Query 010326
Match_columns 513
No_of_seqs 344 out of 1747
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 04:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jtn_A LIM domain-binding prot 99.9 5.5E-24 1.9E-28 200.9 10.6 124 156-291 57-180 (182)
2 2xqn_T Testin, TESS; metal-bin 99.9 5E-24 1.7E-28 189.1 7.7 121 158-291 2-124 (126)
3 2rgt_A Fusion of LIM/homeobox 99.9 3.7E-24 1.3E-28 199.8 6.6 125 158-294 5-129 (169)
4 2xjy_A Rhombotin-2; oncoprotei 99.9 5E-24 1.7E-28 190.2 6.5 121 159-291 2-126 (131)
5 1rut_X Flinc4, fusion protein 99.9 2.7E-23 9.3E-28 197.2 5.1 124 158-293 4-131 (188)
6 1b8t_A Protein (CRP1); LIM dom 99.9 9.1E-23 3.1E-27 194.1 6.4 132 157-304 5-184 (192)
7 2cup_A Skeletal muscle LIM-pro 99.8 1E-20 3.6E-25 161.3 8.2 98 157-265 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.7 8.2E-19 2.8E-23 155.4 3.5 107 158-292 4-114 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.7 4.8E-17 1.6E-21 142.3 6.6 102 158-291 2-105 (114)
10 2ehe_A Four and A half LIM dom 99.6 1.1E-15 3.7E-20 125.5 6.4 78 147-224 2-81 (82)
11 2dlo_A Thyroid receptor-intera 99.6 9.8E-16 3.4E-20 125.6 6.1 78 146-224 2-80 (81)
12 1iml_A CRIP, cysteine rich int 99.6 9E-16 3.1E-20 124.4 5.3 71 160-230 1-72 (76)
13 1a7i_A QCRP2 (LIM1); LIM domai 99.6 5.1E-16 1.8E-20 127.3 3.2 73 157-229 5-77 (81)
14 1x3h_A Leupaxin; paxillin fami 99.6 2.2E-15 7.6E-20 122.9 5.6 77 147-224 2-79 (80)
15 2cuq_A Four and A half LIM dom 99.6 3.2E-15 1.1E-19 122.0 6.0 77 147-224 2-79 (80)
16 2dar_A PDZ and LIM domain prot 99.5 5.3E-15 1.8E-19 123.8 6.3 68 156-224 22-89 (90)
17 2dj7_A Actin-binding LIM prote 99.5 4.9E-15 1.7E-19 121.8 5.7 68 156-224 12-79 (80)
18 1x68_A FHL5 protein; four-and- 99.5 6.4E-15 2.2E-19 119.4 5.8 69 158-226 4-75 (76)
19 1x63_A Skeletal muscle LIM-pro 99.5 1.1E-14 3.7E-19 119.4 6.3 77 147-223 2-80 (82)
20 2cu8_A Cysteine-rich protein 2 99.5 9.2E-15 3.2E-19 118.4 5.5 68 157-224 7-75 (76)
21 2cur_A Skeletal muscle LIM-pro 99.5 7.9E-15 2.7E-19 116.5 4.5 67 157-224 3-69 (69)
22 2d8z_A Four and A half LIM dom 99.5 1.2E-14 4E-19 115.7 4.8 66 158-224 4-69 (70)
23 2d8y_A Eplin protein; LIM doma 99.5 2.6E-14 8.7E-19 119.9 6.7 74 156-229 12-85 (91)
24 1wyh_A SLIM 2, skeletal muscle 99.5 1.3E-14 4.3E-19 116.0 4.6 67 158-224 4-71 (72)
25 1x4k_A Skeletal muscle LIM-pro 99.5 1.7E-14 5.6E-19 115.3 5.2 67 158-224 4-71 (72)
26 1x4l_A Skeletal muscle LIM-pro 99.5 2.4E-14 8.1E-19 114.6 5.0 66 157-222 3-71 (72)
27 1g47_A Pinch protein; LIM doma 99.5 2.1E-14 7.1E-19 116.2 4.6 67 157-223 9-76 (77)
28 1x64_A Alpha-actinin-2 associa 99.5 5.5E-14 1.9E-18 117.4 7.0 68 156-224 22-89 (89)
29 1x62_A C-terminal LIM domain p 99.5 1.8E-14 6.2E-19 117.7 3.8 67 156-223 12-78 (79)
30 1nyp_A Pinch protein; LIM doma 99.5 1.8E-14 6.2E-19 113.4 3.3 63 158-221 4-66 (66)
31 1x6a_A LIMK-2, LIM domain kina 99.4 5.9E-14 2E-18 114.8 5.0 77 147-224 2-81 (81)
32 2d8x_A Protein pinch; LIM doma 99.4 6E-14 2.1E-18 111.7 4.5 66 157-223 3-68 (70)
33 2cor_A Pinch protein; LIM doma 99.4 8.7E-14 3E-18 113.9 4.5 66 156-223 12-77 (79)
34 2co8_A NEDD9 interacting prote 99.4 3E-13 1E-17 111.5 6.9 68 156-223 12-81 (82)
35 2egq_A FHL1 protein; LIM domai 99.4 1.8E-13 6.3E-18 110.7 5.4 70 147-216 2-76 (77)
36 1x61_A Thyroid receptor intera 99.4 1.5E-13 5.2E-18 109.8 4.4 68 157-225 3-71 (72)
37 1x6a_A LIMK-2, LIM domain kina 99.4 2.5E-13 8.4E-18 111.1 5.1 75 205-292 1-75 (81)
38 2ehe_A Four and A half LIM dom 99.4 3.5E-13 1.2E-17 110.5 5.9 80 205-299 1-80 (82)
39 1b8t_A Protein (CRP1); LIM dom 99.4 1.8E-13 6.3E-18 129.8 4.5 74 157-230 113-186 (192)
40 2cuq_A Four and A half LIM dom 99.4 3.9E-13 1.3E-17 109.5 5.7 78 205-299 1-78 (80)
41 1wig_A KIAA1808 protein; LIM d 99.4 4.5E-13 1.6E-17 108.0 5.1 63 158-221 4-67 (73)
42 2dlo_A Thyroid receptor-intera 99.3 6.1E-13 2.1E-17 108.9 5.5 79 205-300 2-80 (81)
43 1x3h_A Leupaxin; paxillin fami 99.3 6.6E-13 2.3E-17 108.2 4.8 79 205-300 1-79 (80)
44 2l4z_A DNA endonuclease RBBP8, 99.3 9.5E-13 3.3E-17 116.9 6.0 64 156-219 58-123 (123)
45 3f6q_B LIM and senescent cell 99.3 6.9E-13 2.4E-17 105.3 4.1 63 157-219 9-72 (72)
46 2l3k_A Rhombotin-2, linker, LI 99.3 1.2E-12 4.2E-17 115.7 4.8 73 160-232 9-83 (123)
47 2egq_A FHL1 protein; LIM domai 99.3 1.4E-12 4.8E-17 105.5 4.3 73 205-290 1-76 (77)
48 1x63_A Skeletal muscle LIM-pro 99.3 2.8E-12 9.4E-17 105.0 5.5 79 205-298 1-79 (82)
49 2iyb_E Testin, TESS, TES; LIM 99.2 2.5E-12 8.7E-17 101.1 3.4 59 159-217 2-64 (65)
50 1v6g_A Actin binding LIM prote 99.2 5.4E-12 1.8E-16 103.2 5.4 72 147-219 2-75 (81)
51 1v6g_A Actin binding LIM prote 99.2 1.6E-11 5.4E-16 100.4 5.0 73 206-292 2-74 (81)
52 1rut_X Flinc4, fusion protein 99.0 2.8E-11 9.6E-16 114.4 0.9 82 146-227 53-139 (188)
53 2xjy_A Rhombotin-2; oncoprotei 99.0 2.3E-11 8E-16 107.9 -1.4 75 146-220 50-129 (131)
54 2xqn_T Testin, TESS; metal-bin 99.0 1E-10 3.4E-15 103.2 1.3 73 146-218 49-125 (126)
55 1x68_A FHL5 protein; four-and- 98.9 9.9E-10 3.4E-14 88.6 4.8 71 216-301 2-74 (76)
56 2dar_A PDZ and LIM domain prot 98.8 3.3E-09 1.1E-13 88.4 5.5 76 207-299 13-88 (90)
57 1wig_A KIAA1808 protein; LIM d 98.8 3.2E-09 1.1E-13 85.3 4.9 63 216-292 2-64 (73)
58 1m3v_A FLIN4, fusion of the LI 98.8 7E-10 2.4E-14 97.8 0.6 74 217-305 3-79 (122)
59 1x4k_A Skeletal muscle LIM-pro 98.8 4.7E-09 1.6E-13 83.4 4.8 69 216-299 2-70 (72)
60 2d8z_A Four and A half LIM dom 98.8 4.7E-09 1.6E-13 83.0 4.6 67 216-299 2-68 (70)
61 2cur_A Skeletal muscle LIM-pro 98.8 4.4E-09 1.5E-13 83.1 4.3 66 217-299 3-68 (69)
62 2l3k_A Rhombotin-2, linker, LI 98.8 2.9E-09 9.9E-14 93.9 3.4 75 214-302 1-77 (123)
63 1wyh_A SLIM 2, skeletal muscle 98.7 6E-09 2.1E-13 82.7 4.6 69 216-299 2-70 (72)
64 2rgt_A Fusion of LIM/homeobox 98.7 1.1E-09 3.6E-14 101.8 0.2 77 146-222 51-131 (169)
65 2jtn_A LIM domain-binding prot 98.7 5.8E-09 2E-13 97.9 5.2 84 205-305 43-129 (182)
66 2cup_A Skeletal muscle LIM-pro 98.7 4.5E-09 1.5E-13 88.9 4.0 74 217-305 3-76 (101)
67 1x4l_A Skeletal muscle LIM-pro 98.7 1.6E-08 5.6E-13 80.4 5.1 67 217-298 3-71 (72)
68 2cu8_A Cysteine-rich protein 2 98.7 2E-08 6.9E-13 80.8 5.0 68 216-299 6-74 (76)
69 3f6q_B LIM and senescent cell 98.6 1.1E-08 3.7E-13 80.8 3.3 65 214-291 6-70 (72)
70 1iml_A CRIP, cysteine rich int 98.6 1.6E-08 5.5E-13 81.4 4.2 68 220-303 1-69 (76)
71 1x61_A Thyroid receptor intera 98.6 2.5E-08 8.5E-13 79.2 5.0 63 217-292 3-65 (72)
72 1g47_A Pinch protein; LIM doma 98.6 1.9E-08 6.4E-13 80.9 4.0 68 217-299 9-76 (77)
73 1a7i_A QCRP2 (LIM1); LIM domai 98.6 1.3E-08 4.5E-13 82.9 2.9 70 218-303 6-75 (81)
74 1nyp_A Pinch protein; LIM doma 98.6 1.5E-08 5.1E-13 79.3 2.8 61 216-291 2-62 (66)
75 2cor_A Pinch protein; LIM doma 98.6 3.7E-08 1.3E-12 80.2 4.6 64 217-298 13-76 (79)
76 2dj7_A Actin-binding LIM prote 98.6 4.9E-08 1.7E-12 79.8 4.9 65 218-299 14-78 (80)
77 2iyb_E Testin, TESS, TES; LIM 98.5 2.8E-08 9.5E-13 77.8 2.9 60 218-290 1-63 (65)
78 1j2o_A FLIN2, fusion of rhombo 98.5 3E-08 1E-12 86.3 3.2 69 219-302 3-72 (114)
79 2l4z_A DNA endonuclease RBBP8, 98.5 3.7E-08 1.3E-12 87.2 3.6 63 216-291 58-121 (123)
80 2d8y_A Eplin protein; LIM doma 98.5 5.1E-08 1.8E-12 81.3 4.2 69 217-301 13-81 (91)
81 2d8x_A Protein pinch; LIM doma 98.5 6.1E-08 2.1E-12 76.6 4.4 60 218-292 4-63 (70)
82 1x64_A Alpha-actinin-2 associa 98.5 8.3E-08 2.8E-12 79.7 4.3 65 218-299 24-88 (89)
83 2co8_A NEDD9 interacting prote 98.4 2.3E-07 7.8E-12 76.0 5.7 61 219-292 15-76 (82)
84 1x62_A C-terminal LIM domain p 98.4 5.4E-08 1.9E-12 79.0 1.5 60 218-292 14-73 (79)
85 1zfo_A LAsp-1; LIM domain, zin 97.0 0.00018 6E-09 48.5 1.4 29 159-187 3-31 (31)
86 2d3g_P Ubiquitin interacting m 92.3 0.065 2.2E-06 34.1 1.9 23 40-62 2-24 (26)
87 1q0v_A Hydrophilic protein; ha 84.4 0.95 3.2E-05 36.9 4.1 18 39-56 9-26 (81)
88 4ap4_A E3 ubiquitin ligase RNF 83.5 0.21 7.1E-06 42.8 -0.2 104 187-305 8-123 (133)
89 3gge_A PDZ domain-containing p 81.6 0.21 7.3E-06 42.0 -0.8 33 363-395 43-75 (95)
90 1ujd_A KIAA0559 protein; PDZ d 79.8 0.18 6.1E-06 43.1 -2.0 37 366-402 67-103 (117)
91 2db5_A INAD-like protein; PDZ 79.2 0.16 5.4E-06 44.0 -2.5 43 366-411 72-115 (128)
92 1zfo_A LAsp-1; LIM domain, zin 75.8 0.9 3.1E-05 30.1 1.0 29 219-259 3-31 (31)
93 2awx_A Synapse associated prot 75.5 0.25 8.5E-06 41.1 -2.3 36 367-402 52-87 (105)
94 1v6b_A Harmonin isoform A1; st 74.8 0.24 8.3E-06 42.4 -2.6 42 366-410 61-106 (118)
95 3e17_A Tight junction protein 72.8 0.29 9.9E-06 39.6 -2.5 37 366-402 39-75 (88)
96 1r6j_A Syntenin 1; PDZ, membra 72.3 0.28 9.6E-06 39.9 -2.6 35 366-400 40-74 (82)
97 3soe_A Membrane-associated gua 72.1 0.34 1.2E-05 41.9 -2.3 40 363-402 46-87 (113)
98 2krg_A Na(+)/H(+) exchange reg 71.0 1.3 4.4E-05 42.3 1.3 18 366-383 50-67 (216)
99 2ejy_A 55 kDa erythrocyte memb 71.0 0.4 1.4E-05 40.0 -2.1 31 367-397 55-85 (97)
100 4e34_A Golgi-associated PDZ an 70.8 0.28 9.6E-06 39.1 -2.9 32 366-397 46-77 (87)
101 2ehr_A INAD-like protein; PDZ 70.0 0.44 1.5E-05 40.4 -2.1 37 366-402 68-104 (117)
102 1uju_A Scribble; PDZ domain, c 69.9 0.39 1.3E-05 40.3 -2.4 36 367-402 63-98 (111)
103 1v62_A KIAA1719 protein; struc 69.3 0.43 1.5E-05 40.7 -2.3 37 366-402 60-96 (117)
104 1m5z_A GRIP, AMPA receptor int 68.8 0.39 1.3E-05 38.6 -2.5 21 366-386 49-69 (91)
105 2lob_A Golgi-associated PDZ an 71.6 1 3.5E-05 38.2 0.0 37 365-401 70-106 (112)
106 1y7n_A Amyloid beta A4 precurs 68.0 0.42 1.4E-05 39.0 -2.5 34 366-399 48-81 (90)
107 2kv8_A RGS12, regulator of G-p 68.0 0.43 1.5E-05 37.7 -2.4 28 366-393 40-67 (83)
108 2vwr_A Ligand of NUMB protein 67.9 0.41 1.4E-05 38.9 -2.6 27 366-392 47-73 (95)
109 1wha_A KIAA0147 protein, scrib 67.8 0.54 1.9E-05 39.0 -1.9 36 367-402 57-92 (105)
110 3b76_A E3 ubiquitin-protein li 67.6 0.59 2E-05 40.2 -1.8 35 366-400 71-105 (118)
111 2dkr_A LIN-7 homolog B; LIN-7B 67.5 0.43 1.5E-05 38.5 -2.6 28 366-393 48-75 (93)
112 1d5g_A Human phosphatase HPTP1 67.3 0.48 1.6E-05 38.5 -2.3 36 367-402 52-87 (96)
113 2yt7_A Amyloid beta A4 precurs 67.2 0.49 1.7E-05 39.1 -2.3 38 365-402 54-93 (101)
114 2q3g_A PDZ and LIM domain prot 67.1 0.47 1.6E-05 38.0 -2.4 27 366-392 44-70 (89)
115 2jil_A GRIP1 protein, glutamat 67.1 0.43 1.5E-05 38.8 -2.6 36 367-402 51-86 (97)
116 2byg_A Channel associated prot 66.9 0.47 1.6E-05 40.5 -2.5 37 366-402 72-108 (117)
117 2vsp_A PDZ domain-containing p 66.5 0.54 1.9E-05 37.9 -2.1 37 366-402 44-80 (91)
118 3nfk_A Tyrosine-protein phosph 66.3 0.54 1.8E-05 39.0 -2.2 26 367-392 63-88 (107)
119 3egg_C Spinophilin; PP1, serin 66.3 0.54 1.8E-05 43.2 -2.4 37 365-401 128-164 (170)
120 2i1n_A Discs, large homolog 3; 66.1 0.47 1.6E-05 39.0 -2.6 36 367-402 53-88 (102)
121 2jik_A Synaptojanin-2 binding 66.1 0.48 1.6E-05 38.9 -2.5 33 367-399 56-88 (101)
122 3qik_A Phosphatidylinositol 3, 65.9 0.42 1.4E-05 40.6 -3.0 37 366-402 56-95 (101)
123 2eno_A Synaptojanin-2-binding 65.8 0.43 1.5E-05 40.7 -3.0 42 367-411 66-107 (120)
124 3axa_A Afadin, nectin-3, prote 65.6 0.53 1.8E-05 39.1 -2.4 37 366-402 56-92 (106)
125 2csj_A TJP2 protein; PDZ domai 65.5 0.55 1.9E-05 39.8 -2.3 37 366-402 62-98 (117)
126 1wf8_A Neurabin-I; PDZ domain, 65.5 0.5 1.7E-05 39.3 -2.6 36 367-402 59-94 (107)
127 1ujv_A Membrane associated gua 65.5 0.48 1.6E-05 39.0 -2.7 31 364-394 45-75 (96)
128 2he4_A Na(+)/H(+) exchange reg 65.4 0.57 2E-05 37.6 -2.2 31 367-397 46-76 (90)
129 1um7_A Synapse-associated prot 64.9 0.62 2.1E-05 38.9 -2.1 36 367-402 58-93 (113)
130 2g5m_B Neurabin-2; spinophilin 64.3 0.58 2E-05 39.3 -2.4 37 366-402 53-89 (113)
131 1uep_A Membrane associated gua 64.2 0.36 1.2E-05 40.0 -3.7 27 366-392 52-78 (103)
132 1v5l_A PDZ and LIM domain 3; a 64.1 0.6 2E-05 38.6 -2.3 38 365-402 45-82 (103)
133 3o46_A Maguk P55 subfamily mem 63.9 0.6 2E-05 37.8 -2.3 28 366-393 46-73 (93)
134 1n7t_A 99-MER peptide of densi 63.8 0.56 1.9E-05 38.7 -2.6 37 366-402 59-95 (103)
135 2i04_A Membrane-associated gua 63.8 0.64 2.2E-05 36.8 -2.1 26 367-392 44-69 (85)
136 2lva_A Ubiquitin carboxyl-term 67.3 1.5 5.1E-05 38.5 0.0 23 36-58 90-112 (129)
137 2daz_A INAD-like protein; PDZ 63.3 0.61 2.1E-05 40.0 -2.5 37 366-402 69-105 (124)
138 1mfg_A ERB-B2 interacting prot 62.9 0.59 2E-05 37.9 -2.6 37 366-402 51-87 (95)
139 2djt_A Unnamed protein product 62.8 0.62 2.1E-05 38.4 -2.5 24 367-390 57-80 (104)
140 3gsl_A Disks large homolog 4; 62.8 0.68 2.3E-05 42.0 -2.5 37 366-402 148-184 (196)
141 1n7e_A AMPA receptor interacti 62.6 0.64 2.2E-05 37.9 -2.4 27 367-393 49-75 (97)
142 2o2t_A Multiple PDZ domain pro 62.6 0.63 2.2E-05 39.3 -2.5 25 367-391 68-93 (117)
143 2d92_A INAD-like protein; PDZ 62.3 0.67 2.3E-05 38.7 -2.4 30 366-395 62-91 (108)
144 1kwa_A Hcask/LIN-2 protein; PD 62.3 1.3 4.3E-05 35.7 -0.6 30 365-394 42-71 (88)
145 1wfv_A Membrane associated gua 62.3 0.56 1.9E-05 38.5 -2.8 24 367-390 55-78 (103)
146 2dc2_A GOPC, golgi associated 62.1 0.55 1.9E-05 39.0 -2.9 37 366-402 53-89 (103)
147 4amh_A Disks large homolog 1; 61.9 0.7 2.4E-05 38.6 -2.3 23 366-388 50-72 (106)
148 2edz_A PDZ domain-containing p 61.9 1.1 3.6E-05 37.8 -1.2 37 366-402 55-91 (114)
149 2qg1_A Multiple PDZ domain pro 61.7 0.65 2.2E-05 37.3 -2.5 26 367-392 48-73 (92)
150 1ufx_A KIAA1526 protein; PDZ d 61.7 1.1 3.6E-05 37.4 -1.2 30 366-395 50-79 (103)
151 2koj_A Partitioning defective 61.5 0.66 2.3E-05 38.7 -2.6 28 367-394 58-85 (111)
152 1q7x_A PDZ2B domain of PTP-BAS 61.5 0.75 2.6E-05 38.2 -2.2 34 367-400 61-94 (108)
153 1qav_A Alpha-1 syntrophin (res 61.4 0.58 2E-05 37.6 -2.9 27 366-392 48-74 (90)
154 1wi4_A Synip, syntaxin binding 61.3 1.3 4.6E-05 37.1 -0.7 30 365-394 58-87 (109)
155 1ihj_A INAD; intermolecular di 61.1 0.68 2.3E-05 37.7 -2.5 25 367-391 56-80 (98)
156 1uew_A Membrane associated gua 61.0 0.73 2.5E-05 38.8 -2.4 36 365-400 60-95 (114)
157 2uzc_A Human pdlim5, PDZ and L 61.0 0.68 2.3E-05 36.9 -2.5 27 366-392 44-70 (88)
158 1rgw_A ZAsp protein; PDZ, cyph 60.9 0.7 2.4E-05 36.5 -2.4 26 366-391 42-67 (85)
159 1um1_A KIAA1849 protein, RSGI 60.7 1.1 3.6E-05 37.4 -1.4 20 367-386 55-74 (110)
160 2v90_A PDZ domain-containing p 60.6 0.62 2.1E-05 37.8 -2.8 35 366-400 47-81 (96)
161 2dlu_A INAD-like protein; PDZ 60.4 0.67 2.3E-05 38.8 -2.7 27 367-393 57-83 (111)
162 3i4w_A Disks large homolog 4; 60.3 0.65 2.2E-05 38.1 -2.8 36 367-402 54-89 (104)
163 3l4f_D SH3 and multiple ankyri 60.1 0.89 3E-05 39.7 -2.1 35 366-400 82-116 (132)
164 1vb7_A PDZ and LIM domain 2; P 59.8 0.77 2.6E-05 37.2 -2.4 27 366-392 47-73 (94)
165 2edv_A FERM and PDZ domain-con 59.7 0.78 2.7E-05 37.5 -2.4 25 365-389 46-70 (96)
166 2dm8_A INAD-like protein; PDZ 59.7 0.78 2.7E-05 38.6 -2.4 27 367-393 62-88 (116)
167 1jm7_B BARD1, BRCA1-associated 59.6 8.2 0.00028 32.5 4.1 45 187-231 23-67 (117)
168 1wi2_A Riken cDNA 2700099C19; 59.5 0.73 2.5E-05 38.2 -2.6 28 366-393 58-85 (104)
169 2q9v_A Membrane-associated gua 59.5 1.4 4.8E-05 35.1 -0.8 23 367-389 46-68 (90)
170 2ego_A General receptor for ph 59.4 0.82 2.8E-05 37.2 -2.3 30 366-395 54-83 (96)
171 1i16_A Interleukin 16, LCF; cy 58.8 1.6 5.5E-05 37.8 -0.6 31 366-396 75-105 (130)
172 3cbz_A Dishevelled-2; PDZ doma 58.7 1.5 5.2E-05 36.6 -0.8 30 366-395 51-80 (108)
173 2la8_A Inactivation-NO-after-p 58.4 0.78 2.7E-05 38.5 -2.6 27 366-392 43-69 (106)
174 2opg_A Multiple PDZ domain pro 58.3 0.84 2.9E-05 37.1 -2.4 23 367-389 49-71 (98)
175 2qkv_A Inactivation-NO-after-p 58.0 0.85 2.9E-05 37.3 -2.4 24 367-390 50-73 (96)
176 2r4h_A Membrane-associated gua 57.8 0.88 3E-05 38.3 -2.5 24 367-390 68-91 (112)
177 2kpk_A Membrane-associated gua 57.8 0.83 2.8E-05 39.5 -2.7 30 366-395 61-90 (129)
178 2pa1_A PDZ and LIM domain prot 57.8 0.85 2.9E-05 36.3 -2.4 27 366-392 43-69 (87)
179 1wfg_A Regulating synaptic mem 57.6 1.6 5.6E-05 37.9 -0.8 29 366-394 83-111 (131)
180 3kzd_A TIAM-1, T-lymphoma inva 57.6 1.7 5.9E-05 36.2 -0.6 28 366-393 52-79 (94)
181 3qe1_A Sorting nexin-27, G pro 57.3 0.94 3.2E-05 37.5 -2.3 35 366-400 60-94 (107)
182 2eeg_A PDZ and LIM domain prot 57.1 0.9 3.1E-05 36.8 -2.4 23 366-388 49-71 (94)
183 2yuy_A RHO GTPase activating p 56.8 0.76 2.6E-05 39.6 -3.1 37 366-402 78-114 (126)
184 2xq0_A LTA-4 hydrolase, leukot 56.6 3.6 0.00012 45.3 1.5 38 405-443 297-337 (632)
185 1ueq_A Membrane associated gua 56.5 0.96 3.3E-05 38.7 -2.5 29 366-394 62-90 (123)
186 1uhp_A Hypothetical protein KI 56.4 1 3.5E-05 37.4 -2.2 27 366-392 59-85 (107)
187 1q3o_A Shank1; PDZ, GKAP, pept 56.4 1 3.4E-05 37.6 -2.3 29 366-394 62-90 (109)
188 2fe5_A Presynaptic protein SAP 56.3 0.98 3.3E-05 36.3 -2.3 23 367-389 52-74 (94)
189 2iwq_A Multiple PDZ domain pro 56.1 1.1 3.8E-05 38.6 -2.1 28 367-394 78-105 (123)
190 2jre_A C60-1 PDZ domain peptid 55.8 0.74 2.5E-05 38.2 -3.2 23 367-389 63-85 (108)
191 4fgm_A Aminopeptidase N family 55.8 3.1 0.0001 45.6 0.8 41 403-443 267-320 (597)
192 1wg6_A Hypothetical protein (r 55.6 0.85 2.9E-05 39.5 -3.0 29 366-394 73-101 (127)
193 3r0h_A INAD, inactivation-NO-a 55.5 0.98 3.3E-05 41.6 -2.8 36 367-402 155-190 (206)
194 2ect_A Ring finger protein 126 55.5 5.8 0.0002 30.7 2.2 48 258-305 15-62 (78)
195 3cia_A Cold-active aminopeptid 55.2 3.7 0.00013 44.9 1.3 38 405-443 296-336 (605)
196 1nf3_C PAR-6B; semi-CRIB motif 55.0 1 3.5E-05 38.9 -2.5 31 367-397 84-114 (128)
197 3r68_A Na(+)/H(+) exchange reg 54.9 0.98 3.4E-05 36.4 -2.5 30 366-395 46-75 (95)
198 2ysl_A Tripartite motif-contai 54.9 6.9 0.00024 29.7 2.5 45 187-232 21-70 (73)
199 2iwo_A Multiple PDZ domain pro 54.8 1.2 4E-05 38.2 -2.2 27 366-392 71-97 (120)
200 2iwn_A Multiple PDZ domain pro 54.7 1 3.4E-05 36.3 -2.5 22 367-388 52-73 (97)
201 2e7k_A Maguk P55 subfamily mem 54.5 1.3 4.3E-05 35.9 -2.0 34 366-400 47-80 (91)
202 3ngh_A PDZ domain-containing p 54.2 1.1 3.9E-05 36.9 -2.3 37 366-402 43-79 (106)
203 2eei_A PDZ domain-containing p 54.1 0.89 3E-05 37.6 -3.0 26 366-391 49-74 (106)
204 2edp_A Fragment, shroom family 53.7 1.2 4E-05 36.7 -2.3 19 366-384 53-71 (100)
205 2f5y_A Regulator of G-protein 53.3 1.2 4.1E-05 35.8 -2.2 24 366-389 41-64 (91)
206 1t1h_A Gspef-atpub14, armadill 53.3 7.9 0.00027 29.9 2.7 47 184-231 6-55 (78)
207 2yub_A LIMK-2, LIM domain kina 53.2 1.3 4.4E-05 38.0 -2.2 35 366-400 63-97 (118)
208 2fcf_A Multiple PDZ domain pro 52.9 1.4 4.6E-05 36.2 -2.0 27 367-393 58-84 (103)
209 1wif_A RSGI RUH-020, riken cDN 52.9 1.7 5.9E-05 37.9 -1.4 37 366-402 67-105 (126)
210 2pkt_A PDZ and LIM domain prot 52.9 1.1 3.6E-05 36.0 -2.7 21 366-386 44-64 (91)
211 1q0v_A Hydrophilic protein; ha 52.7 6.7 0.00023 31.9 2.1 21 38-58 51-71 (81)
212 1v9x_A Poly (ADP-ribose) polym 52.6 3.2 0.00011 35.9 0.2 20 214-233 15-34 (114)
213 2kom_A Partitioning defective 52.6 1.2 4E-05 38.2 -2.6 27 367-393 77-103 (121)
214 1bor_A Transcription factor PM 52.3 15 0.00052 26.7 4.0 44 187-232 7-50 (56)
215 3khf_A Microtubule-associated 52.2 1.3 4.4E-05 36.1 -2.3 35 366-400 51-85 (99)
216 3tsv_A Tight junction protein 52.1 1.1 3.9E-05 38.6 -2.7 37 366-402 68-106 (124)
217 1g9o_A NHE-RF; PDZ domain, com 51.7 2.2 7.5E-05 34.0 -0.9 24 366-389 44-67 (91)
218 2djb_A Polycomb group ring fin 51.6 7.5 0.00026 29.7 2.3 46 187-232 16-63 (72)
219 2fne_A Multiple PDZ domain pro 51.5 1.5 5E-05 37.4 -2.1 27 366-392 71-97 (117)
220 1wf7_A Enigma homologue protei 51.1 1.2 4.1E-05 36.7 -2.6 23 366-388 46-68 (103)
221 2dmz_A INAD-like protein; PDZ 50.9 1.4 4.7E-05 37.9 -2.4 27 367-393 65-91 (129)
222 2d8i_A T-cell lymphoma invasio 50.5 2.7 9.4E-05 35.8 -0.5 26 366-391 61-86 (114)
223 2d90_A PDZ domain containing p 50.0 1.6 5.5E-05 35.8 -2.0 25 366-390 47-71 (102)
224 1v5q_A GRIP1 homolog, glutamat 49.8 1.1 3.9E-05 38.2 -3.1 26 367-392 64-89 (122)
225 2cs5_A Tyrosine-protein phosph 49.8 2.7 9.3E-05 35.4 -0.7 28 366-393 60-87 (119)
226 2rcz_A Tight junction protein 49.1 1.4 4.6E-05 34.1 -2.5 23 367-389 40-62 (81)
227 2jxo_A Ezrin-radixin-moesin-bi 49.0 2.6 8.9E-05 34.1 -0.9 27 366-392 50-76 (98)
228 2jny_A Uncharacterized BCR; st 48.9 3.6 0.00012 32.3 0.0 51 259-337 11-61 (67)
229 3suz_A Amyloid beta A4 precurs 48.8 3.6 0.00012 42.4 0.0 37 366-402 332-368 (388)
230 3k1r_A Harmonin; protein-prote 48.7 1.5 5E-05 40.6 -2.7 35 367-402 128-162 (192)
231 1va8_A Maguk P55 subfamily mem 48.6 1.5 5.3E-05 36.8 -2.4 25 368-392 68-92 (113)
232 1z87_A Alpha-1-syntrophin; pro 48.4 1.9 6.3E-05 42.6 -2.2 38 365-402 120-157 (263)
233 3u9w_A Leukotriene A-4 hydrola 47.8 5.3 0.00018 43.6 1.1 38 405-443 289-329 (608)
234 3cyy_A Tight junction protein 47.7 1.5 5.1E-05 35.0 -2.5 22 367-388 42-63 (92)
235 1uit_A Human discs large 5 pro 47.4 1.7 5.8E-05 36.6 -2.4 19 367-385 60-78 (117)
236 1x6d_A Interleukin-16; PDZ dom 47.2 2.5 8.4E-05 35.7 -1.3 23 367-389 61-83 (119)
237 1whd_A RGS3, regulator of G-pr 47.1 1.5 5.1E-05 36.0 -2.7 24 366-389 53-76 (100)
238 1x5q_A LAP4 protein; PDZ domai 47.0 1.7 5.8E-05 36.1 -2.4 21 366-386 63-83 (110)
239 2dmj_A Poly (ADP-ribose) polym 46.8 4.8 0.00016 34.2 0.4 21 214-234 20-40 (106)
240 4fke_A Aminopeptidase N; zinc 46.4 6.6 0.00023 45.0 1.6 40 403-443 316-358 (909)
241 2xdt_A Endoplasmic reticulum a 46.3 7.5 0.00026 44.5 2.1 42 402-444 301-345 (897)
242 2ecy_A TNF receptor-associated 45.8 7.5 0.00026 29.1 1.4 45 187-232 16-63 (66)
243 2eeh_A PDZ domain-containing p 45.8 1.7 5.9E-05 35.5 -2.5 21 366-386 53-73 (100)
244 3bpu_A Membrane-associated gua 45.8 3.1 0.00011 33.0 -0.9 27 366-392 42-68 (88)
245 1iym_A EL5; ring-H2 finger, ub 45.6 13 0.00044 26.5 2.6 45 259-303 6-51 (55)
246 2z17_A Pleckstrin homology SEC 44.9 1.6 5.5E-05 36.0 -2.8 28 367-394 66-93 (104)
247 2dls_A PDZ-rhogef, RHO guanine 44.6 1.9 6.6E-05 34.8 -2.3 21 366-386 46-66 (93)
248 1z5h_A Tricorn protease intera 44.4 7.4 0.00025 43.8 1.6 40 403-443 259-301 (780)
249 2kre_A Ubiquitin conjugation f 43.7 14 0.00047 30.7 2.8 48 184-232 27-76 (100)
250 3se6_A Endoplasmic reticulum a 43.4 9.7 0.00033 44.1 2.4 41 402-443 363-406 (967)
251 3hpk_A Protein interacting wit 43.3 3.3 0.00011 35.3 -1.2 21 366-386 63-83 (125)
252 2qt5_A Glutamate receptor-inte 42.7 2.2 7.6E-05 39.2 -2.5 36 367-402 154-189 (200)
253 1p1d_A PDZ45, glutamate recept 42.5 2.5 8.6E-05 38.8 -2.2 34 367-400 154-187 (196)
254 2ecv_A Tripartite motif-contai 42.4 15 0.0005 28.3 2.7 45 187-232 20-72 (85)
255 2w4f_A Protein LAP4; structura 41.9 2.1 7.3E-05 34.5 -2.5 20 366-385 51-70 (97)
256 2c2l_A CHIP, carboxy terminus 41.7 13 0.00043 35.5 2.6 47 185-232 207-256 (281)
257 1vae_A Rhophilin 2, rhophilin, 41.0 4.1 0.00014 34.4 -0.9 25 366-390 53-77 (111)
258 1wgm_A Ubiquitin conjugation f 40.2 15 0.00051 30.3 2.5 47 184-231 20-69 (98)
259 2y43_A E3 ubiquitin-protein li 40.1 9.8 0.00033 30.9 1.3 45 187-231 23-69 (99)
260 3sfj_A TAX1-binding protein 3; 39.3 4.5 0.00015 33.0 -0.9 27 366-392 62-88 (104)
261 2vsv_A Rhophilin-2; scaffold p 39.1 4.1 0.00014 34.4 -1.2 27 366-392 61-87 (109)
262 1uw0_A DNA ligase III; DNA rep 39.1 6.2 0.00021 34.1 -0.1 21 214-234 10-30 (117)
263 2kiz_A E3 ubiquitin-protein li 38.8 8.1 0.00028 29.1 0.5 48 258-305 14-61 (69)
264 2kr4_A Ubiquitin conjugation f 38.3 15 0.00053 29.3 2.2 47 184-231 12-60 (85)
265 3od8_A Poly [ADP-ribose] polym 38.0 5.6 0.00019 34.5 -0.5 20 214-233 33-52 (116)
266 3l11_A E3 ubiquitin-protein li 37.6 17 0.00057 30.3 2.4 29 187-216 16-44 (115)
267 2eaq_A LIM domain only protein 37.4 5 0.00017 31.8 -0.9 17 366-382 45-61 (90)
268 2f42_A STIP1 homology and U-bo 37.4 14 0.00047 34.3 2.0 48 184-232 104-154 (179)
269 2gzv_A PRKCA-binding protein; 37.2 5.3 0.00018 33.7 -0.8 27 367-393 69-95 (114)
270 3nw0_A Non-structural maintena 37.0 13 0.00044 35.9 1.8 51 158-232 179-230 (238)
271 2ep4_A Ring finger protein 24; 36.8 8.3 0.00028 29.4 0.3 47 259-305 16-62 (74)
272 2ecw_A Tripartite motif-contai 36.7 14 0.00049 28.4 1.7 45 187-232 20-72 (85)
273 1jm7_A BRCA1, breast cancer ty 36.7 15 0.00053 30.1 2.0 26 206-231 40-70 (112)
274 2d8t_A Dactylidin, ring finger 36.6 21 0.00072 27.0 2.7 44 187-231 16-61 (71)
275 1tp5_A Presynaptic density pro 36.5 2.7 9.3E-05 35.4 -2.8 19 367-385 57-75 (119)
276 2h2b_A Tight junction protein 36.1 2.9 0.0001 34.4 -2.6 19 366-384 55-73 (107)
277 2egp_A Tripartite motif-contai 35.6 15 0.00051 28.1 1.6 26 206-231 31-65 (79)
278 3cqb_A Probable protease HTPX 35.5 8 0.00027 32.5 0.1 13 403-415 83-95 (107)
279 1x5n_A Harmonin; PDZ domain, u 35.4 6.3 0.00022 32.8 -0.6 21 366-386 58-78 (114)
280 2i6v_A General secretion pathw 35.3 14 0.00049 29.1 1.6 18 366-383 36-53 (87)
281 2xkx_A Disks large homolog 4; 35.1 4.5 0.00015 45.1 -2.0 38 365-402 348-385 (721)
282 4ayc_A E3 ubiquitin-protein li 35.0 19 0.00066 31.1 2.5 26 206-231 72-99 (138)
283 2yur_A Retinoblastoma-binding 34.6 17 0.00059 27.8 1.9 44 187-231 16-64 (74)
284 1chc_A Equine herpes virus-1 r 34.5 24 0.00081 26.2 2.6 44 188-231 7-52 (68)
285 4ic3_A E3 ubiquitin-protein li 33.9 24 0.00082 27.2 2.6 41 188-231 26-67 (74)
286 2ckl_B Ubiquitin ligase protei 33.7 14 0.00047 33.0 1.3 45 187-231 55-102 (165)
287 2ckl_A Polycomb group ring fin 33.3 16 0.00054 30.2 1.5 44 187-231 16-62 (108)
288 2w15_A Zinc metalloproteinase 33.1 17 0.00057 33.7 1.8 26 390-415 123-148 (202)
289 2csy_A Zinc finger protein 183 32.9 16 0.00054 28.4 1.4 43 187-230 16-60 (81)
290 3vk6_A E3 ubiquitin-protein li 32.6 20 0.00067 30.4 2.0 43 189-231 4-49 (101)
291 2l0b_A E3 ubiquitin-protein li 32.6 12 0.00041 30.1 0.7 46 259-304 41-86 (91)
292 4dd8_A Disintegrin and metallo 32.3 17 0.00058 33.8 1.8 24 391-414 121-144 (208)
293 2vz5_A TAX1-binding protein 3; 32.3 7 0.00024 34.2 -0.9 25 367-391 82-106 (139)
294 2ct0_A Non-SMC element 1 homol 32.0 32 0.0011 27.1 3.1 16 156-171 12-27 (74)
295 2y43_A E3 ubiquitin-protein li 31.9 14 0.00049 29.9 1.0 45 259-305 23-67 (99)
296 2dmi_A Teashirt homolog 3; zin 31.6 21 0.00073 28.8 2.1 12 258-269 80-91 (115)
297 2ckl_A Polycomb group ring fin 31.6 16 0.00054 30.1 1.3 46 258-305 15-60 (108)
298 1atl_A Atrolysin C; metalloend 31.4 20 0.00067 33.2 2.0 26 390-415 123-148 (202)
299 2i4s_A General secretion pathw 31.1 18 0.00063 29.6 1.6 19 366-384 54-72 (105)
300 3ebh_A PFA-M1, M1 family amino 30.9 16 0.00055 41.9 1.6 41 403-444 295-338 (889)
301 2ecn_A Ring finger protein 141 30.7 13 0.00045 27.9 0.6 44 187-232 16-61 (70)
302 2gtq_A Aminopeptidase N; alani 30.5 12 0.00042 42.7 0.5 41 403-444 287-330 (867)
303 1wh1_A KIAA1095 protein; PDZ d 30.5 20 0.0007 30.2 1.8 17 367-383 67-83 (124)
304 2kjd_A Sodium/hydrogen exchang 30.5 7.8 0.00027 32.8 -0.9 24 367-390 51-74 (128)
305 2qbw_A PDZ-fibronectin fusion 30.5 5 0.00017 36.5 -2.3 22 366-387 40-61 (195)
306 3b34_A Aminopeptidase N; prote 30.2 14 0.00048 42.4 1.0 41 403-444 312-355 (891)
307 2ecm_A Ring finger and CHY zin 30.2 16 0.00056 25.8 1.0 45 259-303 6-51 (55)
308 1uez_A KIAA1526 protein; PDZ d 30.2 17 0.0006 29.3 1.3 20 366-385 52-71 (101)
309 2qt5_A Glutamate receptor-inte 29.7 4.7 0.00016 36.9 -2.6 24 366-389 51-74 (200)
310 4ayc_A E3 ubiquitin-protein li 29.7 19 0.00064 31.2 1.5 44 259-305 54-97 (138)
311 2kjp_A Uncharacterized protein 29.6 21 0.00071 28.8 1.6 18 366-383 17-34 (91)
312 1x4j_A Ring finger protein 38; 29.6 11 0.00036 29.0 -0.2 48 257-304 22-69 (75)
313 2ecg_A Baculoviral IAP repeat- 29.5 25 0.00086 27.0 2.1 41 188-231 27-68 (75)
314 1bud_A Protein (acutolysin A); 29.5 22 0.00076 32.6 2.0 26 390-415 120-145 (197)
315 1e4u_A Transcriptional repress 29.3 25 0.00085 27.8 2.0 46 187-232 12-63 (78)
316 2gvi_A Conserved hypothetical 29.3 11 0.00039 35.4 -0.0 14 203-216 189-202 (204)
317 2ct2_A Tripartite motif protei 29.2 19 0.00067 28.0 1.4 28 205-232 37-69 (88)
318 1qua_A Acutolysin-C, hemorrhag 29.0 23 0.00078 32.6 2.0 25 390-414 122-146 (197)
319 1jjd_A Metallothionein, SMTA; 28.9 21 0.00073 26.9 1.4 28 188-215 9-37 (55)
320 2jrp_A Putative cytoplasmic pr 28.8 30 0.001 28.1 2.4 12 221-232 53-64 (81)
321 2ct2_A Tripartite motif protei 28.7 13 0.00046 29.0 0.3 47 258-304 15-65 (88)
322 3fl2_A E3 ubiquitin-protein li 28.4 19 0.00066 30.4 1.3 26 206-231 71-99 (124)
323 1kuf_A Atrolysin E, metallopro 28.4 24 0.00081 32.7 2.0 25 391-415 126-150 (203)
324 3gsl_A Disks large homolog 4; 28.4 6 0.0002 35.6 -2.1 19 366-384 53-71 (196)
325 2ysm_A Myeloid/lymphoid or mix 28.1 62 0.0021 26.9 4.5 96 159-290 7-104 (111)
326 1yp1_A FII; FII hydrolase; 1.9 27.9 24 0.00083 32.6 2.0 26 390-415 122-147 (202)
327 2hf1_A Tetraacyldisaccharide-1 27.6 13 0.00044 29.2 0.0 40 259-326 9-48 (68)
328 2cs2_A Poly [ADP-ribose] polym 27.5 11 0.00037 33.5 -0.5 20 214-233 22-41 (134)
329 2ect_A Ring finger protein 126 27.3 47 0.0016 25.3 3.3 26 207-232 38-65 (78)
330 2dw0_A Catrocollastatin; apopt 27.0 23 0.00078 36.9 1.8 26 390-415 124-149 (419)
331 1qau_A Neuronal nitric oxide s 26.7 9.8 0.00033 31.4 -0.9 18 367-384 45-62 (112)
332 2ero_A VAP-1, vascular apoptos 26.7 22 0.00074 37.1 1.6 26 390-415 133-158 (427)
333 2ecn_A Ring finger protein 141 26.7 21 0.00073 26.7 1.2 44 258-305 15-58 (70)
334 2kl1_A YLBL protein; structure 26.6 26 0.00088 28.2 1.7 18 366-383 21-38 (94)
335 1t1h_A Gspef-atpub14, armadill 26.3 20 0.00069 27.4 1.0 45 258-305 8-53 (78)
336 2jr6_A UPF0434 protein NMA0874 26.0 14 0.00048 28.9 -0.0 41 258-326 8-48 (68)
337 1b8q_A Protein (neuronal nitri 26.0 8.3 0.00028 32.7 -1.5 23 368-390 53-75 (127)
338 3odc_A Poly [ADP-ribose] polym 26.0 9.8 0.00034 32.6 -1.0 20 214-233 14-33 (111)
339 2e3x_A Coagulation factor X-ac 26.0 23 0.00079 37.0 1.6 26 390-415 126-151 (427)
340 1uf1_A KIAA1526 protein; PDZ d 25.9 19 0.00063 30.6 0.7 21 366-386 63-83 (128)
