BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010331
(513 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359480765|ref|XP_002273522.2| PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like
[Vitis vinifera]
Length = 543
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/544 (70%), Positives = 435/544 (79%), Gaps = 32/544 (5%)
Query: 1 MASIALSASAALLPLKRNSG---AWSKLFPFSSKSY---LSFKTCRKNRFISFAASNSSG 54
MA +ALSAS L R SG W LFP SS+ +S +++ SF AS ++
Sbjct: 1 MAQMALSASPTLTLFNRVSGRSKQWGMLFPGSSRKLAINMSILMNFQSKGFSFVASGATQ 60
Query: 55 RNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLV 114
NG + E E+AS+ YTWPDKKKPR+CILGGGFGGLYTALRLESLVW +DKKPQVLLV
Sbjct: 61 WNGGVAELVEGEAASRPYTWPDKKKPRVCILGGGFGGLYTALRLESLVWPEDKKPQVLLV 120
Query: 115 DQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPM 174
DQSERFVFKPMLYELL+GEVDAWEIAPRF+DLLANTGVQFF+DRVK+L PSDHLG+NGP
Sbjct: 121 DQSERFVFKPMLYELLTGEVDAWEIAPRFSDLLANTGVQFFQDRVKVLHPSDHLGMNGPT 180
Query: 175 ACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL 234
+ GGTV LESGL++EYDWLVL+LGAE KLDVVPGAAEFA PFSTLEDACRVD +L L
Sbjct: 181 VSSCGGTVHLESGLVIEYDWLVLALGAEAKLDVVPGAAEFALPFSTLEDACRVDNRLRTL 240
Query: 235 ERRNF-------------------------ERLEEKGIVQAINVETTICPTGTPGNREAA 269
ER+ F ERL++KGIVQAINVETTICPT PGNREAA
Sbjct: 241 ERKRFGRDFPIRVAVVGCGYSGVELAATVSERLQDKGIVQAINVETTICPTAPPGNREAA 300
Query: 270 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKG 329
LKVLS+R V+L+LG+FVRCIR+ E S KQ ESG + + AA+ +K ILELQPA +G
Sbjct: 301 LKVLSSRNVELLLGFFVRCIRKASISEVSEKQTESGTLLDAAAEHEPEKLILELQPAERG 360
Query: 330 LESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 389
L+SQI EADL+LWTVGSKP LP +E P H+LPLNARGQAETDETL VKGHPRIFA+G
Sbjct: 361 LQSQILEADLILWTVGSKPQLPQLE-PCEWPHELPLNARGQAETDETLRVKGHPRIFAVG 419
Query: 390 DSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
DSS+LRDS G+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGRNDAA
Sbjct: 420 DSSSLRDSKGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAA 479
Query: 450 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKV 509
+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHRLKVG+SWLTKSAIDSVA +QS++ KV
Sbjct: 480 ISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRLKVGISWLTKSAIDSVAAVQSSVIKV 539
Query: 510 LSSS 513
LS S
Sbjct: 540 LSGS 543
>gi|296082616|emb|CBI21621.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/544 (69%), Positives = 428/544 (78%), Gaps = 49/544 (9%)
Query: 1 MASIALSASAALLPLKRNSG---AWSKLFPFSSKSY---LSFKTCRKNRFISFAASNSSG 54
MA +ALSAS L R SG W LFP SS+ +S +++ SF AS ++
Sbjct: 1 MAQMALSASPTLTLFNRVSGRSKQWGMLFPGSSRKLAINMSILMNFQSKGFSFVASGATQ 60
Query: 55 RNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLV 114
NG + E E+AS+ YTWPDKKKPR+CILGGGFGGLYTALRLESLVW +DKKPQVLLV
Sbjct: 61 WNGGVAELVEGEAASRPYTWPDKKKPRVCILGGGFGGLYTALRLESLVWPEDKKPQVLLV 120
Query: 115 DQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPM 174
DQSERFVFKPMLYELL+GEVDAWEIAPRF+DLLANTGVQFF+DRVK+L PSDHLG+NGP
Sbjct: 121 DQSERFVFKPMLYELLTGEVDAWEIAPRFSDLLANTGVQFFQDRVKVLHPSDHLGMNGPT 180
Query: 175 ACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL 234
+ GGTV LESGL++EYDWLVL+LGAE KLDVVPGAAEFA PFSTLEDACRVD +L L
Sbjct: 181 VSSCGGTVHLESGLVIEYDWLVLALGAEAKLDVVPGAAEFALPFSTLEDACRVDNRLRTL 240
Query: 235 ERRNF-------------------------ERLEEKGIVQAINVETTICPTGTPGNREAA 269
ER+ F ERL++KGIVQAINVETTICPT PGNREAA
Sbjct: 241 ERKRFGRDFPIRVAVVGCGYSGVELAATVSERLQDKGIVQAINVETTICPTAPPGNREAA 300
Query: 270 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKG 329
LKVLS+R V+L+LG+FVRCIR+ AS+ + E +K ILELQPA +G
Sbjct: 301 LKVLSSRNVELLLGFFVRCIRK-----ASISEHE------------PEKLILELQPAERG 343
Query: 330 LESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 389
L+SQI EADL+LWTVGSKP LP +E P H+LPLNARGQAETDETL VKGHPRIFA+G
Sbjct: 344 LQSQILEADLILWTVGSKPQLPQLE-PCEWPHELPLNARGQAETDETLRVKGHPRIFAVG 402
Query: 390 DSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
DSS+LRDS G+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGRNDAA
Sbjct: 403 DSSSLRDSKGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAA 462
Query: 450 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKV 509
+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHRLKVG+SWLTKSAIDSVA +QS++ KV
Sbjct: 463 ISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRLKVGISWLTKSAIDSVAAVQSSVIKV 522
Query: 510 LSSS 513
LS S
Sbjct: 523 LSGS 526
>gi|255574196|ref|XP_002528013.1| NADH dehydrogenase, putative [Ricinus communis]
gi|223532582|gb|EEF34369.1| NADH dehydrogenase, putative [Ricinus communis]
Length = 536
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/536 (69%), Positives = 424/536 (79%), Gaps = 27/536 (5%)
Query: 1 MASIALSASAALLPLKRNSGAWSKLFPFSSKSYLSFKTCRKNRFISFAASNSSGRNGDLV 60
MA +ALS +A L+P+ R + KLFP + KS + + NR ++ G N +
Sbjct: 1 MAIMALSCTATLVPVNRIANRVHKLFPTAPKSSIRCQLF-SNRGFRLVGCSAIGGNQGVA 59
Query: 61 VTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120
S+ E+ + YTWPD KKPR+CILGGGFGGLYTALRLESLVW DDKKPQVLLVDQS F
Sbjct: 60 EISQSETRPRIYTWPDNKKPRVCILGGGFGGLYTALRLESLVWADDKKPQVLLVDQSAHF 119
Query: 121 VFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGG 180
VFKPMLYELLSGEVDAWEIAPRF+DLLANTGV F +D+VKLL PSDHLG NG + GG
Sbjct: 120 VFKPMLYELLSGEVDAWEIAPRFSDLLANTGVLFLQDKVKLLQPSDHLGKNGSSGSSCGG 179
Query: 181 TVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF- 239
TVLL SGL++EYDWLVL+LGAE +LDVVPGAA+ AFPFSTLEDACRV+ KL+ LERRNF
Sbjct: 180 TVLLASGLLIEYDWLVLALGAEARLDVVPGAAKCAFPFSTLEDACRVNHKLNALERRNFG 239
Query: 240 ------------------------ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA 275
ERL+E+G++QAIN++T ICP PGNREAAL+VLS+
Sbjct: 240 KDSLIRVAVVGCGYSGVELAATISERLKERGVIQAINIDTNICPAAPPGNREAALRVLSS 299
Query: 276 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 335
RKVQL+LGYFVRCI+ + E S E A NIA++ +S+KY LELQPA +GL+SQI
Sbjct: 300 RKVQLLLGYFVRCIQIANDLETSAMSAEVDASENIASEHSSEKYFLELQPAERGLQSQIL 359
Query: 336 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 395
EADLVLWTVGSKPLL +E + + +LPLNARGQAETDETL VKGHPRIFALGDSSALR
Sbjct: 360 EADLVLWTVGSKPLLSQLE-SDYQSRELPLNARGQAETDETLRVKGHPRIFALGDSSALR 418
Query: 396 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 455
DSSGR LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGRNDAA+SPSF+
Sbjct: 419 DSSGRLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAALSPSFI 478
Query: 456 EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLS 511
EG+TL+GPIGH+ARKLAYLIRLPTDEHRLKVG+SWLTKSAIDSVA +QSTL KVLS
Sbjct: 479 EGLTLEGPIGHAARKLAYLIRLPTDEHRLKVGISWLTKSAIDSVASMQSTLAKVLS 534
>gi|224093652|ref|XP_002309949.1| predicted protein [Populus trichocarpa]
gi|222852852|gb|EEE90399.1| predicted protein [Populus trichocarpa]
Length = 553
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/529 (67%), Positives = 415/529 (78%), Gaps = 54/529 (10%)
Query: 18 NSGAWSKLFPFSSKSYLSFKTCRKNRFISF--------AASNSSGRNGDLVVTSEDESAS 69
N+ W+K+ +S S ++F + R I F AA++ S N D+ S+ E+
Sbjct: 46 NANRWNKVSSRTSHS-INFSLLFEKRGIGFRNGIVAVAAAASPSPVNEDI---SQKETPQ 101
Query: 70 QTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL 129
+ YTWPD KKP++CILGGGFGGLYTALRLESL+W DDKKPQVLLVDQSERFVFKP+LYEL
Sbjct: 102 RIYTWPDNKKPKVCILGGGFGGLYTALRLESLIWADDKKPQVLLVDQSERFVFKPLLYEL 161
Query: 130 LSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI 189
LSGEVDAWEIAPRF++LLANTG+QF +DRVK+L P+DHLG+NG GGTV+LESGL+
Sbjct: 162 LSGEVDAWEIAPRFSELLANTGIQFLRDRVKMLHPADHLGMNGSTGSCSGGTVVLESGLL 221
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF---------- 239
+EYDWLVLSLGA KLD VPGAAEFAFPFSTLEDAC+VD KL ELERR F
Sbjct: 222 IEYDWLVLSLGAGAKLDTVPGAAEFAFPFSTLEDACKVDNKLKELERRKFGKDSLIRVAV 281
Query: 240 ---------------ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 284
ERL+++G+VQAINV TTI PT PGNREAALKVLS+RKVQL+LGY
Sbjct: 282 VGCGYSGVELAATVSERLQDRGLVQAINVNTTILPTAPPGNREAALKVLSSRKVQLLLGY 341
Query: 285 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 344
FVRCIR+ + E + S+KYILELQPA +GL+SQI EADLVLWTV
Sbjct: 342 FVRCIRKESDLE----------------EHGSEKYILELQPAERGLQSQILEADLVLWTV 385
Query: 345 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
GS+P LP +E P ++ H+LPLN RGQAETDETL VKGHPRIFALGDSSALRD +GR LPA
Sbjct: 386 GSQPPLPQLE-PYDKTHELPLNGRGQAETDETLRVKGHPRIFALGDSSALRDMNGRILPA 444
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 464
TAQVAFQQADF GWNLWAAINDRPLLPFRFQNLGEMM LGRNDAA+SPSF+EG+TL+GP+
Sbjct: 445 TAQVAFQQADFTGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAALSPSFIEGLTLEGPV 504
Query: 465 GHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 513
GH+ARK+AYLIRLPTDEHRLKVG+SWLTKSA+DSVA +QSTL+KVLS S
Sbjct: 505 GHAARKIAYLIRLPTDEHRLKVGISWLTKSAVDSVASIQSTLSKVLSGS 553
>gi|147790504|emb|CAN61189.1| hypothetical protein VITISV_003541 [Vitis vinifera]
Length = 504
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/541 (65%), Positives = 403/541 (74%), Gaps = 65/541 (12%)
Query: 1 MASIALSASAALLPLKRNSGAWSKLFPFSSKSY---LSFKTCRKNRFISFAASNSSGRNG 57
MA +ALSAS L S W LFP SS+ +S +++ SF AS ++ NG
Sbjct: 1 MAQMALSASPTLTLFNSRSKQWGMLFPGSSRKLAINMSILMNFQSKGFSFVASGATQWNG 60
Query: 58 DLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117
+ E E+AS+ YTWPDKKKPR+CILGGGFGGLYTALRLESLVW +DKKPQVLLVDQS
Sbjct: 61 GVAELVEGEAASRPYTWPDKKKPRVCILGGGFGGLYTALRLESLVWPEDKKPQVLLVDQS 120
Query: 118 ERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACT 177
ERFVFKPMLYELL+GEVDAWEIAPRF+DLLANTGVQFF+DRVK+L PSDHLG+NGP +
Sbjct: 121 ERFVFKPMLYELLTGEVDAWEIAPRFSDLLANTGVQFFQDRVKVLHPSDHLGMNGPTVSS 180
Query: 178 HGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR 237
GGTV LESGL++EYDWLVL+LGAE KLDVVPGAAEFA PFSTLEDACRVD +L LER+
Sbjct: 181 CGGTVHLESGLVIEYDWLVLALGAEAKLDVVPGAAEFALPFSTLEDACRVDNRLRTLERK 240
Query: 238 NF-------------------------ERLEEKGIVQAINVETTICPTGTPGNREAALKV 272
F ERL++KGIVQAINVETTICPT PGNREAALKV
Sbjct: 241 RFGRDFPIRVAVVGCGYSGVELAATVSERLQDKGIVQAINVETTICPTAPPGNREAALKV 300
Query: 273 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 332
LS+R V+L+LGYFVRCIR+ E S KQ ESG + + AA+ +K ILELQPA +GL+S
Sbjct: 301 LSSRNVELLLGYFVRCIRKASISEVSEKQTESGTLLDAAAEHEPEKLILELQPAERGLQS 360
Query: 333 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 392
QI EADL+LWT GHPRIFA+GDSS
Sbjct: 361 QILEADLILWT-------------------------------------GHPRIFAVGDSS 383
Query: 393 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 452
+LRDS G+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGRNDAA+SP
Sbjct: 384 SLRDSKGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAAISP 443
Query: 453 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSS 512
SF+EG+TL GPIGH+ARKLAYLIRLPTDEHRLKVG+SWLTKSAIDSVA +QS++ KVLS
Sbjct: 444 SFIEGLTLXGPIGHAARKLAYLIRLPTDEHRLKVGISWLTKSAIDSVAAVQSSVIKVLSG 503
Query: 513 S 513
S
Sbjct: 504 S 504
>gi|356512870|ref|XP_003525138.1| PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like
[Glycine max]
Length = 544
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/547 (65%), Positives = 417/547 (76%), Gaps = 37/547 (6%)
Query: 1 MASIALSA--SAALLPLKRNSGAWSKLFPFSSKSY-----LSFKTCRKNRFISFAASNSS 53
M IAL+A S ++ R + WS L P +S + + RK + F AS +
Sbjct: 1 MLHIALAAPVSPTVVAFHRGAKQWSALIPNFRRSRGIGSSVFSSSLRKRLQLRFFASGEN 60
Query: 54 GRNGDLVV-TSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVL 112
G NG ++ SE E + WPD KKPR+CILGGGFGGLYTALRLESL W DDKKPQ++
Sbjct: 61 GGNGGVLEEISEAEKEPTNFAWPDNKKPRVCILGGGFGGLYTALRLESLEWPDDKKPQIV 120
Query: 113 LVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNG 172
LVDQSERFVFKPMLYELLSGEVD WEIAPRF+DLLANT VQFFKDRVK+L PSDH G+NG
Sbjct: 121 LVDQSERFVFKPMLYELLSGEVDEWEIAPRFSDLLANTSVQFFKDRVKVLNPSDHWGMNG 180
Query: 173 PMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS 232
A + GGTV LESGL++EYDWLVL+LGAE KLDVVPGA EFA PFSTLEDA +V+ KL+
Sbjct: 181 SKASSCGGTVHLESGLLIEYDWLVLALGAEAKLDVVPGAIEFAIPFSTLEDARKVNDKLT 240
Query: 233 ELERRNF-------------------------ERLEEKGIVQAINVETTICPTGTPGNRE 267
+LER+ F ERL+ +GIV+AINVET ICP PGNRE
Sbjct: 241 KLERKTFGTDFQISVAVVGCGYSGVELAATLAERLQNRGIVRAINVETMICPNAPPGNRE 300
Query: 268 AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN-IAADKNSDKYILELQPA 326
ALKVLS+RKV+L+LGYFVRCIRR+ + E+S P +G N + +KYILELQPA
Sbjct: 301 VALKVLSSRKVELLLGYFVRCIRRLSDLESS--DPLTGVDENSTEVVPDFEKYILELQPA 358
Query: 327 IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIF 386
+G++S+I EADLVLWTVG+KP LP +EP + +PLNARGQAETDETL VKGHPRIF
Sbjct: 359 ERGMQSKIIEADLVLWTVGTKPPLPQLEPSDEPFV-IPLNARGQAETDETLRVKGHPRIF 417
Query: 387 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 446
ALGDSSALRDS+GR LPATAQVAFQQADF GWNLWAAIN RPLLPFRFQNLGEMM LGRN
Sbjct: 418 ALGDSSALRDSNGRILPATAQVAFQQADFTGWNLWAAINGRPLLPFRFQNLGEMMTLGRN 477
Query: 447 DAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTL 506
DAA+SPSF++G+TL+G IGH+ARK+AYLIRLPTDEHRLKVG+SWLTKSAIDSV+ LQSTL
Sbjct: 478 DAAISPSFIDGLTLEGSIGHTARKIAYLIRLPTDEHRLKVGISWLTKSAIDSVSSLQSTL 537
Query: 507 TKVLSSS 513
KVLS S
Sbjct: 538 YKVLSGS 544
>gi|449457355|ref|XP_004146414.1| PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 542
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/546 (64%), Positives = 408/546 (74%), Gaps = 39/546 (7%)
Query: 1 MASIALSASAALLPLK--RNSGAWSKLFPFSSKSYLSFKTCR----KNRFISFAASNSSG 54
MA IA S S +L PL SG KLFP SS L +CR + + I A S+SS
Sbjct: 1 MAPIAFSLSVSLGPLNFAGASGGSGKLFPGSS-GRLGTNSCRFSSSRGKGIRCAVSSSSN 59
Query: 55 RNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLV 114
NG + SE E A Y WPD KKPR+CILGGGFGGLYTALRLESL W D+KKPQV+LV
Sbjct: 60 NNGGVAEISESELAKHFYAWPDYKKPRVCILGGGFGGLYTALRLESLFWPDNKKPQVVLV 119
Query: 115 DQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPM 174
DQSE FVFKPMLYELLSGEVDAWEIAPRF+DLLANT +QF +D+VKL+ P DH N P
Sbjct: 120 DQSEHFVFKPMLYELLSGEVDAWEIAPRFSDLLANTSIQFIQDKVKLVDPCDHYDANNPK 179
Query: 175 ACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL 234
+ GTV LESGL +EYDWLVL+LGAE KLD+VPGAAE+A PFSTL DA RVD +L L
Sbjct: 180 NPSCSGTVYLESGLHIEYDWLVLALGAEAKLDLVPGAAEYALPFSTLWDAQRVDSRLKIL 239
Query: 235 ERRNF-------------------------ERLEEKGIVQAINVETTICPTGTPGNREAA 269
ER NF ERL+++G+VQAINVET ICPT PGNREAA
Sbjct: 240 ERINFNKKSLIRVAIVGCGYSGVELAATISERLQDRGLVQAINVETMICPTAPPGNREAA 299
Query: 270 LKVLSARKVQLVLGYFVRCIRRVGEFEASVK---QPESGAIPNIAADKNSDKYILELQPA 326
LKVLS+R V+L+LGY VR I+RV + E S + +P G P++A + +Y LELQPA
Sbjct: 300 LKVLSSRNVELLLGYIVRSIQRVDDAETSEEANNRPSQGTQPDLA----TSRYRLELQPA 355
Query: 327 IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIF 386
+G + +I EADLVLWTVGSK LLP +EP N LPLN RGQAETDETL V+GHPRIF
Sbjct: 356 ERGSQGRILEADLVLWTVGSKSLLPTLEPSKNYRKQLPLNGRGQAETDETLRVRGHPRIF 415
Query: 387 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 446
ALGDSSALRD +GRPLPATAQVAFQQADF GWNLWAAIN+R LLPFR+QNLGEMM LGRN
Sbjct: 416 ALGDSSALRDPNGRPLPATAQVAFQQADFVGWNLWAAINNRSLLPFRYQNLGEMMTLGRN 475
Query: 447 DAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTL 506
DA+VSPSF+EG+TL+GPIGH+ARK+AYLIRLPTDEHR+KVG+SWLTKSA+DS+A +Q+T
Sbjct: 476 DASVSPSFIEGLTLEGPIGHAARKIAYLIRLPTDEHRVKVGISWLTKSAVDSIATIQTTF 535
Query: 507 TKVLSS 512
T V +S
Sbjct: 536 TNVFTS 541
>gi|449480895|ref|XP_004156024.1| PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 542
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/546 (64%), Positives = 409/546 (74%), Gaps = 39/546 (7%)
Query: 1 MASIALSASAALLPLK--RNSGAWSKLFPFSSKSYLSFKTCR----KNRFISFAASNSSG 54
MA IA S S +L PL +SG KLFP SS L +CR + + I A S+SS
Sbjct: 1 MAPIAFSLSVSLGPLNFAGSSGGSGKLFPGSS-GRLGTNSCRFSSSRGKGIRCAVSSSSN 59
Query: 55 RNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLV 114
NG + SE E A Y WPD KKPR+CILGGGFGGLYTALRLESL W D+KKPQV+LV
Sbjct: 60 NNGGVAEISESELAKHFYAWPDYKKPRVCILGGGFGGLYTALRLESLFWPDNKKPQVVLV 119
Query: 115 DQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPM 174
DQSE FVFKPMLYELLSGEVDAWEIAPRF+DLLANT +QF +D+VKL+ P DH N P
Sbjct: 120 DQSEHFVFKPMLYELLSGEVDAWEIAPRFSDLLANTSIQFIQDKVKLVDPCDHYDANNPK 179
Query: 175 ACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL 234
+ GTV LESGL +EYDWLVL+LGAE KLD+VPGAAE+A PFSTL DA RVD +L L
Sbjct: 180 NPSCSGTVYLESGLHIEYDWLVLALGAEAKLDLVPGAAEYALPFSTLWDAQRVDSRLKIL 239
Query: 235 ERRNF-------------------------ERLEEKGIVQAINVETTICPTGTPGNREAA 269
ER NF ERL+++G+VQAINVET ICPT PGNREAA
Sbjct: 240 ERINFNKKSLIRVAIVGCGYSGVELAATISERLQDRGLVQAINVETMICPTAPPGNREAA 299
Query: 270 LKVLSARKVQLVLGYFVRCIRRVGEFEASVK---QPESGAIPNIAADKNSDKYILELQPA 326
LKVLS+R V+L+LGY VR I+RV + E S + +P G P++A + +Y LELQPA
Sbjct: 300 LKVLSSRNVELLLGYIVRSIQRVDDAETSEEANNRPSQGTQPDLA----TSRYRLELQPA 355
Query: 327 IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIF 386
+G + +I EADLVLWTVGSK LLP +EP N LPLN RGQAETDETL V+GHPRIF
Sbjct: 356 ERGSQGRILEADLVLWTVGSKSLLPTLEPSKNYRKQLPLNGRGQAETDETLRVRGHPRIF 415
Query: 387 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 446
ALGDSSALRD +GRPLPATAQVAFQQADF GWNLWAAIN+R LLPFR+QNLGEMM LGRN
Sbjct: 416 ALGDSSALRDPNGRPLPATAQVAFQQADFVGWNLWAAINNRSLLPFRYQNLGEMMTLGRN 475
Query: 447 DAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTL 506
DA+VSPSF+EG++L+GPIGH+ARK+AYLIRLPTDEHR+KVG+SWLTKSA+DS+A +Q+T
Sbjct: 476 DASVSPSFIEGLSLEGPIGHAARKIAYLIRLPTDEHRVKVGISWLTKSAVDSIATIQTTF 535
Query: 507 TKVLSS 512
T V +S
Sbjct: 536 TNVFTS 541
>gi|297810995|ref|XP_002873381.1| hypothetical protein ARALYDRAFT_908854 [Arabidopsis lyrata subsp.
lyrata]
gi|297319218|gb|EFH49640.1| hypothetical protein ARALYDRAFT_908854 [Arabidopsis lyrata subsp.
lyrata]
Length = 519
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/496 (66%), Positives = 383/496 (77%), Gaps = 51/496 (10%)
Query: 44 FISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVW 103
++S A +N SG SE+E+A +TYTWPD K+PR+CILGGGFGGLYTALRLESLVW
Sbjct: 49 YLSRAVTNYSGTTE----ISENETAPRTYTWPDNKRPRVCILGGGFGGLYTALRLESLVW 104
Query: 104 QDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLC 163
DDKKPQV+LVDQSERFVFKPMLYELLSGEVD WEIAPRF+DLL NTG+QF +DRVK L
Sbjct: 105 PDDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIQFLRDRVKTLL 164
Query: 164 PSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
P DHLGVNG + GGTVLLESG +EYDWLVL+LGAE KLDVVPGA E AFPF TLED
Sbjct: 165 PCDHLGVNGSESSVTGGTVLLESGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLED 224
Query: 224 ACRVDRKLSELERRNF-------------------------ERLEEKGIVQAINVETTIC 258
A RV+ KLS+LER+NF ERL+++GIVQ+INV I
Sbjct: 225 AIRVNEKLSKLERKNFKDGSAIKVAVVGCGYAGVELAATISERLQDRGIVQSINVSKDIL 284
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 318
+ GNREAA+KVL++RKVQL+LGY V+ I+R A+D D+
Sbjct: 285 TSAPNGNREAAMKVLTSRKVQLLLGYLVQSIKR-------------------ASDSEEDE 325
Query: 319 -YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETL 377
Y+LELQPA +GLESQI EAD+VLWTVG+KPLL +EP + LPLNARGQAETDETL
Sbjct: 326 GYLLELQPAERGLESQIIEADIVLWTVGAKPLLTKLEPSGPNV--LPLNARGQAETDETL 383
Query: 378 CVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNL 437
VKGHPRIFALGDSS+LRD +G+ LP TAQVAFQ+ADF GWN+WAAIN+RPLLPFRFQNL
Sbjct: 384 RVKGHPRIFALGDSSSLRDPNGKLLPTTAQVAFQEADFTGWNIWAAINNRPLLPFRFQNL 443
Query: 438 GEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAID 497
GEMM LGR DAA+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHR KVG+SW KSA+D
Sbjct: 444 GEMMTLGRYDAAISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRFKVGISWFAKSAVD 503
Query: 498 SVALLQSTLTKVLSSS 513
S+ALLQS LTKVLS S
Sbjct: 504 SIALLQSNLTKVLSGS 519
>gi|147641610|sp|Q8GXR9.2|DHNA_ARATH RecName: Full=NADH dehydrogenase C1, chloroplastic/mitochondrial;
Flags: Precursor
Length = 519
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/495 (66%), Positives = 380/495 (76%), Gaps = 49/495 (9%)
Query: 44 FISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVW 103
++S A +N+SG S++E+A +TY+WPD K+PR+CILGGGFGGLYTALRLESLVW
Sbjct: 49 YLSRAVTNNSGTTE----ISDNETAPRTYSWPDNKRPRVCILGGGFGGLYTALRLESLVW 104
Query: 104 QDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLC 163
+DKKPQV+LVDQSERFVFKPMLYELLSGEVD WEIAPRF+DLL NTG+QF +DRVK L
Sbjct: 105 PEDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIQFLRDRVKTLL 164
Query: 164 PSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
P DHLGVNG GGTVLLESG +EYDWLVL+LGAE KLDVVPGA E AFPF TLED
Sbjct: 165 PCDHLGVNGSEISVTGGTVLLESGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLED 224
Query: 224 ACRVDRKLSELERRNF-------------------------ERLEEKGIVQAINVETTIC 258
A RV+ KLS+LER+NF ERL+++GIVQ+INV I
Sbjct: 225 AIRVNEKLSKLERKNFKDGSAIKVAVVGCGYAGVELAATISERLQDRGIVQSINVSKNIL 284
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 318
+ GNREAA+KVL++RKVQL+LGY V+ I+R E +
Sbjct: 285 TSAPDGNREAAMKVLTSRKVQLLLGYLVQSIKRASNLE------------------EDEG 326
Query: 319 YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 378
Y LELQPA +GLESQI EAD+VLWTVG+KPLL +EP + LPLNARGQAETDETL
Sbjct: 327 YFLELQPAERGLESQIIEADIVLWTVGAKPLLTKLEPSGPNV--LPLNARGQAETDETLR 384
Query: 379 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 438
VKGHPRIFALGDSS+LRDS+G+ LP TAQVAFQ+ADF GWN+WAAIN+RPLLPFRFQNLG
Sbjct: 385 VKGHPRIFALGDSSSLRDSNGKILPTTAQVAFQEADFTGWNIWAAINNRPLLPFRFQNLG 444
Query: 439 EMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDS 498
EMM LGR DAA+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHR KVG+SW KSA+DS
Sbjct: 445 EMMTLGRYDAAISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRFKVGISWFAKSAVDS 504
Query: 499 VALLQSTLTKVLSSS 513
+ALLQS LTKVLS S
Sbjct: 505 IALLQSNLTKVLSGS 519
>gi|356527534|ref|XP_003532364.1| PREDICTED: LOW QUALITY PROTEIN: NADH dehydrogenase C1,
chloroplastic/mitochondrial-like [Glycine max]
Length = 576
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/542 (64%), Positives = 402/542 (74%), Gaps = 55/542 (10%)
Query: 10 AALLP-LKRNSGAWSKLFPFSSKSYLSFKTCRKNRFISFAASNSSGRNGDLVVTSEDESA 68
+AL P +R+ GA S LF S + L RF FA+ + G G + SE E
Sbjct: 52 SALFPSFRRSRGAGSSLFASSLRKRLQL------RF--FASGENGGTGGAVEEISEAEKE 103
Query: 69 SQTYTWPDKK-----KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123
+ WPD K +PR+CILGGGFGGLYTALRLESL W DDKK Q++LVDQSE FVFK
Sbjct: 104 PTNFAWPDNKNYLIAEPRVCILGGGFGGLYTALRLESLEWPDDKKTQIVLVDQSECFVFK 163
Query: 124 PMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVL 183
PMLYELLSGEVD WEIAP F+DLLANT VQFFKDRVK+L PSDH G+NG A + GGTV
Sbjct: 164 PMLYELLSGEVDKWEIAPPFSDLLANTSVQFFKDRVKVLNPSDHWGMNGSKASSCGGTVH 223
Query: 184 LESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF---- 239
LESGL+VEYDWLVL+LGAE KLDVVPGA EFA PFS LEDA +V+ KL++LER+ F
Sbjct: 224 LESGLLVEYDWLVLALGAESKLDVVPGAVEFAIPFSMLEDAPKVNDKLTKLERKTFGKDF 283
Query: 240 ---------------------ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKV 278
E L+ +GIV+AINVET ICP PGNRE ALKVLS+RKV
Sbjct: 284 QISVAVIGCGYSGVELAATLAEXLQNRGIVRAINVETMICPNAQPGNREVALKVLSSRKV 343
Query: 279 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS-------DKYILELQPAIKGLE 331
+L+LGYFV CI+R+ E E+S AD+NS +KYILELQPA +G++
Sbjct: 344 ELLLGYFVCCIQRLSELESSDTL--------TGADENSTEVVPDFEKYILELQPAERGMQ 395
Query: 332 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 391
S+I EADLVLWT G+KP LP +EP + +PLNARGQAETDETL VKGHPRIFALGDS
Sbjct: 396 SKIVEADLVLWTAGTKPPLPQLEPSDVPFA-IPLNARGQAETDETLRVKGHPRIFALGDS 454
Query: 392 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
ALRDS+GR LPATAQVAFQQADF GWNLWAAIN RPLLPFRFQNLGEMM LGRNDAA+S
Sbjct: 455 FALRDSNGRILPATAQVAFQQADFTGWNLWAAINGRPLLPFRFQNLGEMMTLGRNDAAIS 514
Query: 452 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLS 511
PSF++G+TL+G +GH+ARK+AYLIRLPTDEHRLKVG+SWLTKSAIDSV+ LQSTL KV+S
Sbjct: 515 PSFIDGLTLEGSVGHTARKIAYLIRLPTDEHRLKVGISWLTKSAIDSVSSLQSTLYKVVS 574
Query: 512 SS 513
S
Sbjct: 575 GS 576
>gi|26451210|dbj|BAC42708.1| putative NADH dehydrogenase [Arabidopsis thaliana]
Length = 551
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/495 (66%), Positives = 379/495 (76%), Gaps = 49/495 (9%)
Query: 44 FISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVW 103
++S A +N+SG S++E+A +TY+WPD K+PR+CILGGGFGGLYTALRLESLVW
Sbjct: 49 YLSRAVTNNSGTTE----ISDNETAPRTYSWPDNKRPRVCILGGGFGGLYTALRLESLVW 104
Query: 104 QDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLC 163
+DKKPQV+LVDQSERFVFKPMLYELLSGEVD WEIAPRF+DLL NTG+QF +DRVK L
Sbjct: 105 PEDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIQFLRDRVKTLL 164
Query: 164 PSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
P DHLGVNG GGTVLLESG +EYDWLVL+LGAE KLDVVPGA E AFPF TLED
Sbjct: 165 PCDHLGVNGSEISVTGGTVLLESGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLED 224
Query: 224 ACRVDRKLSELERRNF-------------------------ERLEEKGIVQAINVETTIC 258
A RV+ KLS+LER+NF ERL+++GIVQ+INV I
Sbjct: 225 AIRVNEKLSKLERKNFKDGSAIKVAVVGCGYAGVELAATISERLQDRGIVQSINVSKNIL 284
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 318
+ GNREAA+KVL++RKVQL+LGY V+ I+R E +
Sbjct: 285 TSAPDGNREAAMKVLTSRKVQLLLGYLVQSIKRASNLE------------------EDEG 326
Query: 319 YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 378
Y LELQPA +GLESQI EAD+VLWTVG+KPLL +EP + LPLNARGQAETDETL
Sbjct: 327 YFLELQPAERGLESQIIEADIVLWTVGAKPLLTKLEPSGPNV--LPLNARGQAETDETLR 384
Query: 379 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 438
VKGHPRIFALGDSS+LRDS G+ LP TAQVAFQ+ADF GWN+WAAIN+RPLLPFRFQNLG
Sbjct: 385 VKGHPRIFALGDSSSLRDSHGKILPTTAQVAFQEADFTGWNIWAAINNRPLLPFRFQNLG 444
Query: 439 EMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDS 498
EMM LGR DAA+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHR KVG+SW KSA+DS
Sbjct: 445 EMMTLGRYDAAISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRFKVGISWFAKSAVDS 504
Query: 499 VALLQSTLTKVLSSS 513
+ALLQS LTKVLS S
Sbjct: 505 IALLQSNLTKVLSGS 519
>gi|240256269|ref|NP_568205.6| NAD(P)H dehydrogenase C1 [Arabidopsis thaliana]
gi|332003960|gb|AED91343.1| NAD(P)H dehydrogenase C1 [Arabidopsis thaliana]
Length = 519
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/495 (65%), Positives = 378/495 (76%), Gaps = 49/495 (9%)
Query: 44 FISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVW 103
++S A +N+SG S++E+A +TY+WPD K+PR+CILGGGFGGLYTALRLESLVW
Sbjct: 49 YLSRAVTNNSGTTE----ISDNETAPRTYSWPDNKRPRVCILGGGFGGLYTALRLESLVW 104
Query: 104 QDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLC 163
+DKKPQV+LVDQSERFVFKPMLYELLSGEVD WEIAPRF+DLL NTG+QF +DRVK L
Sbjct: 105 PEDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIQFLRDRVKTLL 164
Query: 164 PSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
P DHLGVNG GGTVLLESG +EYDWLVL+LGAE KLDVVPGA E AFPF TLED
Sbjct: 165 PCDHLGVNGSEISVTGGTVLLESGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLED 224
Query: 224 ACRVDRKLSELERRNF-------------------------ERLEEKGIVQAINVETTIC 258
A RV+ KLS+LER+NF ERL+++GIVQ+INV I
Sbjct: 225 AIRVNEKLSKLERKNFKDGSAIKVAVVGCGYAGVELAATISERLQDRGIVQSINVSKNIL 284
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 318
+ GNREAA+KVL++RKVQL+LGY V+ I+R E +
Sbjct: 285 TSAPDGNREAAMKVLTSRKVQLLLGYLVQSIKRASNLE------------------EDEG 326
Query: 319 YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 378
Y LELQPA +GLESQI EAD+VLWTVG+KPLL +EP + LPLNARGQAETDETL
Sbjct: 327 YFLELQPAERGLESQIIEADIVLWTVGAKPLLTKLEPSGPNV--LPLNARGQAETDETLR 384
Query: 379 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 438
VKGHPRIFALGDSS+LRDS+G+ LP TAQVAFQ+ADF GWN+WAAIN+RPLLPFRFQNLG
Sbjct: 385 VKGHPRIFALGDSSSLRDSNGKILPTTAQVAFQEADFTGWNIWAAINNRPLLPFRFQNLG 444
Query: 439 EMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDS 498
EMM LGR DAA+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHR V +SW KSA+DS
Sbjct: 445 EMMTLGRYDAAISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRFMVRISWFAKSAVDS 504
Query: 499 VALLQSTLTKVLSSS 513
+ALLQS LTKVLS S
Sbjct: 505 IALLQSNLTKVLSGS 519
>gi|13548332|emb|CAC35879.1| NADH dehydrogenase-like protein [Arabidopsis thaliana]
Length = 513
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 319/495 (64%), Positives = 371/495 (74%), Gaps = 55/495 (11%)
Query: 44 FISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVW 103
++S A +N+SG S++E+A +TY+WPD K+PR+CILGGGFGGLYTALRLESLVW
Sbjct: 49 YLSRAVTNNSGTTE----ISDNETAPRTYSWPDNKRPRVCILGGGFGGLYTALRLESLVW 104
Query: 104 QDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLC 163
+DKKPQV+LVDQSERFVFKPMLYELLSGEVD WEIAPRF+DLL NTG+QF +DRVK L
Sbjct: 105 PEDKKPQVVLVDQSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIQFLRDRVKTLL 164
Query: 164 PSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
P DHLGVNG GGTVLLES LVL+LGAE KLDVVPGA E AFPF TLED
Sbjct: 165 PCDHLGVNGSEISVTGGTVLLESAR------LVLALGAESKLDVVPGAMELAFPFYTLED 218
Query: 224 ACRVDRKLSELERRNF-------------------------ERLEEKGIVQAINVETTIC 258
A RV+ KLS+LER+NF ERL+++GIVQ+INV I
Sbjct: 219 AIRVNEKLSKLERKNFKDGSAIKVAVVGCGYAGVELAATISERLQDRGIVQSINVSKNIL 278
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 318
+ GNREAA+KVL++RKVQL+LGY V+ I+R E +
Sbjct: 279 TSAPDGNREAAMKVLTSRKVQLLLGYLVQSIKRASNLE------------------EDEG 320
Query: 319 YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 378
Y LELQPA +GLESQI EAD+VLWTVG+KPLL +EP + LPLNARGQAETDETL
Sbjct: 321 YFLELQPAERGLESQIIEADIVLWTVGAKPLLTKLEPSGPNV--LPLNARGQAETDETLR 378
Query: 379 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 438
VKGHPRIFALGDSS+LRDS+G+ LP TAQVAFQ+ADF GWN+WAAIN+RPLLPFRFQNLG
Sbjct: 379 VKGHPRIFALGDSSSLRDSNGKILPTTAQVAFQEADFTGWNIWAAINNRPLLPFRFQNLG 438
Query: 439 EMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDS 498
EMM LGR DAA+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTD+H V +S L KSA+DS
Sbjct: 439 EMMTLGRYDAAISPSFIEGLTLEGPIGHAARKLAYLIRLPTDQHLFMVRISCLAKSAVDS 498
Query: 499 VALLQSTLTKVLSSS 513
+ALLQS LTKVLS S
Sbjct: 499 IALLQSNLTKVLSGS 513
>gi|115467068|ref|NP_001057133.1| Os06g0214900 [Oryza sativa Japonica Group]
gi|51090389|dbj|BAD35311.1| putative NADH dehydrogenase [Oryza sativa Japonica Group]
gi|51091939|dbj|BAD35208.1| putative NADH dehydrogenase [Oryza sativa Japonica Group]
gi|113595173|dbj|BAF19047.1| Os06g0214900 [Oryza sativa Japonica Group]
Length = 548
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/479 (62%), Positives = 369/479 (77%), Gaps = 36/479 (7%)
Query: 62 TSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121
+S DE Y+WPDK++PR+CILGGGFGGLYTALRLESLVW +DKKPQV+LVDQS+RFV
Sbjct: 77 SSTDEGPMPIYSWPDKQRPRVCILGGGFGGLYTALRLESLVWPNDKKPQVMLVDQSDRFV 136
Query: 122 FKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT 181
FKPMLYELLSGEVD WEIAP F +LL NT VQF KD VKLL PSDH + +CT GG
Sbjct: 137 FKPMLYELLSGEVDVWEIAPSFTELLKNTSVQFVKDSVKLLRPSDHFRRDSGGSCT-GGV 195
Query: 182 VLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-- 239
V LESG ++EYDWLVL+LGAE K+DVVPG+AE+A PF+TL+DA +V+ +L LERR F
Sbjct: 196 VHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYAIPFTTLDDALKVESQLKMLERRRFGK 255
Query: 240 ------------------------ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA 275
ERL+ KGIVQAINV+TTICP+ PGNR+AALKVL +
Sbjct: 256 NSPDIQVAIVGLGYSGVELAATISERLKNKGIVQAINVQTTICPSAPPGNRDAALKVLES 315
Query: 276 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD--KYILELQPAIKGLESQ 333
R +QL LGYFV CIR + +S ++ A + N D K +LELQPA +G++SQ
Sbjct: 316 RNIQLFLGYFVNCIR------EASASEDSSSMVTDAKEVNGDHKKLLLELQPAQRGIQSQ 369
Query: 334 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 393
+ EAD+VLWTVGS +P ++PP+ + +PLN RGQ ET+ETL VKGHPR FA+GDS+A
Sbjct: 370 VLEADMVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVETEETLQVKGHPRTFAIGDSAA 428
Query: 394 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 453
LRD SG+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGR+DAA++ S
Sbjct: 429 LRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRSDAAITAS 488
Query: 454 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSS 512
F+EG+TL+GP+GH+ARK+ Y +R+PTDEHR+KVG+SW TK+A+DS+A LQ+ ++ +L+S
Sbjct: 489 FIEGLTLEGPLGHAARKIVYCLRMPTDEHRVKVGISWFTKTAVDSLASLQNAVSSMLTS 547
>gi|242095110|ref|XP_002438045.1| hypothetical protein SORBIDRAFT_10g007230 [Sorghum bicolor]
gi|241916268|gb|EER89412.1| hypothetical protein SORBIDRAFT_10g007230 [Sorghum bicolor]
Length = 545
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 305/500 (61%), Positives = 370/500 (74%), Gaps = 35/500 (7%)
Query: 42 NRFISFAASNSSGRNGDLVVTSEDESASQT--YTWPDKKKPRICILGGGFGGLYTALRLE 99
+R AS+ SG G TS DE+ + Y+WPDK++PR+CILGGGFGGLYTALRL+
Sbjct: 53 SRLFRCMASSGSGDGGFAQSTSTDEAVTPLPLYSWPDKQRPRVCILGGGFGGLYTALRLD 112
Query: 100 SLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRV 159
SLVW +DK+PQVLLVDQS++FVFKPMLYELLSGEVD WEIAP F +LL NT VQF +D V
Sbjct: 113 SLVWPNDKRPQVLLVDQSDKFVFKPMLYELLSGEVDVWEIAPSFTELLKNTSVQFVRDSV 172
Query: 160 KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFS 219
KLL PSDH GP GG V LESG ++EYDWLVL+LGAE K+DVVPG+AE+A PF+
Sbjct: 173 KLLRPSDHF-RRGPGEPCTGGVVHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYALPFT 231
Query: 220 TLEDACRVDRKLSELERRNF--------------------------ERLEEKGIVQAINV 253
TLEDA RV+ KL LER+ F ERL++ G V+AINV
Sbjct: 232 TLEDALRVESKLKMLERKRFGKSSPTIEVAIVGLGYSGVELAATISERLKDTGTVKAINV 291
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 313
+TTICPT GNR+AALKVL +R +QL LGYFV CI+ EAS S + D
Sbjct: 292 QTTICPTAPQGNRDAALKVLESRNIQLFLGYFVTCIK-----EASTSDDSSSTVTYAEVD 346
Query: 314 KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAET 373
+ K IL+LQPA +GL+ Q EADLVLWTVGS +P ++PP+ + +PLN RGQ ET
Sbjct: 347 GDYRKLILDLQPAERGLKGQTLEADLVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVET 405
Query: 374 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 433
DETL VKGHPR FA+GDS+ALRD SG+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFR
Sbjct: 406 DETLQVKGHPRTFAIGDSAALRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 465
Query: 434 FQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTK 493
FQNLGEMM LGRNDAAV+ SF+EG+TL+GP+GH+ARKL Y +R+PTDEHR+KVG+SW TK
Sbjct: 466 FQNLGEMMTLGRNDAAVTASFIEGLTLEGPLGHAARKLVYCLRMPTDEHRVKVGISWFTK 525
Query: 494 SAIDSVALLQSTLTKVLSSS 513
+A+D++A +Q+ ++ L+ S
Sbjct: 526 TAVDTLASVQNAVSNTLTGS 545
>gi|218197796|gb|EEC80223.1| hypothetical protein OsI_22150 [Oryza sativa Indica Group]
Length = 548
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/479 (62%), Positives = 367/479 (76%), Gaps = 36/479 (7%)
Query: 62 TSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121
+S DE Y+WPDK++PR+CILGGGFGGLYTAL LESLVW +DKKPQV+LVDQS+RFV
Sbjct: 77 SSTDEGPMPIYSWPDKQRPRVCILGGGFGGLYTALSLESLVWPNDKKPQVMLVDQSDRFV 136
Query: 122 FKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT 181
FKPMLYELLSGEVD WEIAP F +LL NT VQF KD VKLL PSDH + +CT GG
Sbjct: 137 FKPMLYELLSGEVDVWEIAPSFTELLKNTSVQFVKDSVKLLRPSDHFRRDSGGSCT-GGV 195
Query: 182 VLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-- 239
V LESG ++EYDWLVL+LGAE K+DVVPG+AE+A PF+TL+DA +V+ +L LERR F
Sbjct: 196 VHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYAIPFTTLDDALKVESQLKMLERRRFGK 255
Query: 240 ------------------------ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA 275
ERL+ KGIVQAINV+TTICP+ PGNR+AALKVL +
Sbjct: 256 NSPDIQVAIVGLGYSGVELAATISERLKNKGIVQAINVQTTICPSAPPGNRDAALKVLES 315
Query: 276 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD--KYILELQPAIKGLESQ 333
R +QL LGYFV CIR E S ++ A + N D K +LELQPA +G++SQ
Sbjct: 316 RNIQLFLGYFVNCIREASASEDSS------SMVTDAKEVNGDHKKLLLELQPAQRGIQSQ 369
Query: 334 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 393
+ EAD+VLWTVGS +P ++PP+ + +PLN RGQ ET+ETL VKGHPR FA+GDS+A
Sbjct: 370 VLEADMVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVETEETLQVKGHPRTFAIGDSAA 428
Query: 394 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 453
LRD SG+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGR+DAA++ S
Sbjct: 429 LRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRSDAAITAS 488
Query: 454 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSS 512
F+EG+TL+GP+GH+ARK+ Y +R+PTDEHR+KVG+SW TK+A+DS+A LQ+ ++ +L+S
Sbjct: 489 FIEGLTLEGPLGHAARKIVYCLRMPTDEHRVKVGISWFTKTAVDSLASLQNAVSSMLTS 547
>gi|226510558|ref|NP_001148870.1| LOC100282489 [Zea mays]
gi|195622788|gb|ACG33224.1| NADH dehydrogenase [Zea mays]
Length = 546
Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust.
