Query 010330
Match_columns 513
No_of_seqs 315 out of 2628
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 23:16:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.6E-97 3E-102 761.2 36.5 348 42-403 2-351 (371)
2 PRK14296 chaperone protein Dna 100.0 1.2E-84 2.6E-89 680.7 37.5 347 43-403 3-362 (372)
3 PRK14287 chaperone protein Dna 100.0 1.2E-82 2.6E-87 665.7 38.5 346 43-403 3-349 (371)
4 PRK14298 chaperone protein Dna 100.0 1.5E-82 3.3E-87 665.9 38.2 350 40-403 1-352 (377)
5 PRK14276 chaperone protein Dna 100.0 3.2E-82 7E-87 664.7 38.7 347 43-402 3-356 (380)
6 PRK14280 chaperone protein Dna 100.0 9.8E-82 2.1E-86 660.2 38.8 348 43-403 3-354 (376)
7 PRK14278 chaperone protein Dna 100.0 1.2E-81 2.6E-86 659.7 38.9 349 43-403 2-351 (378)
8 PTZ00037 DnaJ_C chaperone prot 100.0 2.9E-82 6.3E-87 669.6 34.4 358 20-404 4-368 (421)
9 PRK14277 chaperone protein Dna 100.0 1.2E-81 2.6E-86 661.5 37.8 354 40-403 1-366 (386)
10 PRK14288 chaperone protein Dna 100.0 1.2E-81 2.6E-86 657.7 35.4 342 43-402 2-345 (369)
11 PRK14286 chaperone protein Dna 100.0 1.5E-81 3.3E-86 657.6 35.4 348 43-403 3-358 (372)
12 PRK14297 chaperone protein Dna 100.0 2.2E-80 4.7E-85 651.1 36.6 350 43-403 3-359 (380)
13 PRK14284 chaperone protein Dna 100.0 5.4E-80 1.2E-84 650.1 37.2 347 44-403 1-367 (391)
14 PRK14281 chaperone protein Dna 100.0 1E-79 2.2E-84 648.9 38.1 357 43-402 2-372 (397)
15 PRK14282 chaperone protein Dna 100.0 2.1E-79 4.5E-84 641.4 37.6 351 42-404 2-365 (369)
16 PRK14279 chaperone protein Dna 100.0 1.1E-79 2.3E-84 647.4 34.6 353 43-403 8-379 (392)
17 PRK14285 chaperone protein Dna 100.0 2.7E-79 5.8E-84 639.2 34.9 346 43-405 2-356 (365)
18 PRK14295 chaperone protein Dna 100.0 9.1E-79 2E-83 639.7 35.9 352 42-403 7-373 (389)
19 PRK14301 chaperone protein Dna 100.0 1E-78 2.2E-83 636.5 34.5 344 43-403 3-351 (373)
20 PRK14294 chaperone protein Dna 100.0 2.4E-78 5.3E-83 632.7 35.4 345 43-403 3-351 (366)
21 PRK14289 chaperone protein Dna 100.0 1.3E-77 2.8E-82 631.4 37.4 358 41-402 2-364 (386)
22 PRK14300 chaperone protein Dna 100.0 1.2E-77 2.6E-82 628.5 36.6 346 44-402 3-352 (372)
23 PRK10767 chaperone protein Dna 100.0 1.5E-77 3.2E-82 628.2 37.4 346 42-402 2-348 (371)
24 PRK14283 chaperone protein Dna 100.0 1.5E-77 3.3E-82 629.1 36.3 356 40-402 1-356 (378)
25 PRK14291 chaperone protein Dna 100.0 1.9E-77 4.1E-82 629.0 35.7 357 43-406 2-374 (382)
26 TIGR02349 DnaJ_bact chaperone 100.0 2E-77 4.4E-82 623.8 35.2 347 45-402 1-353 (354)
27 PRK14292 chaperone protein Dna 100.0 1.5E-76 3.2E-81 620.6 37.6 347 44-403 2-349 (371)
28 PRK14293 chaperone protein Dna 100.0 1.4E-76 3E-81 621.1 35.3 354 43-403 2-355 (374)
29 PRK14290 chaperone protein Dna 100.0 6.1E-76 1.3E-80 614.4 36.5 351 44-405 3-359 (365)
30 KOG0712 Molecular chaperone (D 100.0 1.8E-70 4E-75 554.8 24.4 329 43-400 3-337 (337)
31 PRK14299 chaperone protein Dna 100.0 1.4E-60 3.1E-65 484.5 28.3 276 43-403 3-287 (291)
32 PRK10266 curved DNA-binding pr 100.0 1.6E-58 3.5E-63 472.7 30.0 287 43-403 3-294 (306)
33 KOG0715 Molecular chaperone (D 100.0 5E-44 1.1E-48 361.4 13.8 245 45-327 44-288 (288)
34 KOG0713 Molecular chaperone (D 100.0 1.3E-43 2.9E-48 355.1 8.9 313 41-390 13-328 (336)
35 TIGR03835 termin_org_DnaJ term 100.0 1.7E-41 3.6E-46 367.7 24.9 125 259-387 692-817 (871)
36 KOG0714 Molecular chaperone (D 99.9 5.5E-23 1.2E-27 206.0 15.4 264 43-366 2-305 (306)
37 PF01556 CTDII: DnaJ C termina 99.8 4.3E-21 9.3E-26 159.2 7.7 80 316-395 1-81 (81)
38 PTZ00341 Ring-infected erythro 99.8 2.3E-19 5E-24 199.9 6.5 78 38-115 567-644 (1136)
39 KOG0716 Molecular chaperone (D 99.8 3.4E-19 7.3E-24 174.4 4.8 72 43-114 30-102 (279)
40 COG2214 CbpA DnaJ-class molecu 99.8 6.9E-18 1.5E-22 161.5 13.1 70 40-109 2-73 (237)
41 KOG0691 Molecular chaperone (D 99.7 7.2E-19 1.6E-23 177.4 4.3 91 41-139 2-93 (296)
42 KOG0718 Molecular chaperone (D 99.7 2.8E-18 6E-23 177.9 5.2 72 43-114 8-83 (546)
43 PF00226 DnaJ: DnaJ domain; I 99.7 2.2E-17 4.7E-22 130.4 4.8 62 45-106 1-64 (64)
44 KOG0717 Molecular chaperone (D 99.7 1.4E-17 3.1E-22 172.7 3.8 75 42-116 6-82 (508)
45 KOG0624 dsRNA-activated protei 99.7 9.6E-17 2.1E-21 161.8 7.6 75 40-115 390-468 (504)
46 KOG0719 Molecular chaperone (D 99.7 5.5E-17 1.2E-21 155.5 5.1 69 43-111 13-84 (264)
47 PHA03102 Small T antigen; Revi 99.6 8.9E-17 1.9E-21 147.9 5.1 84 44-139 5-90 (153)
48 smart00271 DnaJ DnaJ molecular 99.6 1.8E-15 3.8E-20 117.6 5.8 58 44-101 1-60 (60)
49 KOG0721 Molecular chaperone (D 99.6 3.1E-15 6.6E-20 142.4 6.4 71 43-113 98-169 (230)
50 cd06257 DnaJ DnaJ domain or J- 99.6 5.5E-15 1.2E-19 112.7 5.9 54 45-98 1-55 (55)
51 KOG0550 Molecular chaperone (D 99.5 4.4E-15 9.5E-20 152.9 5.4 94 37-136 366-461 (486)
52 PRK10767 chaperone protein Dna 99.5 3.5E-13 7.7E-18 141.9 14.5 67 255-321 278-345 (371)
53 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.5 7.1E-14 1.5E-18 111.5 5.9 65 194-258 1-66 (66)
54 COG0484 DnaJ DnaJ-class molecu 99.5 1E-13 2.2E-18 143.5 8.2 119 190-320 158-346 (371)
55 KOG0722 Molecular chaperone (D 99.4 7.4E-14 1.6E-18 135.4 3.0 67 42-108 31-97 (329)
56 PRK14282 chaperone protein Dna 99.4 1E-12 2.3E-17 138.2 9.2 67 255-321 292-360 (369)
57 PRK05014 hscB co-chaperone Hsc 99.4 9.1E-13 2E-17 124.3 6.6 64 44-107 1-72 (171)
58 PRK01356 hscB co-chaperone Hsc 99.3 9.7E-13 2.1E-17 123.5 5.9 64 44-107 2-71 (166)
59 KOG0720 Molecular chaperone (D 99.3 6E-13 1.3E-17 138.6 4.7 65 43-107 234-298 (490)
60 PRK14290 chaperone protein Dna 99.3 2.4E-12 5.1E-17 135.4 9.2 120 190-321 164-353 (365)
61 PRK14298 chaperone protein Dna 99.3 2.7E-12 6E-17 135.4 8.4 67 255-321 281-348 (377)
62 PRK14294 chaperone protein Dna 99.3 3.2E-12 6.9E-17 134.4 8.1 68 255-322 280-348 (366)
63 PRK00294 hscB co-chaperone Hsc 99.3 3.2E-12 6.9E-17 120.7 6.9 66 42-107 2-75 (173)
64 PRK14285 chaperone protein Dna 99.3 5E-12 1.1E-16 132.9 8.9 66 255-320 282-349 (365)
65 PRK03578 hscB co-chaperone Hsc 99.3 3.9E-12 8.5E-17 120.5 6.5 65 43-107 5-77 (176)
66 PTZ00100 DnaJ chaperone protei 99.3 5.2E-12 1.1E-16 110.9 4.9 52 43-97 64-115 (116)
67 PRK14301 chaperone protein Dna 99.3 1.1E-11 2.3E-16 130.8 8.1 66 255-320 280-346 (373)
68 PRK14300 chaperone protein Dna 99.2 1.6E-11 3.4E-16 129.5 9.1 63 255-317 281-345 (372)
69 PRK14284 chaperone protein Dna 99.2 1.4E-11 3E-16 130.7 8.5 66 255-320 294-362 (391)
70 PRK14287 chaperone protein Dna 99.2 1.3E-11 2.7E-16 130.2 8.0 66 255-320 278-344 (371)
71 PRK14278 chaperone protein Dna 99.2 2.5E-11 5.4E-16 128.2 9.1 60 255-314 279-340 (378)
72 TIGR02349 DnaJ_bact chaperone 99.2 1.4E-11 3E-16 129.1 7.0 64 255-318 283-347 (354)
73 PRK14276 chaperone protein Dna 99.2 2.3E-11 5E-16 128.6 8.3 61 255-315 286-347 (380)
74 PRK14288 chaperone protein Dna 99.2 3.1E-11 6.7E-16 127.1 8.2 116 190-317 155-338 (369)
75 PRK14281 chaperone protein Dna 99.2 3.5E-11 7.6E-16 127.9 8.6 113 190-314 178-362 (397)
76 PRK14279 chaperone protein Dna 99.2 4.2E-11 9.1E-16 127.0 8.7 112 190-314 189-368 (392)
77 PRK14286 chaperone protein Dna 99.2 4.3E-11 9.4E-16 126.1 8.6 64 255-318 286-351 (372)
78 PRK14280 chaperone protein Dna 99.2 4.8E-11 1E-15 126.0 8.8 61 255-315 283-344 (376)
79 PHA02624 large T antigen; Prov 99.2 1.8E-11 3.8E-16 133.6 5.2 61 43-106 10-72 (647)
80 PRK09430 djlA Dna-J like membr 99.2 2.2E-11 4.7E-16 122.8 4.9 58 42-99 198-263 (267)
81 PRK14293 chaperone protein Dna 99.2 5.3E-11 1.2E-15 125.6 8.1 68 254-321 282-351 (374)
82 PRK14297 chaperone protein Dna 99.2 6.8E-11 1.5E-15 125.0 8.7 60 255-314 288-348 (380)
83 PRK14277 chaperone protein Dna 99.1 9.2E-11 2E-15 124.3 8.6 61 255-315 295-356 (386)
84 PRK14296 chaperone protein Dna 99.1 1.1E-10 2.4E-15 123.0 9.0 62 255-316 290-353 (372)
85 PRK14289 chaperone protein Dna 99.1 9.2E-11 2E-15 124.3 8.3 59 255-313 294-353 (386)
86 PRK14295 chaperone protein Dna 99.1 1.3E-10 2.9E-15 123.1 8.9 114 191-317 183-365 (389)
87 PRK14283 chaperone protein Dna 99.1 1.3E-10 2.8E-15 122.9 8.5 62 255-316 286-348 (378)
88 PRK14292 chaperone protein Dna 99.1 1.4E-10 3.1E-15 122.3 8.2 64 255-318 278-342 (371)
89 PTZ00037 DnaJ_C chaperone prot 99.1 1.8E-10 4E-15 122.9 7.7 58 254-311 289-353 (421)
90 PRK14291 chaperone protein Dna 99.1 7.6E-10 1.6E-14 117.2 11.0 54 255-308 291-346 (382)
91 COG5407 SEC63 Preprotein trans 99.0 1.5E-10 3.3E-15 120.2 4.3 72 43-114 97-174 (610)
92 TIGR00714 hscB Fe-S protein as 98.8 5.1E-09 1.1E-13 97.6 6.1 52 56-107 3-60 (157)
93 PRK14299 chaperone protein Dna 98.8 1.8E-08 3.9E-13 103.0 9.0 71 310-388 125-196 (291)
94 PRK01773 hscB co-chaperone Hsc 98.8 1.2E-08 2.6E-13 96.5 6.5 63 44-106 2-72 (173)
95 PLN03165 chaperone protein dna 98.7 2.7E-08 5.8E-13 87.0 6.2 61 190-262 40-100 (111)
96 PF01556 CTDII: DnaJ C termina 98.6 2.5E-08 5.4E-13 82.6 3.7 48 264-311 27-75 (81)
97 KOG1150 Predicted molecular ch 98.6 4E-08 8.6E-13 92.9 4.3 63 43-105 52-116 (250)
98 PRK10266 curved DNA-binding pr 98.5 2.2E-07 4.9E-12 95.6 9.1 74 312-387 115-202 (306)
99 COG5269 ZUO1 Ribosome-associat 98.5 1.1E-07 2.4E-12 93.6 4.1 66 44-109 43-114 (379)
100 KOG0568 Molecular chaperone (D 98.3 4.6E-07 9.9E-12 87.4 4.4 55 44-98 47-102 (342)
101 KOG0712 Molecular chaperone (D 98.3 1.1E-06 2.4E-11 90.4 7.0 55 253-308 266-324 (337)
102 KOG1789 Endocytosis protein RM 98.2 1.4E-06 3.1E-11 98.3 5.2 56 40-97 1277-1336(2235)
103 TIGR02642 phage_xxxx uncharact 98.1 3.2E-06 7E-11 80.5 4.0 49 234-283 99-149 (186)
104 COG1107 Archaea-specific RecJ- 97.7 1.8E-05 3.9E-10 85.5 3.5 70 192-262 3-82 (715)
105 KOG0723 Molecular chaperone (D 97.6 8.5E-05 1.8E-09 63.9 5.3 55 43-100 55-109 (112)
106 TIGR03835 termin_org_DnaJ term 97.3 0.00058 1.3E-08 76.7 8.6 71 44-114 2-72 (871)
107 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.3 0.00014 3E-09 58.0 2.0 43 191-244 15-66 (66)
108 COG1107 Archaea-specific RecJ- 96.9 0.00084 1.8E-08 73.0 4.6 47 191-248 18-82 (715)
109 KOG3192 Mitochondrial J-type c 96.4 0.0027 5.8E-08 58.4 3.6 70 41-110 5-84 (168)
110 PLN03165 chaperone protein dna 96.3 0.0029 6.3E-08 55.6 3.1 41 193-248 54-100 (111)
111 KOG2813 Predicted molecular ch 95.6 0.012 2.5E-07 60.0 4.0 31 236-269 247-277 (406)
112 TIGR02642 phage_xxxx uncharact 95.6 0.0093 2E-07 57.1 3.1 30 191-221 99-128 (186)
113 COG1076 DjlA DnaJ-domain-conta 95.4 0.008 1.7E-07 57.0 2.1 53 44-96 113-173 (174)
114 COG1076 DjlA DnaJ-domain-conta 94.3 0.027 5.8E-07 53.4 2.4 63 45-107 2-72 (174)
115 KOG2813 Predicted molecular ch 93.9 0.032 7E-07 56.9 2.1 59 191-261 198-258 (406)
116 KOG0431 Auxilin-like protein a 93.9 0.052 1.1E-06 59.1 3.7 68 10-95 372-447 (453)
117 PF03656 Pam16: Pam16; InterP 90.4 0.45 9.8E-06 42.9 4.8 55 44-101 58-112 (127)
118 PF11833 DUF3353: Protein of u 85.0 1.4 3.1E-05 42.6 4.9 38 53-97 1-38 (194)
119 KOG0715 Molecular chaperone (D 81.7 1.6 3.5E-05 44.8 4.1 59 177-248 168-231 (288)
120 PRK14714 DNA polymerase II lar 78.2 1.2 2.7E-05 53.3 2.0 60 180-258 657-719 (1337)
121 KOG2824 Glutaredoxin-related p 76.5 2.6 5.6E-05 42.7 3.5 50 192-254 230-279 (281)
122 KOG2824 Glutaredoxin-related p 76.0 2.8 6E-05 42.5 3.5 38 209-261 230-275 (281)
123 KOG0724 Zuotin and related mol 75.0 2.8 6.1E-05 43.6 3.6 52 56-107 4-60 (335)
124 TIGR00340 zpr1_rel ZPR1-relate 73.7 17 0.00037 34.2 8.1 26 332-361 72-98 (163)
125 smart00709 Zpr1 Duplicated dom 71.9 13 0.00028 35.0 6.8 26 332-361 75-100 (160)
126 TIGR00630 uvra excinuclease AB 70.9 2.9 6.3E-05 49.6 2.7 27 236-262 738-773 (924)
127 PF13446 RPT: A repeated domai 70.0 7.1 0.00015 30.3 3.9 44 45-98 6-49 (62)
128 cd03031 GRX_GRX_like Glutaredo 69.7 4.6 0.0001 37.4 3.2 45 191-244 99-143 (147)
129 PRK04023 DNA polymerase II lar 69.5 2 4.4E-05 50.4 1.0 65 174-259 609-674 (1121)
130 cd03031 GRX_GRX_like Glutaredo 66.0 6.4 0.00014 36.4 3.4 38 208-260 99-145 (147)
131 TIGR00310 ZPR1_znf ZPR1 zinc f 63.0 33 0.00072 33.2 7.8 75 210-284 2-100 (192)
132 smart00709 Zpr1 Duplicated dom 62.7 35 0.00076 32.0 7.7 36 210-245 2-40 (160)
133 PRK00349 uvrA excinuclease ABC 60.6 5.8 0.00013 47.3 2.6 28 236-263 740-776 (943)
134 TIGR00310 ZPR1_znf ZPR1 zinc f 58.9 44 0.00095 32.3 7.8 26 332-361 74-100 (192)
135 PF03833 PolC_DP2: DNA polymer 55.8 3.8 8.3E-05 47.4 0.0 64 175-259 638-703 (900)
136 COG5552 Uncharacterized conser 55.7 36 0.00079 27.8 5.5 46 43-88 2-47 (88)
137 TIGR00630 uvra excinuclease AB 54.6 6 0.00013 47.1 1.3 12 251-262 739-750 (924)
138 PRK00349 uvrA excinuclease ABC 54.0 9.6 0.00021 45.5 2.9 12 251-262 741-752 (943)
139 PRK00635 excinuclease ABC subu 52.5 8.9 0.00019 48.6 2.4 24 374-400 1721-1745(1809)
140 PRK14559 putative protein seri 51.6 8.6 0.00019 43.9 1.9 49 192-257 2-50 (645)
141 PF10041 DUF2277: Uncharacteri 51.3 56 0.0012 26.9 6.0 54 44-97 3-60 (78)
142 PF09538 FYDLN_acid: Protein o 51.1 8.6 0.00019 33.8 1.4 25 191-215 9-33 (108)
143 COG0178 UvrA Excinuclease ATPa 50.6 13 0.00028 43.3 3.1 33 235-269 731-772 (935)
144 PF04246 RseC_MucC: Positive r 50.1 32 0.00069 30.9 5.1 23 263-285 41-63 (135)
145 COG1198 PriA Primosomal protei 49.9 11 0.00024 43.6 2.4 52 189-257 433-484 (730)
146 PRK03564 formate dehydrogenase 47.0 18 0.0004 37.5 3.4 20 236-255 214-233 (309)
147 PF03589 Antiterm: Antitermina 46.6 6.1 0.00013 33.8 -0.2 37 210-246 7-44 (95)
148 PRK05978 hypothetical protein; 45.5 10 0.00022 35.2 1.1 25 210-241 35-59 (148)
149 TIGR03655 anti_R_Lar restricti 45.0 30 0.00066 26.0 3.5 13 210-222 3-15 (53)
150 PRK05580 primosome assembly pr 42.8 20 0.00044 41.2 3.2 61 181-258 366-431 (679)
151 PF11181 YflT: Heat induced st 41.0 8.8 0.00019 33.0 -0.1 27 438-464 54-82 (103)
152 TIGR02300 FYDLN_acid conserved 40.4 17 0.00036 32.8 1.6 27 191-217 9-35 (129)
153 PF07709 SRR: Seven Residue Re 39.6 17 0.00037 20.0 1.0 13 85-97 2-14 (14)
154 cd02639 R3H_RRM R3H domain of 39.1 39 0.00084 26.5 3.3 28 379-406 17-44 (60)
155 PRK14890 putative Zn-ribbon RN 39.0 25 0.00055 27.5 2.2 20 237-258 39-58 (59)
156 PF07092 DUF1356: Protein of u 37.6 19 0.0004 36.0 1.6 15 209-223 39-53 (238)
157 PRK14873 primosome assembly pr 37.5 19 0.00042 41.3 1.9 50 190-257 382-431 (665)
158 PRK12336 translation initiatio 36.4 1E+02 0.0022 30.0 6.5 12 87-98 5-16 (201)
159 PRK00564 hypA hydrogenase nick 34.3 54 0.0012 29.0 3.9 30 189-218 69-98 (117)
160 TIGR01562 FdhE formate dehydro 34.0 39 0.00085 35.1 3.3 20 237-256 213-232 (305)
161 PF07092 DUF1356: Protein of u 33.8 16 0.00035 36.4 0.5 17 190-206 37-53 (238)
162 PRK12380 hydrogenase nickel in 31.1 52 0.0011 29.0 3.2 13 189-201 68-80 (113)
163 TIGR00595 priA primosomal prot 31.0 30 0.00065 38.4 2.1 52 190-258 212-263 (505)
164 PF09855 DUF2082: Nucleic-acid 30.7 59 0.0013 25.8 3.1 7 235-241 37-43 (64)
165 PF08792 A2L_zn_ribbon: A2L zi 30.6 32 0.0007 23.6 1.4 12 209-220 4-15 (33)
166 PRK03564 formate dehydrogenase 30.1 73 0.0016 33.2 4.6 29 191-219 187-223 (309)
167 PRK00635 excinuclease ABC subu 30.0 22 0.00047 45.3 0.8 28 236-263 1609-1645(1809)
168 COG0178 UvrA Excinuclease ATPa 29.8 45 0.00097 39.1 3.2 30 250-279 732-763 (935)
169 PF14687 DUF4460: Domain of un 29.2 1E+02 0.0022 27.2 4.7 44 54-97 4-52 (112)
170 PF08774 VRR_NUC: VRR-NUC doma 29.2 72 0.0016 26.9 3.7 42 362-403 46-90 (100)
171 KOG3415 Putative Rab5-interact 29.0 36 0.00079 30.1 1.8 21 475-497 105-125 (129)
172 KOG2724 Nuclear pore complex c 26.6 53 0.0012 35.4 2.9 82 298-380 371-454 (487)
173 PF12434 Malate_DH: Malate deh 26.5 67 0.0015 21.2 2.2 17 58-74 10-26 (28)
174 PF12991 DUF3875: Domain of un 26.5 72 0.0016 24.5 2.8 24 372-395 26-51 (54)
175 PF07191 zinc-ribbons_6: zinc- 26.5 64 0.0014 26.2 2.7 50 193-256 3-58 (70)
176 cd06007 R3H_DEXH_helicase R3H 26.5 79 0.0017 24.6 3.1 27 379-405 16-42 (59)
177 TIGR00757 RNaseEG ribonuclease 26.3 38 0.00082 36.7 1.8 14 235-248 391-404 (414)
178 PF03367 zf-ZPR1: ZPR1 zinc-fi 26.2 65 0.0014 30.2 3.1 33 209-241 2-37 (161)
179 PRK03681 hypA hydrogenase nick 25.8 76 0.0016 28.0 3.3 11 189-199 68-78 (114)
180 smart00276 GLECT Galectin. Gal 24.8 1E+02 0.0022 27.3 4.1 42 345-386 3-49 (128)
181 PF07295 DUF1451: Protein of u 24.3 55 0.0012 30.3 2.2 10 235-244 131-140 (146)
182 PF09862 DUF2089: Protein of u 24.1 55 0.0012 29.0 2.1 19 237-255 1-19 (113)
183 TIGR01562 FdhE formate dehydro 24.0 1.1E+02 0.0024 31.8 4.6 13 207-219 209-221 (305)
184 PF03367 zf-ZPR1: ZPR1 zinc-fi 23.8 1E+02 0.0022 28.9 3.9 13 235-247 2-14 (161)
185 cd02641 R3H_Smubp-2_like R3H d 23.7 88 0.0019 24.3 2.9 26 380-405 18-43 (60)
186 PRK14051 negative regulator Gr 23.5 2.3E+02 0.0049 25.0 5.6 71 296-366 48-119 (123)
187 cd02640 R3H_NRF R3H domain of 23.4 95 0.0021 24.3 3.1 27 379-405 17-43 (60)
188 PF13677 MotB_plug: Membrane M 23.0 62 0.0014 25.0 2.0 21 479-499 24-44 (58)
189 PF01155 HypA: Hydrogenase exp 22.8 74 0.0016 27.9 2.7 29 189-218 68-96 (113)
190 PF05017 TMP: TMP repeat; Int 22.6 38 0.00082 17.5 0.5 10 443-452 1-10 (11)
191 COG1198 PriA Primosomal protei 22.2 47 0.001 38.6 1.6 39 192-243 445-484 (730)
192 TIGR00100 hypA hydrogenase nic 22.2 1E+02 0.0022 27.2 3.4 10 189-198 68-77 (115)
193 PF07739 TipAS: TipAS antibiot 22.1 1.4E+02 0.003 25.5 4.3 52 51-110 51-104 (118)
194 PF14353 CpXC: CpXC protein 21.4 69 0.0015 28.4 2.2 13 209-221 2-14 (128)
195 COG1241 MCM2 Predicted ATPase 21.2 1.3E+03 0.028 26.9 12.7 15 387-401 258-272 (682)
196 PRK12336 translation initiatio 21.2 3.5E+02 0.0076 26.2 7.2 12 189-200 96-107 (201)
197 PTZ00368 universal minicircle 21.1 82 0.0018 28.7 2.7 11 237-247 80-90 (148)
198 PF01096 TFIIS_C: Transcriptio 20.8 1.2E+02 0.0026 21.4 2.9 31 210-240 2-34 (39)
199 COG3071 HemY Uncharacterized e 20.6 49 0.0011 35.4 1.2 33 478-510 47-83 (400)
200 KOG0714 Molecular chaperone (D 20.5 14 0.00031 36.4 -2.7 58 42-111 96-153 (306)
201 PF01104 Bunya_NS-S: Bunyaviru 20.3 31 0.00067 29.4 -0.2 17 495-511 37-53 (91)
202 smart00440 ZnF_C2C2 C2C2 Zinc 20.0 1.4E+02 0.003 21.3 3.1 16 210-225 2-17 (40)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-97 Score=761.21 Aligned_cols=348 Identities=43% Similarity=0.732 Sum_probs=319.8
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCC
Q 010330 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL 120 (513)
Q Consensus 42 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~-~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~ 120 (513)
+.+|||+||||+++||++|||+|||+||+|||||+|+ +++|+++|++|++||||||||+||++||+||++++++++.++
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg 81 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGG 81 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCC
Confidence 5689999999999999999999999999999999999 789999999999999999999999999999999997333222
Q ss_pred -CCCCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCCC
Q 010330 121 -SNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGG 199 (513)
Q Consensus 121 -~~~~~g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~G 199 (513)
++++++.++.|||++|||+. +++ ...++.+.+|.|+++.|+|||+|||+|+++++.+++...|++|+|
T Consensus 82 ~g~~~fgg~~~DIF~~~FgGg--~~~---------~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~G 150 (371)
T COG0484 82 FGFGGFGGDFGDIFEDFFGGG--GGG---------RRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHG 150 (371)
T ss_pred CCcCCCCCCHHHHHHHhhcCC--Ccc---------cCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCC
Confidence 12222226889999999632 111 112234679999999999999999999999999999999999999
Q ss_pred CCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCCCE
Q 010330 200 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGAT 279 (513)
Q Consensus 200 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~ 279 (513)
+|+++++.+.+|++|+|+|++...+++ |.|++.++|+.|+|+|++|.++|.+|+|.|++.+.++++|+||+|+.+|++
T Consensus 151 sGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ 228 (371)
T COG0484 151 SGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDR 228 (371)
T ss_pred CCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCE
Confidence 999999999999999999999988887 889999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCCEEEE
Q 010330 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKL 359 (513)
Q Consensus 280 Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~~~~l 359 (513)
|+++|+|+++.+++++|||||.|.|++|+.|.|+|+|||++++|++.+|+||++|+||||||.++|+||+|+|+|++++|
T Consensus 229 ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl 308 (371)
T COG0484 229 IRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRL 308 (371)
T ss_pred EEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 360 QQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 360 ~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
+|+|||..++ ..+|||||+++|++|++|+.+|++||++|++..