341 2djb_A Polycomb group ring fin 25.8 13 0.00046 28.2 -0.2 46 258-305 15-60 (72)
342 2d8t_A Dactylidin, ring finger 25.8 20 0.00067 27.1 0.8 45 258-305 15-59 (71)
343 1p1d_A PDZ45, glutamate recept 25.6 6.4 0.00022 36.0 -2.5 18 367-384 55-72 (196)
344 3i18_A LMO2051 protein; alpha- 25.1 28 0.00096 28.2 1.7 18 366-383 23-40 (100)
345 1rmd_A RAG1; V(D)J recombinati 25.1 30 0.001 28.8 1.9 45 187-232 24-71 (116)
346 3lrq_A E3 ubiquitin-protein li 25.0 20 0.00068 29.3 0.7 46 187-232 23-71 (100)
347 3r0h_A INAD, inactivation-NO-a 24.8 11 0.00039 34.3 -0.9 18 366-383 63-80 (206)
348 3hcs_A TNF receptor-associated 24.7 29 0.001 30.9 1.8 45 187-232 19-66 (170)
349 1z6u_A NP95-like ring finger p 24.5 26 0.00088 31.1 1.4 27 206-232 97-126 (150)
350 2zpm_A Regulator of sigma E pr 24.3 28 0.00096 27.3 1.5 18 366-383 21-38 (91)
351 2ckl_B Ubiquitin ligase protei 23.9 19 0.00065 32.1 0.4 45 259-305 55-100 (165)
352 1g25_A CDK-activating kinase a 23.3 30 0.001 25.5 1.4 47 187-233 4-57 (65)
353 3id1_A Regulator of sigma E pr 23.2 30 0.001 27.9 1.5 18 366-383 19-36 (95)
354 3shw_A Tight junction protein 22.7 7.4 0.00025 41.4 -3.0 19 366-384 40-58 (468)
355 3b8z_A Protein adamts-5; alpha 22.6 29 0.001 32.3 1.5 21 391-414 132-152 (217)
356 2cs3_A Protein C14ORF4, MY039 22.5 47 0.0016 27.0 2.4 33 158-190 14-46 (93)
357 2v4b_A Adamts-1; zymogen, prot 21.6 32 0.0011 33.7 1.6 23 390-415 133-155 (300)
358 3hct_A TNF receptor-associated 21.6 31 0.0011 28.9 1.3 45 187-232 19-66 (118)
359 2csy_A Zinc finger protein 183 21.4 22 0.00076 27.5 0.3 45 258-305 15-59 (81)
360 3oue_A Cytochrome C family pro 21.4 26 0.00087 31.8 0.7 90 208-302 56-156 (158)
361 4ap4_A E3 ubiquitin ligase RNF 21.3 58 0.002 27.0 3.0 70 160-232 49-126 (133)
362 2yho_A E3 ubiquitin-protein li 21.0 50 0.0017 25.9 2.3 41 188-231 20-61 (79)
363 2rr9_C Putative uncharacterize 20.8 1.7E+02 0.0058 20.8 4.6 20 120-139 24-43 (46)
364 3c37_A Peptidase, M48 family; 20.8 25 0.00084 33.9 0.5 24 391-414 83-111 (253)
365 3tsz_A Tight junction protein 20.8 9.4 0.00032 39.5 -2.6 18 366-383 48-65 (391)
366 2ee8_A Protein ODD-skipped-rel 20.7 29 0.00099 27.4 0.9 11 258-268 73-83 (106)
367 3ztg_A E3 ubiquitin-protein li 20.5 20 0.00068 28.4 -0.2 42 187-229 14-60 (92)
368 3ov0_A Cytochrome C family pro 20.5 39 0.0013 33.8 2.0 114 181-302 182-316 (318)
369 2ea6_A Ring finger protein 4; 20.3 15 0.00051 27.2 -0.9 47 258-304 15-65 (69)
370 2pzd_A Serine protease HTRA2; 20.2 37 0.0013 27.8 1.5 18 366-383 52-69 (113)
No 1
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.90 E-value=5.5e-24 Score=200.87 Aligned_cols=124 Identities=23% Similarity=0.542 Sum_probs=108.2
Q ss_pred CCCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCCcCCCCcc
Q 010326 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 235 (513)
Q Consensus 156 ~~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~C~~~I~~~~~g 235 (513)
....++|.+|+++|....++.++++.||+.||+|..|+++|.+..| .++|+|||+.||.++|+++|.+|+++|.+.. .
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~-~ 134 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-V 134 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSC-C
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCc-e
Confidence 4567899999999986667899999999999999999999998876 5899999999999999999999999998753 2
Q ss_pred ceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCccccccccccc
Q 010326 236 LIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 291 (513)
Q Consensus 236 ~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~ 291 (513)
++.+.+. +||..||+|..|++.|..|..|+...+|++||..||.++
T Consensus 135 v~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 135 VRRAQDF----------VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp CCEETTE----------ECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred EEecCCC----------CEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 3344443 469999999999999987888888889999999999874
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.89 E-value=5e-24 Score=189.12 Aligned_cols=121 Identities=22% Similarity=0.480 Sum_probs=106.6
Q ss_pred CCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCCcCCCCccce
Q 010326 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 237 (513)
Q Consensus 158 g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~C~~~I~~~~~g~i 237 (513)
..++|++|+++|..+.++.++++.||+.||+|..|+++|.+..|+.++|+|||+.||.++|+++|.+|+++|.+.. ..|
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~ 80 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEV-QRV 80 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTS-CEE
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCc-eEE
Confidence 4579999999998788999999999999999999999999888999999999999999999999999999999743 356
Q ss_pred eeecccccccccCCCccc--CCCCccCCCCCcCCCCCceEEccCCccccccccccc
Q 010326 238 EYRAHPFWLQKYCPSHER--DGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 291 (513)
Q Consensus 238 ~~~~hpfw~~~yCp~H~H--~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~ 291 (513)
.+.++. || +.||+|..|++.|. +..|+. .+|++||..++.+.
T Consensus 81 ~a~~~~----------~H~~~~CF~C~~C~~~l~-~~~f~~-~~~~~yC~~~~~~~ 124 (126)
T 2xqn_T 81 TYNNFS----------WHASTECFLCSCCSKCLI-GQKFMP-VEGMVFCSVECKKR 124 (126)
T ss_dssp EETTEE----------EESSTTTSBCTTTCCBCT-TSEEEE-ETTEEESSHHHHHS
T ss_pred ECCCCE----------eeCCCCCcCcCCCCCccC-CCeeEe-ECCEEcchHHhhhh
Confidence 676665 48 99999999999996 777765 48999999777663
No 3
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.89 E-value=3.7e-24 Score=199.79 Aligned_cols=125 Identities=23% Similarity=0.535 Sum_probs=107.7
Q ss_pred CCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCCcCCCCccce
Q 010326 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 237 (513)
Q Consensus 158 g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~C~~~I~~~~~g~i 237 (513)
+.++|.+|+++|....++.++++.||+.||+|..|+.+|.+..| .++|++||+.||.++|+++|.+|+++|.+.. .++
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~-~v~ 82 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-VVR 82 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCTTS-EEE
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCCCc-EEE
Confidence 46799999999986667899999999999999999999998776 6899999999999999999999999998753 223
Q ss_pred eeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccccC
Q 010326 238 EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMD 294 (513)
Q Consensus 238 ~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~ 294 (513)
.+.+. +||..||+|..|++.|..|+.|+...+|++||..||.++++.
T Consensus 83 ~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 83 RAQDF----------VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQG 129 (169)
T ss_dssp EETTE----------EEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHC
T ss_pred EcCCc----------eEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhc
Confidence 44444 459999999999999987888888889999999999987653
No 4
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.89 E-value=5e-24 Score=190.16 Aligned_cols=121 Identities=17% Similarity=0.460 Sum_probs=105.9
Q ss_pred CCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCC--cceeecCCccccccccccccCc--ccccCCCCcCCCCc
Q 010326 159 YRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNSA 234 (513)
Q Consensus 159 ~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~--~~F~~~dG~pYCk~CY~~~f~p--kC~~C~~~I~~~~~ 234 (513)
.++|++|+++|..+.++.++++.||+.||+|..|+.+|.. ..|+.++|+|||+.||.++|++ +|.+|+++|.+.+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e- 80 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE- 80 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS-
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc-
Confidence 4689999999976567999999999999999999999963 6788899999999999999999 9999999998743
Q ss_pred cceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCccccccccccc
Q 010326 235 GLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 291 (513)
Q Consensus 235 g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~ 291 (513)
.++.+.++. ||+.||+|..|++.|+.+.+|+.. ++++||..||.+.
T Consensus 81 ~~~~a~~~~----------~H~~CF~C~~C~~~L~~g~~f~~~-~~~~~C~~c~~~~ 126 (131)
T 2xjy_A 81 MTMRVKDKV----------YHLECFKCAACQKHFCVGDRYLLI-NSDIVCEQDIYEW 126 (131)
T ss_dssp EEEEETTEE----------EEGGGCBCTTTCCBCCTTCEEEEE-TTEEEEGGGHHHH
T ss_pred eeEeeCCce----------ECccCcccCCCCCCCCCCCEEEEE-CCEEEcHHHHHHH
Confidence 345666665 489999999999999778888866 7999999999874
No 5
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.87 E-value=2.7e-23 Score=197.22 Aligned_cols=124 Identities=19% Similarity=0.489 Sum_probs=107.3
Q ss_pred CCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCC--cceeecCCccccccccccccCc--ccccCCCCcCCCC
Q 010326 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNS 233 (513)
Q Consensus 158 g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~--~~F~~~dG~pYCk~CY~~~f~p--kC~~C~~~I~~~~ 233 (513)
..++|++|+++|....++.++++.||+.||+|..|+.+|.. ..|+.++|++||+.||.++|++ +|.+|+++|.+.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc
Confidence 45799999999976567999999999999999999999985 6788899999999999999999 7999999998743
Q ss_pred ccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCccccccccccccc
Q 010326 234 AGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 293 (513)
Q Consensus 234 ~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~ 293 (513)
.++.+.++. ||..||+|..|++.|..+..|+.. ++++||..||.+.+.
T Consensus 84 -~~i~a~~~~----------~H~~CF~C~~C~~~L~~g~~f~~~-~g~~yC~~c~~~~~~ 131 (188)
T 1rut_X 84 -LVMRAQGNV----------YHLKCFTCSTCRNRLVPGDRFHYI-NGSLFCEHDRPTALI 131 (188)
T ss_dssp -EEEEETTEE----------ECGGGCBCTTTCCBCCTTCEEEEE-TTEEEEGGGCCTTTC
T ss_pred -EEEEcCCCE----------EeCCCCeECCCCCCCCCCCeEEEE-CCeEECHHHHHHHhc
Confidence 245566654 489999999999999777888755 789999999998653
No 6
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.86 E-value=9.1e-23 Score=194.10 Aligned_cols=132 Identities=20% Similarity=0.418 Sum_probs=112.5
Q ss_pred CCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcc---------------
Q 010326 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK--------------- 221 (513)
Q Consensus 157 ~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pk--------------- 221 (513)
.+.++|.+|+++|..++.+.++++.||+.||+|..|+.+|.+..|+.++|++||+.||.++|+++
T Consensus 5 ~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~ 84 (192)
T 1b8t_A 5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDK 84 (192)
T ss_dssp CCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCC
T ss_pred CCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCC
Confidence 35689999999998788899999999999999999999999988999999999999999999887
Q ss_pred ---------------------------------cccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcC
Q 010326 222 ---------------------------------CDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERME 268 (513)
Q Consensus 222 ---------------------------------C~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l 268 (513)
|..|+++|.... .+.+.+. +||..||+|..|++.|
T Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L 152 (192)
T 1b8t_A 85 GESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE--KVIGAGK----------SWHKSCFRCAKCGKSL 152 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSS--CEEETTE----------EECTTTCBCTTTCCBC
T ss_pred CcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcE--EEecCCC----------ccchhcCCccccCCCC
Confidence 667778887543 3445444 4599999999999999
Q ss_pred CCCCceEEccCCcccccccccccccCCCCCcccchH
Q 010326 269 PRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLE 304 (513)
Q Consensus 269 ~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~ 304 (513)
.. ..|+ ..+|++||..||.+ ++.++|..|.+.
T Consensus 153 ~~-~~~~-~~~g~~yC~~cy~~--~f~~kc~~C~~~ 184 (192)
T 1b8t_A 153 ES-TTLA-DKDGEIYCKGCYAK--NFGPKGFGFGQG 184 (192)
T ss_dssp CS-SSEE-EETTEEEEHHHHHH--HTCCCCCCCCCC
T ss_pred CC-Cccc-ccCCEEeCHHHHHH--hcCCcCCCCCCc
Confidence 64 4676 55899999999998 458999999854
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.82 E-value=1e-20 Score=161.29 Aligned_cols=98 Identities=27% Similarity=0.563 Sum_probs=87.2
Q ss_pred CCCCcCcCCCccccc-CceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCCcCCCCcc
Q 010326 157 SGYRICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 235 (513)
Q Consensus 157 ~g~~~C~~C~~~I~~-g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~C~~~I~~~~~g 235 (513)
.+.++|.+|+++|.. +.++.++++.||+.||+|..|+++|.+..|+.++|++||+.||.++|+++|.+|+++|.+++ .
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~ 81 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGD-Q 81 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSS-C
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCC-e
Confidence 356899999999975 78999999999999999999999999888999999999999999999999999999999542 2
Q ss_pred ceeeecccccccccCCCcccCCCCccCCCC
Q 010326 236 LIEYRAHPFWLQKYCPSHERDGTPRCCSCE 265 (513)
Q Consensus 236 ~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~ 265 (513)
+|.+.+.. ||+.||+|..|+
T Consensus 82 ~~~a~~~~----------~H~~CF~C~~C~ 101 (101)
T 2cup_A 82 NVEYKGTV----------WHKDCFSGPSSG 101 (101)
T ss_dssp EEESSSCE----------EETTTCCCTTCC
T ss_pred EEEeCCcc----------hHHhCCCCCCCC
Confidence 56666665 499999999996
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=8.2e-19 Score=155.38 Aligned_cols=107 Identities=15% Similarity=0.286 Sum_probs=89.0
Q ss_pred CCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCC--CcceeecCCccccccccccccCc--ccccCCCCcCCCC
Q 010326 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPIT--DVEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNS 233 (513)
Q Consensus 158 g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~--~~~F~~~dG~pYCk~CY~~~f~p--kC~~C~~~I~~~~ 233 (513)
..++|++|+++|..+.++.++++.||+.||+|..|+.+|. +..|+.++|+|||+.||.++|++ +|.+|+++|.+..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 4679999999997666799999999999999999999997 35788899999999999999999 9999999999753
Q ss_pred ccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccc
Q 010326 234 AGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (513)
Q Consensus 234 ~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v 292 (513)
+++.+. ..+ .|++|+. .++++||..|+.+..
T Consensus 84 ---~~~~g~-----------------------~~l-~g~~f~~-~~~~~yC~~~~~~~~ 114 (122)
T 1m3v_A 84 ---VMVVGE-----------------------PTL-MGGEFGD-EDERLITRLENTQFD 114 (122)
T ss_dssp ---SSSSSS-----------------------SSC-CSCTTCC-TTCCCCEECTTTTTT
T ss_pred ---eEEcCC-----------------------cCC-CCCccEe-cCCEeEccCcchhch
Confidence 222221 123 4778864 578999999998754
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4.8e-17 Score=142.32 Aligned_cols=102 Identities=15% Similarity=0.346 Sum_probs=84.3
Q ss_pred CCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCC--cceeecCCccccccccccccCcccccCCCCcCCCCcc
Q 010326 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 235 (513)
Q Consensus 158 g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~--~~F~~~dG~pYCk~CY~~~f~pkC~~C~~~I~~~~~g 235 (513)
+.++|.+|+++|....++.++++.||+.||+|..|+.+|.+ ..|+.++|+|||+.||.++|+++|..|.. +.
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~~--- 75 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---GD--- 75 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---CS---
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---Cc---
Confidence 45789999999986668999999999999999999999985 57888999999999999999999998862 11
Q ss_pred ceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCccccccccccc
Q 010326 236 LIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 291 (513)
Q Consensus 236 ~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~ 291 (513)
+| . |.+.+..|++|+ +.++++||..|+.+.
T Consensus 76 ~~----------------------~---~~~~~~~g~~f~-~~~~~~~C~~~~~~~ 105 (114)
T 1j2o_A 76 VM----------------------V---VGEPTLMGGEFG-DEDERLITRLENTQF 105 (114)
T ss_dssp CC----------------------C---SSCSSTTSSBCC-CSSSCCCEEEECTTC
T ss_pred ee----------------------E---cCCccCCCCeeE-EcCCEeecchhhhcc
Confidence 11 1 335544688886 558899999999874
No 10
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=125.54 Aligned_cols=78 Identities=23% Similarity=0.428 Sum_probs=71.8
Q ss_pred CCcCCCCCC-CCCCCcCcCCCccccc-CceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010326 147 GNIFQPFPF-FSGYRICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (513)
Q Consensus 147 gsv~~p~~~-~~g~~~C~~C~~~I~~-g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~ 224 (513)
|++||..++ ....++|++|+++|.. +.++.++++.||+.||+|..|+++|.+..|+.++++|||+.||.++|+++|++
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred CceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 678999888 6677899999999973 68899999999999999999999999988999999999999999999999974
No 11
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=9.8e-16 Score=125.61 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=71.5
Q ss_pred CCCcCCCCCCCCCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeec-CCccccccccccccCccccc
Q 010326 146 SGNIFQPFPFFSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQHHPKCDV 224 (513)
Q Consensus 146 ~gsv~~p~~~~~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~-dG~pYCk~CY~~~f~pkC~~ 224 (513)
.|++||..++....++|++|+++|. +++|.++++.||+.||+|..|+++|.+..|... +|+|||+.||.++|+|+|++
T Consensus 2 ~g~~yC~~~y~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 2 SSGSSGEGCYVATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CCCCCCCCCCCSSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred cCCEECHHHhhcCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 5788999988778899999999996 789999999999999999999999998888765 79999999999999999974
No 12
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=9e-16 Score=124.35 Aligned_cols=71 Identities=21% Similarity=0.506 Sum_probs=66.2
Q ss_pred CcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccc-cccccccCcccccCCCCcC
Q 010326 160 RICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHK-HCYKEQHHPKCDVCQNFIP 230 (513)
Q Consensus 160 ~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk-~CY~~~f~pkC~~C~~~I~ 230 (513)
|+|.+|+++|..++.+.++++.||+.||+|..|+.+|.+..|+.++|++||+ .||.++|+++|.+|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 5899999999878999999999999999999999999988898999999999 6999999999999996654
No 13
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.58 E-value=5.1e-16 Score=127.32 Aligned_cols=73 Identities=22% Similarity=0.470 Sum_probs=57.9
Q ss_pred CCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCCc
Q 010326 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFI 229 (513)
Q Consensus 157 ~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~C~~~I 229 (513)
.+.++|.+|+++|..+..+.++++.||+.||+|..|+++|....|+.+++++||+.||.++|+++|.+|++..
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 4568999999999878899999999999999999999999988888999999999999999999999998764
No 14
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=2.2e-15 Score=122.95 Aligned_cols=77 Identities=27% Similarity=0.523 Sum_probs=70.7
Q ss_pred CCcCCCCCC-CCCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010326 147 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (513)
Q Consensus 147 gsv~~p~~~-~~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~ 224 (513)
|++||..++ ....++|++|+++|. +++|.++++.||+.||+|..|+++|.+..|+.++++|||+.||.++|+++|.+
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 2 SSGSSGKDFLAMFSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CCccchhHHhhhcCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 678999888 566789999999996 58899999999999999999999999888889999999999999999999974
No 15
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3.2e-15 Score=122.03 Aligned_cols=77 Identities=19% Similarity=0.424 Sum_probs=70.8
Q ss_pred CCcCCCCCC-CCCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010326 147 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (513)
Q Consensus 147 gsv~~p~~~-~~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~ 224 (513)
|++||..++ ....++|.+|+++|. +++|.++++.||+.||+|..|+++|.+..|+.++++|||+.||.++|+++|..
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 678999888 567799999999996 56899999999999999999999999888999999999999999999999974
No 16
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=5.3e-15 Score=123.84 Aligned_cols=68 Identities=26% Similarity=0.568 Sum_probs=63.4
Q ss_pred CCCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010326 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (513)
Q Consensus 156 ~~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~ 224 (513)
....++|.+|+++| .+++|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|+|..
T Consensus 22 ~~~~~~C~~C~~~I-~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 22 GKRTPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp TTCCCBBSSSCCBC-CSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCCCccCCCEe-cceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 45678999999999 588999999999999999999999999888999999999999999999999974
No 17
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=4.9e-15 Score=121.83 Aligned_cols=68 Identities=32% Similarity=0.738 Sum_probs=62.6
Q ss_pred CCCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010326 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (513)
Q Consensus 156 ~~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~ 224 (513)
..+.++|.+|+++|..+++|.++++.||+.||+|..|+.+|.+ .|+.++++|||+.||.++|+++|.+
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 3467899999999988899999999999999999999999986 5788999999999999999999974
No 18
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=6.4e-15 Score=119.43 Aligned_cols=69 Identities=19% Similarity=0.566 Sum_probs=63.9
Q ss_pred CCCcCcCCCccccc---CceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCC
Q 010326 158 GYRICAGCNTEIGH---GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQ 226 (513)
Q Consensus 158 g~~~C~~C~~~I~~---g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~C~ 226 (513)
..++|.+|+++|.. ..++.++++.||+.||+|..|+.+|.+..|+.++++|||+.||.++|+++|..+.
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 45799999999973 3889999999999999999999999988899999999999999999999999875
No 19
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=1.1e-14 Score=119.43 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=70.3
Q ss_pred CCcCCCCCC-CCCCCcCcCCCcccccC-ceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 010326 147 GNIFQPFPF-FSGYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (513)
Q Consensus 147 gsv~~p~~~-~~g~~~C~~C~~~I~~g-~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~ 223 (513)
+++||..++ ....++|.+|+++|..+ .+|.++++.||+.||+|..|+++|....|+.+++++||+.||.++|+++|.
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 578999888 56678999999999764 679999999999999999999999988899999999999999999999986
No 20
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=9.2e-15 Score=118.37 Aligned_cols=68 Identities=18% Similarity=0.465 Sum_probs=63.3
Q ss_pred CCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccc-cccccccCccccc
Q 010326 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHK-HCYKEQHHPKCDV 224 (513)
Q Consensus 157 ~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk-~CY~~~f~pkC~~ 224 (513)
...++|.+|+++|..++.|.++++.||+.||+|..|+++|.+..|+.++++|||+ .||.++|+|+|.+
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 4568999999999878999999999999999999999999988888999999999 7999999999974
No 21
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=7.9e-15 Score=116.49 Aligned_cols=67 Identities=25% Similarity=0.579 Sum_probs=62.1
Q ss_pred CCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010326 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (513)
Q Consensus 157 ~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~ 224 (513)
.+.++|.+|+++|. ++.|.++++.||+.||+|..|+.+|.+..|+.+++++||+.||.++|+++|.+
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 35679999999995 67899999999999999999999999888999999999999999999999974
No 22
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.2e-14 Score=115.71 Aligned_cols=66 Identities=23% Similarity=0.531 Sum_probs=61.4
Q ss_pred CCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010326 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (513)
Q Consensus 158 g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~ 224 (513)
+.++|.+|+++|. ++.+.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|.+
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 4 GSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 5679999999996 67799999999999999999999999888999999999999999999999974
No 23
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=2.6e-14 Score=119.89 Aligned_cols=74 Identities=20% Similarity=0.382 Sum_probs=66.7
Q ss_pred CCCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCCc
Q 010326 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFI 229 (513)
Q Consensus 156 ~~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~C~~~I 229 (513)
..+.+.|.+|+++|..++.|.++++.||+.||+|..|+.+|....|+..++++||+.||.++|+++|..+..+.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g 85 (91)
T 2d8y_A 12 APARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFG 85 (91)
T ss_dssp SSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCC
T ss_pred CCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcC
Confidence 34678999999999877889999999999999999999999988888999999999999999999998655443
No 24
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.3e-14 Score=116.01 Aligned_cols=67 Identities=25% Similarity=0.595 Sum_probs=62.3
Q ss_pred CCCcCcCCCcccccC-ceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010326 158 GYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (513)
Q Consensus 158 g~~~C~~C~~~I~~g-~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~ 224 (513)
..++|.+|+++|..+ .++.++++.||+.||+|..|+.+|....|+.++|++||+.||.++|+++|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 457999999999874 8899999999999999999999999888999999999999999999999974
No 25
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.7e-14 Score=115.31 Aligned_cols=67 Identities=31% Similarity=0.678 Sum_probs=62.2
Q ss_pred CCCcCcCCCcccccC-ceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010326 158 GYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (513)
Q Consensus 158 g~~~C~~C~~~I~~g-~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~ 224 (513)
..++|.+|+++|..+ .++.++++.||+.||+|..|+++|.+..|+.++|++||+.||.++|+++|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 457999999999875 6899999999999999999999999988999999999999999999999974
No 26
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=2.4e-14 Score=114.64 Aligned_cols=66 Identities=32% Similarity=0.700 Sum_probs=60.8
Q ss_pred CCCCcCcCCCccccc---CceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccc
Q 010326 157 SGYRICAGCNTEIGH---GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 222 (513)
Q Consensus 157 ~g~~~C~~C~~~I~~---g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC 222 (513)
.+.++|.+|+++|.. ..++.++++.||+.||+|..|+.+|.+..|+.++|+|||+.||.++|+|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 356799999999974 388999999999999999999999999899999999999999999999986
No 27
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=2.1e-14 Score=116.18 Aligned_cols=67 Identities=18% Similarity=0.395 Sum_probs=60.3
Q ss_pred CCCCcCcCCCccccc-CceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 010326 157 SGYRICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (513)
Q Consensus 157 ~g~~~C~~C~~~I~~-g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~ 223 (513)
...++|.+|+++|.. +.++.++++.||+.||+|..|+++|....|+.++|++||+.||.++|+++|.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 456899999999985 5778999999999999999999999988898999999999999999999996
No 28
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=5.5e-14 Score=117.38 Aligned_cols=68 Identities=21% Similarity=0.497 Sum_probs=62.2
Q ss_pred CCCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 010326 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (513)
Q Consensus 156 ~~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~ 224 (513)
....++|.+|++.|. ++++.++++.||+.||+|..|+++|....|+..++++||+.||.++|+++|.+
T Consensus 22 ~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~g 89 (89)
T 1x64_A 22 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSSG 89 (89)
T ss_dssp CCSCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCCC
T ss_pred CCcCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCCC
Confidence 456689999999996 68899999999999999999999999888888999999999999999999863
No 29
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=1.8e-14 Score=117.72 Aligned_cols=67 Identities=19% Similarity=0.463 Sum_probs=61.6
Q ss_pred CCCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 010326 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (513)
Q Consensus 156 ~~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~ 223 (513)
....++|.+|+++|. +++|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|++.
