BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010326
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 162 CAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK 221
CAGCN I L ++ WH C +C C + + D FS +G+ Y K + ++ K
Sbjct: 9 CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSV-YCKEDFFKRFGTK 67
Query: 222 CDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGR 281
C CQ IP + +A F +C + C C R ++ ++DGR
Sbjct: 68 CTACQQGIPPTQ---VVRKAQDFVYHLHCFA--------CIICNRQLATGDEFYLMEDGR 116
Query: 282 KLCLECLDSA 291
+C E ++A
Sbjct: 117 LVCKEDYETA 126
>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 161 ICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHP 220
+CAGC+ I L ++ WH +C +C C++P+ + FS G Y K + ++
Sbjct: 62 MCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFGT 120
Query: 221 KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDG 280
KC CQ IP + RA F +C + C C+R ++ ++D
Sbjct: 121 KCAACQLGIPPTQ---VVRRAQDFVYHLHCFA--------CVVCKRQLATGDEFYLMEDS 169
Query: 281 RKLC 284
R +C
Sbjct: 170 RLVC 173
>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 161 ICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHP 220
+CAGC+ I L ++ WH +C +C C++P+ + FS G Y K + ++
Sbjct: 8 MCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFGT 66
Query: 221 KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDG 280
KC CQ IP + RA F +C + C C+R ++ ++D
Sbjct: 67 KCAACQLGIPPTQ---VVRRAQDFVYHLHCFA--------CVVCKRQLATGDEFYLMEDS 115
Query: 281 RKLC 284
R +C
Sbjct: 116 RLVC 119
>pdb|1X3H|A Chain A, Solution Structure Of The Lim Domain Of Human Leupaxin
Length = 80
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 162 CAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH 219
C GCN + YLS M+ WHPECF C C + F RP+ C HH
Sbjct: 18 CGGCNRPVLEN-YLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPF---CELHYHH 71
>pdb|2CUP|A Chain A, Solution Structure Of The Skeletal Muscle Lim-Protein 1
Length = 101
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 157 SGYRICAGCNTEIG-HGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYK 215
SG C C IG + + FWH CFRC C P+ + F N+ C
Sbjct: 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTT 62
Query: 216 EQHHPKCDVC 225
+ PKC C
Sbjct: 63 REDSPKCKGC 72
>pdb|2DJ7|A Chain A, Solution Structure Of 3rd Lim Domain Of Actin-Binding Lim
Protein 3
Length = 80
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 162 CAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ 217
CAGC EI HG+ L ++ WH CF+C +C++ +T S G PY + Y Q
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDG-VPYCESDYHAQ 72
>pdb|2L4Z|A Chain A, Nmr Structure Of Fusion Of Ctip (641-685) To Lmo4-Lim1
(18-82)
Length = 123
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 159 YRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDV 199
++ CAGC +I L M+++WH C +C SC + D+
Sbjct: 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDI 101
>pdb|2XQN|T Chain T, Complex Of The 2nd And 3rd Lim Domains Of Tes With The
Evh1 Domain Of Mena And The N-Terminal Domain Of
Actin-Like Protein Arp7a
Length = 126
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 162 CAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK 221
CAGC+ I Y WH + F C C+ + + M ++P K CY + H
Sbjct: 6 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVV 65
Query: 222 CDVCQNFI 229
C C N I
Sbjct: 66 CQGCHNAI 73
>pdb|1M3V|A Chain A, Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And The N-
Terminal Lim Domain Of Lmo4
Length = 122
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 159 YRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFS 202
++ CAGC +I L M+++WH C +C SC + D+ S
Sbjct: 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTS 48
>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 159 YRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFS 202
++ CAGC +I L M+++WH C +C SC + D+ S
Sbjct: 3 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTS 46
>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 159 YRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFS 202
++ CAGC +I L M+++WH C +C SC + D+ S
Sbjct: 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTS 48
>pdb|2D8X|A Chain A, Solution Structure Of The Second Lim Domain Of
Particularly Interesting New Cys-His Protein (Pinch)
Length = 70
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 172 GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ 217
GR + M WHPECFRC C + D+ F + R + C+ +
Sbjct: 17 GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62
>pdb|1J2O|A Chain A, Structure Of Flin2, A Complex Containing The N-Terminal
Lim Domain Of Lmo2 And Ldb1-Lid
Length = 114
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 162 CAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHK 211
C GC IG +L ++ +WH +C C C + +V G R Y+K
Sbjct: 6 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEV-----GRRLYYK 50