T Consensus 309 ~gkG~p~~~~-~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~ 351 (371)
T COG0484 309 RGKGMPKLRS-GGRGDLYVRVKVETPKNLSDEQKELLEEFAKSL 351 (371)
T ss_pred cCCCccccCC-CCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 9999998665 467999999999999999999999999999866
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-84 Score=680.72 Aligned_cols=347 Identities=31% Similarity=0.612 Sum_probs=307.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCcccc-CCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD-GLS 121 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~-~~~ 121 (513)
.+|||++|||+++||.+|||+|||+||++||||+|++++|+++|++|++||+||+||+||+.||+||++++.++.+ +++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~ 82 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence 5799999999999999999999999999999999998889999999999999999999999999999987753211 001
Q ss_pred CCC----------CCC-CcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeee
Q 010330 122 NTS----------QGV-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSC 190 (513)
Q Consensus 122 ~~~----------~g~-d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r 190 (513)
.++ .++ ++.|+|++|||+. + + ....+.++.|+.+.|.|||+|+|+|+++++.+.+
T Consensus 83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fggg----~--~--------~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~ 148 (372)
T PRK14296 83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGSN----K--S--------DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDL 148 (372)
T ss_pred CCccccccccccccccccchhhhhhhcCCC----c--c--------CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEee
Confidence 000 011 2235666666421 0 0 0122457899999999999999999999999999
Q ss_pred eeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEc
Q 010330 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVI 270 (513)
Q Consensus 191 ~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~I 270 (513)
.+.|++|+|+|........+|+.|+|+|.++..++.++.++++.++|+.|+|+|+++.+.|..|+|.|++.+.++++|.|
T Consensus 149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I 228 (372)
T PRK14296 149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNI 228 (372)
T ss_pred eeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEE
Confidence 99999999999998888999999999999998888777666677899999999999999999999999999999999999
Q ss_pred CCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccc-cccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCC
Q 010330 271 PPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRD-GLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPS 349 (513)
Q Consensus 271 P~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~-G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~ 349 (513)
|+|+++|++|+|+|+|++..+++.+|||||+|+|++|+.|+|+ |+|||++++|||.|||||+++.|+||||++.|+||+
T Consensus 229 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~ 308 (372)
T PRK14296 229 PKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPK 308 (372)
T ss_pred CCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECC
Confidence 9999999999999999987677889999999999999999995 899999999999999999999999999998999999
Q ss_pred CCCCCCEEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 350 GVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 350 g~qpG~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
++|||++++|+|+|||....++.+|||||+|+|.||+.||++|+++|++|++..
T Consensus 309 ~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~~ 362 (372)
T PRK14296 309 SINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQT 362 (372)
T ss_pred ccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999966555678999999999999999999999999999864
No 3
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-82 Score=665.71 Aligned_cols=346 Identities=37% Similarity=0.752 Sum_probs=312.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 122 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~~ 122 (513)
.+|||++|||+++||.+|||+|||+||++||||+|++++|+++|++|++||++|+||++|++||+||++++.+++++++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~- 81 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGG- 81 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCC-
Confidence 4799999999999999999999999999999999988889999999999999999999999999999988764321111
Q ss_pred CCCCC-CcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCCCCC
Q 010330 123 TSQGV-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTG 201 (513)
Q Consensus 123 ~~~g~-d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~GtG 201 (513)
+.++ ++.|+|++|||+. + + .. ....+.++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus 82 -~~~f~~~~d~f~~~fgg~-~--~----~~-----~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G 148 (371)
T PRK14287 82 -AGDFGGFSDIFDMFFGGG-G--G----RR-----NPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSG 148 (371)
T ss_pred -CccccchHHHHHhhhccc-c--C----CC-----CCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcc
Confidence 1111 3458899998641 0 0 00 011235789999999999999999999999999999999999999
Q ss_pred cccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCCCEEE
Q 010330 202 AKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 281 (513)
Q Consensus 202 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Ir 281 (513)
........+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++...|..|+|.+++.+.++++|.||+|+.+|++|+
T Consensus 149 ~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~ 228 (371)
T PRK14287 149 AKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLR 228 (371)
T ss_pred cCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEE
Confidence 99888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCCEEEEcc
Q 010330 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQ 361 (513)
Q Consensus 282 l~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~~~~l~g 361 (513)
|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+|+||++.|+||+++++|++++|+|
T Consensus 229 ~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g 308 (371)
T PRK14287 229 VSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRG 308 (371)
T ss_pred EccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcC
Confidence 99999987667789999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 362 MGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 362 ~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
+|||..++ ..+|||||+|+|.+|+.|+.+|+++|++|+++.
T Consensus 309 ~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~ 349 (371)
T PRK14287 309 KGVPNVHG-RGQGDQHVQVRVVTPKNLTEKEKELMREFAGMS 349 (371)
T ss_pred CCccCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 99997654 368999999999999999999999999999653
No 4
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-82 Score=665.87 Aligned_cols=350 Identities=39% Similarity=0.705 Sum_probs=314.0
Q ss_pred cccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccC
Q 010330 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 119 (513)
Q Consensus 40 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~ 119 (513)
|...+|||+||||+++||.+|||+|||+||++||||+|++++++++|++|++||++|+||.+|+.||+||++++.+++++
T Consensus 1 ~~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~ 80 (377)
T PRK14298 1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSA 80 (377)
T ss_pred CCCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCc
Confidence 34458999999999999999999999999999999999888899999999999999999999999999999887643221
Q ss_pred C-CCCCCC-CCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCC
Q 010330 120 L-SNTSQG-VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSC 197 (513)
Q Consensus 120 ~-~~~~~g-~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C 197 (513)
+ +.++.+ .++.|+|++|||+. + + . ....+.++.|+.++|.|||||+|+|+++++.+.+.+.|+.|
T Consensus 81 ~~~~~~~~~~~~~d~f~~~Fgg~-~-----~-~------~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C 147 (377)
T PRK14298 81 EDIFRGADFGGFGDIFEMFFGGG-G-----R-R------GRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTC 147 (377)
T ss_pred ccccccCCcCcchhhhHhhhcCC-C-----c-c------CCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCC
Confidence 1 001111 23457888888541 0 0 0 01224578999999999999999999999999999999999
Q ss_pred CCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCC
Q 010330 198 GGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 277 (513)
Q Consensus 198 ~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G 277 (513)
+|+|...+....+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++.+.|..|+|.|++.+.++++|.||||+++|
T Consensus 148 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G 227 (377)
T PRK14298 148 SGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSG 227 (377)
T ss_pred CCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCC
Confidence 99999998888999999999999998888889998889999999999999999999999999999999999999999999
Q ss_pred CEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCCEE
Q 010330 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV 357 (513)
Q Consensus 278 ~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~~~ 357 (513)
++|+|+|+|+++..++.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|+++.|+||||++.|+||+++++|+++
T Consensus 228 ~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~l 307 (377)
T PRK14298 228 LRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVF 307 (377)
T ss_pred CEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEE
Confidence 99999999999777788999999999999999999999999999999999999999999999999899999999999999
Q ss_pred EEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 358 KLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 358 ~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
+|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus 308 ri~g~G~p~~~~-~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~~ 352 (377)
T PRK14298 308 RLKDKGMPRLHG-HGKGDQLVKVIVKTPTKLTQEQKELLREFDELS 352 (377)
T ss_pred EECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999997654 368999999999999999999999999999754
No 5
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.2e-82 Score=664.66 Aligned_cols=347 Identities=37% Similarity=0.728 Sum_probs=312.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccC--C
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG--L 120 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~--~ 120 (513)
.+|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||++|+||.+|++||+||++++.+++++ +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence 47999999999999999999999999999999999988899999999999999999999999999999887643211 0
Q ss_pred CCCC----CC-CCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeecc
Q 010330 121 SNTS----QG-VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 195 (513)
Q Consensus 121 ~~~~----~g-~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~ 195 (513)
+.++ .+ .++.|+|++|||+. + + .. ....+.++.|+.+.|.|||||+|+|+++++.+.+.+.|+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~----~--~-~~-----~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~ 150 (380)
T PRK14276 83 GFGGFDGSGGFGGFEDIFSSFFGGG----G--A-RR-----NPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCH 150 (380)
T ss_pred CCCCccccccccchhhHHHHHhCcc----c--c-cc-----CcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCC
Confidence 1010 01 24457888888641 0 0 00 012235789999999999999999999999999999999
Q ss_pred CCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCc
Q 010330 196 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 275 (513)
Q Consensus 196 ~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~ 275 (513)
.|+|+|........+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+.
T Consensus 151 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 230 (380)
T PRK14276 151 TCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVE 230 (380)
T ss_pred CCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCcc
Confidence 99999999888889999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCC
Q 010330 276 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGD 355 (513)
Q Consensus 276 ~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~ 355 (513)
+|++|+|+|+|++...++.+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|+++.|+|+||++.|+||+++++|+
T Consensus 231 ~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~ 310 (380)
T PRK14276 231 TGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGK 310 (380)
T ss_pred CCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCC
Confidence 99999999999987666788999999999999999999999999999999999999999999999998999999999999
Q ss_pred EEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 010330 356 TVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 402 (513)
Q Consensus 356 ~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~ 402 (513)
+++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus 311 ~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~ 356 (380)
T PRK14276 311 KFRLRGKGAPKLRG-GGNGDQHVTVNIVTPTKLNDAQKEALKAFAKA 356 (380)
T ss_pred EEEECCCCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999999997653 36899999999999999999999999999864
No 6
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.8e-82 Score=660.16 Aligned_cols=348 Identities=41% Similarity=0.756 Sum_probs=312.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 122 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~~ 122 (513)
.+|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||+||+||.+|++||+||++++.++.++++.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 82 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence 47999999999999999999999999999999999988899999999999999999999999999999887643221110
Q ss_pred C--C--CCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCC
Q 010330 123 T--S--QGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCG 198 (513)
Q Consensus 123 ~--~--~g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~ 198 (513)
+ . .++++.|+|++|||+. +. + . ....+.++.|+.+.|.|||||+|+|+++++.+.+.+.|+.|+
T Consensus 83 ~~~~~~~~~~~~d~f~~~fgg~--~~---~--~-----~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~ 150 (376)
T PRK14280 83 GGGDFGGGFGFEDIFSSFFGGG--GR---R--R-----DPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCH 150 (376)
T ss_pred CCCCccccccchhhHHHHhCCc--cc---c--C-----cccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCC
Confidence 1 0 1224568899988631 00 0 0 011235789999999999999999999999999999999999
Q ss_pred CCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCCC
Q 010330 199 GTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGA 278 (513)
Q Consensus 199 GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~ 278 (513)
|+|........+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+.+|+
T Consensus 151 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~ 230 (376)
T PRK14280 151 GSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQ 230 (376)
T ss_pred CcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCc
Confidence 99999888889999999999999888899999999899999999999999999999999999999999999999999999
Q ss_pred EEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCCEEE
Q 010330 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVK 358 (513)
Q Consensus 279 ~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~~~~ 358 (513)
+|+|+|+|++...++.+|||||+|+|++|+.|+|+|+||+++++|||.|||+|+++.|+||||++.|+||+++++|++++
T Consensus 231 ~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~ 310 (376)
T PRK14280 231 QIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFR 310 (376)
T ss_pred EEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEE
Confidence 99999999987767789999999999999999999999999999999999999999999999998999999999999999
Q ss_pred EccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 359 LQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 359 l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
|+|+|||.... ..+|||||+|+|.+|+.||++|+++|++|+++.
T Consensus 311 i~g~G~p~~~~-~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~~ 354 (376)
T PRK14280 311 LKGKGVPNVRG-YGQGDQYVVVRVVTPTKLTDRQKELLREFAELS 354 (376)
T ss_pred EcCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 99999997643 368999999999999999999999999999653
No 7
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-81 Score=659.70 Aligned_cols=349 Identities=35% Similarity=0.611 Sum_probs=309.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 122 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~~ 122 (513)
.+|||+||||+++||.+|||+|||+||++||||+|++++|+++|++|++||+||+||++|+.||+||++...++..+++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~ 81 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF 81 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence 37999999999999999999999999999999999988899999999999999999999999999998643221110111
Q ss_pred CCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCCCCCc
Q 010330 123 TSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGA 202 (513)
Q Consensus 123 ~~~g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~GtG~ 202 (513)
++...++.|+|++|||+. ++ + . ..+..+.++.|+.+.|.|||||+|+|+++++.+.+.+.|+.|+|+|.
T Consensus 82 ~~~f~~~~d~f~~ffgg~----g~-~-~-----~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~ 150 (378)
T PRK14278 82 GGGFGGLGDVFEAFFGGG----AA-S-R-----GPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGT 150 (378)
T ss_pred CcCcCchhHHHHHHhCCC----CC-C-C-----CCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccC
Confidence 100013457899998642 10 0 0 00112457899999999999999999999999999999999999999
Q ss_pred ccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCCCEEEE
Q 010330 203 KSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI 282 (513)
Q Consensus 203 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl 282 (513)
.......+|+.|+|+|.++..+++.+|++++.++|+.|+|+|+++.+.|..|+|.|++.+.++++|.||||+++|++|+|
T Consensus 151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~ 230 (378)
T PRK14278 151 AGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRL 230 (378)
T ss_pred CCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEE
Confidence 98888899999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEecc-CCcEEEEeCCCCCCCCEEEEcc
Q 010330 283 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETV-EGMKDLRIPSGVQPGDTVKLQQ 361 (513)
Q Consensus 283 ~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tl-dG~~~l~Ip~g~qpG~~~~l~g 361 (513)
+|+|++...++.+|||||+|++++|+.|+|+|+||+++++|+|.+||+|+++.|+|| +|.+.|+||+++++|++++|+|
T Consensus 231 ~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g 310 (378)
T PRK14278 231 AAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRG 310 (378)
T ss_pred ccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECC
Confidence 999999877778899999999999999999999999999999999999999999999 5567999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 362 MGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 362 ~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
+|||..+. ..+|||||+|+|.||+.||++|+++|++|+.+.
T Consensus 311 ~G~p~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~~ 351 (378)
T PRK14278 311 RGMPHLRS-GGRGDLHAHVEVVVPTRLDHEDIELLRELKALR 351 (378)
T ss_pred CCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Confidence 99997653 468999999999999999999999999999753
No 8
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=2.9e-82 Score=669.63 Aligned_cols=358 Identities=30% Similarity=0.549 Sum_probs=310.8
Q ss_pred cccccccCCCCCcccccccccccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccc
Q 010330 20 FSFKWNYCSGNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDD 99 (513)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~ 99 (513)
++|+|..+.+....++.....+..+|||++|||+++||.+|||+|||+||++||||+|++ .++|++|++||+||+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~ 80 (421)
T PTZ00037 4 SGFPFDGMPGGGFDGGRRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDP 80 (421)
T ss_pred ccCCcccccCCCCCCCcccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccH
Confidence 356788755444332333333346899999999999999999999999999999999853 58999999999999999
Q ss_pred hhhhhcccccccCCCccccCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeE
Q 010330 100 EKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESI 179 (513)
Q Consensus 100 ~kR~~YD~~G~~g~~~~~~~~~~~~~g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~ 179 (513)
+||++||+||++++.++. .+.++.|+|+.||++. + . +..+.++.|+.+.|.|||+|+|
T Consensus 81 ~kR~~YD~~G~~~~~~~~-------~~~d~~d~f~~~Fggg----~--~---------~~~~~rg~di~~~l~vtLee~~ 138 (421)
T PTZ00037 81 EKRKIYDEYGEEGLEGGE-------QPADASDLFDLIFGGG----R--K---------PGGKKRGEDIVSHLKVTLEQIY 138 (421)
T ss_pred HHHHHHhhhcchhcccCC-------CCcchhhhHHHhhccc----c--c---------cccccCCCCEEEEeeeeHHHHh
Confidence 999999999998775321 1235678999998531 0 0 0123578999999999999999
Q ss_pred eeeEEEEEeeeeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEe--eeeeecCCc
Q 010330 180 FGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--DHCRRCGGN 257 (513)
Q Consensus 180 ~G~~k~v~~~r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--~~C~~C~G~ 257 (513)
+|+++++.+.+.+.|+.|+|+|.... ...+|+.|+|+|.++...+.++.++++..+|+.|+|+|+++. +.|..|+|.
T Consensus 139 ~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~ 217 (421)
T PTZ00037 139 NGAMRKLAINKDVICANCEGHGGPKD-AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGK 217 (421)
T ss_pred CCCceEEEeeccccccccCCCCCCCC-CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCc
Confidence 99999999999999999999998654 578999999999988777665533455679999999999986 679999999
Q ss_pred eEEeeeeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEe
Q 010330 258 GEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVE 337 (513)
Q Consensus 258 G~v~~~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~ 337 (513)
|++.+.++++|.||+|+.+|++|+|+|+|++.. ++.||||||+|++++|+.|+|+|+|||++++|+|+|||||+++.|+
T Consensus 218 g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~ 296 (421)
T PTZ00037 218 GVKKTRKILEVNIDKGVPNQHKITFHGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYIT 296 (421)
T ss_pred ceeeeeeEEEEeeCCCCCCCcEEEEecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEee
Confidence 999999999999999999999999999999864 5789999999999999999999999999999999999999999999
Q ss_pred ccCCc-EEEEeCCC--CCCCCEEEEccCCCCCCCCCCCCCcEEEEEEEEcC--CCCChhHHHHHHHHHhhcC
Q 010330 338 TVEGM-KDLRIPSG--VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIP--KDISDPERALVEEIAFLKS 404 (513)
Q Consensus 338 tldG~-~~l~Ip~g--~qpG~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P--~~ls~~qr~lLe~l~~~~~ 404 (513)
||||+ +.|+||+| ++||++++|+|+|||..++++.+|||||+|+|.|| +.||++|+++|++|+...+
T Consensus 297 tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~~~ 368 (421)
T PTZ00037 297 HLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNP 368 (421)
T ss_pred CCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccCCC
Confidence 99997 78999998 99999999999999987765679999999999999 9999999999999997533
No 9
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-81 Score=661.53 Aligned_cols=354 Identities=39% Similarity=0.740 Sum_probs=312.5
Q ss_pred cccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHhhccchhhhhcccccccCCCccc-
Q 010330 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEY- 117 (513)
Q Consensus 40 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~-~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~- 117 (513)
|+..+|||++|||+++||.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|+.||+||++++..+.
T Consensus 1 ~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~ 80 (386)
T PRK14277 1 MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGF 80 (386)
T ss_pred CCCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccc
Confidence 3445899999999999999999999999999999999984 67899999999999999999999999999998875321
Q ss_pred cCCC---CC----CCC---CCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEE
Q 010330 118 DGLS---NT----SQG---VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIE 187 (513)
Q Consensus 118 ~~~~---~~----~~g---~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~ 187 (513)
++++ ++ +.. .++.|+|++||++. |++.+ . .....+.++.|+++.|.|||||+|+|+++++.
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~---fgg~~---~---~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~ 151 (386)
T PRK14277 81 GQGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDF---FGTGR---R---RAETGPQKGADIRYDLELTFEEAAFGTEKEIE 151 (386)
T ss_pred ccCCcCCCCccccCccccccchhHHHHHhhccc---ccCCC---c---CCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEE
Confidence 1100 01 001 12336788888642 33211 0 01112457899999999999999999999999
Q ss_pred eeeeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEE
Q 010330 188 VSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMK 267 (513)
Q Consensus 188 ~~r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~ 267 (513)
+.+.+.|+.|+|+|........+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++.+.|..|+|.|++.+.++++
T Consensus 152 ~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~ 231 (386)
T PRK14277 152 VERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIK 231 (386)
T ss_pred EEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEE
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEe
Q 010330 268 VVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRI 347 (513)
Q Consensus 268 V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~I 347 (513)
|.||+|+++|++|+|+|+|++...++.+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|+++.|+||||++.|+|
T Consensus 232 V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i 311 (386)
T PRK14277 232 VNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTI 311 (386)
T ss_pred EecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEE
Confidence 99999999999999999999876667889999999999999999999999999999999999999999999999989999
Q ss_pred CCCCCCCCEEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 348 PSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 348 p~g~qpG~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
|+++++|++++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+++.
T Consensus 312 p~g~~~g~~~ri~g~G~p~~~~-~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~~ 366 (386)
T PRK14277 312 PEGTQTGTKFRLRGKGIPHLRG-RGRGDQIVKVYIEVPKKLTEKQKELLREFEKLS 366 (386)
T ss_pred CCCCCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999997654 368999999999999999999999999999654
No 10
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-81 Score=657.67 Aligned_cols=342 Identities=35% Similarity=0.635 Sum_probs=297.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~-~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~ 121 (513)
.+|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++|||||+||+||++||+||++++.++.+ ++
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~-~~ 80 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGA-SQ 80 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCC-Cc
Confidence 479999999999999999999999999999999998 4679999999999999999999999999999987753211 00
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCCCCC
Q 010330 122 NTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTG 201 (513)
Q Consensus 122 ~~~~g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~GtG 201 (513)
.+ ..++|+.|++||+.. ||+++ .++ .+.++.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus 81 ~~--~~~~f~~~~~~F~~~---fg~g~-~~~----~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G 150 (369)
T PRK14288 81 SD--FSDFFEDLGSFFEDA---FGFGA-RGS----KRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTG 150 (369)
T ss_pred cc--cccchhhHHHHHHhh---cCCCC-ccc----CcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcc
Confidence 01 113333333444321 22101 000 112245789999999999999999999999999999999999999
Q ss_pred cccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCCCEEE
Q 010330 202 AKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 281 (513)
Q Consensus 202 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Ir 281 (513)
.... ...+|+.|+|+|.++..+ |++++.++|+.|+|+|+++.+.|..|+|.|++.+.++++|.||||+++|++|+
T Consensus 151 ~~~~-~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~ 225 (369)
T PRK14288 151 AKDK-ALETCKQCNGQGQVFMRQ----GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMV 225 (369)
T ss_pred cCCC-CCcCCCCCCCCcEEEEEe----ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEE
Confidence 9875 678999999999876543 77788889999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCc-EEEEeCCCCCCCCEEEEc
Q 010330 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQ 360 (513)
Q Consensus 282 l~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~-~~l~Ip~g~qpG~~~~l~ 360 (513)
|+|+|++.. ++.+|||||+|+|++|+.|+|+|+|||++++|||.|||||+++.|+||||+ +.|+||++++||++++|+
T Consensus 226 l~g~G~~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~ 304 (369)
T PRK14288 226 LKNKGNEYE-KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFR 304 (369)
T ss_pred EccCccCCC-CCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEc
Confidence 999999854 578999999999999999999999999999999999999999999999997 799999999999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 010330 361 QMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 402 (513)
Q Consensus 361 g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~ 402 (513)
|+|||..+ +..+|||||+|+|.+|+.|+++|+++|++|+..
T Consensus 305 g~G~p~~~-~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~ 345 (369)
T PRK14288 305 NEGVKHPE-SSYRGSLIVELQVIYPKSLNKEQQELLEKLHAS 345 (369)
T ss_pred CCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999765 346899999999999999999999999999975
No 11
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-81 Score=657.55 Aligned_cols=348 Identities=37% Similarity=0.716 Sum_probs=306.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~-~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~ 121 (513)
++|||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||.+|++||+||+++++.+.++++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 479999999999999999999999999999999997 4678999999999999999999999999999988764321111
Q ss_pred CCC-CC-----CCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeecc
Q 010330 122 NTS-QG-----VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 195 (513)
Q Consensus 122 ~~~-~g-----~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~ 195 (513)
.++ .+ .++.|+|++|||+..++. .++ .....+.++.|++++|.|||||+|+|+++++.+.+.+.|+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~-----~~~---~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~ 154 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGG-----SGG---GRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCV 154 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCC-----Ccc---cccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCC
Confidence 110 11 234588999996421110 000 0112346789999999999999999999999999999999
Q ss_pred CCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCc
Q 010330 196 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 275 (513)
Q Consensus 196 ~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~ 275 (513)
+|+|+|........+|+.|+|+|.++..+ |++++.++|+.|+|+|+++.+.|..|+|.|++.+.++++|.||+|+.
T Consensus 155 ~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 230 (372)
T PRK14286 155 DCNGSGASKGSSPTTCPDCGGSGQIRRTQ----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVE 230 (372)
T ss_pred CCcCCCcCCCCCCccCCCCcCeEEEEEEe----ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCC
Confidence 99999999888889999999999886653 78888899999999999999999999999999999999999999999
Q ss_pred CCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCc-EEEEeCCCCCCC
Q 010330 276 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPG 354 (513)
Q Consensus 276 ~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~-~~l~Ip~g~qpG 354 (513)
+|++|+|+|+|++...+..+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|+++.|+||||+ +.|+||+++++|
T Consensus 231 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g 310 (372)
T PRK14286 231 TGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESG 310 (372)
T ss_pred CCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCC
Confidence 9999999999999776677899999999999999999999999999999999999999999999997 799999999999
Q ss_pred CEEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 355 DTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 355 ~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
++++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|++++
T Consensus 311 ~~~ri~G~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~ 358 (372)
T PRK14286 311 QVFRLKGHGMPYLGA-YGKGDQHVIVKIEIPKKITRRQRELIEEFARES 358 (372)
T ss_pred cEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999997654 368999999999999999999999999999865
No 12
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-80 Score=651.09 Aligned_cols=350 Identities=37% Similarity=0.714 Sum_probs=312.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCC-
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL- 120 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~-~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~- 120 (513)
.+|||++|||+++||.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|++||+||++++.++.+.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 4799999999999999999999999999999999984 57899999999999999999999999999998876321111
Q ss_pred -CCCCCC----CCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeecc
Q 010330 121 -SNTSQG----VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 195 (513)
Q Consensus 121 -~~~~~g----~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~ 195 (513)
+.++.. .++.|+|++|||+. |++.+ .....+.++.|++++|.|||||+|+|+++++.+.+.+.|+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~---~g~~~-------~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 152 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGG---FGSSS-------RRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCE 152 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccC---ccccc-------cccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCC
Confidence 111111 13458899999641 21100 0112245789999999999999999999999999999999
Q ss_pred CCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCc
Q 010330 196 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 275 (513)
Q Consensus 196 ~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~ 275 (513)
.|+|+|..++....+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+.
T Consensus 153 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~ 232 (380)
T PRK14297 153 TCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVD 232 (380)
T ss_pred CcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCC
Confidence 99999999888889999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCC
Q 010330 276 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGD 355 (513)
Q Consensus 276 ~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~ 355 (513)
+|++|+|+|+|++...+..+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|+++.|+|+||++.|+||+++++|+
T Consensus 233 ~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~ 312 (380)
T PRK14297 233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGT 312 (380)
T ss_pred CCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCC
Confidence 99999999999987667789999999999999999999999999999999999999999999999998999999999999
Q ss_pred EEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 356 TVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 356 ~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
+++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+...