T Consensus 12 ~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 12 AQKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 346789999999996 6799999999999999999999999888888999999999999999999875
No 30
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.46 E-value=1.8e-14 Score=113.39 Aligned_cols=63 Identities=27% Similarity=0.561 Sum_probs=59.1
Q ss_pred CCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcc
Q 010326 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK 221 (513)
Q Consensus 158 g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pk 221 (513)
..++|++|+++|. ++++.++++.||+.||+|..|+.+|.+..|+.++|++||+.||.++|+|+
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 4579999999997 88999999999999999999999999888999999999999999999985
No 31
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=5.9e-14 Score=114.83 Aligned_cols=77 Identities=23% Similarity=0.430 Sum_probs=68.3
Q ss_pred CCcCCCCCC-CCCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCC-ccee-ecCCccccccccccccCcccc
Q 010326 147 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD-VEFS-MSGNRPYHKHCYKEQHHPKCD 223 (513)
Q Consensus 147 gsv~~p~~~-~~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~-~~F~-~~dG~pYCk~CY~~~f~pkC~ 223 (513)
+++||..++ ....++|++|+++|. +.++.++++.||+.||+|..|+++|.. ..|. ..+++|||+.||.++|++.|.
T Consensus 2 ~~~yC~~~y~~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CCCCCCCCSSCCSSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CCccchhHHhhhcCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 567899888 667789999999997 889999999999999999999999964 5676 489999999999999999886
Q ss_pred c
Q 010326 224 V 224 (513)
Q Consensus 224 ~ 224 (513)
+
T Consensus 81 g 81 (81)
T 1x6a_A 81 G 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 32
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=6e-14 Score=111.66 Aligned_cols=66 Identities=32% Similarity=0.689 Sum_probs=60.7
Q ss_pred CCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 010326 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (513)
Q Consensus 157 ~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~ 223 (513)
.+.++|.+|+++|. ++++.++++.||+.||+|..|+.+|.+..|+.++|++||+.||.++|++++.
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 35689999999996 7889999999999999999999999998898899999999999999988764
No 33
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=8.7e-14 Score=113.90 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=60.0
Q ss_pred CCCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 010326 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (513)
Q Consensus 156 ~~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~ 223 (513)
..+.++|.+|+++|. +++|.++++.||+.||+|..|+.+|.+..| .++|++||+.||.++|+|++.
T Consensus 12 ~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EETTEEECHHHHHTTSCCSSC
T ss_pred ccCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCCE-eECCEEeCHHHHHHhCCCCCC
Confidence 346689999999997 888999999999999999999999998765 789999999999999999775
No 34
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=3e-13 Score=111.51 Aligned_cols=68 Identities=19% Similarity=0.386 Sum_probs=60.7
Q ss_pred CCCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCccee--ecCCccccccccccccCcccc
Q 010326 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFS--MSGNRPYHKHCYKEQHHPKCD 223 (513)
Q Consensus 156 ~~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~--~~dG~pYCk~CY~~~f~pkC~ 223 (513)
..+.++|.+|+++|+.++.+.++++.||+.||+|..|+.+|....|. ..+|++||+.||.++|.+-+.
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~ 81 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSS 81 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCCC
Confidence 45678999999999888889999999999999999999999998887 479999999999998886543
No 35
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.8e-13 Score=110.70 Aligned_cols=70 Identities=21% Similarity=0.487 Sum_probs=63.2
Q ss_pred CCcCCCCCC-CCCCCcCcCCCccccc----CceeeecCccccCCCcccCCCCCCCCCcceeecCCcccccccccc
Q 010326 147 GNIFQPFPF-FSGYRICAGCNTEIGH----GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKE 216 (513)
Q Consensus 147 gsv~~p~~~-~~g~~~C~~C~~~I~~----g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~ 216 (513)
+++||..++ ....++|++|+++|.. ..++.++++.||+.||+|..|+++|.+..|+.++|+|||+.||.+
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred CCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 568999888 6677999999999973 388999999999999999999999998889999999999999965
No 36
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=1.5e-13 Score=109.78 Aligned_cols=68 Identities=24% Similarity=0.570 Sum_probs=59.9
Q ss_pred CCCCcCcCCCccccc-CceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccC
Q 010326 157 SGYRICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVC 225 (513)
Q Consensus 157 ~g~~~C~~C~~~I~~-g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~C 225 (513)
.+.++|.+|+++|.. +.++.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++| .+|..+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~-~~~~~~ 71 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL-ESGPSS 71 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH-HTCSSC
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH-ccCCCC
Confidence 356799999999976 46899999999999999999999998888999999999999999887 456554
No 37
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=2.5e-13 Score=111.13 Aligned_cols=75 Identities=13% Similarity=0.274 Sum_probs=63.4
Q ss_pred CCccccccccccccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccc
Q 010326 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (513)
Q Consensus 205 dG~pYCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC 284 (513)
++.|||+.||.++|+++|..|+++|.+. .+.+.+.. ||..||+|..|++.|..+..|++..++++||
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C 67 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGP---FMVAGEFK----------YHPECFACMSCKVIIEDGDAYALVQHATLYC 67 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSC---CBCCTTCC----------BCTTSCBCTTTCCBCCTTSCEEECSSSCEEE
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCce---EEEECCce----------eccccCCccCCCCccCCCCcEEEeeCCEEEC
Confidence 4789999999999999999999999953 45555543 5999999999999997677777556899999
Q ss_pred cccccccc
Q 010326 285 LECLDSAI 292 (513)
Q Consensus 285 ~~Cy~~~v 292 (513)
..||.+.+
T Consensus 68 ~~c~~~~~ 75 (81)
T 1x6a_A 68 GKCHNEVV 75 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998854
No 38
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.5e-13 Score=110.48 Aligned_cols=80 Identities=29% Similarity=0.581 Sum_probs=64.6
Q ss_pred CCccccccccccccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccc
Q 010326 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (513)
Q Consensus 205 dG~pYCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC 284 (513)
+|+|||+.||.++|+++|.+|+++|.+.. .++.+.+. +||..||+|..|++.|. +..|+. .++++||
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~f~~-~~~~~~C 67 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDS-RELFYEDR----------HFHEGCFRCCRCQRSLA-DEPFTC-QDSELLC 67 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSC-CBCCCSSC----------CCBTTTSBCTTTCCBCS-SCCEEE-ETTEEEE
T ss_pred CCceechhHhCcccCCcCccCCCccccCc-EEEEeCCc----------cccccCCeecCCCCccC-CCccEe-eCCEEEC
Confidence 58999999999999999999999999422 24444444 45999999999999996 566764 4889999
Q ss_pred cccccccccCCCCCc
Q 010326 285 LECLDSAIMDTHECQ 299 (513)
Q Consensus 285 ~~Cy~~~v~~t~~C~ 299 (513)
..||.+. +.++|+
T Consensus 68 ~~c~~~~--~~~~C~ 80 (82)
T 2ehe_A 68 NDCYCSA--FSSGPS 80 (82)
T ss_dssp TTTSSCC--GGGSSC
T ss_pred HHHHhhh--cCCCCC
Confidence 9999884 467775
No 39
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.38 E-value=1.8e-13 Score=129.80 Aligned_cols=74 Identities=22% Similarity=0.447 Sum_probs=68.8
Q ss_pred CCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCCcC
Q 010326 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIP 230 (513)
Q Consensus 157 ~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~C~~~I~ 230 (513)
.+.++|.+|+++|..++.|.++++.||+.||+|..|+.+|....|+.++|++||+.||.++|+++|.+|+++|.
T Consensus 113 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 113 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCCC
T ss_pred CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCccc
Confidence 45678999999998788899999999999999999999998888889999999999999999999999999863
No 40
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=3.9e-13 Score=109.53 Aligned_cols=78 Identities=18% Similarity=0.453 Sum_probs=65.3
Q ss_pred CCccccccccccccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccc
Q 010326 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (513)
Q Consensus 205 dG~pYCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC 284 (513)
+|+|||+.||.++|+++|..|+++|.+. .|.+.+. .||..||+|..|++.|. +..|+. .++++||
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~~-~~~~~yC 65 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG---GVTYRDQ----------PWHRECLVCTGCQTPLA-GQQFTS-RDEDPYC 65 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC---CEESSSS----------EECTTTCBCSSSCCBCT-TCCEEE-CSSSEEE
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc---EEEECCc----------hhhhhhCCcccCCCcCC-CCeeEe-ECCEEEC
Confidence 5899999999999999999999999874 4555554 35999999999999995 567765 5899999
Q ss_pred cccccccccCCCCCc
Q 010326 285 LECLDSAIMDTHECQ 299 (513)
Q Consensus 285 ~~Cy~~~v~~t~~C~ 299 (513)
..||.+. +.+.|.
T Consensus 66 ~~cy~~~--f~~~c~ 78 (80)
T 2cuq_A 66 VACFGEL--FASGPS 78 (80)
T ss_dssp HHHHHHH--TTCSTT
T ss_pred HHHHHHH--cCCCCC
Confidence 9999984 567775
No 41
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.36 E-value=4.5e-13 Score=108.00 Aligned_cols=63 Identities=27% Similarity=0.591 Sum_probs=56.8
Q ss_pred CCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCC-CcceeecCCccccccccccccCcc
Q 010326 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHPK 221 (513)
Q Consensus 158 g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~-~~~F~~~dG~pYCk~CY~~~f~pk 221 (513)
+.+.|++|+++|. +++|.++++.||+.||+|..|+.+|. +..|+..++++||+.||..++...
T Consensus 4 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 4 GSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp SCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred CcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 5679999999995 68899999999999999999999998 678888999999999999877653
No 42
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.35 E-value=6.1e-13 Score=108.87 Aligned_cols=79 Identities=15% Similarity=0.272 Sum_probs=65.4
Q ss_pred CCccccccccccccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccc
Q 010326 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (513)
Q Consensus 205 dG~pYCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC 284 (513)
+|+|||+.||. ++.++|..|+++|.+. ++.+.+.. ||+.||+|..|++.|. +..|+...+|++||
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~f~~~~~g~~yC 66 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDR---ILRAMGKA----------YHPGCFTCVVCHRGLD-GIPFTVDATSQIHC 66 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSC---CEEETTEE----------ECTTTCBCSSSCCBCT-TSCEECCTTCCCEE
T ss_pred cCCEECHHHhh-cCCCccccCCCeecce---eEEECCcc----------ccHHhcCcccCCCccC-CCeeEECCCCEEEC
Confidence 68999999999 7999999999999963 56665554 5999999999999995 66676544789999
Q ss_pred cccccccccCCCCCcc
Q 010326 285 LECLDSAIMDTHECQP 300 (513)
Q Consensus 285 ~~Cy~~~v~~t~~C~~ 300 (513)
..||.+. +.++|+.
T Consensus 67 ~~cy~~~--f~~~C~~ 80 (81)
T 2dlo_A 67 IEDFHRK--FASGPSS 80 (81)
T ss_dssp HHHHHHH--TTSSSCC
T ss_pred HHHHHHH--hcCcCCC
Confidence 9999884 5788863
No 43
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=6.6e-13 Score=108.20 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=65.5
Q ss_pred CCccccccccccccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccc
Q 010326 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (513)
Q Consensus 205 dG~pYCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC 284 (513)
+|++||+.||.++|+++|..|+++|.+. .|...+.. ||..||+|..|++.|.. ..|+.. ++++||
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~---~v~a~~~~----------~H~~CF~C~~C~~~L~~-~~~~~~-~~~~yC 65 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLEN---YLSAMDTV----------WHPECFVCGDCFTSFST-GSFFEL-DGRPFC 65 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS---CEEETTEE----------ECTTTCBCSSSCCBSCS-SCCEES-SSCEEC
T ss_pred CCCccchhHHhhhcCCccccCCCeecce---eEEECCCe----------EecCcCChhhCCCCCCC-CcEEeE-CCEEEC
Confidence 5789999999999999999999999974 45555554 59999999999999964 467654 899999
Q ss_pred cccccccccCCCCCcc
Q 010326 285 LECLDSAIMDTHECQP 300 (513)
Q Consensus 285 ~~Cy~~~v~~t~~C~~ 300 (513)
..||.+. +.++|+.
T Consensus 66 ~~~y~~~--f~~~C~~ 79 (80)
T 1x3h_A 66 ELHYHHR--RGSGPSS 79 (80)
T ss_dssp HHHHHHH--HSSSCCC
T ss_pred HHHHHHH--cCCCCCC
Confidence 9999984 4677763
No 44
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.33 E-value=9.5e-13 Score=116.92 Aligned_cols=64 Identities=22% Similarity=0.541 Sum_probs=57.2
Q ss_pred CCCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCC--CcceeecCCccccccccccccC
Q 010326 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPIT--DVEFSMSGNRPYHKHCYKEQHH 219 (513)
Q Consensus 156 ~~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~--~~~F~~~dG~pYCk~CY~~~f~ 219 (513)
....++|++|+++|....++.++++.||+.||+|..|+.+|. +..|+.++|+|||+.||.++|+
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 455789999999997666799999999999999999999997 3578889999999999999885
No 45
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.32 E-value=6.9e-13 Score=105.30 Aligned_cols=63 Identities=19% Similarity=0.438 Sum_probs=56.8
Q ss_pred CCCCcCcCCCcccccCc-eeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccC
Q 010326 157 SGYRICAGCNTEIGHGR-YLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH 219 (513)
Q Consensus 157 ~g~~~C~~C~~~I~~g~-~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~ 219 (513)
...++|.+|+++|..++ ++.++++.||+.||+|..|+++|....|+..+|++||+.||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 45679999999997654 5789999999999999999999998888889999999999998875
No 46
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.30 E-value=1.2e-12 Score=115.71 Aligned_cols=73 Identities=15% Similarity=0.296 Sum_probs=65.4
Q ss_pred CcCcCCCccccc-CceeeecCccccCCCcccCCCCCCC-CCcceeecCCccccccccccccCcccccCCCCcCCC
Q 010326 160 RICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPI-TDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTN 232 (513)
Q Consensus 160 ~~C~~C~~~I~~-g~~l~alg~~wHp~CFrCs~C~~~L-~~~~F~~~dG~pYCk~CY~~~f~pkC~~C~~~I~~~ 232 (513)
+.|.+|+++|.. +.++.++++.||+.||+|..|+++| .+..|+..++++||+.||.++|+++|..|...+...
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~ 83 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGG 83 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCCS
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCccC
Confidence 389999999976 4678999999999999999999999 455788899999999999999999999998887654
No 47
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=105.45 Aligned_cols=73 Identities=22% Similarity=0.480 Sum_probs=60.2
Q ss_pred CCccccccccccccCcccccCCCCcCC---CCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCc
Q 010326 205 GNRPYHKHCYKEQHHPKCDVCQNFIPT---NSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGR 281 (513)
Q Consensus 205 dG~pYCk~CY~~~f~pkC~~C~~~I~~---~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr 281 (513)
+++|||+.||.++|+++|.+|+++|.+ .. ..+.+.+.. ||..||+|..|++.|. +..|+. .+++
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~-~~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~f~~-~~~~ 67 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGS-SVVAYEGQS----------WHDYCFHCKKCSVNLA-NKRFVF-HQEQ 67 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCC-CEEEETTEE----------EETTTCBCSSSCCBCT-TSCCCE-ETTE
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCc-eeEEECcce----------eCcccCEehhcCCCCC-CCccEe-ECCE
Confidence 478999999999999999999999996 21 245555553 5999999999999996 566764 4899
Q ss_pred ccccccccc
Q 010326 282 KLCLECLDS 290 (513)
Q Consensus 282 ~yC~~Cy~~ 290 (513)
+||..||.+
T Consensus 68 ~yC~~cy~~ 76 (77)
T 2egq_A 68 VYCPDCAKK 76 (77)
T ss_dssp ECCHHHHHH
T ss_pred EEChHHhcc
Confidence 999999865
No 48
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.28 E-value=2.8e-12 Score=104.97 Aligned_cols=79 Identities=16% Similarity=0.400 Sum_probs=63.3
Q ss_pred CCccccccccccccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccc
Q 010326 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (513)
Q Consensus 205 dG~pYCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC 284 (513)
++.|||+.||.++|+++|..|+++|.... .++.+.+. .||..||+|..|++.|.. ..|+. .++++||
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~~-~~~~~yC 67 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGD-QNVEYKGT----------VWHKDCFTCSNCKQVIGT-GSFFP-KGEDFYC 67 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSS-CEEECSSC----------EEETTTCCCSSSCCCCTT-SCEEE-ETTEEEE
T ss_pred CCCcCchhHHccccCCcCccCCcccccCc-eEEEECcc----------ccccccCchhhCCCccCC-CccEe-eCCEEEC
Confidence 47899999999999999999999998643 23555554 359999999999999964 46765 4899999
Q ss_pred cccccccccCCCCC
Q 010326 285 LECLDSAIMDTHEC 298 (513)
Q Consensus 285 ~~Cy~~~v~~t~~C 298 (513)
..||.+. +.++|
T Consensus 68 ~~cy~~~--f~~~~ 79 (82)
T 1x63_A 68 VTCHETK--FASGP 79 (82)
T ss_dssp HHHHHHH--TSCCC
T ss_pred HHHHHHH--hCCCC
Confidence 9999884 35554
No 49
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.24 E-value=2.5e-12 Score=101.12 Aligned_cols=59 Identities=24% Similarity=0.562 Sum_probs=54.1
Q ss_pred CCcCcCCCccccc-CceeeecCcccc--CCCcccCCCCCCCCCcceeecCCcccc-ccccccc
Q 010326 159 YRICAGCNTEIGH-GRYLSCMEAFWH--PECFRCHSCNLPITDVEFSMSGNRPYH-KHCYKEQ 217 (513)
Q Consensus 159 ~~~C~~C~~~I~~-g~~l~alg~~wH--p~CFrCs~C~~~L~~~~F~~~dG~pYC-k~CY~~~ 217 (513)
.+.|.+|+++|.. +..|.++++.|| +.||+|..|+.+|.+..|+.++|+||| +.||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4689999999987 489999999999 999999999999999899999999999 8898754
No 50
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.24 E-value=5.4e-12 Score=103.22 Aligned_cols=72 Identities=19% Similarity=0.370 Sum_probs=60.2
Q ss_pred CCcCCCCCC-CCCCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCC-ccccccccccccC
Q 010326 147 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGN-RPYHKHCYKEQHH 219 (513)
Q Consensus 147 gsv~~p~~~-~~g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG-~pYCk~CY~~~f~ 219 (513)
+++||..+| ....++|++|+++|. +++|.++++.||+.||+|..|+++|....|+..++ .+||+.||.+.+.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CCCcchHHHHhHhCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 467899888 667789999999996 78999999999999999999999998665554445 5799999976543
No 51
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.17 E-value=1.6e-11 Score=100.40 Aligned_cols=73 Identities=14% Similarity=0.284 Sum_probs=59.4
Q ss_pred CccccccccccccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCccccc
Q 010326 206 NRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL 285 (513)
Q Consensus 206 G~pYCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~ 285 (513)
+.+||+.||.++|+++|..|+++|.+. +|.+.+.. ||..||+|..|++.|..+. ++.++++.+||.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~---~v~a~~~~----------wH~~CF~C~~C~~~L~~~~-~~~~~~~~~~C~ 67 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGE---VVSALGKT----------YHPDCFVCAVCRLPFPPGD-RVTFNGKECMCQ 67 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSC---CEEETTEE----------ECTTTSSCSSSCCCCCSSS-CEEEETTEEEEH
T ss_pred CCCcchHHHHhHhCCcCccccCEeccc---eEEECCce----------eCccCCccccCCCCCCCCC-EEEeCCCCEECh
Confidence 569999999999999999999999963 56666654 5999999999999997555 445545557999
Q ss_pred ccccccc
Q 010326 286 ECLDSAI 292 (513)
Q Consensus 286 ~Cy~~~v 292 (513)
.||.+.+
T Consensus 68 ~C~~~~~ 74 (81)
T 1v6g_A 68 KCSLPVS 74 (81)
T ss_dssp HHHSCCS
T ss_pred hhhcccC
Confidence 9998753
No 52
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.04 E-value=2.8e-11 Score=114.44 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=63.2
Q ss_pred CCCcCCCCCC-CCCCC--cCcCCCcccccC-ceeeecCccccCCCcccCCCCCCCC-CcceeecCCccccccccccccCc
Q 010326 146 SGNIFQPFPF-FSGYR--ICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHP 220 (513)
Q Consensus 146 ~gsv~~p~~~-~~g~~--~C~~C~~~I~~g-~~l~alg~~wHp~CFrCs~C~~~L~-~~~F~~~dG~pYCk~CY~~~f~p 220 (513)
.|.+||..++ ....+ .|.+|+++|... .++.++++.||+.||+|..|+++|. +..|+..++++||+.||.+++.+
T Consensus 53 ~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~ 132 (188)
T 1rut_X 53 SGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALIN 132 (188)
T ss_dssp TTEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC-
T ss_pred CCccccccccccccccCCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcc
Confidence 4677888776 33334 799999999764 5789999999999999999999995 56788899999999999999999
Q ss_pred ccccCCC
Q 010326 221 KCDVCQN 227 (513)
Q Consensus 221 kC~~C~~ 227 (513)
+|..++.
T Consensus 133 ~~~~~g~ 139 (188)
T 1rut_X 133 GHLNSGG 139 (188)
T ss_dssp -------
T ss_pred cccccCC
Confidence 9987765
No 53
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.00 E-value=2.3e-11 Score=107.92 Aligned_cols=75 Identities=16% Similarity=0.293 Sum_probs=62.9
Q ss_pred CCCcCCCCCC-CCCCC--cCcCCCcccccC-ceeeecCccccCCCcccCCCCCCCC-CcceeecCCccccccccccccCc
Q 010326 146 SGNIFQPFPF-FSGYR--ICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHP 220 (513)
Q Consensus 146 ~gsv~~p~~~-~~g~~--~C~~C~~~I~~g-~~l~alg~~wHp~CFrCs~C~~~L~-~~~F~~~dG~pYCk~CY~~~f~p 220 (513)
.|.+|+..++ ....+ .|.+|+++|... .++.++++.||+.||+|..|+++|. +..|+..+|++||+.||.++|++
T Consensus 50 ~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 50 LGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp TTEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHH
T ss_pred CCEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhc
Confidence 5677777766 33344 899999999754 5789999999999999999999994 66788899999999999987764
No 54
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=98.96 E-value=1e-10 Score=103.22 Aligned_cols=73 Identities=18% Similarity=0.360 Sum_probs=63.4
Q ss_pred CCCcCCCCCC-CCCCCcCcCCCccccc-CceeeecCcccc--CCCcccCCCCCCCCCcceeecCCcccccccccccc
Q 010326 146 SGNIFQPFPF-FSGYRICAGCNTEIGH-GRYLSCMEAFWH--PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH 218 (513)
Q Consensus 146 ~gsv~~p~~~-~~g~~~C~~C~~~I~~-g~~l~alg~~wH--p~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f 218 (513)
.|.+|+...+ ....+.|.+|+++|.. +.+|.++++.|| +.||+|..|+++|.+..|...+|++||+.+|.++|
T Consensus 49 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 49 NDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp TTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CCEEechHHhCcCcCccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 4667777666 5567899999999976 478999999999 99999999999999888989999999998887665
No 55
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.90 E-value=9.9e-10 Score=88.64 Aligned_cols=71 Identities=18% Similarity=0.369 Sum_probs=57.0
Q ss_pred cccCcccccCCCCcCC--CCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCccccccccccccc
Q 010326 216 EQHHPKCDVCQNFIPT--NSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 293 (513)
Q Consensus 216 ~~f~pkC~~C~~~I~~--~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~ 293 (513)
++|+++|..|+++|.+ .. ..+.+.+.. ||..||+|..|++.|. +..|+. .++++||..||.+ .
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~-~~~~a~~~~----------wH~~CF~C~~C~~~L~-~~~f~~-~~g~~yC~~cy~~--~ 66 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGA-KFICFQDSQ----------WHSECFNCGKCSVSLV-GKGFLT-QNKEIFCQKCGSG--M 66 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTC-CEEEETTEE----------EEGGGCBCTTTCCBCS-SSCEEE-ETTEEEETTTTCC--C
T ss_pred CccCCCCccCCCcccCCCCc-eeEEECCcc----------cCcccCChhhCCCcCC-CCceEe-ECCEEECHHHhhh--h
Confidence 4689999999999996 21 245555543 5999999999999996 667775 4899999999998 5
Q ss_pred CCCCCccc
Q 010326 294 DTHECQPL 301 (513)
Q Consensus 294 ~t~~C~~c 301 (513)
+.++|+++
T Consensus 67 f~~~C~~~ 74 (76)
T 1x68_A 67 DTDISGPS 74 (76)
T ss_dssp CCCSSSSS
T ss_pred hCCcCCCC
Confidence 68899876
No 56
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.82 E-value=3.3e-09 Score=88.40 Aligned_cols=76 Identities=13% Similarity=0.260 Sum_probs=59.6
Q ss_pred ccccccccccccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccc
Q 010326 207 RPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLE 286 (513)
Q Consensus 207 ~pYCk~CY~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~ 286 (513)
.+.+...+...+.++|..|+++|.+. .+.+.++. ||..||+|..|++.|. +..|+ ..++++||..
T Consensus 13 ~~~~~~~~~~~~~~~C~~C~~~I~~~---~v~a~~~~----------~H~~CF~C~~C~~~L~-~~~f~-~~~g~~yC~~ 77 (90)
T 2dar_A 13 VQRAEHIPAGKRTPMCAHCNQVIRGP---FLVALGKS----------WHPEEFNCAHCKNTMA-YIGFV-EEKGALYCEL 77 (90)
T ss_dssp CBCCEEECTTTCCCBBSSSCCBCCSC---EEEETTEE----------ECTTTCBCSSSCCBCS-SSCBE-ESSSCEECHH
T ss_pred hhhcccCCCCCCCCCCccCCCEecce---EEEECCcc----------ccccCCccCCCCCCCC-CCEeE-eECCEEECHH
Confidence 34455557778999999999999754 45555554 5999999999999996 55676 4589999999
Q ss_pred cccccccCCCCCc
Q 010326 287 CLDSAIMDTHECQ 299 (513)
Q Consensus 287 Cy~~~v~~t~~C~ 299 (513)
||.+. +.++|.
T Consensus 78 cy~~~--f~~~c~ 88 (90)
T 2dar_A 78 CYEKF--FASGPS 88 (90)
T ss_dssp HHHHH--TSCCCC
T ss_pred HHHHH--cCCCCC
Confidence 99984 577775
No 57
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.81 E-value=3.2e-09 Score=85.29 Aligned_cols=63 Identities=17% Similarity=0.383 Sum_probs=51.1
Q ss_pred cccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccc
Q 010326 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (513)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v 292 (513)
.+|+++|.+|+++|.+. +|.+.+. +||+.||+|..|++.|..+..|+. .++++||..||.++.
T Consensus 2 s~~~~~C~~C~~~I~~~---~v~a~~~----------~wH~~CF~C~~C~~~L~~~~~f~~-~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 2 SSGSSGCDSCEKYITGR---VLEAGEK----------HYHPSCALCVRCGQMFAEGEEMYL-QGSSIWHPACRQAAR 64 (73)
T ss_dssp CCSCCSCSSSCCCCSSC---CBCCSSC----------CBCTTTSCCSSSCCCCCSSCCCEE-ETTEEECTTHHHHTS
T ss_pred CcCcCCcccCCCEecCe---eEEeCCC----------CCCCCcCEeCCCCCCCCCCCeeEe-eCCEEEChHHChHhh
Confidence 36889999999999974 4555554 459999999999999976777775 488999999998743
No 58
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.79 E-value=7e-10 Score=97.81 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=59.8
Q ss_pred ccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCC-CCceEEccCCcccccccccccccCC
Q 010326 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR-DTKYLSLDDGRKLCLECLDSAIMDT 295 (513)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~-g~~y~~l~dgr~yC~~Cy~~~v~~t 295 (513)
++.++|..|+++|.+.. ++.+.+.. ||+.||+|..|++.|.. +..|+. .+|++||..||.+.+ .
T Consensus 3 ~~~~~C~~C~~~I~~~~--~~~a~~~~----------wH~~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~cy~~~f--~ 67 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRF--LLYAMDSY----------WHSRCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLF--G 67 (122)
T ss_dssp SCCCCBSSSSSCCCSSC--CEEETTEE----------ECHHHHCCSSSCCCTTTSEECCEE-ETTEEECHHHHHHHH--C
T ss_pred CCCCCCcccCCEeCCcE--EEEECCce----------eHhhCCCcCCCCCcccccCCeEEE-ECCeeecHHHHHHHc--C
Confidence 46789999999999753 45555553 59999999999999962 456774 589999999999954 5
Q ss_pred C--CCcccchHH
Q 010326 296 H--ECQPLYLEI 305 (513)
Q Consensus 296 ~--~C~~c~~~I 305 (513)
+ .|..|.++|
T Consensus 68 ~~~~C~~C~~~I 79 (122)
T 1m3v_A 68 NSGAGGSGGHMG 79 (122)
T ss_dssp CCCSSSCSSCCS
T ss_pred CCCccccCCCCc
Confidence 6 999999887
No 59
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.77 E-value=4.7e-09 Score=83.37 Aligned_cols=69 Identities=14% Similarity=0.433 Sum_probs=53.9
Q ss_pred cccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccccCC
Q 010326 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 295 (513)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t 295 (513)
++|+++|..|+++|.... .++.+.+.. ||..||+|..|++.|.. ..|+. .++++||..||.+. +.
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~~----------~H~~CF~C~~C~~~L~~-~~~~~-~~~~~yC~~cy~~~--f~ 66 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGT-RKMEYKGSS----------WHETCFICHRCQQPIGT-KSFIP-KDNQNFCVPCYEKQ--HA 66 (72)
T ss_dssp CSCCCCBSSSCCCCCSSS-CEEEETTEE----------EETTTTCCSSSCCCCCS-SSEEE-ETTEEEEHHHHHHH--TS
T ss_pred CccCCCCccCCCcccCCc-eEEEECcCe----------ecccCCcccccCCccCC-CccCc-cCCeEECHHHHhHH--hC
Confidence 468899999999999642 245555543 59999999999999964 46765 48999999999884 56
Q ss_pred CCCc
Q 010326 296 HECQ 299 (513)
Q Consensus 296 ~~C~ 299 (513)
++|+
T Consensus 67 ~~C~ 70 (72)
T 1x4k_A 67 SGPS 70 (72)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7775
No 60
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.77 E-value=4.7e-09 Score=83.02 Aligned_cols=67 Identities=18% Similarity=0.374 Sum_probs=53.2
Q ss_pred cccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccccCC
Q 010326 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 295 (513)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t 295 (513)
.++.++|..|+++|.+. .+.+.+. .||+.||+|..|++.|. +..|+. .++++||..||.+. +.
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~~-~~~~~yC~~cy~~~--f~ 64 (70)
T 2d8z_A 2 SSGSSGCVQCKKPITTG---GVTYREQ----------PWHKECFVCTACRKQLS-GQRFTA-RDDFAYCLNCFCDL--YA 64 (70)
T ss_dssp CCCCCBCSSSCCBCCSS---EEESSSS----------EEETTTSBCSSSCCBCT-TSCCEE-SSSSEECHHHHHHH--TC
T ss_pred CCCCCCCcccCCeeccc---eEEECcc----------ccCCCCCccCCCCCcCC-cCceEe-eCCeEECHHHHHHH--hc
Confidence 35789999999999864 3555554 35999999999999995 566764 58999999999884 57
Q ss_pred CCCc
Q 010326 296 HECQ 299 (513)
Q Consensus 296 ~~C~ 299 (513)
++|.
T Consensus 65 ~~c~ 68 (70)
T 2d8z_A 65 SGPS 68 (70)
T ss_dssp CCCT
T ss_pred cccC
Confidence 7775
No 61
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.77 E-value=4.4e-09 Score=83.06 Aligned_cols=66 Identities=15% Similarity=0.419 Sum_probs=53.1
Q ss_pred ccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccccCCC
Q 010326 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 296 (513)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~ 296 (513)
.+.++|..|+++|.+. .+.+.+.. ||..||+|..|++.|. +..|+. .++++||..||.+. +.+
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~-~~~~~yC~~cy~~~--f~~ 65 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG---GITYQDQP----------WHADCFVCVTCSKKLA-GQRFTA-VEDQYYCVDCYKNF--VSG 65 (69)
T ss_dssp CCCCCCSSSCCCCCTT---CEEETTEE----------ECTTTTBCTTTCCBCT-TSCEEE-CSSCEEEHHHHHHH--HTC
T ss_pred CCcCCCcccCCEeCcc---eEEECccc----------cccCcCEECCCCCCCC-CCccEe-ECCEEECHHHhHHH--hcC
Confidence 5788999999999864 46665554 5999999999999996 667765 58999999999884 467
Q ss_pred CCc
Q 010326 297 ECQ 299 (513)
Q Consensus 297 ~C~ 299 (513)
+|.
T Consensus 66 ~C~ 68 (69)
T 2cur_A 66 PSS 68 (69)
T ss_dssp SCC
T ss_pred CCC
Confidence 775
No 62
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.76 E-value=2.9e-09 Score=93.95 Aligned_cols=75 Identities=12% Similarity=0.195 Sum_probs=58.0
Q ss_pred cccccCc--ccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCccccccccccc
Q 010326 214 YKEQHHP--KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 291 (513)
Q Consensus 214 Y~~~f~p--kC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~ 291 (513)
|.++|++ +|..|+++|.... .++.+.+. +||..||+|..|++.|..+..|+.. ++++||..||.+.
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e-~~~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~ 68 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYE-MTMRVKDK----------VYHLECFKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEW 68 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTC-CCCCCSSC----------CCCTTTCBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHH
T ss_pred ChhhhCCCCcccCCCCeecCCc-eEEEECCc----------ccccccCccccCCCCCCCCCcEEee-CCEEEcHHHhHHH
Confidence 6778998 9999999998642 23445444 4599999999999999767788755 7999999999885
Q ss_pred ccCCCCCcccc
Q 010326 292 IMDTHECQPLY 302 (513)
Q Consensus 292 v~~t~~C~~c~ 302 (513)
+ .++|..+.
T Consensus 69 ~--~~~~~~~~ 77 (123)
T 2l3k_A 69 T--KINGGSGG 77 (123)
T ss_dssp H--HHHTCCCC
T ss_pred h--ccccCCCC
Confidence 3 55565443
No 63
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.75 E-value=6e-09 Score=82.74 Aligned_cols=69 Identities=17% Similarity=0.414 Sum_probs=53.4
Q ss_pred cccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccccCC
Q 010326 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 295 (513)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t 295 (513)
++|+++|..|+++|.... .++.+.+. .||..||+|..|++.|. +..|+. .++++||..||.+ ++.
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~~-~~~~~yC~~cy~~--~f~ 66 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGS-RKLEYGGQ----------TWHEHCFLCSGCEQPLG-SRSFVP-DKGAHYCVPCYEN--KFA 66 (72)
T ss_dssp CCCCCBCSSSCCBCCSSS-CEECSTTC----------CEETTTCBCTTTCCBTT-TSCEEE-ETTEEEEHHHHHH--HTS
T ss_pred CccCCCCccCCCccccCc-cEEEECcc----------ccCcccCeECCCCCcCC-CCccCC-cCCeEECHHHHHH--Hcc
Confidence 468899999999999632 24444444 45999999999999996 446764 4899999999988 457
Q ss_pred CCCc
Q 010326 296 HECQ 299 (513)
Q Consensus 296 ~~C~ 299 (513)
++|+
T Consensus 67 ~~C~ 70 (72)
T 1wyh_A 67 SGPS 70 (72)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 7775
No 64
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=98.75 E-value=1.1e-09 Score=101.79 Aligned_cols=77 Identities=21% Similarity=0.354 Sum_probs=63.4
Q ss_pred CCCcCCCCCC-CCCCCcCcCCCcccccCc-eeeecCccccCCCcccCCCCCCCC-Cccee-ecCCccccccccccccCcc
Q 010326 146 SGNIFQPFPF-FSGYRICAGCNTEIGHGR-YLSCMEAFWHPECFRCHSCNLPIT-DVEFS-MSGNRPYHKHCYKEQHHPK 221 (513)
Q Consensus 146 ~gsv~~p~~~-~~g~~~C~~C~~~I~~g~-~l~alg~~wHp~CFrCs~C~~~L~-~~~F~-~~dG~pYCk~CY~~~f~pk 221 (513)
.|.+||..++ ....+.|.+|+++|..+. ++.++++.||+.||+|..|+.+|. +..|+ ..+|++||+.||.+.+...