>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
Nmr, Minimized Structure
Length = 113
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYK 215
F G C+ C + + WH CFRC C + + Y K CY
Sbjct: 33 FGGAEKCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYA 92
Query: 216 EQHHPK 221
+ PK
Sbjct: 93 KNFGPK 98
>pdb|2XJY|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21
Crystal Form
pdb|2XJZ|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|C Chain C, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|D Chain D, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|E Chain E, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
Length = 131
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 162 CAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHK 211
C GC IG +L ++ +WH +C C C + +V G R Y+K
Sbjct: 5 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEV-----GRRLYYK 49
>pdb|1X4K|A Chain A, Solution Structure Of Lim Domain In Lim-Protein 3
Length = 72
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 157 SGYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYK 215
SG C C I G R + + WH CF CH C PI F N+ + CY+
Sbjct: 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYE 62
Query: 216 EQH 218
+QH
Sbjct: 63 KQH 65
>pdb|1IBI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, 15 Minimized
Model Structures
pdb|1QLI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized
Average Structure
Length = 113
Score = 35.8 bits (81), Expect = 0.064, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYK 215
F G C+ C + + WH CFRC C + + Y K CY
Sbjct: 33 FGGAEKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYA 92
Query: 216 EQHHPK 221
+ PK
Sbjct: 93 KNFGPK 98
>pdb|2CUR|A Chain A, Solution Structure Of Skeletal Muscle Lim-Protein 1
Length = 69
Score = 35.4 bits (80), Expect = 0.070, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYK 215
SG C CN I G ++ + WH +CF C +C+ + F+ ++ Y CYK
Sbjct: 3 SGSSGCVKCNKAITSGG-ITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYK 60
>pdb|1A7I|A Chain A, Amino-Terminal Lim Domain From Quail Cysteine And Glycine-
Rich Protein, Nmr, Minimized Average Structure
Length = 81
Score = 35.4 bits (80), Expect = 0.080, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 27/68 (39%)
Query: 154 PFFSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHC 213
P + G C C + H + C +H CF C C + ++ Y K C
Sbjct: 2 PNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSC 61
Query: 214 YKEQHHPK 221
Y +++ PK
Sbjct: 62 YGKKYGPK 69
>pdb|1X6A|A Chain A, Solution Structures Of The Second Lim Domain Of Human Lim-
Kinase 2 (limk2)
Length = 81
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 162 CAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD 198
C GC+ + G ++ E +HPECF C SC + I D
Sbjct: 18 CHGCSL-LMTGPFMVAGEFKYHPECFACMSCKVIIED 53
>pdb|1CTL|A Chain A, Structure Of The Carboxy-Terminal Lim Domain From The
Cysteine Rich Protein Crp
Length = 85
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 182 WHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK 221
WH CFRC C + + Y K CY + PK
Sbjct: 31 WHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPK 70
>pdb|2EGQ|A Chain A, Solution Structure Of The Fourth Lim Domain From Human
Four And A Half Lim Domains 1
Length = 77
Score = 32.7 bits (73), Expect = 0.44, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 162 CAGCNTEI---GHGRYLSCMEA-FWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKE 216
CAGC I G G + E WH CF C C++ + + F + Y C K+
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 182 WHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK 221
WH CFRC C + + Y K CY + PK
Sbjct: 138 WHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPK 177
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 154 PFFSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHC 213
P + G + C C + + C + +H CF C C + ++ G+ Y K C
Sbjct: 2 PNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSC 61
Query: 214 Y 214
Y
Sbjct: 62 Y 62
>pdb|1X68|A Chain A, Solution Structures Of The C-Terminal Lim Domain Of Human
Fhl5 Protein
Length = 76
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 157 SGYRICAGCNTEIGH---GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHC 213
SG C C+ I +++ ++ WH ECF C C++ + F + + C
Sbjct: 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKC 62
>pdb|2CUQ|A Chain A, Solution Structure Of Second Lim Domain From Human
Skeletal Muscle Lim-Protein 2
Length = 80
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 182 WHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKE 216
WH EC C C P+ +F+ PY C+ E
Sbjct: 37 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGE 71
>pdb|2D8Z|A Chain A, Solution Structure Of The Third Lim Domain Of Four And A
Half Lim Domains Protein 2 (Fhl-2)
Length = 70
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCY 214