T Consensus 313 ~~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~ 359 (380)
T PRK14297 313 VFRLKGKGVPRVNS-TGRGNQYVTVIVDIPKKLNSKQKEALTMFMEAS 359 (380)
T ss_pred EEEEcCCCcCCCCC-CCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999997643 468999999999999999999999999999764
No 13
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.4e-80 Score=650.08 Aligned_cols=347 Identities=37% Similarity=0.686 Sum_probs=301.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccC-CC
Q 010330 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-LS 121 (513)
Q Consensus 44 ~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~-~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~-~~ 121 (513)
.|||+||||+++||.+|||+|||+||++||||+|++ +.|+++|++|++||++|+|+.||++||+||++++..+.++ ++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 489999999999999999999999999999999984 6789999999999999999999999999999876432110 00
Q ss_pred CCCCC---------------C-CcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEE
Q 010330 122 NTSQG---------------V-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRG 185 (513)
Q Consensus 122 ~~~~g---------------~-d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~ 185 (513)
++..+ + ++.|+|++||++.++.|++ . .....+.++.|+.+.|.|||||+|+|++++
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~-----~---~~~~~~~~g~d~~~~l~vslee~~~G~~~~ 152 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM-----R---GGPAGARQGASKKVHITLSFEEAAKGVEKE 152 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccc-----c---ccCCCcCCCCCeEEEEEEEHHHHhCCeeEE
Confidence 01000 0 0125566666432111110 0 001124578999999999999999999999
Q ss_pred EEeeeeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeE
Q 010330 186 IEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRS 265 (513)
Q Consensus 186 v~~~r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~ 265 (513)
+.+.+.+.|++|+|+|+.......+|+.|+|+|.++..+ |++++..+|+.|+|+|+++.+.|..|+|.|++.+.++
T Consensus 153 i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~ 228 (391)
T PRK14284 153 LLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRS 228 (391)
T ss_pred EEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEE
Confidence 999999999999999999988889999999999887543 7788889999999999999999999999999999999
Q ss_pred EEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccC--CcE
Q 010330 266 MKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVE--GMK 343 (513)
Q Consensus 266 l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tld--G~~ 343 (513)
++|.||||+.+|++|+|+|+|+++..++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|++++|+||| +.+
T Consensus 229 l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i 308 (391)
T PRK14284 229 VHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTC 308 (391)
T ss_pred EEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEE
Confidence 999999999999999999999998878899999999999999999999999999999999999999999999999 567
Q ss_pred EEEeCCCCCCCCEEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 344 DLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 344 ~l~Ip~g~qpG~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
+|+||+++++|++++|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus 309 ~v~Ip~g~~~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~ 367 (391)
T PRK14284 309 RLTIPEGIQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQNLSEEQKELLRQFAATE 367 (391)
T ss_pred EEEECCccCCCeEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999999997653 368999999999999999999999999999653
No 14
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-79 Score=648.88 Aligned_cols=357 Identities=36% Similarity=0.677 Sum_probs=308.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHhhccchhhhhcccccccCCCcccc--C
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD--G 119 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~-~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~--~ 119 (513)
.+|||++|||+++||.+|||+|||+||++||||+|++ +.|+++|++|++||++|+|+.+|+.||+||++++.+... +
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 4799999999999999999999999999999999984 578899999999999999999999999999988763211 1
Q ss_pred C-CCCCCCCCcccc---cccccCCCCCCCCCC------CCCCCc-cccCCCCCCCCcceeEeeeccceeeEeeeEEEEEe
Q 010330 120 L-SNTSQGVDPFEL---YSAFFGGSDGLFGGV------GEAGGI-NFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEV 188 (513)
Q Consensus 120 ~-~~~~~g~d~~dl---F~~fFgg~~g~fg~~------g~~g~~-~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~ 188 (513)
+ +.+..+.++.|+ |++|||+.. ++++. +.+++. ....+..+.++.|+++.|.|||||+|+|+++++.+
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~ 160 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGA-RRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKI 160 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCc-ccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEE
Confidence 0 101112233344 457886421 11100 000110 00001123578999999999999999999999999
Q ss_pred eeeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEE
Q 010330 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKV 268 (513)
Q Consensus 189 ~r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V 268 (513)
.+.+.|+.|+|+|.... ...+|+.|+|+|.++..+++.+|++++..+|+.|+|+|+++.+.|..|+|.|++.+.++++|
T Consensus 161 ~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V 239 (397)
T PRK14281 161 KKQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKV 239 (397)
T ss_pred EeeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEE
Confidence 99999999999999876 67899999999999998899999999999999999999999999999999999999999999
Q ss_pred EcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeC
Q 010330 269 VIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIP 348 (513)
Q Consensus 269 ~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip 348 (513)
.||+|+++|++|+|+|+|++...++.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|+++.|+||||++.|+||
T Consensus 240 ~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip 319 (397)
T PRK14281 240 TVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIP 319 (397)
T ss_pred ecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeC
Confidence 99999999999999999999776778999999999999999999999999999999999999999999999999899999
Q ss_pred CCCCCCCEEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 010330 349 SGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 402 (513)
Q Consensus 349 ~g~qpG~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~ 402 (513)
+++++|++++|+|+|||..+. ..+|||||+|+|.||+.||++|+++|++|++.
T Consensus 320 ~g~~~G~~~ri~g~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 372 (397)
T PRK14281 320 AGTQPETMLRIPGKGIGHLRG-SGRGDQYVRVNVFVPKEVSHQDKELLKELKKS 372 (397)
T ss_pred CccCCCcEEEEcCCCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 999999999999999997653 36899999999999999999999999999964
No 15
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-79 Score=641.39 Aligned_cols=351 Identities=37% Similarity=0.685 Sum_probs=309.2
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccC
Q 010330 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 119 (513)
Q Consensus 42 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~--~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~ 119 (513)
+.+|||++|||+++||.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||++|++||+||++++...+.+
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~ 81 (369)
T PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQE 81 (369)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccccccccc
Confidence 35899999999999999999999999999999999974 5688999999999999999999999999998876532111
Q ss_pred -CCCCC-CC-----C-Cc--ccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEee
Q 010330 120 -LSNTS-QG-----V-DP--FELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVS 189 (513)
Q Consensus 120 -~~~~~-~g-----~-d~--~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~ 189 (513)
++.++ .. + ++ .|+|+.|||+. ++ + + ..+..+.+++|+.+.|.|||+|+|+|+++++.+.
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~----~~-~---~---~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~ 150 (369)
T PRK14282 82 TESGGGFFEDIFKDFENIFNRDIFDIFFGER----RT-Q---E---EQREYARRGEDIRYEIEVTLSDLINGAEIPVEYD 150 (369)
T ss_pred CCCCCcccccccccccccccchhhhHhhccc----CC-c---c---cccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEee
Confidence 01111 00 1 11 15666666431 00 0 0 0112345789999999999999999999999999
Q ss_pred eeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEE
Q 010330 190 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVV 269 (513)
Q Consensus 190 r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~ 269 (513)
+.+.|+.|+|+|+.......+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++.+.|..|+|.|++.+.++++|.
T Consensus 151 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~ 230 (369)
T PRK14282 151 RYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVK 230 (369)
T ss_pred ecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEE
Confidence 99999999999999888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCc-EEEEeC
Q 010330 270 IPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIP 348 (513)
Q Consensus 270 IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~-~~l~Ip 348 (513)
||+|+.+|++|+|+|+|+++..++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+|+||+ +.|+||
T Consensus 231 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip 310 (369)
T PRK14282 231 IPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIP 310 (369)
T ss_pred eCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeC
Confidence 9999999999999999998777788999999999999999999999999999999999999999999999997 799999
Q ss_pred CCCCCCCEEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhcC
Q 010330 349 SGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKS 404 (513)
Q Consensus 349 ~g~qpG~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~~ 404 (513)
+++++|++++|+|+|||..+. +.+|||||+|+|.+|+.|+.+++++|++|++++.
T Consensus 311 ~g~~~g~~iri~GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~~~ 365 (369)
T PRK14282 311 PGTQPETVFRLKGKGLPNMRY-GRRGDLIVNVHVEIPKRLSREERKLLKELAKKRG 365 (369)
T ss_pred CCcCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999997543 4689999999999999999999999999998654
No 16
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-79 Score=647.40 Aligned_cols=353 Identities=33% Similarity=0.586 Sum_probs=298.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccC--
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-- 119 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~-~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~-- 119 (513)
.+|||++|||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||+||++||+||+++..++..+
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~ 87 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRR 87 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccccc
Confidence 589999999999999999999999999999999998 46789999999999999999999999999997533211110
Q ss_pred ----CCCCC-------CCCCcccccccccCCCCCC----CCCCCCCC-CccccCCCCCCCCcceeEeeeccceeeEeeeE
Q 010330 120 ----LSNTS-------QGVDPFELYSAFFGGSDGL----FGGVGEAG-GINFNFGNKGNFGLDIRYDLHLSFEESIFGGQ 183 (513)
Q Consensus 120 ----~~~~~-------~g~d~~dlF~~fFgg~~g~----fg~~g~~g-~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~ 183 (513)
++.++ .++++.++|+.++++..+. |+++ ++ +........+.++.|+++.|.|||||+|+|++
T Consensus 88 ~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~--fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~ 165 (392)
T PRK14279 88 FDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGL--FNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVT 165 (392)
T ss_pred ccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhh--hcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeE
Confidence 00000 1123333332211110000 1100 00 00000112345789999999999999999999
Q ss_pred EEEEeeeeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeee
Q 010330 184 RGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSK 263 (513)
Q Consensus 184 k~v~~~r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~ 263 (513)
+++.+.+.+.|+.|+|+|........+|+.|+|+|.++..+ |++++..+|+.|+|+|+++.+.|..|.|.|++.+.
T Consensus 166 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~ 241 (392)
T PRK14279 166 MPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRT 241 (392)
T ss_pred EEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEe
Confidence 99999999999999999999888899999999999887653 67778899999999999999999999999999999
Q ss_pred eEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcE
Q 010330 264 RSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMK 343 (513)
Q Consensus 264 k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~ 343 (513)
++++|.||+|+++|++|+|+|+|++..+++.+|||||+|+|++|+.|+|+|+||+++++|+|.+|++|+++.|+|+||++
T Consensus 242 ~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i 321 (392)
T PRK14279 242 RTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPV 321 (392)
T ss_pred eeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceE
Confidence 99999999999999999999999998777788999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCEEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 344 DLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 344 ~l~Ip~g~qpG~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
.|+||+++++|++++|+|+|||.. ++.+|||||+|+|.||+.|+++|+++|++|+.+.
T Consensus 322 ~v~Ip~g~~~g~~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~~ 379 (392)
T PRK14279 322 GVKVPAGTADGRILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEAE 379 (392)
T ss_pred EEEECCCCCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999999963 3468999999999999999999999999999863
No 17
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-79 Score=639.18 Aligned_cols=346 Identities=30% Similarity=0.621 Sum_probs=305.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~-~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~ 121 (513)
.+|||++|||+++||.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|+.||+||++++.++.+.++
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 4799999999999999999999999999999999974 678899999999999999999999999999988754321101
Q ss_pred --CCCCC-----CCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeec
Q 010330 122 --NTSQG-----VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETC 194 (513)
Q Consensus 122 --~~~~g-----~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C 194 (513)
++..+ .++.|+|++|||+. .+. + ....+.++.|+.++|.|||||+|+|+++++.+.+.+.|
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~---~~~-~--------~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C 149 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGN---RGQ-D--------KNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLC 149 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCC---cCC-C--------CCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccC
Confidence 01011 13447788888531 000 0 01123578999999999999999999999999999999
Q ss_pred cCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCC
Q 010330 195 DSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGV 274 (513)
Q Consensus 195 ~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv 274 (513)
+.|+|+|.........|+.|+|+|+++. .+|++++..+|+.|+|+|+++.+.|..|+|.|++.+.++++|.||||+
T Consensus 150 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~ 225 (365)
T PRK14285 150 ESCLGKKSEKGTSPSICNMCNGSGRVMQ----GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGI 225 (365)
T ss_pred CCCCCcccCCCCCCccCCCccCceeEEe----cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCC
Confidence 9999999998888899999999998764 458888889999999999999999999999999999999999999999
Q ss_pred cCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCc-EEEEeCCCCCC
Q 010330 275 SNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQP 353 (513)
Q Consensus 275 ~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~-~~l~Ip~g~qp 353 (513)
++|++|+|+|+|++...++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|+||+++++
T Consensus 226 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~ 305 (365)
T PRK14285 226 DDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTEN 305 (365)
T ss_pred CCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCC
Confidence 99999999999999876778999999999999999999999999999999999999999999999996 78999999999
Q ss_pred CCEEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhcCC
Q 010330 354 GDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSP 405 (513)
Q Consensus 354 G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~~~ 405 (513)
|++++|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+++..+
T Consensus 306 g~~irl~GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~~ 356 (365)
T PRK14285 306 DEQIIIKNEGMPILHT-EKFGNLILIIKIKTPKNLNSNAIKLLENLSKELKD 356 (365)
T ss_pred CcEEEECCCCccCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999997654 35799999999999999999999999999988765
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.1e-79 Score=639.75 Aligned_cols=352 Identities=38% Similarity=0.627 Sum_probs=301.2
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHhhccchhhhhccc----ccccCCCcc
Q 010330 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDR----FGEAGITGE 116 (513)
Q Consensus 42 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~-~~a~~~f~~i~~AyevL~d~~kR~~YD~----~G~~g~~~~ 116 (513)
+.+|||+||||+++||.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|++||+ ||++++.++
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 45899999999999999999999999999999999974 5789999999999999999999999999 999887532
Q ss_pred ccCCCCCCCCCCcccccccccCCCC-C--------CCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEE
Q 010330 117 YDGLSNTSQGVDPFELYSAFFGGSD-G--------LFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIE 187 (513)
Q Consensus 117 ~~~~~~~~~g~d~~dlF~~fFgg~~-g--------~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~ 187 (513)
.+++++++..+++.++|+.++++.+ + .|++ .+++. .....+.++.|+.++|.|||||+|+|+++++.
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~--~fg~~--~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~ 162 (389)
T PRK14295 87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGG--LFNRG--GRRTQPRRGADVESEVTLSFTEAIDGATVPLR 162 (389)
T ss_pred CCCCCCCCCCcccccccccccccccccccccchhhhhcc--cccCC--CCCCCCCCCCCEEEEEEEEHHHHhCCceEEEE
Confidence 1111011112244455543321100 0 0110 00100 01123457899999999999999999999999
Q ss_pred eeeeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEE
Q 010330 188 VSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMK 267 (513)
Q Consensus 188 ~~r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~ 267 (513)
+.+.+.|++|+|+|........+|+.|+|+|.++..+ |+|++..+|+.|+|+|+++.+.|..|.|.|++.+.++++
T Consensus 163 ~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~ 238 (389)
T PRK14295 163 LTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQ 238 (389)
T ss_pred eeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEE
Confidence 9999999999999999988889999999999987653 677788899999999999999999999999999999999
Q ss_pred EEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCC-cEEEE
Q 010330 268 VVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG-MKDLR 346 (513)
Q Consensus 268 V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG-~~~l~ 346 (513)
|.||+|+++|++|+|+|+|++...++.+|||||+|+|++|+.|+|+|+||+++++|+|.+||+|++++|+|||| .+.|+
T Consensus 239 V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ 318 (389)
T PRK14295 239 VRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVK 318 (389)
T ss_pred EEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEE
Confidence 99999999999999999999877777899999999999999999999999999999999999999999999999 47999
Q ss_pred eCCCCCCCCEEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 347 IPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 347 Ip~g~qpG~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
||+++++|++++|+|+|||.. ++.+|||||+|+|.||+.|+++|+++|++|++..
T Consensus 319 ip~g~~~g~~iri~G~G~p~~--~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~~ 373 (389)
T PRK14295 319 LPPGTPNGRVLRVRGKGAVRK--DGTRGDLLVTVEVAVPKDLSGKAREALEAFREAT 373 (389)
T ss_pred ECCccCCCcEEEECCCCcCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999964 3468999999999999999999999999999754
No 19
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-78 Score=636.53 Aligned_cols=344 Identities=38% Similarity=0.709 Sum_probs=302.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~-~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~ 121 (513)
.+|||++|||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||+||+||.+|+.||+||++++.++.++++
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g 82 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGG 82 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCC
Confidence 4799999999999999999999999999999999974 668899999999999999999999999999988764211111
Q ss_pred CCCCCCCcc----cccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCC
Q 010330 122 NTSQGVDPF----ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSC 197 (513)
Q Consensus 122 ~~~~g~d~~----dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C 197 (513)
.. ...+++ |+|++|||+. +.+ +. ....+.++.|+.+.|.|||||+|+|+++++.+.+.+.|+.|
T Consensus 83 ~~-~~~~~~~~f~d~f~~~fg~g-----~~~--~~----~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C 150 (373)
T PRK14301 83 FS-SAEDIFSHFSDIFGDLFGFS-----GGG--SR----RGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDC 150 (373)
T ss_pred cc-cccccccchHHHHHHHhhcc-----Ccc--cc----cCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCC
Confidence 10 011222 4555555311 000 00 11234678999999999999999999999999999999999
Q ss_pred CCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCC
Q 010330 198 GGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 277 (513)
Q Consensus 198 ~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G 277 (513)
+|+|........+|+.|+|+|.++..+ |++++..+|+.|+|+|+++.+.|..|+|.|++.+.++++|.||+|+++|
T Consensus 151 ~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G 226 (373)
T PRK14301 151 GGSGAAPGTSPETCRHCGGSGQVRQSQ----GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTG 226 (373)
T ss_pred CCcccCCCCCCcccCCccCeeEEEEEe----eeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCC
Confidence 999999888889999999999987542 7788889999999999999999999999999999999999999999999
Q ss_pred CEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCCEE
Q 010330 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV 357 (513)
Q Consensus 278 ~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~~~ 357 (513)
++|+|+|+|++...++.+|||||+|+|++|+.|+|+|+||+++++|+|.+||+|+++.|+||||++.|+||+++++|+++
T Consensus 227 ~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ 306 (373)
T PRK14301 227 SRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVF 306 (373)
T ss_pred CEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEE
Confidence 99999999998776778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 358 KLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 358 ~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
+|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+.+.
T Consensus 307 ri~g~G~p~~~~-~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~~ 351 (373)
T PRK14301 307 RLRGKGLPYLGS-SQKGDLLVEVSVVTPTKLTKRQEELLREFEALE 351 (373)
T ss_pred EEcCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999998654 368999999999999999999999999999753
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.4e-78 Score=632.71 Aligned_cols=345 Identities=38% Similarity=0.718 Sum_probs=304.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~-~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~ 121 (513)
.+|||++|||+++||.+|||+|||+||++||||+|+ +++++++|++|++||+||+||.+|+.||+||++++.++..+ +
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~-~ 81 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFS-G 81 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCC-C
Confidence 589999999999999999999999999999999998 46789999999999999999999999999999887642111 1
Q ss_pred CCCCC---CCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCC
Q 010330 122 NTSQG---VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCG 198 (513)
Q Consensus 122 ~~~~g---~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~ 198 (513)
.++.. .++.|+|++|||.. +++ + + .....+.++.|+.+.|.|||||+|+|+++++.+.+.+.|+.|+
T Consensus 82 ~~~~~~~~~~~~d~f~~~fg~g--~~~--~---~---~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~ 151 (366)
T PRK14294 82 FSGFDDIFSSFGDIFEDFFGFG--GGR--R---G---RSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECH 151 (366)
T ss_pred cCccccchhhhhhhHHHhhccC--CCc--C---C---cccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCC
Confidence 11110 12347788888510 000 0 0 0011245789999999999999999999999999999999999
Q ss_pred CCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCCC
Q 010330 199 GTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGA 278 (513)
Q Consensus 199 GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~ 278 (513)
|+|........+|+.|+|+|.++... |++++..+|+.|+|+|+++.+.|..|+|.|++.+.++++|.||+|+++|+
T Consensus 152 G~G~~~~~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 227 (366)
T PRK14294 152 GSGCEPGTSPTTCPQCGGSGQVTQSQ----GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGS 227 (366)
T ss_pred CccccCCCCcccCCCcCCeEEEEEEe----eeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCc
Confidence 99999888889999999999886532 78888899999999999999999999999999999999999999999999
Q ss_pred EEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCCEEE
Q 010330 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVK 358 (513)
Q Consensus 279 ~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~~~~ 358 (513)
+|+|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+||||++.|+||+++++|++++
T Consensus 228 ~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~ir 307 (366)
T PRK14294 228 RLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFR 307 (366)
T ss_pred EEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEE
Confidence 99999999987777889999999999999999999999999999999999999999999999998999999999999999
Q ss_pred EccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 359 LQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 359 l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus 308 i~G~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~ 351 (366)
T PRK14294 308 FKGKGIPSLRG-GGRGDQIIEVEVKVPTRLTKKQEELLTEFARLE 351 (366)
T ss_pred ECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 99999997654 368999999999999999999999999999764
No 21
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-77 Score=631.44 Aligned_cols=358 Identities=37% Similarity=0.682 Sum_probs=310.7
Q ss_pred ccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccC
Q 010330 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 119 (513)
Q Consensus 41 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~-~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~ 119 (513)
+..+|||++|||+++||.+|||+|||+||++||||+|+. +.|+++|++|++||++|+||.+|++||+||+++++++.+.
T Consensus 2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~ 81 (386)
T PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGG 81 (386)
T ss_pred CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCC
Confidence 346899999999999999999999999999999999974 5789999999999999999999999999999887532111
Q ss_pred CCCCCCCCCccccccc---ccCCCCCCCCCCCCCCCcc-ccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeecc
Q 010330 120 LSNTSQGVDPFELYSA---FFGGSDGLFGGVGEAGGIN-FNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 195 (513)
Q Consensus 120 ~~~~~~g~d~~dlF~~---fFgg~~g~fg~~g~~g~~~-~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~ 195 (513)
++.++.++++.|+|+. +|+++.+++++ .+.+. ......+.++.|+++.|.|||||+|+|+++++.+.+.+.|+
T Consensus 82 ~~~~~~~~~~~~~f~~f~~~fg~~~gg~~~---~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 158 (386)
T PRK14289 82 GGFSGEGMSMEDIFSMFGDIFGGHGGGFGG---FGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCS 158 (386)
T ss_pred CCCCCCCcChhhhhHHhhhhhcccccCccc---ccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccC
Confidence 1111112334455443 35432111110 00000 00112245789999999999999999999999999999999
Q ss_pred CCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCc
Q 010330 196 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 275 (513)
Q Consensus 196 ~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~ 275 (513)
.|+|+|.........|+.|+|+|.++..+++++|++++..+|+.|+|+|+++...|..|+|.|++.+.++++|.||+|++
T Consensus 159 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 238 (386)
T PRK14289 159 HCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVA 238 (386)
T ss_pred CCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCC
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCC
Q 010330 276 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGD 355 (513)
Q Consensus 276 ~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~ 355 (513)
+|++|+|+|+|++...++.+|||||+|++++|+.|+|+++||++++.|+|.+|++|+++.|+|+||++.|+||+++++|+
T Consensus 239 ~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~ 318 (386)
T PRK14289 239 EGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGK 318 (386)
T ss_pred CCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCc
Confidence 99999999999987667789999999999999999999999999999999999999999999999998999999999999
Q ss_pred EEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 010330 356 TVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 402 (513)
Q Consensus 356 ~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~ 402 (513)
+++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus 319 ~~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~ 364 (386)
T PRK14289 319 VLRLRNKGLPSVNG-YGTGDLLVNVSVYIPETLSKEEKQTLEKMENS 364 (386)
T ss_pred EEEECCCCcCCCCC-CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 99999999997654 36899999999999999999999999999985
No 22
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-77 Score=628.53 Aligned_cols=346 Identities=35% Similarity=0.675 Sum_probs=303.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccc--cC-C
Q 010330 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEY--DG-L 120 (513)
Q Consensus 44 ~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~--~~-~ 120 (513)
+|||++|||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+|+.+|+.||+||++++.++. ++ +
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g 82 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGG 82 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCC
Confidence 79999999999999999999999999999999998778999999999999999999999999999998875321 10 1
Q ss_pred CCCCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCCCC
Q 010330 121 SNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGT 200 (513)
Q Consensus 121 ~~~~~g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~Gt 200 (513)
+.++.+.++.++|++||+++ |++.+ . ......+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+
T Consensus 83 ~~~~~~~~~~~~f~~~f~~~---~gg~~---~--~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~ 154 (372)
T PRK14300 83 NHGGFHPDINDIFGDFFSDF---MGGSR---R--SRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGS 154 (372)
T ss_pred CCCccccchhhhHHHHHHhh---cCCCC---C--CCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCc
Confidence 10111113346777777542 22111 0 0011123578999999999999999999999999999999999999
Q ss_pred CcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCCCEE
Q 010330 201 GAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATM 280 (513)
Q Consensus 201 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~I 280 (513)
|...+....+|+.|+|+|.++.. +|++++..+|+.|+|+|+++.+.|..|+|.|++.+.+.++|.||+|+++|++|
T Consensus 155 g~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i 230 (372)
T PRK14300 155 GSEKGETVTTCDACSGVGATRMQ----QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI 230 (372)
T ss_pred ccCCCCCCccCCCccCeEEEEEe----eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEE
Confidence 99988888999999999988653 37888888999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCC-cEEEEeCCCCCCCCEEEE
Q 010330 281 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG-MKDLRIPSGVQPGDTVKL 359 (513)
Q Consensus 281 rl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG-~~~l~Ip~g~qpG~~~~l 359 (513)
+++|+|++..+++.+|||||+|++++|+.|+|+|+||+++++|+|.+||+|+++.|+|||| .++|+||+|+++|++++|
T Consensus 231 ~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri 310 (372)
T PRK14300 231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRL 310 (372)
T ss_pred EEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEE
Confidence 9999999877778899999999999999999999999999999999999999999999998 579999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 010330 360 QQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 402 (513)
Q Consensus 360 ~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~ 402 (513)
+|+|||..+. ..+|||||+|+|.||++||++|+++|++|+++
T Consensus 311 ~g~G~p~~~~-~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~~ 352 (372)
T PRK14300 311 RSKGMSKMRS-TIRGDMLTHIHVEVPKNLSKRQRELLEEFKKE 352 (372)
T ss_pred CCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999997643 36899999999999999999999999999864
No 23
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-77 Score=628.19 Aligned_cols=346 Identities=39% Similarity=0.715 Sum_probs=300.6
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCC
Q 010330 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL 120 (513)
Q Consensus 42 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~-~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~ 120 (513)
+.+|||++|||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+|+.+|+.||+||++++..+.+++
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~ 81 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGG 81 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCC
Confidence 3579999999999999999999999999999999997 466889999999999999999999999999998876432111
Q ss_pred CCCCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCCCC
Q 010330 121 SNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGT 200 (513)
Q Consensus 121 ~~~~~g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~Gt 200 (513)
+.++. .++.|+|++||+.+ ||+++ +. .+..+.++.|+.+.|.|||||+|+|+++++.+.+.+.|+.|+|+
T Consensus 82 ~~~~~-~~~~~~f~~~f~~~---fgg~~--~~----~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~ 151 (371)
T PRK10767 82 GFGGG-GGFGDIFGDIFGDI---FGGGR--GG----GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGS 151 (371)
T ss_pred CCCCc-cccccchhhhhhhh---ccCCc--cc----cCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCc
Confidence 11110 01123344444321 22100 00 01224678999999999999999999999999999999999999
Q ss_pred CcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCCCEE
Q 010330 201 GAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATM 280 (513)
Q Consensus 201 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~I 280 (513)
|.........|+.|+|+|.++..+ |++++..+|+.|+|+|+++.+.|..|.|.|++.+.+.++|.||+|+.+|++|
T Consensus 152 G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 227 (371)
T PRK10767 152 GAKPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRI 227 (371)
T ss_pred ccCCCCCCccCCCCCCeeEEEEee----ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEE
Confidence 999888888999999999876543 7788788999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCCEEEEc
Q 010330 281 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQ 360 (513)
Q Consensus 281 rl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~~~~l~ 360 (513)
+|+|+|++..+++.+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||.+.|+||+++++|++++|+
T Consensus 228 ~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~ 307 (371)
T PRK10767 228 RLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLR 307 (371)
T ss_pred EEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEEC
Confidence 99999998766778999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 010330 361 QMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 402 (513)
Q Consensus 361 g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~ 402 (513)
|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|++.
T Consensus 308 g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~ 348 (371)
T PRK10767 308 GKGVKSVRS-GARGDLYCQVVVETPVNLTKRQKELLEEFEES 348 (371)
T ss_pred CCCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 999997654 46899999999999999999999999999964
No 24
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-77 Score=629.15 Aligned_cols=356 Identities=37% Similarity=0.685 Sum_probs=307.0
Q ss_pred cccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccC
Q 010330 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 119 (513)
Q Consensus 40 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~ 119 (513)
|+.++|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||++|+|+.+|++||+||++++.+....
T Consensus 1 ~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~ 80 (378)
T PRK14283 1 MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQE 80 (378)
T ss_pred CCCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccc
Confidence 45578999999999999999999999999999999999888899999999999999999999999999999877521100
Q ss_pred CCCCCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCCC
Q 010330 120 LSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGG 199 (513)
Q Consensus 120 ~~~~~~g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~G 199 (513)
+. ..+.++.++|..|+++.+..|..++ +++. ....+.++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus 81 ~~--~~~~~~~~~~~~~~~~~~~~f~~~~-fgg~---~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G 154 (378)
T PRK14283 81 DI--FNNINFEDIFQGFGFGIGNIFDMFG-FGGG---SRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNG 154 (378)
T ss_pred cc--ccccCccccccccccchhhhccccc-cCCC---CCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCc
Confidence 00 0011122333332211000011000 0000 0112357899999999999999999999999999999999999
Q ss_pred CCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCCCE
Q 010330 200 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGAT 279 (513)
Q Consensus 200 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~ 279 (513)
+|...+.....|+.|+|+|.++..+++++|++++..+|+.|+|+|+.+.+.|..|+|.|++.+.+.++|.||+|+++|++
T Consensus 155 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~ 234 (378)
T PRK14283 155 SRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSR 234 (378)
T ss_pred cccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcE
Confidence 99998888899999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCCEEEE
Q 010330 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKL 359 (513)
Q Consensus 280 Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~~~~l 359 (513)
|+|+|+|++...++.+|||||+|+|++|+.|+|+|+||++++.|+|.+|++|+++.|+||||.+.|.||+++++|++++|
T Consensus 235 i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri 314 (378)
T PRK14283 235 LRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRL 314 (378)
T ss_pred EEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEE
Confidence 99999999876667899999999999999999999999999999999999999999999999889999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 010330 360 QQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 402 (513)
Q Consensus 360 ~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~ 402 (513)
+|+|||.... ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus 315 ~g~G~p~~~~-~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~~ 356 (378)
T PRK14283 315 KGHGMPSLRW-SGKGNLYVKVKVVVPKKLSPKQKELLREFASI 356 (378)
T ss_pred CCCCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 9999997653 36899999999999999999999999999864
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-77 Score=629.00 Aligned_cols=357 Identities=36% Similarity=0.650 Sum_probs=306.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCC-C
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL-S 121 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~-~ 121 (513)
.+|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||+||+||.+|++||+||++++..+.+.. +
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 81 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG 81 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence 479999999999999999999999999999999999888999999999999999999999999999998775422110 0
Q ss_pred -CC---CCCCCcccccccccCCCC--CCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeecc
Q 010330 122 -NT---SQGVDPFELYSAFFGGSD--GLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 195 (513)
Q Consensus 122 -~~---~~g~d~~dlF~~fFgg~~--g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~ 195 (513)
.+ ..+.++.|+|++||+.++ +.|++.+..++ .......+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+
T Consensus 82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~-~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 160 (382)
T PRK14291 82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRE-RRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCE 160 (382)
T ss_pred ccccccccCCCHHHHHHHHHHhccccccccccccccc-cccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCC
Confidence 01 012245577887753221 11221100000 000112245789999999999999999999999999999999
Q ss_pred CCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCc
Q 010330 196 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 275 (513)
Q Consensus 196 ~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~ 275 (513)
.|+|+|........+|+.|+|+|.++.. .|++++..+|+.|+|+|. +.+.|..|+|.|++.+.++++|.||||+.