T Consensus 51 ~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~ 130 (169)
T 2rgt_A 51 GESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGG 130 (169)
T ss_dssp SSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC
T ss_pred CCeeeecccccccccccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhcc
Confidence 5778888776 556789999999997654 568999999999999999999997 44554 5789999999999887664
Q ss_pred c
Q 010326 222 C 222 (513)
Q Consensus 222 C 222 (513)
+
T Consensus 131 ~ 131 (169)
T 2rgt_A 131 S 131 (169)
T ss_dssp -
T ss_pred C
Confidence 4
No 65
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=98.74 E-value=5.8e-09 Score=97.93 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=65.8
Q ss_pred CCccccccccc---cccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCc
Q 010326 205 GNRPYHKHCYK---EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGR 281 (513)
Q Consensus 205 dG~pYCk~CY~---~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr 281 (513)
++..||..++. ....++|..|+++|.+.. ++.+.+.. ||..||+|..|++.|.. ..| . .+|+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~~~a~~~~----------wH~~CF~C~~C~~~L~~-~~f-~-~~g~ 107 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIPMCAGCDQHILDRF--ILKALDRH----------WHSKCLKCSDCHVPLAE-RCF-S-RGES 107 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCCBCBTSSSBCCCSE--EEEETTEE----------ECSSTTSCTTTCCCCSS-CCE-E-ETTE
T ss_pred ccccccccccccCCCCCCCcCccCCCCccCce--eEEecCCe----------EccccCccCCCCCccCC-Cce-e-ECCE
Confidence 45678887775 456789999999999753 34454443 59999999999999963 344 3 5899
Q ss_pred ccccccccccccCCCCCcccchHH
Q 010326 282 KLCLECLDSAIMDTHECQPLYLEI 305 (513)
Q Consensus 282 ~yC~~Cy~~~v~~t~~C~~c~~~I 305 (513)
+||..||.+ .+.++|..|.++|
T Consensus 108 ~yC~~~y~~--~f~~kC~~C~~~I 129 (182)
T 2jtn_A 108 VYCKDDFFK--RFGTKCAACQLGI 129 (182)
T ss_dssp EECHHHHHH--TTSCCCTTTCCCC
T ss_pred eeecCcccc--ccccccccCCCcc
Confidence 999999998 5589999999776
No 66
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.74 E-value=4.5e-09 Score=88.94 Aligned_cols=74 Identities=22% Similarity=0.482 Sum_probs=59.6
Q ss_pred ccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccccCCC
Q 010326 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 296 (513)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~ 296 (513)
.+.++|..|+++|.... .++.+.+.. ||..||+|..|++.|. +..|+. .+|++||..||.+ .+.+
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~-~~g~~yC~~cy~~--~~~~ 67 (101)
T 2cup_A 3 SGSSGCVECRKPIGADS-KEVHYKNRF----------WHDTCFRCAKCLHPLA-NETFVA-KDNKILCNKCTTR--EDSP 67 (101)
T ss_dssp SCCCBCSSSCCBCCSSS-CEEEETTEE----------EETTTCCCSSSCCCTT-SSCCEE-ETTEEECHHHHTT--CCCC
T ss_pred CCCCcCcccCCcccCCc-eEEEECccC----------hhhcCCcccccCCCCC-cCeeEC-cCCEEEChhHhhh--hcCC
Confidence 46789999999997421 245565553 5999999999999994 666774 4899999999998 5689
Q ss_pred CCcccchHH
Q 010326 297 ECQPLYLEI 305 (513)
Q Consensus 297 ~C~~c~~~I 305 (513)
+|..|.++|
T Consensus 68 ~C~~C~~~I 76 (101)
T 2cup_A 68 KCKGCFKAI 76 (101)
T ss_dssp BCSSSCCBC
T ss_pred ccccCCCcc
Confidence 999999877
No 67
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.68 E-value=1.6e-08 Score=80.41 Aligned_cols=67 Identities=16% Similarity=0.355 Sum_probs=51.2
Q ss_pred ccCcccccCCCCcCC--CCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccccC
Q 010326 217 QHHPKCDVCQNFIPT--NSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMD 294 (513)
Q Consensus 217 ~f~pkC~~C~~~I~~--~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~ 294 (513)
.+.++|..|+++|.+ .. .++.+.++ +||..||+|..|++.|. +..|+. .++++||..||.+. +
T Consensus 3 ~~~~~C~~C~~~I~~~~~~-~~~~a~~~----------~wH~~CF~C~~C~~~L~-~~~f~~-~~g~~yC~~c~~~~--~ 67 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGT-KYISFEER----------QWHNDCFNCKKCSLSLV-GRGFLT-ERDDILCPDCGKDI--S 67 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSC-SCEECSSC----------EECTTTCBCSSSCCBCT-TSCCEE-CSSSEECHHHHHTC--C
T ss_pred CCCCCCcCCCccccCCCCc-ceEEECCc----------ccCcccCEeccCCCcCC-CCccEe-ECCEEEChhHcCcc--c
Confidence 467899999999996 21 24555554 35999999999999995 666664 58999999999884 4
Q ss_pred CCCC
Q 010326 295 THEC 298 (513)
Q Consensus 295 t~~C 298 (513)
.|++
T Consensus 68 ~p~~ 71 (72)
T 1x4l_A 68 GPSS 71 (72)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5544
No 68
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.65 E-value=2e-08 Score=80.78 Aligned_cols=68 Identities=13% Similarity=0.224 Sum_probs=53.5
Q ss_pred cccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCccccc-ccccccccC
Q 010326 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL-ECLDSAIMD 294 (513)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~-~Cy~~~v~~ 294 (513)
..+.++|..|+++|.... .+.+.+.. ||..||+|..|++.|. +..|+.. ++++||. .||.+. +
T Consensus 6 ~~~~~~C~~C~~~I~~~~--~v~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~cy~~~--f 69 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAE--KVSSLGKD----------WHKFCLKCERCSKTLT-PGGHAEH-DGKPFCHKPCYATL--F 69 (76)
T ss_dssp CCCCCBCTTTCCBCCTTT--EEEETTEE----------EETTTCBCSSSCCBCC-TTSCEEE-TTEEECTTTHHHHH--S
T ss_pred CCCCCCCcCCCCEeECCe--EEEECCeE----------eeCCCCCCCCCCCccC-CCceEeE-CCEEecchHHHHHh--c
Confidence 457889999999999543 45555543 5999999999999996 5567754 8999999 799884 5
Q ss_pred CCCCc
Q 010326 295 THECQ 299 (513)
Q Consensus 295 t~~C~ 299 (513)
.++|.
T Consensus 70 ~~kc~ 74 (76)
T 2cu8_A 70 GSGPS 74 (76)
T ss_dssp CSSCS
T ss_pred ccccC
Confidence 77775
No 69
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=98.65 E-value=1.1e-08 Score=80.79 Aligned_cols=65 Identities=14% Similarity=0.394 Sum_probs=50.6
Q ss_pred cccccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCccccccccccc
Q 010326 214 YKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 291 (513)
Q Consensus 214 Y~~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~ 291 (513)
|...+.++|..|+++|.+.. .++...+. +||..||+|..|++.|..+ .|+.. +|++||..||.+.
T Consensus 6 y~~~~~~~C~~C~~~i~~~e-~~~~~~~~----------~~H~~CF~C~~C~~~L~~~-~~~~~-~g~~yC~~~y~~l 70 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAE-KIVNSNGE----------LYHEQCFVCAQCFQQFPEG-LFYEF-EGRKYCEHDFQML 70 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTC-EEEEETTE----------EEETTTSSCTTTCCCCGGG-CCEEE-TTEEECHHHHHHH
T ss_pred ccCcCCccchhcCccccCCc-eEEEeCcC----------eeCcCCCcccCCCCCCCCC-CeEeE-CCeEeCHHHHHHh
Confidence 45578899999999999753 23445444 3599999999999999755 67644 7999999999874
No 70
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.64 E-value=1.6e-08 Score=81.37 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=54.1
Q ss_pred cccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCccccc-ccccccccCCCCC
Q 010326 220 PKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL-ECLDSAIMDTHEC 298 (513)
Q Consensus 220 pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~-~Cy~~~v~~t~~C 298 (513)
|+|..|+++|.... .+...+. .||..||+|..|++.|.. ..|+. .+|++||. .||.+ ++.++|
T Consensus 1 p~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~~-~~g~~yC~~~cy~~--~f~~~C 64 (76)
T 1iml_A 1 PKCPKCDKEVYFAE--RVTSLGK----------DWHRPCLKCEKCGKTLTS-GGHAE-HEGKPYCNHPCYSA--MFGPKG 64 (76)
T ss_dssp CBCTTTSSBCCGGG--EEEETTE----------EEETTTCBCTTTCCBCCT-TTEEE-ETTEEEETTTHHHH--HSSCCC
T ss_pred CcCCCCCCEEECce--EEEECCc----------cccCCCCCccccCccCCC-CceEC-cCCeEeeCHHHHHH--HhCccC
Confidence 68999999998543 4555544 359999999999999964 46775 58999999 69998 458999
Q ss_pred cccch
Q 010326 299 QPLYL 303 (513)
Q Consensus 299 ~~c~~ 303 (513)
..|..
T Consensus 65 ~~C~~ 69 (76)
T 1iml_A 65 FGRGG 69 (76)
T ss_dssp SSCCC
T ss_pred CCcCC
Confidence 99974
No 71
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.63 E-value=2.5e-08 Score=79.23 Aligned_cols=63 Identities=13% Similarity=0.302 Sum_probs=50.1
Q ss_pred ccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccc
Q 010326 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (513)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v 292 (513)
.++++|..|+++|.+.. .++.+.+.. ||..||+|..|++.|. +..|+.. ++++||..||.+.+
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDG-AGVVALDRV----------FHVGCFVCSTCRAQLR-GQHFYAV-ERRAYCEGCYVATL 65 (72)
T ss_dssp SCCCCCSSSCSCCCSSS-CCEECSSSE----------ECTTTCBCSSSCCBCT-TSCEEES-SSCEEEHHHHHHHH
T ss_pred CCCCCCccCCCccCCCc-eEEEECCCe----------EcccCCcccccCCcCC-cCcCEee-CCeEECHHHHHHHH
Confidence 47889999999998632 245555543 5999999999999994 6778755 78999999998864
No 72
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.62 E-value=1.9e-08 Score=80.89 Aligned_cols=68 Identities=13% Similarity=0.253 Sum_probs=51.1
Q ss_pred ccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccccCCC
Q 010326 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 296 (513)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~ 296 (513)
.+.++|.+|+++|.... .++...+.. ||..||+|..|++.|..+ .|+. .+|++||..||.+. +.+
T Consensus 9 ~~~~~C~~C~~~I~~~~-~~~~a~~~~----------~H~~CF~C~~C~~~L~~~-~~~~-~~g~~yC~~~y~~~--f~~ 73 (77)
T 1g47_A 9 LASATCERCKGGFAPAE-KIVNSNGEL----------YHEQCFVCAQCFQQFPEG-LFYE-FEGRKYCEHDFQML--FAP 73 (77)
T ss_dssp CCCCBCSSSCCBCCSTT-TCEEETTEE----------ECTTTCCCTTTCCCCGGG-CSEE-ETTEEECHHHHHHH--CCC
T ss_pred CCCCCchhcCCccCCCc-eEEEeCccE----------eccccCeECCCCCCCCCC-CeEe-ECCeEeCHHHHHHH--hhc
Confidence 46789999999997532 244555553 599999999999999654 5664 48999999999884 467
Q ss_pred CCc
Q 010326 297 ECQ 299 (513)
Q Consensus 297 ~C~ 299 (513)
+|.
T Consensus 74 ~C~ 76 (77)
T 1g47_A 74 CWI 76 (77)
T ss_dssp C--
T ss_pred ccC
Confidence 764
No 73
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.61 E-value=1.3e-08 Score=82.88 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=48.0
Q ss_pred cCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccccCCCC
Q 010326 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 297 (513)
Q Consensus 218 f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~ 297 (513)
..++|..|+++|.... .+...+. .||..||+|..|++.|.. ..|+.. ++++||..||.+ .+.++
T Consensus 6 ~~~~C~~C~~~I~~~~--~~~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~~~-~~~~yC~~cy~~--~f~~~ 69 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE--EVQCDGR----------SFHRCCFLCMVCRKNLDS-TTVAIH-DAEVYCKSCYGK--KYGPK 69 (81)
T ss_dssp --CBCSSSCCBCSSTT--EEEETTE----------EEESSSEECSSSCCEECS-SCCEEE-TTEEECSHHHHH--HCC--
T ss_pred CCCcCcCcCccccCce--eEEeCCc----------ccccccCccCCCCCCCCC-CCeEee-CCEEECHHHHHH--HhCCc
Confidence 4679999999997543 4555554 359999999999999964 467654 899999999998 46899
Q ss_pred Ccccch
Q 010326 298 CQPLYL 303 (513)
Q Consensus 298 C~~c~~ 303 (513)
|..|..
T Consensus 70 c~gcg~ 75 (81)
T 1a7i_A 70 GYGYGQ 75 (81)
T ss_dssp ------
T ss_pred ccccCC
Confidence 998864
No 74
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=98.60 E-value=1.5e-08 Score=79.26 Aligned_cols=61 Identities=15% Similarity=0.277 Sum_probs=48.8
Q ss_pred cccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCccccccccccc
Q 010326 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 291 (513)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~ 291 (513)
.++.++|.+|+++|.+. .+...+. .||..||+|..|++.|. +..|+. .+|++||..||.+.
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~~-~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 2 SMGVPICGACRRPIEGR---VVNAMGK----------QWHVEHFVCAKCEKPFL-GHRHYE-RKGLAYCETHYNQL 62 (66)
T ss_dssp CCCCCEETTTTEECCSC---EECCTTS----------BEETTTCBCTTTCCBCS-SSCCEE-ETTEEECHHHHHHH
T ss_pred CcCCCCCcccCCEecce---EEEECcc----------ccccCcCEECCCCCCCC-CCceEe-ECCcEECHHHHHHH
Confidence 35789999999999953 4555554 35999999999999995 566774 48999999999874
No 75
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.58 E-value=3.7e-08 Score=80.23 Aligned_cols=64 Identities=16% Similarity=0.306 Sum_probs=49.3
Q ss_pred ccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccccCCC
Q 010326 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 296 (513)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~ 296 (513)
.+.++|..|+++|.+. .+.+.+. .||+.||+|..|++.|.. . ++ ..+|++||..||.+. ++|
T Consensus 13 ~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L~~-~-~f-~~~g~~yC~~cy~~~--f~p 74 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQ---PLIFKND----------PYHPDHFNCANCGKELTA-D-AR-ELKGELYCLPCHDKM--GVS 74 (79)
T ss_dssp CCCCBCTTTCCBCCSC---CCCCSSS----------CCCTTTSBCSSSCCBCCT-T-CE-EETTEEECHHHHHTT--SCC
T ss_pred cCCCCCccCCCEecce---EEEECcc----------eeCCCCCEeCCCCCccCC-C-CE-eECCEEeCHHHHHHh--CCC
Confidence 4678999999999954 4555554 359999999999999963 3 45 458999999999984 455
Q ss_pred CC
Q 010326 297 EC 298 (513)
Q Consensus 297 ~C 298 (513)
.+
T Consensus 75 ~~ 76 (79)
T 2cor_A 75 GP 76 (79)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 76
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.56 E-value=4.9e-08 Score=79.84 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=50.7
Q ss_pred cCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccccCCCC
Q 010326 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 297 (513)
Q Consensus 218 f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~ 297 (513)
..++|..|+++|.... .+...++. ||+.||+|..|++.|. + .|+. .++++||..||.+. +.++
T Consensus 14 ~~~~C~~C~~~I~~~~--~v~a~~~~----------wH~~CF~C~~C~~~L~-~-~~~~-~~g~~yC~~~y~~~--fg~~ 76 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQ--SLLALDKQ----------WHVSCFKCQTCSVILT-G-EYIS-KDGVPYCESDYHAQ--FGSG 76 (80)
T ss_dssp SCSCCTTTCCCCSSSC--CEEETTEE----------ECTTTCBCSSSCCBCS-S-CCEE-ETTEEECTTHHHHH--TTCC
T ss_pred CCCCCcCcCCeeCCCe--EEEECCcc----------cccccCCcCcCCCCcC-C-CeEE-ECCEEECHHHHHHH--cCCC
Confidence 3568999999998543 45555543 5999999999999995 4 5764 58999999999984 4677
Q ss_pred Cc
Q 010326 298 CQ 299 (513)
Q Consensus 298 C~ 299 (513)
|.
T Consensus 77 C~ 78 (80)
T 2dj7_A 77 PS 78 (80)
T ss_dssp ST
T ss_pred CC
Confidence 75
No 77
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=98.54 E-value=2.8e-08 Score=77.82 Aligned_cols=60 Identities=22% Similarity=0.491 Sum_probs=47.2
Q ss_pred cCcccccCCCCcCCCCccceeeecccccccccCCCccc--CCCCccCCCCCcCCCCCceEEccCCcccc-cccccc
Q 010326 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHER--DGTPRCCSCERMEPRDTKYLSLDDGRKLC-LECLDS 290 (513)
Q Consensus 218 f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H--~~CF~C~~C~r~l~~g~~y~~l~dgr~yC-~~Cy~~ 290 (513)
|+++|.+|+++|.... ..+.+.+.. || +.||+|..|++.|. +..|+. .+|++|| ..||.+
T Consensus 1 fa~~C~~C~~~I~~~~-~~v~a~~~~----------wH~~~~CF~C~~C~~~L~-~~~f~~-~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEV-QRVTYNNFS----------WHASTECFLCSCCSKCLI-GQKFMP-VEGMVFCSVECKKR 63 (65)
T ss_dssp -CEECTTTSSEECTTS-CEEEETTEE----------EETTTTTSBCTTTCCBCT-TSCCEE-ETTEEESSHHHHHT
T ss_pred CcCCCcCCCCeeccCc-eEEEECCCc----------cCCCCCCEECCCCCCcCC-CCceEE-ECCEEecCHHHhhh
Confidence 5789999999999531 256666654 58 99999999999995 667775 4899999 899876
No 78
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.54 E-value=3e-08 Score=86.30 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=54.7
Q ss_pred CcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCC-CCceEEccCCcccccccccccccCCCC
Q 010326 219 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR-DTKYLSLDDGRKLCLECLDSAIMDTHE 297 (513)
Q Consensus 219 ~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~-g~~y~~l~dgr~yC~~Cy~~~v~~t~~ 297 (513)
.++|.+|+++|.+.. ++.+.+. .||+.||+|..|++.|.. |..|+. .+|++||..||.+. +.++
T Consensus 3 ~~~C~~C~~~I~~~~--~~~a~~~----------~wH~~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~~y~~~--f~~~ 67 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRY--FLKAIDQ----------YWHEDCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRL--GGSG 67 (114)
T ss_dssp CBCBSSSCSCBCSSE--EEECSSS----------EECTTTCCCSSSCSCCCCSSSCCCC-BTTBCCCHHHHHHH--HTSC
T ss_pred CCCCcCCCCeeCCcE--EEEECch----------hHHHhcCcccccCCchhcCCCeeEE-ECCeeechHHHHHH--hCcc
Confidence 468999999999752 4555554 359999999999999963 467774 58999999999984 4788
Q ss_pred Ccccc
Q 010326 298 CQPLY 302 (513)
Q Consensus 298 C~~c~ 302 (513)
|..|.
T Consensus 68 c~~c~ 72 (114)
T 1j2o_A 68 GHMGS 72 (114)
T ss_dssp CSSCB
T ss_pred cCcCC
Confidence 88775
No 79
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.53 E-value=3.7e-08 Score=87.22 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=50.0
Q ss_pred cccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCC-CCCceEEccCCccccccccccc
Q 010326 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEP-RDTKYLSLDDGRKLCLECLDSA 291 (513)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~-~g~~y~~l~dgr~yC~~Cy~~~ 291 (513)
..+.++|.+|+++|.+.. ++.+.+.. ||..||+|..|++.|. .+..|+ ..+|++||..||.+.
T Consensus 58 ~~~~~~C~~C~~~I~~~~--~v~a~~~~----------wH~~CF~C~~C~~~L~~~g~~f~-~~dg~~yC~~cy~~~ 121 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRF--LLYAMDSY----------WHSRCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRL 121 (123)
T ss_dssp CSSCSBBSSSSSBCCSSS--EEEETTEE----------EETTTSBCTTTCCBGGGTTCCCB-CSSSCCBCHHHHHHH
T ss_pred CccCCcCcCCCCCcCCcE--EEEeCCcE----------EcccccCcCcCCCcccccCCceE-EECCEEeCHHHhhhh
Confidence 346789999999999753 45555543 5999999999999996 356777 458999999999874
No 80
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.53 E-value=5.1e-08 Score=81.26 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=53.2
Q ss_pred ccCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccccCCC
Q 010326 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 296 (513)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~ 296 (513)
...++|..|+++|.+.. .+...+. .||..||+|..|++.|..+ .|+ ..++++||..||.+. +.+
T Consensus 13 ~~~~~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L~~~-~~~-~~~g~~yC~~~y~~~--f~~ 76 (91)
T 2d8y_A 13 PARETCVECQKTVYPME--RLLANQQ----------VFHISCFRCSYCNNKLSLG-TYA-SLHGRIYCKPHFNQL--FKS 76 (91)
T ss_dssp SSSCBCTTTCCBCCTTS--EEECSSS----------EEETTTCBCTTTCCBCCTT-TCC-CSSSCCCCHHHHHHH--SCC
T ss_pred CCCCcCccCCCccCCce--eEEECCC----------EECCCCCeeCCCCCCCCCC-CcE-eECCEEECHHHHHHH--hCC
Confidence 45789999999998753 4444444 3599999999999999644 466 458999999999984 578
Q ss_pred CCccc
Q 010326 297 ECQPL 301 (513)
Q Consensus 297 ~C~~c 301 (513)
+|..+
T Consensus 77 kc~~~ 81 (91)
T 2d8y_A 77 KGNYD 81 (91)
T ss_dssp CSCCC
T ss_pred CcCcc
Confidence 88643
No 81
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.52 E-value=6.1e-08 Score=76.63 Aligned_cols=60 Identities=22% Similarity=0.453 Sum_probs=48.3
Q ss_pred cCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccc
Q 010326 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (513)
Q Consensus 218 f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v 292 (513)
+.++|..|+++|.+. .+.+.+.. ||+.||+|..|++.|..+ .|+ ..++++||..||.+.+
T Consensus 4 ~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~~~-~f~-~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGR---VIKAMNNS----------WHPECFRCDLCQEVLADI-GFV-KNAGRHLCRPCHNREK 63 (70)
T ss_dssp CSSBCSSSCCBCCSC---CEEETTEE----------ECTTTSBCSSSCCBCSSS-CCE-EETTEEECHHHHHHHH
T ss_pred CCCcCccCCCEecce---EEEECccc----------ccccCCEeCCCCCcCCCC-ccE-eECCeEECHHHhhhhc
Confidence 568999999999864 46665554 499999999999999644 566 4589999999998854
No 82
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.48 E-value=8.3e-08 Score=79.68 Aligned_cols=65 Identities=17% Similarity=0.339 Sum_probs=50.1
Q ss_pred cCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccccCCCC
Q 010326 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 297 (513)
Q Consensus 218 f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~ 297 (513)
..++|..|+++|.+. ++...+. .||..||+|..|++.|. +..|+.. ++++||..||.+. +.++
T Consensus 24 ~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~y~~~--f~p~ 86 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA---VVKARDK----------YRHPECFVCADCNLNLK-QKGYFFV-EGELYCETHARAR--TSGP 86 (89)
T ss_dssp SCCBCTTTCCBCCSC---CEESSSC----------EECTTTCCCSSSCCCTT-TSCCEEE-TTEEECHHHHHHH--SSSC
T ss_pred cCCCcccCCCEeccc---EEEECCc----------eECccCCEecCCCCCCC-CCCeEeE-CCEEECHHHHHHH--hCCC
Confidence 457899999999974 4555544 35999999999999996 4467755 8999999999885 3555
Q ss_pred Cc
Q 010326 298 CQ 299 (513)
Q Consensus 298 C~ 299 (513)
|.
T Consensus 87 ~~ 88 (89)
T 1x64_A 87 SS 88 (89)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 83
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.43 E-value=2.3e-07 Score=76.05 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=46.8
Q ss_pred CcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEE-ccCCcccccccccccc
Q 010326 219 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLS-LDDGRKLCLECLDSAI 292 (513)
Q Consensus 219 ~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~-l~dgr~yC~~Cy~~~v 292 (513)
.++|..|+++|.... .+.+.+. .||..||+|..|++.|. +..|+. ..+|++||..||.+.+
T Consensus 15 ~~~C~~C~~~I~~~e--~v~a~~~----------~wH~~CF~C~~C~~~L~-~~~~~~~~~~g~~yC~~~y~~~~ 76 (82)
T 2co8_A 15 GDLCALCGEHLYVLE--RLCVNGH----------FFHRSCFRCHTCEATLW-PGGYEQHPGDGHFYCLQHLPQTD 76 (82)
T ss_dssp SCBCSSSCCBCCTTT--BCCBTTB----------CCBTTTCBCSSSCCBCC-TTSEECCTTTCCCEETTTCCCCC
T ss_pred CCCCcccCCCcccce--EEEECCC----------eeCCCcCEEcCCCCCcC-CCceeEeCcCCEEEChHHHHhhh
Confidence 568999999997543 3444444 35999999999999995 445654 3689999999998853
No 84
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.41 E-value=5.4e-08 Score=79.00 Aligned_cols=60 Identities=15% Similarity=0.309 Sum_probs=48.0
Q ss_pred cCcccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccccc
Q 010326 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (513)
Q Consensus 218 f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v 292 (513)
..++|..|+++|.+. ++.+.+.. ||..||+|..|++.|. +..|+.. ++++||..||.+.+
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~cy~~~~ 73 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRH----------RHPECYVCTDCGTNLK-QKGHFFV-EDQIYCEKHARERV 73 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCE----------ECTTTTSCSSSCCCHH-HHCCEES-SSCEECHHHHHHHH
T ss_pred CCCccccCCCCccCc---EEEECcce----------eCcCcCeeCCCCCCCC-CCCeEeE-CCEEECHHHHHHHh
Confidence 467899999999974 45555543 5999999999999995 4567754 89999999998854
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.04 E-value=0.00018 Score=48.50 Aligned_cols=29 Identities=31% Similarity=0.881 Sum_probs=26.8
Q ss_pred CCcCcCCCcccccCceeeecCccccCCCc
Q 010326 159 YRICAGCNTEIGHGRYLSCMEAFWHPECF 187 (513)
Q Consensus 159 ~~~C~~C~~~I~~g~~l~alg~~wHp~CF 187 (513)
.+.|..|++.|+..+.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 35899999999999999999999999998
No 86
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=92.29 E-value=0.065 Score=34.14 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.4
Q ss_pred CChhHHHHHHHhhhhhhhhcCCc
Q 010326 40 FDNEEIDRAIALSLVEVDQKGKK 62 (513)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~ 62 (513)
.|.|||.-|||||++|...+.++
T Consensus 2 ~EeEEl~LAlAlS~sEae~~~~~ 24 (26)
T 2d3g_P 2 QEEEELQLALALSQSEAEEKXXX 24 (26)
T ss_pred chHHHHHHHHHHHHHHHHHhccc
Confidence 46889999999999998877654
No 87
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=84.41 E-value=0.95 Score=36.93 Aligned_cols=18 Identities=44% Similarity=0.427 Sum_probs=15.3
Q ss_pred CCChhHHHHHHHhhhhhh
Q 010326 39 GFDNEEIDRAIALSLVEV 56 (513)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~ 56 (513)
+.+.|||.|||+|||-|-
T Consensus 9 ~~eDeDLkrAieLSL~Es 26 (81)
T 1q0v_A 9 EDEEELIRKAIELSLKES 26 (81)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred cCchHHHHHHHHHhHHHH
Confidence 567899999999999554
No 88
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=83.51 E-value=0.21 Score=42.76 Aligned_cols=104 Identities=19% Similarity=0.429 Sum_probs=64.8
Q ss_pred cccCCCCCCCCCc------ceeecCCccccccccccc--cCcccccCCCCcCCCCccceeeecccccccccCCCcccCCC
Q 010326 187 FRCHSCNLPITDV------EFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGT 258 (513)
Q Consensus 187 FrCs~C~~~L~~~------~F~~~dG~pYCk~CY~~~--f~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~C 258 (513)
+.|..|...+... .....=|..||..|..+. ....|..|++.+.......+ +. ...-
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l-~i--------------~~~~ 72 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI-YI--------------GSGT 72 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC-BC--------------SSSS
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc-cc--------------CCCC
Confidence 5666666555331 133345778888887554 34589999999887541111 11 2234
Q ss_pred CccCCCCCcCCC----CCceEEccCCcccccccccccccCCCCCcccchHH
Q 010326 259 PRCCSCERMEPR----DTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (513)
Q Consensus 259 F~C~~C~r~l~~----g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~I 305 (513)
+.|..|...+.. +...+...=|..||..|..+.+.....|--|..+|
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 778888876532 22224556788999999987666566777777544
No 89
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=81.59 E-value=0.21 Score=41.99 Aligned_cols=33 Identities=18% Similarity=0.049 Sum_probs=27.5
Q ss_pred cccccCCCCeeeeeccccccccccceeeeEeee
Q 010326 363 RRPRIGAGYRLIDMITEPYRLIRRCEVTAILIL 395 (513)
Q Consensus 363 ~~~~~~~G~rilei~~~p~~~~~~~eV~~Il~l 395 (513)
+...|++||.|++|||+++...++.+|..+|..
T Consensus 43 r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~ 75 (95)
T 3gge_A 43 SVKTICVGDHIESINGENIVGWRHYDVAKKLKE 75 (95)
T ss_dssp HCTTCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred hcCCCCCCCEEEEECCEEccCCCHHHHHHHHHh
Confidence 567899999999999999988888777766544
No 90
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=79.81 E-value=0.18 Score=43.06 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=28.6
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
.|.+||+|++|||+++......++..+|...|-+..|
T Consensus 67 ~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l 103 (117)
T 1ujd_A 67 KLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEI 103 (117)
T ss_dssp SCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEE
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEE
Confidence 3889999999999999887766666666555655555
No 91
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=79.21 E-value=0.16 Score=43.96 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=30.3
Q ss_pred ccCCCCeeeeecccccc-ccccceeeeEeeecCchhhhhhhhhhccc
Q 010326 366 RIGAGYRLIDMITEPYR-LIRRCEVTAILILYGLPRLLTGSILAHEM 411 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~-~~~~~eV~~Il~l~glP~~L~gsilaHE~ 411 (513)
+|.+||+|++|||.++. .....++..+|.-.|-+..| +|.+++
T Consensus 72 ~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l---~v~r~~ 115 (128)
T 2db5_A 72 RLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRL---IVAREP 115 (128)
T ss_dssp CCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEEE---EEEECC
T ss_pred CCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCeEEE---EEEcCC
Confidence 48899999999999997 66666666655545555555 444443
No 92
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=75.77 E-value=0.9 Score=30.09 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=19.7
Q ss_pred CcccccCCCCcCCCCccceeeecccccccccCCCcccCCCC
Q 010326 219 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP 259 (513)
Q Consensus 219 ~pkC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF 259 (513)
.++|..|++.+...+ .+.+.+.. ||..||
T Consensus 3 ~~~C~~C~k~Vy~~E--k~~~~g~~----------~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE--KVNCLDKF----------WHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGG--CCCSSSSC----------CCGGGC
T ss_pred CCcCCccCCEEecce--eEEECCeE----------ecccCC
Confidence 468999999987643 34455554 377776
No 93
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=75.52 E-value=0.25 Score=41.11 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=25.0
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
|.+||+|++|||+++......++..++.-.|-+..|
T Consensus 52 L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l 87 (105)
T 2awx_A 52 LQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYL 87 (105)
T ss_dssp CCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 889999999999999765555544444434545444
No 94
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=74.76 E-value=0.24 Score=42.39 Aligned_cols=42 Identities=17% Similarity=-0.018 Sum_probs=29.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeec----Cchhhhhhhhhhcc
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILY----GLPRLLTGSILAHE 410 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~----glP~~L~gsilaHE 410 (513)
.|.+||+|++|||.++....+.++..+|... |-+..| ++.+.
T Consensus 61 gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l---~v~r~ 106 (118)
T 1v6b_A 61 GVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDL---VVAVC 106 (118)
T ss_dssp SSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEE---EEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEE---EEEeC
Confidence 6889999999999999876666655554432 455555 44443
No 95
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=72.75 E-value=0.29 Score=39.59 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=27.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
.|++||+|++|||+++......++..+|.-.+-...|
T Consensus 39 ~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L 75 (88)
T 3e17_A 39 NLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQL 75 (88)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 4889999999999999777666666665555444444
No 96
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=72.28 E-value=0.28 Score=39.87 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=27.2
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 400 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 400 (513)
-+.+||+|++|||+++....+.+|..+|...|-..
T Consensus 40 Gl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V 74 (82)
T 1r6j_A 40 GLLTEHNICEINGQNVIGLKDSQIADILSTSGTVV 74 (82)
T ss_dssp TCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEE
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEE
Confidence 35699999999999999888888777666544433
No 97
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=72.12 E-value=0.34 Score=41.87 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=28.9
Q ss_pred cccccCCCCeeeeeccccccccccceeeeEeeec--Cchhhh
Q 010326 363 RRPRIGAGYRLIDMITEPYRLIRRCEVTAILILY--GLPRLL 402 (513)
Q Consensus 363 ~~~~~~~G~rilei~~~p~~~~~~~eV~~Il~l~--glP~~L 402 (513)
....|++||+|++||++++....+.++..+|.-. |-+..|
T Consensus 46 ~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L 87 (113)
T 3soe_A 46 WCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPL 87 (113)
T ss_dssp GSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEE
T ss_pred HhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEE
Confidence 3567899999999999999987776666655432 444444
No 98
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=70.98 E-value=1.3 Score=42.31 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=15.8
Q ss_pred ccCCCCeeeeeccccccc
Q 010326 366 RIGAGYRLIDMITEPYRL 383 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~ 383 (513)
.|.+||+|+.|||.++..
T Consensus 50 GL~~GD~Il~VNG~~V~~ 67 (216)
T 2krg_A 50 GLRAQDRIVEVNGVCMEG 67 (216)
T ss_dssp TCCTTCBCCEETTEECTT
T ss_pred CCCCCCEEEEECCEECCC
Confidence 378999999999999873
No 99
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=70.96 E-value=0.4 Score=39.99 Aligned_cols=31 Identities=3% Similarity=-0.031 Sum_probs=23.0
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecC
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYG 397 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~g 397 (513)
|.+||+|++|||+++......++..+|...+
T Consensus 55 L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~ 85 (97)
T 2ejy_A 55 LHVGDEILEINGTNVTNHSVDQLQKAMKETK 85 (97)
T ss_dssp CCTTCEEEEETTBCCCSSCSHHHHHHHHHCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 7799999999999998655556555544333
No 100
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=70.83 E-value=0.28 Score=39.11 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=22.9
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecC
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYG 397 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~g 397 (513)
.|.+||+|++|||+++......++..++...|
T Consensus 46 gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 77 (87)
T 4e34_A 46 GLHVGDAILAVNGVNLRDTKHKEAVTILSQQR 77 (87)
T ss_dssp CCCTTEEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 67899999999999997665555444443333
No 101
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=70.01 E-value=0.44 Score=40.38 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=25.9
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
.|.+||+|++|||.++......++..+|...|-+..|
T Consensus 68 ~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l 104 (117)
T 2ehr_A 68 ALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVF 104 (117)
T ss_dssp SCCTTCEEEEESSCBCTTCCHHHHHHHHHTSCSSEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 3889999999999999876665554444444444444
No 102
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=69.92 E-value=0.39 Score=40.28 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=26.0
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
|.+||+|++||++++......++..+|...|-+..|
T Consensus 63 L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g~~v~l 98 (111)
T 1uju_A 63 LRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTV 98 (111)
T ss_dssp CCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 889999999999999876666655554444544444
No 103
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=69.33 E-value=0.43 Score=40.70 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=27.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
.|.+||+|++|||+++......++..+|...|-+..|
T Consensus 60 ~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l 96 (117)
T 1v62_A 60 ALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRL 96 (117)
T ss_dssp CCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 3789999999999999776666666665544544444
No 104
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=68.83 E-value=0.39 Score=38.59 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=17.5
Q ss_pred ccCCCCeeeeecccccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLIRR 386 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~ 386 (513)
-|.+||+|+.|||.++.....