Identities = 304/494 (61%), Positives = 371/494 (75%), Gaps = 37/494 (7%)
Query: 49 ASNSSGRNGDLVVTS-EDESASQ--TYTWPDKKKPRICILGGGFGGLYTALRLESLVWQD 105
AS+ SG +GD ++ DE+A+ Y+WPDK++PR+CILGGGFGGLYTALRLESLVW +
Sbjct: 60 ASSGSG-DGDFAQSTLTDEAAAPFPLYSWPDKQRPRVCILGGGFGGLYTALRLESLVWPN 118
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
DK+PQVLLVDQS++FVFKPMLYELLSGEVD WEIAP F +LL NT VQF +D VKLL PS
Sbjct: 119 DKRPQVLLVDQSDKFVFKPMLYELLSGEVDVWEIAPSFTELLKNTSVQFVRDSVKLLRPS 178
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
DHL CT GG V LESG ++EYDWLVL+LGAE K+DVVPG+AE+A PF+TLEDA
Sbjct: 179 DHLRRKPGEPCT-GGVVHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYALPFTTLEDAL 237
Query: 226 RVDRKLSELERRNF--------------------------ERLEEKGIVQAINVETTICP 259
RV+ KL LER+ F ERL+ G V+AINV+TT+CP
Sbjct: 238 RVESKLKMLERKRFGKSSPTIEVAIVGLGYSGVELAATISERLKNTGTVKAINVQTTVCP 297
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 319
T GNR+AALKVL +R +QL+LGYFV CI+ EA S + D + K
Sbjct: 298 TAPQGNRDAALKVLESRNIQLLLGYFVSCIK-----EAPTSDDSSSTVTYSEVDGDHRKL 352
Query: 320 ILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCV 379
IL+LQPA +GL+ Q +ADLVLWTVGS +P ++PP+ + +PLN RGQ ET+ETL V
Sbjct: 353 ILDLQPAERGLKGQTLDADLVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVETEETLQV 411
Query: 380 KGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGE 439
KGHPR FA+GDS+ALRD SG+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGE
Sbjct: 412 KGHPRTFAIGDSAALRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGE 471
Query: 440 MMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSV 499
MM LGRNDAAV+ SF+EG+TL+GP+GH+ARKL Y +R+PTDEHR+KVG+SW TK+AIDS+
Sbjct: 472 MMTLGRNDAAVTASFIEGLTLEGPLGHAARKLVYCLRMPTDEHRVKVGISWFTKAAIDSL 531
Query: 500 ALLQSTLTKVLSSS 513
A +Q+ ++ L+ S
Sbjct: 532 ASVQNAVSNTLTGS 545
>gi|413952684|gb|AFW85333.1| NADH dehydrogenase [Zea mays]
Length = 545
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 305/493 (61%), Positives = 368/493 (74%), Gaps = 36/493 (7%)
Query: 49 ASNSSGRNGDLV-VTSEDESAS-QTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDD 106
AS+ SG +GD T DE+A Y+WPDK++PR+CILGGGFGGLYTALRLESLVW +D
Sbjct: 60 ASSGSG-DGDFARSTLTDEAAPFPLYSWPDKQRPRVCILGGGFGGLYTALRLESLVWPND 118
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+PQVLLVDQS++FVFKPMLYELLSGEVD WEIAP F +LL NT VQF +D VKLL PSD
Sbjct: 119 KRPQVLLVDQSDKFVFKPMLYELLSGEVDIWEIAPSFTELLKNTSVQFVRDSVKLLRPSD 178
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
HL CT GG V LESG ++EYDWLVL+LGAE K+DVVPG+AE+A PF+TLEDA R
Sbjct: 179 HLRRKPGEPCT-GGVVHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYALPFTTLEDALR 237
Query: 227 VDRKLSELERRNF--------------------------ERLEEKGIVQAINVETTICPT 260
V+ KL LER+ F ERL+ G V+AINV+TT+CPT
Sbjct: 238 VESKLKMLERKRFGKSSPTIEVAIVGLGYSGVELAATISERLKNTGTVKAINVQTTVCPT 297
Query: 261 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI 320
GNR+AALKVL +R +QL LGYFV CI+ EA S + D + K I
Sbjct: 298 APQGNRDAALKVLESRNIQLFLGYFVSCIK-----EAPTSDESSSTVTYSEVDGDHRKLI 352
Query: 321 LELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVK 380
L+LQPA +GL+ Q +ADLVLWTVGS +P ++PP+ + +PLN RGQ ET+ETL VK
Sbjct: 353 LDLQPAERGLKGQTLDADLVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVETEETLQVK 411
Query: 381 GHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEM 440
GHPR FA+GDS+ALRD SG+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEM
Sbjct: 412 GHPRTFAIGDSAALRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEM 471
Query: 441 MILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 500
M LGRNDAAV+ SF+EG+TL+GP+GH+ARKL Y +R+PTDEHR+KVG+SW TK+AIDS+A
Sbjct: 472 MTLGRNDAAVTASFIEGLTLEGPLGHAARKLVYCLRMPTDEHRVKVGISWFTKAAIDSLA 531
Query: 501 LLQSTLTKVLSSS 513
+Q+ ++ L+ S
Sbjct: 532 SVQNAVSNTLTGS 544
>gi|357124831|ref|XP_003564100.1| PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like
[Brachypodium distachyon]
Length = 548
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 302/491 (61%), Positives = 368/491 (74%), Gaps = 32/491 (6%)
Query: 49 ASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKK 108
AS+S+G G +S DE+ Y+WPDK++PR+CILGGGFGGLYTALRLESLVW + K
Sbjct: 64 ASSSTGNGGFSRPSSTDETPVPVYSWPDKQRPRVCILGGGFGGLYTALRLESLVWPGNNK 123
Query: 109 PQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHL 168
PQVLLVDQS+RFVFKPMLYELLSGEVD WEIAP F +LL NT VQF KD VKLL PSDHL
Sbjct: 124 PQVLLVDQSDRFVFKPMLYELLSGEVDVWEIAPYFTELLKNTSVQFVKDSVKLLRPSDHL 183
Query: 169 GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD 228
+CT GG V LESG ++EYDWLVL+LGAE K+DVVPG+AE A PF+TLE A +V+
Sbjct: 184 RREPGGSCT-GGVVHLESGTVIEYDWLVLALGAEAKIDVVPGSAEHAIPFTTLEHALKVE 242
Query: 229 RKLSELERRNF--------------------------ERLEEKGIVQAINVETTICPTGT 262
+L LERR F ERL+ G V+AINV+TTICP+
Sbjct: 243 SELKMLERRRFGKSSPPIEVAIVGLGYSGVELAATISERLKNTGTVKAINVQTTICPSAP 302
Query: 263 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE 322
PGNR+AALKVL ++ +QL LGY V C+R EF AS S A A + K ++E
Sbjct: 303 PGNRDAALKVLESQNIQLFLGYSVSCVR---EFYAS-DDSSSMATDEKEAGGDHKKLLVE 358
Query: 323 LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGH 382
LQPA +GL+SQ+ EADLVLWTVGS +P ++PP+ + +PLN RGQ ET+ETL VKGH
Sbjct: 359 LQPAQRGLQSQVLEADLVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVETEETLQVKGH 417
Query: 383 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 442
PR FA+GDS+ALRD SG+ LPA AQVAFQQADFAGWN+WAAINDRPLLPFRFQNLGEMM
Sbjct: 418 PRTFAIGDSAALRDPSGKFLPANAQVAFQQADFAGWNIWAAINDRPLLPFRFQNLGEMMT 477
Query: 443 LGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALL 502
LGRNDAA++ SF+EG+TL+GP+GH+ARKL Y +R+PTDEHR+KVG+SW TK A+DS+A L
Sbjct: 478 LGRNDAAITASFIEGLTLEGPLGHAARKLVYCLRMPTDEHRVKVGLSWFTKGAVDSLASL 537
Query: 503 QSTLTKVLSSS 513
Q+ ++ +++SS
Sbjct: 538 QNAVSNMIASS 548
>gi|222635195|gb|EEE65327.1| hypothetical protein OsJ_20585 [Oryza sativa Japonica Group]
Length = 877
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 298/479 (62%), Positives = 365/479 (76%), Gaps = 36/479 (7%)
Query: 62 TSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121
+S DE Y+WPDK++PR+CILGGGFGGLYTALRLESLVW +DKKPQV+LVDQS+RFV
Sbjct: 77 SSTDEGPMPIYSWPDKQRPRVCILGGGFGGLYTALRLESLVWPNDKKPQVMLVDQSDRFV 136
Query: 122 FKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT 181
FKPMLYELLSGEVD WEIAP F +LL NT VQF KD VKLL PSDH + +CT GG
Sbjct: 137 FKPMLYELLSGEVDVWEIAPSFTELLKNTSVQFVKDSVKLLRPSDHFRRDSGGSCT-GGV 195
Query: 182 VLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-- 239
V LESG ++EYDWLVL+LGAE K+DVVPG+AE+A PF+TL+DA +V+ +L LERR F
Sbjct: 196 VHLESGTVIEYDWLVLALGAEAKIDVVPGSAEYAIPFTTLDDALKVESQLKMLERRRFGK 255
Query: 240 ------------------------ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA 275
ERL+ KGIVQAINV+TTICP+ PGNR+AALKVL +
Sbjct: 256 NSPDIQVAIVGLGYSGVELAATISERLKNKGIVQAINVQTTICPSAPPGNRDAALKVLES 315
Query: 276 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD--KYILELQPAIKGLESQ 333
R +QL LGYFV CIR + +S ++ A + N D K +LELQPA +G++SQ
Sbjct: 316 RNIQLFLGYFVNCIR------EASASEDSSSMVTDAKEVNGDHKKLLLELQPAQRGIQSQ 369
Query: 334 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 393
+ EAD+VLWTVGS +P ++PP+ + +PLN RGQ ET+ETL VKGHPR FA+GDS+A
Sbjct: 370 VLEADMVLWTVGSTSQIPRLQPPDAP-YVIPLNGRGQVETEETLQVKGHPRTFAIGDSAA 428
Query: 394 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 453
LRD SG+ LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGR+DAA++ S
Sbjct: 429 LRDPSGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRSDAAITAS 488
Query: 454 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSS 512
F+EG+TL+GP+GH+ARK+ Y +R+PTDEHR+KVG+SW TK+A+DS+A LQ+ + S
Sbjct: 489 FIEGLTLEGPLGHAARKIVYCLRMPTDEHRVKVGISWFTKTAVDSLASLQNAVANSFPS 547
>gi|302790079|ref|XP_002976807.1| hypothetical protein SELMODRAFT_268023 [Selaginella moellendorffii]
gi|300155285|gb|EFJ21917.1| hypothetical protein SELMODRAFT_268023 [Selaginella moellendorffii]
Length = 536
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 273/497 (54%), Positives = 331/497 (66%), Gaps = 58/497 (11%)
Query: 49 ASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKK 108
+S S+G + D TSE + Y W D+K PRICILGGGFGGLYTALRL+SLVW +K+
Sbjct: 66 SSKSAGGSDDRSTTSE--KSLNPYVWSDRKSPRICILGGGFGGLYTALRLDSLVWTPEKR 123
Query: 109 PQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHL 168
PQ+LLVDQSERFVFKPMLYELLS EVD WE+AP FADLLA+T ++F KD VK + P D +
Sbjct: 124 PQILLVDQSERFVFKPMLYELLSKEVDVWEVAPLFADLLASTTIRFLKDNVKSVSPFDAV 183
Query: 169 G-VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
N + GG V LESG+ VEYDWLVL+LGAE K+D+VPGA E A PFSTLEDA R+
Sbjct: 184 ADDNKSSPSSIGGKVYLESGIQVEYDWLVLALGAETKMDMVPGALEHALPFSTLEDALRL 243
Query: 228 DRKLS--------------------------ELERRNFERLEEKGIVQAINVETTICPTG 261
+++L EL ERL E+G VQ I+V + ICP+
Sbjct: 244 EKRLEELERERFGPKQLPIDVAVVGSGYCGIELSATVAERLGERGRVQVIDVNSEICPSA 303
Query: 262 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYIL 321
GNRE A KVLS+R V+L LGYFV I +PE K + + +L
Sbjct: 304 PTGNREKASKVLSSRNVKLELGYFVTNIAL-----KDSNEPE----------KKNKRVVL 348
Query: 322 ELQPA-----IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 376
EL+PA K S EADLVLWTVG + L+P P N RGQ +TDET
Sbjct: 349 ELKPANSRNTRKAPPSTFLEADLVLWTVGGRALVPKA---------FPTNGRGQTDTDET 399
Query: 377 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 436
L VKGHPRIFA+GDS+ +DSSGR L TAQVA QQAD+AGWNLWAAIN+RPLLPFR+Q+
Sbjct: 400 LRVKGHPRIFAIGDSAGNKDSSGRLLQTTAQVALQQADYAGWNLWAAINNRPLLPFRYQH 459
Query: 437 LGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 496
LGEMM LGR + AV+PSF E +TLDG +GH+ARKLAYL RLPT+EHR+KVGVSWL KSA+
Sbjct: 460 LGEMMTLGRYNGAVTPSFFEDITLDGVLGHTARKLAYLYRLPTNEHRVKVGVSWLAKSAV 519
Query: 497 DSVALLQSTLTKVLSSS 513
D+ + +Q T+ + S
Sbjct: 520 DAFSYVQGTVLSLAQKS 536
>gi|302797549|ref|XP_002980535.1| hypothetical protein SELMODRAFT_178273 [Selaginella moellendorffii]
gi|300151541|gb|EFJ18186.1| hypothetical protein SELMODRAFT_178273 [Selaginella moellendorffii]
Length = 541
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/506 (54%), Positives = 331/506 (65%), Gaps = 67/506 (13%)
Query: 49 ASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKK 108
+S S+G + D TSE Y W D+K PRICILGGGFGGLYTALRL+SLVW +K+
Sbjct: 62 SSQSAGGSDDRSTTSE--KFLNPYVWSDRKSPRICILGGGFGGLYTALRLDSLVWTPEKR 119
Query: 109 PQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHL 168
PQ+LLVDQSERFVFKPMLYELLS EVD WE+AP FADLLA+T ++F KD VK + P D +
Sbjct: 120 PQILLVDQSERFVFKPMLYELLSKEVDVWEVAPLFADLLASTTIRFLKDNVKSVSPFDAV 179
Query: 169 G-VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
N A + GG V LESG+ VEYDWLVL+LGAE K+D+VPGA E A PFSTLEDA R+
Sbjct: 180 ADDNKSSASSIGGKVYLESGIQVEYDWLVLALGAETKMDMVPGALEHALPFSTLEDALRL 239
Query: 228 DRKLS--------------------------ELERRNFERLEEKGIVQAINVETTICPTG 261
+++L EL ERL E+G VQ I+V + ICP+
Sbjct: 240 EKRLEELERERFGPKQLPIDVAVVGSGYCGIELSATVAERLGERGRVQVIDVNSEICPSA 299
Query: 262 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYIL 321
GNRE A +VLS+R V+L LGYFV I +PE K + + +L
Sbjct: 300 PTGNREKASEVLSSRNVKLELGYFVTNIAL-----KDSNEPE----------KKNKRVVL 344
Query: 322 ELQPA-----IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 376
EL+PA K S EADLVLWTVG + L+P P N RGQ +TDET
Sbjct: 345 ELKPANSRNTRKAPPSTFLEADLVLWTVGGRALVPKA---------FPTNGRGQTDTDET 395
Query: 377 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR--- 433
L VKGHPRIFA+GDS+ +DSSGR L TAQVA QQAD+AGWNLWAAIN+RPLLPFR
Sbjct: 396 LRVKGHPRIFAIGDSAGNKDSSGRLLQTTAQVALQQADYAGWNLWAAINNRPLLPFRLES 455
Query: 434 ------FQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVG 487
+Q+LGEMM LGR + AV+PSF E +TLDG +GH+ARKLAYL RLPT+EHRLKVG
Sbjct: 456 YCPTLLYQHLGEMMTLGRYNGAVTPSFFEDITLDGVLGHTARKLAYLYRLPTNEHRLKVG 515
Query: 488 VSWLTKSAIDSVALLQSTLTKVLSSS 513
VSWL KSA+D+ + +Q T+ + S
Sbjct: 516 VSWLAKSAVDAFSYVQGTVLSLAQKS 541
>gi|168031551|ref|XP_001768284.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680462|gb|EDQ66898.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 455
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/469 (53%), Positives = 319/469 (68%), Gaps = 59/469 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++PRICILGGGFGGLYTALRLESL+W DKKPQ++LVDQS+RFVFKP+LYEL+S E D W
Sbjct: 1 QRPRICILGGGFGGLYTALRLESLIWPPDKKPQIVLVDQSDRFVFKPLLYELVSKEADEW 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTH-----GGTVLLESGLIVEY 192
E+AP F +LLANT ++F +D V+ + PSD VNG A GG+V L SG+ V+Y
Sbjct: 61 EVAPSFKELLANTNIRFCQDTVRSIQPSD--AVNGTPALATASRDVGGSVYLSSGMQVDY 118
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN-------------- 238
DWLVLSLG+EP+++VVPGA+E A PFSTLEDA VDR+L+ LE
Sbjct: 119 DWLVLSLGSEPRMNVVPGASELALPFSTLEDALEVDRRLTTLENEASVYAPIEVVVVGSG 178
Query: 239 ----------FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 288
ERL +KG V+ I++ + I + G REAA +VLS+R V+L+LGYFV
Sbjct: 179 YSGVELSATLAERLGQKGTVKVIDMASDIVASAPAGTREAASRVLSSRNVELMLGYFVAN 238
Query: 289 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-----QPAIKGLESQIFEADLVLWT 343
+RR AD++S++ LEL +P+ + Q EADLVLWT
Sbjct: 239 MRR--------------------ADESSNRIRLELGQPSQRPSRRAPPGQTIEADLVLWT 278
Query: 344 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 403
G+K +P E P+N RGQA+TDE L V+G+PRIFALGDS+ D +G+ LP
Sbjct: 279 AGTKVSIPPSETQAG-YQSFPINGRGQADTDEMLRVRGYPRIFALGDSAGATDGNGKQLP 337
Query: 404 ATAQVAFQQADFAGWNLWAAINDRPLLPFRF--QNLGEMMILGRNDAAVSPSFVEGVTLD 461
+TAQVAFQQAD+ GWNLWAAIN+RPLLPFRF Q+LGEMM LG ND +VS SF+EGVTLD
Sbjct: 338 STAQVAFQQADYVGWNLWAAINNRPLLPFRFVYQHLGEMMTLGTNDGSVSLSFIEGVTLD 397
Query: 462 GPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVL 510
G +GH ARKLAYL RLPT+EHR +VG+SWL K+ + +V+ LQ T++ L
Sbjct: 398 GFLGHQARKLAYLYRLPTNEHRARVGLSWLAKTTVSTVSYLQETISNSL 446
>gi|357520141|ref|XP_003630359.1| hypothetical protein MTR_8g094730 [Medicago truncatula]
gi|355524381|gb|AET04835.1| hypothetical protein MTR_8g094730 [Medicago truncatula]
Length = 346
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 235/347 (67%), Positives = 273/347 (78%), Gaps = 36/347 (10%)
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF------------ 239
+ WLVL+LGAE KLDVVPGA EFA PFSTLEDA +V+ +L+ LER+ F
Sbjct: 6 FYWLVLALGAEAKLDVVPGATEFAIPFSTLEDARKVNNRLTILERKTFGKDYQISVAIVG 65
Query: 240 -------------ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 286
ERL+ +GIV+AINV+T ICPT PGNREAALKVLS+RKV+L+LGYFV
Sbjct: 66 CGYSGVELAATVAERLQNRGIVRAINVDTMICPTAPPGNREAALKVLSSRKVELLLGYFV 125
Query: 287 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS 346
CIR+ E E+S N + +KYILELQPA +G++S+I EADLVLWTVGS
Sbjct: 126 NCIRKASESESS----------NTPKGLDFEKYILELQPAERGMQSKIIEADLVLWTVGS 175
Query: 347 KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA 406
KP LPH+E + +PLNARGQAETDETL VKGHPRIF+LGDSSALRDS+GR LPATA
Sbjct: 176 KPPLPHLEYSDVPFV-IPLNARGQAETDETLRVKGHPRIFSLGDSSALRDSNGRILPATA 234
Query: 407 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 466
QVAFQQADF GWNLWAAIN RPLLPFRFQNLGEMM LGRNDAA+SPSFV+G+TL+GP+GH
Sbjct: 235 QVAFQQADFTGWNLWAAINGRPLLPFRFQNLGEMMTLGRNDAAISPSFVDGLTLEGPVGH 294
Query: 467 SARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 513
+ARK+AYL+RLPTDEHRLKVG+SW TKSAIDSV+LLQSTL+KVLS S
Sbjct: 295 AARKIAYLMRLPTDEHRLKVGISWFTKSAIDSVSLLQSTLSKVLSGS 341
>gi|326508716|dbj|BAJ95880.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 362
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/340 (58%), Positives = 245/340 (72%), Gaps = 35/340 (10%)
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF--------------- 239
LVL+LGAE K+DVVPG+AE+A PF+TLE A +V+ +L LERR F
Sbjct: 27 LVLALGAEAKIDVVPGSAEYALPFTTLEHALKVESELKMLERRRFGKNSPSIQVAVVGMG 86
Query: 240 -----------ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 288
ERL+ G V+AIN +TTICP PGNREAALKVL ++ +QL LGY V C
Sbjct: 87 YSGVELAATISERLKSTGTVKAINFQTTICPNAPPGNREAALKVLESQNIQLFLGYSVNC 146
Query: 289 IRRVGEFEASVKQPESGAIPNIAADKNSD--KYILELQPAIKGLESQIFEADLVLWTVGS 346
IR V E +SG + A + D K +LELQ A +GL+SQ+ EADLVLWTVGS
Sbjct: 147 IREVYASE------DSGGMVADAKEAGGDDKKLVLELQAAQRGLQSQVLEADLVLWTVGS 200
Query: 347 KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA 406
+ + ++PP+ + +PLN RGQ ET+ETL VKGHPR FA+GDS+ALRD SG+ LPA A
Sbjct: 201 QSQILRLQPPDAP-YVIPLNGRGQVETEETLQVKGHPRTFAIGDSAALRDPSGKFLPANA 259
Query: 407 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 466
QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM LGRNDAA++ +F+EG+TL+GPIGH
Sbjct: 260 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAAITANFIEGLTLEGPIGH 319
Query: 467 SARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTL 506
+ARKL Y +R+PTDEHR+KVG+SW K A+DS+A LQ +
Sbjct: 320 AARKLVYCLRMPTDEHRVKVGISWFAKGAVDSLASLQDAV 359
>gi|223944659|gb|ACN26413.1| unknown [Zea mays]
Length = 302
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 175/281 (62%), Positives = 216/281 (76%), Gaps = 6/281 (2%)
Query: 233 ELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 292
EL ERL+ G V+AINV+TT+CPT GNR+AALKVL +R +QL LGYFV CI+
Sbjct: 27 ELAATISERLKNTGTVKAINVQTTVCPTAPQGNRDAALKVLESRNIQLFLGYFVSCIK-- 84
Query: 293 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 352
EA S + D + K IL+LQPA +GL+ Q +ADLVLWTVGS +P
Sbjct: 85 ---EAPTSDESSSTVTYSEVDGDHRKLILDLQPAERGLKGQTLDADLVLWTVGSTSQIPR 141
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
++PP+ + +PLN RGQ ET+ETL VKGHPR FA+GDS+ALRD SG+ LPATAQVAFQQ
Sbjct: 142 LQPPDAP-YVIPLNGRGQVETEETLQVKGHPRTFAIGDSAALRDPSGKLLPATAQVAFQQ 200
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
ADFAGWNLWAAINDRPLLPFRFQNLGEMM LGRNDAAV+ SF+EG+TL+GP+GH+ARKL
Sbjct: 201 ADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAAVTASFIEGLTLEGPLGHAARKLV 260
Query: 473 YLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 513
Y +R+PTDEHR+KVG+SW TK+AIDS+A +Q+ ++ L+ S
Sbjct: 261 YCLRMPTDEHRVKVGISWFTKAAIDSLASVQNAVSNTLTGS 301
>gi|332707212|ref|ZP_08427265.1| NADH dehydrogenase, FAD-containing subunit [Moorea producens 3L]
gi|332353946|gb|EGJ33433.1| NADH dehydrogenase, FAD-containing subunit [Moorea producens 3L]
Length = 398
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 188/445 (42%), Positives = 255/445 (57%), Gaps = 78/445 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K+ RICILGGGFGGLYTALRL L W+ ++P+++LVDQ++RF+F P+LYEL++ E+
Sbjct: 3 KQPARICILGGGFGGLYTALRLSQLPWEKPQQPEIVLVDQNDRFLFSPLLYELITSELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP + +LLANTGV+F + V G++ V LE+G +YD LV
Sbjct: 63 WEIAPPYEELLANTGVRFTQAAVA--------GID-----VEQQQVQLETGSEFQYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF----------------- 239
L+LG E L+ +PG AE+A PF T+ DA ++ +L LE +
Sbjct: 110 LALGGETPLEQLPGVAEYAIPFRTITDAYHLEERLRILEESDTDKIRIAIVGAGYSGVEL 169
Query: 240 -----ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
ERL E+G ++ I + I T T NREAA K L+ +KV + +
Sbjct: 170 ACHLAERLGERGRLRLIELGDVILRTSTDFNREAARKALNEQKVWI-------------D 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
E SV+ +I D S Y KG + DLVLWTVG++ V
Sbjct: 217 LETSVE--------SIGPDTISLLY--------KG-QVDTIPVDLVLWTVGTR-----VT 254
Query: 355 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
P + LPL N RGQ T L HP IFALGD + RD+ +P+P TAQ AFQQ
Sbjct: 255 PV---VRSLPLKQNHRGQLTTTHRLQAVDHPEIFALGDLADCRDADNQPVPNTAQSAFQQ 311
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
AD+ GWN+WA++ RPLLPFR+Q LGEMM LG+++A +S G+ LDGP+ H R+LA
Sbjct: 312 ADYVGWNVWASLTGRPLLPFRYQQLGEMMTLGKDNATLSGL---GLKLDGPLAHIVRRLA 368
Query: 473 YLIRLPTDEHRLKVGVSWLTKSAID 497
YL R+PT EH+LKVG++W+T+ D
Sbjct: 369 YLYRMPTIEHQLKVGMNWITRPLTD 393
>gi|434407882|ref|YP_007150767.1| NADH dehydrogenase, FAD-containing subunit [Cylindrospermum
stagnale PCC 7417]
gi|428262137|gb|AFZ28087.1| NADH dehydrogenase, FAD-containing subunit [Cylindrospermum
stagnale PCC 7417]
Length = 397
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 191/450 (42%), Positives = 257/450 (57%), Gaps = 82/450 (18%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RICILGGGFGGLYTALRL L W+ KP+++LVDQS+RF+F P+LYELL+GE+
Sbjct: 3 QQPARICILGGGFGGLYTALRLSQLPWEATPKPEIILVDQSDRFLFSPLLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LL TGV+F H G+ + V L+ G + D LV
Sbjct: 63 WEIAPPFEELLEGTGVRF------------HQGIVSEIDIDQR-RVQLQDGTKIICDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE---------------- 240
L+LG E LD+VPGAA++A+ F T+ DA R++ +L LE E
Sbjct: 110 LTLGGETPLDLVPGAADYAYSFRTITDAYRLEERLRVLEESAPEKIRVAIVGAGYSGVEL 169
Query: 241 ------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
R+ EKG + I + I T NREAA K L A+ G F+ +
Sbjct: 170 ACKLADRIGEKGRFRLIEIGDQILRTSPEFNREAAKKALDAK------GVFI-------D 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPLLPH 352
E V +IA D S Y ++Q+ DLV+WTVG++
Sbjct: 217 LETKVL--------SIAQDTISLDY-----------KNQVDTIPVDLVIWTVGTR----- 252
Query: 353 VEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
V P + LPL N RGQ T TL V HP IFALGD + RD+ G+ +PATAQVAF
Sbjct: 253 VAPV---IKTLPLKQNQRGQISTTPTLQVLDHPDIFALGDLADSRDAEGQQVPATAQVAF 309
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
QQAD+A WN+WA++ +RPLLPFR+Q LGEMM LG ++A ++ G+ LDGP+ + AR+
Sbjct: 310 QQADYAAWNIWASLTNRPLLPFRYQQLGEMMTLGTDNATLTSL---GIKLDGPLAYVARR 366
Query: 471 LAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 500
LAYL RLPT +H+LKVG +WL + I++++
Sbjct: 367 LAYLYRLPTLDHKLKVGFNWLVRPIIETLS 396
>gi|119511098|ref|ZP_01630217.1| NADH dehydrogenase [Nodularia spumigena CCY9414]
gi|119464269|gb|EAW45187.1| NADH dehydrogenase [Nodularia spumigena CCY9414]
Length = 396
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 189/448 (42%), Positives = 257/448 (57%), Gaps = 78/448 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ PRICILGGGFGGLYTALRL L W++ +KP+++LVDQS+RF+F P+LYELL+GE+
Sbjct: 3 EQTPRICILGGGFGGLYTALRLSQLPWENGEKPEIVLVDQSDRFIFAPLLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LL NTGV+F C + G++ H L+ G + YD LV
Sbjct: 63 WEIAPPFEELLQNTGVRF--------CQAIVSGIDTEQKRVH-----LQEGTEIAYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE---------------- 240
L+LG E LD+VPGA A+PF + DA R++ +L LE E
Sbjct: 110 LALGGETPLDMVPGAISHAYPFRNITDAYRLEERLRVLEESKAEKIRVAIVGAGYSGVEL 169
Query: 241 ------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
RL E+G + I + I T NREAA K L A+KV L +
Sbjct: 170 ACKLADRLGERGRFRLIQIGDQILRTSPDFNREAAKKALDAKKVFL-------------D 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPLLPH 352
E V+ ++ D S +Y ++Q+ DLV+WTVG++
Sbjct: 217 LETKVE--------SVGQDTISLEY-----------KNQVDTIPVDLVIWTVGTR----- 252
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
V P L L N RGQ T TL V HP IFALGD + D+ G+ +PATAQVAFQQ
Sbjct: 253 VAPVVKTLA-LKQNQRGQITTTPTLQVLEHPEIFALGDLADCCDAEGQKVPATAQVAFQQ 311
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
AD+ WN+WA+++DRPLLPFR+Q LGEMM LG+++A ++ G+ LDG + AR+LA
Sbjct: 312 ADYTAWNIWASLSDRPLLPFRYQQLGEMMALGKDNATLTGL---GIKLDGSFAYLARRLA 368
Query: 473 YLIRLPTDEHRLKVGVSWLTKSAIDSVA 500
YL R+PT +H+LKVG +WL + ID+++
Sbjct: 369 YLYRMPTLDHQLKVGFNWLVRPIIDTLS 396
>gi|443312966|ref|ZP_21042580.1| NADH dehydrogenase, FAD-containing subunit [Synechocystis sp. PCC
7509]
gi|442777116|gb|ELR87395.1| NADH dehydrogenase, FAD-containing subunit [Synechocystis sp. PCC
7509]
Length = 397
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 181/448 (40%), Positives = 249/448 (55%), Gaps = 79/448 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RICILGGGFGGLYTALRL L W+ +KP+++LVD+S+RF+F P LYELL+GE+
Sbjct: 4 QQPDRICILGGGFGGLYTALRLSQLPWEA-QKPEIVLVDKSDRFLFSPFLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F ++LANTGV+ + V + + + V L G + YD LV
Sbjct: 63 WEIAPPFVEILANTGVRCLQGEVADINTDEQI-------------VYLLDGSEIPYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF----------------- 239
L+LG E LD+VPGA+ +AFPF T+ DA ++++L LE
Sbjct: 110 LALGGETPLDMVPGASSYAFPFRTVSDAYSLEQRLRMLEETQTDKIRVAIVGAGYSGVEL 169
Query: 240 -----ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
ERL+E+G ++ I + I T NR A K L AR V + L + I
Sbjct: 170 ACKLSERLKERGRLRLIELSDQILRTSPEFNRTTATKALEARGVWVDLETKIESI----- 224
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
SD LE + + + DLV+WTVG++
Sbjct: 225 --------------------TSDAIALEYKNQVDTIP-----VDLVIWTVGTRV------ 253
Query: 355 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
N + LPL N RGQ T TL V HP IFALGD + D+ G+ +P TAQ AFQQ
Sbjct: 254 --NPVVQSLPLKHNGRGQITTTTTLQVVDHPEIFALGDLADCIDADGKQVPTTAQSAFQQ 311
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
AD+ GWN+WA++ +RPLLPFR+Q+LGEMM LG N A + G+ LDG + + AR+LA
Sbjct: 312 ADYTGWNIWASLTNRPLLPFRYQHLGEMMTLGTNSATFAGL---GIKLDGSLAYVARRLA 368
Query: 473 YLIRLPTDEHRLKVGVSWLTKSAIDSVA 500
YL R+PT H+LKVG++W+T+ +D++
Sbjct: 369 YLYRMPTLGHQLKVGLNWITQPIVDNLT 396
>gi|440681608|ref|YP_007156403.1| NADH dehydrogenase [Anabaena cylindrica PCC 7122]
gi|428678727|gb|AFZ57493.1| NADH dehydrogenase [Anabaena cylindrica PCC 7122]
Length = 397
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 188/442 (42%), Positives = 247/442 (55%), Gaps = 74/442 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL L W+ KP+++LVDQS+RF+F P LYELL+GE+ WEIA
Sbjct: 7 RICILGGGFGGLYTALRLSQLPWESTPKPEIILVDQSDRFLFSPFLYELLTGELQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + +LL NTGV+F + V + + L+ + YD LVL+LG
Sbjct: 67 PPYQELLQNTGVRFHQATVSEIDIDKQ-------------RIQLQDSPGISYDRLVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVD---RKLSELERRNF------------------ 239
E LD+VPGAA A+PF T+ DA R++ R L EL+
Sbjct: 114 GETPLDLVPGAATHAYPFRTITDAYRLEEHLRVLKELDTDKIRVAIVGAGYSGVELACKL 173
Query: 240 -ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
+R+ EKG + I + I T NREAA K L AR V + L V I GE S
Sbjct: 174 ADRIGEKGRFRLIEISDQILRTSPEFNREAAKKALDARSVFIDLETKVVSI---GEKTIS 230
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
++ KN I DLV+WTVG++ V P
Sbjct: 231 LEY------------KNQVDEI---------------PVDLVIWTVGTR-----VAPVVK 258
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
LH L N RGQ T TL V HP IFALGD + D+ G+ +PATAQVAFQQAD+ W
Sbjct: 259 TLH-LKQNQRGQITTTPTLQVLEHPEIFALGDLADCIDAEGKQVPATAQVAFQQADYTAW 317
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
N+WA++ +RPLLPFR+Q LGEMM LG ++A ++ G+ LDG + + AR+LAYL RLP
Sbjct: 318 NIWASLTNRPLLPFRYQQLGEMMALGIDNATLTGL---GIKLDGSLAYVARRLAYLYRLP 374
Query: 479 TDEHRLKVGVSWLTKSAIDSVA 500
T +H+LKVG +WL + I++++
Sbjct: 375 TLDHQLKVGFNWLVRPIIETLS 396
>gi|434387958|ref|YP_007098569.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
gi|428018948|gb|AFY95042.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
Length = 395
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 181/435 (41%), Positives = 242/435 (55%), Gaps = 74/435 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALR L W+ +KP++ L+D+ FVF P+LYEL++GE+ WEIA
Sbjct: 6 RICILGGGFGGLYTALRANQLAWEPGQKPEITLIDRHPNFVFTPLLYELITGEMQGWEIA 65
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P FA+LL T ++F + VK + TV LE + YD LVLSLG
Sbjct: 66 PPFAELLKGTDIRFVQGSVKQIDSEQK-------------TVRLEDDTEIAYDRLVLSLG 112
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-------------------- 240
+E D VPG AE A F +LEDA ++D KL LE N E
Sbjct: 113 SETPADSVPGVAEHAIAFRSLEDAYKLDTKLRLLEASNAERIRVAIVGAGYTGVEIACKL 172
Query: 241 --RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
RL+E+G ++ I TI P NR AALK L R + + + E +
Sbjct: 173 ADRLKERGRIRLIQSRDTILPNALEFNRNAALKALERRGIWV-------------DLETN 219
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
V + I AD Y KG+ I ++V+WTVG++ V P +
Sbjct: 220 VSE--------ITADTIGLIY--------KGVTDTI-PVEIVMWTVGNQ-----VSPAID 257
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
R LP NA G+ ETL V +P IFALGD++A+ G +P AQVAFQQ+DF W
Sbjct: 258 RF-GLPANAEGKLTVTETLQVTENPDIFALGDAAAILAPHGVAIPTNAQVAFQQSDFVAW 316
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
N+W+++ +RPLLPF + NLGEM+ LG ++AA+S G+ LDGP+ + AR+L YL RLP
Sbjct: 317 NVWSSLTNRPLLPFHYTNLGEMLTLGDDNAALSSM---GIQLDGPLAYLARRLVYLYRLP 373
Query: 479 TDEHRLKVGVSWLTK 493
T EH+LKVG++WLT+
Sbjct: 374 TIEHQLKVGLNWLTQ 388
>gi|427740170|ref|YP_007059714.1| NADH dehydrogenase, FAD-containing subunit [Rivularia sp. PCC 7116]
gi|427375211|gb|AFY59167.1| NADH dehydrogenase, FAD-containing subunit [Rivularia sp. PCC 7116]
Length = 396
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 182/448 (40%), Positives = 261/448 (58%), Gaps = 78/448 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++K RICILGGGFGGLYTALRL L W++ +KP+++LVDQ++RF+F P+LYELL+GE+ +
Sbjct: 3 EQKSRICILGGGFGGLYTALRLVKLNWEESQKPEIVLVDQNDRFLFSPLLYELLTGEMQS 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP + +LL NTG++F++ V G++ T V L +G + YD LV
Sbjct: 63 WEIAPTYQELLQNTGIRFYQATVS--------GID-----TEEKRVELLNGPEIPYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------------------ 238
L++G E LD+VPGA +A F +L+DA ++ +L LE +
Sbjct: 110 LAMGGETPLDMVPGATSYAHAFRSLDDAYALEEQLRILEESDKDKIRIAIVGGGYSGVEL 169
Query: 239 ----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
+RL E+G + + + I NREAA K L R V + +
Sbjct: 170 ACKLSDRLGERGRFRLVEMADGILRNSPEFNREAAKKALDERGVWV-------------D 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
E V+ +IAAD S +Y KG+ I DLV+WTVG++ + P VE
Sbjct: 217 LETKVE--------SIAADSISLEY--------KGVVDTI-PVDLVIWTVGTR-VTPLVE 258
Query: 355 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
LP+ N +GQ T TL V +P IFALGD + D+ G+ +P TAQ AFQQ
Sbjct: 259 -------QLPIKHNKQGQVTTTSTLQVVDNPDIFALGDLAESFDAEGKQIPTTAQAAFQQ 311
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
AD+ GWN+WA++ +RPLLPFR+Q+LGE M LG ++A ++ G+ ++G G AR+LA
Sbjct: 312 ADYVGWNIWASLTNRPLLPFRYQHLGEFMSLGVDNATLTGL---GLKMEGTFGFVARRLA 368
Query: 473 YLIRLPTDEHRLKVGVSWLTKSAIDSVA 500
YL RLPT EH+LKVG +WLT+ I++++
Sbjct: 369 YLYRLPTLEHKLKVGFNWLTRPIIEALS 396
>gi|298492928|ref|YP_003723105.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase ['Nostoc
azollae' 0708]
gi|298234846|gb|ADI65982.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase ['Nostoc
azollae' 0708]
Length = 397
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 185/446 (41%), Positives = 247/446 (55%), Gaps = 82/446 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL L W+ KP+++LVDQS+RF+F P LYELL+GE+ AWEIA
Sbjct: 7 RICILGGGFGGLYTALRLSQLPWESTPKPEIILVDQSDRFLFSPFLYELLTGELQAWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + +LL TGV+F + V + T V L++GL + YD LVL+LG
Sbjct: 67 PPYQELLQGTGVRFHQAVVSEID-------------TDKQQVQLQNGLEIAYDRLVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-------------------- 240
E LD+VPGA +A F ++ + R++ L LE E
Sbjct: 114 GETPLDLVPGATTYAHHFRSITEVYRLEESLRVLEASETEKIRIAIVGAGYSGVELACKL 173
Query: 241 --RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
R+ EKG + I + I T NR+AA K L R G F+ + E
Sbjct: 174 ADRIGEKGRFRLIEISDQILRTSPEFNRQAAKKALETR------GVFI-------DLETK 220
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE--ADLVLWTVGSKPLLPHVEPP 356
V +I + S +Y ++Q+ E DLV+WTVG++ V P
Sbjct: 221 VV--------SIGENTISLEY-----------KTQVDEIPVDLVIWTVGTR-----VAP- 255
Query: 357 NNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
+ LPL N RGQ T L V HP IFALGD + D+ G+ +PATAQVAFQQAD
Sbjct: 256 --LVKTLPLKQNQRGQITTTSKLQVLEHPEIFALGDLADCLDTEGKQVPATAQVAFQQAD 313
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+ WN+WA++ +RPLLPFR+Q LGEMM LG ++A ++ G+ LDG + + AR+LAYL
Sbjct: 314 YTAWNIWASLTNRPLLPFRYQQLGEMMALGVDNATLTGL---GIKLDGSLAYIARRLAYL 370
Query: 475 IRLPTDEHRLKVGVSWLTKSAIDSVA 500
RLPT EH+LKVG SWL I +++
Sbjct: 371 YRLPTLEHQLKVGFSWLVSPIIKTLS 396
>gi|428306388|ref|YP_007143213.1| NADH dehydrogenase [Crinalium epipsammum PCC 9333]
gi|428247923|gb|AFZ13703.1| NADH dehydrogenase [Crinalium epipsammum PCC 9333]
Length = 397
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 180/435 (41%), Positives = 248/435 (57%), Gaps = 74/435 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL L W+ +KP+++LVD S+RF+F P LYELL+GE+ WEIA
Sbjct: 7 RICILGGGFGGLYTALRLSQLPWEKSQKPEIILVDHSDRFLFTPFLYELLTGELQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F+++LANTG++F C G++ V LE G + YD +VL+LG
Sbjct: 67 PPFSEILANTGIRF--------CQGVVAGID-----VEAKQVYLEDGNQLAYDRIVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER----------------------RN 238