T Consensus 161 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 235 (382)
T PRK14291 161 ACGGTGYDPGSGEKVCPTCGGSGEIYQR----GGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVD 235 (382)
T ss_pred CCccccCCCCCCCccCCCCCCceEEEEe----cceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCC
Confidence 9999999988889999999999988764 267778899999999995 78899999999999999999999999999
Q ss_pred CCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCc-EEEEeCCCCCCC
Q 010330 276 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPG 354 (513)
Q Consensus 276 ~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~-~~l~Ip~g~qpG 354 (513)
+|++|+|+|+|+++..++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+||+ ++|+||+|+++|
T Consensus 236 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G 315 (382)
T PRK14291 236 NGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEG 315 (382)
T ss_pred CCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCC
Confidence 9999999999999877889999999999999999999999999999999999999999999999997 799999999999
Q ss_pred CEEEEccCCCCCCCCCCCCCcEEEEEEEEcCC--CCC------hhHHHHHHHHHhhcCCC
Q 010330 355 DTVKLQQMGVPDINNPSVRGDHLFIVNVLIPK--DIS------DPERALVEEIAFLKSPG 406 (513)
Q Consensus 355 ~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~--~ls------~~qr~lLe~l~~~~~~~ 406 (513)
++++|+|+|||..+. ..+|||||+|+|.||+ .|+ ++|+++|++|+.++...
T Consensus 316 ~~i~i~G~G~p~~~~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~~~~ 374 (382)
T PRK14291 316 DKIRVPGKGMPRLKG-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLLPEP 374 (382)
T ss_pred CEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhcCCc
Confidence 999999999998654 3689999999999998 599 99999999999877554
No 26
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=2e-77 Score=623.82 Aligned_cols=347 Identities=44% Similarity=0.781 Sum_probs=310.0
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCCCCC
Q 010330 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS 124 (513)
Q Consensus 45 d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~~~~ 124 (513)
|||++|||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+|+.+|+.||+||++++.++.++++++.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 80 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF 80 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence 79999999999999999999999999999999987789999999999999999999999999999988764221101110
Q ss_pred C-----C-CCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCC
Q 010330 125 Q-----G-VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCG 198 (513)
Q Consensus 125 ~-----g-~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~ 198 (513)
. + .++.|+|++|||+. +++ + . .....+.++.|+.++|.|||||+|+|+++++.+++.+.|+.|+
T Consensus 81 ~~~~~~~~~~~~~~f~~~fg~~---~g~-~-~-----~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~ 150 (354)
T TIGR02349 81 NGFDIGFFGDFGDIFGDFFGGG---GGS-G-R-----RRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCH 150 (354)
T ss_pred CCccccCcCchhhhHHHHhccC---ccc-C-c-----cccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCC
Confidence 0 1 13457888888642 110 0 0 0112346789999999999999999999999999999999999
Q ss_pred CCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCCC
Q 010330 199 GTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGA 278 (513)
Q Consensus 199 GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~ 278 (513)
|+|........+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++...|..|.|.|++.+.+.++|.||+|+++|+
T Consensus 151 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 230 (354)
T TIGR02349 151 GTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQ 230 (354)
T ss_pred CCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCC
Confidence 99999888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCCEEE
Q 010330 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVK 358 (513)
Q Consensus 279 ~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~~~~ 358 (513)
+|+|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+||||.+.|.||+++++|++++
T Consensus 231 ~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~ 310 (354)
T TIGR02349 231 RLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFR 310 (354)
T ss_pred EEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEE
Confidence 99999999987667789999999999999999999999999999999999999999999999988999999999999999
Q ss_pred EccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 010330 359 LQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 402 (513)
Q Consensus 359 l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~ 402 (513)
|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|++.
T Consensus 311 i~g~G~p~~~~-~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 311 LKGKGVPRLRG-NGRGDLLVTVKVETPKNLSKEQKELLEELAEA 353 (354)
T ss_pred ECCCCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999997654 36899999999999999999999999999863
No 27
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-76 Score=620.63 Aligned_cols=347 Identities=34% Similarity=0.636 Sum_probs=306.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCCCC
Q 010330 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNT 123 (513)
Q Consensus 44 ~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~~~ 123 (513)
.|||++|||+++||.+|||+|||+||++||||+|++++|+++|++|++||++|+||.+|+.||+||+++..+..++++.+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~ 81 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG 81 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence 59999999999999999999999999999999998888999999999999999999999999999987642211111112
Q ss_pred CCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCCCCCcc
Q 010330 124 SQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAK 203 (513)
Q Consensus 124 ~~g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~GtG~~ 203 (513)
+.++|+.|+|+.|||+. ++++ + . ....+.++.|+.+.+.|||+|+|+|+++++.+.+...|+.|+|+|..
T Consensus 82 ~~~~d~~d~f~~~fg~~--~~~~-~-~------~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~ 151 (371)
T PRK14292 82 GMGFDPMDIFEQLFGGA--GFGG-G-R------GRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTE 151 (371)
T ss_pred ccCCChHHHHHHhhCCC--CcCC-C-C------CcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccC
Confidence 22356778999999642 1111 0 0 01124578999999999999999999999999999999999999998
Q ss_pred ccc-ccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCCCEEEE
Q 010330 204 SSN-CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI 282 (513)
Q Consensus 204 ~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl 282 (513)
... ...+|+.|+|+|.++..+++.+|++++..+|+.|+|.|+.+...|..|.|.|++.+.++++|.||+|+.+|++|+|
T Consensus 152 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~ 231 (371)
T PRK14292 152 PGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRV 231 (371)
T ss_pred CCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEE
Confidence 664 4789999999999998888888999988999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCCEEEEccC
Q 010330 283 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQM 362 (513)
Q Consensus 283 ~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~~~~l~g~ 362 (513)
+|+|++...+ . |||||+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+||||+..|+||+|+++|++++|+|+
T Consensus 232 ~G~G~~~~~~-~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~ 309 (371)
T PRK14292 232 AGMGNEGPGG-N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQ 309 (371)
T ss_pred ecCcCCCCCC-C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCC
Confidence 9999986443 3 9999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred CCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 363 GVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 363 G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
|||..++ ..+|||||+|+|.+|+.|+++|+++|++|++..
T Consensus 310 G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~ 349 (371)
T PRK14292 310 GMPRLQG-AGTGDLIVEYEIAVPKQLSPEAREALEAYARAV 349 (371)
T ss_pred CCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 9997654 358999999999999999999999999998653
No 28
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-76 Score=621.15 Aligned_cols=354 Identities=45% Similarity=0.837 Sum_probs=312.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 122 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~~ 122 (513)
..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|++||+||++++.++.+.++.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~ 81 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM 81 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence 37999999999999999999999999999999999988899999999999999999999999999999877532110010
Q ss_pred CCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCCCCCc
Q 010330 123 TSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGA 202 (513)
Q Consensus 123 ~~~g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~GtG~ 202 (513)
+.. .++.|+|++||+++++ ++ + .+ ... ....+.++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|.
T Consensus 82 ~~~-~~~~d~f~~~fg~~~~-~~--~-~~-~~~-~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~ 154 (374)
T PRK14293 82 GDM-GGFADIFETFFSGFGG-AG--G-QG-GRR-RRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGA 154 (374)
T ss_pred ccc-cchHHHHHHHhcccCC-CC--C-CC-ccc-cccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCC
Confidence 101 1234788889864211 11 0 00 000 0122457899999999999999999999999999999999999999
Q ss_pred ccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCCCEEEE
Q 010330 203 KSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI 282 (513)
Q Consensus 203 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl 282 (513)
........|+.|+|+|.++..+++++|++++..+|+.|+|.|+++...|..|.|.|++.+.++++|.||||+++|++|+|
T Consensus 155 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l 234 (374)
T PRK14293 155 KPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRV 234 (374)
T ss_pred CCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEE
Confidence 98888899999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCCEEEEccC
Q 010330 283 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQM 362 (513)
Q Consensus 283 ~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~~~~l~g~ 362 (513)
+|+|++..+++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+||||+++|+||+++++|++++|+|+
T Consensus 235 ~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~ 314 (374)
T PRK14293 235 SGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENK 314 (374)
T ss_pred ccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCC
Confidence 99999876667789999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 363 GVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 363 G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
|||..+.++.+|||||+|+|.||+.|+++|+++|++|+++.
T Consensus 315 G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~~ 355 (374)
T PRK14293 315 GVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLAKIK 355 (374)
T ss_pred CCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 99986655568999999999999999999999999999764
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.1e-76 Score=614.38 Aligned_cols=351 Identities=34% Similarity=0.645 Sum_probs=301.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCC
Q 010330 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (513)
Q Consensus 44 ~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~--~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~ 121 (513)
+|||++|||+++||.+|||+|||+||++||||+|++. .|+++|++|++||++|+|+.+|++||+||++++.++.++.+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 7999999999999999999999999999999999853 68999999999999999999999999999987753111000
Q ss_pred CCC-C-CCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCCC
Q 010330 122 NTS-Q-GVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGG 199 (513)
Q Consensus 122 ~~~-~-g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~G 199 (513)
.++ . ..++.|+|+.|||+. |++.. +++... ....+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~---~~~~~-~~~~~~-~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G 157 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGN---FGSDF-FSGFGN-QQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG 157 (365)
T ss_pred ccccccccchhHHHHHHhcCc---ccccc-cccccc-ccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence 000 0 125678899999642 11100 000000 0111234789999999999999999999999999999999999
Q ss_pred CCcccccccccCcccCcccEEEEEeecCCcceee--eecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCC
Q 010330 200 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQ--VSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 277 (513)
Q Consensus 200 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~--~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G 277 (513)
+|.... ...+|+.|+|+|.++..+. +|++.+ ..+|+.|+|.|+++.+.|..|+|.|++.+.++++|.||||+.+|
T Consensus 158 ~g~~~~-~~~~C~~C~G~G~~~~~~~--~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G 234 (365)
T PRK14290 158 TGAKNG-KLITCPTCHGTGQQRIVRG--QGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDN 234 (365)
T ss_pred ccCCCC-CCccCCCCCCcCEEEEEec--cCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCC
Confidence 999875 6789999999998876653 555543 57999999999999999999999999999999999999999999
Q ss_pred CEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCCEE
Q 010330 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV 357 (513)
Q Consensus 278 ~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~~~ 357 (513)
++|+|+|+|+. .++.+|||||+|++++|+.|+|+|+||+++++|+|.+|++|+++.|+|++|.++|+||+++++|+++
T Consensus 235 ~~i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~i 312 (365)
T PRK14290 235 LRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVL 312 (365)
T ss_pred cEEEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEE
Confidence 99999999985 5788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhcCC
Q 010330 358 KLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSP 405 (513)
Q Consensus 358 ~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~~~ 405 (513)
+|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+.++..
T Consensus 313 ri~g~G~p~~~~-~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~~ 359 (365)
T PRK14290 313 KIKGAGMPHLNG-HGSGDLLVRINVEVPKRLTSKQKELIREFFDIKEN 359 (365)
T ss_pred EECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 999999997654 36899999999999999999999999999976654
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-70 Score=554.77 Aligned_cols=329 Identities=36% Similarity=0.663 Sum_probs=295.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 122 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~~ 122 (513)
++.||+||||+++||++|||+|||+||++||||+|++ +.++|++|++||||||||+||++||+||+++++++++++++
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~ 80 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGF 80 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCC
Confidence 5789999999999999999999999999999999975 88999999999999999999999999999999765432211
Q ss_pred CCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCCCCCc
Q 010330 123 TSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGA 202 (513)
Q Consensus 123 ~~~g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~GtG~ 202 (513)
+. |++||+ |++.++ ..+.++.|+.+++.|||||+|.|.++++.+++..+|+.|+|+|.
T Consensus 81 -------~~-f~~~F~-----~g~~~~---------~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGg 138 (337)
T KOG0712|consen 81 -------GG-FSQFFG-----FGGNGG---------RGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGG 138 (337)
T ss_pred -------cc-HHHhcc-----CCCcCc---------cccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCC
Confidence 11 888885 222111 11234999999999999999999999999999999999999999
Q ss_pred ccccccccCcccCcccEEEEEeecCCcceeee-ecCCCCCCCcEE--EeeeeeecCCceEEeeeeEEEEEcCCCCcCCCE
Q 010330 203 KSSNCIQSCKACWGRGGVLKTQRTPFGLISQV-STCSKCGGDGKI--IIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGAT 279 (513)
Q Consensus 203 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~~--i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~ 279 (513)
.+.... .|+.|.|+|..+.+.+..+|+.++. ..|..|+|+|.+ ..+.|..|.|.+++...+.++|.|++|+.++++
T Consensus 139 ksg~~~-~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~k 217 (337)
T KOG0712|consen 139 KSGSAP-KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQK 217 (337)
T ss_pred CCCCCC-CCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccce
Confidence 887654 8999999999999999999998876 589999999998 456799999999999999999999999999999
Q ss_pred EEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCc-EEEEeCCC--CCCCCE
Q 010330 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG--VQPGDT 356 (513)
Q Consensus 280 Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~-~~l~Ip~g--~qpG~~ 356 (513)
|.+.|++++. .+..|||++|.|..++|+.|.|.|+||++..+|++.||++|+.+.+.||||+ +.+.++|| ++||++
T Consensus 218 i~f~geadea-~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~ 296 (337)
T KOG0712|consen 218 ITFKGEADEA-PGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDT 296 (337)
T ss_pred eeeeeeeeec-CCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHE
Confidence 9999999986 4566999999999999999999999999999999999999999999999998 57888887 999999
Q ss_pred EEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHH
Q 010330 357 VKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 400 (513)
Q Consensus 357 ~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~ 400 (513)
++|+|+|||+.+++ +|||||+|+|+||+ +++++...|+.++
T Consensus 297 ~~v~~~gmp~~~~~--~g~lyi~~~v~fp~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 297 KRVEGEGMPIFRNP--KGDLYIKFEVKFPK-LSPSQLKMLEDLL 337 (337)
T ss_pred EeecCCCcccccCC--CCcEEEEEEEEcCC-CChHHHHHHHhhC
Confidence 99999999999887 99999999999999 9999988888763
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-60 Score=484.46 Aligned_cols=276 Identities=38% Similarity=0.660 Sum_probs=231.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccC---
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG--- 119 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~--- 119 (513)
.+|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|+.||+||++++..+..+
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 47999999999999999999999999999999999888899999999999999999999999999999865432111
Q ss_pred --CC-CCCCC---CCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeee
Q 010330 120 --LS-NTSQG---VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFET 193 (513)
Q Consensus 120 --~~-~~~~g---~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~ 193 (513)
++ ++..+ .++.|+|++|||+. +++++ ++.........+.++.|+.+++.|||+|++.|+++++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~-~~~~~---~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~---- 154 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLFGGR-GGFGG---FGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA---- 154 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHhCCC-CCCCC---cccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC----
Confidence 00 11111 24457889998642 11111 1100000012245789999999999999999999876541
Q ss_pred ccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCC
Q 010330 194 CDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPG 273 (513)
Q Consensus 194 C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~G 273 (513)
.++++|.||+|
T Consensus 155 ---------------------------------------------------------------------g~~~~V~Ip~G 165 (291)
T PRK14299 155 ---------------------------------------------------------------------GERLSVRIPPG 165 (291)
T ss_pred ---------------------------------------------------------------------CEEEEEecCCC
Confidence 14578999999
Q ss_pred CcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCC
Q 010330 274 VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQP 353 (513)
Q Consensus 274 v~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qp 353 (513)
+++|++|+++|+|++. |||||+|++++|+.|+|+|+||+++++|++.+|++|+++.|+||||++.|+||+++++
T Consensus 166 ~~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~ 239 (291)
T PRK14299 166 VREGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQA 239 (291)
T ss_pred cCCCcEEEECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCcCC
Confidence 9999999999999862 9999999999999999999999999999999999999999999999989999999999
Q ss_pred CCEEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 354 GDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 354 G~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
|++++|+|+|||.. ++.+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus 240 g~~~rl~g~G~p~~--~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~~~ 287 (291)
T PRK14299 240 GRKLRLKGKGWPRG--PAGRGDQYAEVRITIPTRPTPEEERLYKQLAELY 287 (291)
T ss_pred CCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 99999999999963 3468999999999999999999999999998764
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=1.6e-58 Score=472.67 Aligned_cols=287 Identities=28% Similarity=0.475 Sum_probs=238.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhccccccc----CCCcccc
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA----GITGEYD 118 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~----g~~~~~~ 118 (513)
.+|||++|||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+|+.+|+.||+||+. ++.+...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~ 82 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ 82 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccc
Confidence 379999999999999999999999999999999998888999999999999999999999999999864 2221111
Q ss_pred CCCC-CCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCC
Q 010330 119 GLSN-TSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSC 197 (513)
Q Consensus 119 ~~~~-~~~g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C 197 (513)
.+++ .....++.++|+.|||+. ++.. ....+.++.|+.+++.|||+|+++|+.+++.+.+.+ |
T Consensus 83 ~~~~~~~~~~~~~~~f~~~~g~~----~~~~--------~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~ 146 (306)
T PRK10266 83 HGDGQSFNAEDFDDIFSSIFGQH----ARQS--------RQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----Y 146 (306)
T ss_pred cCCCCCCCCCCHHHHHHHHhCCC----CCCC--------CCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----c
Confidence 0011 011124557888888541 1100 011235789999999999999999999998886531 1
Q ss_pred CCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCC
Q 010330 198 GGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 277 (513)
Q Consensus 198 ~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G 277 (513)
.|.|.+.. ...++++|.||+|+++|
T Consensus 147 -----------------~g~G~~~~--------------------------------------~~~~~~~V~Ip~G~~~G 171 (306)
T PRK10266 147 -----------------NAFGMIEQ--------------------------------------EIPKTLNVKIPAGVGNG 171 (306)
T ss_pred -----------------cCCCeEEE--------------------------------------eeeEEEEEEECCCCcCC
Confidence 12221100 11367999999999999
Q ss_pred CEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCCEE
Q 010330 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV 357 (513)
Q Consensus 278 ~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~~~ 357 (513)
++|+++|+|++...+..+|||||+|++++|+.|+|+|+||+++++||+.+|++|+++.|+|++|++.|+||+++++|+++
T Consensus 172 ~~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~ 251 (306)
T PRK10266 172 QRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRL 251 (306)
T ss_pred cEEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEE
Confidence 99999999998766778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 010330 358 KLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 403 (513)
Q Consensus 358 ~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~lLe~l~~~~ 403 (513)
+|+|+|||..+ .+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus 252 ri~g~G~p~~~---~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~~ 294 (306)
T PRK10266 252 RVKGKGLVSKK---QTGDLYAVLKIVMPPKPDEKTAALWQQLADAQ 294 (306)
T ss_pred EECCCCCCCCC---CCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 99999999642 58999999999999999999999999999863
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-44 Score=361.40 Aligned_cols=245 Identities=43% Similarity=0.794 Sum_probs=220.3
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCCCCC
Q 010330 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS 124 (513)
Q Consensus 45 d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~~~~ 124 (513)
|||+||||+++||.+|||+||++||++||||.|++++|.++|++|.+|||+|+|++||++||++|..+. ++
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~---------~~ 114 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH---------GE 114 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc---------cc
Confidence 999999999999999999999999999999999999999999999999999999999999999998761 11
Q ss_pred CCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCCCCCccc
Q 010330 125 QGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKS 204 (513)
Q Consensus 125 ~g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~GtG~~~ 204 (513)
.+.+|+++|..+|++. ..+...+.++.+++.++|+||.+|+.+.+.+.....|.+|.|.|..+
T Consensus 115 ~~g~~~~~~~~~~~~~-----------------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~ 177 (288)
T KOG0715|consen 115 FGGNPFDVFLEFFGGK-----------------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEE 177 (288)
T ss_pred ccCCccchHHHhhccc-----------------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCccc
Confidence 2238899999988540 01224567888999999999999999999999999999999999999
Q ss_pred ccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCCCEEEEcc
Q 010330 205 SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRG 284 (513)
Q Consensus 205 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl~G 284 (513)
+.....|..|.|.|.+....+.+|.+. +|..|+|.|.++.+.|..|.|.|.+...+.+.|.+|+|+.++.+|++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~ 253 (288)
T KOG0715|consen 178 GAKRESCKTCSGRGLVSNPKEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAG 253 (288)
T ss_pred ccccccchhhhCcccccccccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEec
Confidence 999999999999998766555555443 9999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHH
Q 010330 285 EGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTE 327 (513)
Q Consensus 285 ~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~e 327 (513)
.|.. ||+|.+.|.+++.|+|+|.|++++..|++++
T Consensus 254 ~~~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 254 HGND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred CCcc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence 9864 9999999999999999999999999998764
No 34
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=355.08 Aligned_cols=313 Identities=32% Similarity=0.463 Sum_probs=238.5
Q ss_pred ccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccC
Q 010330 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 119 (513)
Q Consensus 41 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~-~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~ 119 (513)
...+|||++|||+++||.+|||+||||||+|||||+||+ |.|.++|++|+.||||||||++|+.||+||++++......
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~ 92 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKD 92 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccc
Confidence 346899999999999999999999999999999999995 8999999999999999999999999999999999854311
Q ss_pred CCCCCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCcceeEeeeccceeeEeeeEEEEEeeeeeeccCCCC
Q 010330 120 LSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGG 199 (513)
Q Consensus 120 ~~~~~~g~d~~dlF~~fFgg~~g~fg~~g~~g~~~~~~~~~~~~g~Di~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~G 199 (513)
+.++..+ .++|+.||+..+..+++ .+. .....+|.++...++.++++.|.|...+..-.+.+.|. |.|
T Consensus 93 ~~~g~~~---~~~f~~~f~dfg~~~~g-------~~~-~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g 160 (336)
T KOG0713|consen 93 GEGGGGG---NDIFSAFFGDFGVTVGG-------NPL-EEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APG 160 (336)
T ss_pred cccCCcc---cchHHHhhcccccccCC-------Ccc-cCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCc
Confidence 1111111 57788888654222221 111 12267899999999999999999986554444444433 221
Q ss_pred CCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEEcCCCCcCCCE
Q 010330 200 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGAT 279 (513)
Q Consensus 200 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~ 279 (513)
+- .|+-.=. +..++...|.+++.+ ...|..|.+.+...+...+++.+..|...|..
T Consensus 161 ~~-----------~~~~~~~-~~~~~~~~g~~~~~q------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~ 216 (336)
T KOG0713|consen 161 TR-----------KCNCRLE-MFTQQEGPGRFQMLQ------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPE 216 (336)
T ss_pred cc-----------ccCChhh-heeeccCCChhhhhh------------hhhhccCCccceeecCCceeeeeeecccCCce
Confidence 11 1111111 111222223332221 12244555566666789999999999999999
Q ss_pred EEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCc-EEEEeCCCCCCCCEEE
Q 010330 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVK 358 (513)
Q Consensus 280 Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~-~~l~Ip~g~qpG~~~~ 358 (513)
..+..+|.+. .-+.+||+++.+...+|+.|.|+++|+++.+.+++.+++.|+..++.++|+. +.++-..++-|+..++
T Consensus 217 ~~~~~~~~~h-~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~ 295 (336)
T KOG0713|consen 217 EIFELEGEPH-IDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTR 295 (336)
T ss_pred eeeeccCCcc-eecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhh
Confidence 9999998774 3578999999999999999999999999999999999999999999999997 3455556789999999
Q ss_pred EccCCCCCCCCCCCCCcEEEEEEEEcCCC-CCh
Q 010330 359 LQQMGVPDINNPSVRGDHLFIVNVLIPKD-ISD 390 (513)
Q Consensus 359 l~g~G~P~~~~~~~rGDL~V~f~V~~P~~-ls~ 390 (513)
..++|||........|.++++|.+.+|.+ +++
T Consensus 296 ~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 296 KKGEGMPLLKNRNEKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred hhhccchhhhccchhcceeEEecccCcccccch
Confidence 99999998777778899999999999965 665
No 35
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=1.7e-41 Score=367.68 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=113.7
Q ss_pred EEeeeeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEec
Q 010330 259 EVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVET 338 (513)
Q Consensus 259 ~v~~~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~t 338 (513)
.+.+.++++|.||+|+++|++|+|+|+|+.+. ++ +|||||+|++++|+.|+|+|+|||++++|+|.+||||+++.|+|
T Consensus 692 tvkE~ktLeVkIPpGVkdGqkIRf~GeGDegp-gg-~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpT 769 (871)
T TIGR03835 692 TTNEAITLEIQLPITSQLNISAIFKGFGHDFG-NG-CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFG 769 (871)
T ss_pred eeeeeEEEEEecCCCCCCCCEEEeccccCCCC-CC-CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeC
Confidence 34556899999999999999999999999853 34 49999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCCcEEEEEEEE-cCCC
Q 010330 339 VEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVL-IPKD 387 (513)
Q Consensus 339 ldG~~~l~Ip~g~qpG~~~~l~g~G~P~~~~~~~rGDL~V~f~V~-~P~~ 387 (513)
|||++.|+||++++||++++|+|+|||..+ +.||||||+|+|. ++++
T Consensus 770 LDGrVkLkIPpgTqpGqvLRIkGKGMP~~~--~~RGDLyV~f~V~~~~k~ 817 (871)
T TIGR03835 770 PNKLFNVRIPGGIKVNDQVIFKDLGLTKTK--YDKGSLIVHLYYSSVMKK 817 (871)
T ss_pred CCCCEEEeeCCCCCCCcEEEECCCCCCCCC--CCCCCEEEEEEEeecccc
Confidence 999989999999999999999999999543 4699999999998 4543
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.5e-23 Score=206.02 Aligned_cols=264 Identities=32% Similarity=0.476 Sum_probs=185.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHhhccchhhhhcccccccCCCcccc-C
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD-G 119 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~--~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~-~ 119 (513)
..|||++|+|.++|+.+||++||++||++||||+|+.+ .++++|++|.+||++|+|+.+|+.||+||++++.+... .