T Consensus 49 Gl~~GD~I~~vng~~v~~~~~ 69 (91)
T 1m5z_A 49 GLKPYDRLLQVNHVRTRDFDC 69 (91)
T ss_dssp TCCTTCEEEEETTEECTTCCH
T ss_pred CCCCCCEEEEECCEECCCCCH
Confidence 478999999999999876543
No 105
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=71.60 E-value=1 Score=38.19 Aligned_cols=37 Identities=14% Similarity=-0.006 Sum_probs=28.2
Q ss_pred cccCCCCeeeeeccccccccccceeeeEeeecCchhh
Q 010326 365 PRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRL 401 (513)
Q Consensus 365 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~ 401 (513)
..|.+||+|++|||.++......++..+|...+-...
T Consensus 70 aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~ 106 (112)
T 2lob_A 70 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE 106 (112)
Confidence 4578999999999999987777777777665543333
No 106
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=68.04 E-value=0.42 Score=39.02 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=23.8
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCch
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLP 399 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP 399 (513)
.|.+||+|++|||+++......++..+|...|-+
T Consensus 48 GL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~ 81 (90)
T 1y7n_A 48 GVRVGHRIIEINGQSVVATPHEKIVHILSNAVGE 81 (90)
T ss_dssp TCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 4789999999999999755555555554433433
No 107
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=67.97 E-value=0.43 Score=37.71 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=21.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeEe
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAIL 393 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il 393 (513)
-|.+||+|++|||.++......++..+|
T Consensus 40 Gl~~GD~I~~ing~~v~~~~~~~~~~~l 67 (83)
T 2kv8_A 40 GLRAGDQILAVNEINVKKASHEDVVKLI 67 (83)
T ss_dssp TCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4789999999999999876555554443
No 108
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=67.86 E-value=0.41 Score=38.86 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=20.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
.|.+||+|++|||.++......++..+
T Consensus 47 ~L~~GD~I~~vng~~v~~~~~~~~~~~ 73 (95)
T 2vwr_A 47 RLSSNDRVLAINGHDLKYGTPELAAQI 73 (95)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 388999999999999976544443333
No 109
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=67.84 E-value=0.54 Score=38.98 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=25.5
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
|.+||+|++||+.++......++..+|...|-+..|
T Consensus 57 L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l 92 (105)
T 1wha_A 57 LQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIAL 92 (105)
T ss_dssp CCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 789999999999999876555555554434444444
No 110
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=67.63 E-value=0.59 Score=40.18 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=25.8
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 400 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 400 (513)
+|.+||+|++|||+++......++..+|.-.|-+.
T Consensus 71 ~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v 105 (118)
T 3b76_A 71 RIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSI 105 (118)
T ss_dssp SSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 48899999999999998777666655554444433
No 111
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.50 E-value=0.43 Score=38.46 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=20.5
Q ss_pred ccCCCCeeeeeccccccccccceeeeEe
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAIL 393 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il 393 (513)
.|.+||+|++||++++......++..++
T Consensus 48 gl~~GD~I~~vng~~v~~~~~~~~~~~~ 75 (93)
T 2dkr_A 48 GLKRGDQLLSVNGVSVEGEQHEKAVELL 75 (93)
T ss_dssp CCCTTCBEEEETTEECTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 3789999999999999865444444333
No 112
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=67.34 E-value=0.48 Score=38.46 Aligned_cols=36 Identities=17% Similarity=0.051 Sum_probs=23.9
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
|.+||+|+.|||+++......++..+|...|-+..|
T Consensus 52 l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l 87 (96)
T 1d5g_A 52 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHL 87 (96)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 889999999999999865544444443333433333
No 113
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=67.17 E-value=0.49 Score=39.11 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=26.3
Q ss_pred cccCCCCeeeeeccccccccccceeeeEeee--cCchhhh
Q 010326 365 PRIGAGYRLIDMITEPYRLIRRCEVTAILIL--YGLPRLL 402 (513)
Q Consensus 365 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~l--~glP~~L 402 (513)
..|.+||+|++|||+++......++..+|.. .|-+..|
T Consensus 54 ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l 93 (101)
T 2yt7_A 54 GALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTL 93 (101)
T ss_dssp SSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEE
Confidence 4578999999999999966566666655544 3444443
No 114
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=67.13 E-value=0.47 Score=38.03 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=20.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
-|.+||+|++|||.+++.....++..+
T Consensus 44 Gl~~GD~I~~ing~~v~~~~~~~~~~~ 70 (89)
T 2q3g_A 44 GVAVGDWVLSIDGENAGSLTHIEAQNK 70 (89)
T ss_dssp TCCTTCEEEEETTEEGGGCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 478999999999999986544444333
No 115
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=67.08 E-value=0.43 Score=38.80 Aligned_cols=36 Identities=25% Similarity=0.192 Sum_probs=24.6
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
|.+||+|+.|||.++......++..+|...|-+..|
T Consensus 51 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 86 (97)
T 2jil_A 51 IKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAAL 86 (97)
T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 789999999999999875555554444334444433
No 116
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=66.93 E-value=0.47 Score=40.54 Aligned_cols=37 Identities=24% Similarity=0.172 Sum_probs=25.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
+|.+||+|++|||+++......++..+|.-.|-+..|
T Consensus 72 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l 108 (117)
T 2byg_A 72 RLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYL 108 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 3889999999999999865555554444433433333
No 117
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=66.48 E-value=0.54 Score=37.85 Aligned_cols=37 Identities=11% Similarity=-0.115 Sum_probs=24.9
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
-|.+||+|+.|||+++......++..+|...|-+..|
T Consensus 44 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 80 (91)
T 2vsp_A 44 GLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTL 80 (91)
T ss_dssp TCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3789999999999999755555555544433444433
No 118
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=66.30 E-value=0.54 Score=39.01 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=20.2
Q ss_pred cCCCCeeeeeccccccccccceeeeE
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
|++||+|++|||.++......++..+
T Consensus 63 L~~GD~Il~ing~~v~~~~~~~~~~~ 88 (107)
T 3nfk_A 63 LNEGDQVVLINGRDIAEHTHDQVVLF 88 (107)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred cCCCCEEEEECCEECCCCCHHHHHHH
Confidence 88999999999999886655444433
No 119
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=66.30 E-value=0.54 Score=43.23 Aligned_cols=37 Identities=11% Similarity=-0.055 Sum_probs=26.4
Q ss_pred cccCCCCeeeeeccccccccccceeeeEeeecCchhh
Q 010326 365 PRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRL 401 (513)
Q Consensus 365 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~ 401 (513)
.+|++||+|++|||+++......++..+|.-.|-+..
T Consensus 128 G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g~~v~ 164 (170)
T 3egg_C 128 GRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVR 164 (170)
T ss_dssp CCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence 3489999999999999987766665555444443333
No 120
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=66.10 E-value=0.47 Score=39.03 Aligned_cols=36 Identities=11% Similarity=0.020 Sum_probs=23.4
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
|.+||+|++|||.++......++..++...|-+..|
T Consensus 53 L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l 88 (102)
T 2i1n_A 53 LGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRL 88 (102)
T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 889999999999999765544443333333333333
No 121
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=66.06 E-value=0.48 Score=38.88 Aligned_cols=33 Identities=6% Similarity=0.186 Sum_probs=22.5
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCch
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLP 399 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP 399 (513)
|.+||+|++|||.++......++..++...|-+
T Consensus 56 L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~ 88 (101)
T 2jik_A 56 LQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYA 88 (101)
T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHHTCCSE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence 889999999999999876544444433323333
No 122
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=65.86 E-value=0.42 Score=40.64 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=28.9
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeee---cCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILIL---YGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l---~glP~~L 402 (513)
-|.+||+|+.|||.++......+|..+|.. .|.|+.|
T Consensus 56 GL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~L 95 (101)
T 3qik_A 56 GLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRL 95 (101)
T ss_dssp TCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEE
Confidence 478999999999999976667777777665 3666665
No 123
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.78 E-value=0.43 Score=40.66 Aligned_cols=42 Identities=10% Similarity=0.212 Sum_probs=28.5
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchhhhhhhhhhccc
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEM 411 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L~gsilaHE~ 411 (513)
|.+||+|++||++++......++..+|...|-+..| +|.++.
T Consensus 66 L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l---~v~R~~ 107 (120)
T 2eno_A 66 LQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSL---RVQHRL 107 (120)
T ss_dssp SCTTCEEEEETTEECCSCCHHHHHHHHHHHCSEEEE---EEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE---EEEeCC
Confidence 889999999999999876655555444434545545 444444
No 124
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=65.64 E-value=0.53 Score=39.07 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=24.6
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
+|.+||+|++||++++......++..++...|-+..|
T Consensus 56 ~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l 92 (106)
T 3axa_A 56 RLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTL 92 (106)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 3889999999999999865554444443334444443
No 125
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=65.53 E-value=0.55 Score=39.78 Aligned_cols=37 Identities=11% Similarity=0.015 Sum_probs=26.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
.|.+||+|++|||.++......++..+|...|-+..|
T Consensus 62 gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 98 (117)
T 2csj_A 62 LLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAI 98 (117)
T ss_dssp HBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEE
T ss_pred cCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEE
Confidence 4789999999999999876555554444445555555
No 126
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=65.48 E-value=0.5 Score=39.34 Aligned_cols=36 Identities=6% Similarity=-0.090 Sum_probs=24.0
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
|.+||+|+.||+.++......++..++.-.|-+..|
T Consensus 59 L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l 94 (107)
T 1wf8_A 59 IQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 94 (107)
T ss_dssp SCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEE
Confidence 889999999999999865554444433333444433
No 127
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=65.46 E-value=0.48 Score=38.96 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=23.3
Q ss_pred ccccCCCCeeeeeccccccccccceeeeEee
Q 010326 364 RPRIGAGYRLIDMITEPYRLIRRCEVTAILI 394 (513)
Q Consensus 364 ~~~~~~G~rilei~~~p~~~~~~~eV~~Il~ 394 (513)
...|.+||+|++||++++......++..+|.
T Consensus 45 ~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~ 75 (96)
T 1ujv_A 45 CPGLCEGDLIVEINQQNVQNLSHTEVVDILK 75 (96)
T ss_dssp STTCCSSCEEEEETTEECSSCCHHHHHHHHH
T ss_pred cCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 3457899999999999998765555555444
No 128
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=65.43 E-value=0.57 Score=37.56 Aligned_cols=31 Identities=26% Similarity=0.241 Sum_probs=22.7
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecC
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYG 397 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~g 397 (513)
|.+||+|++|||+++......++..+|...|
T Consensus 46 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 76 (90)
T 2he4_A 46 LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 76 (90)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 7899999999999998765555544444333
No 129
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=64.91 E-value=0.62 Score=38.88 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=24.1
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
|.+||+|+.||+.++......++..++...|-+..|
T Consensus 58 L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l 93 (113)
T 1um7_A 58 LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 93 (113)
T ss_dssp CCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEE
Confidence 889999999999999876544444433333444444
No 130
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=64.28 E-value=0.58 Score=39.27 Aligned_cols=37 Identities=11% Similarity=-0.023 Sum_probs=24.9
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
+|.+||+|+.|||.++......++..++.-.|-+..|
T Consensus 53 ~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l 89 (113)
T 2g5m_B 53 RIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRF 89 (113)
T ss_dssp CSCTTCBEEEETTEECSSCCHHHHHHHHHHSCSSCEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEE
Confidence 3789999999999999865554444443334544444
No 131
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=64.18 E-value=0.36 Score=40.03 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=20.1
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
.|.+||+|++||++++......++..+
T Consensus 52 ~L~~GD~Il~ing~~v~~~~~~~~~~~ 78 (103)
T 1uep_A 52 RLHPGDELVYVDGIPVAGKTHRYVIDL 78 (103)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 388999999999999976544444433
No 132
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=64.15 E-value=0.6 Score=38.65 Aligned_cols=38 Identities=5% Similarity=-0.010 Sum_probs=26.9
Q ss_pred cccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 365 PRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 365 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
..|.+||+|+.||++++......++..+|...|-+..|
T Consensus 45 aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 82 (103)
T 1v5l_A 45 ANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCL 82 (103)
T ss_dssp GTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEEC
T ss_pred cCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 34789999999999999875555655555444555544
No 133
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=63.90 E-value=0.6 Score=37.76 Aligned_cols=28 Identities=29% Similarity=0.234 Sum_probs=21.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeEe
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAIL 393 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il 393 (513)
.|.+||+|++|||.++......++..+|
T Consensus 46 ~L~~GD~I~~ing~~v~~~~~~~~~~~l 73 (93)
T 3o46_A 46 LIHVGDELREVNGIPVEDKRPEEIIQIL 73 (93)
T ss_dssp CCCTTCEEEEETTEESTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4889999999999999665555554444
No 134
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=63.84 E-value=0.56 Score=38.69 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=24.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
.|.+||+|++||++++......++..++...|-+..|
T Consensus 59 gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l 95 (103)
T 1n7t_A 59 LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVEL 95 (103)
T ss_dssp SCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHhhcCCCeEEE
Confidence 6889999999999999765544443333333444333
No 135
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=63.77 E-value=0.64 Score=36.77 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=19.6
Q ss_pred cCCCCeeeeeccccccccccceeeeE
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
|.+||+|++|||.++......++..+
T Consensus 44 l~~GD~I~~vng~~v~~~~~~~~~~~ 69 (85)
T 2i04_A 44 METGDVIVSVNDTCVLGHTHAQVVKI 69 (85)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHH
Confidence 78999999999999976444444433
No 136
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=67.32 E-value=1.5 Score=38.45 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=18.9
Q ss_pred CCCCCChhHHHHHHHhhhhhhhh
Q 010326 36 DSSGFDNEEIDRAIALSLVEVDQ 58 (513)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ 58 (513)
+.+..+++||-+||||||.|..+
T Consensus 90 dlt~d~KDDLQ~AIALSLqES~~ 112 (129)
T 2lva_A 90 DLTHDNKDDLQAAIALSLLESPK 112 (129)
Confidence 45555799999999999988765
No 137
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=63.28 E-value=0.61 Score=39.98 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=24.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
.|.+||+|++||++++......++..++.-.+-+..|
T Consensus 69 ~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l 105 (124)
T 2daz_A 69 RMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKL 105 (124)
T ss_dssp CCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 3889999999999999765554443333333333333
No 138
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=62.94 E-value=0.59 Score=37.90 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=23.8
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
.|.+||+|++||++++......++..++.-.|-+..|
T Consensus 51 gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l 87 (95)
T 1mfg_A 51 LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVEL 87 (95)
T ss_dssp TCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEE
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHhhcCCCeEEE
Confidence 5889999999999999765544433333333444333
No 139
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.79 E-value=0.62 Score=38.43 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=18.8
Q ss_pred cCCCCeeeeeccccccccccceee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVT 390 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~ 390 (513)
|++||+|+.||+.++......++.
T Consensus 57 l~~GD~I~~vng~~v~~~~~~~~~ 80 (104)
T 2djt_A 57 LEVGDLVLHINGESTQGLTHAQAV 80 (104)
T ss_dssp CCTTCBEEEETTEECTTCCHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHH
Confidence 789999999999998765444433
No 140
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=62.77 E-value=0.68 Score=42.01 Aligned_cols=37 Identities=14% Similarity=0.032 Sum_probs=26.4
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
+|.+||+|++||++|+......++..+|...+-+..|
T Consensus 148 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l 184 (196)
T 3gsl_A 148 RLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYL 184 (196)
T ss_dssp CCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEEEE
T ss_pred CCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeEEE
Confidence 3899999999999999876555555555444444444
No 141
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=62.65 E-value=0.64 Score=37.90 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=20.0
Q ss_pred cCCCCeeeeeccccccccccceeeeEe
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAIL 393 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il 393 (513)
|.+||+|+.|||.++......++..+|
T Consensus 49 l~~GD~I~~vng~~v~~~~~~~~~~~l 75 (97)
T 1n7e_A 49 IHIGDRILAINSSSLKGKPLSEAIHLL 75 (97)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 789999999999998754444444433
No 142
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=62.64 E-value=0.63 Score=39.30 Aligned_cols=25 Identities=4% Similarity=0.108 Sum_probs=18.8
Q ss_pred cCCCCeeeeecccccc-ccccceeee
Q 010326 367 IGAGYRLIDMITEPYR-LIRRCEVTA 391 (513)
Q Consensus 367 ~~~G~rilei~~~p~~-~~~~~eV~~ 391 (513)
|++||+|++|||.++. .....++..
T Consensus 68 l~~GD~Il~ing~~v~~~~~~~~~~~ 93 (117)
T 2o2t_A 68 LKETDQILAINGQALDQTITHQQAIS 93 (117)
T ss_dssp CCTTCEEEEETTEECCTTSCHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCCHHHHHH
Confidence 8899999999999997 444434333
No 143
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=62.33 E-value=0.67 Score=38.75 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=22.5
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILIL 395 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l 395 (513)
.|.+||+|+.|||.++......++..+|..
T Consensus 62 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 91 (108)
T 2d92_A 62 GLLPGDRLVSVNEYCLDNTSLAEAVEILKA 91 (108)
T ss_dssp CCCTTCEEEEESSCBCTTCCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 388999999999999987655555554443
No 144
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=62.27 E-value=1.3 Score=35.69 Aligned_cols=30 Identities=7% Similarity=-0.012 Sum_probs=22.5
Q ss_pred cccCCCCeeeeeccccccccccceeeeEee
Q 010326 365 PRIGAGYRLIDMITEPYRLIRRCEVTAILI 394 (513)
Q Consensus 365 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~ 394 (513)
..|++||+|++|||+++......++..+|.
T Consensus 42 agL~~GD~I~~Ing~~v~~~~~~~~~~~l~ 71 (88)
T 1kwa_A 42 GTLHVGDEIREINGISVANQTVEQLQKMLR 71 (88)
T ss_dssp TCCCTTCEEEEETTEEGGGSCHHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence 457899999999999998655555554443
No 145
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=62.26 E-value=0.56 Score=38.46 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=18.8
Q ss_pred cCCCCeeeeeccccccccccceee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVT 390 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~ 390 (513)
|.+||+|++|||.++......++.
T Consensus 55 l~~GD~I~~vng~~v~~~~~~~~~ 78 (103)
T 1wfv_A 55 MRVGDQIIEINGESTRDMTHARAI 78 (103)
T ss_dssp SCTTCEEEEETTEECSSCCHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHH
Confidence 789999999999998765444433
No 146
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=62.11 E-value=0.55 Score=38.97 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=26.6
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
.|.+||+|++|||+++......++..+|...+-...|
T Consensus 53 gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~l 89 (103)
T 2dc2_A 53 GLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEF 89 (103)
T ss_dssp CCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEE
Confidence 6789999999999999876666665555444433333
No 147
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=61.93 E-value=0.7 Score=38.59 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=18.3
Q ss_pred ccCCCCeeeeeccccccccccce
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCE 388 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~e 388 (513)
+|++||+|++|||+++......+
T Consensus 50 ~L~~GD~Il~Vng~~v~~~~~~~ 72 (106)
T 4amh_A 50 KLQIGDKLLAVNNVALEEVTHEE 72 (106)
T ss_dssp CCCTTCEEEEETTEECSSCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 48899999999999987654443
No 148
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=61.85 E-value=1.1 Score=37.83 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=24.4
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
-|.+||+|+.|||.++......++..+|...|-+..|
T Consensus 55 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 91 (114)
T 2edz_A 55 GLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL 91 (114)
T ss_dssp TCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3789999999999999875444444443333444444
No 149
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=61.72 E-value=0.65 Score=37.31 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=19.8
Q ss_pred cCCCCeeeeeccccccccccceeeeE
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
|.+||+|++|||.++......++..+
T Consensus 48 L~~GD~I~~vng~~v~~~~~~~~~~~ 73 (92)
T 2qg1_A 48 LMQGDQILMVNGEDVRNATQEAVAAL 73 (92)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHH
Confidence 88999999999999976544444433
No 150
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=61.71 E-value=1.1 Score=37.44 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=23.6
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILIL 395 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l 395 (513)
+|.+||+|++|||.++......++..+|..
T Consensus 50 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 79 (103)
T 1ufx_A 50 QLKVGHVILEVNGLTLRGKEHREAARIIAE 79 (103)
T ss_dssp SSCTTCBCCEETTEECTTCBHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHH
Confidence 488999999999999987776666555443
No 151
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=61.51 E-value=0.66 Score=38.71 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=20.9
Q ss_pred cCCCCeeeeeccccccccccceeeeEee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILI 394 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~ 394 (513)
|.+||+|++|||+++......++..+|.
T Consensus 58 l~~GD~I~~ing~~v~~~~~~~~~~~l~ 85 (111)
T 2koj_A 58 LKAGDRLIEVNGVDLAGKSQEEVVSLLR 85 (111)
T ss_dssp SCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 7899999999999997654445444443
No 152
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=61.46 E-value=0.75 Score=38.24 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=22.7
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchh
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 400 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 400 (513)
|.+||+|+.||+.++......++..++...|-+.
T Consensus 61 L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v 94 (108)
T 1q7x_A 61 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVV 94 (108)
T ss_dssp CCSSCEEEEETTEECBSCTTSHHHHHHHHTTSEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 8899999999999998555444433333333333
No 153
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=61.42 E-value=0.58 Score=37.55 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=20.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
.|.+||+|++||++++......++..+
T Consensus 48 gl~~GD~I~~ing~~v~~~~~~~~~~~ 74 (90)
T 1qav_A 48 ALFVGDAILSVNGEDLSSATHDEAVQA 74 (90)
T ss_dssp CCCTTEEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 578999999999999986554444333
No 154
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=61.32 E-value=1.3 Score=37.15 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=23.3
Q ss_pred cccCCCCeeeeeccccccccccceeeeEee
Q 010326 365 PRIGAGYRLIDMITEPYRLIRRCEVTAILI 394 (513)
Q Consensus 365 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~ 394 (513)
.+|.+||+|++|||.++....+.++..+|.
T Consensus 58 G~l~~GD~Il~Vng~~~~~~~~~~~~~~l~ 87 (109)
T 1wi4_A 58 GRLKPGDQLVSINKESMIGVSFEEAKSIIT 87 (109)
T ss_dssp CSCCTTCBEEEETTSCCTTCCHHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 348899999999999998766666655543
No 155
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=61.10 E-value=0.68 Score=37.65 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=19.5
Q ss_pred cCCCCeeeeeccccccccccceeee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTA 391 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~ 391 (513)
|.+||+|+.|||.++......++..
T Consensus 56 L~~GD~I~~ing~~v~~~~~~~~~~ 80 (98)
T 1ihj_A 56 LKVGDRILSLNGKDVRNSTEQAVID 80 (98)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHH
Confidence 8899999999999998764444433
No 156
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=61.04 E-value=0.73 Score=38.83 Aligned_cols=36 Identities=11% Similarity=0.249 Sum_probs=25.1
Q ss_pred cccCCCCeeeeeccccccccccceeeeEeeecCchh
Q 010326 365 PRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 400 (513)
Q Consensus 365 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 400 (513)
..|.+||+|+.||+.++......++..+|...|.+.
T Consensus 60 agL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v 95 (114)
T 1uew_A 60 AKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSV 95 (114)
T ss_dssp SSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 457899999999999998765555555544334333
No 157
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=61.03 E-value=0.68 Score=36.89 Aligned_cols=27 Identities=7% Similarity=0.004 Sum_probs=20.1
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
-|.+||+|+.||+.++......++..+
T Consensus 44 Gl~~GD~I~~ing~~v~~~~~~~~~~~ 70 (88)
T 2uzc_A 44 NVRIGDVVLSIDGINAQGMTHLEAQNK 70 (88)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 378999999999999887644444333
No 158
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=60.93 E-value=0.7 Score=36.46 Aligned_cols=26 Identities=8% Similarity=0.089 Sum_probs=19.8
Q ss_pred ccCCCCeeeeeccccccccccceeee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTA 391 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~ 391 (513)
.|.+||+|++|||.++......++..
T Consensus 42 Gl~~GD~I~~vng~~v~~~~~~~~~~ 67 (85)
T 1rgw_A 42 QLSQGDLVVAIDGVNTDTMTHLEAQN 67 (85)
T ss_dssp SCCCCSBEEEETTEECTTCCHHHHHH
T ss_pred CCCCCCEEEEECCEECCCcCHHHHHH
Confidence 47899999999999988764444433
No 159
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=60.74 E-value=1.1 Score=37.41 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=16.8
Q ss_pred cCCCCeeeeecccccccccc
Q 010326 367 IGAGYRLIDMITEPYRLIRR 386 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~ 386 (513)
|.+||+|++||+.++.....
T Consensus 55 L~~GD~I~~vng~~v~~~~~ 74 (110)
T 1um1_A 55 LSLGDRILEVNGSSLLGLGY 74 (110)
T ss_dssp CCTTCEEEEESSCBCSSCCH
T ss_pred CCCCCEEEEECCEECCCCCH
Confidence 88999999999999975433
No 160
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=60.56 E-value=0.62 Score=37.81 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=23.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 400 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 400 (513)
-|.+||.|++|||+++......++..+|...|-+.
T Consensus 47 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v 81 (96)
T 2v90_A 47 GMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCV 81 (96)
T ss_dssp TCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence 37899999999999998754444444433333333
No 161
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=60.40 E-value=0.67 Score=38.77 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=20.4
Q ss_pred cCCCCeeeeeccccccccccceeeeEe
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAIL 393 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il 393 (513)
|.+||+|+.|||.++......++..+|
T Consensus 57 l~~GD~I~~vng~~v~~~~~~~~~~~l 83 (111)
T 2dlu_A 57 LQTGDHILKIGGTNVQGMTSEQVAQVL 83 (111)
T ss_dssp CCSSCEEEEESSCCCTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 789999999999999865444444443
No 162
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=60.29 E-value=0.65 Score=38.13 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=23.8
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
|++||+|+.|||.++......++..++...|-+..|
T Consensus 54 l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l 89 (104)
T 3i4w_A 54 LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 89 (104)
T ss_dssp CCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 889999999999998765544444333334444444
No 163
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=60.12 E-value=0.89 Score=39.71 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=24.5
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 400 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 400 (513)
-|.+||+|++|||+++......++..+|...|-+.
T Consensus 82 GL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v 116 (132)
T 3l4f_D 82 GLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTL 116 (132)
T ss_dssp TCCTTCEEEEESSSBCTTSCHHHHHHHHHHTTTEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence 48899999999999998665555544444344433
No 164
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=59.79 E-value=0.77 Score=37.23 Aligned_cols=27 Identities=7% Similarity=0.111 Sum_probs=20.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
.|.+||+|++||++++......++..+
T Consensus 47 GL~~GD~I~~ing~~v~~~~~~~~~~~ 73 (94)
T 1vb7_A 47 DLRPGDIIVAINGQSAENMLHAEAQSK 73 (94)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 478999999999999987644444333
No 165
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.69 E-value=0.78 Score=37.52 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=19.4
Q ss_pred cccCCCCeeeeecccccccccccee
Q 010326 365 PRIGAGYRLIDMITEPYRLIRRCEV 389 (513)
Q Consensus 365 ~~~~~G~rilei~~~p~~~~~~~eV 389 (513)
..|.+||+|++||++++......++
T Consensus 46 agL~~GD~Il~ing~~v~~~~~~~~ 70 (96)
T 2edv_A 46 GKLFPGDQILQMNNEPAEDLSWERA 70 (96)
T ss_dssp TTSCTTCBEEEESSCBSTTCCHHHH
T ss_pred hCCCCCCEEEEECCEECCCCCHHHH
Confidence 3578999999999999976544443
No 166
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=59.68 E-value=0.78 Score=38.56 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=20.2
Q ss_pred cCCCCeeeeeccccccccccceeeeEe
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAIL 393 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il 393 (513)
|.+||+|+.||+.++......++..+|
T Consensus 62 L~~GD~I~~vng~~v~~~~~~~~~~~l 88 (116)
T 2dm8_A 62 LWAGDQILEVNGVDLRNSSHEEAITAL 88 (116)
T ss_dssp CCTTCEEEEETTEECSSSCHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 889999999999998765444444433
No 167
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.65 E-value=8.2 Score=32.53 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=28.8
Q ss_pred cccCCCCCCCCCcceeecCCccccccccccccCcccccCCCCcCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPT 231 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~C~~~I~~ 231 (513)
+.|..|...+..-.....=|..||..|....+...|..|+..+..
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 566666665544222213467888888777666778888887754
No 168
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=59.52 E-value=0.73 Score=38.17 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=21.1
Q ss_pred ccCCCCeeeeeccccccccccceeeeEe
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAIL 393 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il 393 (513)
.|.+||+|+.||+.++......++..+|
T Consensus 58 GL~~GD~I~~ing~~v~~~~~~~~~~~l 85 (104)
T 1wi2_A 58 GLQEGDQVLAVNDVDFQDIEHSKAVEIL 85 (104)
T ss_dssp TCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4789999999999999875555554443
No 169
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=59.50 E-value=1.4 Score=35.11 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=18.2
Q ss_pred cCCCCeeeeecccccccccccee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEV 389 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV 389 (513)
|.+||+|++|||.++......++
T Consensus 46 L~~GD~I~~ing~~v~~~~~~~~ 68 (90)
T 2q9v_A 46 LRSGDELISVDGTPVIGKSHQLV 68 (90)
T ss_dssp CCTTCEEEEETTEECTTSCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 78999999999999965444443
No 170
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=59.37 E-value=0.82 Score=37.23 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=22.2
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILIL 395 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l 395 (513)
-|.+||+|++||+.++......++..+|..
T Consensus 54 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~ 83 (96)
T 2ego_A 54 GLTPGDTIASVNGLNVEGIRHREIVDIIKA 83 (96)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 378999999999999987655555544433
No 171
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=58.77 E-value=1.6 Score=37.76 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=24.1
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeec
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILY 396 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~ 396 (513)
.|.+||+|++|||.++....+.++..+|...
T Consensus 75 gL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 105 (130)
T 1i16_A 75 TVQPGDEILQLGGTAMQGLTRFEAWNIIKAL 105 (130)
T ss_dssp CCCTTCCEEECSSCBGGGSCHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 6889999999999999877666655554433
No 172
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=58.73 E-value=1.5 Score=36.62 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=22.9
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILIL 395 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l 395 (513)
+|.+||+|++|||+++......++..+|..
T Consensus 51 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 80 (108)
T 3cbz_A 51 RIEPGDMLLQVNDMNFENMSNDDAVRVLRD 80 (108)
T ss_dssp CCCTTCEEEEETTEETTSCCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 478999999999999987666665555443
No 173
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=58.42 E-value=0.78 Score=38.51 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=20.4
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
.|.+||+|++|||+++......++..+
T Consensus 43 ~L~~GD~Il~Ing~~v~~~~~~~~~~~ 69 (106)
T 2la8_A 43 KLQRGDIITKFNGDALEGLPFQVCYAL 69 (106)
T ss_dssp TCCTTCEEEEESSCBCSSSCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 378999999999999986554444333
No 174
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=58.32 E-value=0.84 Score=37.11 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=18.2
Q ss_pred cCCCCeeeeecccccccccccee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEV 389 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV 389 (513)
|.+||+|+.|||.++......++
T Consensus 49 l~~GD~I~~vng~~v~~~~~~~~ 71 (98)
T 2opg_A 49 LWAGDQILEVNGIDLRKATHDEA 71 (98)
T ss_dssp CCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 88999999999999876543333
No 175
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=57.99 E-value=0.85 Score=37.25 Aligned_cols=24 Identities=4% Similarity=-0.087 Sum_probs=18.9
Q ss_pred cCCCCeeeeeccccccccccceee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVT 390 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~ 390 (513)
|++||+|+.|||+++......++.
T Consensus 50 L~~GD~I~~Ing~~v~~~~~~~~~ 73 (96)
T 2qkv_A 50 LQRGDIITKFNGDALEGLPFQVSY 73 (96)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHH
Confidence 789999999999999865444433
No 176
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=57.82 E-value=0.88 Score=38.32 Aligned_cols=24 Identities=8% Similarity=0.267 Sum_probs=18.8
Q ss_pred cCCCCeeeeeccccccccccceee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVT 390 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~ 390 (513)
|.+||+|++|||+++......++.
T Consensus 68 L~~GD~Il~Vng~~v~~~~~~~~~ 91 (112)
T 2r4h_A 68 MRIGDEILEINGETTKNMKHSRAI 91 (112)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHH
Confidence 789999999999999765444433
No 177
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=57.82 E-value=0.83 Score=39.53 Aligned_cols=30 Identities=10% Similarity=0.074 Sum_probs=22.4
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILIL 395 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l 395 (513)
.|++||+|++|||+++......++..+|..
T Consensus 61 ~L~~GD~Il~vng~~v~~~~~~~~~~~l~~ 90 (129)
T 2kpk_A 61 KMETGDVIVSVNDTCVLGHTHAQVVKIFQS 90 (129)
T ss_dssp SCCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 388999999999999986655555554443
No 178
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=57.78 E-value=0.85 Score=36.27 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=20.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
.|.+||+|+.|||+++......++..+
T Consensus 43 GL~~GD~I~~ing~~v~~~~~~~~~~~ 69 (87)
T 2pa1_A 43 DLRPGDIIVAINGESAEGMLHAEAQSK 69 (87)
T ss_dssp TCCTTCEEEEETTEESTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 478999999999999987544444443
No 179
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=57.62 E-value=1.6 Score=37.90 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=21.8
Q ss_pred ccCCCCeeeeeccccccccccceeeeEee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILI 394 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~ 394 (513)
+|.+||+|++|||+++......++..+|.
T Consensus 83 ~L~~GD~Il~ing~~v~~~~~~~~~~~l~ 111 (131)
T 1wfg_A 83 HLRPGDEVLEWNGRLLQGATFEEVYNIIL 111 (131)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 48899999999999997665555544443
No 180
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=57.60 E-value=1.7 Score=36.16 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=21.7
Q ss_pred ccCCCCeeeeeccccccccccceeeeEe
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAIL 393 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il 393 (513)
-|++||+|++|||.++......++..+|
T Consensus 52 GL~~GD~Il~vng~~v~~~~~~~l~~~l 79 (94)
T 3kzd_A 52 GLKAGDEILEINNRAADALNSSMLKDFL 79 (94)
T ss_dssp TCCTTCEEEEETTEEGGGCCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4789999999999999876555554443
No 181
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=57.32 E-value=0.94 Score=37.50 Aligned_cols=35 Identities=9% Similarity=0.015 Sum_probs=24.6
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 400 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 400 (513)
-|++||+|++||++++......++..+|...|-+.
T Consensus 60 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v 94 (107)
T 3qe1_A 60 GVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKEL 94 (107)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHHCSSEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence 37899999999999998665555555544334433
No 182
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.12 E-value=0.9 Score=36.80 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=18.2
Q ss_pred ccCCCCeeeeeccccccccccce
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCE 388 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~e 388 (513)
-|.+||+|+.||++++......+
T Consensus 49 Gl~~GD~I~~ing~~v~~~~~~~ 71 (94)
T 2eeg_A 49 ALCPGDLIQAINGESTELMTHLE 71 (94)
T ss_dssp TCCTTCEEEEETTEETTTCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 47899999999999997653333
No 183
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.84 E-value=0.76 Score=39.57 Aligned_cols=37 Identities=19% Similarity=0.089 Sum_probs=24.9
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
-|.+||+|++||++++......++..+|...|-+..|
T Consensus 78 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 114 (126)
T 2yuy_A 78 GLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLEL 114 (126)
T ss_dssp TCCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3789999999999999755555555544433444333
No 184
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=56.65 E-value=3.6 Score=45.26 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=29.4
Q ss_pred hhhhccchhhHhhhcC--CCC-CCCcchhhHHHHHHHHHhhc
Q 010326 405 SILAHEMMHAWLRLKG--YPN-LRPDVEEGICQVLAHMWLES 443 (513)
Q Consensus 405 silaHE~~Hawl~l~g--~~~-L~~~~eEG~cq~~a~~wl~~ 443 (513)
.+||||+.|-|.. +- ... -...+-|||...++++|++.
T Consensus 297 ~viaHElAHqWfG-nlVT~~~W~dlWLnEGfAtY~e~~~~~~ 337 (632)
T 2xq0_A 297 DVIAHELAHSWSG-NLVTNCSWNHFWLNEGWTVYLERRIIGA 337 (632)
T ss_dssp HHHHHHHHHTTBT-TTEEESSGGGTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCccCCcchhhHHHHHHHHHHHHHHHH
Confidence 5999999999976 22 111 13478999999999999985
No 185
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=56.45 E-value=0.96 Score=38.73 Aligned_cols=29 Identities=7% Similarity=0.049 Sum_probs=21.7
Q ss_pred ccCCCCeeeeeccccccccccceeeeEee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILI 394 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~ 394 (513)
.|++||+|++|||+++......++..+|.
