BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010330
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 96.7 bits (239), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 56/73 (76%)
Query: 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKR 102
G DYY TL + + A+ +EIK +YR+ A +YHPD NK PGAEEKFKEI+ AY+VLSD KR
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 103 SVYDRFGEAGITG 115
++DR+GE G+ G
Sbjct: 62 EIFDRYGEEGLKG 74
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 85.1 bits (209), Expect = 8e-17, Method: Composition-based stats.
Identities = 43/74 (58%), Positives = 54/74 (72%), Gaps = 4/74 (5%)
Query: 37 GMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVL 96
GM++ T YY L V+ NAT +E+K +YRKLA KYHPD K+P EKFK+IS AYEVL
Sbjct: 1 GMVKE--TTYYDVLGVKPNATQEELKKAYRKLALKYHPD--KNPNEGEKFKQISQAYEVL 56
Query: 97 SDDEKRSVYDRFGE 110
SD +KR +YD+ GE
Sbjct: 57 SDAKKRELYDKGGE 70
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/63 (53%), Positives = 51/63 (80%)
Query: 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
DYY+ + V+ L+ IKT+YR+LARKYHPD++K P AE +FKE++ A+EVLSD+++R+
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 105 YDR 107
YD+
Sbjct: 66 YDQ 68
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%)
Query: 39 IRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSD 98
+ A D Y L V + A+ +IK +Y+KLAR++HPD NK PGAE++F +IS AYE+LS+
Sbjct: 12 LSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSN 71
Query: 99 DEKRSVYDRFGEAGITG 115
+EKR+ YD +G +G
Sbjct: 72 EEKRTNYDHYGSGPSSG 88
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%)
Query: 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
DYY+ L V+ L+ IKT+YR+LARKYHPD++K AE KFK+++ A+EVL D+++R+
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 105 YDRF 108
YD+
Sbjct: 89 YDQL 92
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Query: 256 GNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL 315
G E ++ +++ V IP GV +G ++++G+G GDL++ +H+ G
Sbjct: 173 GMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGH 232
Query: 316 NLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGD 375
NL + + EA LG + V T++ L +P G Q G ++++ G + + + GD
Sbjct: 233 NLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKG---LVSKTHTGD 289
Query: 376 HLFIVNVLIPKDISDPERALVEEIA 400
++ +++P + R L +++A
Sbjct: 290 LFAVIKIVMPTKPDEKARELWQQLA 314
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG-AEEKFKEISSAYEVLSDDE 100
A DYY L V + A +EI+ +Y++LA KYHPD N+ AE KFKEI AYEVL+D +
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 101 KRSVYDRFGEAG 112
KR+ YD++G A
Sbjct: 61 KRAAYDQYGHAA 72
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 46 YYSTLNVRQNATLQEIKTSYRKLARKYHPDIN--KSPGAEEKFKEISSAYEVLSDDEKRS 103
YY L+V ++A+ +IK +YR+ A ++HPD N AE+KFKE++ AYEVLSD KR
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 104 VYDRFGEAGITGEYDGLSNTSQG 126
+YDR+G G+TG G S G
Sbjct: 64 IYDRYGREGLTGTGTGPSRAEAG 86
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 77.8 bits (190), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 35 RRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN-KSPGAEEKFKEISSAY 93
R+ + +G Y L + +NAT +IK SYRKLA KYHPD N +P A +KFKEI++A+
Sbjct: 8 RQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAH 67
Query: 94 EVLSDDEKRSVYDRFGEAGI 113
+L+D KR++YD++G G+
Sbjct: 68 AILTDATKRNIYDKYGSLGL 87
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/67 (53%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Query: 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRS 103
T YY L V+ +A+ E+K +YRK+A K+HPD K+P E+FK+IS AYEVLSD++KR
Sbjct: 8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPD--KNPDGAEQFKQISQAYEVLSDEKKRQ 65
Query: 104 VYDRFGE 110
+YD+ GE
Sbjct: 66 IYDQGGE 72
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG-AEEKFKEISSAYEVLSDDE 100
A DYY L V + A +EI+ +Y++LA KYHPD N+ AE KFKEI AYEVL+D +
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 101 KRSVYDRFGEAG 112