+ L++V GA+E+A PF + DA R++ +L LE +
Sbjct: 114 GKTPLNMVSGASEYAIPFRAIPDAYRLEERLRYLEESEADKIRIAIVGAGYSGVELACKL 173
Query: 239 FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
ERL+ +G ++ I + I T NREAA K L R V + + E S
Sbjct: 174 AERLKTRGRLRLIELSDQILRTSPEFNREAARKALEERGVWI-------------DLETS 220
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
V+ +I D S +Y KG + D+VLWTVG++ V P N
Sbjct: 221 VE--------SIGKDYISLEY--------KG-QVDTIPVDVVLWTVGTE-----VTPVVN 258
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
L L N RGQ T TL +P IFALGD + RD+ G+ +PATAQ AFQQ+DFA W
Sbjct: 259 TL-PLKQNQRGQLVTTPTLQAVDYPDIFALGDLADCRDAEGQQVPATAQAAFQQSDFAAW 317
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
N+WA++ +RPLLPFR+QNLGEMM LG ++A +S G+ L+G + + AR+LAYL R+P
Sbjct: 318 NIWASLTNRPLLPFRYQNLGEMMTLGMDNATLSGL---GLKLEGNLAYIARRLAYLYRMP 374
Query: 479 TDEHRLKVGVSWLTK 493
+ H+LKVG +W+ +
Sbjct: 375 SLNHQLKVGFNWIAQ 389
>gi|119486499|ref|ZP_01620557.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Lyngbya sp. PCC 8106]
gi|119456401|gb|EAW37532.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Lyngbya sp. PCC 8106]
Length = 400
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 175/441 (39%), Positives = 245/441 (55%), Gaps = 78/441 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RICILGGGFGGLYTALRL L WQ ++P+++LVD +RF+F P+LYELL+GE+ +
Sbjct: 3 EQPTRICILGGGFGGLYTALRLNELPWQKSQQPEIILVDSRDRFLFSPLLYELLTGELQS 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F LL NT ++F + +L+ D V L G V YD+LV
Sbjct: 63 WEIAPPFEQLLQNTNIRFCQ---QLVTAID----------IEAQQVQLSEGEPVTYDYLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------------------ 238
L++G E LD+VPGAAE+A PF TLED R++ +L LE +
Sbjct: 110 LAMGGETPLDIVPGAAEYAIPFRTLEDTYRLEERLRVLEASDRDKIRIAIAGGGYSGVEL 169
Query: 239 ----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
+RL+E+G ++ I + I NREAA + L R++ + L V+ I
Sbjct: 170 ACKLADRLQERGRLRLIERDQEILRGSPSFNREAAQRALQQRRIWVDLETTVQSI----- 224
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
+D LE + I + D+VLWTVG+K + P V+
Sbjct: 225 --------------------EADSLALEYREQIDTI-----PVDVVLWTVGTK-ISPIVQ 258
Query: 355 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
LP+ N RGQ +L V HP IFALGD + +D G+ +P TAQ AFQQ
Sbjct: 259 -------SLPVKHNQRGQVSATTSLQVVDHPEIFALGDLADCKDVDGQTVPPTAQAAFQQ 311
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
AD+ WN+WA++ RPLLPFR+Q LGEMM LG +DA ++ G+ L+G + H AR+L
Sbjct: 312 ADYTAWNIWASLTGRPLLPFRYQGLGEMMTLGTDDATLTGL---GIKLEGQMAHLARRLI 368
Query: 473 YLIRLPTDEHRLKVGVSWLTK 493
YL RLPT +H+++V +W+T+
Sbjct: 369 YLYRLPTLDHQVRVAFNWMTR 389
>gi|428209968|ref|YP_007094321.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chroococcidiopsis thermalis PCC 7203]
gi|428011889|gb|AFY90452.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chroococcidiopsis thermalis PCC 7203]
Length = 397
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 176/439 (40%), Positives = 248/439 (56%), Gaps = 75/439 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RICILGGGFGGLYTALRL L W+ +K P+++L+D+S+RF+F P+LYELL+GE+
Sbjct: 3 QQPARICILGGGFGGLYTALRLSQLPWESEK-PEIVLIDRSDRFLFSPLLYELLTGELQT 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LLA+TG++F C + ++ + V L+ G+ + YD LV
Sbjct: 62 WEIAPPFVELLASTGIRF--------CQGEAAEID-----IYEQRVRLQDGIEIPYDRLV 108
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS----------------------EL 234
L+LG E LD+VPGA+ +AFPF TL DA R++ +L EL
Sbjct: 109 LALGGETPLDMVPGASSYAFPFRTLADAYRMEERLRLLEASTADKIRVAIVGGGYSGVEL 168
Query: 235 ERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
+ +RL E+G + + + I T NREAA K L R + L +
Sbjct: 169 ACKLADRLGERGRFRLVELSDQILRTSPEFNREAATKALEKRGIWL-------------D 215
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
E V+ E AI LE + + I D+V+WT+G++
Sbjct: 216 LETKVESIEPNAIA------------LEYKNQVD-----IIPVDIVVWTIGTRV------ 252
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
P R L N RGQ TL V P IFALGD + RD++ + +P TAQ A QQAD
Sbjct: 253 APIVRSLPLKQNQRGQLTATSTLQVIDRPEIFALGDLAECRDAAEQQVPGTAQAAVQQAD 312
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+A WN+WA++ RPLLPFR+QNLGEMM LG + A ++ G+ L+GP+ AR+LAYL
Sbjct: 313 YAAWNIWASLTHRPLLPFRYQNLGEMMTLGIDSATLTGL---GIKLEGPLAAIARRLAYL 369
Query: 475 IRLPTDEHRLKVGVSWLTK 493
RLPT +H++KVG++W+T+
Sbjct: 370 YRLPTLDHQIKVGINWITR 388
>gi|414076947|ref|YP_006996265.1| NADH dehydrogenase [Anabaena sp. 90]
gi|413970363|gb|AFW94452.1| NADH dehydrogenase [Anabaena sp. 90]
Length = 397
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 183/442 (41%), Positives = 243/442 (54%), Gaps = 74/442 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ICILGGGFGGLYTALRL L W+ KP+++LVDQS+RFVF P+LYELL+ E+ WEIA
Sbjct: 7 KICILGGGFGGLYTALRLSQLPWESTPKPEIILVDQSDRFVFSPLLYELLTRELQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P +++LL TG+QF + V + ++ TV L + YD LVL+LG
Sbjct: 67 PPYSELLQGTGIQFHQAAVSAIDINEQ-------------TVQLADKSELNYDRLVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-------------------- 240
E LD+VPGA A+PF T+ DA +++ +L LE N E
Sbjct: 114 GETPLDLVPGAVTHAYPFRTITDAYKLEERLRILEAANPEKIRVAIVGAGYSGVELACKL 173
Query: 241 --RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
R+ EKG + I + I T NREAA K L ++ G F+ +V
Sbjct: 174 ADRIGEKGRFRLIELSDQILRTSPEFNREAAKKALDSK------GVFIDLETKVA----- 222
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
A D+NS LE + + + D+V+WTVG+K V P
Sbjct: 223 ------------AIDQNSIS--LEYKNQVDTI-----PVDVVIWTVGTK-----VSPVVT 258
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
L L N RGQ T L HP IFALGD + D+ G+ +PATAQVAFQQAD+ W
Sbjct: 259 AL-PLKQNQRGQITTTAQLQAIEHPEIFALGDLADCLDADGKQVPATAQVAFQQADYTAW 317
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
N+WA I +RPLLPFR+Q LGEMM LG ++A ++ GV LDG + AR+LAYL RLP
Sbjct: 318 NIWATITNRPLLPFRYQPLGEMMALGIDNATLTGL---GVQLDGSFAYLARRLAYLYRLP 374
Query: 479 TDEHRLKVGVSWLTKSAIDSVA 500
T H+LKVG +WL I++++
Sbjct: 375 TLNHQLKVGFNWLVSPIIEAIS 396
>gi|411117162|ref|ZP_11389649.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410713265|gb|EKQ70766.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 399
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 178/437 (40%), Positives = 247/437 (56%), Gaps = 78/437 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL L W + +KP++ LVD+ +RFVF P+LYEL++GE+ WE+A
Sbjct: 7 RICILGGGFGGLYTALRLSELPWANGEKPEIALVDRRDRFVFAPLLYELMTGELQDWEVA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF DLLA TGV ++ V + +D + L G Y LVL++G
Sbjct: 67 PRFQDLLAGTGVTVYQSTVAGIDLADK-------------RIQLHDGTEFPYTKLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER----------------------RN 238
E +++ VPGAAEFA PF T+ DA R++ +L LE +
Sbjct: 114 GETRMNKVPGAAEFALPFRTITDAYRLEARLQSLEVSERDRIRVAIVGGGYSGVELACKL 173
Query: 239 FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
+RL E+G ++ I + I T T NR+AA K L R + L + + S
Sbjct: 174 ADRLRERGRIRIIELTDQILRTSTEFNRQAADKALKDRDIWL-------------DLDTS 220
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
V+ + AD S Y KG I DLVLWTVG++ +
Sbjct: 221 VEA--------LTADTISLNY--------KGTVDMI-PVDLVLWTVGTQ--------IAD 255
Query: 359 RLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ LPL N RGQ TL V HP +FALGD + +D++G+ + TAQVA QQAD+
Sbjct: 256 AIAALPLKKNQRGQITVTPTLQVVEHPDVFALGDLADCKDANGQQVATTAQVAIQQADYV 315
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
GWNLWA++ +RPLLPFR+Q+LGEMM LG N+A ++ G+TL+G AR+LAYL R
Sbjct: 316 GWNLWASLTNRPLLPFRYQHLGEMMTLGINNATLTGL---GITLEGIPAVLARRLAYLYR 372
Query: 477 LPTDEHRLKVGVSWLTK 493
+PT +H+++VG++W+T+
Sbjct: 373 MPTLDHQIRVGLNWITQ 389
>gi|428317320|ref|YP_007115202.1| NADH dehydrogenase [Oscillatoria nigro-viridis PCC 7112]
gi|428241000|gb|AFZ06786.1| NADH dehydrogenase [Oscillatoria nigro-viridis PCC 7112]
Length = 397
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 178/441 (40%), Positives = 246/441 (55%), Gaps = 78/441 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+++PRICILGGGFGGLYTALRL L + +KP+++LVD+ +RF+F P+LYELL+GE+
Sbjct: 3 QQQPRICILGGGFGGLYTALRLSQLPFSTTEKPEIVLVDRRDRFLFVPLLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP FA+LL NTGV+F C G++ VLL G + D LV
Sbjct: 63 WEIAPPFAELLQNTGVRF--------CQGTVSGID-----VEEKRVLLHDGPEIPCDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------------------ 238
L+LG E LD+V GA E+A+ F TL+DA R++ +L LE N
Sbjct: 110 LALGGETPLDMVKGAVEYAYSFRTLDDAYRLEERLRFLEASNNDKIRVAIVGAGYSGVEL 169
Query: 239 ----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
+RL +KG V+ + I T NREAA K L R+V + L
Sbjct: 170 ACKLADRLGDKGRVRLVEQTDMILRTSPEFNREAATKALEKRQVWIDL------------ 217
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
A+ I +D S Y KG + + D+VLWTVG++
Sbjct: 218 ---------ETAVEAIGSDTISLLY--------KG-QVDVLPVDIVLWTVGTQV------ 253
Query: 355 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
+ + LPL N RGQ + + + HP IFALGD + D++ + +P TAQ AFQQ
Sbjct: 254 --SQAVRSLPLKQNRRGQLIVNSQMQIIDHPDIFALGDLAECHDATNQKVPGTAQTAFQQ 311
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
AD+ WN+WA++ RPLLPFR+Q LGEMM LG ++A ++ G+ LDG + H AR+LA
Sbjct: 312 ADYTAWNIWASLTGRPLLPFRYQPLGEMMTLGNDNATLAGL---GIKLDGQLAHIARRLA 368
Query: 473 YLIRLPTDEHRLKVGVSWLTK 493
YL R+PT +H+LKVG +W++K
Sbjct: 369 YLYRMPTFDHQLKVGFNWISK 389
>gi|428225030|ref|YP_007109127.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geitlerinema sp. PCC 7407]
gi|427984931|gb|AFY66075.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geitlerinema sp. PCC 7407]
Length = 397
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 180/437 (41%), Positives = 244/437 (55%), Gaps = 78/437 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ICILGGGFGGLYTALRL L W++ KP+++L+DQ +RF+F P+LYEL++GE++ WEIA
Sbjct: 7 KICILGGGFGGLYTALRLSQLPWENQPKPEIVLMDQHDRFLFLPLLYELVTGEMETWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P +A+LLA+TG++F + V ++ VN T L +YD+LVL+LG
Sbjct: 67 PPYAELLASTGIRFQQGCVA------NIDVNAKRVTLQDETAL-------DYDYLVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-------------------- 240
E LD VPG AE A PF + DA R+ +L LE E
Sbjct: 114 GETPLDGVPGVAEHAIPFRAIADAYRLQEQLRLLEASAAEKIRVAIAGAGYSGVELACKL 173
Query: 241 --RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
RL ++G ++ + + I T NR AA K L R V + L
Sbjct: 174 ADRLGDRGRIRLVELSDQILRTSPDFNRTAAQKALEERGVWIDL---------------- 217
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
I ++ D S Y KG ++ D+VLWTVGSKP P V
Sbjct: 218 -----ETKIESVGPDSLSLLY--------KG-QTDTIPVDIVLWTVGSKP--PSV----- 256
Query: 359 RLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ LP N RGQ T TL V HP IFALGD + RD+ G+ + TAQ AFQ AD+
Sbjct: 257 -VASLPFARNPRGQITTLSTLQVVDHPHIFALGDLADTRDAEGQQIAPTAQAAFQAADYV 315
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
GWNLWAAI RPLLPFR+Q+ GEM+ LG ++A ++ G+TLDG + H AR+LAYL R
Sbjct: 316 GWNLWAAITGRPLLPFRYQHFGEMLSLGIDNATLTGL---GITLDGSLAHIARRLAYLYR 372
Query: 477 LPTDEHRLKVGVSWLTK 493
+PT +H++KVG++W+T+
Sbjct: 373 MPTIDHQIKVGLNWMTQ 389
>gi|254411184|ref|ZP_05024961.1| Pyridine nucleotide-disulphide oxidoreductase, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196181685|gb|EDX76672.1| Pyridine nucleotide-disulphide oxidoreductase, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 400
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 179/444 (40%), Positives = 249/444 (56%), Gaps = 78/444 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ R+CILGGGFGGLYTALRL L W+ ++P+++LVDQS+RFVF P+LYELL+GE+ W
Sbjct: 4 QTTRLCILGGGFGGLYTALRLSQLPWEKSQQPEIILVDQSDRFVFMPLLYELLTGELQTW 63
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
EIAP F +LLANTGV+F + V +G++ + V L+ G+ YD LVL
Sbjct: 64 EIAPPFEELLANTGVRFTQATV--------MGID-----SEQQRVQLQDGVEFAYDRLVL 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------------------- 238
SLG ++ VPG AE A PF + DA R++ +L LE +
Sbjct: 111 SLGGVTPMESVPGVAEHAIPFRAIADAYRLEERLRILEESDAEKIRVAVVGGGYSGVELA 170
Query: 239 ---FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 295
ERL E+G ++ I I T NR+A+ L+ RKV + L
Sbjct: 171 CKLAERLGERGRIRLIEQGEMILKTSPEFNRKASQNALNERKVWIDL------------- 217
Query: 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
++ I+AD S Y KG + D+VLWTVG+ V P
Sbjct: 218 --------DTSVDAISADTISLLY--------KG-QVDTIPVDIVLWTVGTT-----VAP 255
Query: 356 PNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
+ LP N RGQ TL V HP ++ALGD + RD++G+ +P TAQ AFQQA
Sbjct: 256 V---VRSLPFKQNHRGQLMITPTLQVVDHPELYALGDLADCRDATGQQVPNTAQSAFQQA 312
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
D+A WN+WA++ RPLLPFR+Q+LGEMM LG ++A ++ G+ LDG H AR+LAY
Sbjct: 313 DYAAWNIWASLTGRPLLPFRYQHLGEMMTLGTDNATLTGL---GLKLDGVFAHLARRLAY 369
Query: 474 LIRLPTDEHRLKVGVSWLTKSAID 497
L R+PT +H+LKVG++W+ + ++
Sbjct: 370 LYRMPTLDHQLKVGLNWMAQPLLN 393
>gi|220906867|ref|YP_002482178.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7425]
gi|219863478|gb|ACL43817.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 7425]
Length = 414
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 178/457 (38%), Positives = 250/457 (54%), Gaps = 82/457 (17%)
Query: 72 YTWPDK----KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY 127
YT P++ ++ +ICILGGGF GLYTALRL W + KP + LVDQS+RF+F P LY
Sbjct: 12 YTSPEQSAQPQRQQICILGGGFAGLYTALRLSQFPWNESSKPNITLVDQSDRFLFVPFLY 71
Query: 128 ELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG 187
EL++GE+ WEIAP F ++L NTGV+F + V+ + V L +G
Sbjct: 72 ELVTGELQTWEIAPPFEEILVNTGVRFIQSSVEDIRIDQR-------------QVQLGNG 118
Query: 188 LIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER----------- 236
+ YD LVL+LG E LD+VPGA + A PF T+ DA R++ +L LE
Sbjct: 119 QTLTYDRLVLALGGETPLDMVPGAKDHAIPFRTIADAYRLEERLRALEESPQDRIRVAIV 178
Query: 237 -----------RNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 285
+ +RL +G ++ I+ I P + ALK L R V + L
Sbjct: 179 GAGPSGVELACKLSDRLSPRGRLRLIDRNDQILKFSAPFTQSTALKALEQRDVWIDLETT 238
Query: 286 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 345
++ +D+ +E KG +I DLVLWTVG
Sbjct: 239 PTAVQ-------------------------ADRLFVE----YKGQVDEI-PVDLVLWTVG 268
Query: 346 SKPLLPHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 403
+K + LPL N RGQ T TL V HP IFALGD + RD+ G+ +P
Sbjct: 269 TKV--------AESIRRLPLKHNERGQLFTTPTLQVMDHPEIFALGDLAECRDAEGKQVP 320
Query: 404 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 463
+TAQ AFQQAD+AGWN+WA++ DRPLLPFR+ +LGEM+ LG + AA++ G+ L+GP
Sbjct: 321 STAQAAFQQADYAGWNIWASLRDRPLLPFRYSHLGEMLTLGIDSAALAGL---GLKLEGP 377
Query: 464 IGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 500
+ + R+LAYL R+PT EH+LKVG++W+ + +++ A
Sbjct: 378 LAYLIRRLAYLYRMPTLEHQLKVGLNWILRPLLETSA 414
>gi|254424055|ref|ZP_05037773.1| Pyridine nucleotide-disulphide oxidoreductase, putative
[Synechococcus sp. PCC 7335]
gi|196191544|gb|EDX86508.1| Pyridine nucleotide-disulphide oxidoreductase, putative
[Synechococcus sp. PCC 7335]
Length = 396
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 170/434 (39%), Positives = 244/434 (56%), Gaps = 75/434 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
ICILGGGFGGLYTAL L L W++ +++L+DQ +RFVF P+LYEL++GE+ WEIAP
Sbjct: 5 ICILGGGFGGLYTALALSKLDWEETPH-EIVLIDQRDRFVFAPLLYELVTGELQTWEIAP 63
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ +L+ANTG++F + + D++ +N TV L G + YD +VL+LG
Sbjct: 64 PYEELVANTGIRFHQSGI------DNIDINAQ-------TVELTDGESLRYDRIVLALGG 110
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE--------------------- 240
E +D+ PG AE A PF +LEDA R+ KL +LE N E
Sbjct: 111 ETPMDMAPGVAEHAIPFRSLEDAYRLKDKLRQLENDNLEKIRVAIVGGGYSGVEIACKIA 170
Query: 241 -RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
RL +KG V+ + I + NR+AAL L+ + V + ++E +V
Sbjct: 171 ERLGDKGRVRIVERANQILQSSPEFNRKAALDALNEKNVWI-------------DYETTV 217
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
+ + + DK D+VLWTVGSK V P +
Sbjct: 218 TEVTANSFSMSYKDK-----------------VDTLPVDIVLWTVGSK-----VSPALDA 255
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
L DLP N RGQ TL V +P +FALGD + D+ G+ +P TAQ A QQAD+A WN
Sbjct: 256 L-DLPRNERGQFTIAPTLQVIDYPHVFALGDLADGPDADGKSVPPTAQSALQQADYAAWN 314
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+WA+++DRPLLPFR+Q+LGEMM LG ++A ++ G+ L+G + H R+L YL R+PT
Sbjct: 315 IWASLSDRPLLPFRYQHLGEMMTLGTDNATLTGL---GIKLEGNLAHVVRRLTYLYRMPT 371
Query: 480 DEHRLKVGVSWLTK 493
+H+++VG++WLT+
Sbjct: 372 LDHQIRVGINWLTQ 385
>gi|282900233|ref|ZP_06308186.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cylindrospermopsis raciborskii CS-505]
gi|281194875|gb|EFA69819.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cylindrospermopsis raciborskii CS-505]
Length = 413
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 179/445 (40%), Positives = 246/445 (55%), Gaps = 82/445 (18%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
ICILGGGFGGLYTALRL L W + +KP+++L+DQ +RF+F P+LYELL+ E+ WEIAP
Sbjct: 20 ICILGGGFGGLYTALRLSQLDWGNTEKPEIVLIDQGDRFIFSPLLYELLTNELQTWEIAP 79
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ ++L NTGV F + +V + T V L G I Y LVL+LG+
Sbjct: 80 SYQEILENTGVHFHQAKVSEID-------------TDNQQVKLCDGKIFPYHRLVLALGS 126
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLS----------------------ELERRNF 239
E LD+VPGA + A+PF T+ D R++ +L EL +
Sbjct: 127 ETNLDLVPGAVKHAYPFRTIYDVHRLEERLRILTATDPEKIRVAIVGAGYSGVELACKLA 186
Query: 240 ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
+RL EKG ++ I I T + NR+ A K L + V F+ + E V
Sbjct: 187 DRLGEKGRLRLIETGDQILRTSSEFNRQQAKKALEQKSV------FI-------DLETKV 233
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE--ADLVLWTVGSKPLLPHVEPPN 357
+I + S +Y ++QI E DLV+WTVG++ +
Sbjct: 234 --------VSIGENTISLEY-----------KNQIDEIPVDLVIWTVGTRI--------S 266
Query: 358 NRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ +LPL N RGQ TL V HP IFALGD + +D + LP TAQVAFQQAD+
Sbjct: 267 SLAQNLPLAHNQRGQITCTPTLQVIEHPEIFALGDLADCKDIEEQQLPGTAQVAFQQADY 326
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
A WN+WA++ DRPLLPFR+Q LGE+M LG ++A ++ G+TLDG +G+ R+L YL
Sbjct: 327 AAWNIWASLTDRPLLPFRYQALGEVMALGVDNATLTAL---GITLDGYLGYLVRRLVYLY 383
Query: 476 RLPTDEHRLKVGVSWLTKSAIDSVA 500
RLPT EH+LKVG SWL I +++
Sbjct: 384 RLPTLEHQLKVGFSWLLTPIIKTLS 408
>gi|428311718|ref|YP_007122695.1| NADH dehydrogenase, FAD-containing subunit [Microcoleus sp. PCC
7113]
gi|428253330|gb|AFZ19289.1| NADH dehydrogenase, FAD-containing subunit [Microcoleus sp. PCC
7113]
Length = 399
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 175/446 (39%), Positives = 246/446 (55%), Gaps = 74/446 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RICILGGGFGGLYTALRL L W+ ++P+++LVDQ++RF+F P+LYELL+GE+
Sbjct: 3 EQPTRICILGGGFGGLYTALRLSQLPWEKPQRPEIILVDQNDRFLFTPLLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP + +LLANTGV+F + V G+N V L+ G YD LV
Sbjct: 63 WEIAPPYEELLANTGVRFTQAAVA--------GIN-----VEERQVQLQDGPDFTYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------------------ 238
L++G E LD+ PG E+ F T+ DA R++ +L LE +
Sbjct: 110 LAMGGETPLDMAPGVMEYGIGFRTIADAYRLEERLRILEESDKEKIRVAIVGGGYSGVEL 169
Query: 239 ----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
ERL ++G ++ I + I T T NR+AA K L+ R V + +
Sbjct: 170 ACKLAERLGDRGRLRLIELSDMILRTSTDFNRDAAHKALNDRSVWI-------------D 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
E SV +I D S Y KG + DLVLWTVG++
Sbjct: 217 LETSVA--------SIEPDTISLLY--------KG-QLDTIPVDLVLWTVGTRV------ 253
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
P R L + RGQ TL HP IFALGD + D+ G+ +P TAQ AFQQAD
Sbjct: 254 APVVRALSLKQSQRGQLTVTPTLQAIDHPEIFALGDLADCHDAEGQQVPNTAQAAFQQAD 313
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+ WN+WA++ RPLLPFR+Q+LGEMM LG ++A + G+ LDGP+ + R+LAYL
Sbjct: 314 YTAWNIWASLTGRPLLPFRYQHLGEMMTLGIDNATFTGL---GIKLDGPLAYLTRRLAYL 370
Query: 475 IRLPTDEHRLKVGVSWLTKSAIDSVA 500
R+PT +H+LKVG++W+ + ++ ++
Sbjct: 371 YRMPTLDHKLKVGLNWIAQPFVEMLS 396
>gi|443318950|ref|ZP_21048191.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
6406]
gi|442781484|gb|ELR91583.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
6406]
Length = 397
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 176/441 (39%), Positives = 239/441 (54%), Gaps = 78/441 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL +L W + +V+LVDQ +RFVF P+LYEL++GE+ WE+A
Sbjct: 7 RICILGGGFGGLYTALRLSTLPWSQQEPVEVVLVDQRDRFVFAPLLYELVTGELQTWEVA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P +A+LLANT V+F ++ V + D V L + YD LVL++G
Sbjct: 67 PPYAELLANTPVRFIQNEVSGISLGDR-------------QVFLPDQEPLTYDRLVLAVG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-------------------- 240
E LD VPG A+ A PF T+EDA R+ +L LE E
Sbjct: 114 GETPLDGVPGVADHAIPFRTVEDAQRLQERLRHLEASTAEVLRVAVVGGGYSGVELACKL 173
Query: 241 --RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
RL E+G ++ + I T T NR+AA + LS R V + L V +
Sbjct: 174 ADRLGERGRIRLVERADDILLTSTEFNRKAAQQALSERGVWIDLDTTVGSV--------- 224
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK--PLLPHVEPP 356
+D+ L + + + D+VLWTVG++ PLL +
Sbjct: 225 ----------------GTDRLTLNYREQVDEI-----PVDIVLWTVGTRVSPLLAGL--- 260
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
DLP N R Q TL V HP IFALGD + +D+ G+ +P TAQ A QQAD+A
Sbjct: 261 -----DLPKNNRQQLLVQSTLQVVDHPHIFALGDLADCKDADGQQVPTTAQSALQQADYA 315
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
GWNLWA++ RPLLPF +Q+LGEMM LG ++A ++ GV LDG + H AR+L YL R
Sbjct: 316 GWNLWASLTHRPLLPFHYQHLGEMMALGVDNATLTGL---GVQLDGVLAHVARRLTYLYR 372
Query: 477 LPTDEHRLKVGVSWLTKSAID 497
+PT H+++VG++W+ K D
Sbjct: 373 MPTLSHQIRVGLNWIEKPLRD 393
>gi|113477135|ref|YP_723196.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Trichodesmium erythraeum IMS101]
gi|110168183|gb|ABG52723.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Trichodesmium erythraeum IMS101]
Length = 398
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 176/447 (39%), Positives = 246/447 (55%), Gaps = 82/447 (18%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K RICILGGGFGGLYTALRL W+ KKP+++L+D+ +RF+F P+LYEL++GE+
Sbjct: 3 EKTQRICILGGGFGGLYTALRLIQFPWESSKKPEIILIDKRDRFLFAPLLYELVTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LLANT + F C G++ + V LE+G Y LV
Sbjct: 63 WEIAPPFEELLANTDIHF--------CQGVVSGID-----LNQQQVELENGQAFSYHRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE---------------- 240
L++G E +++VPGAAE+A PF T+ DA R+ KL LE E
Sbjct: 110 LAMGGETPIEMVPGAAEYAIPFRTVNDAYRLQEKLRVLEASEREKIRIAVIGGGYSGVEL 169
Query: 241 ------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
RL+EKG ++ + I T NRE+A K LS + + + +
Sbjct: 170 ACKLADRLQEKGRIRLVERNNMILGTSPDFNRESATKALSEKNIWI-------------D 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPLLPH 352
E V+ +I A + S KY + Q+ D+VLWTVG+K + P
Sbjct: 217 LETEVE--------SIEATQISLKY-----------QEQVDTIPVDIVLWTVGTK-VAPV 256
Query: 353 VEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
VE LPL N R Q T TL V+ + +IFA+GD + +D+ G+ +P TAQVA
Sbjct: 257 VE-------SLPLTKNERQQIITSATLQVQDNQKIFAIGDLADCQDADGQKVPTTAQVAI 309
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
QQ+D+ WN+WA++ RPLLPFR+Q LGEMM LG ++A ++ G+ LDG I + AR+
Sbjct: 310 QQSDYVAWNIWASLTGRPLLPFRYQALGEMMALGLDNATLTSL---GIKLDGQIAYMARR 366
Query: 471 LAYLIRLPTDEHRLKVGVSWLTKSAID 497
L YL RLPT EH++KV +W+ D
Sbjct: 367 LVYLYRLPTLEHQIKVAFNWMINPIQD 393
>gi|428776793|ref|YP_007168580.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Halothece sp. PCC 7418]
gi|428691072|gb|AFZ44366.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Halothece sp. PCC 7418]
Length = 398
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 173/439 (39%), Positives = 247/439 (56%), Gaps = 74/439 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ K RICILGGGFGGLYTALRL L W P++ LVDQ +RF+F P+LYELL+ E+
Sbjct: 3 ESKHRICILGGGFGGLYTALRLSQLPWDHHGVPEITLVDQRDRFLFTPLLYELLTDELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F+++LA+T ++F + V L V + + YD LV
Sbjct: 63 WEIAPPFSEILADTSIEFVQGTVTDLNVKRQ-------------QVQIADQPSLNYDSLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE---------------- 240
L++G + +++VPGA EFAFPF +L+DA +++ KL LE + E
Sbjct: 110 LAMGGKTPMEMVPGAQEFAFPFHSLKDAYQLEEKLRSLENSDREKIRIAIVGGGYSGVEL 169
Query: 241 ------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
R+ ++G ++ I I T NRE A K L R V + +
Sbjct: 170 ACKLRDRVGDRGRIRIIERGELILKTSPDFNRETARKALVDRDVWM-------------D 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
E SV++ I AD+ + Y KG +S D+V WTVG+
Sbjct: 217 TETSVER--------ITADEITLLY--------KG-QSDTIPVDIVAWTVGT------TV 253
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
P + DLP + G+ + + TL V+GHP IFALGD + +D SG+ +PATAQVAFQQ+D
Sbjct: 254 PELVKNLDLPHHETGKIKVEPTLQVEGHPAIFALGDLAFCQDGSGKVVPATAQVAFQQSD 313
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+ WNLWA + RPLLPF++ NLGEM++LG ++A+++ +GV LDG + + AR+LAYL
Sbjct: 314 YCAWNLWATLTGRPLLPFKYYNLGEMLVLGTDNASLTS---QGVKLDGIVAYLARRLAYL 370
Query: 475 IRLPTDEHRLKVGVSWLTK 493
R+PT EH+L VG +W+T+
Sbjct: 371 SRMPTPEHQLTVGSNWITQ 389
>gi|186682054|ref|YP_001865250.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Nostoc
punctiforme PCC 73102]
gi|186464506|gb|ACC80307.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Nostoc
punctiforme PCC 73102]
Length = 397
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 184/448 (41%), Positives = 253/448 (56%), Gaps = 78/448 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RICILGGGFGGLYTALRL L W+ +KP+++LVDQS+RF+F P+LYELL+GE+
Sbjct: 3 QQNSRICILGGGFGGLYTALRLSQLPWESTQKPEIVLVDQSDRFLFSPLLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LL TGV+F++ V G++ V + G + YD LV
Sbjct: 63 WEIAPPFEELLQGTGVRFYQGVVS--------GID-----IEQQRVDIHEGPEIPYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE---------------- 240
L+LG E LD+VPGAA + +PF T+ DA R++ +L LE + +
Sbjct: 110 LALGGETPLDLVPGAAAYGYPFRTISDAYRLEERLRFLEESDADKIRVAIIGAGYSGVEL 169
Query: 241 ------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
RL E+G + + + I T NREAA K L AR V L +
Sbjct: 170 ACKLADRLGERGRFRIVEIADQILRTSPEFNREAAKKALDARGVFL-------------D 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
E V+ E +I LE + + + DLV+WTVG+K + P V+
Sbjct: 217 LETKVELIEQNSI------------TLEYKNQLDTIP-----VDLVIWTVGNK-VAPVVK 258
Query: 355 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
LPL N RGQ T L V HP IFALGD + D G+ +PATAQ AFQQ
Sbjct: 259 -------SLPLKQNQRGQINTTSNLQVIDHPEIFALGDLADCHDVEGQQVPATAQAAFQQ 311
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
AD+ WN+WA++ +RPLLPF +Q LGEMM LG+N+A ++ G+ LDGP+ AR++A
Sbjct: 312 ADYTAWNIWASLTNRPLLPFHYQQLGEMMTLGKNNATLTGL---GIKLDGPLASVARRIA 368
Query: 473 YLIRLPTDEHRLKVGVSWLTKSAIDSVA 500
YL RLPT +H+LKVG +WL + I++++
Sbjct: 369 YLYRLPTLDHQLKVGFNWLVRPIIETLS 396
>gi|427715899|ref|YP_007063893.1| NADH dehydrogenase [Calothrix sp. PCC 7507]
gi|427348335|gb|AFY31059.1| NADH dehydrogenase [Calothrix sp. PCC 7507]
Length = 397
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 182/450 (40%), Positives = 257/450 (57%), Gaps = 82/450 (18%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RI ILGGGFGGLYTALRL L W+ +KP+++LVDQS+RF+F P+LYELL+GE+
Sbjct: 3 QQTSRIVILGGGFGGLYTALRLSQLHWESTQKPEIVLVDQSDRFLFSPLLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LLANTGV+F++ V + + L V L+ G + YD LV
Sbjct: 63 WEIAPPFTELLANTGVRFYQAVVAGIDTTQQL-------------VQLQDGPELAYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE---------------- 240
L+LG E LD+V GA +A+PF T+ DA R++ +L LE + +
Sbjct: 110 LALGGETPLDLVAGATSYAYPFRTITDAYRLEERLRVLEASDADKIRVAIAGAGYSGVEL 169
Query: 241 ------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
RL+++G + I++ I T NREAA K L AR V + L
Sbjct: 170 ACKLADRLKDRGRFRLIDIADQILRTSPDFNREAAKKALDARNVFIDL------------ 217
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPLLPH 352
I +I D S +Y ++Q+ DLV+WTVG++
Sbjct: 218 ---------DTKIESIGPDTISLEY-----------KNQVDTIPVDLVIWTVGTRV---- 253
Query: 353 VEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
++ + LPL N RGQ T TL V HP IFALGD + D+ G+ +PATAQ AF
Sbjct: 254 ----SSVVKSLPLKQNQRGQISTTPTLQVFDHPEIFALGDLADTLDAEGQQVPATAQAAF 309
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
QQAD+ WN+WA++ +RPLLPFR+Q LGEM+ LG ++A ++ G+ LDGP+ + R+
Sbjct: 310 QQADYTAWNIWASLTNRPLLPFRYQKLGEMLALGIDNATLTGL---GIKLDGPLAYVGRR 366
Query: 471 LAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 500
LAYL RLPT +H+LKVG +WL + I++++
Sbjct: 367 LAYLYRLPTLDHQLKVGFNWLVRPIIETLS 396
>gi|334117495|ref|ZP_08491586.1| NADH dehydrogenase [Microcoleus vaginatus FGP-2]
gi|333460604|gb|EGK89212.1| NADH dehydrogenase [Microcoleus vaginatus FGP-2]
Length = 397
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 176/445 (39%), Positives = 245/445 (55%), Gaps = 78/445 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+++PRICILGGGFGGLYTALRL L + +KP+++LVD+ +RF+F P+LYELL+ E+
Sbjct: 3 QQQPRICILGGGFGGLYTALRLSQLPFSKTEKPEIVLVDRRDRFLFVPLLYELLTDELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP FA+LL TGV+F C G++ V L G + D LV
Sbjct: 63 WEIAPPFAELLQKTGVRF--------CQGTVSGID-----VEEKRVQLHDGPEIPCDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------------------ 238
L+LG E LD+V GA E+A+ F TL+DA R++ +L LE N
Sbjct: 110 LALGGETPLDMVKGAVEYAYSFRTLDDAYRLEERLRFLEASNNDKIRVAIVGAGYSGVEL 169
Query: 239 ----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
+RL EKG V+ + I T NREAA + L RKV + +
Sbjct: 170 ACKLADRLGEKGRVRLVEQGDMILRTSPEFNREAASQALEKRKVWI-------------D 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
E V+ E+ I + KG + + D+VLWTVG++
Sbjct: 217 LETEVEAIEAETISLL----------------YKG-QLDVLPVDIVLWTVGTQ------- 252
Query: 355 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
+ + LPL N RGQ + + + HP IFALGD + D++G+ +P TAQ AFQQ
Sbjct: 253 -VSQAVRSLPLKQNRRGQLIVNSQMQIIDHPDIFALGDLAECHDATGQKVPGTAQTAFQQ 311
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
AD+ WN+WA++ RPLLPFR+Q LGEMM LG ++A ++ G+ LDG + H AR+LA
Sbjct: 312 ADYTAWNIWASLTGRPLLPFRYQPLGEMMTLGIDNATLAGL---GIKLDGQLAHIARRLA 368
Query: 473 YLIRLPTDEHRLKVGVSWLTKSAID 497
YL R+PT +H+LKVG +W++K D
Sbjct: 369 YLYRMPTFDHQLKVGFNWISKPIQD 393
>gi|282896665|ref|ZP_06304673.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Raphidiopsis brookii D9]
gi|281198383|gb|EFA73271.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Raphidiopsis brookii D9]
Length = 404
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 176/445 (39%), Positives = 247/445 (55%), Gaps = 82/445 (18%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
ICILGGGFGGLYTALRL L W + +KP+++LVDQ +RF+F P+LYEL++ E+ WEIAP
Sbjct: 16 ICILGGGFGGLYTALRLSQLDWGNTEKPEIVLVDQGDRFIFSPLLYELMTNELQTWEIAP 75
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ ++L NTGV F + +V + T V L G I Y LVL+LG+
Sbjct: 76 LYQEILENTGVHFHQAKVSEID-------------TDNQQVKLCDGKIFPYHRLVLALGS 122
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE--------------------- 240
E LD+VPGA + A+PF ++ D +++ +L L R+ E
Sbjct: 123 ETNLDLVPGAVKHAYPFRSICDVQQLEERLRILTARDLEKIRVAIVGAGYSGVELACKLA 182
Query: 241 -RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
RL EKG ++ I + I T + NR+ A K L + G F+ + E V
Sbjct: 183 DRLGEKGRLRLIEIGDQILRTSSDFNRQQAKKALEQK------GVFI-------DLETKV 229
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE--ADLVLWTVGSKPLLPHVEPPN 357
+I + S +Y ++QI E DLV+WT+G++ +
Sbjct: 230 --------ASIGENTISLEY-----------KNQIDEIPVDLVIWTIGTRI--------S 262
Query: 358 NRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ + +L L N RGQ TL V HP IFALGD + +D + LP TAQVAFQQAD+
Sbjct: 263 SLVQNLTLAHNQRGQITCTPTLQVVEHPEIFALGDLADCKDIEEKQLPGTAQVAFQQADY 322
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
A WN+WA++ DRPLLPFR+Q LGE+M LG ++A ++ G+TLDG +G+ R+L YL
Sbjct: 323 AAWNIWASLTDRPLLPFRYQPLGEVMALGVDNATLTAL---GITLDGYLGYLVRRLVYLY 379
Query: 476 RLPTDEHRLKVGVSWLTKSAIDSVA 500
RLPT EH+LKVG SWL I +++
Sbjct: 380 RLPTLEHQLKVGFSWLLTPIIKTLS 404
>gi|428214301|ref|YP_007087445.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoria acuminata
PCC 6304]
gi|428002682|gb|AFY83525.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoria acuminata
PCC 6304]
Length = 401