T Consensus 62 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 90 (123)
T 1ueq_A 62 KMETGDVIVYINEVCVLGHTHADVVKLFQ 90 (123)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 38899999999999997655555554443
No 186
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=56.39 E-value=1 Score=37.38 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=20.5
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
.|++||+|++||+.++......++..+
T Consensus 59 gL~~GD~Il~vng~~v~~~~~~~~~~~ 85 (107)
T 1uhp_A 59 GLQIHDRIIEVNGRDLSRATHDQAVEA 85 (107)
T ss_dssp CCCSSCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 588999999999999976555444333
No 187
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=56.37 E-value=1 Score=37.58 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=21.9
Q ss_pred ccCCCCeeeeeccccccccccceeeeEee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILI 394 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~ 394 (513)
-|.+||+|++|||.++....+.++..+|.
T Consensus 62 Gl~~GD~I~~vng~~v~~~~~~~~~~~l~ 90 (109)
T 1q3o_A 62 GLRMGDFLIEVNGQNVVKVGHRQVVNMIR 90 (109)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 47899999999999998765555544443
No 188
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=56.31 E-value=0.98 Score=36.32 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=18.3
Q ss_pred cCCCCeeeeecccccccccccee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEV 389 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV 389 (513)
|.+||+|+.||++++......++
T Consensus 52 l~~GD~I~~vng~~v~~~~~~~~ 74 (94)
T 2fe5_A 52 LQIGDRLLAVNNTNLQDVRHEEA 74 (94)
T ss_dssp CCTTCEEEEETTEECTTCBHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 78999999999999876544443
No 189
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=56.14 E-value=1.1 Score=38.57 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=21.6
Q ss_pred cCCCCeeeeeccccccccccceeeeEee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILI 394 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~ 394 (513)
|.+||+|++|||+++......++..+|.
T Consensus 78 L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 105 (123)
T 2iwq_A 78 LKPGDRIVEVDGMDLRDASHEQAVEAIR 105 (123)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 7899999999999998755555555443
No 190
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=55.85 E-value=0.74 Score=38.23 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=18.3
Q ss_pred cCCCCeeeeecccccccccccee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEV 389 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV 389 (513)
|.+||+|+.|||.++......++
T Consensus 63 l~~GD~I~~vng~~v~~~~~~~~ 85 (108)
T 2jre_A 63 IEPNDKILRVDDVNVQGMAQSDV 85 (108)
T ss_dssp CCSSEEEEEETTEECTTSCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 88999999999999976543333
No 191
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=55.84 E-value=3.1 Score=45.64 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=29.8
Q ss_pred hhhhhhccchhhHhh--hcC--C-------CC--CCCcchhhHHHHHHHHHhhc
Q 010326 403 TGSILAHEMMHAWLR--LKG--Y-------PN--LRPDVEEGICQVLAHMWLES 443 (513)
Q Consensus 403 ~gsilaHE~~Hawl~--l~g--~-------~~--L~~~~eEG~cq~~a~~wl~~ 443 (513)
+.++||||+.|.|-. +.. . ++ -...+-|||.+.++.+|+.+
T Consensus 267 ~~~liaHE~~H~W~g~~i~p~~~~~~d~~~~~~~~~lWl~EG~t~Y~~~l~~~r 320 (597)
T 4fgm_A 267 FLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHT 320 (597)
T ss_dssp HHHHHHHHHHHTTBTTTBCBGGGSSCCCSSCCCCSTHHHHTHHHHHHHHHHHHH
T ss_pred hhhhHhhhhheeecccccccccccccccccccccccchhhhhHHHHHHHHHHHH
Confidence 357999999999955 111 0 11 13477999999999999974
No 192
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=55.60 E-value=0.85 Score=39.48 Aligned_cols=29 Identities=21% Similarity=0.096 Sum_probs=21.8
Q ss_pred ccCCCCeeeeeccccccccccceeeeEee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILI 394 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~ 394 (513)
+|++||+|+.|||.++....+.++..+|.
T Consensus 73 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 101 (127)
T 1wg6_A 73 RLRMNDQLIAVNGETLLGKSNHEAMETLR 101 (127)
T ss_dssp TSCSCCBEEEETTEESTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 48899999999999988766555444443
No 193
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=55.52 E-value=0.98 Score=41.64 Aligned_cols=36 Identities=6% Similarity=-0.117 Sum_probs=25.8
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
|.+||+|++||++++......++..+|...+-+..|
T Consensus 155 L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L 190 (206)
T 3r0h_A 155 LQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSM 190 (206)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 889999999999999876555555555444444444
No 194
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=55.48 E-value=5.8 Score=30.67 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=33.2
Q ss_pred CCccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchHH
Q 010326 258 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (513)
Q Consensus 258 CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~I 305 (513)
-+.|..|...+........+.=+..||..|..+.+.....|--|..+|
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 366777777665555555556778888888887766666777777554
No 195
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=55.19 E-value=3.7 Score=44.85 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=30.0
Q ss_pred hhhhccchhhHhhhcC--CCCC-CCcchhhHHHHHHHHHhhc
Q 010326 405 SILAHEMMHAWLRLKG--YPNL-RPDVEEGICQVLAHMWLES 443 (513)
Q Consensus 405 silaHE~~Hawl~l~g--~~~L-~~~~eEG~cq~~a~~wl~~ 443 (513)
.+||||+.|-|.. +- ...- ...+-|||...++++|++.
T Consensus 296 ~viaHElaHqWfG-nlVT~~~W~dlWLnEGfAtY~e~~~~~~ 336 (605)
T 3cia_A 296 NLIAHELAHSWSG-NLVTNESWRDLWLNEGFTSYVENRIMEA 336 (605)
T ss_dssp HHHHHHHHHTTBT-TTEEESSTTSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-cccccCcchHhHHHHHHHHHHHHHHHHH
Confidence 5999999999976 22 2222 4588999999999999985
No 196
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=55.04 E-value=1 Score=38.86 Aligned_cols=31 Identities=10% Similarity=0.048 Sum_probs=23.0
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecC
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYG 397 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~g 397 (513)
|++||+|++|||+++......++..+|...|
T Consensus 84 L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~ 114 (128)
T 1nf3_C 84 LAVNDEVLEVNGIEVSGKSLDQVTDMMIANS 114 (128)
T ss_dssp CCTTCEEEEETTEESTTCCHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 7899999999999997666666555544333
No 197
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=54.94 E-value=0.98 Score=36.38 Aligned_cols=30 Identities=3% Similarity=0.015 Sum_probs=22.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILIL 395 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l 395 (513)
-|.+||+|+.|||+++....+.++..+|..
T Consensus 46 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~ 75 (95)
T 3r68_A 46 GLKNNDLVVAVNGKSVEALDHDGVVEMIRK 75 (95)
T ss_dssp TCCTTEEEEEETTEECTTCCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 378999999999999987655555544433
No 198
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.85 E-value=6.9 Score=29.68 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=27.4
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc-----CcccccCCCCcCCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH-----HPKCDVCQNFIPTN 232 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f-----~pkC~~C~~~I~~~ 232 (513)
+.|..|...+..... ..=|..||..|....+ ..+|..|+..|...
T Consensus 21 ~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 21 VICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 455555555543222 2346678888876544 23788888887654
No 199
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=54.85 E-value=1.2 Score=38.22 Aligned_cols=27 Identities=7% Similarity=0.254 Sum_probs=20.4
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
.|.+||+|++|||.++......++..+
T Consensus 71 gL~~GD~Il~VnG~~v~~~~~~~~~~~ 97 (120)
T 2iwo_A 71 KLRVGDRIVTICGTSTEGMTHTQAVNL 97 (120)
T ss_dssp CCCTTCEEEEETTEECTTCBHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 578999999999999986554444333
No 200
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=54.68 E-value=1 Score=36.27 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=17.6
Q ss_pred cCCCCeeeeeccccccccccce
Q 010326 367 IGAGYRLIDMITEPYRLIRRCE 388 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~e 388 (513)
|.+||+|+.|||.++......+
T Consensus 52 l~~GD~I~~vng~~v~~~~~~~ 73 (97)
T 2iwn_A 52 IQIGDQIIAVDGTNLQGFTNQQ 73 (97)
T ss_dssp CCTTCEEEEETTEECTTSCHHH
T ss_pred CCCCCEEEEECCEECCCCCHHH
Confidence 8899999999999987544333
No 201
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.53 E-value=1.3 Score=35.94 Aligned_cols=34 Identities=9% Similarity=-0.039 Sum_probs=23.5
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 400 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 400 (513)
.|++||+|+.||++++ .....++..+|...|-+.
T Consensus 47 ~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v 80 (91)
T 2e7k_A 47 LLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSV 80 (91)
T ss_dssp CCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSB
T ss_pred CCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeE
Confidence 3789999999999999 555556555554344333
No 202
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=54.25 E-value=1.1 Score=36.93 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=25.9
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
-|.+||+|+.|||+++......++..+|...|-+..|
T Consensus 43 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 79 (106)
T 3ngh_A 43 GLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL 79 (106)
T ss_dssp TCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEE
Confidence 4789999999999999876655555554444444444
No 203
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.11 E-value=0.89 Score=37.58 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=19.6
Q ss_pred ccCCCCeeeeeccccccccccceeee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTA 391 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~ 391 (513)
-|.+||+|++|||+++......++..
T Consensus 49 Gl~~GD~I~~vng~~v~~~~~~~~~~ 74 (106)
T 2eei_A 49 GVLADDHLIEVNGENVEDASHEEVVE 74 (106)
T ss_dssp TCCSSEEEEEETTEECTTCCHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHH
Confidence 37899999999999997654444433
No 204
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.66 E-value=1.2 Score=36.67 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=16.8
Q ss_pred ccCCCCeeeeecccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLI 384 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~ 384 (513)
.|.+||+|++||++++...
T Consensus 53 GL~~GD~I~~ing~~v~~~ 71 (100)
T 2edp_A 53 KMRTGDELVNINGTPLYGS 71 (100)
T ss_dssp SCCTTCEEEEETTEECCSC
T ss_pred CCCCCCEEEEECCEEccch
Confidence 5789999999999998764
No 205
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=53.35 E-value=1.2 Score=35.82 Aligned_cols=24 Identities=8% Similarity=0.115 Sum_probs=18.4
Q ss_pred ccCCCCeeeeecccccccccccee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEV 389 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV 389 (513)
-|++||+|++|||.++......++
T Consensus 41 Gl~~GD~I~~vng~~v~~~~~~~~ 64 (91)
T 2f5y_A 41 GLQQLDTVLQLNERPVEHWKCVEL 64 (91)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 378999999999999876443333
No 206
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=53.26 E-value=7.9 Score=29.86 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=32.2
Q ss_pred CCCcccCCCCCCCCCcceeecCCcccccccccccc---CcccccCCCCcCC
Q 010326 184 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPT 231 (513)
Q Consensus 184 p~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f---~pkC~~C~~~I~~ 231 (513)
+.-|.|..|...+.+ .....-|..||..|..+.+ ...|..|+..+..
T Consensus 6 ~~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 345788888887765 3444678899998876543 3467777777654
No 207
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=53.21 E-value=1.3 Score=38.02 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=23.7
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 400 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 400 (513)
-|++||+|+.||+.+++...+.++..+|...|-+.
T Consensus 63 GL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v 97 (118)
T 2yub_A 63 AIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTL 97 (118)
T ss_dssp HCCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCE
T ss_pred CCCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEE
Confidence 47899999999999998764445444443334333
No 208
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=52.93 E-value=1.4 Score=36.16 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=20.8
Q ss_pred cCCCCeeeeeccccccccccceeeeEe
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAIL 393 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il 393 (513)
|.+||+|++|||.++......++..+|
T Consensus 58 l~~GD~I~~ing~~v~~~~~~~~~~~l 84 (103)
T 2fcf_A 58 LKPGDRIVEVDGMDLRDASHEQAVEAI 84 (103)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 789999999999999875555554444
No 209
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=52.90 E-value=1.7 Score=37.92 Aligned_cols=37 Identities=16% Similarity=-0.010 Sum_probs=25.7
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeee--cCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILIL--YGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l--~glP~~L 402 (513)
.|.+||+|+.|||+++......++..+|.. .|-+..|
T Consensus 67 ~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l 105 (126)
T 1wif_A 67 ILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQI 105 (126)
T ss_dssp SSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEE
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEE
Confidence 378999999999999975445555555443 2555555
No 210
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=52.88 E-value=1.1 Score=36.02 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=17.6
Q ss_pred ccCCCCeeeeecccccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLIRR 386 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~ 386 (513)
-|.+||+|++|||+++.....
T Consensus 44 Gl~~GD~I~~ing~~v~~~~~ 64 (91)
T 2pkt_A 44 NLCIGDVITAIDGENTSNMTH 64 (91)
T ss_dssp TCCTTCEEEEETTEECTTCCH
T ss_pred CCCCCCEEEEECCEECCCCCH
Confidence 478999999999999876553
No 211
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=52.70 E-value=6.7 Score=31.93 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=17.2
Q ss_pred CCCChhHHHHHHHhhhhhhhh
Q 010326 38 SGFDNEEIDRAIALSLVEVDQ 58 (513)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~ 58 (513)
.+.|.+||..|||.||.|-..
T Consensus 51 ~edeD~DLKAAIaASLrd~E~ 71 (81)
T 1q0v_A 51 EEEEDPDLKAAIQESLREAEE 71 (81)
T ss_dssp CCCSCHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHH
Confidence 467789999999999976543
No 212
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=52.64 E-value=3.2 Score=35.93 Aligned_cols=20 Identities=20% Similarity=0.679 Sum_probs=15.6
Q ss_pred cccccCcccccCCCCcCCCC
Q 010326 214 YKEQHHPKCDVCQNFIPTNS 233 (513)
Q Consensus 214 Y~~~f~pkC~~C~~~I~~~~ 233 (513)
|.+....+|..|++.|.-..
T Consensus 15 YAKS~RA~Ck~Ck~kI~Kge 34 (114)
T 1v9x_A 15 YAKSSRSSCKTCKSVINKEN 34 (114)
T ss_dssp ECSCSCCBCSSSCCBCCSSS
T ss_pred EeCCCCCCchhhCCccCCCC
Confidence 55556678999999998865
No 213
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=52.60 E-value=1.2 Score=38.21 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=20.2
Q ss_pred cCCCCeeeeeccccccccccceeeeEe
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAIL 393 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il 393 (513)
|.+||+|++|||+++......++..+|
T Consensus 77 L~~GD~Il~Ing~~v~~~~~~~~~~~l 103 (121)
T 2kom_A 77 LKAGDRLIEVNGVDLVGKSQEEVVSLL 103 (121)
T ss_dssp CCSSSEEEEETTEECTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCEEcCCCCHHHHHHHH
Confidence 789999999999999765444444443
No 214
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.34 E-value=15 Score=26.71 Aligned_cols=44 Identities=18% Similarity=0.413 Sum_probs=25.8
Q ss_pred cccCCCCCCCCCcceeecCCccccccccccccCcccccCCCCcCCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTN 232 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~C~~~I~~~ 232 (513)
+.|..|...+..- ....=|..||..|... ...+|..|...+...
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCLEA-SGMQCPICQAPWPLG 50 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTCSS-SSSSCSSCCSSSSCC
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHHcc-CCCCCCcCCcEeecC
Confidence 4556665554432 2223456677777654 456788888877654
No 215
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=52.19 E-value=1.3 Score=36.09 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=23.6
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 400 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 400 (513)
-|.+||+|+.|||.++......++..+|...|-+.
T Consensus 51 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v 85 (99)
T 3khf_A 51 GLRAGDLITHINGESVLGLVHMDVVELLLKSGNKI 85 (99)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEE
Confidence 37899999999999998655545444443334333
No 216
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=52.08 E-value=1.1 Score=38.57 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=26.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeEee--ecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILI--LYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~--l~glP~~L 402 (513)
-|.+||+|+.|||+++......++..+|. ..|.+..|
T Consensus 68 GL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l 106 (124)
T 3tsv_A 68 GLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTI 106 (124)
T ss_dssp TCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEE
Confidence 47899999999999998775555555444 24555555
No 217
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=51.74 E-value=2.2 Score=34.02 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=18.7
Q ss_pred ccCCCCeeeeecccccccccccee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEV 389 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV 389 (513)
-|.+||+|++|||+++......++
T Consensus 44 GL~~GD~I~~ing~~v~~~~~~~~ 67 (91)
T 1g9o_A 44 GLLAGDRLVEVNGENVEKETHQQV 67 (91)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 378999999999999976544443
No 218
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.61 E-value=7.5 Score=29.66 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=28.8
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--CcccccCCCCcCCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPTN 232 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f--~pkC~~C~~~I~~~ 232 (513)
+.|..|...+.+......=|..||..|....+ ...|..|+..|...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 55666665555422222346678888875533 56899999888764
No 219
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=51.50 E-value=1.5 Score=37.42 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=20.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
.|.+||+|++|||+++......++..+
T Consensus 71 ~L~~GD~Il~Vng~~v~~~~~~~~~~~ 97 (117)
T 2fne_A 71 RLKRGDQIIAVNGQSLEGVTHEEAVAI 97 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 388999999999999885444444333
No 220
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=51.10 E-value=1.2 Score=36.67 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=18.2
Q ss_pred ccCCCCeeeeeccccccccccce
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCE 388 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~e 388 (513)
-|++||+|+.||+.++......+
T Consensus 46 GL~~GD~I~~ing~~v~~~~~~~ 68 (103)
T 1wf7_A 46 HVRIGDVVLSIDGISAQGMTHLE 68 (103)
T ss_dssp TCCTTCBEEEETTEECSSCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 47899999999999987654333
No 221
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=50.93 E-value=1.4 Score=37.89 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=20.6
Q ss_pred cCCCCeeeeeccccccccccceeeeEe
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAIL 393 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il 393 (513)
|.+||+|+.|||.++......++..+|
T Consensus 65 L~~GD~I~~vng~~v~~~~~~~~~~~l 91 (129)
T 2dmz_A 65 IQVNDKIVAVDGVNIQGFANHDVVEVL 91 (129)
T ss_dssp CCSSCBEEEETTBCCTTCCHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 889999999999999875554544443
No 222
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.55 E-value=2.7 Score=35.80 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=19.9
Q ss_pred ccCCCCeeeeeccccccccccceeee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTA 391 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~ 391 (513)
-|.+||+|++||+.+++.....++..
T Consensus 61 GL~~GD~Il~Ing~~v~~~~~~~~~~ 86 (114)
T 2d8i_A 61 GLKAGDEILEINNRAADALNSSMLKD 86 (114)
T ss_dssp TCCTTCCEEEESSCBGGGCCHHHHHH
T ss_pred CCCCCCEEEEECCEECCCcCHHHHHH
Confidence 47899999999999998754444433
No 223
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.99 E-value=1.6 Score=35.79 Aligned_cols=25 Identities=4% Similarity=0.007 Sum_probs=19.2
Q ss_pred ccCCCCeeeeeccccccccccceee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVT 390 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~ 390 (513)
-|.+||.|+.||++++......++.
T Consensus 47 Gl~~GD~I~~ing~~v~~~~~~~~~ 71 (102)
T 2d90_A 47 GLKNNDLVVAVNGKSVEALDHDGVV 71 (102)
T ss_dssp TCCTTCEEEEESSCBCTTSCHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHH
Confidence 3789999999999999875444433
No 224
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=49.78 E-value=1.1 Score=38.22 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=19.7
Q ss_pred cCCCCeeeeeccccccccccceeeeE
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
|.+||+|+.||++++......++..+
T Consensus 64 L~~GD~I~~ing~~v~~~~~~~~~~~ 89 (122)
T 1v5q_A 64 LQIGDRVMAINGIPTEDSTFEEANQL 89 (122)
T ss_dssp CCTTCCEEEETTEESSSSCHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHH
Confidence 78999999999999876544454443
No 225
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=49.76 E-value=2.7 Score=35.44 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=21.6
Q ss_pred ccCCCCeeeeeccccccccccceeeeEe
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAIL 393 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il 393 (513)
.|.+||+|++|||.++......++..+|
T Consensus 60 GL~~GD~Il~ing~~v~~~~~~~~~~~~ 87 (119)
T 2cs5_A 60 RLNEGDQVVLINGRDIAEHTHDQVVLFI 87 (119)
T ss_dssp CCCTTCEEEEETTBCTTSSCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 6889999999999999876555544443
No 226
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=49.09 E-value=1.4 Score=34.12 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=17.7
Q ss_pred cCCCCeeeeecccccccccccee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEV 389 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV 389 (513)
|.+||+|+.||+.++......++
T Consensus 40 l~~GD~I~~ing~~v~~~~~~~~ 62 (81)
T 2rcz_A 40 IQEGDVVLKINGTVTENMSLTDA 62 (81)
T ss_dssp CCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 78999999999999874433333
No 227
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=49.00 E-value=2.6 Score=34.14 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=20.2
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
-|.+||+|++|||+++......++..+
T Consensus 50 Gl~~GD~I~~ing~~v~~~~~~~~~~~ 76 (98)
T 2jxo_A 50 GLRAQDRIVEVNGVCMEGKQHGDVVSA 76 (98)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 378999999999999987544444443
No 228
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=48.92 E-value=3.6 Score=32.27 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=30.2
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchHHHHHHhhcCCccccccceEEeehhhHHHhhcCC
Q 010326 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGE 337 (513)
Q Consensus 259 F~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~I~~f~e~l~~~i~~~iPv~LVe~~aLn~a~e~e 337 (513)
..|-.|+..|. +....|.++|..|- +-.+|...||++|++-...-..|+-+
T Consensus 11 L~CP~ck~~L~-----~~~~~g~LvC~~c~-----------------------~~YPI~dGIPvmL~~Ear~~~~~~~~ 61 (67)
T 2jny_A 11 LACPKDKGPLR-----YLESEQLLVNERLN-----------------------LAYRIDDGIPVLLIDEATEWTPNNLE 61 (67)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTTT-----------------------EEEEEETTEECCCSSCCEECCCCCCC
T ss_pred hCCCCCCCcCe-----EeCCCCEEEcCCCC-----------------------ccccCCCCEeeeChhHhcCCchhhhh
Confidence 56667776552 23346778888772 22567788998888633322334433
No 229
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=48.84 E-value=3.6 Score=42.41 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=0.0
Q ss_pred ccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
.|.+||+|++|||+++......++..+|...+-...|
T Consensus 332 GL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L 368 (388)
T 3suz_A 332 GVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHM 368 (388)
T ss_dssp -------------------------------------
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 4889999999999999887778888877776655555
No 230
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=48.68 E-value=1.5 Score=40.56 Aligned_cols=35 Identities=9% Similarity=0.052 Sum_probs=25.6
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
|++||+|++|||.++......++..+|.- |-+..|
T Consensus 128 L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v~l 162 (192)
T 3k1r_A 128 LQVGDEIVRINGYSISSCTHEEVINLIRT-EKTVSI 162 (192)
T ss_dssp CCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeEEE
Confidence 78999999999999987666665555444 555444
No 231
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=48.56 E-value=1.5 Score=36.82 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=18.7
Q ss_pred CCCCeeeeeccccccccccceeeeE
Q 010326 368 GAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 368 ~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
.+||+|++|||+++......++..+
T Consensus 68 ~~GD~I~~vng~~v~~~~~~~~~~~ 92 (113)
T 1va8_A 68 HEGDEVLEINGIEIRGKDVNEVFDL 92 (113)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCEEEEECCEECCCCCHHHHHHH
Confidence 8999999999999985444444333
No 232
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=48.44 E-value=1.9 Score=42.57 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=30.4
Q ss_pred cccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 365 PRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 365 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
..|.+||+|++|||+++......++..+|...|-+..|
T Consensus 120 aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L 157 (263)
T 1z87_A 120 EALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL 157 (263)
T ss_dssp TTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCE
T ss_pred CCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEE
Confidence 35789999999999999988777777776666666655
No 233
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=47.76 E-value=5.3 Score=43.57 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=28.2
Q ss_pred hhhhccchhhHhhhcC--CCCC-CCcchhhHHHHHHHHHhhc
Q 010326 405 SILAHEMMHAWLRLKG--YPNL-RPDVEEGICQVLAHMWLES 443 (513)
Q Consensus 405 silaHE~~Hawl~l~g--~~~L-~~~~eEG~cq~~a~~wl~~ 443 (513)
.+||||++|-|.. +- ...- ...+-|||...++++|++.
T Consensus 289 ~viaHElAHqWfG-nlVT~~~W~d~WLnEGfAty~e~~~~~~ 329 (608)
T 3u9w_A 289 NVIAHEISHSWTG-NLVTNKTWDHFWLNEGHTVYLERHICGR 329 (608)
T ss_dssp HHHHHHHHTTTBT-TTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhc-CcCccccccchhHHHhHHHHHHHHHHHH
Confidence 4899999999976 21 1111 3467899999999998763
No 234
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=47.75 E-value=1.5 Score=34.98 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=17.2
Q ss_pred cCCCCeeeeeccccccccccce
Q 010326 367 IGAGYRLIDMITEPYRLIRRCE 388 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~e 388 (513)
|.+||+|+.|||.++......+
T Consensus 42 l~~GD~I~~ing~~v~~~~~~~ 63 (92)
T 3cyy_A 42 IQEGDVVLKINGTVTENMSLTD 63 (92)
T ss_dssp CCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCCEEEEECCEECCCCCHHH
Confidence 7899999999999987433333
No 235
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=47.40 E-value=1.7 Score=36.64 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=16.5
Q ss_pred cCCCCeeeeeccccccccc
Q 010326 367 IGAGYRLIDMITEPYRLIR 385 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~ 385 (513)
|.+||+|++||+.++....
T Consensus 60 L~~GD~Il~vng~~v~~~~ 78 (117)
T 1uit_A 60 LEYGDQLLEFNGINLRSAT 78 (117)
T ss_dssp CCTTCEECEETTEETTTCC
T ss_pred CCCCCEEEEECCEECCCCC
Confidence 7899999999999987654
No 236
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=47.20 E-value=2.5 Score=35.71 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=18.2
Q ss_pred cCCCCeeeeecccccccccccee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEV 389 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV 389 (513)
|.+||+|++|||.++......++
T Consensus 61 L~~GD~Il~ing~~v~~~~~~~~ 83 (119)
T 1x6d_A 61 IQKGNEVLSINGKSLKGTTHHDA 83 (119)
T ss_dssp SCTTCBCCEETTEECSSCCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 88999999999999875444443
No 237
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=47.08 E-value=1.5 Score=36.03 Aligned_cols=24 Identities=8% Similarity=0.115 Sum_probs=18.3
Q ss_pred ccCCCCeeeeecccccccccccee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEV 389 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV 389 (513)
-|.+||+|+.||+.++......++
T Consensus 53 GL~~GD~I~~vng~~v~~~~~~~~ 76 (100)
T 1whd_A 53 GLQQLDTVLQLNERPVEHWKCVEL 76 (100)
T ss_dssp TCCSSCEEEEETTEECTTCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 478999999999999875433333
No 238
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=46.96 E-value=1.7 Score=36.15 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=17.3
Q ss_pred ccCCCCeeeeecccccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLIRR 386 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~ 386 (513)
-|.+||+|+.||+.++.....
T Consensus 63 GL~~GD~I~~ing~~v~~~~~ 83 (110)
T 1x5q_A 63 GVRVGDKLLEVNGVALQGAEH 83 (110)
T ss_dssp TCCTTCEEEEETTEECTTCCH
T ss_pred CCCCCCEEEEECCEECCCcCH
Confidence 378999999999999876443
No 239
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=46.78 E-value=4.8 Score=34.22 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=16.4
Q ss_pred cccccCcccccCCCCcCCCCc
Q 010326 214 YKEQHHPKCDVCQNFIPTNSA 234 (513)
Q Consensus 214 Y~~~f~pkC~~C~~~I~~~~~ 234 (513)
|.+....+|..|+..|.-+..
T Consensus 20 yAkS~Ra~Ck~C~~kI~Kgel 40 (106)
T 2dmj_A 20 YAKSGRASCKKCSESIPKDSL 40 (106)
T ss_dssp ECCSSCCBCSSSCCBCCTTCE
T ss_pred EeCCCCCcchhhCCccCCCCE
Confidence 555566789999999998753
No 240
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=46.39 E-value=6.6 Score=45.01 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=30.0
Q ss_pred hhhhhhccchhhHhhhcC--CCCC-CCcchhhHHHHHHHHHhhc
Q 010326 403 TGSILAHEMMHAWLRLKG--YPNL-RPDVEEGICQVLAHMWLES 443 (513)
Q Consensus 403 ~gsilaHE~~Hawl~l~g--~~~L-~~~~eEG~cq~~a~~wl~~ 443 (513)
...+||||++|-|.. +- ...- ...+-|||+.+|+++|++.
T Consensus 316 ~~~viaHElAHqWFG-nlVT~~~W~dlWLnEGFAty~e~~~~~~ 358 (909)
T 4fke_A 316 VVTVIAHELAHQWFG-NLVTLAWWNDLWLNEGFASYVEYLGADH 358 (909)
T ss_dssp HHHHHHHHHHTTTBT-TTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhc-CeecccccCcceeehHHHHHHHHHHHHh
Confidence 346899999999986 21 1111 2468999999999999874
No 241
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=46.28 E-value=7.5 Score=44.48 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=31.2
Q ss_pred hhhhhhhccchhhHhhhcC--CCC-CCCcchhhHHHHHHHHHhhcc
Q 010326 402 LTGSILAHEMMHAWLRLKG--YPN-LRPDVEEGICQVLAHMWLESE 444 (513)
Q Consensus 402 L~gsilaHE~~Hawl~l~g--~~~-L~~~~eEG~cq~~a~~wl~~~ 444 (513)
-...+||||++|-|.. +- ... -...+-|||..+|+++|++..
T Consensus 301 ~~~~viaHElAHqWFG-nlVT~~~W~dlWLnEGfAty~e~~~~~~~ 345 (897)
T 2xdt_A 301 GITMTVAHELAHQWFG-NLVTMEWWNDLWLNEGFAKFMEFVSVSVT 345 (897)
T ss_dssp HHHHHHHHHHHTTTBT-TTEEESSGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CEeccCCcchhhhhHHHHHHHHHHHHHHh
Confidence 3456999999999976 21 111 135789999999999998853
No 242
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.83 E-value=7.5 Score=29.09 Aligned_cols=45 Identities=22% Similarity=0.617 Sum_probs=27.8
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CcccccCCCCcCCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f---~pkC~~C~~~I~~~ 232 (513)
+.|..|...+..... ..=|..||..|..+.+ ...|..|+..|...
T Consensus 16 ~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 455555554433211 2346778888877654 35799998888754
No 243
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.78 E-value=1.7 Score=35.50 Aligned_cols=21 Identities=5% Similarity=0.041 Sum_probs=17.4
Q ss_pred ccCCCCeeeeecccccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLIRR 386 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~ 386 (513)
-|.+||+|++||++++.....
T Consensus 53 GL~~GD~I~~ing~~v~~~~~ 73 (100)
T 2eeh_A 53 GLCVGDKITEVNGLSLESTTM 73 (100)
T ss_dssp TCCSSCEEEEETTEECSSCCH
T ss_pred CCCCCCEEEEECCEECCCCCH
Confidence 378999999999999877543
No 244
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=45.78 E-value=3.1 Score=32.96 Aligned_cols=27 Identities=7% Similarity=0.224 Sum_probs=20.2
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
.|.+||+|+.|||.++......++..+
T Consensus 42 Gl~~GD~I~~vng~~v~~~~~~~~~~~ 68 (88)
T 3bpu_A 42 GLKEGDLIVEVNKKNVQALTHNQVVDM 68 (88)
T ss_dssp TCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHH
Confidence 478999999999999976544444433
No 245
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=45.64 E-value=13 Score=26.46 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=27.3
Q ss_pred CccCCCCCcCCCCCceEEcc-CCcccccccccccccCCCCCcccch
Q 010326 259 PRCCSCERMEPRDTKYLSLD-DGRKLCLECLDSAIMDTHECQPLYL 303 (513)
Q Consensus 259 F~C~~C~r~l~~g~~y~~l~-dgr~yC~~Cy~~~v~~t~~C~~c~~ 303 (513)
..|..|...+..+.....+. =|..||..|..+.+.....|.-|..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~ 51 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRL 51 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCC
Confidence 45666666655444444443 5677788887766555556666654
No 246
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=44.94 E-value=1.6 Score=35.98 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=20.8
Q ss_pred cCCCCeeeeeccccccccccceeeeEee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILI 394 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~ 394 (513)
|.+||+|+.|||+++......++..+|.
T Consensus 66 l~~GD~I~~vng~~v~~~~~~~~~~~l~ 93 (104)
T 2z17_A 66 LQAGDVLANINGVSTEGFTYKQVVDLIR 93 (104)
T ss_dssp CCTTCBCCEETTEECTTCCHHHHHHHHH
T ss_pred CCCCCEEEEECCEEcCCCCHHHHHHHHH
Confidence 7899999999999987555555544443
No 247
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=44.64 E-value=1.9 Score=34.75 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=17.4
Q ss_pred ccCCCCeeeeecccccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLIRR 386 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~ 386 (513)
-|.+||+|+.||++++.....
T Consensus 46 GL~~GD~I~~ing~~v~~~~~ 66 (93)
T 2dls_A 46 GVKEGDRIIKVNGTMVTNSSH 66 (93)
T ss_dssp TCCSSCEEEEETTEECSSSCH
T ss_pred CCCCCCEEEEECCEECCCCCH
Confidence 378999999999999876543
No 248
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=44.37 E-value=7.4 Score=43.84 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=30.0
Q ss_pred hhhhhhccchhhHhhhcC--CCC-CCCcchhhHHHHHHHHHhhc
Q 010326 403 TGSILAHEMMHAWLRLKG--YPN-LRPDVEEGICQVLAHMWLES 443 (513)
Q Consensus 403 ~gsilaHE~~Hawl~l~g--~~~-L~~~~eEG~cq~~a~~wl~~ 443 (513)
...+||||+.|-|.. +- ... -...+-|||..+|++++++.
T Consensus 259 ~~~viaHElaHqWfG-nlVT~~~W~dlWLnEGfA~y~~~~~~~~ 301 (780)
T 1z5h_A 259 SANVIAHEIAHQWFG-DLVTMKWWNDLWLNESFATFMSYKTMDT 301 (780)
T ss_dssp HHHHHHHHHHHTTBT-TTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccccCCcccccccHHHHHHHHHHHHHH
Confidence 457999999999976 21 111 13478999999999998874
No 249
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=43.67 E-value=14 Score=30.70 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=33.7
Q ss_pred CCCcccCCCCCCCCCcceeecCCcccccccccccc--CcccccCCCCcCCC
Q 010326 184 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPTN 232 (513)
Q Consensus 184 p~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f--~pkC~~C~~~I~~~ 232 (513)
|.-|.|..|...+.+ ......|..||+.|-...+ ...|..|+.++...
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 667899999887766 4444578999988854322 45778887777653
No 250
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=43.41 E-value=9.7 Score=44.06 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=30.6
Q ss_pred hhhhhhhccchhhHhhhcC--CCCC-CCcchhhHHHHHHHHHhhc
Q 010326 402 LTGSILAHEMMHAWLRLKG--YPNL-RPDVEEGICQVLAHMWLES 443 (513)
Q Consensus 402 L~gsilaHE~~Hawl~l~g--~~~L-~~~~eEG~cq~~a~~wl~~ 443 (513)
....+||||++|-|.. +- ...- ...+-|||..+|+++|++.
T Consensus 363 ~~~~vIaHElAHqWFG-nlVT~~wW~dlWLnEGFAty~e~~~~~~ 406 (967)
T 3se6_A 363 WVTRVIAHELAHQWFG-NLVTMEWWNDIWLNEGFAKYMELIAVNA 406 (967)
T ss_dssp HHHHHHHHHHGGGTBT-TTEEESSGGGTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc-CccccCCCccccHHHHHHHHHHHHHHHH
Confidence 3457999999999976 21 1111 3478999999999999874
No 251
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=43.27 E-value=3.3 Score=35.26 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=17.1
Q ss_pred ccCCCCeeeeecccccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLIRR 386 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~ 386 (513)
+|.+||+|+.|||.++.....