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~ 81 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS 81 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence 47999999999999999999999999999999999876 67778999999999999999999999999977665211 1
Q ss_pred CC--CC---CCCCCcccccccccCCCCCCCCC------------------CCCCCCcccc----------CCCCCCCCcc
Q 010330 120 LS--NT---SQGVDPFELYSAFFGGSDGLFGG------------------VGEAGGINFN----------FGNKGNFGLD 166 (513)
Q Consensus 120 ~~--~~---~~g~d~~dlF~~fFgg~~g~fg~------------------~g~~g~~~~~----------~~~~~~~g~D 166 (513)
+. .+ ....++.+.|..|||........ .+......+. ......+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (306)
T KOG0714|consen 82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPP 161 (306)
T ss_pred CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCC
Confidence 11 11 11224556777788633211100 0000000000 0000111112
Q ss_pred eeEeeeccceeeEeeeEEEEEeeeeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEE
Q 010330 167 IRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI 246 (513)
Q Consensus 167 i~~~l~lsLeEa~~G~~k~v~~~r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 246 (513)
+.+.+.+++++.+.|+.+...+.+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 188 (306)
T KOG0714|consen 162 VEHPLRVSLEDLYKGESKKMKISRQSF----------------------------------------------------- 188 (306)
T ss_pred ccCCcceeHHHhccccceeeecccccc-----------------------------------------------------
Confidence 333344456666666655544433211
Q ss_pred EeeeeeecCCceEEeeeeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEE--EecC
Q 010330 247 IIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK--ISVD 324 (513)
Q Consensus 247 i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~--~~Is 324 (513)
...... .......+.+.+.+++..|..+....+|+... +..|-++++.+..++|+.|.++++||... ..|+
T Consensus 189 --~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s 261 (306)
T KOG0714|consen 189 --TSNGRE----GSSRSRYLSISIKPGWKEGTKITFPEEGDEEP-GILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEIS 261 (306)
T ss_pred --cCCccc----ccCccceeEEeccCCcccccceeccccccccC-CcCcceeEEEEecCCcccccCCCccceecccceee
Confidence 000000 12235778999999999999999999998753 36788999999999999999999999999 9999
Q ss_pred HHHHhcCCeeEEeccCCc-EEEEeC-CCCCCCCEEEEccCCCCC
Q 010330 325 YTEAILGTSMEVETVEGM-KDLRIP-SGVQPGDTVKLQQMGVPD 366 (513)
Q Consensus 325 l~eAllG~~v~V~tldG~-~~l~Ip-~g~qpG~~~~l~g~G~P~ 366 (513)
+.+|++|....+++++|. ..+.+. .-+.++...+++++|+|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 262 LKEALLGVTVFVPTLDGRSYSLSINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred hhhhhcCcceeeecccCccccCcccccccCCCceeeecCCCCCC
Confidence 999999999999999996 244444 568999999999999985
No 37
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.84 E-value=4.3e-21 Score=159.17 Aligned_cols=80 Identities=30% Similarity=0.656 Sum_probs=70.6
Q ss_pred cceEEEecCHHHHhcCCeeEEeccCC-cEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCCChhHHH
Q 010330 316 NLFSKISVDYTEAILGTSMEVETVEG-MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERA 394 (513)
Q Consensus 316 DL~~~~~Isl~eAllG~~v~V~tldG-~~~l~Ip~g~qpG~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~ls~~qr~ 394 (513)
||+++++|+++||++|+++.|+|+|| .+.|+||+++++|++++|+|+|||...+++.+|||||+|+|.||++||++|++
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~ 80 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE 80 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence 79999999999999999999999999 68999999999999999999999998877789999999999999999999987
Q ss_pred H
Q 010330 395 L 395 (513)
Q Consensus 395 l 395 (513)
|
T Consensus 81 l 81 (81)
T PF01556_consen 81 L 81 (81)
T ss_dssp H
T ss_pred C
Confidence 6
No 38
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.77 E-value=2.3e-19 Score=199.89 Aligned_cols=78 Identities=38% Similarity=0.644 Sum_probs=72.4
Q ss_pred cccccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCc
Q 010330 38 MIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (513)
Q Consensus 38 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~ 115 (513)
..++.+++||++|||+++||..|||+|||+||++||||+|+++.|.++|++|++||+|||||.+|+.||+||.+|+..
T Consensus 567 t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 567 TIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 445578999999999999999999999999999999999987778999999999999999999999999999987653
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.4e-19 Score=174.44 Aligned_cols=72 Identities=54% Similarity=0.885 Sum_probs=68.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHhhccchhhhhcccccccCCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~-~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~ 114 (513)
..|+|+|||++++|+.++||||||+||++||||++++ |++.++|++||+||+||+|+.+|..||.||+.++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 5799999999999999999999999999999999987 88999999999999999999999999999987764
No 40
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6.9e-18 Score=161.52 Aligned_cols=70 Identities=59% Similarity=0.882 Sum_probs=64.9
Q ss_pred cccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHHhhccchhhhhccccc
Q 010330 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG--AEEKFKEISSAYEVLSDDEKRSVYDRFG 109 (513)
Q Consensus 40 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~--a~~~f~~i~~AyevL~d~~kR~~YD~~G 109 (513)
+....|||+||||+++|+.+||++|||++|++||||+|+... ++++|++|++||++|+|+.+|+.||+++
T Consensus 2 ~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 2 MSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred chhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 345689999999999999999999999999999999998543 8999999999999999999999999984
No 41
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7.2e-19 Score=177.39 Aligned_cols=91 Identities=45% Similarity=0.736 Sum_probs=79.2
Q ss_pred ccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccC
Q 010330 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 119 (513)
Q Consensus 41 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~-~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~ 119 (513)
..+.|||++|||+.+||.+||++|||+.|++||||+|| +|.|.++|+.+.+||+||+|+.+|+.||++|..+....
T Consensus 2 ~~~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~--- 78 (296)
T KOG0691|consen 2 VKDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ--- 78 (296)
T ss_pred cccchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch---
Confidence 34689999999999999999999999999999999999 58899999999999999999999999999998765432
Q ss_pred CCCCCCCCCcccccccccCC
Q 010330 120 LSNTSQGVDPFELYSAFFGG 139 (513)
Q Consensus 120 ~~~~~~g~d~~dlF~~fFgg 139 (513)
...++.+.|...|++
T Consensus 79 -----~~~d~~~~~r~~f~~ 93 (296)
T KOG0691|consen 79 -----GREDQADGFRKKFGS 93 (296)
T ss_pred -----hhhhHHHHHHHHhhh
Confidence 123677778777753
No 42
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.8e-18 Score=177.85 Aligned_cols=72 Identities=50% Similarity=0.899 Sum_probs=68.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHhhccchhhhhcccccccCCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP----GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~----~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~ 114 (513)
+.|||.+|+|+++||.+|||+|||++++.||||+..+| .|++.|+.|.+|||||+||.+|++||.||+.|++
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 46999999999999999999999999999999997653 5899999999999999999999999999999998
No 43
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.69 E-value=2.2e-17 Score=130.35 Aligned_cols=62 Identities=48% Similarity=0.817 Sum_probs=59.1
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHHhhccchhhhhcc
Q 010330 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG--AEEKFKEISSAYEVLSDDEKRSVYD 106 (513)
Q Consensus 45 d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~--a~~~f~~i~~AyevL~d~~kR~~YD 106 (513)
|||+||||+++|+.+|||+||+++++++|||+++... +++.|+.|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987654 8899999999999999999999998
No 44
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.4e-17 Score=172.65 Aligned_cols=75 Identities=44% Similarity=0.677 Sum_probs=68.6
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHhhccchhhhhcccccccCCCcc
Q 010330 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE 116 (513)
Q Consensus 42 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~--~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~ 116 (513)
+.+.||++|||.++|+..|||++||+||++||||+||+ .+|.++|+.|+.||+|||||..|+-||..-+.-|.+.
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 34799999999999999999999999999999999986 5789999999999999999999999999887666543
No 45
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.66 E-value=9.6e-17 Score=161.77 Aligned_cols=75 Identities=48% Similarity=0.736 Sum_probs=67.1
Q ss_pred cccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHHHHhhccchhhhhcccccccCCCc
Q 010330 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS----PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (513)
Q Consensus 40 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~----~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~ 115 (513)
.+..+|||+||||.++|+..||-||||+||.|||||.-.+ ..|+++|-.|..|-|||+||++|++||+ |++.+..
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~ 468 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDP 468 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCCh
Confidence 3456899999999999999999999999999999998765 3589999999999999999999999998 6666654
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.5e-17 Score=155.47 Aligned_cols=69 Identities=46% Similarity=0.763 Sum_probs=64.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHHHhhccchhhhhccccccc
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS---PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~---~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~ 111 (513)
.+|+|+||||.++|+.+||++||++||++||||++++ .++.++|+.++.||.||+|+++|+.||+.|.-
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 4699999999999999999999999999999999973 46899999999999999999999999998854
No 47
>PHA03102 Small T antigen; Reviewed
Probab=99.65 E-value=8.9e-17 Score=147.88 Aligned_cols=84 Identities=24% Similarity=0.318 Sum_probs=72.1
Q ss_pred cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCCccccCCC
Q 010330 44 TDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (513)
Q Consensus 44 ~d~Y~iLgv~~~a--s~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~~~~~~~~ 121 (513)
..+|++|||+++| |.+|||+|||++|+++|||+++ .+++|++|++||++|+|+.+|+.||.+|........
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg---~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~---- 77 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG---DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEE---- 77 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc---hhHHHHHHHHHHHHHhhHHHhccccccCCccccccc----
Confidence 5789999999999 9999999999999999999974 458999999999999999999999999977644321
Q ss_pred CCCCCCCcccccccccCC
Q 010330 122 NTSQGVDPFELYSAFFGG 139 (513)
Q Consensus 122 ~~~~g~d~~dlF~~fFgg 139 (513)
..|.++|...||+
T Consensus 78 -----~~~~~~f~~~fg~ 90 (153)
T PHA03102 78 -----DVPSGYVGATFGD 90 (153)
T ss_pred -----ccHHHHhhhhcCC
Confidence 1367788877754
No 48
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.59 E-value=1.8e-15 Score=117.63 Aligned_cols=58 Identities=67% Similarity=0.969 Sum_probs=54.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHHHHHhhccchh
Q 010330 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK--SPGAEEKFKEISSAYEVLSDDEK 101 (513)
Q Consensus 44 ~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~--~~~a~~~f~~i~~AyevL~d~~k 101 (513)
+|||++|||+++++.++||+||++|++++|||+++ .+.+.+.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999999999999999999999999997 46789999999999999999853
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.1e-15 Score=142.42 Aligned_cols=71 Identities=37% Similarity=0.657 Sum_probs=66.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHhhccchhhhhcccccccCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 113 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~-~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~ 113 (513)
..|+|+||||+++||.+|||+|||+|.+|||||++++ .+.++.|..|+.||+.|+|+..|..|..||+...
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 4799999999999999999999999999999999987 5678889999999999999999999999997643
No 50
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.56 E-value=5.5e-15 Score=112.71 Aligned_cols=54 Identities=67% Similarity=0.987 Sum_probs=51.4
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHhhcc
Q 010330 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSD 98 (513)
Q Consensus 45 d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~-~~a~~~f~~i~~AyevL~d 98 (513)
|||++|||+++++.++||++||+|+++||||+++. +.+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999976 6789999999999999986
No 51
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.4e-15 Score=152.93 Aligned_cols=94 Identities=39% Similarity=0.640 Sum_probs=78.3
Q ss_pred ccccccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHhhccchhhhhcccccccCCC
Q 010330 37 GMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (513)
Q Consensus 37 ~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~--~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~ 114 (513)
.+.++..+|||.|||+.++|+..|||+|||++|+.||||+|.. .+++.+|+++-+||.+|+||.+|..||.-- . +.
T Consensus 366 aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~-d-le 443 (486)
T KOG0550|consen 366 ALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ-D-LE 443 (486)
T ss_pred HHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc-c-hh
Confidence 4456778999999999999999999999999999999999863 578999999999999999999999999722 1 11
Q ss_pred ccccCCCCCCCCCCcccccccc
Q 010330 115 GEYDGLSNTSQGVDPFELYSAF 136 (513)
Q Consensus 115 ~~~~~~~~~~~g~d~~dlF~~f 136 (513)
.. +.++.++||+++|..|
T Consensus 444 ~~----~~~~a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 444 EV----GSGGAGFDPFNIFRAF 461 (486)
T ss_pred hh----cCCCcCcChhhhhhhc
Confidence 11 1122578999999888
No 52
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=3.5e-13 Score=141.92 Aligned_cols=67 Identities=27% Similarity=0.508 Sum_probs=55.3
Q ss_pred CCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEE
Q 010330 255 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (513)
Q Consensus 255 ~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~ 321 (513)
++...++. ...++|.||+|+++|++++|+|+|++...++.+|||||+|+|..|+.+.+++.+|+.++
T Consensus 278 G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 278 GGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred CCeEEEecCCCcEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 44444433 34689999999999999999999998655556899999999999999999998887654
No 53
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.46 E-value=7.1e-14 Score=111.49 Aligned_cols=65 Identities=48% Similarity=0.999 Sum_probs=55.3
Q ss_pred ccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEE-eeeeeecCCce
Q 010330 194 CDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII-IDHCRRCGGNG 258 (513)
Q Consensus 194 C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i-~~~C~~C~G~G 258 (513)
|+.|+|+|++++..+.+|+.|+|+|+++..++++++++++..+|+.|+|+|++| .++|+.|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 899999999999999999999999999999998999999999999999999999 99999999975
No 54
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1e-13 Score=143.48 Aligned_cols=119 Identities=30% Similarity=0.659 Sum_probs=93.0
Q ss_pred eeeeccCCCCCCccccc-------ccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeee------------
Q 010330 190 CFETCDSCGGTGAKSSN-------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH------------ 250 (513)
Q Consensus 190 r~~~C~~C~GtG~~~~~-------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~------------ 250 (513)
...+|++|+|+|..... ...+|+.|+|+|.++. .+|+.|+|.|.+....
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~------------~pC~~C~G~G~v~~~~~i~V~IPaGv~~ 225 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK------------DPCGKCKGKGRVKKKKSISVNIPAGVDD 225 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC------------CCCCCCCCCCeEeeeeEEEEECCCCCcc
Confidence 56799999999975432 3579999999999864 5799999999965431
Q ss_pred ------------------------------------------ee--------ecCCceEEee-eeEEEEEcCCCCcCCCE
Q 010330 251 ------------------------------------------CR--------RCGGNGEVQS-KRSMKVVIPPGVSNGAT 279 (513)
Q Consensus 251 ------------------------------------------C~--------~C~G~G~v~~-~k~l~V~IP~Gv~~G~~ 279 (513)
|. .+++.-.|++ ...++|+||+|++.|++
T Consensus 226 g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~ 305 (371)
T COG0484 226 GDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEV 305 (371)
T ss_pred CCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcE
Confidence 11 1255555554 34599999999999999
Q ss_pred EEEccccccCCCCCCCccEEEEEEEeeccccccccccceEE
Q 010330 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (513)
Q Consensus 280 Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~ 320 (513)
++|+|+|++..++...|||||+|+|.-+..+......|+.+
T Consensus 306 ~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~ 346 (371)
T COG0484 306 FRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEE 346 (371)
T ss_pred EEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 99999999987777789999999999999877665555543
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=7.4e-14 Score=135.38 Aligned_cols=67 Identities=40% Similarity=0.718 Sum_probs=63.7
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccc
Q 010330 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 108 (513)
Q Consensus 42 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~ 108 (513)
...|.|++|||+++|+..||++|||+||++||||+++++++.+.|..|..|||+|.|.+.|+.||-+
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 3479999999999999999999999999999999999988999999999999999999999999963
No 56
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=1e-12 Score=138.23 Aligned_cols=67 Identities=27% Similarity=0.476 Sum_probs=55.9
Q ss_pred CCceEEee--eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEE
Q 010330 255 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (513)
Q Consensus 255 ~G~G~v~~--~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~ 321 (513)
++...++. .+.++|.||+|+++|++++|+|+|++...++.+|||||+|+|..|+.|.+++.+|+.++
T Consensus 292 G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 292 GTTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred CCEEEEeCCCCcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 44555554 35799999999999999999999998644456899999999999999999999887653
No 57
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.36 E-value=9.1e-13 Score=124.31 Aligned_cols=64 Identities=27% Similarity=0.444 Sum_probs=56.9
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHHhhccchhhhhccc
Q 010330 44 TDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR 107 (513)
Q Consensus 44 ~d~Y~iLgv~~~--as~~eIk~ayr~la~k~HPD~n~~~------~a~~~f~~i~~AyevL~d~~kR~~YD~ 107 (513)
.|||++|||++. ++..+|+++||+|+++||||+.... .+.+.|..|++||++|+||.+|+.|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 489999999996 7889999999999999999997532 156689999999999999999999984
No 58
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.34 E-value=9.7e-13 Score=123.48 Aligned_cols=64 Identities=30% Similarity=0.450 Sum_probs=56.5
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHhhccchhhhhccc
Q 010330 44 TDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSP----GAEEKFKEISSAYEVLSDDEKRSVYDR 107 (513)
Q Consensus 44 ~d~Y~iLgv~~~--as~~eIk~ayr~la~k~HPD~n~~~----~a~~~f~~i~~AyevL~d~~kR~~YD~ 107 (513)
.|||++|||++. ++..+|+++||+|+++||||++... .+.+.+..|++||++|+||.+|+.|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 599999999997 7899999999999999999998642 133457899999999999999999975
No 59
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6e-13 Score=138.63 Aligned_cols=65 Identities=42% Similarity=0.600 Sum_probs=63.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhccc
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDR 107 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~ 107 (513)
.+|.|.+|||+.++|+++|||.|||+|+..|||+|..+.|+|.|+.++.|||+|+|+++|+.||+
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~ 298 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDL 298 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999997
No 60
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=2.4e-12 Score=135.37 Aligned_cols=120 Identities=26% Similarity=0.605 Sum_probs=91.2
Q ss_pred eeeeccCCCCCCccccc---------ccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeee----------
Q 010330 190 CFETCDSCGGTGAKSSN---------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH---------- 250 (513)
Q Consensus 190 r~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~---------- 250 (513)
....|+.|+|+|..... ...+|+.|+|.|.++. ..|+.|+|.|.+....
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 231 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTVVVNEDISVKIPKGA 231 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeEEEeeEEEEEECCCC
Confidence 34679999999864221 2367999999997643 5699998888764420
Q ss_pred --------------------------------------------------eeecCCceEEee-eeEEEEEcCCCCcCCCE
Q 010330 251 --------------------------------------------------CRRCGGNGEVQS-KRSMKVVIPPGVSNGAT 279 (513)
Q Consensus 251 --------------------------------------------------C~~C~G~G~v~~-~k~l~V~IP~Gv~~G~~ 279 (513)
-..|++...++. ...++|.||+|+++|++
T Consensus 232 ~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~ 311 (365)
T PRK14290 232 TDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEV 311 (365)
T ss_pred CCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcE
Confidence 012355555554 35799999999999999
Q ss_pred EEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEE
Q 010330 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (513)
Q Consensus 280 Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~ 321 (513)
++|+|+|++...+..+|||||+|+|..|+.|++++.+|+.++
T Consensus 312 iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 312 LKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999998655556899999999999999999999888664
No 61
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=2.7e-12 Score=135.35 Aligned_cols=67 Identities=19% Similarity=0.332 Sum_probs=55.4
Q ss_pred CCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEE
Q 010330 255 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (513)
Q Consensus 255 ~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~ 321 (513)
++...++. ...++|.||+|+++|++++|+|+|++...+...|||||+|+|..|+.+++++.+|+.++
T Consensus 281 G~~~~i~tldG~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 281 GADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CCeEEEecCCCCEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 55555544 34589999999999999999999998655556899999999999999999888877654
No 62
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=3.2e-12 Score=134.44 Aligned_cols=68 Identities=21% Similarity=0.375 Sum_probs=55.9
Q ss_pred CCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEEEe
Q 010330 255 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 322 (513)
Q Consensus 255 ~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~~~ 322 (513)
++...+.. ...++|.||+|+++|++++|+|+|++...+..+|||||+|+|..|+.|.++..+|+..+.
T Consensus 280 G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 280 GAQIEVPTLEGERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred CCeEEEECCCCcEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 55555554 345799999999999999999999986555568999999999999999998888776543
No 63
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.31 E-value=3.2e-12 Score=120.65 Aligned_cols=66 Identities=26% Similarity=0.411 Sum_probs=58.7
Q ss_pred cccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHHhhccchhhhhccc
Q 010330 42 AGTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR 107 (513)
Q Consensus 42 ~~~d~Y~iLgv~~~--as~~eIk~ayr~la~k~HPD~n~~~------~a~~~f~~i~~AyevL~d~~kR~~YD~ 107 (513)
...|||++|||++. .+..+|+++||+|+++||||++... .+.+.|..|++||++|+||.+|+.|+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 45799999999998 6789999999999999999997642 256789999999999999999999995
No 64
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=5e-12 Score=132.90 Aligned_cols=66 Identities=20% Similarity=0.427 Sum_probs=54.1
Q ss_pred CCceEEee--eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEE
Q 010330 255 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (513)
Q Consensus 255 ~G~G~v~~--~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~ 320 (513)
++.-.+.. .+.++|.||+|+++|++++|+|+|++...+...|||||+|+|..|+.|.+++..|+.+
T Consensus 282 G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 349 (365)
T PRK14285 282 GKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN 349 (365)
T ss_pred CCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 55555554 3579999999999999999999999865444579999999999999999888766544
No 65
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.29 E-value=3.9e-12 Score=120.46 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=56.6
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC-cch-----HHHHHHHHHHHHhhccchhhhhccc
Q 010330 43 GTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKS-PGA-----EEKFKEISSAYEVLSDDEKRSVYDR 107 (513)
Q Consensus 43 ~~d~Y~iLgv~~~--as~~eIk~ayr~la~k~HPD~n~~-~~a-----~~~f~~i~~AyevL~d~~kR~~YD~ 107 (513)
..|||++|||++. ++..+|+++||+|++++|||+++. +.+ .+.+..||+||++|+||.+|+.|+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 4799999999996 689999999999999999999863 332 3346899999999999999999994
No 66
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.25 E-value=5.2e-12 Score=110.87 Aligned_cols=52 Identities=23% Similarity=0.410 Sum_probs=48.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhc
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLS 97 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~ 97 (513)
..++|++|||+++||.+|||+|||+|++++|||++ ++.+.|++|++|||+|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 37999999999999999999999999999999985 46688999999999985
No 67
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=1.1e-11 Score=130.76 Aligned_cols=66 Identities=26% Similarity=0.403 Sum_probs=52.5
Q ss_pred CCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEE
Q 010330 255 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (513)
Q Consensus 255 ~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~ 320 (513)
++...++. ...++|.||+|+++|++++|+|+|++...+..+|||||+|+|..|+.+..+..+++..
T Consensus 280 G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~ 346 (373)
T PRK14301 280 GDRIEVPTLDDPVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE 346 (373)
T ss_pred CCeEEEecCCccEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 55555544 3459999999999999999999999865555689999999999998877666555443
No 68
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=1.6e-11 Score=129.52 Aligned_cols=63 Identities=27% Similarity=0.555 Sum_probs=50.2
Q ss_pred CCceEEee--eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccc
Q 010330 255 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL 317 (513)
Q Consensus 255 ~G~G~v~~--~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL 317 (513)
++...++. .+.++|.||+|+++|++++|+|+|++...+..+|||||+|+|..|..+.-+...|
T Consensus 281 G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~ 345 (372)
T PRK14300 281 GGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQREL 345 (372)
T ss_pred CCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 45555555 3589999999999999999999999865556789999999999998765444333
No 69
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.4e-11 Score=130.74 Aligned_cols=66 Identities=24% Similarity=0.497 Sum_probs=53.4
Q ss_pred CCceEEee-e--eEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEE
Q 010330 255 GGNGEVQS-K--RSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (513)
Q Consensus 255 ~G~G~v~~-~--k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~ 320 (513)
++...++. . ..++|.||+|+++|++++|+|+|++...+..+|||||+|+|..|+.+..+..+|+..
T Consensus 294 G~~~~v~tld~g~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 362 (391)
T PRK14284 294 GMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQ 362 (391)
T ss_pred CCeEEEeecCCCcEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence 55555653 2 689999999999999999999999865555689999999999998887766665543
No 70
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.3e-11 Score=130.15 Aligned_cols=66 Identities=24% Similarity=0.420 Sum_probs=53.1
Q ss_pred CCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccceEE
Q 010330 255 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (513)
Q Consensus 255 ~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~~~ 320 (513)
++...+.. ...++|.||+|+++|++++|+|+|++...++..|||||+|+|..|+.+.++...|+.+
T Consensus 278 G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 344 (371)
T PRK14287 278 GDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMRE 344 (371)
T ss_pred CCEEEEEcCCCCEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 55555554 3458999999999999999999999865555689999999999999888776655544
No 71
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=2.5e-11 Score=128.18 Aligned_cols=60 Identities=25% Similarity=0.448 Sum_probs=48.4
Q ss_pred CCceEEee--eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeecccccccc
Q 010330 255 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDG 314 (513)
Q Consensus 255 ~G~G~v~~--~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G 314 (513)
++...++. ...++|.||+|+++|++++|+|+|++...++..|||||+|+|.-+..+..+.
T Consensus 279 G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~q 340 (378)
T PRK14278 279 GTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHED 340 (378)
T ss_pred CCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHH
Confidence 55555654 4689999999999999999999999865555689999999999777554433
No 72
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.22 E-value=1.4e-11 Score=129.08 Aligned_cols=64 Identities=28% Similarity=0.555 Sum_probs=51.1
Q ss_pred CCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccce
Q 010330 255 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLF 318 (513)
Q Consensus 255 ~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~ 318 (513)
++...++. ...++|.||+|+++|++++|+|+|++...+..+|||||+|+|..|+.+.++..+++
T Consensus 283 G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l 347 (354)
T TIGR02349 283 GGEIEVPTLDGDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL 347 (354)
T ss_pred CCeEEEecCCceEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 34444433 34689999999999999999999998655557899999999999998887766554
No 73
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=2.3e-11 Score=128.57 Aligned_cols=61 Identities=23% Similarity=0.409 Sum_probs=48.2
Q ss_pred CCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccc
Q 010330 255 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL 315 (513)
Q Consensus 255 ~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~ 315 (513)
++...++. ...++|.||+|+++|++++|+|+|++...+..+|||||+|+|..+..+..+..
T Consensus 286 G~~~~v~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~ 347 (380)
T PRK14276 286 GDTVEVPTVHGDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQK 347 (380)
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHH
Confidence 55555554 34589999999999999999999998655556899999999998876554443
No 74
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=3.1e-11 Score=127.08 Aligned_cols=116 Identities=29% Similarity=0.547 Sum_probs=85.9
Q ss_pred eeeeccCCCCCCcccc-----cccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeee--------------
Q 010330 190 CFETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH-------------- 250 (513)
Q Consensus 190 r~~~C~~C~GtG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~-------------- 250 (513)
....|+.|+|+|.... ....+|+.|+|+|.++. ..|+.|+|.|.+....
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~ 222 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TPCQACKGKTYILKDEEIDAIIPEGIDDQN 222 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------ccCccCCCcceEEEEEEEEEecCCCCCCCC
Confidence 4568999999996421 13458999999998753 4699999998764420
Q ss_pred -----------------------------------------------eeecCCceEEee--eeEEEEEcCCCCcCCCEEE
Q 010330 251 -----------------------------------------------CRRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ 281 (513)
Q Consensus 251 -----------------------------------------------C~~C~G~G~v~~--~k~l~V~IP~Gv~~G~~Ir 281 (513)
-..|++.-.++. .+.++|.||+|+++|++++
T Consensus 223 ~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~ 302 (369)
T PRK14288 223 RMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFA 302 (369)
T ss_pred EEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence 112355555554 3468999999999999999
Q ss_pred EccccccCCCCCCCccEEEEEEEeeccccccccccc
Q 010330 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL 317 (513)
Q Consensus 282 l~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL 317 (513)
|+|+|++...+...|||||+|+|..|+.+..+...+
T Consensus 303 i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~ 338 (369)
T PRK14288 303 FRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQEL 338 (369)
T ss_pred EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 999999864434569999999999998876555443
No 75
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=3.5e-11 Score=127.87 Aligned_cols=113 Identities=29% Similarity=0.502 Sum_probs=82.7
Q ss_pred eeeeccCCCCCCccccc---------ccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeee----------
Q 010330 190 CFETCDSCGGTGAKSSN---------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH---------- 250 (513)
Q Consensus 190 r~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~---------- 250 (513)
....|+.|+|+|..... ...+|+.|+|+|.++. ..|+.|+|.|.+....
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 245 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------------DRCPACYGEGIKQGEVTVKVTVPAGV 245 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------------CCCCCCCCCccEecceEEEEecCCCC
Confidence 34679999999865321 2457999999998753 4699999988764320
Q ss_pred ----------------------------------------------------eeecCCceEEee-eeEEEEEcCCCCcCC
Q 010330 251 ----------------------------------------------------CRRCGGNGEVQS-KRSMKVVIPPGVSNG 277 (513)
Q Consensus 251 ----------------------------------------------------C~~C~G~G~v~~-~k~l~V~IP~Gv~~G 277 (513)
-..|++...+.. ...++|.||+|+++|
T Consensus 246 ~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G 325 (397)
T PRK14281 246 QDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPE 325 (397)
T ss_pred CCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCC
Confidence 012255555554 345899999999999
Q ss_pred CEEEEccccccCCCCCCCccEEEEEEEeecccccccc
Q 010330 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDG 314 (513)
Q Consensus 278 ~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G 314 (513)
++++|+|+|++...+...|||||+|+|.-+..+..+.
T Consensus 326 ~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~q 362 (397)
T PRK14281 326 TMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQD 362 (397)
T ss_pred cEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHH
Confidence 9999999999865555689999999999877654433
No 76
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=4.2e-11 Score=127.03 Aligned_cols=112 Identities=27% Similarity=0.575 Sum_probs=81.9
Q ss_pred eeeeccCCCCCCccccc-----ccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeee--------------
Q 010330 190 CFETCDSCGGTGAKSSN-----CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH-------------- 250 (513)
Q Consensus 190 r~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~-------------- 250 (513)
....|+.|+|+|..... ...+|+.|+|+|.++. ..|+.|+|.|.+....
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 256 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------DPCEECKGTGVTTRTRTINVRIPPGVEDGQ 256 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------CcCCCCCCCeEEEEeeeeEEEeCCCCCCCc
Confidence 34679999999875321 3468999999998753 4699999988764320
Q ss_pred ------------------------------------------------eeecCCceEEee-eeEEEEEcCCCCcCCCEEE
Q 010330 251 ------------------------------------------------CRRCGGNGEVQS-KRSMKVVIPPGVSNGATMQ 281 (513)
Q Consensus 251 ------------------------------------------------C~~C~G~G~v~~-~k~l~V~IP~Gv~~G~~Ir 281 (513)
-..|++...++. ...++|+||+|+++|++|+
T Consensus 257 ~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~ir 336 (392)
T PRK14279 257 RIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILR 336 (392)
T ss_pred EEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEE
Confidence 001244444443 3458999999999999999
Q ss_pred EccccccCCCCCCCccEEEEEEEeecccccccc
Q 010330 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDG 314 (513)
Q Consensus 282 l~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G 314 (513)
|+|+|++. .++.+|||||+|+|.-+..+..+.