SG C C I G ++ E WH ECF C +C ++ F+ + Y +C+
Sbjct: 3 SGSSGCVQCKKPITTGG-VTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCF 59
>pdb|2DAR|A Chain A, Solution Structure Of First Lim Domain Of Enigma-Like Pdz
And Lim Domains Protein
Length = 90
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 161 ICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKE 216
+CA CN I G +L + WHPE F C C + + F Y + CY++
Sbjct: 27 MCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEK 81
>pdb|2CU8|A Chain A, Solution Structure Of The Lim Domain Of Human
Cysteine-Rich Protein 2
Length = 76
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 162 CAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPY-HKHCY 214
C C+ + +S + WH C +C C+ +T + +P+ HK CY
Sbjct: 12 CPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCY 65
>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of
Horse Liver Alcohol Dehydrogenase In Complex With Nad
And Inhibitor Trifluoroethanol
pdb|1AXE|B Chain B, Crystal Structure Of The Active-Site Mutant Phe93->trp Of
Horse Liver Alcohol Dehydrogenase In Complex With Nad
And Inhibitor Trifluoroethanol
Length = 374
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 146 SGNIFQPFPFFSGYRICAGCNTEIGHG----RYLSCMEAFWHPECFRCHSCNLP 195
SG + P P +G+ AG IG G R + W P+C +C C P
Sbjct: 54 SGTLVTPLPVIAGHE-AAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHP 106
>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse
Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With
Nad And Trifluoroethanol
pdb|1A71|B Chain B, Ternary Complex Of An Active Site Double Mutant Of Horse
Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With
Nad And Trifluoroethanol
pdb|1A72|A Chain A, An Active-Site Double Mutant (Phe93->trp, Val203->ala) Of
Horse Liver Alcohol Dehydrogenase In Complex With The
Isosteric Nad Analog Cpad
Length = 374
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 146 SGNIFQPFPFFSGYRICAGCNTEIGHG----RYLSCMEAFWHPECFRCHSCNLP 195
SG + P P +G+ AG IG G R + W P+C +C C P
Sbjct: 54 SGTLVTPLPVIAGHE-AAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHP 106
>pdb|2O10|A Chain A, Solution Structure Of The N-Terminal Lim Domain Of MlpCRP3
Length = 60
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 162 CAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCY 214
C C + H + C +H CF C +C + + + Y K CY
Sbjct: 4 CGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCY 56
>pdb|1X4L|A Chain A, Solution Structure Of Lim Domain In Four And A Half Lim
Domains Protein 2
Length = 72
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 167 TEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHP 220
+ +G +Y+S E WH +CF C C+L + F + C K+ P
Sbjct: 16 SGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGP 69
>pdb|1V6G|A Chain A, Solution Structure Of The Lim Domain Of The Human Actin
Binding Lim Protein 2
Length = 81
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 162 CAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLP 195
C C+ I G +S + +HP+CF C C LP
Sbjct: 18 CFSCDQFI-EGEVVSALGKTYHPDCFVCAVCRLP 50
>pdb|2DLO|A Chain A, Solution Structure Of The Second Lim Domain Of Human
Thyroid Receptor-Interacting Protein 6
Length = 81
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 162 CAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH 218
CA C+ I R L M +HP CF C C+ + + F++ HC ++ H
Sbjct: 18 CATCSQPI-LDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATS--QIHCIEDFH 71
>pdb|1X64|A Chain A, Solution Structure Of The Lim Domain Of Alpha-Actinin-2
Associated Lim Protein
Length = 89
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 161 ICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNL 194
+C C + I G + + + HPECF C CNL
Sbjct: 27 LCDKCGSGIV-GAVVKARDKYRHPECFVCADCNL 59
>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures
Length = 76
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 162 CAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKH-CYKEQHHP 220
C C+ E+ ++ + WH C +C C +T + +PY H CY P
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGP 62
Query: 221 K 221
K
Sbjct: 63 K 63
>pdb|2HHJ|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate (15 Days)
pdb|2HHJ|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate (15 Days)
Length = 267
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 208 PYHKHCYKEQHHPKCDVCQNFIP-TNSAGLIEYRAHPFWLQKYCPSHERDGT 258
PY++ Y ++ + CDV + +P + S + R P+W ++ P R T
Sbjct: 131 PYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRGKT 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,473,779
Number of Sequences: 62578
Number of extensions: 566320
Number of successful extensions: 1283
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1232
Number of HSP's gapped (non-prelim): 65
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)