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 171/440 (38%), Positives = 249/440 (56%), Gaps = 78/440 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K RICILGGGFGGLY ALRL L W P+++L+D ++RF+F P+LYELL+GE+ +W
Sbjct: 3 EKARICILGGGFGGLYAALRLSELPWNPSATPEIVLIDNNDRFLFSPLLYELLTGELQSW 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
EIAP F++LLANT V+F + V + + V LE G+ YD ++
Sbjct: 63 EIAPPFSELLANTRVRFHQGTVSEINLENR-------------QVHLEDGVEFSYDRAIV 109
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS----------------------ELE 235
+LG E LD+VPG+A++AFPF T+ DA R++ +L EL
Sbjct: 110 ALGGETPLDLVPGSADYAFPFRTIADAYRLEERLRLLEASDQDKIRIAVVGGGYSGVELA 169
Query: 236 RRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 295
+ +RL+ +G ++ + + T I T T NREAA K L R + + +
Sbjct: 170 CKLADRLQNRGRLRLVEMGTEILRTSTEFNREAATKALEERGIWI-------------DL 216
Query: 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
E + ++ I AD S Y ++ P D+V+WTVG++
Sbjct: 217 ETTTQE--------ITADSISLLYRGQVDP---------IPVDVVIWTVGTQ-------- 251
Query: 356 PNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
+ + LP+ RGQ E TL HP +FA+GD + D+SG+P+P TAQ A QQA
Sbjct: 252 VASVVQSLPVKHTERGQIEVTRTLQAIDHPELFAVGDLAYSLDASGQPVPTTAQAAMQQA 311
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
D+A WN+WA+++DRPLLPF +Q LGEMM LG ++A ++ GV LDG + H R+LAY
Sbjct: 312 DYAAWNVWASLSDRPLLPFEYQGLGEMMTLGIDNATLTGL---GVKLDGQMAHLLRRLAY 368
Query: 474 LIRLPTDEHRLKVGVSWLTK 493
L R+PT +H+LKVG++W+T+
Sbjct: 369 LYRMPTFDHQLKVGLNWITQ 388
>gi|434395007|ref|YP_007129954.1| NADH dehydrogenase [Gloeocapsa sp. PCC 7428]
gi|428266848|gb|AFZ32794.1| NADH dehydrogenase [Gloeocapsa sp. PCC 7428]
Length = 395
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 184/438 (42%), Positives = 252/438 (57%), Gaps = 75/438 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RICILGGGFGGLYTALRL L W +KP+++LVDQS+RF+F P+LYELL+GE+
Sbjct: 3 QQPARICILGGGFGGLYTALRLSQLPW-SSQKPEIVLVDQSDRFLFSPLLYELLTGELQT 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F+++LA TGV+F+++ V + D V L+ G+ + YD LV
Sbjct: 62 WEIAPPFSEILAGTGVRFYQESVTEINIDDQ-------------RVRLQDGVEIPYDRLV 108
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER-------------------- 236
L+LG E LD+V GA +AFPF T++DA R++ +L LE
Sbjct: 109 LALGGETPLDMVAGATSYAFPFRTIDDAYRLEARLRRLEESPVDKIRIAIVGGGYCGVEL 168
Query: 237 --RNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
+ +RLE + ++ I + I T NR AA K L AR V + +
Sbjct: 169 ACKLADRLENRARIRLIEMTDQILRTSPEHNRVAANKALEARGVWI-------------D 215
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
E SV++ E AI LE + + + D+V+WTVG++
Sbjct: 216 LETSVQEVEPQAIA------------LEYKNQVDTIP-----VDIVIWTVGTR------V 252
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
P R L N RGQ T TL V HP IFALGD + RD G+ +PATAQ AFQQAD
Sbjct: 253 APVVRSLPLKQNQRGQLTTTSTLQVIDHPEIFALGDLADCRDVEGQQVPATAQAAFQQAD 312
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+AGWN+WA++ RPLLPFR+Q+LGEMM LG ++A + G+ LDGP+ + AR+LAYL
Sbjct: 313 YAGWNVWASLTQRPLLPFRYQHLGEMMTLGTDNATFTGL---GIQLDGPLAYVARRLAYL 369
Query: 475 IRLPTDEHRLKVGVSWLT 492
R+PT H+LKVG++W+T
Sbjct: 370 YRMPTLGHKLKVGINWIT 387
>gi|428297657|ref|YP_007135963.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Calothrix sp. PCC 6303]
gi|428234201|gb|AFY99990.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Calothrix sp. PCC 6303]
Length = 405
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 182/453 (40%), Positives = 254/453 (56%), Gaps = 86/453 (18%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ +ICILGGGFGGLYTALRL L W+ DKKP+++LVDQS+RF+F P+LYELL+ E++
Sbjct: 3 QQSAKICILGGGFGGLYTALRLSKLPWEGDKKPEIVLVDQSDRFLFSPLLYELLTRELET 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LLANTGV+F C VN H L+ G + YD LV
Sbjct: 63 WEIAPPFVELLANTGVRF--------CQGTVAKVNIEQRLVH-----LQDGSDISYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER-------------------- 236
L+LG E +D+VPGA A+PF + DA R++ +L LE
Sbjct: 110 LALGGETPMDLVPGAEAHAYPFRNVNDAYRLEERLRILEESETDKIRIAIVGAGYSGVEL 169
Query: 237 ----------RNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 286
++ +R ++ ++ + + I T NREAA K L A+ G F+
Sbjct: 170 ACKLADRLGDKSPDRSRDRARLRLVELSDKILGTSPKFNREAATKALEAK------GVFI 223
Query: 287 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS 346
+ E V+ +I+ D S +Y ++ +LV+WTVG+
Sbjct: 224 -------DLETKVE--------SISQDSMSLEYKEQVD---------TIPVELVIWTVGT 259
Query: 347 KPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
+ V P + LP +N RGQ + T+ V HP IFALGD +D+ G+ +PA
Sbjct: 260 R-----VSPV---VQSLPFQVNQRGQIQVTSTMQVLEHPEIFALGDLVDCQDAEGQKIPA 311
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 464
TAQ AFQQAD+ GWN+WA++ +RPLLPFR+Q LGEM+ LG ++ ++ GVTLDGP
Sbjct: 312 TAQAAFQQADYTGWNIWASLTNRPLLPFRYQYLGEMITLGVDNTTLAGL---GVTLDGPF 368
Query: 465 GHSARKLAYLIRLPTDEHRLKVGVSWLTKSAID 497
+ AR+LAYL R+PT EH+LKVG +WLT+ ID
Sbjct: 369 ANIARRLAYLYRMPTLEHQLKVGFNWLTRPVID 401
>gi|300863742|ref|ZP_07108673.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Oscillatoria sp. PCC 6506]
gi|300338249|emb|CBN53819.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Oscillatoria sp. PCC 6506]
Length = 397
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 175/439 (39%), Positives = 243/439 (55%), Gaps = 74/439 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+++PRICILGGGFGGLYTALRL L + +KP+++LVD+ +RF+F P+LYE+L+GE+
Sbjct: 3 QQQPRICILGGGFGGLYTALRLSQLPFAKPQKPEIILVDRCDRFLFSPLLYEILTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LL +TG++F + V + ++ V L+ G + D LV
Sbjct: 63 WEIAPPFEELLKDTGIRFCQGTVAAIDITEK-------------RVQLQDGPEITCDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------------------ 238
L+LG E L++V GAAE AFPF T+ DA R++ +L LE
Sbjct: 110 LALGGETPLNLVSGAAEHAFPFRTISDAYRLEERLRILESSQSDKIRVAVVGGGYSGVEL 169
Query: 239 ----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
+RL E+G ++ I I T NREAA L R+V + +
Sbjct: 170 ACKLSDRLGERGRLRLIEQSDKILQTSPDFNREAANIALEKRRVWI-------------D 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
E SV ES I + KG + I D VLWTVG V
Sbjct: 217 LETSVDAIESDTISLV----------------YKG-QIDILPVDAVLWTVGMI-----VS 254
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
P LH L N RGQ + TL V +P IFALGD + D+ G+ +P++AQVAFQQAD
Sbjct: 255 PMVRSLH-LQQNIRGQLIVEPTLQVVDNPGIFALGDITECVDADGQKVPSSAQVAFQQAD 313
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+ WN+WA++ DRPLLPFR+Q LGEM+ LG ++A + G+ LDG + H AR+LAYL
Sbjct: 314 YTAWNIWASLTDRPLLPFRYQPLGEMLTLGVDNATFAGL---GIKLDGQMAHVARRLAYL 370
Query: 475 IRLPTDEHRLKVGVSWLTK 493
R+PT +H++KVG +W+ +
Sbjct: 371 YRMPTLDHQIKVGFNWIAR 389
>gi|158335839|ref|YP_001517013.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Acaryochloris marina MBIC11017]
gi|158306080|gb|ABW27697.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Acaryochloris marina MBIC11017]
Length = 397
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 174/445 (39%), Positives = 241/445 (54%), Gaps = 76/445 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ +P ICILGGGFGGLYTALRL L W D+++P + LVDQ++ F+F P+LYEL++GE+ +
Sbjct: 3 EHQPTICILGGGFGGLYTALRLSQLPW-DEQQPLIYLVDQNDHFLFSPLLYELVTGELQS 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP +++LLANT V+F + VK + + V L S + YD LV
Sbjct: 62 WEIAPPYSELLANTEVRFIQSAVKEIDVAQQ-------------QVTL-SDQSISYDRLV 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER-------------------- 236
L+LG E L VPG+AE+A PF T++DA R++ +L LE
Sbjct: 108 LALGGETPLHQVPGSAEYALPFRTVQDAYRLEDRLRTLETSAAPKIRVAVVGAGPSGVEL 167
Query: 237 --RNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
+ +RL ++G ++ I I + N+ AA K L R+V +
Sbjct: 168 ACKLADRLGDRGRIRLIERNNQILKSAPEFNQTAAQKALEKRQVW-------------TD 214
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
E S++ +S + DK + DLVLWTVG+ P
Sbjct: 215 LETSIESLDSHEMTLSYKDK-----------------TDTLPVDLVLWTVGTAIAAPIQA 257
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
P LP N GQ TD TL V+ P IFALGD + RD G P P TAQVA QQAD
Sbjct: 258 LP------LPQNDLGQLLTDSTLQVQDSPHIFALGDLADCRDPQGNPNPKTAQVAIQQAD 311
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
GWNLWA++ RPLLPF + +LGEM+ LG + AA+S G+ LDGP+ AR+L YL
Sbjct: 312 CVGWNLWASLTQRPLLPFHYTHLGEMLTLGEDSAAMSGL---GLQLDGPLAFMARRLIYL 368
Query: 475 IRLPTDEHRLKVGVSWLTKSAIDSV 499
R+PT +H+LK+G +W+ K + ++
Sbjct: 369 YRMPTLDHQLKIGFNWMFKPVLSAL 393
>gi|291566917|dbj|BAI89189.1| type 2 NADH dehydrogenase [Arthrospira platensis NIES-39]
Length = 398
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 168/439 (38%), Positives = 242/439 (55%), Gaps = 74/439 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+++ RICILGGGFGGLYTALRL L W + P++ +VD +RFVF P+LYEL++GE+ A
Sbjct: 3 EQRTRICILGGGFGGLYTALRLTQLPWLPTQSPEITIVDSRDRFVFAPLLYELVTGELQA 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F LL +T ++F + G + T V L+ G ++YD LV
Sbjct: 63 WEIAPPFQQLLQDTPIRFIQ------------GTVADIDIT-AQQVQLQDGQFLDYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------------------ 238
L++G E LD+VPGA ++A PF +EDA R+ ++L LE +
Sbjct: 110 LAMGGETPLDIVPGAQQYAIPFRRVEDAYRLQQRLRLLEASDAEKIRVAIIGGGYSGVEL 169
Query: 239 ----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
ERL ++G ++ ++ I + NREAA K LS R+V L +
Sbjct: 170 ACKLAERLGKRGRLRLVDRGEEILKSAPDFNREAAQKALSERQVWL-------------D 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
E +VK ++ +I LE + + L D+V+WTVG++
Sbjct: 217 LETTVKSLDAESI------------TLEYRDQVDTL-----PVDIVMWTVGTQ------T 253
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
P R L N+ Q + L V HP IFALGD + D+ G+ +P TAQ AFQQAD
Sbjct: 254 PDIVRSLPLKQNSEHQIIINPKLQVIEHPEIFALGDLADSHDAEGKKVPKTAQAAFQQAD 313
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+AGWNLWA++ RPLL F +Q LGEMM LG+++A ++ G+ LDG + H AR+L YL
Sbjct: 314 YAGWNLWASLTGRPLLSFHYQALGEMMTLGKDNATLTGL---GIKLDGQLAHVARRLIYL 370
Query: 475 IRLPTDEHRLKVGVSWLTK 493
RLPT EH+++V +W+++
Sbjct: 371 YRLPTWEHQMRVAFNWISR 389
>gi|354566051|ref|ZP_08985224.1| NADH dehydrogenase [Fischerella sp. JSC-11]
gi|353546559|gb|EHC16007.1| NADH dehydrogenase [Fischerella sp. JSC-11]
Length = 397
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 190/448 (42%), Positives = 255/448 (56%), Gaps = 78/448 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ K RICILGGGFGGLYTALRL L W+ KP+++LVDQS+RFVF P+LYELL+GE+
Sbjct: 3 EHKTRICILGGGFGGLYTALRLSQLPWESLPKPEIVLVDQSDRFVFSPLLYELLTGELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LL +TGV+F++ V G++ T V L+ G + YD LV
Sbjct: 63 WEIAPPFEELLTDTGVRFYQAAVS--------GID-----TQQRRVYLQDGPEIGYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF----------------- 239
L+LG E LD+VPGA +A+PF T+ D R++ +L LE +
Sbjct: 110 LALGGETPLDIVPGATCYAYPFRTVTDVYRLEERLRVLEESDTDKIRVAIVGGGYSGVEL 169
Query: 240 -----ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
+RL +G + I + I T NREAA K L R G F+ RV
Sbjct: 170 ACKLADRLGSRGRFRLIELTDQILRTSPEFNREAARKALEER------GIFIDLETRV-- 221
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
EA IA D S +Y KG I DLV+WTVG + V
Sbjct: 222 -EA------------IAQDTISLEY--------KGQVDNI-PVDLVIWTVGIR-----VS 254
Query: 355 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
P + +LPL N RGQ T TL V HP IFALGD + RD+ G+ +PATAQ AFQQ
Sbjct: 255 PV---VRNLPLKQNQRGQITTTPTLQVLDHPEIFALGDLAECRDAEGQLVPATAQAAFQQ 311
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
AD+A WN+WA + RP +PFR+Q+LGEMM LG ++A ++ G+ L+G + + AR+LA
Sbjct: 312 ADYAAWNIWANLTHRPQIPFRYQHLGEMMALGTDNATLTGL---GIKLEGSLAYVARRLA 368
Query: 473 YLIRLPTDEHRLKVGVSWLTKSAIDSVA 500
YL R+PT +H+LKVG +WL + I++++
Sbjct: 369 YLYRMPTLDHKLKVGFNWLARPIIETLS 396
>gi|359459750|ref|ZP_09248313.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Acaryochloris sp. CCMEE 5410]
Length = 397
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 173/445 (38%), Positives = 245/445 (55%), Gaps = 76/445 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ +P ICILGGGFGGLYTALRL L W D+++P + LVDQ++ F+F P+LYEL++GE+ +
Sbjct: 3 EHQPTICILGGGFGGLYTALRLSQLPW-DEQQPLIYLVDQNDHFLFSPLLYELVTGELQS 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP +++LLANT V+F + VK + + V+L S + YD LV
Sbjct: 62 WEIAPPYSELLANTEVRFIQSAVKEIDVAQQ-------------QVIL-SDQSISYDRLV 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF----------------- 239
L+LG E L VPG+AE+A PF T++DA ++ +L LE +
Sbjct: 108 LALGGETPLHQVPGSAEYALPFRTVQDAYCLEDRLRALETSDAPKIRVAVVGAGPSGVEL 167
Query: 240 -----ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
+RL ++G ++ I I + N+ AA K L R+V +
Sbjct: 168 ACKLADRLGDRGRIRLIERNNQILKSAPEFNQTAAQKALEKRQVW-------------TD 214
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
E S++ ++AA + + Y ++ DLVLWTVG+ +
Sbjct: 215 LETSIE--------SLAAHEMTLSY---------KDKTDTLPVDLVLWTVGTA-----IA 252
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
PP L LP N GQ TD TL V+ P IFALGD + RD G P P TAQVA QQAD
Sbjct: 253 PPIQAL-PLPQNDLGQLLTDPTLQVQDSPHIFALGDLADCRDPQGNPNPKTAQVAIQQAD 311
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
GWNLWA++ RPLL F + +LGEM+ LG + AA+S G+ LDGP+ AR+L YL
Sbjct: 312 CVGWNLWASLTQRPLLSFHYTHLGEMLTLGEDSAAMSGL---GLQLDGPLAFMARRLIYL 368
Query: 475 IRLPTDEHRLKVGVSWLTKSAIDSV 499
R+PT +H+LK+G +W+ K + ++
Sbjct: 369 YRMPTLDHQLKIGFNWMFKPVLSAL 393
>gi|409990772|ref|ZP_11274103.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Arthrospira platensis str. Paraca]
gi|409938372|gb|EKN79705.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Arthrospira platensis str. Paraca]
Length = 399
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/435 (38%), Positives = 238/435 (54%), Gaps = 74/435 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL L W + P++ +VD +RFVF P+LYEL++GE+ AWEIA
Sbjct: 7 RICILGGGFGGLYTALRLTQLPWLPTQSPEITIVDSRDRFVFAPLLYELVTGELQAWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F LL +T ++F + G + T V L+ G ++YD LVL++G
Sbjct: 67 PPFQQLLQDTPIRFIQ------------GTVADIDIT-AQQVQLQDGQFLDYDRLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN---------------------- 238
E LD+VPGA ++A PF +EDA R+ +L LE +
Sbjct: 114 GETPLDIVPGAQQYAIPFRRVEDAYRLQERLRLLEASDAEKIRVAIIGGGYSGVELACKL 173
Query: 239 FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
ERL ++G ++ ++ I + NREAA K LS R+V L + E +
Sbjct: 174 AERLGKRGRLRLVDRGEEILKSAPDFNREAAQKALSERQVWL-------------DLETT 220
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
VK ++ +I LE + + L D+V+WTVG++ P
Sbjct: 221 VKSLDAESI------------TLEYRDQVDTL-----PVDIVMWTVGTQ------TPDIV 257
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
R L N+ Q + L V HP IFALGD + D+ G+ +P TAQ AFQQAD+AGW
Sbjct: 258 RSLPLKQNSEHQIIINPKLQVIEHPEIFALGDLADSHDAEGKKVPKTAQAAFQQADYAGW 317
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
NLWA++ RPLL F +Q LGEMM LG+++A ++ G+ LDG + H AR+L YL RLP
Sbjct: 318 NLWASLTGRPLLSFHYQALGEMMTLGKDNATLTGL---GIKLDGQLAHVARRLIYLYRLP 374
Query: 479 TDEHRLKVGVSWLTK 493
T EH+++V +W+++
Sbjct: 375 TWEHQMRVAFNWISR 389
>gi|86609207|ref|YP_477969.1| pyridine nucleotide-disulfide oxidoreductase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557749|gb|ABD02706.1| pyridine nucleotide-disulfide oxidoreductase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 405
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 191/440 (43%), Positives = 251/440 (57%), Gaps = 73/440 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTAL L W + PQ+ LVD+ ERFVF P+LYELL+GE++ WE+A
Sbjct: 3 RICILGGGFGGLYTALELSRQPWPE--PPQITLVDRQERFVFAPLLYELLTGEMEDWEVA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF DLL VQF + V+ + P V LE G +EYD LVL+LG
Sbjct: 61 PRFQDLLPPGSVQFRRGSVQAIDPQAR-------------RVELEDGQSLEYDALVLALG 107
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN---------------------- 238
E L+ VPGAAEFAFPF TL DA R+ L LE R+
Sbjct: 108 GETPLESVPGAAEFAFPFRTLADAQRLRAHLKALEDRDPAQPVALAIAGAGASGVELACK 167
Query: 239 -FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
+RL +G ++ I + + I +REAA + L+ R+VQ+ L V I +G
Sbjct: 168 LADRLGWRGRIRLIELGSQILSGFALSSREAAQEALAQRRVQVELQTKVLGIEALG---- 223
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL---VLWTVGSKPLLPHVE 354
E+GA P + L+LQ LE+Q DL VLWTVG++P
Sbjct: 224 -----ENGAPP----------FHLQLQ----RLETQEIATDLVDAVLWTVGTRPAAVIAN 264
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
DLP RG+ + TL P IFALGD++A+ D+ G+P+PATAQ AFQQA
Sbjct: 265 ------LDLPKTERGRLQVLSTLQTPTFPEIFALGDAAAVVDAEGKPVPATAQAAFQQAG 318
Query: 415 FAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
+ WNLWA + +RPLLPFR+ +LGEM+ LG + A +S + G+TL GP+G+ AR+ AY
Sbjct: 319 YCAWNLWALLTQERPLLPFRYFSLGEMLSLGVDTAVLSA--LGGLTLTGPLGYLARRTAY 376
Query: 474 LIRLPTDEHRLKVGVSWLTK 493
L+RLPT EH+LKVG +W+T+
Sbjct: 377 LVRLPTLEHQLKVGWNWITR 396
>gi|428779514|ref|YP_007171300.1| NADH dehydrogenase, FAD-containing subunit [Dactylococcopsis salina
PCC 8305]
gi|428693793|gb|AFZ49943.1| NADH dehydrogenase, FAD-containing subunit [Dactylococcopsis salina
PCC 8305]
Length = 398
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 166/441 (37%), Positives = 245/441 (55%), Gaps = 78/441 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + RICILGGGFGGLYTALRL L W +P+++LVDQ +RF+F P+LYELL+ E+
Sbjct: 3 ESRSRICILGGGFGGLYTALRLSQLPWDHQPQPEIILVDQRDRFLFTPLLYELLTNELQT 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F ++LA+T +QF + V GV+ + V L ++YDWLV
Sbjct: 63 WEIAPPFTEILADTKIQFRQGTVT--------GVD-----VNRQQVQLADQSQLDYDWLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE---------------- 240
L++G + ++ V GAA FAFPF +L+DA +D +L LE + E
Sbjct: 110 LAMGGKTPIEAVSGAATFAFPFHSLKDAYHLDERLRSLENSDQEKIRIAIVGGGYSGVEI 169
Query: 241 ------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
R+ ++ ++ I I T NRE A K LS R++ L +
Sbjct: 170 ACKLRDRVGDRARIRIIERGEMILKTSPEFNRETAQKALSDREIWL-------------D 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS--KPLLPH 352
E SV+ I A + Y KG +S D+V+WTVG+ L+ +
Sbjct: 217 TETSVEA--------ITAQDITLWY--------KG-KSDTIPVDVVIWTVGTTVSELVKN 259
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
+ +LP N +G+ + + TL V + +FALGD + D +G+ +P TAQVAFQQ
Sbjct: 260 L--------NLPHNEQGKIKIEPTLQVVDNSSVFALGDLAFCEDGNGKVVPTTAQVAFQQ 311
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
+D+ WN+WA I RPLLPF++ NLGEM++LG ++ +++ +GV LDG + + AR+ A
Sbjct: 312 SDYCAWNIWATITGRPLLPFKYYNLGEMLVLGTDNGSLT---AQGVKLDGMLAYLARRFA 368
Query: 473 YLIRLPTDEHRLKVGVSWLTK 493
YL R+PT EH+L VG +W+T+
Sbjct: 369 YLSRMPTPEHQLTVGSNWITQ 389
>gi|423066857|ref|ZP_17055647.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Arthrospira platensis C1]
gi|406711622|gb|EKD06822.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Arthrospira platensis C1]
Length = 407
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 168/442 (38%), Positives = 239/442 (54%), Gaps = 75/442 (16%)
Query: 75 PDKKKP-RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGE 133
P ++P RICILGGGFGGLYTALRL L W + P++ +VD +RFVF P+LYEL++GE
Sbjct: 9 PMTEQPTRICILGGGFGGLYTALRLTQLPWLPTQTPEITIVDSRDRFVFAPLLYELVTGE 68
Query: 134 VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ AWEIAP F LL T ++F + G + T V L+ G ++YD
Sbjct: 69 LQAWEIAPPFEQLLEETPIRFIQ------------GTVADIDIT-ARQVQLQDGQFLDYD 115
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN--------------- 238
LVL++G E LD+VPG+ ++A PF +EDA R+ +L LE +
Sbjct: 116 RLVLAMGGETPLDIVPGSQQYAIPFRRVEDAYRLQERLRILEASDAEKIRVAIIGGGYSG 175
Query: 239 -------FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 291
ERL ++G ++ + I + NREAA K LS R+V L
Sbjct: 176 VELACKLAERLGKRGRLRLVERGEKILKSAPDFNREAAQKALSERQVWL----------- 224
Query: 292 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 351
+ E +V+ ++ +I LE + + L D+V+WTVG++
Sbjct: 225 --DLETTVQSLDAESI------------TLEYRDQVDTL-----PVDIVMWTVGTQ---- 261
Query: 352 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 411
P R L N Q + L V HP IFALGD + D+ G+ +P TAQ AFQ
Sbjct: 262 --TPDLVRSLPLKQNTEHQIIINPQLQVIEHPEIFALGDLADCHDAEGKKVPKTAQAAFQ 319
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
QAD+AGWNLWA++ RPLL F +Q LGEMM LG+++A ++ G+ LDG + H AR+L
Sbjct: 320 QADYAGWNLWASLTGRPLLSFHYQALGEMMTLGKDNATLTGL---GIKLDGQLAHVARRL 376
Query: 472 AYLIRLPTDEHRLKVGVSWLTK 493
YL RLPT EH+++V +W+++
Sbjct: 377 IYLYRLPTLEHQMRVAFNWISR 398
>gi|17231586|ref|NP_488134.1| NADH dehydrogenase [Nostoc sp. PCC 7120]
gi|17133229|dbj|BAB75793.1| NADH dehydrogenase [Nostoc sp. PCC 7120]
Length = 409
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 180/449 (40%), Positives = 253/449 (56%), Gaps = 82/449 (18%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RI ILGGGFGGLYTALR+ L W+ +KP+++LVDQS+RF+F P+LYELL+GE+ +
Sbjct: 3 EQTKRIVILGGGFGGLYTALRVSQLPWETQQKPEIVLVDQSDRFLFSPLLYELLTGELQS 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LL TG++F++ V G++ H L+ G + YD LV
Sbjct: 63 WEIAPPFIELLEGTGIRFYQAVVS--------GIDIDQQRVH-----LQDGPEIPYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE---------------- 240
L+LG E LD+VPGA +A+PF T+ D R++ +L LE + E
Sbjct: 110 LTLGGETPLDLVPGAISYAYPFRTIADTYRLEERLRVLEESDAEKIRVAIVGAGYSGVEL 169
Query: 241 ------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
RL E+G + + + I T NREAA K L A+ G F+ +
Sbjct: 170 ACKLADRLGERGRFRLVEISDQILRTSPDFNREAAKKALDAK------GVFI-------D 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPLLPH 352
E V+ +I + S +Y ++Q+ DLV+WTVG++
Sbjct: 217 LETKVE--------SIGQNTISLEY-----------KNQVDTIPVDLVIWTVGTR----- 252
Query: 353 VEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
N + LP N RGQ TL V HP IFALGD + D+ G+ +PATAQ AF
Sbjct: 253 ---VTNVVKSLPFKQNQRGQITNTPTLQVLDHPDIFALGDLADCIDAEGQQVPATAQAAF 309
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
QQAD+A WN+WA++ RPLLPFR+Q LGEMM LG ++A ++ GV LDG + + AR+
Sbjct: 310 QQADYAAWNIWASLTQRPLLPFRYQQLGEMMALGTDNATLTGL---GVKLDGSLAYVARR 366
Query: 471 LAYLIRLPTDEHRLKVGVSWLTKSAIDSV 499
LAYL RLPT +H+LKVG +WL + I+++
Sbjct: 367 LAYLYRLPTLDHQLKVGFNWLVRPIIETI 395
>gi|427727887|ref|YP_007074124.1| NADH dehydrogenase, FAD-containing subunit [Nostoc sp. PCC 7524]
gi|427363806|gb|AFY46527.1| NADH dehydrogenase, FAD-containing subunit [Nostoc sp. PCC 7524]
Length = 402
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 180/442 (40%), Positives = 249/442 (56%), Gaps = 74/442 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI ILGGGFGGLYTALRL L W+ +KP+++LVDQS+RF+F P+LYELL+GE+ WEIA
Sbjct: 7 RIVILGGGFGGLYTALRLSQLPWESGQKPEIVLVDQSDRFLFSPLLYELLTGELQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P FA+LL TGV+F++ V G++ H L+ G + D LVL+LG
Sbjct: 67 PPFAELLQGTGVRFYQAIVS--------GIDIDQQRVH-----LQDGPELPCDRLVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-------------------- 240
E LD+V GA +A+PF ++ DA R++ +L LE + E
Sbjct: 114 GETPLDLVSGATSYAYPFRSITDAYRLEERLRVLEESDAEKIRVAIVGAGYSGVELACKL 173
Query: 241 --RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
RL ++G + I + I T NREAA K L AR V L + E
Sbjct: 174 ADRLGDRGRFRLIEISDQILRTSPEFNREAAKKALEARGVFL-------------DLETK 220
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
V+ +I D S +Y ++ D+V+WTVG++ P
Sbjct: 221 VE--------SIGQDTISLEYKHQID---------TIPVDVVIWTVGTRV------APVV 257
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
R L N RGQ T TL V HP IFALGD + D+ G+ +PATAQ AFQQAD+A W
Sbjct: 258 RSLPLKQNQRGQITTTPTLQVLDHPEIFALGDLADCLDAEGQQIPATAQAAFQQADYAAW 317
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
N+WA++ RPLLPFR+Q LGEMM LG+++A ++ G+ LDG + + AR+LAYL R+P
Sbjct: 318 NIWASLTHRPLLPFRYQQLGEMMALGKDNATLTSL---GIKLDGTLAYLARRLAYLYRMP 374
Query: 479 TDEHRLKVGVSWLTKSAIDSVA 500
T +H+LKVG +WL + I++++
Sbjct: 375 TLDHQLKVGFNWLVRPIIETIS 396
>gi|75907033|ref|YP_321329.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anabaena variabilis ATCC 29413]
gi|75700758|gb|ABA20434.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Anabaena variabilis ATCC 29413]
Length = 409
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 180/449 (40%), Positives = 253/449 (56%), Gaps = 82/449 (18%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ RI ILGGGFGGLYTALRL L W+ +KP+++LVDQS+RF+F P+LYELL+GE+ +
Sbjct: 3 EQTKRIVILGGGFGGLYTALRLSQLPWETQQKPEIVLVDQSDRFLFSPLLYELLTGELQS 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP F +LL TG++F++ V G++ H L+ G + YD LV
Sbjct: 63 WEIAPPFIELLEGTGIRFYQAVVS--------GIDIDQQRVH-----LQDGPEIPYDRLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE---------------- 240
L+LG E LD+VPGA +A+PF T+ D R++ +L LE + E
Sbjct: 110 LTLGGETPLDLVPGATSYAYPFRTIADTYRLEERLRVLEESDAEKIRVAIVGAGYSGVEL 169
Query: 241 ------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
RL E+G + + + I T NREAA K L A+ G F+ +
Sbjct: 170 ACKLADRLGERGRFRLVEISDQILRTSPDFNREAAKKALDAK------GVFI-------D 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPLLPH 352
E V+ +I + S +Y ++Q+ DLV+WTVG++
Sbjct: 217 LETKVE--------SIGQNTISLEY-----------KNQVDTIPVDLVIWTVGTR----- 252
Query: 353 VEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
N + LP N RGQ TL V HP IFALGD + D+ G+ +PATAQ AF
Sbjct: 253 ---VTNVVKSLPFKQNQRGQITNTPTLQVLDHPDIFALGDLADCIDAEGQQVPATAQAAF 309
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
QQAD+A WN+WA++ RPLLPFR+Q LGEM+ LG ++A ++ GV LDG + + AR+
Sbjct: 310 QQADYAAWNIWASLTQRPLLPFRYQQLGEMLALGTDNATLTGL---GVKLDGSLAYVARR 366
Query: 471 LAYLIRLPTDEHRLKVGVSWLTKSAIDSV 499
LAYL RLPT +H+LKVG +WL + I+++
Sbjct: 367 LAYLYRLPTLDHQLKVGFNWLVRPIIETI 395
>gi|376003428|ref|ZP_09781239.1| NADH dehydrogenase [Arthrospira sp. PCC 8005]
gi|375328231|emb|CCE16992.1| NADH dehydrogenase [Arthrospira sp. PCC 8005]
Length = 398
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 166/435 (38%), Positives = 235/435 (54%), Gaps = 74/435 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL L W + P++ +VD +RFVF P+LYEL++GE+ AWEIA
Sbjct: 7 RICILGGGFGGLYTALRLTQLPWLPTQTPEITIVDSRDRFVFAPLLYELVTGELQAWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F LL T ++F + G + T V L+ G ++YD LVL++G
Sbjct: 67 PPFEQLLEETPIRFIQ------------GTVADIDIT-AQQVQLQDGQFLDYDRLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN---------------------- 238
E LD+VPG+ ++A PF +EDA R+ +L LE +
Sbjct: 114 GETPLDIVPGSQQYAIPFRRVEDAYRLQERLRILEASDAEKIRVAIIGGGYSGVELACKL 173
Query: 239 FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
ERL ++G ++ + I + NREAA K LS R+V L + E +
Sbjct: 174 AERLGKRGRLRLVERGEKILKSAPDFNREAAQKALSERQVWL-------------DLETT 220
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
V+ ++ +I LE + + L D+V+WTVG++ P
Sbjct: 221 VQSLDAESI------------TLEYRDQVDTL-----PVDIVMWTVGTQ------TPDLV 257
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
R L N Q + L V HP IFALGD + D+ G+ +P TAQ AFQQAD+AGW
Sbjct: 258 RSLPLKQNTEHQIIINPQLQVIEHPEIFALGDLADCHDAEGKKVPKTAQAAFQQADYAGW 317
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
NLWA++ RPLL F +Q LGEMM LG+++A ++ G+ LDG + H AR+L YL RLP
Sbjct: 318 NLWASLTGRPLLSFHYQALGEMMTLGKDNATLTGL---GIKLDGQLAHVARRLIYLYRLP 374
Query: 479 TDEHRLKVGVSWLTK 493
T EH+++V +W+++
Sbjct: 375 TLEHQMRVAFNWISR 389
>gi|209528007|ref|ZP_03276489.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Arthrospira maxima CS-328]
gi|209491564|gb|EDZ91937.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Arthrospira maxima CS-328]
Length = 398
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 166/435 (38%), Positives = 235/435 (54%), Gaps = 74/435 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL L W + P++ +VD +RFVF P+LYEL++GE+ AWEIA
Sbjct: 7 RICILGGGFGGLYTALRLTQLPWLPTQTPEITIVDSRDRFVFAPLLYELVTGELQAWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F LL T ++F + G + T V L+ G ++YD LVL++G
Sbjct: 67 PPFEQLLEETPIRFIQ------------GTVADIDIT-ARQVQLQDGQFLDYDRLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN---------------------- 238
E LD+VPG+ ++A PF +EDA R+ +L LE +
Sbjct: 114 GETPLDIVPGSQQYAIPFRRVEDAYRLQERLRILEASDAEKIRVAIIGGGYSGVELACKL 173
Query: 239 FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
ERL ++G ++ + I + NREAA K LS R+V L + E +
Sbjct: 174 AERLGKRGRLRLVERGEKILKSAPDFNREAAQKALSERQVWL-------------DLETT 220
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
V+ ++ +I LE + + L D+V+WTVG++ P
Sbjct: 221 VQSLDAESI------------TLEYRDQVDTL-----PVDIVMWTVGTQ------TPDLV 257
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
R L N Q + L V HP IFALGD + D+ G+ +P TAQ AFQQAD+AGW
Sbjct: 258 RSLPLKQNTEHQIIINPQLQVIEHPEIFALGDLADCHDAEGKKVPKTAQAAFQQADYAGW 317
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
NLWA++ RPLL F +Q LGEMM LG+++A ++ G+ LDG + H AR+L YL RLP
Sbjct: 318 NLWASLTGRPLLSFHYQALGEMMTLGKDNATLTGL---GIKLDGQLAHVARRLIYLYRLP 374
Query: 479 TDEHRLKVGVSWLTK 493
T EH+++V +W+++
Sbjct: 375 TLEHQMRVAFNWISR 389
>gi|427709789|ref|YP_007052166.1| NADH dehydrogenase [Nostoc sp. PCC 7107]
gi|427362294|gb|AFY45016.1| NADH dehydrogenase [Nostoc sp. PCC 7107]
Length = 400
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 183/437 (41%), Positives = 252/437 (57%), Gaps = 82/437 (18%)
Query: 90 GGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLAN 149
GGLYTALRL L W+ +KP+++LVDQS+RF+F P+LYELL+GE+ WEIAP FA+LL
Sbjct: 17 GGLYTALRLSQLPWESQQKPEIVLVDQSDRFLFSPLLYELLTGELQTWEIAPPFAELLQG 76
Query: 150 TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209
TGV+F++ V G++ T V L+ G + YD LVL+LG E LD+VP
Sbjct: 77 TGVRFYQALVS--------GID-----TDQQRVQLQDGPEIAYDRLVLALGGETPLDMVP 123
Query: 210 GAAEFAFPFSTLEDACRVDRKLSELERRN----------------------FERLEEKGI 247
GA +A PF T+ DA R++++L L+ + +RL EKG
Sbjct: 124 GATSYALPFRTINDAYRLEQRLQILQESDADKMRIAIVGAGYSGVELACKLADRLGEKGR 183
Query: 248 VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI 307
++ I + I T NRE A K L AR G F+ + E V+
Sbjct: 184 LRLIEISDQILRTSPEFNRETAKKALDAR------GVFI-------DLETKVE------- 223
Query: 308 PNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
+I AD S +Y ++QI DLVLWTVG++ ++P V +LP
Sbjct: 224 -SIGADTISLEY-----------KNQIDTIPVDLVLWTVGTQ-VVPVV-------RNLPF 263
Query: 366 --NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
N R Q T TL V HP IFALGD + RD+ + +PATAQ AFQQAD+ WN+WA+
Sbjct: 264 KQNQRHQITTTSTLQVLDHPEIFALGDLADCRDAEDQQIPATAQAAFQQADYTAWNIWAS 323
Query: 424 INDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHR 483
++DRPLLPFR+Q LGEMM LG ++A ++ GV LDG +G+ AR+LAYL R+PT EH+
Sbjct: 324 LSDRPLLPFRYQKLGEMMALGVDNATLTGL---GVKLDGSLGYVARRLAYLYRMPTLEHQ 380
Query: 484 LKVGVSWLTKSAIDSVA 500
LKVG +WL + I++++
Sbjct: 381 LKVGFNWLVRPIIETIS 397
>gi|218440048|ref|YP_002378377.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7424]
gi|218172776|gb|ACK71509.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 7424]
Length = 397
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 172/432 (39%), Positives = 237/432 (54%), Gaps = 78/432 (18%)
Query: 90 GGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLAN 149
GGLYTALRL+ W + KP+++LVD+S+RF+F P+LYEL++GE+ +WEIAP F +LLAN
Sbjct: 16 GGLYTALRLDEFSWSNSHKPEIILVDKSDRFLFSPLLYELVTGEMQSWEIAPPFDELLAN 75
Query: 150 TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209
T ++F V L SD L V L++ + YD LV++LG + LD VP
Sbjct: 76 TNIRFHHGCVSDLNISDSL-------------VHLDNQETLSYDKLVIALGGQTPLDFVP 122
Query: 210 GAAEFAFPFSTLEDACRVDRKLSELERRNFE----------------------RLEEKGI 247
GA E+A PF TL+DA + +KL ELE+ N E RL E+G
Sbjct: 123 GAKEYAIPFRTLQDAYHLGQKLKELEQSNSEKIRVVVVGGGYSGVELACKLADRLGERGR 182
Query: 248 VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI 307
++ + + I + P NR AA K L R V + L I
Sbjct: 183 IRIVELGEDILNSSPPHNRNAAKKALEERLVWIDL---------------------ETKI 221
Query: 308 PNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL-- 365
I AD S Y KG + ADLVLWTVG+K ++ + LPL
Sbjct: 222 EEITADTVSLLY--------KG-QVDTIPADLVLWTVGTK--------VSDFIKSLPLPQ 264
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425
N G+ T+ L + HP I+ LGD + RD +G+ +PATAQVA QQAD+ WNLWA+I
Sbjct: 265 NRAGKLVTNSFLQAENHPNIYILGDIADCRDKNGQQVPATAQVALQQADYCAWNLWASIM 324
Query: 426 DRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLK 485
+RP+LPF++Q LGEMM LG ++A V+ G+ LDG + + R+L YL R PT +HRL
Sbjct: 325 ERPMLPFQYQGLGEMMTLGVDNATVNSL---GLKLDGTLAYLTRRLLYLYRFPTLKHRLA 381
Query: 486 VGVSWLTKSAID 497
VG +WLT+ ++
Sbjct: 382 VGFNWLTQPIME 393