T Consensus 337 i~g~G~p~-~~~~~GDL~I~~~v~~P~~Ls~~q 368 (392)
T PRK14279 337 VRGRGVPK-RSGGAGDLLVTVKVAVPPNLDGAA 368 (392)
T ss_pred ECCCCCCC-CCCCCCCEEEEEEEECCCCCCHHH
Confidence 99999985 345689999999999887654443
No 77
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=4.3e-11 Score=126.13 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=49.9
Q ss_pred CCceEEee--eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccce
Q 010330 255 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLF 318 (513)
Q Consensus 255 ~G~G~v~~--~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~ 318 (513)
++...++. .+.++|.||+|+++|++++|+|+|++...+...|||||+|+|.-+..+..+..+|+
T Consensus 286 G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 351 (372)
T PRK14286 286 GAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELI 351 (372)
T ss_pred CCEEEEeCCCCCEEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence 44545544 45799999999999999999999998655556799999999998887665554443
No 78
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=4.8e-11 Score=126.02 Aligned_cols=61 Identities=25% Similarity=0.411 Sum_probs=47.6
Q ss_pred CCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccc
Q 010330 255 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL 315 (513)
Q Consensus 255 ~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~ 315 (513)
++...+.. ...++|.||+|+++|++++|+|+|++...+...|||||+|+|..+..+..+..
T Consensus 283 G~~~~i~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~ 344 (376)
T PRK14280 283 GDEIEVPTLHGKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQK 344 (376)
T ss_pred CCEEEEecCCceEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH
Confidence 55555553 34589999999999999999999998654556899999999998876554433
No 79
>PHA02624 large T antigen; Provisional
Probab=99.17 E-value=1.8e-11 Score=133.58 Aligned_cols=61 Identities=28% Similarity=0.500 Sum_probs=57.1
Q ss_pred ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcc
Q 010330 43 GTDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYD 106 (513)
Q Consensus 43 ~~d~Y~iLgv~~~a--s~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD 106 (513)
..++|++|||+++| +.+|||+|||++|++||||++ +++++|++|++||++|+|+.+|+.|+
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhcc
Confidence 46999999999999 999999999999999999997 45789999999999999999999993
No 80
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.16 E-value=2.2e-11 Score=122.79 Aligned_cols=58 Identities=40% Similarity=0.527 Sum_probs=51.6
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHHhhccc
Q 010330 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--------PGAEEKFKEISSAYEVLSDD 99 (513)
Q Consensus 42 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~--------~~a~~~f~~i~~AyevL~d~ 99 (513)
...|+|++|||+++||.+|||+|||+|+++||||++.. +.++++|++|++||++|+..
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34799999999999999999999999999999999642 34789999999999999853
No 81
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=5.3e-11 Score=125.58 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=55.0
Q ss_pred cCCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCCCC-CCCccEEEEEEEeeccccccccccceEEE
Q 010330 254 CGGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRR-SLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (513)
Q Consensus 254 C~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~g-g~~GDL~V~I~v~~h~~F~R~G~DL~~~~ 321 (513)
|++.-.++. ...++|.||+|+++|++++|+|+|.+...+ +..|||||+|+|..|+.+.+++.+|+.++
T Consensus 282 ~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 282 LGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred CCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 356655654 335899999999999999999999985433 35799999999999999999888877554
No 82
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=6.8e-11 Score=125.03 Aligned_cols=60 Identities=20% Similarity=0.385 Sum_probs=47.6
Q ss_pred CCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeecccccccc
Q 010330 255 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDG 314 (513)
Q Consensus 255 ~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G 314 (513)
++...++. ...++|.||+|+++|++++|+|+|.+...++..|||||+|+|.-+..+..+.
T Consensus 288 G~~~~i~~ldg~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q 348 (380)
T PRK14297 288 GTEIKVPTVDGEVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQ 348 (380)
T ss_pred CCcEEEEcCCCcEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHH
Confidence 45555554 3458999999999999999999999865555689999999999887654443
No 83
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=9.2e-11 Score=124.27 Aligned_cols=61 Identities=25% Similarity=0.439 Sum_probs=47.0
Q ss_pred CCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccc
Q 010330 255 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL 315 (513)
Q Consensus 255 ~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~ 315 (513)
++...++. ...++|.||+|+++|++++|+|+|.+...+...|||||+|+|.-+..+..+..
T Consensus 295 G~~~~i~tldG~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk 356 (386)
T PRK14277 295 GGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQK 356 (386)
T ss_pred CCEEEEEcCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHH
Confidence 45555544 33489999999999999999999998654456799999999997776544443
No 84
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=1.1e-10 Score=123.02 Aligned_cols=62 Identities=13% Similarity=0.354 Sum_probs=47.0
Q ss_pred CCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCC-CCCCCccEEEEEEEeecccccccccc
Q 010330 255 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDR-RRSLAGDLFVALHVDEKQGIHRDGLN 316 (513)
Q Consensus 255 ~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~-~gg~~GDL~V~I~v~~h~~F~R~G~D 316 (513)
+++-.++. ...++|.||+|+++|++++|+|+|++.. ..+..|||||+|+|.-+..+..+...
T Consensus 290 G~~~~i~tldG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~ 353 (372)
T PRK14296 290 GNEIIIKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKE 353 (372)
T ss_pred CCEEEeeCCCCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHH
Confidence 55555554 3348999999999999999999999732 23457999999999988765544433
No 85
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=9.2e-11 Score=124.29 Aligned_cols=59 Identities=27% Similarity=0.401 Sum_probs=47.4
Q ss_pred CCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccc
Q 010330 255 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRD 313 (513)
Q Consensus 255 ~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~ 313 (513)
++...+.. ...++|.||+|+++|++++|+|+|.+...++.+|||||+|+|.-+.....+
T Consensus 294 G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~ 353 (386)
T PRK14289 294 GGAVEVPTIDGKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKE 353 (386)
T ss_pred CCeEEeecCCceEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHH
Confidence 55555555 456899999999999999999999986555678999999999977654433
No 86
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=1.3e-10 Score=123.13 Aligned_cols=114 Identities=27% Similarity=0.573 Sum_probs=81.8
Q ss_pred eeeccCCCCCCcccc-----cccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeee---------------
Q 010330 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDH--------------- 250 (513)
Q Consensus 191 ~~~C~~C~GtG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~--------------- 250 (513)
...|+.|+|+|.... ....+|+.|+|+|.++. ..|+.|.|.|.+....
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ 250 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DPCLVCKGSGRAKSSRTMQVRIPAGVSDGQR 250 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cCCCCCCCCceEeeeeEEEEEeCCCCCCCCE
Confidence 467889988886422 13457888888888753 4688888888664320
Q ss_pred -----------------------------------------------eeecCCceEEee--eeEEEEEcCCCCcCCCEEE
Q 010330 251 -----------------------------------------------CRRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ 281 (513)
Q Consensus 251 -----------------------------------------------C~~C~G~G~v~~--~k~l~V~IP~Gv~~G~~Ir 281 (513)
-..|++...++. .+.++|.||+|+++|++|+
T Consensus 251 i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~ir 330 (389)
T PRK14295 251 IRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLR 330 (389)
T ss_pred EEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEE
Confidence 001245555543 3589999999999999999
Q ss_pred EccccccCCCCCCCccEEEEEEEeeccccccccccc
Q 010330 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL 317 (513)
Q Consensus 282 l~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL 317 (513)
|+|+|++. .++.+|||||+|+|.-+.....+...|
T Consensus 331 i~G~G~p~-~~~~~GDL~i~~~v~~P~~Ls~~qk~~ 365 (389)
T PRK14295 331 VRGKGAVR-KDGTRGDLLVTVEVAVPKDLSGKAREA 365 (389)
T ss_pred ECCCCcCC-CCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 99999985 345689999999999887655444333
No 87
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=1.3e-10 Score=122.85 Aligned_cols=62 Identities=24% Similarity=0.432 Sum_probs=47.5
Q ss_pred CCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeecccccccccc
Q 010330 255 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN 316 (513)
Q Consensus 255 ~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~D 316 (513)
++...++. ...++|.||+|+++|++++|+|+|.+...+...|||||+|+|.-+.....+...
T Consensus 286 G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ 348 (378)
T PRK14283 286 GDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKE 348 (378)
T ss_pred CCeEEEEcCCceEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHH
Confidence 44444553 347899999999999999999999986544568999999999977655444333
No 88
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=1.4e-10 Score=122.27 Aligned_cols=64 Identities=20% Similarity=0.380 Sum_probs=50.6
Q ss_pred CCceEEee-eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeeccccccccccce
Q 010330 255 GGNGEVQS-KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLF 318 (513)
Q Consensus 255 ~G~G~v~~-~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~~F~R~G~DL~ 318 (513)
++...+.. ....+|.||+|+++|++++|+|+|++...+..+|||||+|+|..|+.+..+...|+
T Consensus 278 G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll 342 (371)
T PRK14292 278 GGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREAL 342 (371)
T ss_pred CCeEEEECCCCCEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 45555553 33458999999999999999999998655667899999999999988776655544
No 89
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.08 E-value=1.8e-10 Score=122.93 Aligned_cols=58 Identities=26% Similarity=0.293 Sum_probs=45.7
Q ss_pred cCCceEEee--eeEEEEEcCCC--CcCCCEEEEccccccCCCC-CCCccEEEEEEEeec--cccc
Q 010330 254 CGGNGEVQS--KRSMKVVIPPG--VSNGATMQIRGEGNFDRRR-SLAGDLFVALHVDEK--QGIH 311 (513)
Q Consensus 254 C~G~G~v~~--~k~l~V~IP~G--v~~G~~Irl~G~G~~~~~g-g~~GDL~V~I~v~~h--~~F~ 311 (513)
|++.-.+.. .+.++|.||+| +++|++++|+|+|++...+ ...|||||+|+|.-+ ..+.
T Consensus 289 lG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls 353 (421)
T PTZ00037 289 TGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFT 353 (421)
T ss_pred cCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCC
Confidence 466666654 35699999999 9999999999999985433 357999999999977 5443
No 90
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=7.6e-10 Score=117.16 Aligned_cols=54 Identities=35% Similarity=0.536 Sum_probs=44.3
Q ss_pred CCceEEee--eeEEEEEcCCCCcCCCEEEEccccccCCCCCCCccEEEEEEEeecc
Q 010330 255 GGNGEVQS--KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ 308 (513)
Q Consensus 255 ~G~G~v~~--~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~ 308 (513)
++...++. .+.++|.||+|+++|++|+|+|+|++...+..+|||||+|+|.-+.
T Consensus 291 G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 291 GTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred CCEEEEecCCCCEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 44555544 3579999999999999999999999865555689999999999775
No 91
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.03 E-value=1.5e-10 Score=120.23 Aligned_cols=72 Identities=36% Similarity=0.644 Sum_probs=65.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHHhhccchhhhhcccccccCCC
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS------PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~------~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~ 114 (513)
--|+|+|||++.+++..|||++||+|.+|||||+-+. .+.++++++|++||+.|+|+..|+.|=.||.....
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 4699999999999999999999999999999998653 35789999999999999999999999999975443
No 92
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.82 E-value=5.1e-09 Score=97.60 Aligned_cols=52 Identities=31% Similarity=0.450 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHHhhccchhhhhccc
Q 010330 56 ATLQEIKTSYRKLARKYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR 107 (513)
Q Consensus 56 as~~eIk~ayr~la~k~HPD~n~~~------~a~~~f~~i~~AyevL~d~~kR~~YD~ 107 (513)
.+..+|+++||+|+++||||+.+.. .+.+.|..|++||++|+||.+|+.|+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 4788999999999999999985432 266789999999999999999999996
No 93
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.78 E-value=1.8e-08 Score=103.02 Aligned_cols=71 Identities=30% Similarity=0.459 Sum_probs=63.4
Q ss_pred cccccccceEEEecCHHHHhcCCeeEEeccCCc-EEEEeCCCCCCCCEEEEccCCCCCCCCCCCCCcEEEEEEEEcCCCC
Q 010330 310 IHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDI 388 (513)
Q Consensus 310 F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~-~~l~Ip~g~qpG~~~~l~g~G~P~~~~~~~rGDL~V~f~V~~P~~l 388 (513)
+.|.|.||++++.|||.||++|+++.| +++|. ++|+||+|+++|++++++|+|++. |||||+|+|.-+..+
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~~f 196 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG-------GDLYLVVRLLPHPVF 196 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC-------CCEEEEEEEcCCCCe
Confidence 357899999999999999999999998 78884 789999999999999999999862 999999999866543
No 94
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.76 E-value=1.2e-08 Score=96.46 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=55.1
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHhhccchhhhhcc
Q 010330 44 TDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYD 106 (513)
Q Consensus 44 ~d~Y~iLgv~~~--as~~eIk~ayr~la~k~HPD~n~~~~------a~~~f~~i~~AyevL~d~~kR~~YD 106 (513)
.|||++||+++. .+..+++++|++|.+++|||+..... +.+.-..||+||.+|+||.+|+.|=
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL 72 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI 72 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 599999999988 89999999999999999999865332 3445678999999999999999994
No 95
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.70 E-value=2.7e-08 Score=86.99 Aligned_cols=61 Identities=36% Similarity=0.760 Sum_probs=50.1
Q ss_pred eeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEee
Q 010330 190 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQS 262 (513)
Q Consensus 190 r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~ 262 (513)
..+.|..|+|+|.. +|+.|+|+|.+...+ .+.+++..+|+.|+|+|+. .|..|.|.|++..
T Consensus 40 ~~v~C~~C~GsG~~------~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~ 100 (111)
T PLN03165 40 NTQPCFPCSGTGAQ------VCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR 100 (111)
T ss_pred cCCCCCCCCCCCCc------CCCCCcCcCeEEEEe---CCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence 45789999999983 899999999987543 2346667899999999985 4999999998764
No 96
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.62 E-value=2.5e-08 Score=82.65 Aligned_cols=48 Identities=29% Similarity=0.608 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCcCCCEEEEccccccCCCCC-CCccEEEEEEEeeccccc
Q 010330 264 RSMKVVIPPGVSNGATMQIRGEGNFDRRRS-LAGDLFVALHVDEKQGIH 311 (513)
Q Consensus 264 k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg-~~GDL~V~I~v~~h~~F~ 311 (513)
+.++|.||+|+++|++++++|+|.+...+. ..|||||+++|.-+..+.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls 75 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLS 75 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTS
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCC
Confidence 567899999999999999999999765554 799999999999776654
No 97
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4e-08 Score=92.86 Aligned_cols=63 Identities=30% Similarity=0.499 Sum_probs=57.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHhhccchhhhhc
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVY 105 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~--~~a~~~f~~i~~AyevL~d~~kR~~Y 105 (513)
+-|+|+||.|.++.+.++||+.||+|++..|||+|++ +.|...|.-+..||.+|-|+..|..-
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4699999999999999999999999999999999996 57889999999999999999866543
No 98
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.55 E-value=2.2e-07 Score=95.62 Aligned_cols=74 Identities=22% Similarity=0.464 Sum_probs=61.4
Q ss_pred cccccceEEEecCHHHHhcCCeeEE----eccC--C--------cEEEEeCCCCCCCCEEEEccCCCCCCCCCCCCCcEE
Q 010330 312 RDGLNLFSKISVDYTEAILGTSMEV----ETVE--G--------MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHL 377 (513)
Q Consensus 312 R~G~DL~~~~~Isl~eAllG~~v~V----~tld--G--------~~~l~Ip~g~qpG~~~~l~g~G~P~~~~~~~rGDL~ 377 (513)
+.|.||++.+.|+|.||+.|+...| ++++ | .++|.||+|+++|++++++|+|+|..++ ..+||||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~ 193 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENG-GPNGDLW 193 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCC-CCCccEE
Confidence 4688999999999999999995544 5554 3 3578899999999999999999996543 4689999
Q ss_pred EEEEEEcCCC
Q 010330 378 FIVNVLIPKD 387 (513)
Q Consensus 378 V~f~V~~P~~ 387 (513)
|+|+|. |..
T Consensus 194 v~i~v~-ph~ 202 (306)
T PRK10266 194 LVIHIA-PHP 202 (306)
T ss_pred EEEEEc-CCC
Confidence 999999 755
No 99
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.1e-07 Score=93.57 Aligned_cols=66 Identities=36% Similarity=0.494 Sum_probs=58.8
Q ss_pred cCcccccccCCC---CCHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHHhhccchhhhhccccc
Q 010330 44 TDYYSTLNVRQN---ATLQEIKTSYRKLARKYHPDINK---SPGAEEKFKEISSAYEVLSDDEKRSVYDRFG 109 (513)
Q Consensus 44 ~d~Y~iLgv~~~---as~~eIk~ayr~la~k~HPD~n~---~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G 109 (513)
.|+|.+|||+.- |++..|.+|.++...+||||+.. +.+..+.|+.|+.||+||+|+.+|.+||.--
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 599999999864 89999999999999999999863 2456789999999999999999999999743
No 100
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.6e-07 Score=87.42 Aligned_cols=55 Identities=25% Similarity=0.567 Sum_probs=51.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHH-hhcc
Q 010330 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYE-VLSD 98 (513)
Q Consensus 44 ~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~Aye-vL~d 98 (513)
+.||++|||..+|+++|++.||.+||+++|||...+....+.|.+|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999988888899999999999 7764
No 101
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.1e-06 Score=90.45 Aligned_cols=55 Identities=31% Similarity=0.493 Sum_probs=45.5
Q ss_pred ecCCceEEee--eeEEEEEcCCC--CcCCCEEEEccccccCCCCCCCccEEEEEEEeecc
Q 010330 253 RCGGNGEVQS--KRSMKVVIPPG--VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ 308 (513)
Q Consensus 253 ~C~G~G~v~~--~k~l~V~IP~G--v~~G~~Irl~G~G~~~~~gg~~GDL~V~I~v~~h~ 308 (513)
.|++...+.+ .+.+++.++|| +.+|++.+++|+|++-.... .|||||.+.|+-++
T Consensus 266 l~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 266 LCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK 324 (337)
T ss_pred cccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence 4555555543 58999999999 99999999999999965554 99999999999776
No 102
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.4e-06 Score=98.31 Aligned_cols=56 Identities=36% Similarity=0.494 Sum_probs=47.8
Q ss_pred cccccCcccccccCCC----CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhc
Q 010330 40 RAAGTDYYSTLNVRQN----ATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLS 97 (513)
Q Consensus 40 ~~~~~d~Y~iLgv~~~----as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~ 97 (513)
++..-+-|+||.|+-+ -..+.||++|+|||.+||||+|| +..++|..+++|||.|+
T Consensus 1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLS 1336 (2235)
T ss_pred ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHH
Confidence 3445688999999754 24478999999999999999994 67899999999999998
No 103
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.06 E-value=3.2e-06 Score=80.55 Aligned_cols=49 Identities=27% Similarity=0.609 Sum_probs=43.9
Q ss_pred eecCCCCCCCcEEEe--eeeeecCCceEEeeeeEEEEEcCCCCcCCCEEEEc
Q 010330 234 VSTCSKCGGDGKIII--DHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR 283 (513)
Q Consensus 234 ~~~C~~C~G~G~~i~--~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl~ 283 (513)
..+|+.|+|+|+++. ++|+.|+|+|++..++.+.+.+ .|+.+|++|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 467999999999887 5799999999999999999999 999999999875
No 104
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.75 E-value=1.8e-05 Score=85.49 Aligned_cols=70 Identities=33% Similarity=0.782 Sum_probs=44.1
Q ss_pred eeccCCCCCCcccccccccCcccCcccEEEEEe--------ecCCcceee-eecCCCCCCCcEE-EeeeeeecCCceEEe
Q 010330 192 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQ--------RTPFGLISQ-VSTCSKCGGDGKI-IIDHCRRCGGNGEVQ 261 (513)
Q Consensus 192 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~--------~~~~g~~~~-~~~C~~C~G~G~~-i~~~C~~C~G~G~v~ 261 (513)
..|+.|+|+|.... ....|+.|+|+|..-... +..+-++.. ..+|+.|.|+|++ +...|+.|+|+|.+.
T Consensus 3 ~~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~ 81 (715)
T COG1107 3 KKCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL 81 (715)
T ss_pred ccccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence 46888888887643 346788888888762110 001111222 3578888888876 456688888887665
Q ss_pred e
Q 010330 262 S 262 (513)
Q Consensus 262 ~ 262 (513)
.
T Consensus 82 ~ 82 (715)
T COG1107 82 T 82 (715)
T ss_pred e
Confidence 3
No 105
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=8.5e-05 Score=63.86 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=46.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccch
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDE 100 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~ 100 (513)
.+.--.||||+++++.+.||+|+|++....|||+...| -.-.+|+||+++|....
T Consensus 55 r~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP---YlAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 55 RREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP---YLASKINEAKDLLEGTS 109 (112)
T ss_pred hHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH---HHHHHHHHHHHHHhccc
Confidence 35666799999999999999999999999999998554 33467999999997543
No 106
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.35 E-value=0.00058 Score=76.72 Aligned_cols=71 Identities=49% Similarity=0.871 Sum_probs=67.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcccccccCCC
Q 010330 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (513)
Q Consensus 44 ~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~g~~ 114 (513)
+|||++|||+++|+.++||+|||+||++||||+++.+.+.++|++|++||++|+||.+|+.||+||.+++.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 69999999999999999999999999999999998878889999999999999999999999999987654
No 107
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.27 E-value=0.00014 Score=58.00 Aligned_cols=43 Identities=33% Similarity=0.845 Sum_probs=30.6
Q ss_pred eeeccCCCCCCccccc---------ccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCc
Q 010330 191 FETCDSCGGTGAKSSN---------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 244 (513)
Q Consensus 191 ~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 244 (513)
...|+.|+|+|..... ...+|+.|+|+|.++ . ...|+.|+|.|
T Consensus 15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~----------~~~C~~C~G~g 66 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E----------KDPCKTCKGSG 66 (66)
T ss_dssp -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T----------SSB-SSSTTSS
T ss_pred CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C----------CCCCCCCCCcC
Confidence 4589999999987432 457899999999986 1 26799999986
No 108
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.00084 Score=72.97 Aligned_cols=47 Identities=38% Similarity=0.825 Sum_probs=36.3
Q ss_pred eeeccCCCCCCccccc------------------ccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEe
Q 010330 191 FETCDSCGGTGAKSSN------------------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 248 (513)
Q Consensus 191 ~~~C~~C~GtG~~~~~------------------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~ 248 (513)
...|+.|+|+|....- .-..|+.|+|+|.+.. ..+|+.|+|+|++..
T Consensus 18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v-----------~~~c~~c~G~gkv~~ 82 (715)
T COG1107 18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV-----------YDTCPECGGTGKVLT 82 (715)
T ss_pred eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE-----------EeecccCCCceeEEe
Confidence 4679999999975321 1347999999998754 268999999999865
No 109
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0027 Score=58.44 Aligned_cols=70 Identities=23% Similarity=0.415 Sum_probs=54.3
Q ss_pred ccccCcccccccC--CCCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHHhhccchhhhhccc--ccc
Q 010330 41 AAGTDYYSTLNVR--QNATLQEIKTSYRKLARKYHPDINKS------PGAEEKFKEISSAYEVLSDDEKRSVYDR--FGE 110 (513)
Q Consensus 41 ~~~~d~Y~iLgv~--~~as~~eIk~ayr~la~k~HPD~n~~------~~a~~~f~~i~~AyevL~d~~kR~~YD~--~G~ 110 (513)
...++||.++|.. ....+.-++.-|--..++.|||+... .-|.+.-.++++||.+|.||.+|+.|=. +|.
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~ 84 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKGQ 84 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 3457999999754 44566667768999999999998431 2366778999999999999999999953 453
No 110
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.35 E-value=0.0029 Score=55.61 Aligned_cols=41 Identities=32% Similarity=0.748 Sum_probs=32.2
Q ss_pred eccCCCCCCcccc------cccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEe
Q 010330 193 TCDSCGGTGAKSS------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 248 (513)
Q Consensus 193 ~C~~C~GtG~~~~------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~ 248 (513)
.|+.|+|+|.... .....|+.|+|+|.. .|+.|.|.|.+.+
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---------------~C~~C~G~G~~~~ 100 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---------------TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---------------eCCCCCCCEEEee
Confidence 7999999987532 125689999999963 3999999998755
No 111
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.012 Score=60.02 Aligned_cols=31 Identities=32% Similarity=0.815 Sum_probs=18.1
Q ss_pred cCCCCCCCcEEEeeeeeecCCceEEeeeeEEEEE
Q 010330 236 TCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVV 269 (513)
Q Consensus 236 ~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~ 269 (513)
.|++|.|.|. .+|.+|.|+|.+.....+.|.
T Consensus 247 ~C~tC~grG~---k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 247 ECHTCKGRGK---KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred cCCcccCCCC---cccccccCccceeeeEEEEEE
Confidence 3555555553 358888888876654444443
No 112
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.59 E-value=0.0093 Score=57.12 Aligned_cols=30 Identities=30% Similarity=0.643 Sum_probs=13.3
Q ss_pred eeeccCCCCCCcccccccccCcccCcccEEE
Q 010330 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVL 221 (513)
Q Consensus 191 ~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~ 221 (513)
...|+.|+|+|...... ..|+.|+|+|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~-~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQ-RECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEecCC-CCCCCCCCccEEe
Confidence 44555555555432111 3455555555443
No 113
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.008 Score=57.01 Aligned_cols=53 Identities=38% Similarity=0.532 Sum_probs=46.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHHhh
Q 010330 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--------PGAEEKFKEISSAYEVL 96 (513)
Q Consensus 44 ~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~--------~~a~~~f~~i~~AyevL 96 (513)
.|.|.+|++...++..+|+++|+++...+|||+-.. ..+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999997321 35788899999999853
No 114
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.027 Score=53.44 Aligned_cols=63 Identities=30% Similarity=0.455 Sum_probs=48.1
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHhhccchhhhhccc
Q 010330 45 DYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDR 107 (513)
Q Consensus 45 d~Y~iLgv~~~a--s~~eIk~ayr~la~k~HPD~n~~~~------a~~~f~~i~~AyevL~d~~kR~~YD~ 107 (513)
||+...|..+.+ ..+.++..|+.+.++||||+..... +-+.+..++.||.+|.||.+|+.|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 345555555543 4566899999999999999976432 33567899999999999999999853
No 115
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.032 Score=56.89 Aligned_cols=59 Identities=31% Similarity=0.659 Sum_probs=38.1
Q ss_pred eeeccCCCCCCccc--ccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCceEEe
Q 010330 191 FETCDSCGGTGAKS--SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQ 261 (513)
Q Consensus 191 ~~~C~~C~GtG~~~--~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~ 261 (513)
..+|+.|+|.|... ...+..|..|-| +.. -...+...|..|+|.|+.. |.+|.|.|.++
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G---~~~------~k~gt~~~C~~C~G~G~~~---C~tC~grG~k~ 258 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTG---VPP------PKIGTHDLCYMCHGRGIKE---CHTCKGRGKKP 258 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccC---CCC------CCCCccchhhhccCCCccc---CCcccCCCCcc
Confidence 46899999998521 234567888877 110 0112335688888888654 77888888765
No 116
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=93.86 E-value=0.052 Score=59.05 Aligned_cols=68 Identities=28% Similarity=0.382 Sum_probs=47.8
Q ss_pred cccccccCcccccccccCCCCCcccccccccccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--------
Q 010330 10 VNLKLHLSTSFSFKWNYCSGNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG-------- 81 (513)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~-------- 81 (513)
.||+.=|+|||.-=|.-|+- +-+.+..=.+.+.|||||||..+..|||+-+..+
T Consensus 372 ~NIRALLSTLh~VLW~es~W------------------qpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~I 433 (453)
T KOG0431|consen 372 GNIRALLSTLHYVLWPESGW------------------QPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYI 433 (453)
T ss_pred ccHHHHHHHHhHhhcCccCc------------------ccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHH
Confidence 58888899998887774442 1123333459999999999999999999976432
Q ss_pred hHHHHHHHHHHHHh
Q 010330 82 AEEKFKEISSAYEV 95 (513)
Q Consensus 82 a~~~f~~i~~Ayev 95 (513)
+++.|..+++|+..