T Consensus 63 ~L~~GD~Il~ing~~v~~~~~ 83 (125)
T 3hpk_A 63 TVAAGDEITGVNGRSIKGKTK 83 (125)
T ss_dssp CCCTTCEEEEETTEECTTCCH
T ss_pred CCCCCCEEEEECCEECCCCCH
Confidence 388999999999999874433
No 252
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=42.67 E-value=2.2 Score=39.17 Aligned_cols=36 Identities=25% Similarity=0.191 Sum_probs=24.7
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
|.+||+|++||+.++......++..+|...|-+..|
T Consensus 154 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l 189 (200)
T 2qt5_A 154 IKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATL 189 (200)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 889999999999999855555555444434444433
No 253
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=42.55 E-value=2.5 Score=38.81 Aligned_cols=34 Identities=12% Similarity=-0.012 Sum_probs=24.1
Q ss_pred cCCCCeeeeeccccccccccceeeeEeeecCchh
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAILILYGLPR 400 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~ 400 (513)
|.+||+|++|||++++.....++..+|...|-+.
T Consensus 154 l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v 187 (196)
T 1p1d_A 154 LELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLV 187 (196)
T ss_dssp CCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEE
Confidence 8899999999999998755555555444334333
No 254
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.36 E-value=15 Score=28.34 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=25.5
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--------CcccccCCCCcCCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--------HPKCDVCQNFIPTN 232 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f--------~pkC~~C~~~I~~~ 232 (513)
+.|..|...+..-.. ..=|..||..|....+ ...|..|+..+...
T Consensus 20 ~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 20 VTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 455555555443221 2335677777765432 45788888777653
No 255
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=41.94 E-value=2.1 Score=34.47 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=16.8
Q ss_pred ccCCCCeeeeeccccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLIR 385 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~ 385 (513)
-|.+||+|+.|||+++....
T Consensus 51 Gl~~GD~I~~ing~~v~~~~ 70 (97)
T 2w4f_A 51 GVRVGDKLLEVNGVALQGAE 70 (97)
T ss_dssp TCCTTCEEEEETTEECTTCC
T ss_pred CCCCCCEEEEECCEECCCcC
Confidence 37899999999999987644
No 256
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=41.72 E-value=13 Score=35.50 Aligned_cols=47 Identities=6% Similarity=-0.001 Sum_probs=29.8
Q ss_pred CCcccCCCCCCCCCcceeecCCccccccccccc---cCcccccCCCCcCCC
Q 010326 185 ECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ---HHPKCDVCQNFIPTN 232 (513)
Q Consensus 185 ~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~---f~pkC~~C~~~I~~~ 232 (513)
.-|.|..|...+.+ ......|..||+.|-... .+..|..|+.++...
T Consensus 207 ~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 45667777666654 333446888888886542 233488888877643
No 257
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=41.03 E-value=4.1 Score=34.38 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=18.6
Q ss_pred ccCCCCeeeeeccccccccccceee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVT 390 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~ 390 (513)
-|.+||+|+.|||+++......++.
T Consensus 53 GL~~GD~Il~InG~~v~~~~~~d~~ 77 (111)
T 1vae_A 53 GAKEGDYIVSIQGVDCKWLTVSEVM 77 (111)
T ss_dssp HCCTTCEEEEETTEECSSCCHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHH
Confidence 4779999999999998744334443
No 258
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=40.24 E-value=15 Score=30.35 Aligned_cols=47 Identities=4% Similarity=-0.032 Sum_probs=31.6
Q ss_pred CCCcccCCCCCCCCCcceeecCC-cccccccccccc--CcccccCCCCcCC
Q 010326 184 PECFRCHSCNLPITDVEFSMSGN-RPYHKHCYKEQH--HPKCDVCQNFIPT 231 (513)
Q Consensus 184 p~CFrCs~C~~~L~~~~F~~~dG-~pYCk~CY~~~f--~pkC~~C~~~I~~ 231 (513)
|.-|.|..|...+.+ ......| ..||+.|..+.+ ...|..|++++..
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 556888888877766 3444556 899988854432 3567777776654
No 259
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=40.11 E-value=9.8 Score=30.88 Aligned_cols=45 Identities=16% Similarity=0.332 Sum_probs=25.1
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--CcccccCCCCcCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 231 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f--~pkC~~C~~~I~~ 231 (513)
+.|..|...+..-.....=|..||..|....+ ...|..|+..+..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45566655554422221346677877765432 3467777777664
No 260
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=39.29 E-value=4.5 Score=32.96 Aligned_cols=27 Identities=4% Similarity=0.088 Sum_probs=20.3
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
-|.+||+|+.|||.++......++..+
T Consensus 62 Gl~~GD~I~~ing~~v~~~~~~~~~~~ 88 (104)
T 3sfj_A 62 GLQIGDKIMQVNGWDMTMVTHDQARKR 88 (104)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 478999999999999876554444433
No 261
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=39.15 E-value=4.1 Score=34.44 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=19.7
Q ss_pred ccCCCCeeeeeccccccccccceeeeE
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEVTAI 392 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV~~I 392 (513)
-|.+||+|+.|||+++......++..+
T Consensus 61 GL~~GD~Il~VnG~~v~~~~~~dv~~~ 87 (109)
T 2vsv_A 61 GAREGDYIVSIQLVDCKWLTLSEVMKL 87 (109)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 478999999999999885433344333
No 262
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=39.11 E-value=6.2 Score=34.11 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=15.6
Q ss_pred cccccCcccccCCCCcCCCCc
Q 010326 214 YKEQHHPKCDVCQNFIPTNSA 234 (513)
Q Consensus 214 Y~~~f~pkC~~C~~~I~~~~~ 234 (513)
|.......|..|+..|.-+..
T Consensus 10 YAkSgRA~Ck~C~~kI~KgeL 30 (117)
T 1uw0_A 10 YAKRGTAGCKKCKEKIVKGVC 30 (117)
T ss_dssp ECCSSCEECTTSSCEECTTCE
T ss_pred EeCCCCccchhhCcccCCCCe
Confidence 444556689999999988763
No 263
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=38.75 E-value=8.1 Score=29.05 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=32.0
Q ss_pred CCccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchHH
Q 010326 258 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (513)
Q Consensus 258 CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~I 305 (513)
-..|..|...+..+.....+.=|..||..|..+.+.....|--|..+|
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 356777777665455555566678888888877655556677776543
No 264
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=38.29 E-value=15 Score=29.25 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCCcccCCCCCCCCCcceeecCCcccccccccccc--CcccccCCCCcCC
Q 010326 184 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 231 (513)
Q Consensus 184 p~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f--~pkC~~C~~~I~~ 231 (513)
+.-|.|..|...+.+ ......|..||+.|-.+.+ ...|..|++++..
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 556889988887766 4444578899988854322 4578888777654
No 265
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=37.97 E-value=5.6 Score=34.50 Aligned_cols=20 Identities=30% Similarity=0.743 Sum_probs=15.9
Q ss_pred cccccCcccccCCCCcCCCC
Q 010326 214 YKEQHHPKCDVCQNFIPTNS 233 (513)
Q Consensus 214 Y~~~f~pkC~~C~~~I~~~~ 233 (513)
|.+....+|..|++.|..+.
T Consensus 33 yAkS~RA~Ck~C~~kI~Kge 52 (116)
T 3od8_A 33 YAKSGRASCKKCSESIPKDS 52 (116)
T ss_dssp ECSSSCCBCTTTCCBCCTTS
T ss_pred EeccCCccCcccCCccCCCC
Confidence 55566678999999998765
No 266
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=37.59 E-value=17 Score=30.32 Aligned_cols=29 Identities=17% Similarity=0.495 Sum_probs=14.0
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccc
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKE 216 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~ 216 (513)
|.|..|...+..- ....=|..||..|...
T Consensus 16 ~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~ 44 (115)
T 3l11_A 16 CQCGICMEILVEP-VTLPCNHTLCKPCFQS 44 (115)
T ss_dssp HBCTTTCSBCSSC-EECTTSCEECHHHHCC
T ss_pred CCCccCCcccCce-eEcCCCCHHhHHHHHH
Confidence 4566665544431 2222345566666544
No 267
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=37.44 E-value=5 Score=31.77 Aligned_cols=17 Identities=6% Similarity=0.237 Sum_probs=15.1
Q ss_pred ccCCCCeeeeecccccc
Q 010326 366 RIGAGYRLIDMITEPYR 382 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~ 382 (513)
-|.+||.|+.|||.++.
T Consensus 45 Gl~~GD~I~~ing~~v~ 61 (90)
T 2eaq_A 45 QLQVDDEIIAINNTKFS 61 (90)
T ss_dssp TCCTTCEEEEETTEECC
T ss_pred CCCCCCEEEEECCEEcc
Confidence 47899999999999984
No 268
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=37.37 E-value=14 Score=34.28 Aligned_cols=48 Identities=8% Similarity=0.051 Sum_probs=31.3
Q ss_pred CCCcccCCCCCCCCCcceeecCCccccccccccc---cCcccccCCCCcCCC
Q 010326 184 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ---HHPKCDVCQNFIPTN 232 (513)
Q Consensus 184 p~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~---f~pkC~~C~~~I~~~ 232 (513)
|.-|.|..|...+.+ ......|..||+.|-... .+..|..|+.++...
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 345777777766655 444467888998875432 344688888877653
No 269
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=37.23 E-value=5.3 Score=33.69 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=19.5
Q ss_pred cCCCCeeeeeccccccccccceeeeEe
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTAIL 393 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~Il 393 (513)
|.+||+|+.|||.++......++..+|
T Consensus 69 L~~GD~I~~Ing~~v~~~~~~~~~~~l 95 (114)
T 2gzv_A 69 VAAGDEITGVNGRSIKGKTKVEVAKMI 95 (114)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 789999999999998544444444333
No 270
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=36.96 E-value=13 Score=35.93 Aligned_cols=51 Identities=22% Similarity=0.627 Sum_probs=30.0
Q ss_pred CCCcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccc-cCcccccCCCCcCCC
Q 010326 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ-HHPKCDVCQNFIPTN 232 (513)
Q Consensus 158 g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~-f~pkC~~C~~~I~~~ 232 (513)
....|..|+..|..| .+|..|+..+- .+|-.-|.+. -.++|..|+...+..
T Consensus 179 ~i~~C~iC~~iv~~g--------------~~C~~C~~~~H----------~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--------------QSCETCGIRMH----------LPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC--------------EECSSSCCEEC----------HHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC--------------cccCccChHHH----------HHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 467899999998533 45555542111 2233223222 246899999888764
No 271
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.80 E-value=8.3 Score=29.42 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=31.5
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchHH
Q 010326 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (513)
Q Consensus 259 F~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~I 305 (513)
..|..|...+........+.=+..||..|..+.+.....|--|..+|
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 56777777665555555556678888888877655556677776554
No 272
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.74 E-value=14 Score=28.43 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=25.7
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--------CcccccCCCCcCCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--------HPKCDVCQNFIPTN 232 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f--------~pkC~~C~~~I~~~ 232 (513)
|.|..|...+.... ...=|..||..|....+ ...|..|+..+...
T Consensus 20 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 20 VTCPICLELLKEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TSCTTTCSCCSSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCcCCChhhCcce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 45566655554322 22345677777765421 45688888777653
No 273
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=36.74 E-value=15 Score=30.09 Aligned_cols=26 Identities=23% Similarity=0.593 Sum_probs=13.8
Q ss_pred CccccccccccccC-----cccccCCCCcCC
Q 010326 206 NRPYHKHCYKEQHH-----PKCDVCQNFIPT 231 (513)
Q Consensus 206 G~pYCk~CY~~~f~-----pkC~~C~~~I~~ 231 (513)
|..||..|....+. ..|..|...|..
T Consensus 40 gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 40 DHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp SCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 55667777554322 246666555543
No 274
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.56 E-value=21 Score=26.96 Aligned_cols=44 Identities=20% Similarity=0.430 Sum_probs=24.6
Q ss_pred cccCCCCCCCCCcceeecCCccccccccccc--cCcccccCCCCcCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPT 231 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~--f~pkC~~C~~~I~~ 231 (513)
+.|..|...+.... ...=|..||..|.... ....|..|...|..
T Consensus 16 ~~C~IC~~~~~~~~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 16 PECAICLQTCVHPV-SLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CBCSSSSSBCSSEE-EETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCccCCcccCCCE-EccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34444444443321 1233566777776543 33679999888765
No 275
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=36.51 E-value=2.7 Score=35.37 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=16.5
Q ss_pred cCCCCeeeeeccccccccc
Q 010326 367 IGAGYRLIDMITEPYRLIR 385 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~ 385 (513)
|.+||+|+.|||.++....
T Consensus 57 L~~GD~I~~vng~~v~~~~ 75 (119)
T 1tp5_A 57 LRKGDQILSVNGVDLRNAS 75 (119)
T ss_dssp CCTTEEEEEETTEECTTCC
T ss_pred CCCCCEEEEECCEECCCCC
Confidence 7899999999999987654
No 276
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=36.14 E-value=2.9 Score=34.41 Aligned_cols=19 Identities=5% Similarity=-0.008 Sum_probs=16.6
Q ss_pred ccCCCCeeeeecccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLI 384 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~ 384 (513)
.|.+||+|+.|||.++...
T Consensus 55 gl~~GD~I~~vng~~v~~~ 73 (107)
T 2h2b_A 55 QLQENDRVAMVNGVSMDNV 73 (107)
T ss_dssp TBCTTCEEEEETTEECTTC
T ss_pred CCCCCCEEEEECCEECCCc
Confidence 5789999999999998754
No 277
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=35.60 E-value=15 Score=28.14 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=14.5
Q ss_pred Ccccccccccccc---------CcccccCCCCcCC
Q 010326 206 NRPYHKHCYKEQH---------HPKCDVCQNFIPT 231 (513)
Q Consensus 206 G~pYCk~CY~~~f---------~pkC~~C~~~I~~ 231 (513)
|..||..|..+.+ ...|..|+..+..
T Consensus 31 gH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 31 GHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4556666655422 3456666666654
No 278
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=35.54 E-value=8 Score=32.47 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=10.8
Q ss_pred hhhhhhccchhhH
Q 010326 403 TGSILAHEMMHAW 415 (513)
Q Consensus 403 ~gsilaHE~~Haw 415 (513)
..++||||+.|.-
T Consensus 83 l~aVlaHElgH~~ 95 (107)
T 3cqb_A 83 AEAVLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3789999999953
No 279
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=35.42 E-value=6.3 Score=32.77 Aligned_cols=21 Identities=5% Similarity=0.227 Sum_probs=17.5
Q ss_pred ccCCCCeeeeecccccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLIRR 386 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~ 386 (513)
-|.+||+|+.||+.++.....
T Consensus 58 GL~~GD~Il~vng~~v~~~~~ 78 (114)
T 1x5n_A 58 GLEIGDQIVEVNGVDFSNLDH 78 (114)
T ss_dssp TCCTTCEEEEETTEETTSCCT
T ss_pred CCCCCCEEEEECCEECCCCCH
Confidence 478999999999999876543
No 280
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=35.35 E-value=14 Score=29.15 Aligned_cols=18 Identities=6% Similarity=-0.082 Sum_probs=15.9
Q ss_pred ccCCCCeeeeeccccccc
Q 010326 366 RIGAGYRLIDMITEPYRL 383 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~ 383 (513)
-|.+||.|+.|||++++.
T Consensus 36 Gl~~GD~I~~ing~~v~~ 53 (87)
T 2i6v_A 36 GLQDGDMAVALNGLDLTD 53 (87)
T ss_dssp TCCTTCEEEEETTEETTC
T ss_pred CCCCCCEEEEECCEECCC
Confidence 478999999999999874
No 281
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=35.10 E-value=4.5 Score=45.12 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=27.4
Q ss_pred cccCCCCeeeeeccccccccccceeeeEeeecCchhhh
Q 010326 365 PRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 402 (513)
Q Consensus 365 ~~~~~G~rilei~~~p~~~~~~~eV~~Il~l~glP~~L 402 (513)
..|++||+|++|||.+++.....++..+|...|-+..|
T Consensus 348 G~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L 385 (721)
T 2xkx_A 348 GELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 385 (721)
T ss_pred CCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEE
Confidence 34889999999999999876666665555544544444
No 282
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=34.98 E-value=19 Score=31.12 Aligned_cols=26 Identities=19% Similarity=0.549 Sum_probs=15.3
Q ss_pred Cccccccccccc--cCcccccCCCCcCC
Q 010326 206 NRPYHKHCYKEQ--HHPKCDVCQNFIPT 231 (513)
Q Consensus 206 G~pYCk~CY~~~--f~pkC~~C~~~I~~ 231 (513)
|..||..|.... ....|..|...|..
T Consensus 72 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 72 AHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 445666665432 23467888777754
No 283
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=34.60 E-value=17 Score=27.80 Aligned_cols=44 Identities=18% Similarity=0.433 Sum_probs=25.8
Q ss_pred cccCCCCCCCCCcceeec-CCccccccccccccC----cccccCCCCcCC
Q 010326 187 FRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQHH----PKCDVCQNFIPT 231 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~-dG~pYCk~CY~~~f~----pkC~~C~~~I~~ 231 (513)
+.|..|...+..- .... =|..||..|....+. ..|..|+..+..
T Consensus 16 ~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTTC-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhCC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4566665555442 2223 267788888755432 478888876543
No 284
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=34.46 E-value=24 Score=26.21 Aligned_cols=44 Identities=16% Similarity=0.474 Sum_probs=23.9
Q ss_pred ccCCCCCCCCCcceeecCCccccccccccc--cCcccccCCCCcCC
Q 010326 188 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPT 231 (513)
Q Consensus 188 rCs~C~~~L~~~~F~~~dG~pYCk~CY~~~--f~pkC~~C~~~I~~ 231 (513)
.|..|...+........=|..||..|.... ....|..|+..|..
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 344554444432222233556777776442 24578888887764
No 285
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=33.87 E-value=24 Score=27.18 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=25.4
Q ss_pred ccCCCCCCCCCcceeecCCcc-ccccccccccCcccccCCCCcCC
Q 010326 188 RCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 231 (513)
Q Consensus 188 rCs~C~~~L~~~~F~~~dG~p-YCk~CY~~~f~pkC~~C~~~I~~ 231 (513)
.|..|...+.+..+. .=|.. ||..|.... .+|..|...|..
T Consensus 26 ~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 26 LCKICMDRNIAIVFV-PCGHLVTCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp BCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC--SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCEEEc-CCCChhHHHHhhhcC--ccCCCcCcCccC
Confidence 455555544443332 23455 888887654 789999988875
No 286
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=33.67 E-value=14 Score=32.98 Aligned_cols=45 Identities=11% Similarity=0.318 Sum_probs=26.8
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CcccccCCCCcCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPT 231 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f---~pkC~~C~~~I~~ 231 (513)
+.|..|...+..-.....=|..||..|....+ ...|..|+..|..
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 56777766665522221346788888875532 3457777766643
No 287
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=33.33 E-value=16 Score=30.17 Aligned_cols=44 Identities=16% Similarity=0.369 Sum_probs=25.1
Q ss_pred cccCCCCCCCCCcceee-cCCcccccccccccc--CcccccCCCCcCC
Q 010326 187 FRCHSCNLPITDVEFSM-SGNRPYHKHCYKEQH--HPKCDVCQNFIPT 231 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~-~dG~pYCk~CY~~~f--~pkC~~C~~~I~~ 231 (513)
+.|..|...+.. .... .=|..||..|....+ ...|..|+..|..
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 567777666654 2222 456777777764432 2456666665543
No 288
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=33.14 E-value=17 Score=33.69 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=18.1
Q ss_pred eeEeeecCchhhhhhhhhhccchhhH
Q 010326 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (513)
Q Consensus 390 ~~Il~l~glP~~L~gsilaHE~~Haw 415 (513)
.+|+..++...+.+..|+|||++|.+
T Consensus 123 ~gi~~~~~~~~~~~a~~~AHElGH~l 148 (202)
T 2w15_A 123 VGVVRDHSKNNLWVAVTMAHELGHNL 148 (202)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred ceEEecCCCchhHHHHHHHHHHhhhc
Confidence 35666665444456789999999953
No 289
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.90 E-value=16 Score=28.42 Aligned_cols=43 Identities=21% Similarity=0.568 Sum_probs=25.3
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--CcccccCCCCcC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIP 230 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f--~pkC~~C~~~I~ 230 (513)
+.|..|...+... ....=|..||..|....+ ...|..|+..+.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQNP-VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCSE-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcCe-eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4555555554432 223346677877765432 457888888775
No 290
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=32.58 E-value=20 Score=30.36 Aligned_cols=43 Identities=19% Similarity=0.435 Sum_probs=29.2
Q ss_pred cCCCCCCCCCcceeecCCcccccccccc---ccCcccccCCCCcCC
Q 010326 189 CHSCNLPITDVEFSMSGNRPYHKHCYKE---QHHPKCDVCQNFIPT 231 (513)
Q Consensus 189 Cs~C~~~L~~~~F~~~dG~pYCk~CY~~---~f~pkC~~C~~~I~~ 231 (513)
|..|+.|+....-..-=+..||-.|+.. +-...|..|..+|..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 6677777765433332345888888864 445689999998875
No 291
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=32.55 E-value=12 Score=30.10 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=32.0
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchH
Q 010326 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLE 304 (513)
Q Consensus 259 F~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~ 304 (513)
..|..|...+..+.....+.=|..||..|..+.+.....|--|..+
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 5688887666556556666677888888887766656667777644
No 292
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=32.33 E-value=17 Score=33.85 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=17.8
Q ss_pred eEeeecCchhhhhhhhhhccchhh
Q 010326 391 AILILYGLPRLLTGSILAHEMMHA 414 (513)
Q Consensus 391 ~Il~l~glP~~L~gsilaHE~~Ha 414 (513)
+|....+.....++.|+|||++|-
T Consensus 121 ~v~~d~~~~~~~~a~~~AHElGH~ 144 (208)
T 4dd8_A 121 AVNQDHSKNPVGVACTMAHEMGHN 144 (208)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHH
T ss_pred eEEecCCCChhHHHHHHHHHHHHH
Confidence 455666655566678999999995
No 293
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=32.29 E-value=7 Score=34.23 Aligned_cols=25 Identities=4% Similarity=0.139 Sum_probs=18.7
Q ss_pred cCCCCeeeeeccccccccccceeee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVTA 391 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~~ 391 (513)
|.+||+|+.|||+++......++..
T Consensus 82 L~~GD~I~~vng~~v~~~~~~~~~~ 106 (139)
T 2vz5_A 82 LQIGDKIMQVNGWDMTMVTHDQARK 106 (139)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHH
T ss_pred CCCCCEEEEECCEEcCCCCHHHHHH
Confidence 7899999999999988543333333
No 294
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.96 E-value=32 Score=27.13 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=12.3
Q ss_pred CCCCCcCcCCCccccc
Q 010326 156 FSGYRICAGCNTEIGH 171 (513)
Q Consensus 156 ~~g~~~C~~C~~~I~~ 171 (513)
......|+-|...|..
T Consensus 12 ~~~i~~C~IC~~~i~~ 27 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQ 27 (74)
T ss_dssp SSSSCBCSSSCCBCSS
T ss_pred cCCCCcCcchhhHccc
Confidence 4466789999999853
No 295
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=31.87 E-value=14 Score=29.88 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=32.7
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchHH
Q 010326 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (513)
Q Consensus 259 F~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~I 305 (513)
+.|..|...+. .......=|..||..|....+.....|--|..++
T Consensus 23 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 23 LRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp TBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 67888888763 2333336789999999988776667788887654
No 296
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.62 E-value=21 Score=28.78 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=8.8
Q ss_pred CCccCCCCCcCC
Q 010326 258 TPRCCSCERMEP 269 (513)
Q Consensus 258 CF~C~~C~r~l~ 269 (513)
-|.|..|++.+.
T Consensus 80 ~~~C~~C~k~f~ 91 (115)
T 2dmi_A 80 VLKCMYCGHSFE 91 (115)
T ss_dssp SCBCSSSCCBCS
T ss_pred ceECCCCCCccC
Confidence 478888888664
No 297
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=31.61 E-value=16 Score=30.13 Aligned_cols=46 Identities=11% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchHH
Q 010326 258 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (513)
Q Consensus 258 CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~I 305 (513)
-+.|..|...+. .......=|..||..|....+.....|--|..++
T Consensus 15 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 15 HLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp GTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred cCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 377888888773 3444337899999999988776667788887654
No 298
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=31.35 E-value=20 Score=33.23 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=17.1
Q ss_pred eeEeeecCchhhhhhhhhhccchhhH
Q 010326 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (513)
Q Consensus 390 ~~Il~l~glP~~L~gsilaHE~~Haw 415 (513)
.+|...++..-+.+..|+|||++|-+
T Consensus 123 ~gi~~~~~~~~~~~a~~~AHElGHnl 148 (202)
T 1atl_A 123 IGIVQDHSPINLLMGVTMAHELGHNL 148 (202)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred CceEeccCCcceeeEEEehhhhcccc
Confidence 34555554433446789999999953
No 299
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=31.07 E-value=18 Score=29.63 Aligned_cols=19 Identities=5% Similarity=-0.123 Sum_probs=16.3
Q ss_pred ccCCCCeeeeecccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLI 384 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~ 384 (513)
-|.+||.|+.|||+|++..
T Consensus 54 Gl~~GDvI~~ing~~v~~~ 72 (105)
T 2i4s_A 54 GLQDGDMAVALNGLDLTDP 72 (105)
T ss_dssp TCCTTCEEEEETTEETTST
T ss_pred CCCCCCEEEEECCEECCCH
Confidence 4789999999999998743
No 300
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=30.95 E-value=16 Score=41.93 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=30.0
Q ss_pred hhhhhhccchhhHhhhcC--CCCC-CCcchhhHHHHHHHHHhhcc
Q 010326 403 TGSILAHEMMHAWLRLKG--YPNL-RPDVEEGICQVLAHMWLESE 444 (513)
Q Consensus 403 ~gsilaHE~~Hawl~l~g--~~~L-~~~~eEG~cq~~a~~wl~~~ 444 (513)
...+||||+.|-|.. +- ...- ...+-|||..++.++|++..
T Consensus 295 i~~vIAHElAHQWFG-NlVT~~~W~dlWLnEGFAtY~e~~~~~~~ 338 (889)
T 3ebh_A 295 ILTVVGHEYFHQYTG-NRVTLRDWFQLTLKEGLTVHRENLFSEEM 338 (889)
T ss_dssp HHHHHHHHHHTTTBT-TTBEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CeeeecccccceeeHHHHHHHHHHHHHHh
Confidence 456999999999976 32 1112 24789999999998887643
No 301
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.74 E-value=13 Score=27.92 Aligned_cols=44 Identities=16% Similarity=0.437 Sum_probs=26.0
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--CcccccCCCCcCCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPTN 232 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f--~pkC~~C~~~I~~~ 232 (513)
+.|..|...+.. ....=|..||..|....+ ...|..|...|...
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 455556555544 223345667777765432 35788888777653
No 302
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=30.50 E-value=12 Score=42.67 Aligned_cols=41 Identities=17% Similarity=0.382 Sum_probs=29.9
Q ss_pred hhhhhhccchhhHhhhcC--CCCC-CCcchhhHHHHHHHHHhhcc
Q 010326 403 TGSILAHEMMHAWLRLKG--YPNL-RPDVEEGICQVLAHMWLESE 444 (513)
Q Consensus 403 ~gsilaHE~~Hawl~l~g--~~~L-~~~~eEG~cq~~a~~wl~~~ 444 (513)
...+||||+.|-|.. +- ...- ...+-|||..++.++|++..
T Consensus 287 i~~vIaHElAHqWfG-nlVT~~~W~dlWLnEGfAty~e~~~~~~~ 330 (867)
T 2gtq_A 287 IESVVGHEYFHNWTG-NRVTCRDWFQLSLKEGLTVFRDQEFSGDR 330 (867)
T ss_dssp HHHHHHHHHHTTTBT-TTBEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cEEEecccccccchHHHHHHHHHHHHHHH
Confidence 346999999999965 21 2222 24789999999998887653
No 303
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=30.49 E-value=20 Score=30.23 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=15.4
Q ss_pred cCCCCeeeeeccccccc
Q 010326 367 IGAGYRLIDMITEPYRL 383 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~ 383 (513)
|.+||.|+.|||+++..
T Consensus 67 l~~GD~I~~ing~~v~~ 83 (124)
T 1wh1_A 67 IREGDRIIQINGIEVQN 83 (124)
T ss_dssp CCTTCEEEEESSCBCCS
T ss_pred CCCCCEEEEECCEECCC
Confidence 78999999999999874
No 304
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=30.47 E-value=7.8 Score=32.84 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=18.5
Q ss_pred cCCCCeeeeeccccccccccceee
Q 010326 367 IGAGYRLIDMITEPYRLIRRCEVT 390 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~~~~eV~ 390 (513)
|.+||+|+.|||.++......++.
T Consensus 51 l~~GD~I~~ing~~v~~~~~~~~~ 74 (128)
T 2kjd_A 51 LRAQDRIVEVNGVCMEGKQHGDVV 74 (128)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHH
Confidence 789999999999998764444433
No 305
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=30.46 E-value=5 Score=36.48 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=18.2
Q ss_pred ccCCCCeeeeeccccccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLIRRC 387 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~ 387 (513)
.|.+||+|++|||.++......
T Consensus 40 gl~~GD~I~~vng~~v~~~~~~ 61 (195)
T 2qbw_A 40 LLQPGDKIIQANGYSFINIEHG 61 (195)
T ss_dssp TCCTTCEEEEETTEECTTCCHH
T ss_pred CCCCCCEEEEECCEECCCCCHH
Confidence 5889999999999998865433
No 306
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=30.22 E-value=14 Score=42.36 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=29.7
Q ss_pred hhhhhhccchhhHhhhcC--CCCC-CCcchhhHHHHHHHHHhhcc
Q 010326 403 TGSILAHEMMHAWLRLKG--YPNL-RPDVEEGICQVLAHMWLESE 444 (513)
Q Consensus 403 ~gsilaHE~~Hawl~l~g--~~~L-~~~~eEG~cq~~a~~wl~~~ 444 (513)
...+||||+.|-|.. +. ...- ...+-|||..++.++|++..
T Consensus 312 i~~vIAHElAHqWFG-NlVT~~~W~dlWLnEGFAtY~e~~~~~~~ 355 (891)
T 3b34_A 312 IERVIGHEYFHNWTG-NRVTCRDWFQLSLKEGLTVFRDQEFSSDL 355 (891)
T ss_dssp HHHHHHHHHHTTTBT-TTEEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCcccchhhceehHHHHHHHHHHHHHHH
Confidence 357999999999965 21 1111 23689999999998888754
No 307
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=30.20 E-value=16 Score=25.81 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=26.4
Q ss_pred CccCCCCCcCCCC-CceEEccCCcccccccccccccCCCCCcccch
Q 010326 259 PRCCSCERMEPRD-TKYLSLDDGRKLCLECLDSAIMDTHECQPLYL 303 (513)
Q Consensus 259 F~C~~C~r~l~~g-~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~ 303 (513)
+.|..|...+..+ .....+.=|..||..|..+.+.....|.-|..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~ 51 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSG 51 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCC
Confidence 5566776655322 23445556777888887765544455555553
No 308
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=30.18 E-value=17 Score=29.26 Aligned_cols=20 Identities=5% Similarity=0.202 Sum_probs=16.7
Q ss_pred ccCCCCeeeeeccccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLIR 385 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~ 385 (513)
-|++||+|+.||+.++....
T Consensus 52 GL~~GD~I~~ing~~v~~~~ 71 (101)
T 1uez_A 52 GLRVGDQILRVNDKSLARVT 71 (101)
T ss_dssp TCCSSCCEEEETTEECSSCC
T ss_pred CCCCCCEEEEECCEECCCcC
Confidence 37899999999999887644
No 309
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=29.72 E-value=4.7 Score=36.94 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=19.1
Q ss_pred ccCCCCeeeeecccccccccccee
Q 010326 366 RIGAGYRLIDMITEPYRLIRRCEV 389 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~~eV 389 (513)
.|.+||+|+.|||.++....+.++
T Consensus 51 gl~~GD~I~~vng~~v~~~~~~~~ 74 (200)
T 2qt5_A 51 QLDVGDYIKAVNGINLAKFRHDEI 74 (200)
T ss_dssp SCCTTCEEEEETTEECTTSCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 578999999999999986644333
No 310
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=29.68 E-value=19 Score=31.23 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=27.0
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchHH
Q 010326 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (513)
Q Consensus 259 F~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~I 305 (513)
+.|..|...+. . -+.+.=|..||..|....+.....|.-|..+|
T Consensus 54 ~~C~iC~~~~~--~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFI--E-AVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCS--S-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred CCCcccCcccC--C-ceECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 45666665552 1 23445677788888776655566677777554
No 311
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=29.65 E-value=21 Score=28.79 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.8
Q ss_pred ccCCCCeeeeeccccccc
Q 010326 366 RIGAGYRLIDMITEPYRL 383 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~ 383 (513)
.|.+||+|+.|||.++..
T Consensus 17 GL~~GD~I~~InG~~v~~ 34 (91)
T 2kjp_A 17 KIEVGDKIISADGKNYQS 34 (91)
T ss_dssp CCCSSCEEEEETTBCCSS
T ss_pred cCCCCCEEEEECCEECCC
Confidence 478999999999999864
No 312
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.59 E-value=11 Score=29.00 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=31.5
Q ss_pred CCCccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchH
Q 010326 257 GTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLE 304 (513)
Q Consensus 257 ~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~ 304 (513)
.-..|..|...+..+.....+.=+..||..|..+.+.....|--|..+
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~ 69 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 69 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCc
Confidence 346688887766555555556667788888877765555566666543
No 313
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.50 E-value=25 Score=27.03 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=25.4
Q ss_pred ccCCCCCCCCCcceeecCCcc-ccccccccccCcccccCCCCcCC
Q 010326 188 RCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 231 (513)
Q Consensus 188 rCs~C~~~L~~~~F~~~dG~p-YCk~CY~~~f~pkC~~C~~~I~~ 231 (513)
.|..|...+..-.+.. =|.. ||..|... ..+|..|...|..
T Consensus 27 ~C~IC~~~~~~~~~~p-CgH~~~C~~C~~~--~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 27 LCKICMDRNIAIVFVP-CGHLVTCKQCAEA--VDKCPMCYTVITF 68 (75)
T ss_dssp SCSSSCSSCCCBCCSS-SCCCCBCHHHHHH--CSBCTTTCCBCCC
T ss_pred CCCcCCCCCCCEEEec-CCCHHHHHHHhhC--CCCCccCCceecC
Confidence 4555555444433322 2455 88888754 3789999998876
No 314
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=29.46 E-value=22 Score=32.64 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=17.1
Q ss_pred eeEeeecCchhhhhhhhhhccchhhH
Q 010326 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (513)
Q Consensus 390 ~~Il~l~glP~~L~gsilaHE~~Haw 415 (513)
.+|...++..-+.+..|+|||++|.+
T Consensus 120 ~gi~~~~~~~~~~~a~~~AHElGH~l 145 (197)
T 1bud_A 120 VGVIQDHSSVNRLVAITLAHEMAHNL 145 (197)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred cceEeecCCchhHHHHHHHHHHhhhc
Confidence 34555554433446789999999953
No 315
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=29.32 E-value=25 Score=27.78 Aligned_cols=46 Identities=17% Similarity=0.499 Sum_probs=27.5
Q ss_pred cccCCCCCCCCC--cceee-cCCcccccccccccc---CcccccCCCCcCCC
Q 010326 187 FRCHSCNLPITD--VEFSM-SGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (513)
Q Consensus 187 FrCs~C~~~L~~--~~F~~-~dG~pYCk~CY~~~f---~pkC~~C~~~I~~~ 232 (513)
+.|..|-.++.. ..|.. .=|..||..|+.... ...|..|.+.+...
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 455566555532 12211 136678888876543 45799999888764
No 316
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=29.26 E-value=11 Score=35.42 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=10.1
Q ss_pred ecCCcccccccccc
Q 010326 203 MSGNRPYHKHCYKE 216 (513)
Q Consensus 203 ~~dG~pYCk~CY~~ 216 (513)
..+|+++|..|+.+
T Consensus 189 ~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 189 LLNGKPVCKPDYYG 202 (204)
T ss_dssp EETTEEECHHHHHC
T ss_pred eeCCcEEChhhhcc
Confidence 35778888888754
No 317
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.15 E-value=19 Score=27.99 Aligned_cols=28 Identities=11% Similarity=0.402 Sum_probs=18.4
Q ss_pred CCcccccccccccc-----CcccccCCCCcCCC
Q 010326 205 GNRPYHKHCYKEQH-----HPKCDVCQNFIPTN 232 (513)
Q Consensus 205 dG~pYCk~CY~~~f-----~pkC~~C~~~I~~~ 232 (513)
=|..||..|....+ ..+|..|...+...
T Consensus 37 CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 37 CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 35677777775532 25788888877654
No 318
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=28.99 E-value=23 Score=32.59 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=17.0
Q ss_pred eeEeeecCchhhhhhhhhhccchhh
Q 010326 390 TAILILYGLPRLLTGSILAHEMMHA 414 (513)
Q Consensus 390 ~~Il~l~glP~~L~gsilaHE~~Ha 414 (513)
.+|+..++..-+.+..|+|||++|.