KR+ YD++G A
Sbjct: 61 KRAAYDQYGHAA 72
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRS 103
DYY L V +NA+ +EIK +Y +LA+KYHPD NK P A+EKF +++ AYEVLSD+ KR
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 104 VYDRFGEAGITG 115
YD +G +G
Sbjct: 68 QYDAYGSGPSSG 79
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG-AEEKFKEISSAYEVLSDDE 100
A DYY L V + A +EI+ +Y++LA KYHPD N+ AE KFKEI AYEVL+D +
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 101 KRSVYDRFGEAG 112
KR+ YD++G A
Sbjct: 61 KRAAYDQYGHAA 72
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 77.0 bits (188), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
DYY L V + A+ +++K +YR+LA K+HPD N +PGA E FK I +AY VLS+ EKR
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 105 YDRFGEAGITG 115
YD+FG +G
Sbjct: 68 YDQFGSGPSSG 78
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 77.0 bits (188), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 46 YYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVY 105
YY L V ++A+ ++IK ++ KLA KYHPD NKSP AE KF+EI+ AYE LSD +R Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 106 DRFGEAGITGEYDGLSNTSQG 126
D G + T G S S G
Sbjct: 69 DTLGHSAFTSG-KGQSGPSSG 88
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN--KSPGAEEKFKEISSAYEVLSDDEK 101
DYY L+V + A+ + IK +YRKLA K+HPD N AE +FK+++ AYEVLSD +K
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 102 RSVYDRFGEAGITG 115
R +YDR+G +G
Sbjct: 69 RDIYDRYGSGPSSG 82
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 71.6 bits (174), Expect = 9e-13, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRS 103
T Y L V +A QE+K YRK A KYHPD K G EKFKEIS A+E+L+D +KR
Sbjct: 8 TKLYDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKFKEISEAFEILNDPQKRE 65
Query: 104 VYDRFG 109
+YD++G
Sbjct: 66 IYDQYG 71
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN--KSPGAEEKFKEISSAYEVLSDDEK 101
+YY L V+ +A+ ++IK +YRKLA ++HPD N AE+KFK +S AYEVLSD +K
Sbjct: 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 102 RSVYDRFG 109
RS+YDR G
Sbjct: 69 RSLYDRAG 76
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRS 103
++YS L V + A+ +EI+ +++KLA K HPD N +P A F +I+ AYEVL D++ R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 104 VYDRFGEAGIT----GEYDGLS 121
YD++GE G+ G+Y+ S
Sbjct: 82 KYDKYGEKGLEDNQGGQYESWS 103
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRS 103
++YS L V + A+ +EI+ +++KLA K HPD N +P A F +I+ AYEVL D++ R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 104 VYDRFGEAGIT----GEYDGLS 121
YD++GE G+ G+Y+ S
Sbjct: 63 KYDKYGEKGLEDNQGGQYESWS 84
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 14/238 (5%)
Query: 166 DIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQR 225
DI++++ S EE G + ++ C C G G K ++ C +C G+G T++
Sbjct: 13 DIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKG-AVKKCTSCNGQGIKFVTRQ 71
Query: 226 TPFGLISQVSTCSKCGGDGKII--IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR 283
+ + C C G G II D C+ C G ++ ++V + PG+ +G + +
Sbjct: 72 MGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFK 131
Query: 284 GEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG-- 341
GE + + GD+ + + RDG +L + +D AI G +E V G
Sbjct: 132 GEAD-QAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDW 190
Query: 342 MKDLRIPSGV-QPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEE 398
+K +P V PG ++ G+P P G N++I I DPE E
Sbjct: 191 LKVGIVPGEVIAPGMRKVIEGKGMP---IPKYGG----YGNLIIKFTIKDPENHFTSE 241
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 47 YSTLNV-RQNATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSDDEK 101
Y L V R+ Q++ +YR LARK+HPD K+ AEE+F+ I++AYE L DDE
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 102 RSVYDRF 108
++ YD +
Sbjct: 78 KTNYDYY 84
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 35 RRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPD----INKSPGAEEKFKEIS 90
+R + ++ DYY L V++NA QEI +YRKLA ++HPD + AE+KF +I+