T Consensus 434 aekvfd~l~eawn~ 447 (453)
T KOG0431|consen 434 AEKVFDALSEAWNK 447 (453)
T ss_pred HHHHHHHHHHHHHh
Confidence 45556666666554
No 117
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=90.40 E-value=0.45 Score=42.93 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=39.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchh
Q 010330 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEK 101 (513)
Q Consensus 44 ~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~k 101 (513)
..-..||||++..+.+||.+.|.+|-...+|++. +..-.=.+|..|.|.|..+.+
T Consensus 58 ~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 58 DEARQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp HHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999999976 444444578889988876553
No 118
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=84.99 E-value=1.4 Score=42.64 Aligned_cols=38 Identities=26% Similarity=0.546 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhc
Q 010330 53 RQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLS 97 (513)
Q Consensus 53 ~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~ 97 (513)
+++||.+||.+|+.++..+|- +.++.-.+|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~-------gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA-------GDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHH
Confidence 578999999999999999993 33455678999999644
No 119
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=81.70 E-value=1.6 Score=44.78 Aligned_cols=59 Identities=36% Similarity=0.764 Sum_probs=40.6
Q ss_pred eeEeeeEEEEEeeeeeeccCCCCCCcccc----c-ccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEe
Q 010330 177 ESIFGGQRGIEVSCFETCDSCGGTGAKSS----N-CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 248 (513)
Q Consensus 177 Ea~~G~~k~v~~~r~~~C~~C~GtG~~~~----~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~ 248 (513)
+..+|.. .........|..|.|+|.... . ...+|..|+|.|.+.. ..|..|.|.|.+..
T Consensus 168 ~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~------------~~c~~~~g~~~v~~ 231 (288)
T KOG0715|consen 168 ETCFGSG-AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR------------DNCQACSGAGQVRR 231 (288)
T ss_pred ccccCcC-cccccccccchhhhCcccccccccCCcceeecccccccceecc------------chHHHhhcchhhhh
Confidence 3444444 344566789999999993322 1 1227999999998764 34999999996544
No 120
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=78.17 E-value=1.2 Score=53.31 Aligned_cols=60 Identities=28% Similarity=0.504 Sum_probs=38.6
Q ss_pred eeeEEEEEeeeeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcE---EEeeeeeecCC
Q 010330 180 FGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGK---IIIDHCRRCGG 256 (513)
Q Consensus 180 ~G~~k~v~~~r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~---~i~~~C~~C~G 256 (513)
.++..++++. ...|+.|..... ...|+.|+..-.. ...|+.|+..=. .....|+.|+.
T Consensus 657 ~~G~ieVEV~-~rkCPkCG~~t~-----~~fCP~CGs~te~-------------vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 657 EGGVIEVEVG-RRRCPSCGTETY-----ENRCPDCGTHTEP-------------VYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred cCCeEEEEEE-EEECCCCCCccc-----cccCcccCCcCCC-------------ceeCccCCCccCCCccccccCCCCCC
Confidence 5555666665 578999987543 2489999886321 137999987410 01336999976
Q ss_pred ce
Q 010330 257 NG 258 (513)
Q Consensus 257 ~G 258 (513)
.-
T Consensus 718 pl 719 (1337)
T PRK14714 718 EL 719 (1337)
T ss_pred cc
Confidence 54
No 121
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.45 E-value=2.6 Score=42.70 Aligned_cols=50 Identities=30% Similarity=0.731 Sum_probs=31.1
Q ss_pred eeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeec
Q 010330 192 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRC 254 (513)
Q Consensus 192 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C 254 (513)
-.|..|.|.+.. .|..|+|+=+++... +-.....+|..|+=.|-+ .|+.|
T Consensus 230 ~~C~~CGg~rFl------pC~~C~GS~kv~~~~----~~~~~~~rC~~CNENGLv---rCp~C 279 (281)
T KOG2824|consen 230 GVCESCGGARFL------PCSNCHGSCKVHEEE----EDDGGVLRCLECNENGLV---RCPVC 279 (281)
T ss_pred CcCCCcCCcceE------ecCCCCCceeeeeec----cCCCcEEECcccCCCCce---eCCcc
Confidence 568888877664 588888887765421 112223678888777754 35555
No 122
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.98 E-value=2.8 Score=42.50 Aligned_cols=38 Identities=34% Similarity=0.719 Sum_probs=31.9
Q ss_pred ccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEe--------eeeeecCCceEEe
Q 010330 209 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEVQ 261 (513)
Q Consensus 209 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v~ 261 (513)
..|..|+|.+.+ +|..|+|.-++.. ..|..|+=+|.++
T Consensus 230 ~~C~~CGg~rFl---------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARFL---------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcceE---------------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 579999999875 4999999999987 2599999888664
No 123
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=74.97 E-value=2.8 Score=43.62 Aligned_cols=52 Identities=40% Similarity=0.596 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC-----CcchHHHHHHHHHHHHhhccchhhhhccc
Q 010330 56 ATLQEIKTSYRKLARKYHPDINK-----SPGAEEKFKEISSAYEVLSDDEKRSVYDR 107 (513)
Q Consensus 56 as~~eIk~ayr~la~k~HPD~n~-----~~~a~~~f~~i~~AyevL~d~~kR~~YD~ 107 (513)
++..+|..+|+..+...||+.-. .-..++.|+.|.+||++|.+..+|..+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 67889999999999999999763 12456779999999999998766666654
No 124
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=73.71 E-value=17 Score=34.22 Aligned_cols=26 Identities=12% Similarity=0.387 Sum_probs=17.7
Q ss_pred CeeEEeccCCcEEEEeCCCC-CCCCEEEEcc
Q 010330 332 TSMEVETVEGMKDLRIPSGV-QPGDTVKLQQ 361 (513)
Q Consensus 332 ~~v~V~tldG~~~l~Ip~g~-qpG~~~~l~g 361 (513)
+++.||-| .+.||||. +.|..=.|.|
T Consensus 72 a~i~IPEl----~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 72 ATIRIPEL----GIKIEPGPASQGYISNIEG 98 (163)
T ss_pred cEEEccce----eEEecCCCcCCceEEehHh
Confidence 45666654 58899987 6777766743
No 125
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=71.91 E-value=13 Score=34.95 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=18.4
Q ss_pred CeeEEeccCCcEEEEeCCCCCCCCEEEEcc
Q 010330 332 TSMEVETVEGMKDLRIPSGVQPGDTVKLQQ 361 (513)
Q Consensus 332 ~~v~V~tldG~~~l~Ip~g~qpG~~~~l~g 361 (513)
+++.||-| .+.||||++-|..-.|.|
T Consensus 75 a~i~IPEl----~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 75 ATISIPEL----DLEIPPGPLGGFITTVEG 100 (160)
T ss_pred cEEEeeee----eEEecCCCCCcEEEehHH
Confidence 45666653 688888887777777754
No 126
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.94 E-value=2.9 Score=49.62 Aligned_cols=27 Identities=37% Similarity=0.849 Sum_probs=18.5
Q ss_pred cCCCCCCCcEEEee---------eeeecCCceEEee
Q 010330 236 TCSKCGGDGKIIID---------HCRRCGGNGEVQS 262 (513)
Q Consensus 236 ~C~~C~G~G~~i~~---------~C~~C~G~G~v~~ 262 (513)
.|+.|.|.|++..+ .|..|+|..+-.+
T Consensus 738 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 773 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRE 773 (924)
T ss_pred CCCCCccceEEEEEccCCCCcccCCCCcCCceeChH
Confidence 47777777776532 5888888776544
No 127
>PF13446 RPT: A repeated domain in UCH-protein
Probab=69.98 E-value=7.1 Score=30.33 Aligned_cols=44 Identities=14% Similarity=0.317 Sum_probs=31.8
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhcc
Q 010330 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSD 98 (513)
Q Consensus 45 d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d 98 (513)
+-|+.|||+++.+.+.|-.+|+.... -.| .....+.+|..++.+
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P---------~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN-DDP---------SQKDTLREALRVIAE 49 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH-cCh---------HhHHHHHHHHHHHHH
Confidence 56999999999999999999998875 222 123445566666653
No 128
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=69.70 E-value=4.6 Score=37.37 Aligned_cols=45 Identities=29% Similarity=0.697 Sum_probs=27.0
Q ss_pred eeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCc
Q 010330 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 244 (513)
Q Consensus 191 ~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 244 (513)
...|..|.|.+.. .|..|+|+=.++.......+ ....|+.||=.|
T Consensus 99 ~~~C~~Cgg~rfv------~C~~C~Gs~k~~~~~~~~~~---~~~rC~~Cneng 143 (147)
T cd03031 99 GGVCEGCGGARFV------PCSECNGSCKVFAENATAAG---GFLRCPECNENG 143 (147)
T ss_pred CCCCCCCCCcCeE------ECCCCCCcceEEeccCcccc---cEEECCCCCccc
Confidence 3468888887764 58888888877643211011 124677766554
No 129
>PRK04023 DNA polymerase II large subunit; Validated
Probab=69.48 E-value=2 Score=50.43 Aligned_cols=65 Identities=25% Similarity=0.587 Sum_probs=42.8
Q ss_pred cceeeEe-eeEEEEEeeeeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeee
Q 010330 174 SFEESIF-GGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCR 252 (513)
Q Consensus 174 sLeEa~~-G~~k~v~~~r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~ 252 (513)
++.+|+. +...++++. ...|+.|.-.+ ....|+.|+..-.. ...|+.|.-... ...|+
T Consensus 609 ~i~~A~~~~g~~eVEVg-~RfCpsCG~~t-----~~frCP~CG~~Te~-------------i~fCP~CG~~~~--~y~CP 667 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIG-RRKCPSCGKET-----FYRRCPFCGTHTEP-------------VYRCPRCGIEVE--EDECE 667 (1121)
T ss_pred cHHHHHhcCCceeeccc-CccCCCCCCcC-----CcccCCCCCCCCCc-------------ceeCccccCcCC--CCcCC
Confidence 3566666 566666665 35799998664 34789999887211 246999954432 35599
Q ss_pred ecCCceE
Q 010330 253 RCGGNGE 259 (513)
Q Consensus 253 ~C~G~G~ 259 (513)
+|+..-.
T Consensus 668 KCG~El~ 674 (1121)
T PRK04023 668 KCGREPT 674 (1121)
T ss_pred CCCCCCC
Confidence 9987543
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=66.01 E-value=6.4 Score=36.42 Aligned_cols=38 Identities=37% Similarity=0.809 Sum_probs=29.3
Q ss_pred cccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEee---------eeeecCCceEE
Q 010330 208 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------HCRRCGGNGEV 260 (513)
Q Consensus 208 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~---------~C~~C~G~G~v 260 (513)
...|..|+|.+.+ +|..|+|.-++... .|+.|+=.|.+
T Consensus 99 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 99 GGVCEGCGGARFV---------------PCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCCcCeE---------------ECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 3569999999875 59999999887543 58888866654
No 131
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=62.97 E-value=33 Score=33.18 Aligned_cols=75 Identities=24% Similarity=0.441 Sum_probs=39.0
Q ss_pred cCcccCcccEEEE-Eee-cC-Cccee-eeecCCCCCCCcEEEee------ee--eec-----CCceEEee------eeEE
Q 010330 210 SCKACWGRGGVLK-TQR-TP-FGLIS-QVSTCSKCGGDGKIIID------HC--RRC-----GGNGEVQS------KRSM 266 (513)
Q Consensus 210 ~C~~C~G~G~~~~-~~~-~~-~g~~~-~~~~C~~C~G~G~~i~~------~C--~~C-----~G~G~v~~------~k~l 266 (513)
.|+.|++.|.... ... +| |+-+. +...|+.|+-+-.-+.. +. -+. -.+-+++. --.+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~g~~~p~r~~l~V~~~~DL~r~VvkS~tati~IPEl 81 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSNDVKTLGAKEPKRYILKIDDEADLNRRVVKSESATIRIPEL 81 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCccceeEECCCCCCEEEEEEECChhcccceEEEcCCcEEEccce
Confidence 4888887776532 223 33 44433 34689999765433321 00 000 11122221 1256
Q ss_pred EEEcCCC-CcCCCEEEEcc
Q 010330 267 KVVIPPG-VSNGATMQIRG 284 (513)
Q Consensus 267 ~V~IP~G-v~~G~~Irl~G 284 (513)
.+.|||| +..|..-++.|
T Consensus 82 ~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 82 GLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred EEEECCCccCCceEEeeHh
Confidence 6777787 67777777755
No 132
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=62.67 E-value=35 Score=32.04 Aligned_cols=36 Identities=25% Similarity=0.567 Sum_probs=20.0
Q ss_pred cCcccCcccEEEE-EeecC-Cccee-eeecCCCCCCCcE
Q 010330 210 SCKACWGRGGVLK-TQRTP-FGLIS-QVSTCSKCGGDGK 245 (513)
Q Consensus 210 ~C~~C~G~G~~~~-~~~~~-~g~~~-~~~~C~~C~G~G~ 245 (513)
.|+.|+..|.... ....| |+-+. +...|+.|+=+-.
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ 40 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYRNN 40 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCccc
Confidence 4778877775322 22333 33332 3468999975543
No 133
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=60.59 E-value=5.8 Score=47.27 Aligned_cols=28 Identities=36% Similarity=0.812 Sum_probs=18.4
Q ss_pred cCCCCCCCcEEEee---------eeeecCCceEEeee
Q 010330 236 TCSKCGGDGKIIID---------HCRRCGGNGEVQSK 263 (513)
Q Consensus 236 ~C~~C~G~G~~i~~---------~C~~C~G~G~v~~~ 263 (513)
.|+.|.|.|.+..+ .|..|+|..+..+.
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 776 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRET 776 (943)
T ss_pred CCCcccccceEEEEeccCCCccccCccccCccccccc
Confidence 57777777766532 48888887765543
No 134
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=58.90 E-value=44 Score=32.35 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=19.0
Q ss_pred CeeEEeccCCcEEEEeCCC-CCCCCEEEEcc
Q 010330 332 TSMEVETVEGMKDLRIPSG-VQPGDTVKLQQ 361 (513)
Q Consensus 332 ~~v~V~tldG~~~l~Ip~g-~qpG~~~~l~g 361 (513)
+++.||-| .+.|||| ++-|..-.|.|
T Consensus 74 ati~IPEl----~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 74 ATIRIPEL----GLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred cEEEccce----EEEECCCccCCceEEeeHh
Confidence 45666654 6889998 68888888844
No 135
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=55.78 E-value=3.8 Score=47.42 Aligned_cols=64 Identities=23% Similarity=0.599 Sum_probs=0.0
Q ss_pred ceeeEeee--EEEEEeeeeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeee
Q 010330 175 FEESIFGG--QRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCR 252 (513)
Q Consensus 175 LeEa~~G~--~k~v~~~r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~ 252 (513)
+.+|+.-. ..++++. ...|+.|.-.. ....|+.|+..-.. .-.|+.|+-. +....|+
T Consensus 638 i~~A~~~~~g~i~vei~-~r~Cp~Cg~~t-----~~~~Cp~CG~~T~~-------------~~~Cp~C~~~--~~~~~C~ 696 (900)
T PF03833_consen 638 IQKAAKKGKGTIEVEIG-RRRCPKCGKET-----FYNRCPECGSHTEP-------------VYVCPDCGIE--VEEDECP 696 (900)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCeeEEeee-cccCcccCCcc-----hhhcCcccCCcccc-------------ceeccccccc--cCccccc
Confidence 45555443 2444443 45799997553 34689999775432 2469999753 3345799
Q ss_pred ecCCceE
Q 010330 253 RCGGNGE 259 (513)
Q Consensus 253 ~C~G~G~ 259 (513)
+|+-...
T Consensus 697 ~C~~~~~ 703 (900)
T PF03833_consen 697 KCGRETT 703 (900)
T ss_dssp -------
T ss_pred cccccCc
Confidence 9987643
No 136
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=55.70 E-value=36 Score=27.81 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=33.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 010330 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKE 88 (513)
Q Consensus 43 ~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~ 88 (513)
+++--++.|+++.|+..||+.|-++..+|..=-..|.....+.|..
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~ 47 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEA 47 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHH
Confidence 3566677899999999999999988888875444443344455553
No 137
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.56 E-value=6 Score=47.06 Aligned_cols=12 Identities=33% Similarity=1.057 Sum_probs=7.5
Q ss_pred eeecCCceEEee
Q 010330 251 CRRCGGNGEVQS 262 (513)
Q Consensus 251 C~~C~G~G~v~~ 262 (513)
|+.|.|.|++..
T Consensus 739 C~~C~G~G~~~~ 750 (924)
T TIGR00630 739 CEACQGDGVIKI 750 (924)
T ss_pred CCCCccceEEEE
Confidence 666666666553
No 138
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=53.95 E-value=9.6 Score=45.48 Aligned_cols=12 Identities=33% Similarity=1.057 Sum_probs=8.5
Q ss_pred eeecCCceEEee
Q 010330 251 CRRCGGNGEVQS 262 (513)
Q Consensus 251 C~~C~G~G~v~~ 262 (513)
|+.|.|.|++..
T Consensus 741 C~~C~G~G~~~~ 752 (943)
T PRK00349 741 CEACQGDGVIKI 752 (943)
T ss_pred CCcccccceEEE
Confidence 777777777654
No 139
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=52.55 E-value=8.9 Score=48.56 Aligned_cols=24 Identities=0% Similarity=-0.050 Sum_probs=14.9
Q ss_pred CcEEEEEEEEcCCC-CChhHHHHHHHHH
Q 010330 374 GDHLFIVNVLIPKD-ISDPERALVEEIA 400 (513)
Q Consensus 374 GDL~V~f~V~~P~~-ls~~qr~lLe~l~ 400 (513)
+.||| .+=|+. |.+...+.|-+++
T Consensus 1721 ~~lyi---lDEPt~GLh~~d~~~Ll~~l 1745 (1809)
T PRK00635 1721 PTLFL---LDEIATSLDNQQKSALLVQL 1745 (1809)
T ss_pred CcEEE---EcCCCCCCCHHHHHHHHHHH
Confidence 35655 667876 8877665555543
No 140
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=51.65 E-value=8.6 Score=43.92 Aligned_cols=49 Identities=24% Similarity=0.578 Sum_probs=32.1
Q ss_pred eeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCc
Q 010330 192 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGN 257 (513)
Q Consensus 192 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 257 (513)
..|+.|+..= ......|+.|+..-. ...|+.|+-.=..-...|..|+..
T Consensus 2 ~~Cp~Cg~~n---~~~akFC~~CG~~l~--------------~~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFEN---PNNNRFCQKCGTSLT--------------HKPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcC---CCCCccccccCCCCC--------------CCcCCCCCCCCCcccccccccCCc
Confidence 4799996542 233468999955431 146999976644445579999764
No 141
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=51.26 E-value=56 Score=26.87 Aligned_cols=54 Identities=24% Similarity=0.209 Sum_probs=37.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHH----HHHHHHHhhc
Q 010330 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFK----EISSAYEVLS 97 (513)
Q Consensus 44 ~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~----~i~~AyevL~ 97 (513)
++--.+-|+.+.||.+||..|-.+..+|.-=-..|.....+.|. +|.+|-.-|.
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL 60 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLL 60 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 44445568889999999999999999987655555444556665 4444444443
No 142
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=51.07 E-value=8.6 Score=33.76 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=14.8
Q ss_pred eeeccCCCCCCcccccccccCcccC
Q 010330 191 FETCDSCGGTGAKSSNCIQSCKACW 215 (513)
Q Consensus 191 ~~~C~~C~GtG~~~~~~~~~C~~C~ 215 (513)
+++|++|.-.-+--+..+.+||.|+
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~CG 33 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKCG 33 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCCC
Confidence 4567777666555544555566654
No 143
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=50.63 E-value=13 Score=43.29 Aligned_cols=33 Identities=33% Similarity=0.771 Sum_probs=19.0
Q ss_pred ecCCCCCCCcEEEee---------eeeecCCceEEeeeeEEEEE
Q 010330 235 STCSKCGGDGKIIID---------HCRRCGGNGEVQSKRSMKVV 269 (513)
Q Consensus 235 ~~C~~C~G~G~~i~~---------~C~~C~G~G~v~~~k~l~V~ 269 (513)
-.|..|.|.|.+.-+ +|..|+|..+-. .+++|.
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~--EtLev~ 772 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNR--ETLEVK 772 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCccccc--ceEEEE
Confidence 357777777765432 477777766533 445543
No 144
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=50.10 E-value=32 Score=30.92 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=16.4
Q ss_pred eeEEEEEcCCCCcCCCEEEEccc
Q 010330 263 KRSMKVVIPPGVSNGATMQIRGE 285 (513)
Q Consensus 263 ~k~l~V~IP~Gv~~G~~Irl~G~ 285 (513)
...+++.-+.+++.||.+.+.-+
T Consensus 41 ~~~~~~~~~~~~~~GD~V~v~i~ 63 (135)
T PF04246_consen 41 PITFRAPNPIGAKVGDRVEVEIP 63 (135)
T ss_pred cEEEEecCCCCCCCCCEEEEEec
Confidence 35666677778888888877544
No 145
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=49.93 E-value=11 Score=43.63 Aligned_cols=52 Identities=27% Similarity=0.602 Sum_probs=35.4
Q ss_pred eeeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCc
Q 010330 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGN 257 (513)
Q Consensus 189 ~r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 257 (513)
.....|..|.- ...|+.|...=. .+ + ....-.|..|+-+ ..+...|+.|++.
T Consensus 433 s~~l~C~~Cg~--------v~~Cp~Cd~~lt-~H-~------~~~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 433 APLLLCRDCGY--------IAECPNCDSPLT-LH-K------ATGQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred cceeecccCCC--------cccCCCCCcceE-Ee-c------CCCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 34678999963 468999987622 11 1 1123579999877 5566779999976
No 146
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=46.99 E-value=18 Score=37.51 Aligned_cols=20 Identities=20% Similarity=0.737 Sum_probs=10.2
Q ss_pred cCCCCCCCcEEEeeeeeecC
Q 010330 236 TCSKCGGDGKIIIDHCRRCG 255 (513)
Q Consensus 236 ~C~~C~G~G~~i~~~C~~C~ 255 (513)
.|..|.-.=...+..|+.|+
T Consensus 214 ~CslC~teW~~~R~~C~~Cg 233 (309)
T PRK03564 214 HCNLCESEWHVVRVKCSNCE 233 (309)
T ss_pred EcCCCCCcccccCccCCCCC
Confidence 35555544444444555554
No 147
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=46.62 E-value=6.1 Score=33.84 Aligned_cols=37 Identities=30% Similarity=0.730 Sum_probs=17.1
Q ss_pred cCcccCcccEEEEEeecCCc-ceeeeecCCCCCCCcEE
Q 010330 210 SCKACWGRGGVLKTQRTPFG-LISQVSTCSKCGGDGKI 246 (513)
Q Consensus 210 ~C~~C~G~G~~~~~~~~~~g-~~~~~~~C~~C~G~G~~ 246 (513)
.|..|+|.|.++-..++... .+..-.+|..|.|.|..
T Consensus 7 ~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 7 SCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYS 44 (95)
T ss_pred CcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCC
Confidence 45666666654432222111 12222456666666654
No 148
>PRK05978 hypothetical protein; Provisional
Probab=45.50 E-value=10 Score=35.20 Aligned_cols=25 Identities=36% Similarity=1.101 Sum_probs=12.9
Q ss_pred cCcccCcccEEEEEeecCCcceeeeecCCCCC
Q 010330 210 SCKACWGRGGVLKTQRTPFGLISQVSTCSKCG 241 (513)
Q Consensus 210 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 241 (513)
.||.| |+|...+ |++.....|+.|+
T Consensus 35 rCP~C-G~G~LF~------g~Lkv~~~C~~CG 59 (148)
T PRK05978 35 RCPAC-GEGKLFR------AFLKPVDHCAACG 59 (148)
T ss_pred cCCCC-CCCcccc------cccccCCCccccC
Confidence 35555 3454433 3445556677773
No 149
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=45.02 E-value=30 Score=26.05 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=8.3
Q ss_pred cCcccCcccEEEE
Q 010330 210 SCKACWGRGGVLK 222 (513)
Q Consensus 210 ~C~~C~G~G~~~~ 222 (513)
.||-|+|....++
T Consensus 3 PCPfCGg~~~~~~ 15 (53)
T TIGR03655 3 PCPFCGGADVYLR 15 (53)
T ss_pred CCCCCCCcceeeE
Confidence 5777777766443
No 150
>PRK05580 primosome assembly protein PriA; Validated
Probab=42.82 E-value=20 Score=41.23 Aligned_cols=61 Identities=26% Similarity=0.555 Sum_probs=37.5
Q ss_pred eeEEEEEeee-----eeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecC
Q 010330 181 GGQRGIEVSC-----FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCG 255 (513)
Q Consensus 181 G~~k~v~~~r-----~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~ 255 (513)
|...-+-+++ ...|..|.- ...|+.|.+. ...+.. ...-.|..|+-+ ..+...|+.|+
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~--------~~~C~~C~~~-l~~h~~-------~~~l~Ch~Cg~~-~~~~~~Cp~Cg 428 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGW--------VAECPHCDAS-LTLHRF-------QRRLRCHHCGYQ-EPIPKACPECG 428 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcC--------ccCCCCCCCc-eeEECC-------CCeEECCCCcCC-CCCCCCCCCCc
Confidence 4344444444 678999963 4689999883 222211 123479999755 33455799998
Q ss_pred Cce
Q 010330 256 GNG 258 (513)
Q Consensus 256 G~G 258 (513)
+.-
T Consensus 429 ~~~ 431 (679)
T PRK05580 429 STD 431 (679)
T ss_pred CCe
Confidence 763
No 151
>PF11181 YflT: Heat induced stress protein YflT
Probab=41.03 E-value=8.8 Score=33.02 Aligned_cols=27 Identities=26% Similarity=0.639 Sum_probs=19.7
Q ss_pred CCCChHHHHHHhhcCCCc--ccceeeeec
Q 010330 438 SVGSWWNSVKCFLGQRQS--QERFASVGV 464 (513)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 464 (513)
...+||++++|||.++.. +++|.++..
T Consensus 54 ~~~~~~d~~~~~f~~~~d~~~~~l~~lGl 82 (103)
T PF11181_consen 54 SEESFWDKIKNFFTSGGDELRSKLESLGL 82 (103)
T ss_pred ccccHHHHHHHhccCCcHHHHHHHHHcCC
Confidence 358999999999993332 377777654
No 152
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=40.41 E-value=17 Score=32.83 Aligned_cols=27 Identities=7% Similarity=-0.065 Sum_probs=16.9
Q ss_pred eeeccCCCCCCcccccccccCcccCcc
Q 010330 191 FETCDSCGGTGAKSSNCIQSCKACWGR 217 (513)
Q Consensus 191 ~~~C~~C~GtG~~~~~~~~~C~~C~G~ 217 (513)
+.+|++|.-.-+--+..+.+|+.|+-.
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~ 35 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQ 35 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCc
Confidence 456777776666555566666666443
No 153
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=39.59 E-value=17 Score=20.02 Aligned_cols=13 Identities=54% Similarity=0.902 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhc
Q 010330 85 KFKEISSAYEVLS 97 (513)
Q Consensus 85 ~f~~i~~AyevL~ 97 (513)
+|.++..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 5788899998874
No 154
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=39.12 E-value=39 Score=26.48 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhhcCCC
Q 010330 379 IVNVLIPKDISDPERALVEEIAFLKSPG 406 (513)
Q Consensus 379 ~f~V~~P~~ls~~qr~lLe~l~~~~~~~ 406 (513)
..+..||.+||+.||..+..++.-..-.
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~ 44 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLN 44 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 6778999999999999999999876543
No 155
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=39.03 E-value=25 Score=27.48 Aligned_cols=20 Identities=35% Similarity=0.906 Sum_probs=10.1
Q ss_pred CCCCCCCcEEEeeeeeecCCce
Q 010330 237 CSKCGGDGKIIIDHCRRCGGNG 258 (513)
Q Consensus 237 C~~C~G~G~~i~~~C~~C~G~G 258 (513)
|..|.-.+. .-.|+.|+..|
T Consensus 39 C~~CRk~~~--~Y~CP~CGF~G 58 (59)
T PRK14890 39 CEKCRKQSN--PYTCPKCGFEG 58 (59)
T ss_pred chhHHhcCC--ceECCCCCCcC
Confidence 555544332 22477776554
No 156
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=37.58 E-value=19 Score=36.03 Aligned_cols=15 Identities=27% Similarity=0.793 Sum_probs=10.0
Q ss_pred ccCcccCcccEEEEE
Q 010330 209 QSCKACWGRGGVLKT 223 (513)
Q Consensus 209 ~~C~~C~G~G~~~~~ 223 (513)
.+||+|+|+|++-+.
T Consensus 39 vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 39 VTCPTCQGTGRIPRE 53 (238)
T ss_pred CcCCCCcCCccCCcc
Confidence 467777777776543
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=37.47 E-value=19 Score=41.32 Aligned_cols=50 Identities=26% Similarity=0.595 Sum_probs=33.3
Q ss_pred eeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCc
Q 010330 190 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGN 257 (513)
Q Consensus 190 r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 257 (513)
....|..|. ....|+.|.+.=..-+. ...-.|..|+-.- ....|+.|++.