>gi|443325802|ref|ZP_21054480.1| NADH dehydrogenase, FAD-containing subunit [Xenococcus sp. PCC
7305]
gi|442794571|gb|ELS03980.1| NADH dehydrogenase, FAD-containing subunit [Xenococcus sp. PCC
7305]
Length = 395
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 167/441 (37%), Positives = 243/441 (55%), Gaps = 74/441 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +ICI+GGGFGGLYTALRL L + ++KP++ L+D+ +RF+F P+LYEL++ E+ +WE
Sbjct: 4 KQKICIVGGGFGGLYTALRLHELPTEVEEKPEITLIDKGDRFLFSPLLYELITEELQSWE 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP F ++LANTG+ F + V N + V +++ ++YD LVLS
Sbjct: 64 IAPPFEEVLANTGIVFRQGEV----------TNIDLEAKQ---VTVDNSSTIDYDKLVLS 110
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN-------------------- 238
G + L++VPGA A PF +L+DA R+ KL LE +
Sbjct: 111 TGGKTPLNIVPGAIANAIPFRSLKDAYRIIEKLRHLEESHQDIIRVAIVGAGYSGVELAC 170
Query: 239 --FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296
+RL ++G V+ I+ T I T NRE AL L R++ + + E
Sbjct: 171 KVADRLGDQGRVRIIDRGTQILDNATDFNREKALTALEERQIWI-------------DLE 217
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
V + E+ E+ KG E DLVLWTVG++ V
Sbjct: 218 TEVAKVEAD----------------EIALTFKG-EVDTIPVDLVLWTVGNQ-----VSTL 255
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+L +L + RG + TL V + ++ALGD + +D G LPATAQVAFQQ+D+
Sbjct: 256 TEKL-NLEKSDRGLLKLQNTLQVLNNDDVYALGDIAECQDEHGNILPATAQVAFQQSDYC 314
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
WN+WA IN +PLLPFR+Q LGEMM LG ++AA+S G+ LDG + + AR+L YL R
Sbjct: 315 AWNIWAQINHKPLLPFRYQALGEMMALGADNAALSGL---GLQLDGSLAYIARRLIYLYR 371
Query: 477 LPTDEHRLKVGVSWLTKSAID 497
LPT +H+L VG++W+T+ ++
Sbjct: 372 LPTLKHQLTVGLNWITQPIVE 392
>gi|434400100|ref|YP_007134104.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Stanieria cyanosphaera PCC 7437]
gi|428271197|gb|AFZ37138.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Stanieria cyanosphaera PCC 7437]
Length = 395
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 170/442 (38%), Positives = 250/442 (56%), Gaps = 74/442 (16%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K RICILGGGFGGLYTALRL L W+ +++P+++LVD+S+RF+F P+LYEL++ E+ W
Sbjct: 3 EKQRICILGGGFGGLYTALRLSQLPWEKEQQPEIVLVDKSDRFLFAPLLYELVTEELQTW 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
EIAP F ++LA+TG+ F++ V + V L+ + Y LV+
Sbjct: 63 EIAPPFEEILADTGIVFYQASVTDI-------------DIEAKRVKLDHSSELTYTKLVI 109
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS----------------------ELE 235
++G + L+ VPGA A PF TL DA R+ +L EL
Sbjct: 110 AMGGKTPLNTVPGAILHAIPFRTLNDAYRLREELRLLEQSNRDKIRVAVVGGGYSGVELA 169
Query: 236 RRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 295
+ +RL +KG ++ I I + N+EAA K L RK+ L +
Sbjct: 170 CKIADRLGDKGRIRIIERGDKILKDSSQFNQEAATKALEKRKIWL-------------DV 216
Query: 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
E V+Q E+ +I A KG + DLVLWTVG++ V
Sbjct: 217 ETEVEQVEADSI----------------SLAYKG-KVDTIPVDLVLWTVGNQ-----VSE 254
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+L LP +++G +T+ L V H IFALGD ++ +D++G+ +PATAQVAFQQ+D+
Sbjct: 255 FMRKL-PLPQDSQGLLKTNANLQVLEHEDIFALGDIASCQDATGQLVPATAQVAFQQSDY 313
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
WNLWA+++DRPLLPFR+Q LGEMM LG ++A++S G+ LDG + + AR+L YL
Sbjct: 314 CAWNLWASMSDRPLLPFRYQPLGEMMTLGVDNASISGL---GLNLDGSLAYIARRLIYLY 370
Query: 476 RLPTDEHRLKVGVSWLTKSAID 497
RLPT +H+L VG +W+T+ ++
Sbjct: 371 RLPTLKHQLTVGFNWITQPLVE 392
>gi|22298679|ref|NP_681926.1| type 2 NADH dehydrogenase [Thermosynechococcus elongatus BP-1]
gi|22294859|dbj|BAC08688.1| type 2 NADH dehydrogenase [Thermosynechococcus elongatus BP-1]
Length = 401
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 173/451 (38%), Positives = 238/451 (52%), Gaps = 82/451 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ +ICILGGGFGGLYTALRL W P++ LVD S+RFVF P+LYEL++GE++AWE
Sbjct: 8 RSQICILGGGFGGLYTALRLAQFPWS--SPPEITLVDHSDRFVFTPLLYELITGELEAWE 65
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSD---HLGVNGPMACTHGGTVLLESGLIVEYDWL 195
IAP F +LL +T V F + V + + HLG P Y+ L
Sbjct: 66 IAPPFVELLRDTPVVFHQGAVTTIDLQEKTVHLGKGDPFT----------------YEKL 109
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN----------------- 238
VL+LG E +PG A A F TL DA R++ L E +
Sbjct: 110 VLALGGETPKSTIPGVAADALTFRTLSDAYRLEEALQRCEHSDRDRIRVVVVGAGPSGVE 169
Query: 239 -----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
ERL +G ++ ++ I + NR+AAL+ L R V + L + R
Sbjct: 170 LACKLAERLGSRGRIRLVDRNPEILKSSPEFNRKAALRALEDRGVWIDLETTPVALTR-- 227
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
D+ L+ + + L D+VLWTVG+ V
Sbjct: 228 -----------------------DRISLQYKDRVDELP-----VDIVLWTVGTA-----V 254
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
P L DLP A G+ + TL V HP IFALGD++ D G+P+P TAQ AFQQA
Sbjct: 255 SPVIAAL-DLPKTASGRLQVTPTLQVVDHPDIFALGDAADAVDEQGQPIPHTAQAAFQQA 313
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
D+ WNLWA+++DRPLLP R+ +LGEM+ LGR+ AA++ G+TLDGP+ + AR+LAY
Sbjct: 314 DYVAWNLWASLSDRPLLPCRYSHLGEMLTLGRDRAALAGL---GLTLDGPLAYLARRLAY 370
Query: 474 LIRLPTDEHRLKVGVSWLTKSAIDSVALLQS 504
L R+PT EH+LKVG++W+ K +D + + S
Sbjct: 371 LYRMPTLEHQLKVGLNWIAKPFLDLLTTIAS 401
>gi|67920273|ref|ZP_00513793.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Crocosphaera watsonii WH 8501]
gi|67857757|gb|EAM52996.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Crocosphaera watsonii WH 8501]
Length = 396
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 167/441 (37%), Positives = 238/441 (53%), Gaps = 78/441 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICI+GGGFGGLYTALRL W++D+ P+++L+D+S+RF+F P+LYEL++ E+ WEIA
Sbjct: 7 RICIVGGGFGGLYTALRLTQFTWEEDQTPEIILIDKSDRFLFTPLLYELITEEMQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + +LLA+T ++F + V G+N + L++ + YD LVL++G
Sbjct: 67 PPYEELLADTPIRFHQGCVT--------GIN-----IENKQLELDNHNSLHYDRLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-------------------- 240
+ LD G ++A PF TLEDA R+ +L LE + E
Sbjct: 114 GKTPLDNFSGVKDYAIPFRTLEDAYRIKERLRLLEDKKAEKIRIAVVGGGYSGVELACKF 173
Query: 241 --RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
RL + G ++ + I NRE A L +R+V F+ + E
Sbjct: 174 ADRLGDTGRIRLVERGDKILSNSPEFNREVAENALESRRV------FI-------DLETE 220
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
V Q ++ D S Y KG I DLVLWTVG++ +
Sbjct: 221 VTQ--------VSFDSVSLSY--------KGKIDSI-PVDLVLWTVGTQVI--------E 255
Query: 359 RLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ +LPL + G + L HP IFA+GD +A D S P+PATAQ AFQQ+D+
Sbjct: 256 MVKELPLEKTSNGLLKITPELQAIEHPEIFAIGDLAAYYDESKEPIPATAQTAFQQSDYC 315
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
WNLWA+I +RPLLPF +Q LGEMM LG ++A +S GV LDG +G+ AR+L YL R
Sbjct: 316 AWNLWASITERPLLPFAYQPLGEMMALGIDNATLSGL---GVNLDGSLGYIARRLVYLYR 372
Query: 477 LPTDEHRLKVGVSWLTKSAID 497
LPT +H++ VG++W+TK D
Sbjct: 373 LPTLKHQINVGINWMTKPLTD 393
>gi|416375762|ref|ZP_11683393.1| NADH dehydrogenase [Crocosphaera watsonii WH 0003]
gi|357266476|gb|EHJ15097.1| NADH dehydrogenase [Crocosphaera watsonii WH 0003]
Length = 396
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 167/441 (37%), Positives = 238/441 (53%), Gaps = 78/441 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICI+GGGFGGLYTALRL W++D+ P+++L+D+S+RF+F P+LYEL++ E+ WEIA
Sbjct: 7 RICIVGGGFGGLYTALRLTQFTWEEDQTPEIILIDKSDRFLFTPLLYELITEEMQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + +LLA+T ++F + V G+N + L++ + YD LVL++G
Sbjct: 67 PPYEELLADTPIRFHQGCVT--------GIN-----IENKQLELDNHNSLHYDRLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-------------------- 240
+ LD G ++A PF TLEDA R+ +L LE + E
Sbjct: 114 GKTPLDNFSGVKDYAIPFRTLEDAYRIKERLRLLEDKKAEKIRIAVVGGGYSGVELACKF 173
Query: 241 --RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
RL + G ++ + I NRE A L +R+V F+ + E
Sbjct: 174 ADRLGDTGRIRLVERGDKILSNSPEFNREVAENALESRRV------FI-------DLETE 220
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
V Q ++ D S Y KG I DLVLWTVG++ +
Sbjct: 221 VTQ--------VSFDSVSLSY--------KGKIDSI-PVDLVLWTVGTQVI--------E 255
Query: 359 RLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ +LPL + G + L HP IFA+GD +A D S P+PATAQ AFQQ+D+
Sbjct: 256 MVKELPLEKTSNGLLKITPELQAIEHPEIFAIGDLAACYDESKEPIPATAQTAFQQSDYC 315
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
WNLWA+I +RPLLPF +Q LGEMM LG ++A +S GV LDG +G+ AR+L YL R
Sbjct: 316 AWNLWASITERPLLPFAYQPLGEMMALGIDNATLSGL---GVNLDGSLGYIARRLIYLYR 372
Query: 477 LPTDEHRLKVGVSWLTKSAID 497
LPT +H++ VG++W+TK D
Sbjct: 373 LPTLKHQINVGINWMTKPLTD 393
>gi|443321614|ref|ZP_21050660.1| NADH dehydrogenase, FAD-containing subunit [Gloeocapsa sp. PCC
73106]
gi|442788659|gb|ELR98346.1| NADH dehydrogenase, FAD-containing subunit [Gloeocapsa sp. PCC
73106]
Length = 397
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 167/443 (37%), Positives = 237/443 (53%), Gaps = 78/443 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ +CILGGGFGGLYTALRL L W++ KP++ LVD+S+RF+F P+LYELL+GE+ AWE
Sbjct: 5 RKHVCILGGGFGGLYTALRLNELPWENSGKPKITLVDKSDRFLFSPLLYELLTGEMQAWE 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP +++LLA+T VQF + VK + + V LE G ++YD LV+
Sbjct: 65 IAPSYSELLADTQVQFKQGSVKNIDLTQK-------------RVKLEDGTELDYDRLVMG 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN-------------------- 238
G LD VPGA E+A PF TL DA + KL +LE +
Sbjct: 112 TGGNTPLDFVPGAQEYALPFRTLGDAMVLADKLKQLENSDAKYIRIVIAGGGYSGVELAC 171
Query: 239 --FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296
+RL +G ++ I I T NR+ A K L A++V L L ++ I
Sbjct: 172 KLADRLGNRGRIRIIERADQILRTSPEFNRDTAKKALEAKQVWLDLETEIQSIE-----A 226
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
AS+ G I I +LVLWTVG++
Sbjct: 227 ASITIAYKGKIDTIP-------------------------VNLVLWTVGTR--------V 253
Query: 357 NNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
+ + LPL N G T+ L V+G P I+ALGD + +D++G+ +P TAQ A QQ+D
Sbjct: 254 SEFIAQLPLKHNNSGFLVTNSLLQVEGDPHIYALGDLADCQDATGQQVPKTAQAAIQQSD 313
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+ WN+WA++ RP L FR+Q LGEMM LG N+A ++ G+ L+G + AR+L YL
Sbjct: 314 YCAWNIWASLTGRPPLAFRYQPLGEMMTLGINEATLTGL---GLKLEGTTAYLARRLIYL 370
Query: 475 IRLPTDEHRLKVGVSWLTKSAID 497
RLPT +H+L VG++WL + ++
Sbjct: 371 YRLPTRKHQLTVGLNWLAQPLLE 393
>gi|307151366|ref|YP_003886750.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
gi|306981594|gb|ADN13475.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
Length = 397
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 169/432 (39%), Positives = 234/432 (54%), Gaps = 78/432 (18%)
Query: 90 GGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLAN 149
GGLYTALRL W++ KP+++LVD+S+RF+F P+LYEL++GE+ +WEIAP F +LLA+
Sbjct: 16 GGLYTALRLSEFSWENSHKPEIVLVDKSDRFLFSPLLYELVTGELQSWEIAPPFEELLAD 75
Query: 150 TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209
T + F H G + V L++G + YD LVL+LG + LD VP
Sbjct: 76 TKIHF------------HHGCVNQIDLEQ-SQVQLDNGKNLTYDKLVLALGGQTPLDFVP 122
Query: 210 GAAEFAFPFSTLEDACRVDRKLSELERRNF----------------------ERLEEKGI 247
GA E+A PF TLEDA R+ ++L ELE+ +RL E+G
Sbjct: 123 GAKEYAIPFRTLEDAYRLAQRLKELEQSQLDKIRVVVVGGGYSGVELACKLADRLGERGR 182
Query: 248 VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI 307
++ + + +I T NR AA K L R V L + E V++
Sbjct: 183 IRIVEMSESILNTSPEFNRNAAKKALEERLVWL-------------DLETKVEE------ 223
Query: 308 PNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPL 365
I A+ S Y ++ P DLVLWTVG+K + + P NR L
Sbjct: 224 --ITAETISLVYKGQVDP---------IPVDLVLWTVGTKVSDFIKSLSLPQNRAGKLVT 272
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425
N+ QAE HP I+ LGD + RD G+ +PATAQVA QQAD+ WN+WA+I
Sbjct: 273 NSFLQAE--------NHPSIYVLGDLADCRDKDGQLVPATAQVAIQQADYCAWNVWASIM 324
Query: 426 DRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLK 485
RPLLPFR+Q LGEMM LG ++A +S GV +DG + + AR+L YL R PT +HRL
Sbjct: 325 GRPLLPFRYQGLGEMMTLGIDNATLSSM---GVKMDGTLAYLARRLLYLYRFPTLKHRLA 381
Query: 486 VGVSWLTKSAID 497
VG +WL++ ++
Sbjct: 382 VGFNWLSRPVLE 393
>gi|126658527|ref|ZP_01729675.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. CCY0110]
gi|126620269|gb|EAZ90990.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. CCY0110]
Length = 396
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 163/437 (37%), Positives = 235/437 (53%), Gaps = 78/437 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICI+GGGFGGLYTALRL W+ D+ P+++L+D+S+RF+F P+LYEL++ E+ WEIA
Sbjct: 7 RICIVGGGFGGLYTALRLTQFPWEGDQTPEIILIDKSDRFLFTPLLYELITEEMQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + +LLA T ++F + V + + + L++ + YD LVL++G
Sbjct: 67 PPYEELLAGTAIRFHQGCVTNIDIENQ-------------QLQLDNHHSLHYDRLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-------------------- 240
+ LD G ++A PF TLEDA R+ +L LE + E
Sbjct: 114 GKTPLDNFSGVKDYAIPFRTLEDAYRIKERLRLLEEKEAEKIRIAIVGGGYSGVELGCKL 173
Query: 241 --RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
RL +KG ++ + I + N+E A L +R+V F+ + E
Sbjct: 174 ADRLGDKGRIRLVERGEKILSSSPEFNQEVAQTALESRRV------FI-------DLETE 220
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
V Q S +I A KG + DLVLWTVG++ + +
Sbjct: 221 VTQVTSDSI----------------SLAYKG-KIDTIPVDLVLWTVGTQVI--------D 255
Query: 359 RLHDLPLNARGQA--ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ +LPL + + + L V HP IFA+GD +A D S +PATAQ AFQQ+D+
Sbjct: 256 MVKELPLEKTSKELLKINSHLQVIDHPEIFAVGDLAACYDESKNLIPATAQTAFQQSDYC 315
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
WNLWA+I RPLLPF +Q LGEMM LG ++A +S GV LDGP G+ AR+L YL R
Sbjct: 316 AWNLWASITHRPLLPFAYQPLGEMMALGVDNATLSGL---GVNLDGPFGYMARRLIYLYR 372
Query: 477 LPTDEHRLKVGVSWLTK 493
LPT +H++ VG++W+TK
Sbjct: 373 LPTLKHQINVGINWITK 389
>gi|390439986|ref|ZP_10228347.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis sp. T1-4]
gi|389836633|emb|CCI32471.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis sp. T1-4]
Length = 397
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 162/438 (36%), Positives = 237/438 (54%), Gaps = 78/438 (17%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+ICILGGGFGGLYTALRL L WQD PQ+ L+D+S+RF+F P+LYEL++ E+ +WEI
Sbjct: 6 PKICILGGGFGGLYTALRLSQLPWQDQHPPQITLIDKSDRFLFSPLLYELVTSELQSWEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F++LLANT V F + V + ++H + L++ + YD LV++L
Sbjct: 66 APPFSELLANTPVDFQQGTVTAIDVNNH-------------KITLDNQKDICYDRLVIAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN--------------------- 238
G + LD +PGA A PF +LEDA R+ +L LE+ +
Sbjct: 113 GGQSSLDFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDKIRVAIIGGGYSGVELACK 172
Query: 239 -FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
+RL E+G ++ I + I T NR+ A K L R V L + E
Sbjct: 173 LADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL-------------DLET 219
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
+V AD +D+ L+ + I + DL+LWTV P P
Sbjct: 220 TV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIASP-- 255
Query: 358 NRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ +LP+ N R + ++ L +P I+A+GD++ RD +P ATAQVA QQ+D+
Sbjct: 256 -LIANLPIAHNERKLLKVNQYLQTVENPSIYAIGDAADGRDQEDKPYAATAQVALQQSDY 314
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L YL
Sbjct: 315 CAWNIWASFHDKPALPFRYQPLGEMLTLGVDEATISGL---GLELAGPLAHLTRRLVYLY 371
Query: 476 RLPTDEHRLKVGVSWLTK 493
RLPT H++ V +W+T+
Sbjct: 372 RLPTLNHQIAVAFNWITQ 389
>gi|425463872|ref|ZP_18843202.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9809]
gi|389828794|emb|CCI29977.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9809]
Length = 397
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 162/438 (36%), Positives = 236/438 (53%), Gaps = 78/438 (17%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+++RF+F P+LYEL++ E+ +WEI
Sbjct: 6 PKICILGGGFGGLYTALRLSQLPWTDQHPPQITLIDKNDRFLFSPLLYELVTSELQSWEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F++LLANT V F + V + ++H + L++ + YD LV++L
Sbjct: 66 APPFSELLANTPVDFQQGTVTAIDVNNH-------------KITLDNKNDICYDRLVIAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN--------------------- 238
G + LD +PGA A PF +LEDA R+ +L LE+ +
Sbjct: 113 GGQSSLDFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDKIRVAIIGGGYSGVELVCK 172
Query: 239 -FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
+RL E+G ++ I + I NRE A K L R V L + E
Sbjct: 173 LADRLGERGRIRLIERNSDIIALSPQFNRETAKKALEKRLVWL-------------DLET 219
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
+V AD +D+ L+ + I + DL+LWTV P P
Sbjct: 220 TV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIASP-- 255
Query: 358 NRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
L +LPL N R + ++ L +P+I+A+GD++ RD +P ATAQVA QQ+D+
Sbjct: 256 -LLANLPLAHNERKLLKVNQYLQTVENPKIYAIGDAADSRDQDDKPYAATAQVALQQSDY 314
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L YL
Sbjct: 315 CAWNIWASFHDKPALPFRYQPLGEMLTLGIDEATISGL---GLELAGPLAHLTRRLVYLY 371
Query: 476 RLPTDEHRLKVGVSWLTK 493
RLPT H++ V +W+T+
Sbjct: 372 RLPTLNHQIAVAFNWITQ 389
>gi|428201132|ref|YP_007079721.1| NADH dehydrogenase, FAD-containing subunit [Pleurocapsa sp. PCC
7327]
gi|427978564|gb|AFY76164.1| NADH dehydrogenase, FAD-containing subunit [Pleurocapsa sp. PCC
7327]
Length = 412
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 167/449 (37%), Positives = 245/449 (54%), Gaps = 78/449 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K+ RICILGGGFGGLYTALRL W + +P++ L+D+S+RF+F P+LYEL++GE+
Sbjct: 17 NKQTIRICILGGGFGGLYTALRLTQFPWDNSYQPEITLIDKSDRFLFSPLLYELMTGEMQ 76
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+WEIAP F +LL+ T + F K C + G++ + L++ + YD L
Sbjct: 77 SWEIAPPFEELLSGTDILF-----KQACVT---GID-----IEAREIQLDNETSISYDKL 123
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN----------------- 238
V+++G + LD++PGA + A PF TL DA R+ +L LE+ +
Sbjct: 124 VVAIGGKTPLDIIPGAKDHAIPFRTLNDAYRLGERLRILEQSDADKIRVAIVGGGYSGVE 183
Query: 239 -----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
+RL E+G ++ I + TI T NREAA K L R V L L V+
Sbjct: 184 LACKLADRLGERGRLRLIEKQATILATSPQFNREAAKKALEKRLVWLDLDTEVQ------ 237
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
+I +D S Y KG + D+VLWTVG++
Sbjct: 238 ---------------SITSDTISLLY--------KG-QIDTIPVDIVLWTVGTQ------ 267
Query: 354 EPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 411
+ + LPL + RG T+ L P I+ALGD + +D +G+ +PATAQ A Q
Sbjct: 268 --VSESIQKLPLKHDQRGLLTTNAFLQASDRPEIYALGDVANCQDITGQQVPATAQSALQ 325
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
Q+DF WN+WA+I RPLLPFR+ ++GEMM LG ++A +S GV L+G + R+L
Sbjct: 326 QSDFCAWNIWASITRRPLLPFRYFSMGEMMTLGIDNATISGL---GVKLEGIPAYILRRL 382
Query: 472 AYLIRLPTDEHRLKVGVSWLTKSAIDSVA 500
YL RLPT +H+L VG++W+T+ I+ +A
Sbjct: 383 IYLYRLPTLKHQLNVGLNWITQPVIELLA 411
>gi|218245551|ref|YP_002370922.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 8801]
gi|218166029|gb|ACK64766.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 8801]
Length = 398
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 159/442 (35%), Positives = 238/442 (53%), Gaps = 76/442 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL WQ+ + P+++L+DQ +RF+F P+LYEL++ E+ +WEIA
Sbjct: 7 RICILGGGFGGLYTALRLSQFPWQNGQYPEIILIDQRDRFLFTPLLYELITDEMQSWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P F +LL NT ++F + V + ++HL ++ + ++YD+LVL++
Sbjct: 67 PPFEELLINTRIRFHQGCVTAINVETNHLEIDHRHS--------------LQYDYLVLAI 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE------------------- 240
G + LD V GA ++A PF +L+DA R+ +L LE E
Sbjct: 113 GGKTPLDQVVGAKDYAIPFRSLDDAYRIKERLRLLETSQVEKIRVAVVGGGSSGVELACK 172
Query: 241 ---RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
RL E G ++ + + NR+ A + L R+V + + E
Sbjct: 173 LADRLGETGRIRLVERGEEVLSHSPEFNRKVAQEALEKRRVWI-------------DLET 219
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
V + S + L KG + DL+LWTVG++ E
Sbjct: 220 EVTEVRSDS----------------LSLCYKG-QVDTIPVDLILWTVGTQV----SELVK 258
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
N DL N++G + + L H I+A+GD + D +G+ +PATAQ AFQQ+D+
Sbjct: 259 NT--DLKHNSQGLLKVNPELQAINHTNIYAIGDLADCEDITGQKIPATAQAAFQQSDYCA 316
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
WN+WA+I RPLLPFR+Q LGEMM LG ++AA++ G+ LDG + + AR+L YL RL
Sbjct: 317 WNIWASITHRPLLPFRYQPLGEMMALGSDNAALNGL---GIQLDGGLAYIARRLIYLYRL 373
Query: 478 PTDEHRLKVGVSWLTKSAIDSV 499
PT +H+L VG+SW+T +D +
Sbjct: 374 PTLKHQLNVGLSWITSPILDWI 395
>gi|257058595|ref|YP_003136483.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 8802]
gi|256588761|gb|ACU99647.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 8802]
Length = 398
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 159/442 (35%), Positives = 237/442 (53%), Gaps = 76/442 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTALRL WQ+ + P+++L+DQ +RF+F P+LYEL++ E+ +WEIA
Sbjct: 7 RICILGGGFGGLYTALRLSQFPWQNGQYPEIILIDQRDRFLFTPLLYELITDEMQSWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P F +LL NT ++F + V + ++HL ++ + ++YD+LVL++
Sbjct: 67 PPFEELLINTRIRFHQGCVTAINVETNHLEIDHRHS--------------LQYDYLVLAI 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE------------------- 240
G + LD V GA ++A PF +L+DA R+ +L LE E
Sbjct: 113 GGKTPLDQVVGAKDYAIPFRSLDDAYRIKERLRLLETSQVEKIRVAVVGGGSSGVELACK 172
Query: 241 ---RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
RL E G ++ + + NR+ A + L R+V + + E
Sbjct: 173 LADRLGETGRIRLVERGEEVLSHSPEFNRKVAQEALEKRRVWI-------------DLET 219
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
V + S + L KG + DL+LWTVG++ E
Sbjct: 220 EVTEVRSDS----------------LSLCYKG-QVDTIPVDLILWTVGTQV----SELVK 258
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
N DL N +G + + L H I+A+GD + D +G+ +PATAQ AFQQ+D+
Sbjct: 259 NT--DLKHNTQGLLKVNPELQAINHTNIYAIGDLADCEDITGQKIPATAQAAFQQSDYCA 316
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
WN+WA+I RPLLPFR+Q LGEMM LG ++AA++ G+ LDG + + AR+L YL RL
Sbjct: 317 WNIWASITHRPLLPFRYQPLGEMMALGSDNAALNGL---GIQLDGGLAYIARRLIYLYRL 373
Query: 478 PTDEHRLKVGVSWLTKSAIDSV 499
PT +H+L VG+SW+T +D +
Sbjct: 374 PTLKHQLNVGLSWITSPILDWI 395
>gi|425468488|ref|ZP_18847504.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9701]
gi|389884862|emb|CCI34887.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9701]
Length = 397
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 161/438 (36%), Positives = 236/438 (53%), Gaps = 78/438 (17%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+++RF+F P+LYEL++ E+ +WEI
Sbjct: 6 PKICILGGGFGGLYTALRLSQLPWTDQHTPQITLIDKNDRFLFSPLLYELVTSELQSWEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F++LLANT V F + V + ++H + L++ + YD LV++L
Sbjct: 66 APPFSELLANTPVDFQQGTVTAIDVNNH-------------KITLDNQNDICYDRLVIAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN--------------------- 238
G + LD +PGA A PF +LEDA R+ +L LE+ +
Sbjct: 113 GGQSSLDFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDKIRVAIIGGGYSGVELACK 172
Query: 239 -FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
+RL E+G ++ I + I T NR+ A K L R V L + E
Sbjct: 173 LADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL-------------DLET 219
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
+V AD +D+ L+ + I + DL+LWTV P P
Sbjct: 220 TV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIASP-- 255
Query: 358 NRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
L +LP+ N R + ++ L +P I+A+GD++ RD +P ATAQVA QQ+D+
Sbjct: 256 -LLANLPIAHNERKLLKVNQYLQTVENPSIYAIGDAADSRDQEDKPYAATAQVALQQSDY 314
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L YL
Sbjct: 315 CAWNIWASFHDKPALPFRYQPLGEMLSLGVDEATISGL---GLELAGPLAHLTRRLVYLY 371
Query: 476 RLPTDEHRLKVGVSWLTK 493
RLPT H++ V +W+T+
Sbjct: 372 RLPTLNHQIAVAFNWITQ 389
>gi|425461171|ref|ZP_18840651.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9808]
gi|389825974|emb|CCI23812.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9808]
Length = 397
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 161/439 (36%), Positives = 236/439 (53%), Gaps = 78/439 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P+ICILGGGFGGLYTALRL L W D +PQ+ L+D+S+ F+F P+LYEL++ E+ +WE
Sbjct: 5 NPKICILGGGFGGLYTALRLSQLPWPDQHRPQITLIDKSDHFLFSPLLYELVTSELQSWE 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP F++LLANT V F + V + ++H + L++ + YD LV++
Sbjct: 65 IAPPFSELLANTPVDFQQGTVTAIDVNNH-------------KITLDNQKDICYDRLVIA 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN-------------------- 238
LG + LD +PGA A PF +LEDA R+ +L LE+ +
Sbjct: 112 LGGQSSLDFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDKIRVAIIGGGYSGVELAC 171
Query: 239 --FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296
+RL E+G ++ I + I T NR+ A K L R V L + E
Sbjct: 172 KLADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL-------------DLE 218
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
+V AD +D+ L+ + I + DL+LWTV P P
Sbjct: 219 TTV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIASP- 255
Query: 357 NNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
L +LP+ N R + ++ L +P I+A+GD++ RD +P ATAQVA QQ+D
Sbjct: 256 --LLANLPIAHNERKLLKVNQYLQTVENPSIYAIGDAADGRDQEDKPYAATAQVALQQSD 313
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L YL
Sbjct: 314 YCAWNIWASFHDKPALPFRYQPLGEMLTLGIDEATISGL---GLQLAGPLAHLTRRLVYL 370
Query: 475 IRLPTDEHRLKVGVSWLTK 493
RLPT H++ V +W+T+
Sbjct: 371 YRLPTLNHQIAVAFNWITQ 389
>gi|422303870|ref|ZP_16391221.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9806]
gi|389791102|emb|CCI13067.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9806]
Length = 397
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 161/438 (36%), Positives = 236/438 (53%), Gaps = 78/438 (17%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+S+RF+F P+LYEL++ E+ +WEI
Sbjct: 6 PKICILGGGFGGLYTALRLSQLPWTDQHPPQITLIDKSDRFLFSPLLYELVTSELQSWEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F++LLANT V F + V + ++H + L++ + YD LV++L
Sbjct: 66 APPFSELLANTPVDFQQGTVTAIDVNNH-------------KITLDNQNDICYDRLVIAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN--------------------- 238
G + LD +PGA A PF +LEDA R+ +L LE+ +
Sbjct: 113 GGQSSLDFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDKIRVAIIGGGYSGVELACK 172
Query: 239 -FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
+RL E+G ++ I + I T NR+ A K L R V L + E
Sbjct: 173 LADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL-------------DLET 219
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
+V AD +D+ L+ + I + DL+LWTV P P
Sbjct: 220 TV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIASP-- 255
Query: 358 NRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ +LP+ N R + ++ L +P I+A+GD++ RD +P ATAQVA QQ+D+
Sbjct: 256 -LIANLPIAHNERKLLKVNQYLQTVENPSIYAIGDAADGRDQEDKPYAATAQVALQQSDY 314
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L YL
Sbjct: 315 CAWNIWASFHDKPALPFRYQPLGEMLTLGVDEATISGL---GLELAGPLAHLTRRLVYLY 371
Query: 476 RLPTDEHRLKVGVSWLTK 493
RLPT H++ V +W+T+
Sbjct: 372 RLPTLNHQIAVAFNWITQ 389
>gi|428218241|ref|YP_007102706.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pseudanabaena sp. PCC 7367]
gi|427990023|gb|AFY70278.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pseudanabaena sp. PCC 7367]
Length = 402
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 160/445 (35%), Positives = 247/445 (55%), Gaps = 79/445 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ICI+GGGFGGLYTAL L L W ++KP ++L+D+S+RF+F P+LYEL++ E++ WEIA
Sbjct: 3 QICIVGGGFGGLYTALHLTRLPW--NQKPSIVLIDKSDRFLFTPLLYELITAELEPWEIA 60
Query: 141 PRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P F +LL NTGV+F + + + ++G +A + YD L+L+L
Sbjct: 61 PSFVELLKNTGVRFIHATATAIDTENRRISLSGEVAPAE-----------ISYDRLLLAL 109
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN--------------------- 238
G E +++VPGA E+A PF TL+DA R++ +L++LE +
Sbjct: 110 GGETPINIVPGATEYALPFRTLKDAQRLNERLTQLEASSKDKIRVCIAGGGSSGVELACK 169
Query: 239 -FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
+RL ++G V+ ++ +TI T NR AA K L AR V + +
Sbjct: 170 ISDRLGDRGRVRLVDRNSTILTDSTTANRAAAEKALLARNVWI-------------DLST 216
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
SV Q G + +L+ G + I D+V+WTVG++ +
Sbjct: 217 SVVQINDGEV------------VLDY-----GGGNDILPVDIVMWTVGNRM--------S 251
Query: 358 NRLHDLPLNAR---GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
+ LPL G+ T+ TL V+ HP +FA+GD + RD+ G+ LPA AQVA+QQ+
Sbjct: 252 KLVESLPLPHSPRGGRVITEPTLQVQYHPELFAIGDLALCRDADGQLLPANAQVAYQQSQ 311
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+ N+WA++N R L PF++ LGE + LG DAA+ S T++G AR+L YL
Sbjct: 312 YCATNIWASLNQRHLTPFKYLELGEFLSLGIEDAAM--SVFNQFTVEGVPAIMARRLIYL 369
Query: 475 IRLPTDEHRLKVGVSWLTKSAIDSV 499
+R+PT EH++KVG++WLTK ++++
Sbjct: 370 MRMPTLEHQMKVGLNWLTKPMVNAI 394
>gi|425448279|ref|ZP_18828257.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9443]
gi|389730972|emb|CCI04917.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9443]
Length = 397
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 160/438 (36%), Positives = 235/438 (53%), Gaps = 78/438 (17%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+S+RF+F P+LYEL++ E+ +WEI
Sbjct: 6 PKICILGGGFGGLYTALRLSQLPWTDQHPPQITLIDKSDRFLFSPLLYELVTSELQSWEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F++LLANT V F + V + ++H + L++ + YD LV++L
Sbjct: 66 APPFSELLANTPVNFQQGTVTAINVNNH-------------KITLDNQNDICYDRLVIAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN--------------------- 238
G + L+ +PGA A PF +LEDA R+ +L LE+ +
Sbjct: 113 GGQSSLEFLPGAKTHAIPFRSLEDAYRLQDRLKTLEQSDRDKIRVAIIGGGYSGVELACK 172
Query: 239 -FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
+RL E+G ++ I I T NR+ A K L R V L + E
Sbjct: 173 LADRLGERGRIRLIERNPDILGPSTQFNRDTAKKALEKRLVWL-------------DLET 219
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
+V AD +D+ L+ + I + DL+LWTV P P
Sbjct: 220 TV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIASP-- 255
Query: 358 NRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ +LP+ N R + ++ L +P I+A+GD++ RD +P ATAQVA QQ+D+
Sbjct: 256 -LIANLPIAHNERKLLKVNQYLQTVENPSIYAIGDAADSRDQEDKPYAATAQVALQQSDY 314
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L YL
Sbjct: 315 CAWNIWASFHDKPALPFRYQPLGEMLTLGIDEATISGL---GLELAGPLAHLTRRLVYLY 371
Query: 476 RLPTDEHRLKVGVSWLTK 493
RLPT H++ V +W+T+
Sbjct: 372 RLPTLNHQIAVAFNWITQ 389
>gi|425454624|ref|ZP_18834354.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9807]
gi|389804676|emb|CCI16149.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9807]
Length = 397
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 160/438 (36%), Positives = 236/438 (53%), Gaps = 78/438 (17%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+ICILGGGFGGLYTALRL L WQD PQ+ L+D+S+RF+F P+LYEL++ E+ +WEI
Sbjct: 6 PKICILGGGFGGLYTALRLSQLPWQDQHPPQITLIDKSDRFLFSPLLYELVTSELQSWEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F++LLANT V F + V + ++H + L++ + YD LV++L
Sbjct: 66 APPFSELLANTPVNFQQGTVTAININNH-------------KITLDNQNDICYDRLVIAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN--------------------- 238
G + L+ +PGA A PF +LEDA R+ +L LE+ +
Sbjct: 113 GGQSSLEFLPGAKTHAIPFRSLEDAYRLQDRLKTLEQSDRDKIRVAIIGGGYSGVELACK 172
Query: 239 -FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
+RL E+G ++ I I T NR+ A K L R V L + E
Sbjct: 173 LADRLGERGRIRLIERNPDILGPSTQFNRDTAKKALEKRLVWL-------------DLET 219
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
+V AD +D+ L+ + I + DL+LWTV P+ +
Sbjct: 220 TV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS--PIASAL---- 256
Query: 358 NRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ +LPL N R + ++ L + I+A+GD++ RD +P ATAQVA QQ+D+
Sbjct: 257 --IANLPLAHNERKLLKVNQYLQTVENSSIYAIGDAADSRDQEDKPYAATAQVALQQSDY 314
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L YL
Sbjct: 315 CAWNIWASFHDKPALPFRYQPLGEMLTLGIDEATISGL---GLELAGPLAHLTRRLVYLY 371
Query: 476 RLPTDEHRLKVGVSWLTK 493
RLPT H++ V +W+T+
Sbjct: 372 RLPTLNHQIAVAFNWITQ 389
>gi|86605567|ref|YP_474330.1| pyridine nucleotide-disulfide oxidoreductase [Synechococcus sp.
JA-3-3Ab]
gi|86554109|gb|ABC99067.1| pyridine nucleotide-disulfide oxidoreductase [Synechococcus sp.
