Score=30.76 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=41.2
Q ss_pred HHHHHHhhccchhhHHHHhhhH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Q 010325 128 VTFVLFFGEVIPQAICTRYGLA-VGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALV 196 (513)
Q Consensus 128 t~lilifGEiiPK~la~~~~~~-i~~~~a~~~~~l~~l~~Pl~~~~~~~~~~llg~~~~~~s~eeL~~lv 196 (513)
..+.+.++|..-|.+-.-|... ++.. +.....+.|+.++++|+.|++=|.++..++.|.+++=+
T Consensus 146 ~i~~l~~aD~~a~~~q~~~glpGis~p-----h~~~~~~~pia~~~n~i~dkIPglnki~~d~~~i~kk~ 210 (407)
T TIGR00827 146 AAVALKVADWTAPMVSNFYELEGISIP-----TGSTISYAPGIVLVDAIIEKIPGIKHWNADADTIQRRF 210 (407)
T ss_pred HHHHHHHHHHhcHHHHHhcCCCCeeec-----chhhHhhhhHHHHHHHHHHhCcCcccCCCCHHHHhhhh
Confidence 3455788888877765544433 2211 22334557999999999999867666566666666533
No 219
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=26.70 E-value=83 Score=35.49 Aligned_cols=54 Identities=11% Similarity=0.213 Sum_probs=41.5
Q ss_pred ccccccccCccEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 010325 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (513)
Q Consensus 227 ~V~dIMtPr~~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~ 285 (513)
..+++|-+ .++++....+.+ -+++++++-|.+..-|-++ +++.|+|+.||+++.
T Consensus 640 ~lk~il~~--tp~tv~d~tp~~-~v~~~F~~lg~~~~~v~~~--G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 640 DLKDILDM--TPFTVTDLTPME-TVVDLFRKLGLRQILVTKN--GILLGIITKKDCLRH 693 (696)
T ss_pred CceeeccC--CcccccccCcHH-HHHHHHHhhCceEEEEccC--CeeEeeeehHHHHHh
Confidence 34556543 456667777776 7889999999988888653 899999999999865
No 220
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=26.18 E-value=69 Score=33.44 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=37.7
Q ss_pred cEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 010325 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (513)
Q Consensus 237 ~vv~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~~~ 286 (513)
++.+++.++++. +.+..+.+.+ ..+||++++ ++++|++....++.+.
T Consensus 336 ~~~~v~~d~~~~-~~~~~~~~~~-~p~aVvde~-~r~vG~i~~~~vl~aL 382 (386)
T COG4175 336 DVLTVDADTPLS-EILARIRQAP-CPVAVVDED-GRYVGIISRGELLEAL 382 (386)
T ss_pred cccccCccchHH-HHHHHHhcCC-CceeEEcCC-CcEEEEecHHHHHHHH
Confidence 677888899887 7777776655 468899875 8999999999998654
No 221
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=25.34 E-value=1.1e+02 Score=21.18 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHH
Q 010325 28 IPFGSVWWFVYAGISCVLVLFAGIM 52 (513)
Q Consensus 28 ~~~~s~~~~~~~~i~~~LlllsafF 52 (513)
.-.-|.+|.+.+ +.++-+++|..|
T Consensus 12 LNRTSLY~GLll-ifvl~vLFssyf 35 (37)
T PF02419_consen 12 LNRTSLYWGLLL-IFVLAVLFSSYF 35 (37)
T ss_dssp --CCHHHHHHHH-HHHHHHHHHHHH
T ss_pred hhHHhHHHHHHH-HHHHHHHhhhhh
Confidence 345688887643 333344455444
No 222
>COG3462 Predicted membrane protein [Function unknown]
Probab=24.60 E-value=2.6e+02 Score=24.41 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=12.4
Q ss_pred CCCCChhHHHHHHHhh
Q 010325 206 GGELTHDETTIISGAL 221 (513)
Q Consensus 206 ~g~L~~~E~~~I~~vl 221 (513)
.|+|++||.+.+.+-+
T Consensus 100 kGEItEEEY~r~~~~i 115 (117)
T COG3462 100 KGEITEEEYRRIIRTI 115 (117)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 5899999988766543
No 223
>PF15284 PAGK: Phage-encoded virulence factor
Probab=24.36 E-value=89 Score=24.27 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 010325 40 GISCVLVLFAGIMSGLTLGLMSL 62 (513)
Q Consensus 40 ~i~~~LlllsafFSg~E~Al~s~ 62 (513)
.+.+++++.++.||++.+|-=+.
T Consensus 8 fL~l~~~LsA~~FSasamAa~~~ 30 (61)
T PF15284_consen 8 FLALVFILSAAGFSASAMAADSS 30 (61)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhC
Confidence 45666778889999998775444
No 224
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=23.89 E-value=1.2e+02 Score=30.78 Aligned_cols=59 Identities=24% Similarity=0.245 Sum_probs=39.7
Q ss_pred cccccccccccCccEE--EEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 010325 224 TEKTAEEAMTPIESTF--SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (513)
Q Consensus 224 ~~~~V~dIMtPr~~vv--~v~~d~sl~~eal~~i~~~~~sr~PV~~~~~d~ivGiV~~kDLl~ 284 (513)
...++.+.|.+..... .+.....-. +++..+...+.+.+||++++ ++++|.++..+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVDED-GRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhh
Confidence 4556777776532210 111122223 66777888999999999875 89999999999874
No 225
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=21.27 E-value=5.3e+02 Score=23.18 Aligned_cols=9 Identities=11% Similarity=0.527 Sum_probs=4.0
Q ss_pred cHHHHHHHH
Q 010325 32 SVWWFVYAG 40 (513)
Q Consensus 32 s~~~~~~~~ 40 (513)
..-||+.++
T Consensus 20 a~GWwll~~ 28 (146)
T PF14316_consen 20 APGWWLLLA 28 (146)
T ss_pred cHHHHHHHH
Confidence 345554433
Done!