T Consensus 382 p~l~C~~Cg--------~~~~C~~C~~~L~~h~~--------~~~l~Ch~CG~~~--~p~~Cp~Cgs~ 431 (665)
T PRK14873 382 PSLACARCR--------TPARCRHCTGPLGLPSA--------GGTPRCRWCGRAA--PDWRCPRCGSD 431 (665)
T ss_pred CeeEhhhCc--------CeeECCCCCCceeEecC--------CCeeECCCCcCCC--cCccCCCCcCC
Confidence 356799995 34789999875332110 1124699998653 46789999875
No 158
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=36.43 E-value=1e+02 Score=30.02 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=7.1
Q ss_pred HHHHHHHHhhcc
Q 010330 87 KEISSAYEVLSD 98 (513)
Q Consensus 87 ~~i~~AyevL~d 98 (513)
..+..||+.|.+
T Consensus 5 ~lL~r~~~~l~~ 16 (201)
T PRK12336 5 SLLDRAMEVLPE 16 (201)
T ss_pred HHHHHHHHHCCc
Confidence 345666666654
No 159
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=34.27 E-value=54 Score=29.04 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=14.1
Q ss_pred eeeeeccCCCCCCcccccccccCcccCccc
Q 010330 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRG 218 (513)
Q Consensus 189 ~r~~~C~~C~GtG~~~~~~~~~C~~C~G~G 218 (513)
+....|..|+-...........||.|++..
T Consensus 69 p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 69 KVELECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred CCEEEhhhCCCccccCCccCCcCcCCCCCc
Confidence 455678877644332222222355554443
No 160
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=34.00 E-value=39 Score=35.09 Aligned_cols=20 Identities=25% Similarity=0.688 Sum_probs=9.9
Q ss_pred CCCCCCCcEEEeeeeeecCC
Q 010330 237 CSKCGGDGKIIIDHCRRCGG 256 (513)
Q Consensus 237 C~~C~G~G~~i~~~C~~C~G 256 (513)
|+.|.-.=...+..|+.|+.
T Consensus 213 CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 213 CSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred cCCCCCcccccCccCCCCCC
Confidence 55554444444445555543
No 161
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=33.75 E-value=16 Score=36.43 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=12.3
Q ss_pred eeeeccCCCCCCccccc
Q 010330 190 CFETCDSCGGTGAKSSN 206 (513)
Q Consensus 190 r~~~C~~C~GtG~~~~~ 206 (513)
..++|++|+|+|..+..
T Consensus 37 ~~vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 37 DSVTCPTCQGTGRIPRE 53 (238)
T ss_pred CCCcCCCCcCCccCCcc
Confidence 34578888888887653
No 162
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=31.08 E-value=52 Score=28.95 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=7.6
Q ss_pred eeeeeccCCCCCC
Q 010330 189 SCFETCDSCGGTG 201 (513)
Q Consensus 189 ~r~~~C~~C~GtG 201 (513)
+....|..|....
T Consensus 68 p~~~~C~~Cg~~~ 80 (113)
T PRK12380 68 PAQAWCWDCSQVV 80 (113)
T ss_pred CcEEEcccCCCEE
Confidence 4455677776443
No 163
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.00 E-value=30 Score=38.37 Aligned_cols=52 Identities=27% Similarity=0.522 Sum_probs=32.4
Q ss_pred eeeeccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEeeeeeecCCce
Q 010330 190 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNG 258 (513)
Q Consensus 190 r~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G 258 (513)
....|..|.- ...|+.|.+.=. ++.. ...-.|..|+-+ ..+...|+.|++..
T Consensus 212 ~~~~C~~Cg~--------~~~C~~C~~~l~-~h~~-------~~~l~Ch~Cg~~-~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 212 KNLLCRSCGY--------ILCCPNCDVSLT-YHKK-------EGKLRCHYCGYQ-EPIPKTCPQCGSED 263 (505)
T ss_pred CeeEhhhCcC--------ccCCCCCCCceE-EecC-------CCeEEcCCCcCc-CCCCCCCCCCCCCe
Confidence 3467999963 468999976422 2211 112479999643 33455799998754
No 164
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=30.68 E-value=59 Score=25.84 Aligned_cols=7 Identities=43% Similarity=1.540 Sum_probs=3.9
Q ss_pred ecCCCCC
Q 010330 235 STCSKCG 241 (513)
Q Consensus 235 ~~C~~C~ 241 (513)
.+|++|+
T Consensus 37 v~C~~CG 43 (64)
T PF09855_consen 37 VSCTNCG 43 (64)
T ss_pred EECCCCC
Confidence 4566663
No 165
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=30.60 E-value=32 Score=23.63 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=7.5
Q ss_pred ccCcccCcccEE
Q 010330 209 QSCKACWGRGGV 220 (513)
Q Consensus 209 ~~C~~C~G~G~~ 220 (513)
..|..|++.|.+
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 456667666654
No 166
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=30.05 E-value=73 Score=33.17 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=14.8
Q ss_pred eeeccCCCCCCc--------ccccccccCcccCcccE
Q 010330 191 FETCDSCGGTGA--------KSSNCIQSCKACWGRGG 219 (513)
Q Consensus 191 ~~~C~~C~GtG~--------~~~~~~~~C~~C~G~G~ 219 (513)
...|+.|.+.-. ..+...-.|+.|.-.=.
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~ 223 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWH 223 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccc
Confidence 456777765521 12334456666655443
No 167
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=29.99 E-value=22 Score=45.32 Aligned_cols=28 Identities=36% Similarity=0.603 Sum_probs=20.5
Q ss_pred cCCCCCCCcEEEee---------eeeecCCceEEeee
Q 010330 236 TCSKCGGDGKIIID---------HCRRCGGNGEVQSK 263 (513)
Q Consensus 236 ~C~~C~G~G~~i~~---------~C~~C~G~G~v~~~ 263 (513)
.|+.|.|.|.+..+ .|..|+|..+-.+.
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~ 1645 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLA 1645 (1809)
T ss_pred CCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHH
Confidence 58888888887543 48888888765543
No 168
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=29.75 E-value=45 Score=39.09 Aligned_cols=30 Identities=27% Similarity=0.600 Sum_probs=20.7
Q ss_pred eeeecCCceEEeeee--EEEEEcCCCCcCCCE
Q 010330 250 HCRRCGGNGEVQSKR--SMKVVIPPGVSNGAT 279 (513)
Q Consensus 250 ~C~~C~G~G~v~~~k--~l~V~IP~Gv~~G~~ 279 (513)
.|..|.|.|+++.+. --.|.||--+-+|.+
T Consensus 732 RCe~C~GdG~ikIeM~FLpdVyv~CevC~GkR 763 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLPDVYVPCEVCHGKR 763 (935)
T ss_pred CCccccCCceEEEEeccCCCceeeCCCcCCcc
Confidence 488899988876542 345667766777765
No 169
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=29.16 E-value=1e+02 Score=27.23 Aligned_cols=44 Identities=25% Similarity=0.407 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCC-c----chHHHHHHHHHHHHhhc
Q 010330 54 QNATLQEIKTSYRKLARKYHPDINKS-P----GAEEKFKEISSAYEVLS 97 (513)
Q Consensus 54 ~~as~~eIk~ayr~la~k~HPD~n~~-~----~a~~~f~~i~~AyevL~ 97 (513)
+..+..+++.|.|.+-++.|||.-.. | ..++-++.++.-.+.|.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~ 52 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLK 52 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHh
Confidence 44677889999999999999995321 2 23455677776666665
No 170
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=29.16 E-value=72 Score=26.85 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCCC--cEEEEEEEEcCC-CCChhHHHHHHHHHhhc
Q 010330 362 MGVPDINNPSVRG--DHLFIVNVLIPK-DISDPERALVEEIAFLK 403 (513)
Q Consensus 362 ~G~P~~~~~~~rG--DL~V~f~V~~P~-~ls~~qr~lLe~l~~~~ 403 (513)
.|+|+.--....| +.+.-++|+.|. .|++.|++-++.|.+..
T Consensus 46 ~G~PDl~~~~~~~~~~~~~~iEvK~p~~~ls~~Q~~~~~~l~~~G 90 (100)
T PF08774_consen 46 SGFPDLILWRPRGKRDIFLFIEVKGPGDRLSPNQKEWIDKLREAG 90 (100)
T ss_pred CCCCcEEEEecCCCccEEEEEEEcCCCCCcCHHHHHHHHHHHHCC
Confidence 5666643211223 358888999995 69999999999998763
No 171
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.98 E-value=36 Score=30.09 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=14.4
Q ss_pred CCcchhhHHHHHHHhhhhhhhcc
Q 010330 475 PDSFLMASVVTVFMITSIFNTVG 497 (513)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~ 497 (513)
-||| |+|. ++||+|||+-+..
T Consensus 105 kEGf-~asf-a~FlvtWIi~Yt~ 125 (129)
T KOG3415|consen 105 KEGF-MASF-ALFLVTWIIFYTL 125 (129)
T ss_pred HHHH-HHHH-HHHHHHHHHHHhh
Confidence 3444 5554 5999999987653
No 172
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.59 E-value=53 Score=35.40 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=62.0
Q ss_pred EEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEeccCCcEEEEeCCCCCCCCEE--EEccCCCCCCCCCCCCCc
Q 010330 298 LFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV--KLQQMGVPDINNPSVRGD 375 (513)
Q Consensus 298 L~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~tldG~~~l~Ip~g~qpG~~~--~l~g~G~P~~~~~~~rGD 375 (513)
+|++.+|.+++.|.-.+--+++...-.+.+-=.|.-..=++.++..+|-|+..++-|.++ .|-.+|||-... +..++
T Consensus 371 kve~~ev~edda~ysKkckvfykKdKEf~dkGvgtl~lkp~~~~k~qlLvradtnlGnilLN~Ll~kgMkctr~-gknnv 449 (487)
T KOG2724|consen 371 KVETVEVQEDDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPNDRGKFQLLVRADTNLGNILLNSLLNKGMKCTRV-GKNNV 449 (487)
T ss_pred eeEeecccCccchhccccceEEEecccccccccceeecccccccceeeeehhccchhHHHHHHhhcCCCcceec-cCCce
Confidence 688888888888877777777777777777666655555556687889999999999987 488999997653 35677
Q ss_pred EEEEE
Q 010330 376 HLFIV 380 (513)
Q Consensus 376 L~V~f 380 (513)
|||.+
T Consensus 450 lIvcv 454 (487)
T KOG2724|consen 450 LIVCV 454 (487)
T ss_pred EEEEe
Confidence 77654
No 173
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=26.50 E-value=67 Score=21.18 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhCC
Q 010330 58 LQEIKTSYRKLARKYHP 74 (513)
Q Consensus 58 ~~eIk~ayr~la~k~HP 74 (513)
.++.+.+.|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47889999999999994
No 174
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=26.49 E-value=72 Score=24.52 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=18.9
Q ss_pred CCCcEEEEEEEEcCCC--CChhHHHH
Q 010330 372 VRGDHLFIVNVLIPKD--ISDPERAL 395 (513)
Q Consensus 372 ~rGDL~V~f~V~~P~~--ls~~qr~l 395 (513)
..||+.|-|+|.+|+- +|+++-+.
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea 51 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEA 51 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHH
Confidence 4699999999999996 66665443
No 175
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=26.47 E-value=64 Score=26.17 Aligned_cols=50 Identities=24% Similarity=0.617 Sum_probs=23.7
Q ss_pred eccCCCCCCcccccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCCcEEEee------eeeecCC
Q 010330 193 TCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------HCRRCGG 256 (513)
Q Consensus 193 ~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~------~C~~C~G 256 (513)
.|+.|+.. .........|..|... |.....||.|+-.=.+.+- .|.+|+|
T Consensus 3 ~CP~C~~~-L~~~~~~~~C~~C~~~-------------~~~~a~CPdC~~~Le~LkACGAvdYFC~~c~g 58 (70)
T PF07191_consen 3 TCPKCQQE-LEWQGGHYHCEACQKD-------------YKKEAFCPDCGQPLEVLKACGAVDYFCNHCHG 58 (70)
T ss_dssp B-SSS-SB-EEEETTEEEETTT--E-------------EEEEEE-TTT-SB-EEEEETTEEEEE-TTTT-
T ss_pred cCCCCCCc-cEEeCCEEECcccccc-------------ceecccCCCcccHHHHHHHhcccceeeccCCc
Confidence 57888765 3333345678888653 2334679999876655442 3666665
No 176
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=26.47 E-value=79 Score=24.64 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=23.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhhcCC
Q 010330 379 IVNVLIPKDISDPERALVEEIAFLKSP 405 (513)
Q Consensus 379 ~f~V~~P~~ls~~qr~lLe~l~~~~~~ 405 (513)
.-...||..||+.+|..+-+++....-
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL 42 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGL 42 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 356789999999999999999987544
No 177
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=26.28 E-value=38 Score=36.69 Aligned_cols=14 Identities=29% Similarity=0.890 Sum_probs=9.6
Q ss_pred ecCCCCCCCcEEEe
Q 010330 235 STCSKCGGDGKIII 248 (513)
Q Consensus 235 ~~C~~C~G~G~~i~ 248 (513)
.+|+.|+|+|++..
T Consensus 391 ~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 391 TVCPHCSGTGIVKT 404 (414)
T ss_pred CCCCCCcCeeEEcc
Confidence 56777777777643
No 178
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=26.24 E-value=65 Score=30.24 Aligned_cols=33 Identities=24% Similarity=0.528 Sum_probs=15.6
Q ss_pred ccCcccCcccEEEE-EeecC-Cccee-eeecCCCCC
Q 010330 209 QSCKACWGRGGVLK-TQRTP-FGLIS-QVSTCSKCG 241 (513)
Q Consensus 209 ~~C~~C~G~G~~~~-~~~~~-~g~~~-~~~~C~~C~ 241 (513)
..|+.|+..|.... ...+| |+-+. +...|+.|+
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CG 37 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCG 37 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT-
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCC
Confidence 35888888886432 22333 33322 235777774
No 179
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=25.84 E-value=76 Score=27.96 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=6.5
Q ss_pred eeeeeccCCCC
Q 010330 189 SCFETCDSCGG 199 (513)
Q Consensus 189 ~r~~~C~~C~G 199 (513)
+....|..|+-
T Consensus 68 p~~~~C~~Cg~ 78 (114)
T PRK03681 68 EAECWCETCQQ 78 (114)
T ss_pred CcEEEcccCCC
Confidence 44456777763
No 180
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=24.83 E-value=1e+02 Score=27.27 Aligned_cols=42 Identities=26% Similarity=0.459 Sum_probs=30.3
Q ss_pred EEeCCCCCCCCEEEEccCCCCCCCC-----CCCCCcEEEEEEEEcCC
Q 010330 345 LRIPSGVQPGDTVKLQQMGVPDINN-----PSVRGDHLFIVNVLIPK 386 (513)
Q Consensus 345 l~Ip~g~qpG~~~~l~g~G~P~~~~-----~~~rGDL~V~f~V~~P~ 386 (513)
..||.+.++|+.+.|.|.=.+.... ....+|+.++|++.|++
T Consensus 3 ~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~~~di~lH~n~rf~~ 49 (128)
T smart00276 3 LPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTGGDDIALHFNPRFNE 49 (128)
T ss_pred ccCCCCCCCCCEEEEEEEECCCCCEEEEEeecCCCCEEEEEeccCCC
Confidence 4678889999999999874443211 11237999999999975
No 181
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=24.34 E-value=55 Score=30.32 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=5.3
Q ss_pred ecCCCCCCCc
Q 010330 235 STCSKCGGDG 244 (513)
Q Consensus 235 ~~C~~C~G~G 244 (513)
.+|+.|+++.
T Consensus 131 ~~Cp~C~~~~ 140 (146)
T PF07295_consen 131 PPCPKCGHTE 140 (146)
T ss_pred CCCCCCCCCe
Confidence 3466665544
No 182
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=24.14 E-value=55 Score=29.02 Aligned_cols=19 Identities=37% Similarity=0.994 Sum_probs=11.6
Q ss_pred CCCCCCCcEEEeeeeeecC
Q 010330 237 CSKCGGDGKIIIDHCRRCG 255 (513)
Q Consensus 237 C~~C~G~G~~i~~~C~~C~ 255 (513)
||.|++.=.+..-.|..|+
T Consensus 1 CPvCg~~l~vt~l~C~~C~ 19 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCG 19 (113)
T ss_pred CCCCCCceEEEEEEcCCCC
Confidence 5666655555555666665
No 183
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=23.97 E-value=1.1e+02 Score=31.76 Aligned_cols=13 Identities=23% Similarity=0.255 Sum_probs=6.6
Q ss_pred ccccCcccCcccE
Q 010330 207 CIQSCKACWGRGG 219 (513)
Q Consensus 207 ~~~~C~~C~G~G~ 219 (513)
....|+.|.-.=.
T Consensus 209 RyL~CslC~teW~ 221 (305)
T TIGR01562 209 RYLSCSLCATEWH 221 (305)
T ss_pred eEEEcCCCCCccc
Confidence 4455666654433
No 184
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=23.78 E-value=1e+02 Score=28.92 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=9.5
Q ss_pred ecCCCCCCCcEEE
Q 010330 235 STCSKCGGDGKII 247 (513)
Q Consensus 235 ~~C~~C~G~G~~i 247 (513)
+.|+.|+..|...
T Consensus 2 s~Cp~C~~~~~~~ 14 (161)
T PF03367_consen 2 SLCPNCGENGTTR 14 (161)
T ss_dssp EE-TTTSSCCEEE
T ss_pred CcCCCCCCCcEEE
Confidence 5799999998763
No 185
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=23.68 E-value=88 Score=24.33 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhhcCC
Q 010330 380 VNVLIPKDISDPERALVEEIAFLKSP 405 (513)
Q Consensus 380 f~V~~P~~ls~~qr~lLe~l~~~~~~ 405 (513)
-.+.||..||+.||..+.+|++...-
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~gL 43 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELGL 43 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcCC
Confidence 35789999999999999999987644
No 186
>PRK14051 negative regulator GrlR; Provisional
Probab=23.49 E-value=2.3e+02 Score=25.01 Aligned_cols=71 Identities=10% Similarity=0.107 Sum_probs=40.4
Q ss_pred ccEEEEEEEeeccccccccccceEEEecCHHHHhcCCeeEEe-ccCCcEEEEeCCCCCCCCEEEEccCCCCC
Q 010330 296 GDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVE-TVEGMKDLRIPSGVQPGDTVKLQQMGVPD 366 (513)
Q Consensus 296 GDL~V~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~V~-tldG~~~l~Ip~g~qpG~~~~l~g~G~P~ 366 (513)
-||+++++-..|+.-.--+-+--+.+.|+-.-.-.|..+.+. |+.|..+|.|....+-=..+.|++-|||.
T Consensus 48 ~~iilhvhR~n~ei~SVf~~eqdy~L~i~kk~~sn~~~~~l~~HV~~Nekl~vdv~akFI~~LvI~~~~~~~ 119 (123)
T PRK14051 48 EDIILHVHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLHCHVRGNEKLFVDVYAKFIEPLVIKNTGMPQ 119 (123)
T ss_pred ceeEEEEEecccccccccCccccEEEecchhheeCCCCeEEEEEEcCCcEEEEEEeeeeeeeeEEccCCCcc
Confidence 567777777766654433333334444442222233444443 45665566665554444568999999995
No 187
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=23.42 E-value=95 Score=24.26 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhhcCC
Q 010330 379 IVNVLIPKDISDPERALVEEIAFLKSP 405 (513)
Q Consensus 379 ~f~V~~P~~ls~~qr~lLe~l~~~~~~ 405 (513)
.-.+.||..||+.+|.++-+++....-
T Consensus 17 ~~~l~f~p~lt~~eR~~vH~~a~~~gL 43 (60)
T cd02640 17 IRDMVFSPEFSKEERALIHQIAQKYGL 43 (60)
T ss_pred cceEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 356889999999999999999987644
No 188
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=22.96 E-value=62 Score=24.98 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=16.4
Q ss_pred hhhHHHHHHHhhhhhhhcccc
Q 010330 479 LMASVVTVFMITSIFNTVGKT 499 (513)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~ 499 (513)
||+.+|++||+-+++..+.+.
T Consensus 24 lmTLLl~fFVlL~s~s~~d~~ 44 (58)
T PF13677_consen 24 LMTLLLAFFVLLFSMSSVDKE 44 (58)
T ss_pred HHHHHHHHHHHHHHHHhCCHH
Confidence 788889999998887776543
No 189
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=22.78 E-value=74 Score=27.89 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=12.4
Q ss_pred eeeeeccCCCCCCcccccccccCcccCccc
Q 010330 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRG 218 (513)
Q Consensus 189 ~r~~~C~~C~GtG~~~~~~~~~C~~C~G~G 218 (513)
+....|..|.-........ ..||.|++..
T Consensus 68 p~~~~C~~Cg~~~~~~~~~-~~CP~Cgs~~ 96 (113)
T PF01155_consen 68 PARARCRDCGHEFEPDEFD-FSCPRCGSPD 96 (113)
T ss_dssp --EEEETTTS-EEECHHCC-HH-SSSSSS-
T ss_pred CCcEECCCCCCEEecCCCC-CCCcCCcCCC
Confidence 4456788776554433222 3455555544
No 190
>PF05017 TMP: TMP repeat; InterPro: IPR007713 This short repeat consists of the motif WXXh where X can be any residue and h is a hydrophobic residue. The repeat is named TMP after its occurrence in the tape measure protein (TMP). Tape measure protein is a component of phage tail and probably forms a beta-helix. Truncated forms of TMP lead to shortened tail fibres []. This repeat is also found in non-phage proteins where it may play a structural role.
Probab=22.56 E-value=38 Score=17.51 Aligned_cols=10 Identities=40% Similarity=1.105 Sum_probs=7.6
Q ss_pred HHHHHHhhcC
Q 010330 443 WNSVKCFLGQ 452 (513)
Q Consensus 443 ~~~~~~~~~~ 452 (513)
|+.||++|.+
T Consensus 1 Wn~Ik~~~s~ 10 (11)
T PF05017_consen 1 WNGIKSFFSG 10 (11)
T ss_pred CchHHHHhhc
Confidence 7888888764
No 191
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=22.22 E-value=47 Score=38.61 Aligned_cols=39 Identities=18% Similarity=0.544 Sum_probs=22.6
Q ss_pred eeccCCCCCCcc-cccccccCcccCcccEEEEEeecCCcceeeeecCCCCCCC
Q 010330 192 ETCDSCGGTGAK-SSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 243 (513)
Q Consensus 192 ~~C~~C~GtG~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 243 (513)
..|+.|...=.- .......|..|+-+..+ ...|+.|+++
T Consensus 445 ~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~-------------p~~Cp~Cgs~ 484 (730)
T COG1198 445 AECPNCDSPLTLHKATGQLRCHYCGYQEPI-------------PQSCPECGSE 484 (730)
T ss_pred ccCCCCCcceEEecCCCeeEeCCCCCCCCC-------------CCCCCCCCCC
Confidence 458888654221 12245678877665332 1568888777
No 192
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=22.16 E-value=1e+02 Score=27.20 Aligned_cols=10 Identities=20% Similarity=0.667 Sum_probs=6.0
Q ss_pred eeeeeccCCC
Q 010330 189 SCFETCDSCG 198 (513)
Q Consensus 189 ~r~~~C~~C~ 198 (513)
+....|..|+
T Consensus 68 p~~~~C~~Cg 77 (115)
T TIGR00100 68 PVECECEDCS 77 (115)
T ss_pred CcEEEcccCC
Confidence 3445677776
No 193
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=22.14 E-value=1.4e+02 Score=25.46 Aligned_cols=52 Identities=21% Similarity=0.500 Sum_probs=34.4
Q ss_pred ccCCCC-CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhcc-cccc
Q 010330 51 NVRQNA-TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYD-RFGE 110 (513)
Q Consensus 51 gv~~~a-s~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD-~~G~ 110 (513)
|++++. ...+|-+.++.+...+++. ..+.+..|.+.| +.||.-++.|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~------~~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG------DPELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS---------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 445543 4556777788888777762 346788888888 78888899998 6654
No 194
>PF14353 CpXC: CpXC protein
Probab=21.39 E-value=69 Score=28.39 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=10.0
Q ss_pred ccCcccCcccEEE
Q 010330 209 QSCKACWGRGGVL 221 (513)
Q Consensus 209 ~~C~~C~G~G~~~ 221 (513)
.+||.|+..+..-
T Consensus 2 itCP~C~~~~~~~ 14 (128)
T PF14353_consen 2 ITCPHCGHEFEFE 14 (128)
T ss_pred cCCCCCCCeeEEE
Confidence 5799998888753
No 195
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=21.24 E-value=1.3e+03 Score=26.92 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=10.2
Q ss_pred CCChhHHHHHHHHHh
Q 010330 387 DISDPERALVEEIAF 401 (513)
Q Consensus 387 ~ls~~qr~lLe~l~~ 401 (513)
.+++++.+.+.++++
T Consensus 258 ~~t~ed~e~i~elak 272 (682)
T COG1241 258 EITEEDEEEIKELAK 272 (682)
T ss_pred cCCHHHHHHHHHHhc
Confidence 477777766666665
No 196
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=21.21 E-value=3.5e+02 Score=26.25 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=7.6
Q ss_pred eeeeeccCCCCC
Q 010330 189 SCFETCDSCGGT 200 (513)
Q Consensus 189 ~r~~~C~~C~Gt 200 (513)
..++.|+.|+-.
T Consensus 96 ~~yV~C~~C~~p 107 (201)
T PRK12336 96 DEYVICSECGLP 107 (201)
T ss_pred HheEECCCCCCC
Confidence 446777777644
No 197
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=21.12 E-value=82 Score=28.66 Aligned_cols=11 Identities=45% Similarity=1.117 Sum_probs=5.0
Q ss_pred CCCCCCCcEEE
Q 010330 237 CSKCGGDGKII 247 (513)
Q Consensus 237 C~~C~G~G~~i 247 (513)
|..|+..|.+.
T Consensus 80 C~~Cg~~GH~~ 90 (148)
T PTZ00368 80 CYNCGQTGHIS 90 (148)
T ss_pred cCcCCCCCccc
Confidence 44444444443
No 198
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=20.77 E-value=1.2e+02 Score=21.43 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=15.0
Q ss_pred cCcccCcccEEEEEeecCCc--ceeeeecCCCC
Q 010330 210 SCKACWGRGGVLKTQRTPFG--LISQVSTCSKC 240 (513)
Q Consensus 210 ~C~~C~G~G~~~~~~~~~~g--~~~~~~~C~~C 240 (513)
.|+.|+....+..+.|+--+ .+..--.|..|
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C 34 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNC 34 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSS
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCC
Confidence 58888888877665544221 12222456666
No 199
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=20.55 E-value=49 Score=35.38 Aligned_cols=33 Identities=27% Similarity=0.650 Sum_probs=23.2
Q ss_pred chhhHHHHHHHh----hhhhhhcccccccchhhhhhh
Q 010330 478 FLMASVVTVFMI----TSIFNTVGKTDKWTSVRQRNQ 510 (513)
Q Consensus 478 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 510 (513)
|+.|+++++|.+ ++++++=.+.+.|.|.|.|-+
T Consensus 47 ~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~~~rKrrr 83 (400)
T COG3071 47 FLIIALVVLYLLEWLLRRVLRTPAHTRGWFSRRKRRR 83 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 455666666666 666667778889999877644
No 200
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.54 E-value=14 Score=36.45 Aligned_cols=58 Identities=36% Similarity=0.579 Sum_probs=44.0
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHhhccchhhhhccccccc
Q 010330 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (513)
Q Consensus 42 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~k~HPD~n~~~~a~~~f~~i~~AyevL~d~~kR~~YD~~G~~ 111 (513)
...+||++||+...++.. .+.|+ |.+..+. .+.|..+..|...|.++ .|..||..+..
T Consensus 96 ~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 153 (306)
T KOG0714|consen 96 PDKDFYEFFGVSSPFSGS--KKGYR--------DKNAAPG-EEAFKSEGKAFQSLYGP-KRKQYDSSGSD 153 (306)
T ss_pred hhhhHHHHhCCCCCCccc--cccCC--------ccccccC-ccccccccccccccCCC-ccccccccccc
Confidence 467899999988776655 55555 5554444 66777778899999999 99999987754
No 201
>PF01104 Bunya_NS-S: Bunyavirus non-structural protein NS-s; InterPro: IPR000797 The NSS proteins are encoded in the S RNA from ssRNA negative-strand viruses []. The S RNA also codes for the nucleoprotein N. The two main products are read from overlapping reading frames in the viral complementary sequence. ; GO: 0016032 viral reproduction
Probab=20.33 E-value=31 Score=29.36 Aligned_cols=17 Identities=47% Similarity=0.698 Sum_probs=15.4
Q ss_pred hcccccccchhhhhhhc
Q 010330 495 TVGKTDKWTSVRQRNQR 511 (513)
Q Consensus 495 ~~~~~~~~~~~~~~~~~ 511 (513)
+++.|-||+|+|+||++
T Consensus 37 S~~rRpkl~s~~~~~~~ 53 (91)
T PF01104_consen 37 SMRRRPKLSSVRRRNQR 53 (91)
T ss_pred cccccccEEEEEeecCE
Confidence 67899999999999986
No 202
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=20.02 E-value=1.4e+02 Score=21.28 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=10.0
Q ss_pred cCcccCcccEEEEEee
Q 010330 210 SCKACWGRGGVLKTQR 225 (513)
Q Consensus 210 ~C~~C~G~G~~~~~~~ 225 (513)
.|+.|+....+..+.|
T Consensus 2 ~Cp~C~~~~a~~~q~Q 17 (40)
T smart00440 2 PCPKCGNREATFFQLQ 17 (40)
T ss_pred cCCCCCCCeEEEEEEc
Confidence 4777777766655443
Done!