JA-3-3Ab]
Length = 404
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 190/440 (43%), Positives = 248/440 (56%), Gaps = 74/440 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTAL L W + PQ+ LVD+ ERFVF P+LYELL+GE++ WE+A
Sbjct: 3 RICILGGGFGGLYTALELICRPWPE--PPQITLVDRQERFVFAPLLYELLTGEMEEWEVA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF DLL GV+F + V+ + DH V L G +EYD LVL+LG
Sbjct: 61 PRFQDLLPE-GVEFRRGAVQSVDLQDH-------------RVFLAEGQTLEYDALVLALG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN---------------------- 238
E L VPGA E AFPF TL DA R+ L LE R+
Sbjct: 107 GETPLQGVPGATELAFPFRTLADAQRLRAHLQTLEARDPAQAIHLAIVGAGASGVELACK 166
Query: 239 -FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
+RL +G ++ I + + I P +REAA L+ R+VQ+ L V I +G
Sbjct: 167 LADRLGSRGRIRLIELGSQILSGFAPSSREAAQAALAQRRVQVELQTKVLGIEALG---- 222
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL---VLWTVGSKPLLPHVE 354
E+GA P + L+LQ L +Q DL VLWTVG++P
Sbjct: 223 -----ENGAPP----------FRLQLQ----RLAAQEMATDLVDGVLWTVGTRPAAVIAN 263
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
DLP RG+ + TL P IFALGD++A+ D+SG+P+PATAQ AFQQA
Sbjct: 264 ------LDLPKTERGRLQVLPTLQTPTFPEIFALGDAAAVLDASGQPVPATAQAAFQQAG 317
Query: 415 FAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
+ WNLWA + +RPLLPFR+ +LGEM+ LG + A VS + G+TL GP+G+ AR+ AY
Sbjct: 318 YCAWNLWALLTQERPLLPFRYFSLGEMLSLGVDAAVVST--LAGLTLSGPLGYLARRAAY 375
Query: 474 LIRLPTDEHRLKVGVSWLTK 493
L+RLPT EH+LKVG +W+ +
Sbjct: 376 LVRLPTLEHQLKVGWNWIAR 395
>gi|427714402|ref|YP_007063026.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
6312]
gi|427378531|gb|AFY62483.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
6312]
Length = 396
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 164/441 (37%), Positives = 238/441 (53%), Gaps = 78/441 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ ILGGGFGGLYTALRL L W+D+ P++ LVDQ++RF+F P LYELL+GE++ WEIA
Sbjct: 4 KVVILGGGFGGLYTALRLGQLPWEDEATPEITLVDQADRFLFTPFLYELLTGELETWEIA 63
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F+++LA+T +QF + +V + + L P A + YD+LVL+LG
Sbjct: 64 PPFSEILADTPIQFCQAQVSHINLVEKLIALSPQAT-------------LAYDYLVLALG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER----------------------RN 238
VPG + A F TL DA + +L LE +
Sbjct: 111 GTTPTGQVPGVTDHALMFRTLADAYTLGERLKTLENSRQDKIRIVIVGAGPSGVELACKL 170
Query: 239 FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
ERL +G ++ ++ + I N+E A + L R+V L L
Sbjct: 171 SERLGNRGRIRLVDRNSQILGGSPSFNQETAQRALEERQVWLDLD--------------- 215
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE--ADLVLWTVGSKPLLPHVEPP 356
PE ++A+ + KY + Q+ E DLV+WTVG++ V
Sbjct: 216 -TTPEW-----LSANTIALKY-----------KDQVDELPVDLVIWTVGTE-----VAGA 253
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
L +LP N RG+ T TL V +P +FALGD + +RD +G+ +P TAQ AFQ+AD+
Sbjct: 254 IQAL-ELPKNERGRILTTPTLQVMDYPDLFALGDLADVRDQTGQQVPTTAQAAFQEADYV 312
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
GWN+WA++N RPLLPF + +LGEM+ LG + AA++ G+ LDG + + R+LAYL R
Sbjct: 313 GWNVWASLNHRPLLPFSYSHLGEMLTLGTDSAALAGL---GLQLDGSLAYLVRRLAYLYR 369
Query: 477 LPTDEHRLKVGVSWLTKSAID 497
+PT EH+LKVG W+ +D
Sbjct: 370 MPTLEHQLKVGAKWVLSPLMD 390
>gi|172035071|ref|YP_001801572.1| type 2 NADH dehydrogenase [Cyanothece sp. ATCC 51142]
gi|354551921|ref|ZP_08971229.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. ATCC 51472]
gi|171696525|gb|ACB49506.1| type 2 NADH dehydrogenase [Cyanothece sp. ATCC 51142]
gi|353555243|gb|EHC24631.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. ATCC 51472]
Length = 396
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 163/441 (36%), Positives = 235/441 (53%), Gaps = 78/441 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICI+GGGFGGLYTALRL W++D+ P+++L+D+++RF+F P+LYEL++ E+ WEIA
Sbjct: 7 RICIVGGGFGGLYTALRLTQFPWEEDQTPEIILIDKNDRFLFTPLLYELITEEMQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + +LLA T V+F + C +D N + L++ + YD LVL++G
Sbjct: 67 PPYEELLAGTTVRFHQG-----CVTDIDIDNQQLQ--------LDNHHSLHYDRLVLAMG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-------------------- 240
+ LD G ++A PF TLE+A R+ +L LE + E
Sbjct: 114 GKTPLDNFSGVKDYAIPFRTLENAYRIKERLRLLEEKEAEKIRIAIVGGGYSGVELACKL 173
Query: 241 --RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
RL + G ++ + I NR+ A L AR++ FV + E
Sbjct: 174 ADRLGDTGRIRLVERGEKILKDSPEFNRDVAQTALEARRI------FV-------DLETE 220
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
V Q S +I A KG + DLVLWTVG++
Sbjct: 221 VTQVSSDSI----------------SLAYKG-KIDTIPVDLVLWTVGTQ--------VTE 255
Query: 359 RLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ +LPL +G + + L V +P IFA+GD A D S +PATAQ AFQQ+D+
Sbjct: 256 MIKELPLQKTPKGLLKINSQLQVIDNPEIFAIGDLVACYDESQNLIPATAQTAFQQSDYC 315
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
WNLWA+I+ RPLL F +Q LGEMM LG ++A +S G+ LDGP+G+ AR+L YL R
Sbjct: 316 AWNLWASISHRPLLSFAYQPLGEMMALGIDNATLSGL---GINLDGPLGYMARRLIYLYR 372
Query: 477 LPTDEHRLKVGVSWLTKSAID 497
LPT +H++ VG++W+TK D
Sbjct: 373 LPTLKHQINVGINWITKPLTD 393
>gi|425451052|ref|ZP_18830874.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 7941]
gi|389767793|emb|CCI06880.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 7941]
Length = 397
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 159/439 (36%), Positives = 234/439 (53%), Gaps = 78/439 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+S+ F+F P+LYEL++ E+ +WE
Sbjct: 5 NPKICILGGGFGGLYTALRLSQLPWSDQHPPQITLIDKSDHFLFSPLLYELVTSELQSWE 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP F++LLANT V F V + ++H + L++ + YD LV++
Sbjct: 65 IAPPFSELLANTPVNFQPGTVTAINVNNH-------------KITLDNKNDICYDRLVIA 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN-------------------- 238
LG + LD +PGA A PF +LEDA R+ +L LE+ +
Sbjct: 112 LGGQSSLDFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDKIRVAIIGGGYSGVELAC 171
Query: 239 --FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296
+RL E+G ++ I + I T NR+ A K L R V L + E
Sbjct: 172 KLADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL-------------DLE 218
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
+V AD +D+ L+ + I + DL+LWTV P P
Sbjct: 219 TTV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIASP- 255
Query: 357 NNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
+ +LP+ + R + ++ L +P I+A+GD++ RD +P ATAQVA QQ+D
Sbjct: 256 --LIANLPIAHSERKLLKVNQYLQTVENPSIYAIGDAADSRDQEDKPYAATAQVALQQSD 313
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L YL
Sbjct: 314 YCAWNIWASFHDKPALPFRYQPLGEMLTLGIDEATISGL---GLELAGPLAHLTRRLVYL 370
Query: 475 IRLPTDEHRLKVGVSWLTK 493
RLPT H++ V +W+T+
Sbjct: 371 YRLPTLNHQIAVAFNWITQ 389
>gi|427418370|ref|ZP_18908553.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
7375]
gi|425761083|gb|EKV01936.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
7375]
Length = 398
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 160/437 (36%), Positives = 232/437 (53%), Gaps = 78/437 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ ILGGGFGGLYTAL L L W KP++ LVDQ +RF+F P+LYEL++ E+ WEIA
Sbjct: 7 RVVILGGGFGGLYTALALSKLPWDKAIKPEITLVDQRDRFLFAPLLYELVTDELQTWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P +A+LLA TG++F + GV+G A + +V L+ ++ YD+LVL+LG
Sbjct: 67 PPYAELLAGTGIKFHQS-----------GVSGIDAVAN--SVCLQDDAVLPYDYLVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN---------------------- 238
E +D+ PG E+A F TL DA + +L ELE +
Sbjct: 114 GETPMDMAPGVKEYAIAFRTLSDAYALKERLRELEASDADQIRVAVVGGGYSGVELVCKL 173
Query: 239 FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
ERL E+G ++ + T I N++AA L+ + + + ++E +
Sbjct: 174 AERLGERGRLRIVERGTAILQNSPEFNQKAAQDALTDKGIWI-------------DYETT 220
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
V + I D S KY ++ + DLVLWTVG++ N
Sbjct: 221 VTE--------IGVDTISLKYKDQV---------DVLPVDLVLWTVGNQ--------VNP 255
Query: 359 RLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ LP N Q + TL + IFALGD + +D+ G +P TAQ A QQAD+
Sbjct: 256 LIASLPFDKNEHQQLKIQPTLQLLNQGHIFALGDLADGQDADGNKVPTTAQAALQQADYT 315
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
WN+WAA+ RP LPFR+Q+LGEMM LG + A ++ G+ LDG H R+L YL R
Sbjct: 316 AWNIWAALTGRPPLPFRYQHLGEMMTLGSDTATLTGL---GLKLDGTAAHIVRRLTYLYR 372
Query: 477 LPTDEHRLKVGVSWLTK 493
+PT EH+L+VG++W+++
Sbjct: 373 MPTFEHQLRVGLNWISQ 389
>gi|440756971|ref|ZP_20936171.1| putative NADH dehydrogenase [Microcystis aeruginosa TAIHU98]
gi|440173000|gb|ELP52484.1| putative NADH dehydrogenase [Microcystis aeruginosa TAIHU98]
Length = 397
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 158/438 (36%), Positives = 235/438 (53%), Gaps = 78/438 (17%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+S+ F+F P+LYEL++ E+ +WEI
Sbjct: 6 PKICILGGGFGGLYTALRLSQLPWSDQHPPQITLIDKSDHFLFSPLLYELVTSELQSWEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F++LLANT V F + V + ++H + L++ + YD LV++L
Sbjct: 66 APPFSELLANTPVDFQQGTVTAIDVNNH-------------KITLDNKNDICYDRLVIAL 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN--------------------- 238
G + L+ +PGA A PF +LEDA R+ +L LE+ +
Sbjct: 113 GGQSSLEFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDKIRVAIIGGGYSGVELACK 172
Query: 239 -FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
+RL E+G ++ I + I T NR+ A K L R V L + E
Sbjct: 173 LADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL-------------DLET 219
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
+V AD +D+ L+ + I + DL+LWTV P P
Sbjct: 220 TV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIASP-- 255
Query: 358 NRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ +LP+ + R + ++ L +P I+A+GD++ RD +P ATAQVA QQ+D+
Sbjct: 256 -LIANLPIAHSERKLLKVNQYLQTVENPSIYAIGDAADSRDQEDKPYAATAQVALQQSDY 314
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L YL
Sbjct: 315 CAWNIWASFHDKPALPFRYQPLGEMLTLGIDEATISGL---GLELAGPLAHLTRRLVYLY 371
Query: 476 RLPTDEHRLKVGVSWLTK 493
RLPT H++ V +W+T+
Sbjct: 372 RLPTLNHQIAVAFNWITQ 389
>gi|425433764|ref|ZP_18814242.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9432]
gi|389675515|emb|CCH95345.1| putative NADH dehydrogenase, chloroplastic/mitochondrial
[Microcystis aeruginosa PCC 9432]
Length = 397
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 162/439 (36%), Positives = 235/439 (53%), Gaps = 78/439 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+S+ F+F P+LYEL++ E+ +WE
Sbjct: 5 NPKICILGGGFGGLYTALRLSQLPWSDQHPPQITLIDKSDHFLFSPLLYELVTSELQSWE 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP F++LLANT V F + V + ++H + L++ + YD LV++
Sbjct: 65 IAPPFSELLANTPVNFQQGTVTAIDVNNH-------------KITLDNKNDICYDRLVIA 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN-------------------- 238
LG + L+ +PGA A PF +LEDA R+ +L LE+ +
Sbjct: 112 LGGQSSLEFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDKIRVAIIGGGYSGVELAC 171
Query: 239 --FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296
+RL E+G ++ I + I T NR+ A K L R V L + E
Sbjct: 172 KLADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL-------------DLE 218
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
+V +I AD+ S Y KG +I DL+LWTV P P
Sbjct: 219 TTVA--------DIQADRLSLDY--------KGQIDKI-PVDLILWTVS-----PIASP- 255
Query: 357 NNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
L +LP+ N R + ++ L + I+A+GD++ RD +P ATAQVA QQ+D
Sbjct: 256 --LLANLPIAHNERKLLKVNQYLQTVENSSIYAIGDAADSRDQEDKPYAATAQVALQQSD 313
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L YL
Sbjct: 314 YCAWNIWASFHDKPALPFRYQPLGEMLTLGVDEATISGL---GLELAGPLAHLTRRLVYL 370
Query: 475 IRLPTDEHRLKVGVSWLTK 493
RLPT H++ V +W+T+
Sbjct: 371 YRLPTLNHQIAVAFNWITQ 389
>gi|443655689|ref|ZP_21131544.1| putative NADH dehydrogenase [Microcystis aeruginosa DIANCHI905]
gi|159029241|emb|CAO87601.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443333607|gb|ELS48161.1| putative NADH dehydrogenase [Microcystis aeruginosa DIANCHI905]
Length = 397
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 158/439 (35%), Positives = 235/439 (53%), Gaps = 78/439 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P+ICILGGGFGGLYTALRL L W D PQ+ L+D+S+ F+F P+LYEL++ E+ +WE
Sbjct: 5 NPKICILGGGFGGLYTALRLSQLPWPDQHPPQITLIDKSDHFLFSPLLYELVTSELQSWE 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP F++LLANT V F + V + ++H + L++ + YD LV++
Sbjct: 65 IAPPFSELLANTPVDFQQGTVTAIDVNNH-------------KITLDNKNDICYDRLVIA 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN-------------------- 238
LG + L+ +PGA A PF +LEDA R+ +L LE+ +
Sbjct: 112 LGGQSSLEFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDKIRVAIIGGGYSGVELAC 171
Query: 239 --FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296
+RL E+G ++ I + I T NR+ A K L R V L + E
Sbjct: 172 KLADRLGERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL-------------DLE 218
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
+V AD +D+ L+ + I + DL+LWTV P P
Sbjct: 219 TTV------------ADIQADRLSLDYKGQIDNI-----PVDLILWTVS-----PIASP- 255
Query: 357 NNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
+ +LP+ + R + ++ L +P I+A+GD++ RD +P ATAQVA QQ+D
Sbjct: 256 --LIANLPIAHSERKLLKVNQYLQTVENPSIYAIGDAADSRDQEDKPYAATAQVALQQSD 313
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+ WN+WA+ +D+P LPFR+Q LGEM+ LG ++A +S G+ L GP+ H R+L YL
Sbjct: 314 YCAWNIWASFHDKPALPFRYQPLGEMLTLGIDEATISGL---GLELAGPLAHLTRRLVYL 370
Query: 475 IRLPTDEHRLKVGVSWLTK 493
RLPT H++ V +W+T+
Sbjct: 371 YRLPTLNHQIAVAFNWITQ 389
>gi|255080304|ref|XP_002503732.1| predicted protein [Micromonas sp. RCC299]
gi|226518999|gb|ACO64990.1| predicted protein [Micromonas sp. RCC299]
Length = 554
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 181/479 (37%), Positives = 252/479 (52%), Gaps = 81/479 (16%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQD-DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
PR+ ILGGGFGGLYTAL+L++L W D K+P V LVD++ERFVFKPMLYEL++ + WE
Sbjct: 65 PRVVILGGGFGGLYTALKLDALTWPDASKRPVVTLVDRAERFVFKPMLYELVNETMSDWE 124
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLG-VNGPMACTHGGTVLLESGLIVEYDWLVL 197
+AP F DLL T V++ + V + D + +G + GGT+ L SG VEYDWLV+
Sbjct: 125 VAPAFEDLLKPTSVRYVRGDVAAVRTGDAVPFADGSTGSSGGGTIELASGETVEYDWLVV 184
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV----------------------DRKLS--- 232
++G PG+ +FA P STLEDA R+ RK++
Sbjct: 185 AVGTASADAKCPGSKDFAIPLSTLEDARRLAGAMRDVEAAFETDRAAGSGARSRKVAVVG 244
Query: 233 ------ELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 286
EL ERL K ++ I P PG R+AA + L A V
Sbjct: 245 GGLSGVELAGVVAERLAGKASIELFASGAGIMPESPPGQRDAARRRLDAAGVTT------ 298
Query: 287 RCIRRVGEFEASVKQPESGAIPNIAADKNSDK-----YILELQPAIKGLESQIFEADLVL 341
R G + +P SG + + S L A +S+ + D+V
Sbjct: 299 ----RAGTRAIKISEPSSGVPSGVPSGVPSSPDARLPSAASLTYAQGDFDSRTEDYDVVC 354
Query: 342 WTVGSKPLLPHVEP-PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS-- 398
W VG + P P P +R + + T+ TL V+GH R+FA+GD + + DS+
Sbjct: 355 WAVGQRVEAPESWPFPRDRRTN-------KIVTERTLRVRGHGRVFAVGDVARVWDSTSA 407
Query: 399 GRP----------------------LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 436
G P LPATAQVAFQQAD+A WN+W++++ RPLLPF++Q+
Sbjct: 408 GLPEGGDAPNTFQNAAAPPPDRFDVLPATAQVAFQQADYAAWNVWSSLSSRPLLPFKYQH 467
Query: 437 LGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSA 495
+G+MM+LG+ DAAV+ V TLDGP+ + R+ AYL R+PT+EHR K+ SWL + A
Sbjct: 468 IGDMMVLGKTDAAVALP-VGDATLDGPLAAALRRAAYLYRMPTNEHRAKLATSWLEQGA 525
>gi|443476165|ref|ZP_21066085.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pseudanabaena biceps PCC 7429]
gi|443018927|gb|ELS33101.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pseudanabaena biceps PCC 7429]
Length = 398
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 159/441 (36%), Positives = 235/441 (53%), Gaps = 78/441 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTAL L L W P+++LVD+S+RF+F P LYEL++ E+ WEIA
Sbjct: 3 RICILGGGFGGLYTALNLSRLPWA--VMPEIILVDKSDRFLFTPFLYELVTKEMQEWEIA 60
Query: 141 PRFADLLANTGVQFFKDRV-KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P FA+LL+NTG+QF + V + S + VN + ++++YD L+L++
Sbjct: 61 PTFAELLSNTGIQFVQGLVTNIDLESKQVEVN------------VGQPIVLDYDRLLLAI 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE------------------- 240
G E +++V GA E+A PF L+D R++ KL LE N E
Sbjct: 109 GGETPMNLVDGAQEYAIPFRNLKDFYRLNSKLELLEASNREKIRVCIAGGGSSGVELACK 168
Query: 241 ---RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
RL+++G V+ ++ + I T R+ A LS R V L V +VG+ E
Sbjct: 169 IADRLKDRGRVRLVDRNSQILSNSTQSTRQIAELALSQRGVWTDLNTRV---SQVGDEEV 225
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
++ S D+VLWTVGS +
Sbjct: 226 TLDYTNG---------------------------SDTLPVDIVLWTVGST--------FS 250
Query: 358 NRLHDLPL-NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
L DLP+ + +G T+ TL VKG+P +FA+GD ++ D+ +PATAQVAFQQ+ +
Sbjct: 251 KMLRDLPVEHKQGAIATEATLQVKGYPYVFAIGDLASCVDAQDHLVPATAQVAFQQSQYC 310
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
WN+WA++N + L+PF + LGE + LG + A + S + ++DG + R+ AYL+R
Sbjct: 311 AWNIWASLNQKSLIPFSYIPLGEFISLGIDGA--TASILGKFSIDGLPAQAMRRFAYLLR 368
Query: 477 LPTDEHRLKVGVSWLTKSAID 497
+PT EH+ K+G WLTK I+
Sbjct: 369 MPTFEHQWKIGTHWLTKPLIE 389
>gi|428771870|ref|YP_007163658.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanobacterium stanieri PCC 7202]
gi|428686149|gb|AFZ46009.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanobacterium stanieri PCC 7202]
Length = 393
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 164/425 (38%), Positives = 229/425 (53%), Gaps = 81/425 (19%)
Query: 93 YTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGV 152
YTALRL+ L W + P++ L+D+ +RF+F P+LYEL++ E+ +WE+AP + +LL ++ +
Sbjct: 16 YTALRLQELDWGVNF-PEITLIDKGDRFLFSPLLYELITEEMQSWEVAPYYTELLEDSKI 74
Query: 153 QFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAA 212
F +D V GVN TV L+S +EYD LV++LG V GA
Sbjct: 75 NFIQDTVT--------GVN-----LEQKTVSLQSHDTLEYDRLVIALGGITPSQTVTGAK 121
Query: 213 EFAFPFSTLEDACRVDRKLSELERRNFE----------------------RLEEKGIVQA 250
E+A PF TL DA RV KL +LE E RL+E+G ++
Sbjct: 122 EYAIPFRTLNDAYRVKEKLRQLENSEQEKIRVAIVGGGYSGVELGVKIADRLKERGKIRI 181
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
I+ + I NR+ A K LS RK+ L + E + E I
Sbjct: 182 IDRGSQILKQSPEFNRKTAEKALSDRKIWL-------------DLETEITAIEENQI--- 225
Query: 311 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD---LPLNA 367
S +Y K L I DLVLWTVG+KP+ +L D LP N
Sbjct: 226 -----SLQY--------KNLVDTI-PVDLVLWTVGTKPV---------KLLDGLSLPQNE 262
Query: 368 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 427
G+ + L VK +P IFALGD D++G LP+TAQVAFQQ+D+ WN+WA++ D+
Sbjct: 263 NGKITINHELQVKDYPEIFALGDLVESLDNNGNILPSTAQVAFQQSDYCAWNIWASLKDK 322
Query: 428 PLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVG 487
PLLPFR+Q LGEM+ LG ++A +S GV+LDG + + AR+ YL RLPT +H+LKVG
Sbjct: 323 PLLPFRYQPLGEMISLGVDNATLSGL---GVSLDGGLAYLARRFVYLYRLPTPKHQLKVG 379
Query: 488 VSWLT 492
+SWL+
Sbjct: 380 LSWLS 384
>gi|16330375|ref|NP_441103.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|383322116|ref|YP_005382969.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325285|ref|YP_005386138.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491169|ref|YP_005408845.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436436|ref|YP_005651160.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|451814533|ref|YP_007450985.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|1652865|dbj|BAA17783.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|339273468|dbj|BAK49955.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|359271435|dbj|BAL28954.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274605|dbj|BAL32123.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277775|dbj|BAL35292.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958295|dbj|BAM51535.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|451780502|gb|AGF51471.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
Length = 404
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 165/439 (37%), Positives = 230/439 (52%), Gaps = 74/439 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRICILGGGFGGLYTALRL L W+ P+++LVDQ +RF+F P LYEL++ E+ WE
Sbjct: 5 RPRICILGGGFGGLYTALRLGQLSWEGHTPPEIVLVDQRDRFLFAPFLYELVTEEMQTWE 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IAP F +LLA +GV F + V + DH V + GT ES + +D LV++
Sbjct: 65 IAPPFVELLAESGVIFRQAEVTAI-DFDHQKV--LLNDQDKGT---ES---LAFDQLVIA 115
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE------------------ 240
LG + L +PG ++ F TLEDA ++ +KL LE+ + E
Sbjct: 116 LGGQTPLPNLPGLKDYGLGFRTLEDAYKLKQKLKSLEQADAEKIRIAIVGGGYSGVELAA 175
Query: 241 ----RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296
RL E+G ++ I I NR+ A LSA+ + + V I
Sbjct: 176 KLGDRLGERGRIRIIERGKEILAMSPEFNRQQAQASLSAKGIWVDTETTVTAI------- 228
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS--KPLLPHVE 354
+ L+ + + + DLVLWTVG+ PL+ ++
Sbjct: 229 ------------------TATDVTLQFRE-----QEDVIPVDLVLWTVGTTVSPLIRNLA 265
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
LP N +GQ T+ L V+G IFALGD + RD+SG+ +P TAQ AFQQ D
Sbjct: 266 --------LPHNDQGQLRTNAQLQVEGKTNIFALGDGAEGRDASGQLIPTTAQGAFQQTD 317
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+ WN+WA + RPLLP R+Q LGEM+ LG + A +S G+ L GP AR+L YL
Sbjct: 318 YCAWNIWANLTGRPLLPCRYQPLGEMLALGTDGAVLSGL---GIKLSGPAALLARRLVYL 374
Query: 475 IRLPTDEHRLKVGVSWLTK 493
R PT +H+L VG++WLT+
Sbjct: 375 YRFPTWQHQLTVGLNWLTR 393
>gi|428771369|ref|YP_007163159.1| NADH dehydrogenase [Cyanobacterium aponinum PCC 10605]
gi|428685648|gb|AFZ55115.1| NADH dehydrogenase [Cyanobacterium aponinum PCC 10605]
Length = 398
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 153/439 (34%), Positives = 234/439 (53%), Gaps = 79/439 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K +I ILGGGFGGLYTA++L WQ+ P+++L+D+++RF+F P+LYEL++ E+ +W
Sbjct: 3 KVNKIVILGGGFGGLYTAIKLAQFPWQE-SNPEIVLIDKNDRFLFSPLLYELITDEMQSW 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
E+AP + +LL+NT ++F +D V + + + L++ + YD+LV+
Sbjct: 62 EVAPSYYELLSNTSIRFLQDTVTEIDDT-------------ARQISLKNNGDLSYDYLVM 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE----------------- 240
+LG + ++ V GA++FA PF TLEDA RV KL LE + E
Sbjct: 109 ALGGKTPVNQVSGASDFAIPFRTLEDAYRVKEKLRVLENSDLEAIRVVVVGGGYSGVELA 168
Query: 241 -----RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 295
RL ++G ++ ++ + I NR+ A K L R + L
Sbjct: 169 LKVADRLGKRGKIRIVDRGSEILSDSPEFNRKTAEKALRDRTIWTDL------------- 215
Query: 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPLLPHV 353
+ NI S Y ++QI DLVLWTVG+KP++
Sbjct: 216 --------ETEVTNITEKDISLSY-----------KNQIDTIPVDLVLWTVGTKPVMLEK 256
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
+ P NA+G+ E + L VK + ++ALGD D G+ LPATAQVAFQQA
Sbjct: 257 KFP------FATNAQGKIEINSYLQVKDNSVVWALGDLVECYDQQGKKLPATAQVAFQQA 310
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
D+ WN+WA I ++PLL F++Q LGEM+ LG++ A +S + +G+ AR+L Y
Sbjct: 311 DYCAWNIWATIENKPLLAFKYQPLGEMLALGKDSATISGLGLSLGGG---LGYLARRLIY 367
Query: 474 LIRLPTDEHRLKVGVSWLT 492
L RLPT EH++ V ++W+T
Sbjct: 368 LYRLPTFEHQMAVAMNWIT 386
>gi|428220958|ref|YP_007105128.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
7502]
gi|427994298|gb|AFY72993.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
7502]
Length = 401
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 164/439 (37%), Positives = 244/439 (55%), Gaps = 68/439 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTAL+L L W +P+++L+D+++RFVF P+LYEL++GE++ WEIA
Sbjct: 3 RICILGGGFGGLYTALQLNQLPW--TVQPEIILIDRNDRFVFSPLLYELITGELETWEIA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F++LL+ +GV+F + V +D N ++ T+ ++L + +YD LVL+LG
Sbjct: 61 PTFSELLSGSGVRFVQGNV-----TDIDIANCQVSLTN--SLLPTEVISFKYDRLVLALG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDA--------------------CRVDRKLS--ELERRN 238
E +D+V GA E+A PF TL DA C S EL +
Sbjct: 114 GETPVDLVSGALEYAIPFRTLADAQRLQLRLLQLEQSKPEKIRVCIAGAGSSGVELACKI 173
Query: 239 FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
+RL+ G V+ ++ T+I NR AA + L++R + L + +G+ E
Sbjct: 174 SDRLQGIGRVRIVDRNTSILANSPISNRIAAERALASRGIWTDL---CTNVAHIGDGE-- 228
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
+ N A+ ++ D+VLWTVG+ L + N
Sbjct: 229 -------ILLNYASGSDT------------------LPVDIVLWTVGNS--LSKLARSLN 261
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
H + RGQ + TL V+GH +IFALGD + RD +G+ LPATAQVAFQQA +
Sbjct: 262 LPHS---SGRGQIIIEPTLQVQGHEQIFALGDIAECRDPAGQILPATAQVAFQQAQYCAR 318
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
N+WA++N L+PF + LGE M LG+++AA+S GV +G AR+LAYL+R+P
Sbjct: 319 NVWASLNQHALIPFTYLALGEFMSLGKDNAAMSIFGQFGV--EGVPALIARRLAYLLRMP 376
Query: 479 TDEHRLKVGVSWLTKSAID 497
T +H++KVG +WL++ D
Sbjct: 377 TFQHQVKVGFNWLSRPLFD 395
>gi|145346170|ref|XP_001417566.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577793|gb|ABO95859.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 493
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 169/431 (39%), Positives = 235/431 (54%), Gaps = 58/431 (13%)
Query: 91 GLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANT 150
GLYTALRL+SL W + +P++ +VD++E FVFKP+LYEL++ ++ WE+AP F +LL T
Sbjct: 65 GLYTALRLDSLEWAGETRPEITVVDRAEAFVFKPLLYELVNETLEPWEVAPTFEELLKPT 124
Query: 151 GVQFFKDRVKLLCPSDHLGV-NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209
V K V P D + +G GG++ L G + YD+LVL+LG V
Sbjct: 125 KVTHVKGEVVSFEPEDRGTMRDGTPYSATGGSITLGDGTTLAYDYLVLALGTSTSDGGVA 184
Query: 210 GAAEFAFPFSTLEDACRVDRKLSELERRN---------------------FERLEEK--- 245
GA E A +T EDA R+ L ELER ERL K
Sbjct: 185 GARECAVALNTAEDAVRIAGVLGELERAGRDARVAVIGGGLSGVELASVIAERLNGKSTN 244
Query: 246 GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 305
G+V I + T PG REAAL+VL +V +V G +R + +V E +V
Sbjct: 245 GVVDVITPNKRVMATAPPGQREAALRVLEKARVNVVGGRVMR-LDKVANDEETV------ 297
Query: 306 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
+ K L +G+E+ DLV WTVG + P P +
Sbjct: 298 --------STASKITLADDDGAEGVETY----DLVCWTVGQRAETPSDWP-------VAT 338
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSA----LRDSSGRPLPATAQVAFQQADFAGWNLW 421
+ +TD TL V GH RI+A+GD+S+ + ++ LP+TAQVAFQQAD+A WN+W
Sbjct: 339 TPARKIKTDATLRVNGHSRIYAVGDASSSSAEVMNADWDHLPSTAQVAFQQADYAAWNIW 398
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAAVS-PSFVEGVTLDGPIGHSARKLAYLIRLPTD 480
A++N R LPFR+Q+LG+MM+LG DAAV+ P V +TL+GP + R+LAYL R+PT+
Sbjct: 399 ASMNGRTELPFRYQHLGDMMVLGSLDAAVAFP--VGDITLEGPAAAALRRLAYLYRMPTN 456
Query: 481 EHRLKVGVSWL 491
EHRLK+G W+
Sbjct: 457 EHRLKLGSKWI 467
>gi|15912293|gb|AAL08280.1| NADH dehydrogenase-like protein [Arabidopsis thaliana]
gi|22135783|gb|AAM91048.1| At5g08740/At5g08740 [Arabidopsis thaliana]
Length = 257
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/239 (56%), Positives = 159/239 (66%), Gaps = 45/239 (18%)
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF--------------- 239
LVL+LGAE KLDVVPGA E AFPF TLEDA RV+ KLS+LER+NF
Sbjct: 26 LVLALGAESKLDVVPGAMELAFPFYTLEDAIRVNEKLSKLERKNFKDGSAIKVAVVGCGY 85
Query: 240 ----------ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 289
ERL+++GIVQ+INV I + GNREAA+KVL++RKVQL+LGY V+ I
Sbjct: 86 AGVELAATISERLQDRGIVQSINVSKNILTSAPDGNREAAMKVLTSRKVQLLLGYLVQSI 145
Query: 290 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 349
+R E + Y LELQPA +GLESQI EAD+VLWTVG+KPL
Sbjct: 146 KRASNLE------------------EDEGYFLELQPAERGLESQIIEADIVLWTVGAKPL 187
Query: 350 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 408
L +EP + LPLNARGQAETDETL VKGHPRIFALGDSS+LRDS+G+ LP TAQV
Sbjct: 188 LTKLEPSGPNV--LPLNARGQAETDETLRVKGHPRIFALGDSSSLRDSNGKILPTTAQV 244
>gi|37523072|ref|NP_926449.1| NADH dehydrogenase [Gloeobacter violaceus PCC 7421]
gi|35214075|dbj|BAC91444.1| glr3503 [Gloeobacter violaceus PCC 7421]
Length = 406
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 157/417 (37%), Positives = 235/417 (56%), Gaps = 32/417 (7%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGGF GL+TAL LE+ ++D++ P++LL+D+SERFVF P+LYEL+SGE+ WE+A
Sbjct: 13 RIVIVGGGFAGLFTALGLEAYPFKDER-PEILLIDRSERFVFSPLLYELVSGELATWEVA 71
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF +LL T V+F + ++ +G + V L G YD L L++G
Sbjct: 72 PRFDELLEGTRVRFVQ--------AEAMGFD-----FENRIVKLAGGGAESYDRLALTVG 118
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGI-VQAINVETTICP 259
+D+VPGA E A PF TLEDA + +L + + + A VE
Sbjct: 119 GSTPVDIVPGAREHALPFRTLEDAQALIARLKAALDAGADPVRAALVGAGASGVELACKL 178
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 319
T G++ + VL R +L F R++ E ++ G I + ++
Sbjct: 179 ADTLGDKGSI--VLFDRAAD-ILAEFDAPERKMARAELEKRRVRLGLSTKILSVSDAG-- 233
Query: 320 ILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCV 379
L+++ A +G+E+ A++VLWTVG+ P + DLP G+ + TL V
Sbjct: 234 -LQVETAGRGVEA--IPAEVVLWTVGT------AVPGLIKDLDLPKGPGGRLAVEPTLQV 284
Query: 380 KGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGE 439
+GHP IFALGD +A D+ G+PL +AQ+AFQQA + WNLWA+++DRPLL FR+ LG+
Sbjct: 285 QGHPEIFALGDLAASLDAGGKPLGPSAQLAFQQAGYCAWNLWASLSDRPLLAFRYNALGK 344
Query: 440 MMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 496
++ LG + S + G + GP + R+LAYL R+PTD HRLKV + W ++ +
Sbjct: 345 LLGLGIDSGVAS---LLGTAVGGPPAYLIRRLAYLYRMPTDAHRLKVALHWASRPVV 398
>gi|357520139|ref|XP_003630358.1| hypothetical protein MTR_8g094720 [Medicago truncatula]
gi|355524380|gb|AET04834.1| hypothetical protein MTR_8g094720 [Medicago truncatula]
Length = 206
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/203 (64%), Positives = 148/203 (72%), Gaps = 6/203 (2%)
Query: 1 MASIALSASAALLPLKRNSGAWSKLFPFSSKSY-----LSFKTCRKNRFISFAASNSSGR 55
M+ IALSAS +L+ R + WS LFP + +S L + RK + F AS +G
Sbjct: 1 MSHIALSASPSLVAFHRGAKQWSTLFPSNWRSSGTNPSLFANSNRKRLQLRFFASGKNGG 60
Query: 56 NGDLV-VTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLV 114
NG +V SE A + WPD KKPR+CILGGGFGGLYTALRLESL W +D KPQ+ LV
Sbjct: 61 NGGVVDEISETVKAHANFVWPDNKKPRVCILGGGFGGLYTALRLESLEWSEDNKPQIALV 120
Query: 115 DQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPM 174
DQS+RFVFKPMLYELLSGEVD WEIAPRF+DLLANTGVQF KDRVK+L PSDHLGVNG
Sbjct: 121 DQSDRFVFKPMLYELLSGEVDEWEIAPRFSDLLANTGVQFLKDRVKVLQPSDHLGVNGSN 180
Query: 175 ACTHGGTVLLESGLIVEYDWLVL 197
A THGGTV LESGL +EYDW L
Sbjct: 181 ASTHGGTVHLESGLHIEYDWYKL 203
>gi|170078719|ref|YP_001735357.1| type II NADH dehydrogenase B [Synechococcus sp. PCC 7002]
gi|22652018|gb|AAN03563.1|AF381044_1 type II NADH dehydrogenase B [Synechococcus sp. PCC 7002]
gi|169886388|gb|ACB00102.1| type II NADH dehydrogenase B [Synechococcus sp. PCC 7002]
Length = 390
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 157/437 (35%), Positives = 219/437 (50%), Gaps = 79/437 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+P I I+GGGF GLYTALRL W+ ++P + L+D+ FVF P+LYEL++ E+ WE
Sbjct: 3 QPHIVIIGGGFAGLYTALRLLQFPWETSQRPDITLIDRQNHFVFSPLLYELITEEMQPWE 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+AP + +LL + V+F + +V+ + P V G T YD+LV++
Sbjct: 63 VAPTYTELLRHGPVKFVQTQVQTVDPEQKNVVCGDRQIT--------------YDYLVIA 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE------------------ 240
G K +PG E+A PF TL DA + KL LE E
Sbjct: 109 AGGTTKFVNLPGIKEYALPFKTLNDALHLKEKLRALETSVAEKIRIAIVGGGYSGVELAC 168
Query: 241 ----RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296
RL ++G ++ I+ I N+ AA + L AR G +V V E
Sbjct: 169 KLADRLGDRGRLRIIDRGDEILKNAPKFNQLAAKEALEAR------GIWVDYATEVTE-- 220
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
+ AD S +Y KG E ADLVLWT G + P V+
Sbjct: 221 -------------VTADSLSLRY--------KG-EVDTIPADLVLWT-GGTAIAPWVKD- 256
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
LP G+ + + L ++ HP IFALGD + D+ LP TAQVA QQAD
Sbjct: 257 ----LALPHAGNGKLDVNAQLQIQNHPNIFALGDVAQAEDN----LPMTAQVAIQQADVC 308
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
WNL I ++PLLPF+F NLGEM+ LG N+A +S G+ L+G + H AR+L YL R
Sbjct: 309 AWNLRGLITNKPLLPFKFFNLGEMLTLGENNATLSGL---GLELEGNLAHVARRLVYLYR 365
Query: 477 LPTDEHRLKVGVSWLTK 493
LPT EH+++VG++WL +
Sbjct: 366 LPTWEHQVQVGLNWLVQ 382
>gi|56751607|ref|YP_172308.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 6301]
gi|81301317|ref|YP_401525.1| type 2 NADH dehydrogenase NdbB [Synechococcus elongatus PCC 7942]
gi|15620546|gb|AAL03930.1|U30252_18 DhnA [Synechococcus elongatus PCC 7942]
gi|56686566|dbj|BAD79788.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 6301]
gi|81170198|gb|ABB58538.1| type 2 NADH dehydrogenase NdbB [Synechococcus elongatus PCC 7942]
Length = 398
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 163/435 (37%), Positives = 232/435 (53%), Gaps = 75/435 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
ICILGGGFGGLYTAL L WQ +P + L+D+ +RFVF P+LYEL++GE+ WE+AP
Sbjct: 8 ICILGGGFGGLYTALALAQQSWQGASRPPIHLIDRGDRFVFLPLLYELITGELQGWEVAP 67
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
R+ DLLANT VQF + V + L V+LESG + E+ LVL+LG
Sbjct: 68 RYRDLLANTPVQFHRGVVSEVDLQQQL-------------VVLESGQVFEFGQLVLALGG 114
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER----------------------RNF 239
E D+ PGA A PF +L+DA ++ +LSELE +
Sbjct: 115 ETPRDLAPGAETHALPFRSLDDAIALNTRLSELEHQPDRQIRIAIVGAGPSGVELACKLA 174
Query: 240 ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
+RL ++ ++ I + I NREAA + L R++ L L V +
Sbjct: 175 DRLGDRAWIRLIELGEDILRNSPEFNREAAERALQQRQILLDLKTGVAAV---------- 224
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQ-IFEADLVLWTVGSKPLLPHVEPPNN 358
+D +L+ +G +++ + DLVLWTVG++ P
Sbjct: 225 ---------------EADAIVLQ-----RGEQTERLSNIDLVLWTVGNRV------PAAV 258
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
DLP NARGQ +T TL + GH +FALGD + L G+ +PATAQ AFQQA+
Sbjct: 259 AALDLPKNARGQLQTALTLQISGHNNLFALGDLAELPLVDGKAIPATAQAAFQQANCLAA 318
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
NL A ++PL F++Q LGEM+ LG +A ++ G+TL+GP+ AR+LAYL R+P
Sbjct: 319 NLIAQRREQPLSDFQYQALGEMLALGSGNATLTGL---GLTLEGPLAAVARRLAYLYRMP 375
Query: 479 TDEHRLKVGVSWLTK 493
T + +VG++WL +
Sbjct: 376 TPTQQCRVGLNWLLQ 390
>gi|449017630|dbj|BAM81032.1| NADH dehydrogenase type II, chloroplast precursor [Cyanidioschyzon
merolae strain 10D]
Length = 607
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 166/547 (30%), Positives = 257/547 (46%), Gaps = 104/547 (19%)
Query: 21 AWSKLFPFSSKSYLSFKTCRKNRFISFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKP 80
AW LF + + + + R A S S R + + ED+ S++ +P
Sbjct: 30 AWPHLFSGAQRVERGRRATSQGRR---ARSLLSTRTFCMSSSQEDQPKSKSMA---SLRP 83
Query: 81 RICILGGGFGGLYTALRLESLVWQDD---------------------------------- 106
++C+LGGGFGGLYTALRL L W D
Sbjct: 84 KVCVLGGGFGGLYTALRLCQLPWGRDLRRYEAAARTPQRESTFSVDNSERRRASDTSKQS 143
Query: 107 ----------KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156
+P++ L+D ERFVF P+LYEL++GE+ WE+AP FA+LL +T V F +
Sbjct: 144 ASQRLVAGQRTRPELTLIDTRERFVFLPLLYELVTGEMGIWEVAPPFAELLEDTDVDFLQ 203
Query: 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAF 216
+V+ + PM ++ ES I+ YD LV++LG+E D+VPGA E A
Sbjct: 204 AQVQHIDLDKRRVTVRPMMPSNASES-KESDEIISYDRLVIALGSEDTRDMVPGAREHAL 262
Query: 217 PFSTLEDACRVDRKLSELERRN----------------------FERLEEKGIVQAINVE 254
F ++EDA R+ ++ LE + +RL + +Q ++
Sbjct: 263 GFRSVEDAIRIRERVRLLESSSQPTIRIVIVGGGYSGVELACNLSDRLGPRAQIQIVDRG 322
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 314
+ T NR A + L R + V E SV ++ A+K
Sbjct: 323 RELMAASTAYNRSQATRALRLRNISFVP-------------ETSVVSVGPNSLRLSYAEK 369
Query: 315 NSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD 374
+ D+ A E+ + + DLVLWT G++ + + + N RGQ TD
Sbjct: 370 SGDR-------APPASETTLEQIDLVLWTAGNR-INKVIREGLIASRQVERNERGQLLTD 421
Query: 375 ETLCVKGHPRIFALGDSSALRD--------SSGRPLPATAQVAFQQADFAGWNLWAAIND 426
L + +P + LGD++ +R+ + +P TAQ+A Q+ADFA WN WA++
Sbjct: 422 RFLRLPNYPEVIVLGDAAQIREPVAAVPVVTREQPRGMTAQIALQEADFAAWNTWASLTG 481
Query: 427 RPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 486
R LPF++ +LGEM+ LGR+D +V + + L GP+ H R+LAY+ R+PTD HRL+V
Sbjct: 482 REPLPFQYVHLGEMITLGRDDGSV--QLLGLLNLSGPLAHQLRRLAYIARMPTDAHRLRV 539
Query: 487 GVSWLTK 493
G S++ +
Sbjct: 540 GASYVAQ 546
>gi|452823598|gb|EME30607.1| NADH dehydrogenase [Galdieria sulphuraria]
Length = 474
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 161/441 (36%), Positives = 228/441 (51%), Gaps = 72/441 (16%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILGGGFGGLYTAL L W KP++ LVD+S+RFVF PMLYE+ G++D W++
Sbjct: 66 PKITILGGGFGGLYTALTLSRYPWTRLTKPKITLVDRSDRFVFLPMLYEVAFGQLDKWQV 125
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP F+ LL T V+F +V+ + D + T G +D LV+++
Sbjct: 126 APTFSQLLQGTDVEFVLGQVEKV---DVQKSTCEIFSTKYGQKEF------YHDRLVIAI 176
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE--RRNFERL--------EEKGIVQ 249
G EP L VPGA ++A PF TLE A ++ +KL L RR R G+
Sbjct: 177 GTEPSLSSVPGADKYALPFRTLEHAEQLKQKLVNLTKMRRQQNRKPVIFVIGGSYSGVEL 236
Query: 250 AINV------ETTIC---------PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
A NV E +C + NR AL+ L + V+ +L V C V E
Sbjct: 237 ASNVAEYFRGEARVCIVDRGNRLLDAASEHNRNVALQTLRSLNVESLLDMEVSC---VTE 293
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
S+K +Q + + E + F+ADLVLWT G K
Sbjct: 294 NAVSLK---------------------SIQESTQESEKK-FDADLVLWTAGFK------- 324
Query: 355 PPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
P++ L + L + G+ T TL H IF LGD++A+ D +G+ ATAQVA QQ
Sbjct: 325 -PSSWLQFVALEKDPTGRILTSSTLQATRHDNIFVLGDAAAVTDVNGQRCKATAQVAIQQ 383
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
A+ A WN+WA++ ++ +PFR+++LGE+M LG+ + V G+ L G R+LA
Sbjct: 384 AECAAWNIWASLCNKKPVPFRYEHLGELMTLGKYNGTAE---VFGIPLSGTSAQFTRRLA 440
Query: 473 YLIRLPTDEHRLKVGVSWLTK 493
YL R+PT+ HRLKVG +W+ K
Sbjct: 441 YLFRMPTNLHRLKVGQNWVFK 461
>gi|254409363|ref|ZP_05023144.1| Pyridine nucleotide-disulphide oxidoreductase, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183360|gb|EDX78343.1| Pyridine nucleotide-disulphide oxidoreductase, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 420
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 157/451 (34%), Positives = 236/451 (52%), Gaps = 92/451 (20%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
ICILGGGFGGLYTAL L+ K ++ L+D+ + VF P+LYE ++ E+ AWEIAP
Sbjct: 9 ICILGGGFGGLYTALYLQRFRLFKSPKYKITLIDRKDHLVFTPLLYERVTQELQAWEIAP 68
Query: 142 RFADLLANTGVQFF----------KDRVKL-LCPSDHLGVNGPMACTHGGTVLLESGLIV 190
R+ L+ NT + F K +VKL L LG N I+
Sbjct: 69 RYRTLIENTTIDFCQGNIQAVDLEKRQVKLQLDTLSELGQNLK---------------IL 113
Query: 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF----------- 239
Y++LVL++GAE +LD VPGAA +A+PF T+ DA R++++L++LE+ N
Sbjct: 114 NYNYLVLAVGAEMRLDGVPGAATYAYPFRTVTDAERLNQQLNQLEQSNLPQIRVAVIGAG 173
Query: 240 -----------ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 288
+RL+E+G ++ I + T TP ++++A + L+AR+VQ+
Sbjct: 174 PSGVELACKLSDRLQERGQIRLIERGQQLLKTFTPYSQKSAYRALTARRVQM-------- 225
Query: 289 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 348
+F SV+ ES I I + + + DLVLWTVG++
Sbjct: 226 -----DFVTSVEAIESDQITLINQNGKT-----------------LMPVDLVLWTVGTRS 263
Query: 349 LLPHVEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA 406
+ + LP N +G+ T TL V +P + ALGD + ++D G+ LP TA
Sbjct: 264 I--------EWVRHLPCQQNPQGKILTHPTLQVADYPEVLALGDMADIQDYPGQ-LPKTA 314
Query: 407 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 466
QVA+QQAD A NL+ A+ + L PFR+ +LGEM+ LG+ +A VS SF + + G +
Sbjct: 315 QVAYQQADCAAKNLYRAVRRKRLKPFRYLHLGEMLTLGKGEAVVS-SF--AMKISGRLAG 371
Query: 467 SARKLAYLIRLPTDEHRLKVGVSWLTKSAID 497
R+ YL RLPT HR +V W+ + ++
Sbjct: 372 MIRQFVYLQRLPTLRHRWRVLQHWVGQWLVN 402
>gi|149980664|gb|ABR53723.1| putative type II NADH dehydrogenase [Chlamydomonas reinhardtii]
Length = 602
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 187/542 (34%), Positives = 250/542 (46%), Gaps = 102/542 (18%)
Query: 43 RFISFAASNSSGRNGDLVVTSE--DESASQTYTWPDKKKPRICILGGGFGGLYTALRLES 100
R + F A+ S +G V ++ A T PR+ +LGGGFGGLY A+RLE
Sbjct: 54 RLMGFRAAGSQAPHGARAVATQATGSPAFGPGTSSGHHSPRVVVLGGGFGGLYAAVRLEQ 113
Query: 101 LVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVK 160
L+W KPQ+ LVDQ++RFVFKP+LYEL++G A E++P F LLA ++F + +V
Sbjct: 114 LMWPRGNKPQITLVDQADRFVFKPLLYELINGAATADEVSPSFEQLLAPYPIRFVQAQVA 173
Query: 161 LLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFS 219
+ P+ V L G + YD+LV++LG +P VPG E+A PF+
Sbjct: 174 SVSPAAPHADAPDPDAPDAAGAVTLSDGTQLPYDFLVVALGGQPDSRGVPGVKEWAVPFA 233
Query: 220 TLEDACRVDRKLS---------------------ELERRNFERLEEKGIVQAINVETTI- 257
EDA RV L EL ERL +G A+ V+
Sbjct: 234 GYEDALRVKGTLDLLSDAGAGGCVVVVGAGYAGVELAATVAERLRARGAGGAVAVKVLTP 293
Query: 258 -------CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR-VGEFEASVKQPESG---- 305
CP G REAA K L+ V+++ G V + + +A + P +G
Sbjct: 294 GSHILEGCPEG---QREAASKALADLGVEVLTGARVLGLDPPLAASDAGEQSPAAGTSAA 350
Query: 306 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
A+P A + S + A G ADLV+WT G+ P P+
Sbjct: 351 ALPT--ACRVSYSLASDAGSAAGGAARSHLGADLVVWTAGTSPATREAR----AGFPFPV 404
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP-----LPATAQVAFQQADFAGWNL 420
NARG ET+ TL V G +FALGD + S P LPATAQVAFQQAD+A WN+
Sbjct: 405 NARGALETEPTLRVSGSDNVFALGDVAVAAPSPADPHHTQALPATAQVAFQQADYAAWNV 464
Query: 421 WAAINDRPLLPFRFQNLGEMMILGR-NDAAVSPSFV------------------------ 455
WAAIN RPLLPF++Q+LG MM LG+ N A P V
Sbjct: 465 WAAINGRPLLPFKYQHLGSMMALGQTNAAVALPIPVPTALADAVRSSPLGPLLSAAGVRV 524
Query: 456 --------------------------EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVS 489
GVT++GP+ R+ AYL R PT+E RL V S
Sbjct: 525 GGAGPEAEAAVAGAAAAEGKSSAVGDSGVTVEGPLAQLMRRGAYLYRQPTNEQRLNVATS 584
Query: 490 WL 491
W+
Sbjct: 585 WV 586
>gi|302851785|ref|XP_002957415.1| hypothetical protein VOLCADRAFT_107672 [Volvox carteri f.