Sbjct: 373 QRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIA 432
Query: 91 SAYEVLSDDEKRSVYD 106
+A EVLSD E R +D
Sbjct: 433 AAKEVLSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 35 RRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPD----INKSPGAEEKFKEIS 90
+R + ++ DYY L V++NA QEI +YRKLA ++HPD + AE+KF +I+
Sbjct: 373 QRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIA 432
Query: 91 SAYEVLSDDEKRSVYD 106
+A EVLSD E R +D
Sbjct: 433 AAKEVLSDPEMRKKFD 448
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 266 MKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDY 325
++V I PG +G + GEG+ + + GDL + + RD +L K+++
Sbjct: 44 VEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPL 103
Query: 326 TEAILGTSMEVETVEGMKDLRIP--SGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVL 383
A+ G + V T++ ++L+IP V P + G P N P +GD + ++
Sbjct: 104 VRALTGFTCPVTTLDN-RNLQIPIKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDIC 162
Query: 384 IPKDISDPERALVEE 398
PK ++ ++ L++E
Sbjct: 163 FPKSLTPEQKKLIKE 177
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 2/147 (1%)
Query: 253 RCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHR 312
R G +G K + + + PG G + + +G+++ + L + R
Sbjct: 26 RKGPHG-ASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84
Query: 313 DGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPDINNPS 371
DG +L + + + E++LG S ++T++G L VQP T G+P NPS
Sbjct: 85 DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPS 144
Query: 372 VRGDHLFIVNVLIPKDISDPERALVEE 398
RG+ + V P ++D ++ ++E
Sbjct: 145 QRGNLIVKYKVDYPISLNDAQKRAIDE 171
>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The
Escherichia Coli Chaperone Protein Dnaj
Length = 79
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 186 IEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGK 245
I + E CD C G+GAK Q+C C G G V Q G + TC C G G
Sbjct: 6 IRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGT 61
Query: 246 IIIDHCRRCGGNGEVQ 261
+I D C +C G+G V+
Sbjct: 62 LIKDPCNKCHGHGRVE 77
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 253 RCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHR 312
R G +G K + + + PG G + + +G+++ + L + R
Sbjct: 26 RKGPHG-ASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84
Query: 313 DGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPDINNPS 371
DG +L + + + E++LG S ++T++G L VQP T G+P NPS
Sbjct: 85 DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPS 144
Query: 372 VRGDHLFIVNVLIPKDISDPERALVE 397
RG+ + V P ++D ++ ++
Sbjct: 145 QRGNLIVKYKVDYPISLNDAQKRAID 170
>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj
Subfamily A Menber 3
Length = 104
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 171 LHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRT-PFG 229
+ L+F ++ G + V+ +TC+ C G G + +Q C C G G ++T T PF
Sbjct: 8 MELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG--METINTGPFV 65
Query: 230 LISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKR 264
+ STC +CGG G III C C G G+ + K+
Sbjct: 66 M---RSTCRRCGGRGSIIISPCVVCRGAGQAKQKK 97
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKR 102
T Y L V AT +IK +Y + YHPD N S A E+F IS AY VL R
Sbjct: 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76
Query: 103 SVYDR 107
YDR
Sbjct: 77 RKYDR 81
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAE-----EKFKEISSAYEVLS 97
D+YS L +A + ++K Y+KL YHPD + P +KF EI A+++L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 98 DDEKRSVYD 106
++E + YD
Sbjct: 77 NEETKKKYD 85
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRS 103
DYY+ L + +++++I ++ A + HPD + ++P A E F+++ A E+L+++E R+
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 104 VYDRF 108
YD +
Sbjct: 81 RYDHW 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAE-----EKFKEISSAYEVLS 97
D+YS L +A + ++K Y+KL YHPD + P +KF EI A+++L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 98 DDEKRSVYD 106
++E + YD
Sbjct: 71 NEETKREYD 79