T Consensus 122 ~gi~~~~~~~~~~~a~~~AHElGH~ 146 (197)
T 1qua_A 122 VGLIQDHSAIPLLMAVTMAHELGHN 146 (197)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHH
T ss_pred cceEeccCCcchHHHHHHHHHHHHh
Confidence 3555566543344678999999995
No 319
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=28.87 E-value=21 Score=26.89 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=21.9
Q ss_pred ccCCCCCCCCCcceeecCCcccc-ccccc
Q 010326 188 RCHSCNLPITDVEFSMSGNRPYH-KHCYK 215 (513)
Q Consensus 188 rCs~C~~~L~~~~F~~~dG~pYC-k~CY~ 215 (513)
.|..|+..++...-+.++|+.|| +.|..
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~ 37 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACAD 37 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHH
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHc
Confidence 47788888877666678999999 67754
No 320
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=28.79 E-value=30 Score=28.06 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=7.9
Q ss_pred ccccCCCCcCCC
Q 010326 221 KCDVCQNFIPTN 232 (513)
Q Consensus 221 kC~~C~~~I~~~ 232 (513)
.|..|+..|...
T Consensus 53 FC~~C~~LiSkk 64 (81)
T 2jrp_A 53 FCQNGHGLISKK 64 (81)
T ss_dssp CCTTTTCCCCTT
T ss_pred eeccCCCEeecc
Confidence 467777777664
No 321
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.66 E-value=13 Score=28.96 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=31.1
Q ss_pred CCccCCCCCcCCCCCc-eEEccCCcccccccccccccCC---CCCcccchH
Q 010326 258 TPRCCSCERMEPRDTK-YLSLDDGRKLCLECLDSAIMDT---HECQPLYLE 304 (513)
Q Consensus 258 CF~C~~C~r~l~~g~~-y~~l~dgr~yC~~Cy~~~v~~t---~~C~~c~~~ 304 (513)
-+.|..|...+..+.. .+.+.=|..||..|..+.+... ..|--|..+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKI 65 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCC
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCc
Confidence 3678888887754332 4556678899999988765432 456666644
No 322
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=28.41 E-value=19 Score=30.37 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=17.2
Q ss_pred Ccccccccccccc---CcccccCCCCcCC
Q 010326 206 NRPYHKHCYKEQH---HPKCDVCQNFIPT 231 (513)
Q Consensus 206 G~pYCk~CY~~~f---~pkC~~C~~~I~~ 231 (513)
|..||..|....+ ...|..|...|..
T Consensus 71 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 71 QHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp SCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 5567877765432 2378888887765
No 323
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=28.39 E-value=24 Score=32.73 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=16.9
Q ss_pred eEeeecCchhhhhhhhhhccchhhH
Q 010326 391 AILILYGLPRLLTGSILAHEMMHAW 415 (513)
Q Consensus 391 ~Il~l~glP~~L~gsilaHE~~Haw 415 (513)
+|...++..-+.+..|+|||++|.+
T Consensus 126 gi~~~~~~~~~~~a~~~AHElGH~l 150 (203)
T 1kuf_A 126 AVVKDHSSKVFMVAVTMTHELGHNL 150 (203)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCcchhhHHHHHHHhhhhc
Confidence 4555555433456789999999953
No 324
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=28.38 E-value=6 Score=35.56 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=16.4
Q ss_pred ccCCCCeeeeecccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLI 384 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~ 384 (513)
+|++||+|+.|||.++...
T Consensus 53 ~l~~GD~I~~vng~~v~~~ 71 (196)
T 3gsl_A 53 RLRVNDSILFVNEVDVREV 71 (196)
T ss_dssp CCCTTCEEEEETTEECTTC
T ss_pred CCCCCCEEEEECCEECCCC
Confidence 3889999999999998754
No 325
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=28.15 E-value=62 Score=26.92 Aligned_cols=96 Identities=15% Similarity=0.231 Sum_probs=53.4
Q ss_pred CCcCcCCCcccccCceeeec--CccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCCcCCCCccc
Q 010326 159 YRICAGCNTEIGHGRYLSCM--EAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGL 236 (513)
Q Consensus 159 ~~~C~~C~~~I~~g~~l~al--g~~wHp~CFrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f~pkC~~C~~~I~~~~~g~ 236 (513)
...|..|+..-....+|... ++.||+.|..=.. .+ ...+.-+|..|. .|.+|++.-.... +
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~--~~-------~~~~~W~C~~C~------~C~~C~~~~~~~~--l 69 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV--TP-------LKRAGWQCPECK------VCQNCKQSGEDSK--M 69 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC--CT-------TTSTTCCCTTTC------CCTTTCCCSCCTT--E
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc--cc-------ccccCccCCcCC------cccccCccCCCCC--e
Confidence 35688887753222334443 4789988864321 11 134667888875 5999987654321 2
Q ss_pred eeeecccccccccCCCcccCCCCccCCCCCcCCCCCceEEccCCcccccccccc
Q 010326 237 IEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 290 (513)
Q Consensus 237 i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~ 290 (513)
+.= ..|+..||..|..= .+. .+..+.++|..|...
T Consensus 70 l~C--------d~C~~~yH~~Cl~p-----pl~------~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 70 LVC--------DTCDKGYHTFCLQP-----VMK------SVPTNGWKCKNCRIC 104 (111)
T ss_dssp EEC--------SSSCCEEEGGGSSS-----CCS------SCCSSCCCCHHHHCC
T ss_pred eEC--------CCCCcHHhHHhcCC-----ccc------cCCCCCcCCcCCcCc
Confidence 211 14666667655431 111 123568899988654
No 326
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=27.93 E-value=24 Score=32.57 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=17.4
Q ss_pred eeEeeecCchhhhhhhhhhccchhhH
Q 010326 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (513)
Q Consensus 390 ~~Il~l~glP~~L~gsilaHE~~Haw 415 (513)
.+|...++..-+.+..|+|||++|-+
T Consensus 122 ~gi~~~~~~~~~~~a~~~AHElGH~l 147 (202)
T 1yp1_A 122 AGIIQDFSAIPLLMAVVMAHELGHNL 147 (202)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred CceEeecCCchhHHHHHHHHHHHHhc
Confidence 35555654333446789999999953
No 327
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=27.57 E-value=13 Score=29.16 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=25.5
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchHHHHHHhhcCCccccccceEEee
Q 010326 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 326 (513)
Q Consensus 259 F~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~I~~f~e~l~~~i~~~iPv~LVe 326 (513)
..|-.|+..|. +....+.++|..|- +-.+|...||++|++
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~cg-----------------------~~YPI~dGIPvmL~~ 48 (68)
T 2hf1_A 9 LVCPLCKGPLV-----FDKSKDELICKGDR-----------------------LAFPIKDGIPMMLES 48 (68)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTTT-----------------------EEEEEETTEECCCGG
T ss_pred eECCCCCCcCe-----EeCCCCEEEcCCCC-----------------------cEecCCCCeeeeChh
Confidence 45666766552 23345778887772 225677889988876
No 328
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.50 E-value=11 Score=33.47 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=15.7
Q ss_pred cccccCcccccCCCCcCCCC
Q 010326 214 YKEQHHPKCDVCQNFIPTNS 233 (513)
Q Consensus 214 Y~~~f~pkC~~C~~~I~~~~ 233 (513)
|.......|..|+..|.-..
T Consensus 22 YAKSgRA~CK~C~~kI~Kge 41 (134)
T 2cs2_A 22 YAKSNRSTCKGCMEKIEKGQ 41 (134)
T ss_dssp ECSSSCCBCSSSCCBCCTTS
T ss_pred EeCCCCccchhcCCcccCCC
Confidence 55556678999999998875
No 329
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.33 E-value=47 Score=25.27 Aligned_cols=26 Identities=23% Similarity=0.640 Sum_probs=14.9
Q ss_pred ccccccccccc--cCcccccCCCCcCCC
Q 010326 207 RPYHKHCYKEQ--HHPKCDVCQNFIPTN 232 (513)
Q Consensus 207 ~pYCk~CY~~~--f~pkC~~C~~~I~~~ 232 (513)
..||..|..+. ....|..|...|...
T Consensus 38 H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 38 HLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 34455554332 234688888877764
No 330
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Probab=27.03 E-value=23 Score=36.90 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=19.5
Q ss_pred eeEeeecCchhhhhhhhhhccchhhH
Q 010326 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (513)
Q Consensus 390 ~~Il~l~glP~~L~gsilaHE~~Haw 415 (513)
.+|+..++...+.+..|+|||++|.+
T Consensus 124 ~gi~~d~~~~~~~~a~t~AHElGHnl 149 (419)
T 2dw0_A 124 TGIIQDYSEINLVVAVIMAHEMGHNL 149 (419)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEEecCCCcchhhhhhHHHHHHHHc
Confidence 46666677555667889999999954
No 331
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=26.74 E-value=9.8 Score=31.39 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.4
Q ss_pred cCCCCeeeeecccccccc
Q 010326 367 IGAGYRLIDMITEPYRLI 384 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~ 384 (513)
|.+||.|+.|||.++...
T Consensus 45 l~~GD~I~~ing~~v~~~ 62 (112)
T 1qau_A 45 IQAGDIILAVNDRPLVDL 62 (112)
T ss_dssp CCTTCEEEEETTEECTTS
T ss_pred CCCCCEEEEECCEECCCC
Confidence 389999999999988763
No 332
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=26.73 E-value=22 Score=37.14 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=18.5
Q ss_pred eeEeeecCchhhhhhhhhhccchhhH
Q 010326 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (513)
Q Consensus 390 ~~Il~l~glP~~L~gsilaHE~~Haw 415 (513)
.+|+..++.-.+.+..|+|||++|-+
T Consensus 133 ~gi~~d~~~~~~~~a~t~AHElGHnl 158 (427)
T 2ero_A 133 AGIVQDHSKIHHLVAIAMAHEMGHNL 158 (427)
T ss_dssp EEEEECCBSSHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCchhHHHHHHHHHHHHhc
Confidence 35556555445667889999999964
No 333
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.70 E-value=21 Score=26.67 Aligned_cols=44 Identities=23% Similarity=0.523 Sum_probs=32.7
Q ss_pred CCccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchHH
Q 010326 258 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (513)
Q Consensus 258 CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~I 305 (513)
-+.|..|...+.. +.+.=|..||..|..+.+.....|.-|..+|
T Consensus 15 ~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 15 EEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred CCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 4678888776632 5566788999999988766667788787655
No 334
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=26.62 E-value=26 Score=28.18 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.8
Q ss_pred ccCCCCeeeeeccccccc
Q 010326 366 RIGAGYRLIDMITEPYRL 383 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~ 383 (513)
.|.+||.|+.|||.++..
T Consensus 21 GL~~GD~Il~InG~~v~~ 38 (94)
T 2kl1_A 21 RLEAGDRIAAIDGQPINT 38 (94)
T ss_dssp TBCTTCEEEEETTBCCCC
T ss_pred CCCCCCEEEEECCEECCC
Confidence 478999999999999864
No 335
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=26.30 E-value=20 Score=27.43 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=32.7
Q ss_pred CCccCCCCCcCCCCCceEEccCCcccccccccccccC-CCCCcccchHH
Q 010326 258 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMD-THECQPLYLEI 305 (513)
Q Consensus 258 CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~-t~~C~~c~~~I 305 (513)
-|.|..|...+. +. +.+.-|..||..|....+.. ...|--|..++
T Consensus 8 ~~~C~IC~~~~~--~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 8 YFRCPISLELMK--DP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp SSSCTTTSCCCS--SE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred cCCCCCcccccc--CC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 488999998773 33 44578999999999887654 45677776543
No 336
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.03 E-value=14 Score=28.93 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=26.2
Q ss_pred CCccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchHHHHHHhhcCCccccccceEEee
Q 010326 258 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 326 (513)
Q Consensus 258 CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~I~~f~e~l~~~i~~~iPv~LVe 326 (513)
-..|-.|+..|. +....+.++|..|- +-.+|...||++|++
T Consensus 8 iL~CP~ck~~L~-----~~~~~~~LiC~~cg-----------------------~~YPI~dGIPvmL~~ 48 (68)
T 2jr6_A 8 ILVCPVTKGRLE-----YHQDKQELWSRQAK-----------------------LAYPIKDGIPYMLEN 48 (68)
T ss_dssp CCBCSSSCCBCE-----EETTTTEEEETTTT-----------------------EEEEEETTEECCCTT
T ss_pred heECCCCCCcCe-----EeCCCCEEEcCCCC-----------------------cEecCCCCeeeeChh
Confidence 356777776552 23345778887772 225677889988875
No 337
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=26.02 E-value=8.3 Score=32.74 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=17.5
Q ss_pred CCCCeeeeeccccccccccceee
Q 010326 368 GAGYRLIDMITEPYRLIRRCEVT 390 (513)
Q Consensus 368 ~~G~rilei~~~p~~~~~~~eV~ 390 (513)
.+||+|+.|||.++......++.
T Consensus 53 ~~GD~I~~ing~~v~~~~~~~~~ 75 (127)
T 1b8q_A 53 QAGDIILAVNDRPLVDLSYDSAL 75 (127)
T ss_dssp CTTTCCCEETTEECSSSCHHHHH
T ss_pred CCCCEEEEECCEECCCCCHHHHH
Confidence 89999999999998764333433
No 338
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=26.01 E-value=9.8 Score=32.64 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=15.0
Q ss_pred cccccCcccccCCCCcCCCC
Q 010326 214 YKEQHHPKCDVCQNFIPTNS 233 (513)
Q Consensus 214 Y~~~f~pkC~~C~~~I~~~~ 233 (513)
|.......|.+|+..|..+.
T Consensus 14 yAkS~Ra~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 14 YAKSNRSTCKGCMEKIEKGQ 33 (111)
T ss_dssp ECSSSCCBCTTTCCBCCTTC
T ss_pred EeecCCccccccCCCccCCc
Confidence 44455678999999998765
No 339
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=25.96 E-value=23 Score=36.95 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=19.1
Q ss_pred eeEeeecCchhhhhhhhhhccchhhH
Q 010326 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (513)
Q Consensus 390 ~~Il~l~glP~~L~gsilaHE~~Haw 415 (513)
.+|+..++...+.+..|+|||++|.+
T Consensus 126 ~gi~~d~~~~~~~~a~t~AHElGHnl 151 (427)
T 2e3x_A 126 VGIVQEQGNRNFKTAVIMAHELSHNL 151 (427)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCccceeeeehHHHHHHhh
Confidence 45666676555666789999999953
No 340
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=25.95 E-value=19 Score=30.58 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=17.5
Q ss_pred ccCCCCeeeeecccccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLIRR 386 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~~~ 386 (513)
.|.+||+|++|||.++.....
T Consensus 63 GL~~GD~I~~vng~~v~~~~~ 83 (128)
T 1uf1_A 63 GLKVGDQILEVNGRSFLNILH 83 (128)
T ss_dssp TCCTTCEEEEETTEECSSCCH
T ss_pred CCCCCCEEEEECCEECCCCCH
Confidence 378999999999999876543
No 341
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.83 E-value=13 Score=28.21 Aligned_cols=46 Identities=11% Similarity=0.242 Sum_probs=31.5
Q ss_pred CCccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchHH
Q 010326 258 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (513)
Q Consensus 258 CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~I 305 (513)
-+.|..|...+. ....+..=|..||..|..+.+.....|--|..+|
T Consensus 15 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 15 YILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp GGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 367888877663 2333336788999999987765566777777554
No 342
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.79 E-value=20 Score=27.13 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=33.0
Q ss_pred CCccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchHH
Q 010326 258 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (513)
Q Consensus 258 CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~I 305 (513)
-+.|..|...+. . -+.+.=|..||..|..+.+.....|.-|..+|
T Consensus 15 ~~~C~IC~~~~~--~-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 15 VPECAICLQTCV--H-PVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp CCBCSSSSSBCS--S-EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred CCCCccCCcccC--C-CEEccCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 467888887663 2 24456789999999988766667788887665
No 343
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=25.57 E-value=6.4 Score=36.00 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=15.9
Q ss_pred cCCCCeeeeecccccccc
Q 010326 367 IGAGYRLIDMITEPYRLI 384 (513)
Q Consensus 367 ~~~G~rilei~~~p~~~~ 384 (513)
|.+||+|+.|||.++...
T Consensus 55 l~~GD~I~~vng~~v~~~ 72 (196)
T 1p1d_A 55 LQIGDRVMAINGIPTEDS 72 (196)
T ss_dssp CCSSCCEEEETTBCSTTS
T ss_pred CCCCCEEEEECCEECCCC
Confidence 789999999999999753
No 344
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=25.13 E-value=28 Score=28.19 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=15.8
Q ss_pred ccCCCCeeeeeccccccc
Q 010326 366 RIGAGYRLIDMITEPYRL 383 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~ 383 (513)
-|.+||.|+.|||+++..
T Consensus 23 GL~~GD~I~~Ing~~v~~ 40 (100)
T 3i18_A 23 VLHAGDLITEIDGNAFKS 40 (100)
T ss_dssp TCCTTCEEEEETTBCCSS
T ss_pred CCCCCCEEEEECCEECCC
Confidence 478999999999999874
No 345
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=25.09 E-value=30 Score=28.76 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=31.2
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CcccccCCCCcCCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f---~pkC~~C~~~I~~~ 232 (513)
|.|..|...+.+- ....=|..||..|....+ ...|..|...|...
T Consensus 24 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILADP-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcCc-EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 5677777666542 334567889998876542 46899999988764
No 346
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=25.05 E-value=20 Score=29.27 Aligned_cols=46 Identities=17% Similarity=0.436 Sum_probs=26.0
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--C-cccccCCCCcCCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--H-PKCDVCQNFIPTN 232 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f--~-pkC~~C~~~I~~~ 232 (513)
+.|..|...+..-.....=|..||..|....+ . ..|..|...+...
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 45666655554322212336678888875432 2 5688888777543
No 347
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=24.75 E-value=11 Score=34.27 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=16.4
Q ss_pred ccCCCCeeeeeccccccc
Q 010326 366 RIGAGYRLIDMITEPYRL 383 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~ 383 (513)
.|++||+|++|||.++..
T Consensus 63 ~L~~GD~Il~vng~~v~~ 80 (206)
T 3r0h_A 63 RLKIFDHICDINGTPIHV 80 (206)
T ss_dssp CCCTTCEEEEETTEECCG
T ss_pred CCCCCCEEEEECCEEcCC
Confidence 488999999999999987
No 348
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=24.66 E-value=29 Score=30.90 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=31.8
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CcccccCCCCcCCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f---~pkC~~C~~~I~~~ 232 (513)
|.|..|...+..- +...-|..||..|..+.+ ..+|..|...|...
T Consensus 19 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 6777777776653 334568889998886643 34899998888764
No 349
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=24.54 E-value=26 Score=31.08 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=16.6
Q ss_pred Ccccccccccccc---CcccccCCCCcCCC
Q 010326 206 NRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (513)
Q Consensus 206 G~pYCk~CY~~~f---~pkC~~C~~~I~~~ 232 (513)
|..||..|....+ ...|..|...|...
T Consensus 97 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 97 FHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp SCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4567777764432 23688888777653
No 350
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=24.28 E-value=28 Score=27.27 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.5
Q ss_pred ccCCCCeeeeeccccccc
Q 010326 366 RIGAGYRLIDMITEPYRL 383 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~ 383 (513)
.|.+||.|+.|||.++..
T Consensus 21 Gl~~GD~I~~ing~~v~~ 38 (91)
T 2zpm_A 21 GLQAGDRIVXVDGQPLTQ 38 (91)
T ss_dssp TCCTTCEEEEETTEECCC
T ss_pred CCCCCCEEEEECCeEcCC
Confidence 477999999999998864
No 351
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=23.89 E-value=19 Score=32.06 Aligned_cols=45 Identities=18% Similarity=0.405 Sum_probs=31.6
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccccccccccC-CCCCcccchHH
Q 010326 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMD-THECQPLYLEI 305 (513)
Q Consensus 259 F~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~-t~~C~~c~~~I 305 (513)
+.|..|...+. .......=|..||..|..+.+.. ...|--|..+|
T Consensus 55 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 67888887763 23333467899999999887664 45677777554
No 352
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.29 E-value=30 Score=25.53 Aligned_cols=47 Identities=11% Similarity=0.259 Sum_probs=28.3
Q ss_pred cccCCCCC-CCCCcc---eeecCCccccccccccc---cCcccccCCCCcCCCC
Q 010326 187 FRCHSCNL-PITDVE---FSMSGNRPYHKHCYKEQ---HHPKCDVCQNFIPTNS 233 (513)
Q Consensus 187 FrCs~C~~-~L~~~~---F~~~dG~pYCk~CY~~~---f~pkC~~C~~~I~~~~ 233 (513)
+.|..|.. .+.+.. ....=|..||..|..+. ...+|..|+..+..+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 45666655 332211 22344677888887654 2357999999887653
No 353
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=23.24 E-value=30 Score=27.89 Aligned_cols=18 Identities=17% Similarity=-0.003 Sum_probs=15.7
Q ss_pred ccCCCCeeeeeccccccc
Q 010326 366 RIGAGYRLIDMITEPYRL 383 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~ 383 (513)
-|++||+|+.|||+++..
T Consensus 19 Gl~~GD~I~~ing~~v~~ 36 (95)
T 3id1_A 19 QIAPGTELKAVDGIETPD 36 (95)
T ss_dssp TCCTTCEEEEETTEECSS
T ss_pred CCCCCCEEEEECCEECCC
Confidence 478999999999998864
No 354
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=22.71 E-value=7.4 Score=41.42 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=16.5
Q ss_pred ccCCCCeeeeecccccccc
Q 010326 366 RIGAGYRLIDMITEPYRLI 384 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~~ 384 (513)
.|++||+|++|||.+++..
T Consensus 40 GL~~GD~Il~VNG~~v~~~ 58 (468)
T 3shw_A 40 GLEEGDQILRVNNVDFTNI 58 (468)
T ss_dssp TCCTTEEEEEETTEECTTC
T ss_pred CCCCCCEEEEECCEECCCC
Confidence 4789999999999998763
No 355
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=22.63 E-value=29 Score=32.31 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=14.7
Q ss_pred eEeeecCchhhhhhhhhhccchhh
Q 010326 391 AILILYGLPRLLTGSILAHEMMHA 414 (513)
Q Consensus 391 ~Il~l~glP~~L~gsilaHE~~Ha 414 (513)
+|...+|+. ++.|+|||++|-
T Consensus 132 gi~~d~~~~---~a~~~AHElGHn 152 (217)
T 3b8z_A 132 AVIEDDGLH---AAFTVAHEIGHL 152 (217)
T ss_dssp EEEECCSSS---HHHHHHHHHHHH
T ss_pred ceeccCCcc---hhhhhHhhhhhh
Confidence 455556653 456999999994
No 356
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=22.48 E-value=47 Score=27.03 Aligned_cols=33 Identities=24% Similarity=0.631 Sum_probs=26.5
Q ss_pred CCCcCcCCCcccccCceeeecCccccCCCcccC
Q 010326 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCH 190 (513)
Q Consensus 158 g~~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs 190 (513)
..-.|.-|.+.+.+..++++-...-|.=||-|+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeecccc
Confidence 445788888888777888888888888888886
No 357
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=21.58 E-value=32 Score=33.74 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=16.0
Q ss_pred eeEeeecCchhhhhhhhhhccchhhH
Q 010326 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (513)
Q Consensus 390 ~~Il~l~glP~~L~gsilaHE~~Haw 415 (513)
.+|+..+|+. +..|+|||++|-+
T Consensus 133 ~gi~~d~~~~---~a~t~AHElGHnl 155 (300)
T 2v4b_A 133 CSVIEDDGLQ---AAFTTAHELGHVF 155 (300)
T ss_dssp EEEEECSSTT---HHHHHHHHHHHHT
T ss_pred CceEcccCcc---ceehhhhhhhhhc
Confidence 3455666653 4669999999953
No 358
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=21.55 E-value=31 Score=28.91 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=29.3
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CcccccCCCCcCCC
Q 010326 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~dG~pYCk~CY~~~f---~pkC~~C~~~I~~~ 232 (513)
|.|..|...+..- ....=|..||..|....+ ...|..|...|...
T Consensus 19 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcCe-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 5666676665542 333457788888876532 23899999888764
No 359
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.42 E-value=22 Score=27.53 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=32.4
Q ss_pred CCccCCCCCcCCCCCceEEccCCcccccccccccccCCCCCcccchHH
Q 010326 258 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (513)
Q Consensus 258 CF~C~~C~r~l~~g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~I 305 (513)
-+.|..|...+. .. +.+.=|..||..|..+.+.....|--|..++
T Consensus 15 ~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 15 PFRCFICRQAFQ--NP-VVTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CSBCSSSCSBCC--SE-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCcCCCchhc--Ce-eEccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 477888888763 23 3466789999999988765566777777554
No 360
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=21.41 E-value=26 Score=31.79 Aligned_cols=90 Identities=12% Similarity=0.265 Sum_probs=42.5
Q ss_pred ccccccccc--ccCc--ccccCCCCcCCCCccceeeecccccccccCCCcccCCCCccCCCCCcCCC---CCceEEcc--
Q 010326 208 PYHKHCYKE--QHHP--KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR---DTKYLSLD-- 278 (513)
Q Consensus 208 pYCk~CY~~--~f~p--kC~~C~~~I~~~~~g~i~~~~hpfw~~~yCp~H~H~~CF~C~~C~r~l~~---g~~y~~l~-- 278 (513)
-+|..|... .|.+ .|..|...+.+.. |.+...+ +..+=+...|..=+.|..|..-+-. +..-+.+.
T Consensus 56 ~~C~~CH~g~~af~~~~~C~~CH~~~~~~~---i~~~~~~--~~V~F~H~~H~~~~~C~~CH~~v~~~~~~~~~~tm~~~ 130 (158)
T 3oue_A 56 KSCGACHNGKDAFSSASDCGKCHPGLKPAK---LTYKTSV--GEAYFDHDIHLSMFKCADCHTKVFKYRKGSAPATMADM 130 (158)
T ss_dssp CGGGGTBSSSSBCCTTSCHHHHCGGGCCCC---EEEEETT--EEEEECHHHHHTTCCGGGTBTTTBCSSTTSSCCCHHHH
T ss_pred CchhhhcCCcccCChhhhchhhhhcccccc---eEeecCC--CCccCChhHhCCCCChhhhccchhhcccCCCCcchhhh
Confidence 456666542 2333 5888876544432 2221100 0001011225433889999875421 11112111
Q ss_pred CCcccccccccccccCC--CCCcccc
Q 010326 279 DGRKLCLECLDSAIMDT--HECQPLY 302 (513)
Q Consensus 279 dgr~yC~~Cy~~~v~~t--~~C~~c~ 302 (513)
..-.+|..|+.-...++ ..|.-|.
T Consensus 131 ~~gk~Cg~CH~gk~Af~~~~~C~~CH 156 (158)
T 3oue_A 131 EKGKSCGVCHNGKDAFSVADDCVKCH 156 (158)
T ss_dssp HTTCGGGGTBTTTSBCCSSSCGGGTE
T ss_pred hccChhHhhcCCCccCCCcccHHHHc
Confidence 11259999997333333 3787775
No 361
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=21.27 E-value=58 Score=26.97 Aligned_cols=70 Identities=19% Similarity=0.504 Sum_probs=36.7
Q ss_pred CcCcCCCcccccCceeeecCccccCCCcccCCCCCCCCCc------ceeecCCccccccccccc--cCcccccCCCCcCC
Q 010326 160 RICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDV------EFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPT 231 (513)
Q Consensus 160 ~~C~~C~~~I~~g~~l~alg~~wHp~CFrCs~C~~~L~~~------~F~~~dG~pYCk~CY~~~--f~pkC~~C~~~I~~ 231 (513)
..|..|.+.+....+... ..-..=+.|..|...+... .....=|..||..|..+. ....|..|...|..
T Consensus 49 ~~CP~Cr~~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SBCTTTCCBCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 467777777744333221 1123445667776655421 022234566777766432 33467777776665
Q ss_pred C
Q 010326 232 N 232 (513)
Q Consensus 232 ~ 232 (513)
+
T Consensus 126 ~ 126 (133)
T 4ap4_A 126 K 126 (133)
T ss_dssp G
T ss_pred h
Confidence 4
No 362
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=20.96 E-value=50 Score=25.87 Aligned_cols=41 Identities=17% Similarity=0.410 Sum_probs=24.9
Q ss_pred ccCCCCCCCCCcceeecCCcc-ccccccccccCcccccCCCCcCC
Q 010326 188 RCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 231 (513)
Q Consensus 188 rCs~C~~~L~~~~F~~~dG~p-YCk~CY~~~f~pkC~~C~~~I~~ 231 (513)
.|..|.....+..+.. =|.. +|..|.... ..|..|...|..
T Consensus 20 ~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~~--~~CP~Cr~~i~~ 61 (79)
T 2yho_A 20 LCMVCCEEEINSTFCP-CGHTVCCESCAAQL--QSCPVCRSRVEH 61 (79)
T ss_dssp BCTTTSSSBCCEEEET-TCBCCBCHHHHTTC--SBCTTTCCBCCE
T ss_pred EeEEeCcccCcEEEEC-CCCHHHHHHHHHhc--CcCCCCCchhhC
Confidence 3555544444433332 2444 788887654 389999999876
No 363
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=20.81 E-value=1.7e+02 Score=20.77 Aligned_cols=20 Identities=45% Similarity=0.474 Sum_probs=15.1
Q ss_pred hhhhhhHHHHHHHhhccCCC
Q 010326 120 AQLEEDEQLAKAIQDSLRVD 139 (513)
Q Consensus 120 ~q~~edE~Laralqesl~~~ 139 (513)
.+-++++-|.++|.++++.-
T Consensus 24 ~eE~E~~llrKAIaESLn~~ 43 (46)
T 2rr9_C 24 QEEEEEELLRKAIAESLNSC 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35557788889999998754
No 364
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=20.80 E-value=25 Score=33.88 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=17.8
Q ss_pred eEeeecCchhhh-----hhhhhhccchhh
Q 010326 391 AILILYGLPRLL-----TGSILAHEMMHA 414 (513)
Q Consensus 391 ~Il~l~glP~~L-----~gsilaHE~~Ha 414 (513)
.|++-.||-.+| ..+|||||+.|.
T Consensus 83 ~I~v~~gLl~~l~~~~ELaaVLaHElgH~ 111 (253)
T 3c37_A 83 RVYVHTGLLKAADNETELAGVLAHEINHA 111 (253)
T ss_dssp EEEEEHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred eEEeeHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 455566776666 378999999996
No 365
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=20.79 E-value=9.4 Score=39.47 Aligned_cols=18 Identities=6% Similarity=0.191 Sum_probs=16.0
Q ss_pred ccCCCCeeeeeccccccc
Q 010326 366 RIGAGYRLIDMITEPYRL 383 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~ 383 (513)
-|++||+|++|||.+++.
T Consensus 48 GL~~GD~Il~VnG~~v~~ 65 (391)
T 3tsz_A 48 GLEEGDQILRVNNVDFTN 65 (391)
T ss_dssp TCCTTEEEEEETTEECTT
T ss_pred CCCCCCEEEEECCEECCC
Confidence 378999999999999975
No 366
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=20.67 E-value=29 Score=27.40 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=7.0
Q ss_pred CCccCCCCCcC
Q 010326 258 TPRCCSCERME 268 (513)
Q Consensus 258 CF~C~~C~r~l 268 (513)
-|.|..|++.+
T Consensus 73 ~~~C~~C~~~f 83 (106)
T 2ee8_A 73 PFKCQECGKGF 83 (106)
T ss_dssp TTSCSSSCCCC
T ss_pred CeECCCcCCcc
Confidence 36677776655
No 367
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=20.55 E-value=20 Score=28.42 Aligned_cols=42 Identities=19% Similarity=0.473 Sum_probs=23.9
Q ss_pred cccCCCCCCCCCcceeec-CCcccccccccccc----CcccccCCCCc
Q 010326 187 FRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQH----HPKCDVCQNFI 229 (513)
Q Consensus 187 FrCs~C~~~L~~~~F~~~-dG~pYCk~CY~~~f----~pkC~~C~~~I 229 (513)
|.|..|...+.+ ..... =|..||..|....+ ...|..|...+
T Consensus 14 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 14 LLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TEETTTTEECSS-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 566666655543 22223 26778888765432 24677776665
No 368
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron transfer, Fe reduction, GEO sulfurreducens; HET: HEM; 3.20A {Geobacter sulfurreducens}
Probab=20.47 E-value=39 Score=33.79 Aligned_cols=114 Identities=11% Similarity=0.315 Sum_probs=59.3
Q ss_pred cccCCCcccCCCCCCCCCcc-------eeecCCccccccccccc--cC--cccccCCCCcCCCCccceeee---cccccc
Q 010326 181 FWHPECFRCHSCNLPITDVE-------FSMSGNRPYHKHCYKEQ--HH--PKCDVCQNFIPTNSAGLIEYR---AHPFWL 246 (513)
Q Consensus 181 ~wHp~CFrCs~C~~~L~~~~-------F~~~dG~pYCk~CY~~~--f~--pkC~~C~~~I~~~~~g~i~~~---~hpfw~ 246 (513)
..|..=+.|..|...+.... +........|..|.... |. ..|..|.....+.. |.+. +..+|.
T Consensus 182 ~~H~~~~~C~~CH~~~~~~~~g~~~~t~~~~~~~~~C~~CH~~~~~~~~~~~C~~CH~~~~~~~---l~~~~~~g~v~f~ 258 (318)
T 3ov0_A 182 EFHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAK---LTYKTSVGEAYFD 258 (318)
T ss_dssp HHHHTTCCGGGSTTTSCCSSSCSCCCCHHHHTTTCGGGGTBTTTSBSCSSSCTTTTSSSCCCCC---CCEEETTEEECCC
T ss_pred eeeecceecccccceeeeecccccccchhhhhCCCccccccCCchhccccCChhhhcCCCCCCc---eeEeccCCceEec
Confidence 34544478899988764321 11123456898888642 32 37999987543322 2222 112222
Q ss_pred cccCCCcccCCCCccCCCCCcCCCC---CceEEcc--CCcccccccccccccCC--CCCcccc
Q 010326 247 QKYCPSHERDGTPRCCSCERMEPRD---TKYLSLD--DGRKLCLECLDSAIMDT--HECQPLY 302 (513)
Q Consensus 247 ~~yCp~H~H~~CF~C~~C~r~l~~g---~~y~~l~--dgr~yC~~Cy~~~v~~t--~~C~~c~ 302 (513)
+. .|..-..|..|....... ...+.+. ..-.+|..|+.....++ ..|.-|.
T Consensus 259 H~-----~H~~~~~C~~CH~~~~~~~~~~~~~~m~~~~~~~~C~~CH~~~~af~~~~~C~~CH 316 (318)
T 3ov0_A 259 HD-----IHLSMFKCADCHTKVFKYRKGSAPATMADMEKGKSCGVCHNGKDAFSVADDCVKCH 316 (318)
T ss_dssp HH-----HHTTTCCTTTSTTTSCCSSSCCCCCCTTHHHHTCGGGGTCSSSSSCCSSSCHHHHE
T ss_pred cc-----cceeeeeeccccccccccccCCCccchhhhhcCCccccccCCcccccccCCHHHhh
Confidence 11 244447788888765321 2222121 12258999997543333 2566553
No 369
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.26 E-value=15 Score=27.17 Aligned_cols=47 Identities=19% Similarity=0.413 Sum_probs=30.3
Q ss_pred CCccCCCCCcCCC----CCceEEccCCcccccccccccccCCCCCcccchH
Q 010326 258 TPRCCSCERMEPR----DTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLE 304 (513)
Q Consensus 258 CF~C~~C~r~l~~----g~~y~~l~dgr~yC~~Cy~~~v~~t~~C~~c~~~ 304 (513)
-+.|..|...+.. +...+.+.=|..||..|..+.+.....|--|..+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 65 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 65 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCc
Confidence 4667777765532 2233556678899999988766555566666543
No 370
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=20.15 E-value=37 Score=27.81 Aligned_cols=18 Identities=6% Similarity=0.054 Sum_probs=15.6
Q ss_pred ccCCCCeeeeeccccccc
Q 010326 366 RIGAGYRLIDMITEPYRL 383 (513)
Q Consensus 366 ~~~~G~rilei~~~p~~~ 383 (513)
-|.+||.|+.|||.++..
T Consensus 52 Gl~~GD~I~~ing~~v~~ 69 (113)
T 2pzd_A 52 GLRPGDVILAIGEQMVQN 69 (113)
T ss_dssp TCCTTCEEEEETTEECCS
T ss_pred CCCCCCEEEEECCEECCC
Confidence 478999999999998863
Done!