nagariensis]
gi|300257219|gb|EFJ41470.1| hypothetical protein VOLCADRAFT_107672 [Volvox carteri f.
nagariensis]
Length = 570
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 171/489 (34%), Positives = 232/489 (47%), Gaps = 104/489 (21%)
Query: 93 YTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGV 152
Y A RL+ L+W KKPQV LVDQS+RFVFKP+LYEL++G E+AP LLA V
Sbjct: 62 YAAFRLDQLMWPRGKKPQVTLVDQSDRFVFKPLLYELINGTATPEEVAPSLPQLLAPYPV 121
Query: 153 QFFKDRVKLLCPSDHLGVNGPMACTH--GGTVLLESGLIVEYDWLVLSLGAEPKLDVVPG 210
+F + +V + P++ G H G V L G + YD+L+++LG++P VPG
Sbjct: 122 RFVQAQVTGVHPAEA----GATEVVHDGAGYVALSDGTSLPYDYLLVALGSQPDSRGVPG 177
Query: 211 AAEFAFPFSTLEDACRVDRKLSELE-----------RRNFERLEEKGIV----------- 248
E+A PF+T EDA RV L L + +E +V
Sbjct: 178 VREWAVPFNTYEDAVRVKGTLDLLSDSGAGGSVVIVGGGYAGVELAAVVGERLRGRRGGG 237
Query: 249 QAINVETTICP-----TGTP-GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQP 302
A++V+ + P G+P G R AA K L VQ+V G V + + ASV
Sbjct: 238 GAVSVQ-LLTPGSDILEGSPEGQRAAANKALQDLGVQVVTGVRVEALGPPDDNGASVT-- 294
Query: 303 ESGAIP---NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
A+P ++ + + Q AD+V+WT GS P +
Sbjct: 295 ---ALPTACTVSYSPATATSAAAAVATAPEQQQQRLAADVVIWTAGSSPATREAR----Q 347
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGD---------------SSALRDSSGRPLPA 404
P NARG ET+ +L ++G +FALGD +S S+ LPA
Sbjct: 348 GFPFPTNARGAIETEPSLRIRGSDTMFALGDVAVAAAATDPPSSASASPSAQSTTEVLPA 407
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS-----PSFV---- 455
TAQVAFQQAD+A WN+WAAIN RPLLPFR+Q+LG MM LG+ +AAV+ PS +
Sbjct: 408 TAQVAFQQADYAAWNIWAAINGRPLLPFRYQHLGSMMSLGQINAAVALPLELPSPLADAV 467
Query: 456 -----------EGV----------------------TLDGPIGHSARKLAYLIRLPTDEH 482
GV TL+GP+ R+ AYL R PT+E
Sbjct: 468 RSSPLGPLLGAAGVRLGDGRGGVSASAAAASPGGGVTLEGPLAALLRRGAYLYRQPTNEQ 527
Query: 483 RLKVGVSWL 491
R+ V SWL
Sbjct: 528 RINVAASWL 536
>gi|427725118|ref|YP_007072395.1| NADH dehydrogenase [Leptolyngbya sp. PCC 7376]
gi|427356838|gb|AFY39561.1| NADH dehydrogenase [Leptolyngbya sp. PCC 7376]
Length = 394
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 152/444 (34%), Positives = 224/444 (50%), Gaps = 78/444 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ I I+GGGF GLYTALRL W+D P++ L+D+ + FVF P+LYEL++ E++ WE
Sbjct: 3 QKHIVIIGGGFAGLYTALRLVEFPWEDATCPEITLIDRQDHFVFSPLLYELITEEMEPWE 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+APR+ LL N+ +Q+ + +V + + TV+ + YD+LV++
Sbjct: 63 VAPRYTKLLENSSIQYRQTQVTSVDVA-------------ARTVICNEQEPISYDYLVIA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE------------------ 240
G K +PG E A PF +L+DA R+ KL LE E
Sbjct: 110 AGGTTKTLDIPGLKENAIPFKSLDDALRLKDKLRLLENSEAEKIRIAVVGGGYSGVELAC 169
Query: 241 ----RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296
RL ++G ++ I+ I N+ AA + L A+K+ + ++E
Sbjct: 170 KLADRLGDRGRLRLIDRGKEILDNAPKFNQTAAKEALEAKKIWV-------------DYE 216
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
V G P + LE + + + DLV+WTVG+ + P VE
Sbjct: 217 TKV----VGLTPETIS--------LEYKDQVDEIP-----VDLVMWTVGNA-IAPWVEA- 257
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
DLP G+ E E L V HP IFALGD + + LP TAQVA QQAD
Sbjct: 258 ----LDLPHAENGRLEISEKLQVNDHPNIFALGDVAQF----DQDLPMTAQVAIQQADVC 309
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
WNL + I ++PLL F F +LGEM+ LG ++A +S G+ LDG + H AR+L YL R
Sbjct: 310 AWNLRSLIEEKPLLSFNFYDLGEMLTLGEDNATLSGL---GIELDGNLAHIARRLVYLYR 366
Query: 477 LPTDEHRLKVGVSWLTKSAIDSVA 500
LPT +H+L VG++W+ + + +A
Sbjct: 367 LPTWQHQLNVGLNWMVQPVVKFLA 390
>gi|412988518|emb|CCO17854.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Bathycoccus prasinos]
Length = 513
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 168/466 (36%), Positives = 237/466 (50%), Gaps = 90/466 (19%)
Query: 93 YTALRLESLVWQ----DD----KKPQ--VLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
Y AL+L+SL DD KKP V L+D +E+F+FKP++YELL+ +++ ++AP
Sbjct: 58 YCALKLDSLFATNTRGDDSGEKKKPTMIVTLIDTNEKFLFKPLMYELLNSDMEETDVAPL 117
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGV-NGPMACTHGGTVLLESGLI-----VEYDWLV 196
+ +LL NT V+F + + P L +G GG V++ V+YD+LV
Sbjct: 118 YEELLENTTVRFLQKEAMRVEPEKVLKTKSGSKVSGTGGEVIVRDVETKEEERVKYDYLV 177
Query: 197 LSLGA----EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLE--------- 243
+SLGA E + + V GA EFA PF+ L+D R+ K+ L+ ER E
Sbjct: 178 VSLGAKVDFESEKNFVKGAREFAMPFNGLDDVKRMREKIERLKEDGAERGERTVAVVGAG 237
Query: 244 ----------------EKGI----VQAINVETTICPTGTPGNREAALKVLS-ARKVQLVL 282
E G+ ++ + + + + T G + AA K L A V++V
Sbjct: 238 YAGVELALCLARWFEREDGLKDVKIKLVAKDGKVLSSATVGGKNAARKALEKASNVEIVD 297
Query: 283 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 342
G VG E S ES + NI+ K +++ +ES D+ W
Sbjct: 298 GV-------VGAIERS--SSESSKV-NISLTKG--------DSSLQTIES----VDMCCW 335
Query: 343 TVGSKPLLPHVEPPNNRLHDLPLNA---RGQAETDETLCVKGHPRIFALGDSSALR---- 395
TVG LP E +D P G+ TD TL V G+ R+FALGD+S R
Sbjct: 336 TVGLSAKLPTSE------NDWPFEQDPRTGKIVTDSTLKVAGYDRVFALGDNSIQREYEK 389
Query: 396 -DSSGRP--LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 452
D++ R PATAQVAFQ AD+ WN+W+AIN + LLPFR+Q+LG+MM LG +AAV
Sbjct: 390 KDAANREEEKPATAQVAFQAADYCAWNVWSAINKKSLLPFRYQHLGDMMTLGDKEAAVQF 449
Query: 453 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDS 498
E TLDG + R+LAYL R+PT+ RLK+G WL SAI S
Sbjct: 450 PVGEETTLDGSAAFALRRLAYLYRMPTNGQRLKIGRKWL--SAISS 493
>gi|308803224|ref|XP_003078925.1| putative NADH dehydrogenase (ISS) [Ostreococcus tauri]
gi|116057378|emb|CAL51805.1| putative NADH dehydrogenase (ISS) [Ostreococcus tauri]
Length = 453
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 165/445 (37%), Positives = 235/445 (52%), Gaps = 61/445 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PR+ +LGGGFGGLYTALRLE L W KP+V++VD+ + F FKP+LYEL++ + E+
Sbjct: 13 PRVVVLGGGFGGLYTALRLERLDWTRTTKPEVVVVDRGDAFAFKPLLYELVNETMTRDEV 72
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGV--NGPMACTHGGTVLLESGLIVEYDWLVL 197
AP F +LL TGV+ + V+ P D L +G + GGT L G + YD+LVL
Sbjct: 73 APTFEELLRPTGVRHVRGTVRGFEP-DGLSETRDGTPCSSSGGTCTLADGTSLTYDYLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS---------------------ELER 236
+LG V GA E A + EDA ++ L EL
Sbjct: 132 ALGTATNDGGVEGARERAIALNGAEDAMKISSALGEAAAAGRRARVAVVGGGLSGVELAS 191
Query: 237 RNFERLEEK---GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
ERL G V I + + G REAA +VL V +V G +R + V
Sbjct: 192 VVAERLNASPSGGSVDVITPNGRVMSSAPVGQREAATRVLEKAGVNVVSGRVLR-LSDVN 250
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
+ +A V S + + ++ + Y D+V WT+G + P
Sbjct: 251 DIDA-VSTAASVRLADEIGEERDEVY------------------DIVCWTIGQRAETPKE 291
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA----LRDSSGRPLPATAQVA 409
P + + +TD TL V GH R++A+GD+S+ + ++S LP+TAQVA
Sbjct: 292 WP-------VATTGARKIKTDATLRVNGHSRVYAVGDASSSSAEVMNASWNELPSTAQVA 344
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS-PSFVEGVTLDGPIGHSA 468
FQQAD+A WN+WA++N R LPFR+Q+LG+MM+LG DAAV+ P V +TL+GP +
Sbjct: 345 FQQADYAAWNIWASMNGRTALPFRYQHLGDMMVLGELDAAVAFP--VGDITLEGPAAAAL 402
Query: 469 RKLAYLIRLPTDEHRLKVGVSWLTK 493
R+LAYL R+PTDE R+K+G W+ +
Sbjct: 403 RRLAYLYRMPTDEQRMKIGSKWVQQ 427
>gi|119485382|ref|ZP_01619710.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Lyngbya sp. PCC 8106]
gi|119457138|gb|EAW38264.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Lyngbya sp. PCC 8106]
Length = 425
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 223/462 (48%), Gaps = 83/462 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ RICILGGGF GLYTAL L+ L W KKP+++L+DQ +RF+F P LYEL++GE+
Sbjct: 10 RTSSRICILGGGFAGLYTALYLDRLSWSKGKKPEIILIDQKDRFLFTPFLYELITGELQT 69
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WE+AP F LL +T ++F + VK + +H + L+ G + YD+LV
Sbjct: 70 WEVAPSFQKLLMDTDIKFHQGTVKGIDLQEH-------------QIQLQDGDPLLYDYLV 116
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER-------------------- 236
L++G D V G + + F TLEDA R+ KL LE
Sbjct: 117 LAVGRRSYSDTVSGVPTYTYAFRTLEDAIRLQDKLHILENSIQSKIRVGIIGGGANAVEL 176
Query: 237 --RNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
+ +RL E+G + I TI + ++ A + L +R VQ+ +
Sbjct: 177 AGKLVDRLGERGEISLIIRGKTILKNFSTSCQKVAYQSLISRGVQV-------------K 223
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA--DLVLWTVGS--KPLL 350
FE V + ++ D QI+ DLV+ T+G+ + L
Sbjct: 224 FETKVNALDEDSLTLTQGD-------------------QIYTTPIDLVIGTMGTQAREWL 264
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
+E + N+RGQ T TL + +P +FALGD + +R+ +P TAQ AF
Sbjct: 265 YFLECKH--------NSRGQLLTQPTLQLLDYPEVFALGDLADIRNRRDEQVPTTAQAAF 316
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
QQ + A NL AI +PL F + +LG+M+ LG + A VS SF G+ L G I +RK
Sbjct: 317 QQGNCAAKNLKLAIEKQPLRAFHYLHLGQMLTLGIHAATVS-SF--GIELTGFIACLSRK 373
Query: 471 LAY-LIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLS 511
Y L+R+PT HR +V L + +L L + LS
Sbjct: 374 CVYILLRMPTISHRYEVVCYRLKHLGLKGFQILTQELGQGLS 415
>gi|113477516|ref|YP_723577.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Trichodesmium erythraeum IMS101]
gi|110168564|gb|ABG53104.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Trichodesmium erythraeum IMS101]
Length = 405
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 157/448 (35%), Positives = 214/448 (47%), Gaps = 86/448 (19%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P K +ICILG GFGGLYTAL L S K +V+L+DQ + VF P+LYE+++ E+
Sbjct: 12 PSNKITKICILGSGFGGLYTALYLNSFWGFKHKNCEVILIDQHDHLVFTPLLYEVITDEL 71
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
WEIAP FA LL N + F +D ++ + LLE G + YD+
Sbjct: 72 QTWEIAPSFAKLLQNKKILFCQDTIQ------------NIDFKARKVKLLEQGSLA-YDY 118
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-------------- 240
LV+++G +P AE F TL DA +++KL LE N E
Sbjct: 119 LVITVGVTN--GKLPTTAENVLTFRTLADAQILEKKLQTLENSNQELIRVSIVGGGPSGV 176
Query: 241 --------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 292
RL +G ++ I I TP R+ A + L R V + L
Sbjct: 177 ELAGKIADRLGRRGEIRLIERGKEILKNFTPATRKNAQRALDKRNVLISL---------- 226
Query: 293 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 352
E +V E I ++ ES I DLVLWT G++ +
Sbjct: 227 ---ETTVDTIEVDKITLWQSN-----------------ESVIILTDLVLWTAGTQ--VRE 264
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
N H N+RGQ ++TL + G+ +FALGD + + +G+ LPATAQVA+QQ
Sbjct: 265 WVKNLNCYH----NSRGQLICEQTLQLVGYSEVFALGDIAEILYPNGKKLPATAQVAYQQ 320
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
A A NLWA +N++ PFR+ +LGEM+ LG N AAVS SF G++L G + R
Sbjct: 321 ASQAAKNLWAILNNKRPKPFRYLHLGEMITLGVNSAAVS-SF--GISLHGWLAALVRLSV 377
Query: 473 YLIRLPTDEH-------RLKVGVSWLTK 493
YL RLPT H RLK+ WL K
Sbjct: 378 YLQRLPTFSHGFQVLCNRLKI---WLAK 402
>gi|303280049|ref|XP_003059317.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459153|gb|EEH56449.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 560
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 149/453 (32%), Positives = 222/453 (49%), Gaps = 65/453 (14%)
Query: 93 YTALRLESLVWQDD----KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLA 148
YTAL+L++L W +P+V LVD+++ FVFKPMLYEL++ + WE+AP FA+LLA
Sbjct: 93 YTALKLDALSWDATVGGPPRPRVTLVDRADDFVFKPMLYELVNETMRPWEVAPSFAELLA 152
Query: 149 NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVV 208
T V+ K + G V L G V YD+LV ++GA V
Sbjct: 153 PTAVRLVK---GVAVDVREDDDAEGEGEGGAGVVTLMDGTTVPYDYLVCAVGANASDAGV 209
Query: 209 PGAAEFAFPFSTLEDACRVDRKLSELERR-----------------NFERLEEKGIV--- 248
GA +FA P + +DA R+ L ++ER +E G+V
Sbjct: 210 AGAKDFAIPLNDAKDASRLAGALRDIERAADKTEDEARRRVAVVGGGLAGVELAGVVAER 269
Query: 249 -QAINVETTICPTG------TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQ 301
+ + P+G G R AA +VL V + G V + + E
Sbjct: 270 TRGVATVELFTPSGGIMRGAPSGQRAAATRVLRDAGVVMREGARVVAVEACADVERVRAC 329
Query: 302 PESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
E+ + +D + +E E + D+V WTVG + + P P
Sbjct: 330 GEAATVTVETSDGATTTVTVETSDGATTTE----DFDVVAWTVGQRAVTPESWP------ 379
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALR---------------DSSGRP----L 402
P +++G+ T++TL V G +FALGD++ + D + P L
Sbjct: 380 -FPRDSKGRIVTEDTLRVVGRSNVFALGDAAVVASSSSSNPNDSNPNDADFASPPPSEAL 438
Query: 403 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 462
P+TAQVAFQQAD+A WN+W+A++ RPLLPF++Q+LG+MM LG+ DAAV+ V +DG
Sbjct: 439 PSTAQVAFQQADYAAWNVWSAMSSRPLLPFKYQHLGDMMTLGKTDAAVALPLNLAV-VDG 497
Query: 463 PIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSA 495
P + R+ AYL R+PT+EHR K+ W+ + A
Sbjct: 498 PAAAALRRAAYLYRMPTNEHRAKLAAEWIEQGA 530
>gi|440683992|ref|YP_007158787.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anabaena cylindrica PCC 7122]
gi|428681111|gb|AFZ59877.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anabaena cylindrica PCC 7122]
Length = 407
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 145/433 (33%), Positives = 222/433 (51%), Gaps = 74/433 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RICILGGGFGGLYTAL L + ++ L+++ F+F P+LYE+++GE+ EIA
Sbjct: 21 RICILGGGFGGLYTALELGKIAQIRQPDYEITLIEKRAHFLFTPLLYEVVTGELHNGEIA 80
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + LL+++ QF++ ++ + + L V L++G I+ YD+LVL++G
Sbjct: 81 PTYKKLLSDSQAQFYQAEIQGVDLENQL-------------VNLQNGEILTYDYLVLAVG 127
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF--------------------- 239
E +LDVVPGA ++A F TL DA + +L LE N
Sbjct: 128 KETRLDVVPGATKYARTFRTLADAEYLKNRLQFLEASNIPLIRIAIAGAGPNGVEIACKL 187
Query: 240 -ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
+RL+++G ++ I+ I T + G+R A+ + L R V++ L + I+
Sbjct: 188 ADRLKKRGEIRLIDRGNEILKTFSKGSRTASYRALVKRGVRIELDTNIEAIK-------- 239
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
P++ + + + F+ DLVLWT G++ +E N
Sbjct: 240 ---PDAIIVNHHGT-------------------THKFQTDLVLWTGGNQS----IEWVKN 273
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
+ N +GQ TL + G+P +F LGD + +RD G PATAQ AFQQA A
Sbjct: 274 L--NCQHNQQGQLIATPTLQLAGYPNVFVLGDLAEIRDIQGNESPATAQAAFQQAPCAAR 331
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
N+ A I R L PF + +LGEM+ LG +A V SF G+TLDG + R+ Y+ RLP
Sbjct: 332 NIRAKITGRKLKPFSYLHLGEMLTLGIKNAVVY-SF--GITLDGNLARIIRRGVYIQRLP 388
Query: 479 TDEHRLKVGVSWL 491
T +H+L+V W+
Sbjct: 389 TLKHKLQVAKRWI 401
>gi|299471064|emb|CBN78924.1| NADH dehydrogenase (ubiquinone) [Ectocarpus siliculosus]
Length = 543
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 159/516 (30%), Positives = 246/516 (47%), Gaps = 99/516 (19%)
Query: 28 FSSKSYLSFKTCRKNRF--ISFAASNSSGRNGDLV--VTSEDESA----SQTYTWPDKKK 79
F S S + +++R I + +GR ++ + E++ ++T+ +
Sbjct: 38 FGGSSTTSHEQQQQHRCLRIGVGSRGGAGRESSVLAGINGEEDDVDVVPARTFVSSSNQP 97
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
RIC+LGGGFGGLYTALRL+ + W+ ++P V LVD+ ++F F P+LYE G + E+
Sbjct: 98 ERICVLGGGFGGLYTALRLQKMPWRG-RRPVVTLVDKRDKFTFLPLLYEFAIGNAELDEV 156
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV--------- 190
AP F +LLA +GV F + C S ++ ++G G T G ++
Sbjct: 157 APTFRELLAGSGVSFVQG-----CVS-NIDLDGKGVTVAGATSDDLDGFMISDNADETRT 210
Query: 191 -EYDWLVLSLGAEPK--LDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK-- 245
EYD LVL++GAEP +D VPGA E A PF ++ED+ RV + + +L+ E+ +
Sbjct: 211 LEYDKLVLAVGAEPASGIDKVPGARERAIPFYSIEDSYRVKQAIIKLKALVREKAVSRVV 270
Query: 246 -------GIVQAINVETT--------------------ICPTGTPGNREAALKVLSARKV 278
G+ + N+ T + TPGNREA L+ L+ V
Sbjct: 271 VVGGSYAGVELSCNLATELGGGRKGMGKVEVTLAAGSEVLSMATPGNREAGLRRLTESGV 330
Query: 279 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 338
++ G V ++ G G + K +D E +I AD
Sbjct: 331 HVMKGARVSEVKEGG-----------GVVLQQGEGKGTDSTFRE----------EIM-AD 368
Query: 339 LVLWTVGSKP--LLPHVEPPNNRLHDLPLNARGQAETDETLCV-------KGHPRIFALG 389
L++WT GS+P LL + D+ +ARG+ E D L + G ++ LG
Sbjct: 369 LLVWTAGSQPSSLLDSL--------DVRKDARGRIEVDRRLRLIDAAGNDGGVGDVYCLG 420
Query: 390 DSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
D +A+ G L AQVA QQ+D+ +N+WA R L FRF NLGEMM LG D +
Sbjct: 421 DIAAV---EGLELGCNAQVALQQSDYVAYNIWADKERRKPLDFRFLNLGEMMNLGGLDGS 477
Query: 450 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLK 485
++ + V L G AR+ Y +R+PT+ R++
Sbjct: 478 LT-TLGGRVKLSGKAAGLARRAVYAVRMPTNPQRVR 512
>gi|428226736|ref|YP_007110833.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geitlerinema sp. PCC 7407]
gi|427986637|gb|AFY67781.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geitlerinema sp. PCC 7407]
Length = 429
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 153/419 (36%), Positives = 216/419 (51%), Gaps = 47/419 (11%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
ICILG GFGGLYTAL L W +PQ++LV+ +F+F P+LYELL+GE++ W+IAP
Sbjct: 8 ICILGAGFGGLYTALALAQQRW-PGPRPQIVLVEPGTQFLFSPLLYELLTGELEPWQIAP 66
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
F LL T V F++ RV+ GV+ P V LE G + YD LVL++G
Sbjct: 67 SFQALLGETPVTFWQGRVQ--------GVDLPYR-----QVWLEDGRGITYDQLVLAVGQ 113
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
VPGAAE+A+ F LE+ R+ ++L ELE V I G
Sbjct: 114 GTASAGVPGAAEYAYGFRRLEECDRLHQRLLELEAAGRS-----------PVRVAIAGAG 162
Query: 262 TPGNREAALKVLS--ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 319
P E A K+ + Q++L F R R + +F ++++ + A+ +
Sbjct: 163 -PSGVELAGKLADRLGDRGQILL--FDRGDRLLKDFPGALQRAAALALAQRRVRVSLQTS 219
Query: 320 ILELQPAIKGLE----SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL--NARGQAET 373
I E++P +E + DLV+WT G ++ + LP N +GQ T
Sbjct: 220 ICEVRPDAVIVERHGQTHDIPVDLVVWTGGKAS--------HDWVQALPCAKNDQGQVRT 271
Query: 374 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 433
TL + +P +FALGD + + S +P TAQ A+QQA A NL + I R L FR
Sbjct: 272 RPTLQLLDYPEVFALGDVADIGVSPRERVPDTAQAAYQQAPVAAHNLRSQIQGRSLRAFR 331
Query: 434 FQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 492
F+ LG+MM +G A V SF G+TL G + R+ AYL+RLPT HR +V SWL+
Sbjct: 332 FRPLGDMMTVGYQSAVVH-SF--GLTLTGRLAAVVRQWAYLLRLPTARHRGQVAWSWLS 387
>gi|172038965|ref|YP_001805466.1| putative FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. ATCC 51142]
gi|354552748|ref|ZP_08972056.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. ATCC 51472]
gi|171700419|gb|ACB53400.1| putative FAD-dependent pyridine nucleotide-disulphide
oxidoreductase [Cyanothece sp. ATCC 51142]
gi|353556070|gb|EHC25458.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. ATCC 51472]
Length = 416
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 139/457 (30%), Positives = 218/457 (47%), Gaps = 87/457 (19%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
IC+LGGGF GLYTAL L + + ++ LV++++ F+F P+LYEL++GE+ WEIAP
Sbjct: 9 ICVLGGGFSGLYTALYLSNYPQVKLGQWKITLVERNDNFLFTPLLYELITGELQRWEIAP 68
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ LLA T ++F + VK + + V L++ + YD+LVL LG
Sbjct: 69 TYQKLLAGTSIKFCQHIVKKIDLENR-------------QVKLDNDNSLSYDYLVLGLGT 115
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE---RRNF------------------- 239
+ + +PG A F TL D ++ K+ LE R++
Sbjct: 116 QNRWVDIPGLKTHALTFRTLRDLEQLQAKIHYLETLDRKHLRVAIIGGGPNGVELSCKLA 175
Query: 240 ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR----VGEF 295
+RLE++ V I+ I + G R+A+ + L +R VQL L V I + +
Sbjct: 176 DRLEKRAEVLLIDRGNQILKGLSNGIRKASYRALGSRGVQLYLNTNVEEIEKTSITINHG 235
Query: 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHV 353
E S+ P D+V+W G SKPL+ +
Sbjct: 236 EHSINVP----------------------------------VDMVIWVAGTESKPLIQSL 261
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
+ + G+ T+ L + +P +FALGD + + + + LP TAQVA+QQA
Sbjct: 262 --------NCQQTSSGRLLTNSRLQLIDYPEVFALGDLAQISNKK-KSLPTTAQVAYQQA 312
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
A N+ A I +PL F + +LG+M+ LGR A +S G+ ++G IG R+LAY
Sbjct: 313 SCAAKNIAAIIERKPLKSFNYLHLGDMLTLGRRTAIISSY---GININGQIGGMLRRLAY 369
Query: 474 LIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVL 510
+ RLPT HRL+V +++ K + Q +T +L
Sbjct: 370 IFRLPTMRHRLQVLRNFVQKIGLKISRFFQEIITNLL 406
>gi|416379428|ref|ZP_11683895.1| NADH dehydrogenase [Crocosphaera watsonii WH 0003]
gi|357265906|gb|EHJ14611.1| NADH dehydrogenase [Crocosphaera watsonii WH 0003]
Length = 416
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 137/458 (29%), Positives = 219/458 (47%), Gaps = 79/458 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K IC+LGGGF GLYTAL L ++ LV++++ F+F P+LYEL++GE+
Sbjct: 4 KNSINICVLGGGFSGLYTALYLCYHPQVKSGDWKITLVERNDNFLFTPLLYELITGELQR 63
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP + LLA T ++F + V + V LE+ + YD+LV
Sbjct: 64 WEIAPTYQKLLAGTSIKFCQHIVTKIDLEKR-------------RVALENDDSLSYDYLV 110
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE---RRNF-------------- 239
L LG + +PG A F TL+D ++ K+ LE R++
Sbjct: 111 LGLGTKNYWADIPGLKNHALTFRTLQDLEKLQAKIHYLETLDRKHLRVAIIGGGPNGVEL 170
Query: 240 -----ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
+RLE++G + I+ I + G R+A+ + L +R+VQL L
Sbjct: 171 SCKLADRLEKEGGILLIDRGNHILKGFSKGVRKASYRALGSRRVQLYL------------ 218
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPH 352
N ++ + YI+ G ++ D+V+W G SK L+
Sbjct: 219 --------------NTNVEEIGENYII----LNHGEQTMNVPVDMVIWVAGTQSKQLIQS 260
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
+ + G+ + +L + HP +FALGD + + + + + LP TAQVA+QQ
Sbjct: 261 LNCQQSN--------SGKLLVNPSLQLIDHPEVFALGDLAQISNKN-KSLPGTAQVAYQQ 311
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
A + N+ A I +PL PF++ +LG+M+ LGR A +S G+ + G +G R+LA
Sbjct: 312 ASYTANNIAAIIKGKPLKPFKYLHLGDMLTLGRRTAIISSY---GINISGQLGGIMRRLA 368
Query: 473 YLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVL 510
Y+ RLPT HRL+V ++ K + +S +T +L
Sbjct: 369 YIFRLPTMRHRLQVLRNFAQKIGLKIRIFFRSIVTTLL 406
>gi|126661163|ref|ZP_01732240.1| type 2 NADH dehydrogenase [Cyanothece sp. CCY0110]
gi|126617536|gb|EAZ88328.1| type 2 NADH dehydrogenase [Cyanothece sp. CCY0110]
Length = 416
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 220/447 (49%), Gaps = 88/447 (19%)
Query: 76 DKKKP-RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
+ KKP IC+LGGGF GLYTAL L + + ++ LV++++ F+F P+LYEL++GE+
Sbjct: 2 NTKKPINICVLGGGFSGLYTALYLSNHPHVKSSQWKITLVERNDNFLFTPLLYELITGEL 61
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
WEIAP + LLA T ++F + V+ + + V L++ + YD+
Sbjct: 62 QRWEIAPTYQKLLAGTSIKFCQHIVEKIDLENR-------------QVKLDNDDSLNYDY 108
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE---RRNF------------ 239
LVL LG + + +PG +A F TL D ++ K++ LE +++
Sbjct: 109 LVLGLGTQNRWVDIPGLKNYALTFRTLRDLEQLQAKINYLESLDKKHLRVAIIGSGPNGV 168
Query: 240 -------ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR- 291
+RLE++ V I+ I + G R+A+ + L +R+VQL L V+ I +
Sbjct: 169 ELSCKLADRLEKQAEVLLIDRGNQILKGLSKGIRKASYRALGSRRVQLYLNTNVQEINKN 228
Query: 292 ---VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--S 346
+ E ++ P ++V+W G S
Sbjct: 229 SITINYGEQTINVP----------------------------------VNMVIWVAGTQS 254
Query: 347 KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA 406
KPL+ + + + G+ T+ L + +P +FALGD + + + + PATA
Sbjct: 255 KPLIKSL--------NCQQTSSGKLLTNSRLQLIEYPEVFALGDLAQISNKK-KSNPATA 305
Query: 407 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 466
QVA+QQA A N+ A I +PL F + +LG+M+ LG+ A +S G+ ++G IG
Sbjct: 306 QVAYQQASCAAKNIAAIIEGKPLKSFNYLHLGDMLTLGKRTAIISSY---GININGQIGG 362
Query: 467 SARKLAYLIRLPTDEHRLKVGVSWLTK 493
R+LAY+ RLPT HRL+V +++ K
Sbjct: 363 MLRRLAYIFRLPTMRHRLQVLRNFVQK 389
>gi|218441425|ref|YP_002379754.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7424]
gi|218174153|gb|ACK72886.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 7424]
Length = 412
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 147/457 (32%), Positives = 223/457 (48%), Gaps = 74/457 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K +I ILGGGFGGLYTAL L K ++ LV+ + F+F P+LYEL++GE+
Sbjct: 3 KDYYQIVILGGGFGGLYTALYLSRHRLFQSGKCKITLVEPKDHFLFTPLLYELITGELQR 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WEIAP + LLA+T ++ + VK + V LE+ + YD+LV
Sbjct: 63 WEIAPSYQKLLASTPIRLCQHSVKEINFKTR-------------QVYLENAQQLSYDYLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV----------DRKL------------SEL 234
+++G E + + G + +A F TLED + DR++ EL
Sbjct: 110 VAVGTETRWADISGLSTYALTFRTLEDLEYLKGQLHLLEISDRQILRLGVIGGGANGVEL 169
Query: 235 ERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
+ +RL ++G V I I +PG R AA K LS R+V + E
Sbjct: 170 ACKLADRLGKRGEVILIERGKNILKGFSPGVRSAAWKALSLRRVNV-------------E 216
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
A+V+ E+ + + D+ + + DLV+W G++ E
Sbjct: 217 LNATVEAIEANQMTLVQYDQRNQ-----------------YPIDLVIWATGTQSR----E 255
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
+ D N +G+ T TL + +P +FALGD + + SS + +PATAQ AFQQA
Sbjct: 256 WVTDL--DCQHNHQGKLLTYPTLQLIDYPEVFALGDITEIHSSSQKSVPATAQAAFQQAS 313
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
A N+ A I +PL F + +LG+M+ LG+ A +S F + +DG +G R+LAY+
Sbjct: 314 CAAKNIVALIQHKPLKVFHYHHLGDMLTLGQKSAIISSFF---LNIDGRLGDIIRRLAYI 370
Query: 475 IRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLS 511
+RLPT HRL+V SW K I L + +T++L
Sbjct: 371 LRLPTPRHRLQVLRSWFIKLIIRVKRLFRWRITQLLQ 407
>gi|224012847|ref|XP_002295076.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969515|gb|EED87856.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 432
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 146/458 (31%), Positives = 214/458 (46%), Gaps = 83/458 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDK-----------KPQVLLVDQSERFVFKPMLY 127
+P + ILGGGFGG+ TAL L SL W +P++ L+D+SERFVF P+LY
Sbjct: 1 QPHVVILGGGFGGINTALTLPSLPWNSHSVSSGKQETSCIQPRITLIDKSERFVFLPLLY 60
Query: 128 ELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTV-LLES 186
EL + E+AP F LL +T V + + VN + T +E+
Sbjct: 61 ELCVEDASLDEVAPTFKTLLESTQV-------------EGIDVNNQQVVIYKSTTNTIET 107
Query: 187 GLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL-----ERRNFER 241
++YD LV++ GAE LD +PGA E+A PF T+E + R+L+ L ER E
Sbjct: 108 ---IDYDALVIATGAEISLDAIPGATEYALPFYTVEQCLELKRRLALLDSYLDERAKMEE 164
Query: 242 LEEKGIVQ-----------AINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 290
+++K V A+N+ + + + +KV + + VL Y R
Sbjct: 165 MQQKVNVVVVGGGYSGVELALNLVARLGGG----DDDGDVKVSLVHRGEQVLEYATEYNR 220
Query: 291 RVGE---FEASVKQPESGAIPNIA----ADKNSDKYILELQPAIK----GL---ESQIFE 336
+ G EA V S ++ + ++S + + Q +K G+ E+ +
Sbjct: 221 KAGMERLVEAGVNVLTSTSVVEVTPWEEETQHSSSALTKQQCMVKLSTSGVSNDETSLLP 280
Query: 337 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 396
++LWT G+ P N + LP + G+ T TL V +P +FA+GD S +
Sbjct: 281 TTILLWTAGATPTSKVNAGVRNSI--LPRDVMGRILTSPTLNVPEYPNVFAIGDCSRPKK 338
Query: 397 SSGRPLPATAQVAFQQADFAGWNLWAAI-NDR--------------PLLPFRFQNLGEMM 441
P P TAQVA Q A A WN++A + ND LLPF F NLGEMM
Sbjct: 339 V---PYPGTAQVAMQMATVAAWNIYATLSNDSNAGKARAGSNRETVKLLPFSFLNLGEMM 395
Query: 442 ILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
LG NDA ++ + V L GP R+L Y R+PT
Sbjct: 396 TLGSNDATIT-TLGGRVGLSGPAASWLRRLIYAARMPT 432
>gi|428773221|ref|YP_007165009.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanobacterium stanieri PCC 7202]
gi|428687500|gb|AFZ47360.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanobacterium stanieri PCC 7202]
Length = 388
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 130/434 (29%), Positives = 203/434 (46%), Gaps = 80/434 (18%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKPMLYELLSGEV 134
KK+ R+CI+GGGFGGLYTA+ L L DKK +++L+DQ+ F+F P+LYE ++ E+
Sbjct: 4 KKRHRVCIIGGGFGGLYTAIELNKL----DKKRSLEIILIDQNSHFLFTPLLYEAITEEI 59
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
WEIAP F LL T + F +V + + + E + YD+
Sbjct: 60 THWEIAPSFDLLLRKTAITFINKKVINIDFDNQ-------------QIFYEDQDSINYDY 106
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR---KLSELERRNF------------ 239
LVL++G + V GA E+A F TL+D R++ KL+ + + F
Sbjct: 107 LVLAVGQKSYF-AVEGAKEYAHSFKTLKDVFRLEHTMEKLANIPQNKFNVTVVGAGANGV 165
Query: 240 -------ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 292
++L++K V I+ I G ++ A K L R +Q+ L
Sbjct: 166 EIAGKITDKLKDKAQVILIDRGIEILKNFPRGMQQYATKSLIKRNIQIYL---------- 215
Query: 293 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 352
E ++ + E I + N D I + +L LWTVG+
Sbjct: 216 ---ETTINKVEEHKI-HFTDHLNQDYEI---------------DFNLTLWTVGN------ 250
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
+ P +L + +G+ T T + +FA+GD +L D G+ +PA AQ AFQ
Sbjct: 251 MTPKWINQLNLSQDEQGKILTKPTFQLWNFENVFAIGDLVSLIDKQGKKVPAKAQAAFQG 310
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
+ N+ A + L F +++LG+MM +G N+ +S V G+T+ G I RK A
Sbjct: 311 SHILAHNIMALSQHKKLKLFSYRHLGDMMTVGINNDIIS---VAGITMTGFIASIIRKWA 367
Query: 473 YLIRLPTDEHRLKV 486
Y+ R+PT H L+V
Sbjct: 368 YIFRMPTFNHCLEV 381
>gi|434399461|ref|YP_007133465.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Stanieria cyanosphaera PCC 7437]
gi|428270558|gb|AFZ36499.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Stanieria cyanosphaera PCC 7437]
Length = 405
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 141/430 (32%), Positives = 211/430 (49%), Gaps = 78/430 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ICILGGGFGGLYTAL L + ++ LV+ + F+F P+LYELL+ E+ WEIA
Sbjct: 7 KICILGGGFGGLYTALYLSNSALVKSGDWEINLVEPKDNFLFTPLLYELLTEELQPWEIA 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + LL T + F++D+V + V L G ++ YD+LVLS+G
Sbjct: 67 PSYQKLLIGTKINFYQDQVSNINLKTR-------------QVQLNEGTLLTYDYLVLSIG 113
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNF------------------- 239
+ KL +PGA A F +L DA +++ +L LE RN
Sbjct: 114 RKNKLLDIPGANTHALTFRSLLDAQKLNERLRILEASGRNTIKIAVIGAGANGVELACKI 173
Query: 240 -ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
+RL + V I+ I + G ++AA K + +++QL L E +
Sbjct: 174 SDRLLGRAQVLLIDRGQEILKNFSLGVKKAAFKAIQNKQIQLYL-------------ETN 220
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
V+Q ++ I +K + DLVLWT G++ +
Sbjct: 221 VQQIKAEQI-----------------TLVKNNQLITCPVDLVLWTTGTETI--------Q 255
Query: 359 RLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
++DL N+ GQ T TL + +P +FALGD + +R+S + +P TAQ A+QQA A
Sbjct: 256 LINDLGCQQNSFGQLLTRPTLQLIDYPEVFALGDVADIRNSKTKLVPITAQAAYQQASHA 315
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
NL AAI + L F + +LG+M+ LG+ + AV SF G+ L G + R+L Y+ R
Sbjct: 316 AKNLQAAIEGKKLKRFYYLHLGDMLTLGK-EVAVISSF--GINLSGSLAGKLRRLIYIQR 372