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVL 96
D + L V+ A+ E+ +YRKLA HPD +PG+E+ FK + +A L
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 293 SLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG------MKDLR 346
++ D+ L RDG ++ + EA+ G ++ V T++G KD+
Sbjct: 80 NIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDV- 138
Query: 347 IPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEI 399
++PG K+ G+P P RGD + V+ P+ I R ++E++
Sbjct: 139 ----IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 187
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 293 SLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG------MKDLR 346
++ D+ L RDG ++ + EA+ G ++ V T++G KD+
Sbjct: 73 NIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDV- 131
Query: 347 IPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEI 399
++PG K+ G+P P RGD + V+ P+ I R ++E++
Sbjct: 132 ----IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 180
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 293 SLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG------MKDLR 346
++ D+ L RDG ++ + EA+ G ++ V T++G KD+
Sbjct: 71 NIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDV- 129
Query: 347 IPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEI 399
++PG K+ G+P P RGD + V+ P+ I R ++E++
Sbjct: 130 ----IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 178
>pdb|3EIN|A Chain A, Delta Class Gst
pdb|3MAK|A Chain A, Crystal Structure Of Glutathione Transferase Dmgstd1 From
Drosophila Melanogaster, In Complex With Glutathione
Length = 209
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 60 EIKTSYRKLARKYHPDI-NKSPGAEEKFKEISSAYEVLS 97
++ T Y+ A Y+P + K+P E FK+I +A+E L+
Sbjct: 101 DMGTLYQSFANYYYPQVFAKAPADPEAFKKIEAAFEFLN 139
>pdb|3I38|A Chain A, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|B Chain B, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|C Chain C, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|D Chain D, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|E Chain E, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|F Chain F, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|G Chain G, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|H Chain H, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|I Chain I, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|J Chain J, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|K Chain K, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|L Chain L, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 109
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 263 KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHV 304
K S+ + +PPG G ++I+G+G + + GDLF + +
Sbjct: 37 KESILLTVPPGSQAGQRLRIKGKGLVSKTHT--GDLFAVIKI 76
>pdb|3F6F|A Chain A, Crystal Structure Of Glutathione Transferase Dmgstd10 From
Drosophila Melanogaster
pdb|3GH6|A Chain A, Crystal Structure Of Glutathione Transferase Dmgstd10 From
Drosophila Melanogaster, In Complex With Glutathione
Length = 210
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 60 EIKTSYRKLARKYHPDIN-KSPGAEEKFKEISSAYEVLS 97
++ T Y+ + Y+P I K P EE +K+I A+E L+
Sbjct: 101 DMGTLYKSFSEYYYPQIFLKKPANEENYKKIEVAFEFLN 139
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 61 IKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVY 105
++ YR+L ++HPD+ + G+E+ ++ AY L D +RS Y
Sbjct: 35 LRKEYRQLQAQHHPDMAQQ-GSEQS-STLNQAYHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 61 IKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVY 105
++ YR+L ++HPD+ + G+E+ ++ AY L D +RS Y
Sbjct: 27 LRKEYRQLQAQHHPDMAQQ-GSEQS-STLNQAYHTLKDPLRRSQY 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,643,373
Number of Sequences: 62578
Number of extensions: 591701
Number of successful extensions: 1354
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1276
Number of HSP's gapped (non-prelim): 45
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)