Query: 477 LPTDEHRLKV 486
LPT HR +V
Sbjct: 373 LPTLRHRWQV 382
>gi|428204162|ref|YP_007082751.1| NADH dehydrogenase, FAD-containing subunit [Pleurocapsa sp. PCC
7327]
gi|427981594|gb|AFY79194.1| NADH dehydrogenase, FAD-containing subunit [Pleurocapsa sp. PCC
7327]
Length = 414
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 144/449 (32%), Positives = 219/449 (48%), Gaps = 81/449 (18%)
Query: 76 DKKKPR------ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL 129
DK KP ICILGGGFGGLYTAL L W K +++LV+Q++RF+F P+LYEL
Sbjct: 3 DKVKPTIANPIRICILGGGFGGLYTALYLSRFAWVRAGKCKMILVEQNDRFLFTPLLYEL 62
Query: 130 LSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI 189
++ E+ WEIAP + LL T + F++ ++ + V+L+ G+
Sbjct: 63 ITEELQPWEIAPSYQKLLGGTEIAFYQQTIRDVDLKTR-------------QVVLDDGVE 109
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLE------ 243
+ YD+LVL++G + + +PG A F TL D R++ +L LE + +RL
Sbjct: 110 LAYDYLVLAVGTQNRWANIPGVQTHALTFRTLADVERLEARLKILEASDRQRLRLAAIGG 169
Query: 244 ----------------EKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 287
+G V I I + G R+AA + L +RK++
Sbjct: 170 GANGVELACKLADRLGRRGQVHLIERGEEILKNFSSGVRKAAYRALRSRKIK-------- 221
Query: 288 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 347
I R+ E A I AD + ++ + + DLVLWT G++
Sbjct: 222 -IDRLTEVTA------------IEADSMT---------VVRDGKIVVLPVDLVLWTAGTQ 259
Query: 348 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 407
RL D P + RG+ TL + +P +FALGD + + + S +P+PATAQ
Sbjct: 260 A-----RDWIARL-DCPKSDRGKLLIYPTLQLVDYPEVFALGDLADIGNGS-QPVPATAQ 312
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 467
A+QQA A N+ A + + L PF + +LG+M+ LG+ A VS S + ++G +
Sbjct: 313 AAYQQASRAAKNIAATLQGKRLQPFCYLHLGDMLTLGKGAAVVSNSL---LNIEGKPAAA 369
Query: 468 ARKLAYLIRLPTDEHRLKVGVSWLTKSAI 496
R+L Y+ RLPT HRL+V L K +
Sbjct: 370 IRRLVYIQRLPTLRHRLQVFKHLLVKVVL 398
>gi|87301401|ref|ZP_01084242.1| putative NADH dehydrogenase, transport associated [Synechococcus
sp. WH 5701]
gi|87284369|gb|EAQ76322.1| putative NADH dehydrogenase, transport associated [Synechococcus
sp. WH 5701]
Length = 413
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 150/453 (33%), Positives = 211/453 (46%), Gaps = 75/453 (16%)
Query: 64 EDESASQTYTWPDKKKP--RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121
E+ S S T P P + I GGGFGGLYTAL L S P +LLV+ +RF+
Sbjct: 2 EEPSRSPANTPPQASGPIRPVLIAGGGFGGLYTALALAS----QRHHPPILLVEPQQRFL 57
Query: 122 FKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT 181
F P+LYELLS E+ WE+APR+ LLA+ GV + +DR+ + S G
Sbjct: 58 FLPLLYELLSEELRGWEVAPRYDTLLASRGVAWLQDRISRIDAS-------------AGC 104
Query: 182 VLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER--RNF 239
V E G + Y LV++ G+ +PG E A PF +L D + + L R
Sbjct: 105 VYTEQGRQLAYSRLVIATGSRGTSYGIPGVEELAIPFRSLADVEHLQELVQHLRSHPRPL 164
Query: 240 ERLEEKG--------------------IVQAINVETTICPTGTPGNREAALKVLSARKVQ 279
+RL G +++ I T + P NRE A L R ++
Sbjct: 165 QRLALVGAGPSGVELACKLADLLQGSTVIELIEQGTDLLPQARAFNREQARSALLRRDIR 224
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 339
L R RV E + L L +G + D
Sbjct: 225 L------RTHTRVLALEPG-------------------RLELSLTAGGEGSSRETLPVDG 259
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 399
V+WT G P +EP + L+ RG+ + TL +K P +FA+GD + + D+ G
Sbjct: 260 VIWTAGVTVAPPPIEPAAS------LDDRGRLLCESTLELKQTPGVFAIGDVAHVADADG 313
Query: 400 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 459
PL ATAQVAFQQAD NL ++ L PFR+++LGEM+ LG +A+++ G+T
Sbjct: 314 APLAATAQVAFQQADCLAENLLRSLEGESLQPFRWKDLGEMISLGIGEASLTGL---GLT 370
Query: 460 LDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 492
L GP + R+L YL RLP H+L+V WL+
Sbjct: 371 LAGPAAYRIRQLTYLSRLPGLPHQLRVAAGWLS 403
>gi|166367035|ref|YP_001659308.1| type 2 NADH dehydrogenase [Microcystis aeruginosa NIES-843]
gi|166089408|dbj|BAG04116.1| type 2 NADH dehydrogenase [Microcystis aeruginosa NIES-843]
Length = 326
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 184/374 (49%), Gaps = 82/374 (21%)
Query: 146 LLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205
+LANT V F + V + ++H + L++ + YD LV++LG + L
Sbjct: 1 MLANTPVDFQQGTVTAIDVNNH-------------KITLDNQKDICYDRLVIALGGQSSL 47
Query: 206 DVVPGAAEFAFPFSTLEDACRVDRKLSELERRN----------------------FERLE 243
D +PGA A PF +LEDA R+ +L LE+ + ERL
Sbjct: 48 DFLPGARTHAIPFRSLEDAYRLRDRLKTLEQSDRDKIRVAIIGGGYSGVELACKLAERLG 107
Query: 244 EKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPE 303
E+G ++ I + I T NR+ A K L R V L + E +V
Sbjct: 108 ERGRIRLIERNSDILGPSTQFNRDTAKKALEKRLVWL-------------DLETTV---- 150
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNRLH 361
AD +D+ L+ + I + DL+LWTV + PLL
Sbjct: 151 --------ADIQADRLSLDYKGQIDNIP-----VDLILWTVSPIASPLLA---------- 187
Query: 362 DLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
+LP+ + R + ++ L +P I+A+GD++ RD +P ATAQVA QQ+D+ WN
Sbjct: 188 NLPIAHSERKLLKVNQYLQTVENPSIYAIGDAADSRDQEDKPYAATAQVALQQSDYCAWN 247
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+WA+ +D+P LPFR+Q LGEM+ LG ++AA+S G+ L GP+ H R+L YL RLPT
Sbjct: 248 IWASFHDKPALPFRYQPLGEMLTLGVDEAAISGL---GLELAGPLAHLTRRLVYLYRLPT 304
Query: 480 DEHRLKVGVSWLTK 493
H++ V +W+T+
Sbjct: 305 LNHQIAVAFNWITQ 318
>gi|159902632|ref|YP_001549976.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. MIT 9211]
gi|159887808|gb|ABX08022.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9211]
Length = 392
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 202/432 (46%), Gaps = 80/432 (18%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ++GGGF GL TAL L +D + ++LV+ RFVF P+LYELLSGEV WEIAP
Sbjct: 11 VVLIGGGFAGLTTALALS----RDRPRCPIILVEPRPRFVFIPLLYELLSGEVRLWEIAP 66
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L+A G+ ++ VK + L V+ SG ++Y LV++ G+
Sbjct: 67 SLRNLIAGKGIIVIQEYVKKMDIDRKL-------------VITSSGKAIDYSQLVIATGS 113
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFER-------------------- 241
+P +PGA++ A F+ +ED + +S L+ + E+
Sbjct: 114 KPDFLGIPGASDHALMFNQIEDVQILKDLISRLKNCSSEKKSLVIVGAGSAGVELACKVA 173
Query: 242 --LEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
+E + + I + P G N+E L R+V++ L
Sbjct: 174 DLVENQVKIHLIESAERVLPKGQSFNQEQVELALKKRRVEIHL----------------- 216
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
++ + AD + L+ + S I + LV WT G KP+LP PP N
Sbjct: 217 ----QTSVTAVTADS------IHLKTMNEHALSSITHSGLV-WTAGVKPVLPLGMPPENL 265
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
L G+ D +L V G IFA+GD + D+ +P TAQVA QQ + A N
Sbjct: 266 L-------LGRISIDSSLRVNGSQDIFAIGDIAFNADNPWKP---TAQVAIQQGETAAKN 315
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ A RPL PF F++LGEM+ LG DA ++ G+T+ GP+ R++AYL +LP
Sbjct: 316 IVAIRERRPLEPFLFRDLGEMLSLGIGDATITGL---GMTMSGPLAFQLRRMAYLSKLPR 372
Query: 480 DEHRLKVGVSWL 491
++ +WL
Sbjct: 373 LSLGIRSASAWL 384
>gi|425439935|ref|ZP_18820247.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9717]
gi|389719735|emb|CCH96475.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9717]
Length = 420
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 136/460 (29%), Positives = 216/460 (46%), Gaps = 81/460 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKNHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T V + + ++H V LE+ +++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTKVNLKTQKASNIDLNNH-------------RVYLENEEVIDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN----------------- 238
VL++G + +PG A++ F +LED ++ + ELE +
Sbjct: 109 VLAVGVRNRWPAIPGLADYGLTFRSLEDVEKLQTAIHELETQGKSSINLAIIGGGPNGVE 168
Query: 239 -----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
+RL +KG V + I R A+ + L A+ V L L
Sbjct: 169 LACKVADRLGKKGKVHLVEKNEEILQNFPKSVRVASYRSLLAKNVSLYLN---------- 218
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
+K+ + +I + N ++ DL+LWT G++
Sbjct: 219 ---TGLKEVAANSITVFKDNTN-----------------EVIPIDLLLWTAGTQA----- 253
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
+ N L D A+G+ T +L + +P +FALGD + + S + +PATAQ A+Q A
Sbjct: 254 QDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPSK-QVIPATAQAAYQAA 311
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
N+ A I + L P+ + +LG+M+ LG+ A VS SF G+ + G + R+ Y
Sbjct: 312 SVVAKNISAVIRKKSLKPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRRFVY 368
Query: 474 LIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 513
++RLP+ H+LKV W K LL+ ++VLS++
Sbjct: 369 ILRLPSKRHQLKVFQHWAKK------ILLRLRYSQVLSNT 402
>gi|425465950|ref|ZP_18845253.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9809]
gi|389831710|emb|CCI25303.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9809]
Length = 420
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 136/460 (29%), Positives = 216/460 (46%), Gaps = 81/460 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKNHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T V + + ++H V LE+ +++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQVNLKTQKASNIDLNNH-------------RVYLENEEVIDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN----------------- 238
VL++G + +PG A++ F +LED ++ + ELE +
Sbjct: 109 VLAVGVRNRWPAIPGLADYGLTFRSLEDVEKLQTAIHELETQGKSSINLAIIGGGPNGVE 168
Query: 239 -----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
+RL +KG V + I R A+ + L A+ V L L
Sbjct: 169 LACKVADRLGKKGKVHLVEKNEEILQNFPKSVRVASYRSLLAKNVSLYLN---------- 218
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
+K+ + +I + N ++ DL+LWT G++
Sbjct: 219 ---TGLKEVAANSITVFKDNTN-----------------EVIPIDLLLWTAGTQA----- 253
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
+ N L D A+G+ T +L + +P +FALGD + + S + +PATAQ A+Q A
Sbjct: 254 QDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPSK-QVIPATAQAAYQAA 311
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
N+ A I + L P+ + +LG+M+ LG+ A VS SF G+ + G + R+ Y
Sbjct: 312 SVVAKNISAVIRKKSLKPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRRFVY 368
Query: 474 LIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 513
++RLP+ H+LKV W K LL+ ++VLS++
Sbjct: 369 ILRLPSKRHQLKVFRHWAKK------ILLRLRYSQVLSNT 402
>gi|194477113|ref|YP_002049292.1| putative NADH dehydrogenase, transport associated [Paulinella
chromatophora]
gi|171192120|gb|ACB43082.1| putative NADH dehydrogenase, transport associated [Paulinella
chromatophora]
Length = 394
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 133/424 (31%), Positives = 192/424 (45%), Gaps = 79/424 (18%)
Query: 92 LYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG 151
LYTAL L S + P +LL++ ERF+F P+LYELLSGE+ WE+APR+ LLA
Sbjct: 21 LYTALALSS----NLNYPPILLIEPKERFIFFPLLYELLSGELKIWEVAPRYTKLLAGKK 76
Query: 152 VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGA 211
+ + +D V + L V+ SG ++ LV++ G +PG
Sbjct: 77 IAWLQDTVTSIDRMKKL-------------VITASGQRQYFEQLVIATGTHLNSFGIPGV 123
Query: 212 AEFAFPFSTLEDA------CRVDRKLSELERRNF----------------ERLEEKGIVQ 249
E+A F +L D R+ +K ++E+R + L IV+
Sbjct: 124 REYAMGFHSLSDVERLQKLLRLMKKCEDIEQRLVVVGAGPAGVELACKIADLLIGTAIVE 183
Query: 250 AINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN 309
I P+ NRE A L + V L L V
Sbjct: 184 LIEQSDQPLPSARSFNREQAKLALLKKGVHLRLNTKV----------------------- 220
Query: 310 IAADKNSDKYILELQPAIKGLE--SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA 367
+ N + +L KG E +I + + +WT G+ P P + PP + +N
Sbjct: 221 --LEVNKNNIVL----LAKGSERSEEILKVNGTIWTAGTTPNYPTILPPPD------INV 268
Query: 368 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 427
RGQ L + G+ IFA+GD + + S LPATAQVAFQQA+ N+ N
Sbjct: 269 RGQLSCGPDLQLNGYQDIFAIGDVALILSSEEFSLPATAQVAFQQAELLSTNILHIRNGD 328
Query: 428 PLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVG 487
L F +++LGEM+ LG DA ++ G+TL GP AR+LAYL RLP+ H+L+V
Sbjct: 329 QLQAFNWEDLGEMISLGIGDATITGM---GLTLAGPSAFHARRLAYLTRLPSLSHQLRVA 385
Query: 488 VSWL 491
WL
Sbjct: 386 TGWL 389
>gi|166368981|ref|YP_001661254.1| type 2 NADH dehydrogenase [Microcystis aeruginosa NIES-843]
gi|166091354|dbj|BAG06062.1| type 2 NADH dehydrogenase [Microcystis aeruginosa NIES-843]
Length = 420
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 220/442 (49%), Gaps = 45/442 (10%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T V + + ++H V LE+ +++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTKVNLKTQKASNIDLNNH-------------RVYLENEEVIDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
VL++G + +PG A++ F +LED ++ + +LE + + I N
Sbjct: 109 VLAVGVRNRWPAIPGLADYGLTFRSLEDVEKLQTAIHDLETQGKSSINLAIIGGGPNGVE 168
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES----GAIPNIA 311
C ++ KV K + +L F + + RV + + + + S + +A
Sbjct: 169 LACKVADGLGKKG--KVHLVEKNEEILQNFPKSV-RVASYRSLLAKNVSLYLNTGLKEVA 225
Query: 312 ADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQA 371
A+ + K +++ DL+LWT G++ + N L D A+G+
Sbjct: 226 ANSIT---------VFKDNTNEVIPIDLLLWTAGTQA-----QDWINNL-DCQKTAQGKL 270
Query: 372 ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 431
T +L + +P +FALGD + + S + +PATAQ A+Q A N+ A I + L P
Sbjct: 271 LTRSSLQLIDYPEVFALGDLAEIYPSK-QVVPATAQAAYQAASVVAKNISAVIRKKSLKP 329
Query: 432 FRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+ + +LG+M+ LG+ A VS SF G+ + G + R+ Y++RLP+ H+LKV W
Sbjct: 330 YYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRRFVYILRLPSKRHQLKVFRHWA 386
Query: 492 TKSAIDSVALLQSTLTKVLSSS 513
K LL+ ++VLS++
Sbjct: 387 KK------ILLRLRYSQVLSNT 402
>gi|218244923|ref|YP_002370294.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 8801]
gi|218165401|gb|ACK64138.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 8801]
Length = 413
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 143/462 (30%), Positives = 226/462 (48%), Gaps = 79/462 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L W Q+ LV++++ F+F P+LYEL++GE+
Sbjct: 3 NKTPIKICILGGGFGGLYTALYLTRSGWVKSGNCQITLVERNDNFLFTPLLYELITGELQ 62
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LLA T ++ ++ VK + + V L +G + YD+L
Sbjct: 63 RWEIAPTYQKLLAKTPIKLCQNTVKDVNFKER-------------QVSLGNGDRLWYDYL 109
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE---RRNF------------- 239
VL++G + + +PG A F TL D R+ +L LE + +F
Sbjct: 110 VLAVGRQNRWVDIPGLKTHALTFRTLADVERLQAQLHLLETSPKESFRLAVIGGGPNGVE 169
Query: 240 ------ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
+R+ ++G + I + + G + AA K LS R++Q+ L
Sbjct: 170 LACKLADRVGKRGEIVLIERGNQLLKGFSEGVKIAAAKALSHRQIQVYL----------- 218
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
++VK ++ +I I DK I + V+W G+
Sbjct: 219 --NSNVKAIQADSIVLIHQDKEI-----------------ILSVNQVIWVAGT------- 252
Query: 354 EPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 411
N + LP+ N +G+ T +L + +P +FALGD + + D S + +PATAQ A+Q
Sbjct: 253 -ASRNWVKSLPIQQNEQGKILTLPSLQLVDYPEVFALGDIADI-DKSQQWIPATAQAAYQ 310
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
QA N+ AA+ + L FR+ +LG+M+ LG+ A VS SF ++G + R+L
Sbjct: 311 QASCTAKNIVAALEGKKLSAFRYFHLGDMLTLGQGAAIVS-SFC--FNIEGYLASIIRRL 367
Query: 472 AYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 513
AY+ RLPT HRL+V + L K+ + + L K+LS +
Sbjct: 368 AYIFRLPTLRHRLQVLRNLLQKALLKIRRFFRWKLIKILSQN 409
>gi|148241488|ref|YP_001226645.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp.
RCC307]
gi|147849798|emb|CAK27292.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp.
RCC307]
Length = 376
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 143/427 (33%), Positives = 201/427 (47%), Gaps = 75/427 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I I+GGGF GLYTAL L + P +LLV+ +RFVF P LYE LSGE+ W++AP
Sbjct: 5 IVIVGGGFAGLYTALELA----RRPGHPPLLLVEPRDRFVFLPFLYERLSGELPLWQMAP 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
R+ LLA G+ + +DRV + P +C V+LESG + Y LV++ GA
Sbjct: 61 RYDALLAGHGIGWQRDRVTAVEPG---------SC----QVVLESGQRLGYSQLVIATGA 107
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLS----------------ELERRNFERLEEK 245
+P +PG E A F +LED + +L EL + + L +
Sbjct: 108 KPDSFGIPGVEEHALRFHSLEDVEALQAQLPAIRNRVAIVGAGPSGVELACKLADLLRGQ 167
Query: 246 GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 305
V+ I P NR A L R V+L RC + VK + G
Sbjct: 168 ANVELIERGERCLPQAKAFNRSQAELALQQRDVRL------RC-------QCGVKAVQPG 214
Query: 306 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
L LQ A +S D V+WT G + LP L
Sbjct: 215 E--------------LTLQDAQG--QSSSLAVDAVVWTAGQRTALPG--------GTLAT 250
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425
+ RG+ + +L ++ PRIF+LGD++A+ LPATAQVAFQQ+ NL A
Sbjct: 251 DGRGRLRCNASLQLESDPRIFSLGDTAAIPHDP--ELPATAQVAFQQSQLLARNLLLARE 308
Query: 426 DRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLK 485
++PL F++++LGEM+ LG DA ++ G+TL G + R+ YL RLP L+
Sbjct: 309 NQPLEEFKWKDLGEMLSLGVGDATLTGM---GLTLAGSSAYQLRRWTYLTRLPGCRLPLQ 365
Query: 486 VGVSWLT 492
V WL+
Sbjct: 366 VAAGWLS 372
>gi|425472700|ref|ZP_18851541.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9701]
gi|389881226|emb|CCI38238.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9701]
Length = 410
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 136/458 (29%), Positives = 214/458 (46%), Gaps = 81/458 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T V + + ++H V LE+ +++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQVNLKTQKASNIDLNNH-------------QVYLENEEVIDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN----------------- 238
VL++G + +PG A++ F +LED R+ + +LE +
Sbjct: 109 VLAVGVRNRWPAIPGLADYGLTFRSLEDVERLQTAIHDLETQGKSSINLAIIGGGPNGVE 168
Query: 239 -----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
+RL +KG V + I R A+ + L A+ V L L
Sbjct: 169 LACKVADRLGKKGKVHLVERNEEILQNFPKSVRVASYRSLLAKNVSLYLN---------- 218
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
+K+ + +I +KN ++ DL+LWT G++
Sbjct: 219 ---TGLKEVAANSITVFKDNKN-----------------EVIPIDLLLWTAGTE-----A 253
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
+ N L D A+G+ T +L + +P +FALGD + + S + +PATAQ A+Q A
Sbjct: 254 QDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDIAEIYPSK-QVIPATAQAAYQAA 311
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
N+ A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+ Y
Sbjct: 312 SVVAKNISAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRRFVY 368
Query: 474 LIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLS 511
++RLP H+LKV W K LL+ ++VLS
Sbjct: 369 ILRLPGKRHQLKVFQHWAKK------ILLRLRYSQVLS 400
>gi|257057948|ref|YP_003135836.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 8802]
gi|256588114|gb|ACU99000.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 8802]
Length = 413
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 142/462 (30%), Positives = 226/462 (48%), Gaps = 79/462 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L W Q+ LV++++ F+F P+LYEL++GE+
Sbjct: 3 NKTPIKICILGGGFGGLYTALYLTRSGWVKSGNCQITLVERNDNFLFTPLLYELITGELQ 62
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LLA T ++ ++ VK + + V L +G + YD+L
Sbjct: 63 RWEIAPTYQKLLAKTPIKLCQNTVKDVNFKER-------------QVSLGNGDRLWYDYL 109
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE---RRNF------------- 239
VL++G + + +PG A F TL D R+ +L LE + +F
Sbjct: 110 VLAVGTQNRWVDIPGLKTHALTFRTLADVERLQAQLHLLETSPKESFRLAVIGGGPNGVE 169
Query: 240 ------ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
+R+ ++G + I + + G + AA K LS R++Q+ L
Sbjct: 170 LACKLADRVGKRGEIVLIERGNQLLKGFSEGVKIAAAKALSHRQIQVYL----------- 218
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
++VK ++ +I I DK I + V+W G+
Sbjct: 219 --NSNVKAIQADSIVLIHQDKEI-----------------ILSVNQVIWVAGT------- 252
Query: 354 EPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 411
N + LP+ N +G+ T +L + +P +FALGD + + + S + +PATAQ A+Q
Sbjct: 253 -ASRNWVKSLPIQQNEQGKILTLPSLQLIDYPEVFALGDIADI-NKSQQWIPATAQAAYQ 310
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
QA N+ AA+ + L FR+ +LG+M+ LG+ A VS SF ++G + R+L
Sbjct: 311 QASCTAKNIVAALEGKKLSAFRYFHLGDMLTLGQGAAIVS-SFC--FNIEGYLASIIRRL 367
Query: 472 AYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 513
AY+ RLPT HRL+V + L K+ + + L K+LS +
Sbjct: 368 AYIFRLPTLRHRLQVLRNLLQKALLKIRRFFRWKLIKILSQN 409
>gi|254432218|ref|ZP_05045921.1| NADH dehydrogenase protein, putative [Cyanobium sp. PCC 7001]
gi|197626671|gb|EDY39230.1| NADH dehydrogenase protein, putative [Cyanobium sp. PCC 7001]
Length = 406
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 147/425 (34%), Positives = 200/425 (47%), Gaps = 79/425 (18%)
Query: 89 FGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLA 148
F GLYTAL L + + P VLL++ ++RF+F P+LYELLSGE+ WEIAPR+ LLA
Sbjct: 34 FAGLYTALALA----EQRQPPPVLLIEPNDRFLFLPLLYELLSGELRRWEIAPRYDALLA 89
Query: 149 NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVV 208
G+ + +DRV H+ T GG L + LVLS G +
Sbjct: 90 GKGIAWLRDRVT------HIDATARSVSTEGGRTL-------GFSQLVLSTGGSTNSFGI 136
Query: 209 PGAAEFAFPFSTLEDACRVDRKLSELERRNF----------------------ERLEEKG 246
PG E A F TL D R+ + + EL + + L+
Sbjct: 137 PGVREHALEFRTLADVERLHQLVGELRSQQLPLQRLAIVGAGPSGVELACKLADLLQGAA 196
Query: 247 IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA 306
+V+ I P NR+ AL+ L AR V+L R RV E
Sbjct: 197 LVELIEQGPEALPQARAFNRDQALRALQARDVRL------RTRTRVQE------------ 238
Query: 307 IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 366
+ AD+ L+LQ G ES A V+WT G P + P ++
Sbjct: 239 ---VGADQ------LDLQ-GPGGAESLPVRA--VIWTAGISFQPPAITP------EVRSE 280
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
RG+ + +L ++G +FA GD +AL G PLPATAQVAFQQAD NL +
Sbjct: 281 GRGRLSCEPSLRLRGFSHLFAAGDIAALESEDG-PLPATAQVAFQQADCLAANLLRSEAG 339
Query: 427 RPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 486
PL PFRF++LGEM+ LG +A++ G+TL G + R+LAYL RLP H+L+V
Sbjct: 340 EPLEPFRFKDLGEMVSLGIGEASLVGG---GLTLAGAAAYQLRRLAYLTRLPRRTHQLRV 396
Query: 487 GVSWL 491
WL
Sbjct: 397 AAGWL 401
>gi|425453794|ref|ZP_18833547.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9807]
gi|389800267|emb|CCI20360.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9807]
Length = 420
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 135/460 (29%), Positives = 218/460 (47%), Gaps = 81/460 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T V + + + ++H V LE+ I++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQVNLKPQKARNIDLNNH-------------QVYLENEEILDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN----------------- 238
VL++G + +PG A++ F +LED ++ + +LE +
Sbjct: 109 VLAVGVRNRWPAIPGLADYGLTFRSLEDVEKLQTAIHDLETQGKSSIDLAIIGGGPNGVE 168
Query: 239 -----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
+RL +KG V + I R A+ + L A+ V L L
Sbjct: 169 LACKVADRLGKKGKVHLVERNEEILQNFPKSVRIASCRSLLAKNVSLYLN---------- 218
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
+K+ + ++ +KN ++ DL+LWT G++
Sbjct: 219 ---TGLKEVAANSMTVFKDNKN-----------------EVIPIDLLLWTAGTQ-----A 253
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
+ N L D A+G+ T +L + +P +FALGD + + + + +PATAQ A+Q A
Sbjct: 254 QDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPNK-QVIPATAQAAYQAA 311
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
NL A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+ Y
Sbjct: 312 SVVAKNLSAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRRFVY 368
Query: 474 LIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 513
++RLP+ H+LKV W K LL+ ++VLS++
Sbjct: 369 ILRLPSKRHQLKVFQHWAKK------ILLRLRYSQVLSNT 402
>gi|317968018|ref|ZP_07969408.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp.
CB0205]
Length = 383
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 145/433 (33%), Positives = 202/433 (46%), Gaps = 76/433 (17%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF 143
++GGGFGGL TAL+L + + P VLL++ E F+F P+LYELLSGE+ WEIAPR+
Sbjct: 2 VIGGGFGGLNTALQLAA----SGEHPSVLLLEPREHFLFLPLLYELLSGELKRWEIAPRY 57
Query: 144 ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203
+LLA +GV + ++R + S T+ + G + Y V++ G +
Sbjct: 58 RELLAGSGVVWIQERASRIDRSRR-------------TITTDRGRELPYSQAVIASGGQL 104
Query: 204 KLDVVPGAAEFAFPFSTLEDA-------CRVDRKLSELERRNF---------------ER 241
+ +PG E A F LED R+ K S L+R +
Sbjct: 105 ETYGIPGVREHALGFRDLEDVEQIQGWIARLKTKQSPLQRIGIVGAGASGVELACKLADL 164
Query: 242 LEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQ 301
LE I++ + + P NRE A K L R ++L L V ASV
Sbjct: 165 LEGSAILELVEQGPELLPIAKAFNREQARKALQQRDIRLRLNTRV----------ASV-- 212
Query: 302 PESGAIPNIAADKNSDKYILELQPAIKGLES-QIFEADLVLWTVGSKPLLPHVEPPNNRL 360
D L+LQ G S + D V+WT G +P ++PP
Sbjct: 213 ---------------DATGLQLQRLGDGTNSTEALRCDGVIWTAGLAASVPELQPP---- 253
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 420
LPL+ RG+ + +L V+G +F LGD++A DS G PA AQVA+QQA NL
Sbjct: 254 --LPLDPRGRLKCAPSLQVEGSEDLFVLGDAAACPDSCGALYPANAQVAYQQASCIARNL 311
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 480
PL F + +LGEMM LG A+++ GVTL GP R+LAYL R+P
Sbjct: 312 QRLRLGAPLEDFAWNDLGEMMGLGVGQASLTGM---GVTLAGPAAFQLRRLAYLARMPGL 368
Query: 481 EHRLKVGVSWLTK 493
+LKV WL
Sbjct: 369 PQQLKVAGGWLAN 381
>gi|307150141|ref|YP_003885525.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
gi|306980369|gb|ADN12250.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
Length = 411
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 141/457 (30%), Positives = 216/457 (47%), Gaps = 75/457 (16%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K +IC++GGGFGGLYTAL L Q++LV+ + F+F P+LYEL++GE+ W
Sbjct: 3 KCYKICLIGGGFGGLYTALYLSRFRVFKAGLCQIILVEPKDHFLFTPLLYELITGELQRW 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
EIAP + LLA T +Q+ + VK + + V LE+ + YD+LVL
Sbjct: 63 EIAPSYQKLLAFTQIQWCQQAVKSVDFKTRV-------------VQLENEQQLSYDYLVL 109
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS----------------------ELE 235
+ G++ + VPG + A F TLED R+ ++ EL
Sbjct: 110 AAGSQNRFLDVPGLSTHALTFRTLEDVERLQGEIHLLEASQKPLIRATVIGGGPNGVELA 169
Query: 236 RRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 295
+ +RL ++G V I I + G R+AA + L ++V++ L V I
Sbjct: 170 CKLADRLGKRGQVSLIERGENILKGFSQGVRKAAWRSLVLKRVKVELNTTVEAI------ 223
Query: 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
A ++ KN K L + DLV+W G++
Sbjct: 224 ----------AADSLTLLKNDQKVQL--------------QRDLVIWAAGTQV------S 253
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
R D NA+G+ TL + +P +FALGD + R+ + PATAQ AFQQA
Sbjct: 254 EWVRHLDCQKNAQGKLLIYPTLQLIDYPEVFALGDLADSREGK-KSHPATAQAAFQQASC 312
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
N+ A I ++PL F + +LG+M+ LGR A +S SF+ + ++G + R+L Y++
Sbjct: 313 LAKNIAAMIENKPLKAFHYHHLGDMLTLGRKSAIIS-SFL--LNVNGRLADILRRLVYIL 369
Query: 476 RLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSS 512
RLPT HR +V SW K + + T++L
Sbjct: 370 RLPTMRHRRQVLQSWFFKLTVKCKQFFRWHFTRILEQ 406
>gi|425446930|ref|ZP_18826926.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9443]
gi|389732622|emb|CCI03469.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9443]
Length = 420
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 135/460 (29%), Positives = 216/460 (46%), Gaps = 81/460 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T V + + ++H V LE+ I++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQVNLKPQKASNIDLNNH-------------QVYLENEEILDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN----------------- 238
VL++G + + G A++ F +LED ++ + +LE +
Sbjct: 109 VLAVGVRNRWPAILGLADYGLTFRSLEDVEKLQTAIHDLETQGKSSINLAIIGGGPNGVE 168
Query: 239 -----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
+RL +KG V + I R A+ + L A+ V L L
Sbjct: 169 LACKLADRLGKKGKVHLVERNEEILQNFPKSVRIASYRSLLAKNVSLYLN---------- 218
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
+K+ S ++ +KN ++ DL+LWT G++
Sbjct: 219 ---TGLKEVMSNSMTVFKDNKN-----------------EVIPIDLLLWTAGTE-----A 253
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
+ N L D A+G+ T +L + +P +FALGD + + S + +PATAQ A+Q A
Sbjct: 254 QDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPSK-QVIPATAQAAYQAA 311
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
N+ A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+ Y
Sbjct: 312 SVVAKNISAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRRFVY 368
Query: 474 LIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 513
++RLP+ H+LKV W K LL+ ++VLS++
Sbjct: 369 ILRLPSQRHQLKVFQHWAKK------ILLRLRYSQVLSNT 402
>gi|33863892|ref|NP_895452.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. MIT 9313]
gi|33635475|emb|CAE21800.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9313]
Length = 389
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 185/406 (45%), Gaps = 74/406 (18%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+P ++L++ +RFVF P+LYELLSGE+ AWE+AP + LL+ G+ +DRV +
Sbjct: 33 RPPIVLIEPRQRFVFLPLLYELLSGELQAWEVAPPYHSLLSQRGIALLEDRVDSI----- 87
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
T TV SGL + Y LVLS G+ P +PG + A F L D +
Sbjct: 88 --------DTKAKTVTTSSGLKLNYAQLVLSTGSTPTDFDIPGVRKHALMFHHLNDVDVL 139
Query: 228 DRKLSELERRNFER----------------------LEEKGIVQAINVETTICPTGTPGN 265
+++ EL+ R R LE + I + + P+ N
Sbjct: 140 RQRIKELQLRRNPRQDLVIVGAGPTGVELACKLADLLEGAAQLHLIELGERVLPSAKAFN 199
Query: 266 REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 325
+E A + LS R V + L VR I + E KQ E P
Sbjct: 200 QEQAERALSERGVHVHLLTQVRAI-STDQVELLSKQKE---------------------P 237
Query: 326 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 385
AI S I + LV WT G++P++P + P D L + D L V G +
Sbjct: 238 AIS---SAITHSGLV-WTAGTRPVIPALSP------DFVLT-EARLPIDSCLQVIGLSDV 286
Query: 386 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
LGD++ +D S P TAQVA QQ + A N+ A PL PF F++ GEM+ LG
Sbjct: 287 LGLGDATYNKDHS---WPPTAQVALQQGELAARNVMALRTSSPLQPFEFKDFGEMLSLGV 343
Query: 446 NDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+A+++ G TL GP+ R+ AYL +LP L+ G +WL
Sbjct: 344 GEASITGM---GFTLAGPLAFQIRRGAYLTKLPGLSLGLRSGGAWL 386
>gi|425436758|ref|ZP_18817191.1| Genome sequencing data, contig C322 [Microcystis aeruginosa PCC
9432]
gi|389678480|emb|CCH92668.1| Genome sequencing data, contig C322 [Microcystis aeruginosa PCC
9432]
Length = 420
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 133/460 (28%), Positives = 215/460 (46%), Gaps = 81/460 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T + + + ++H V LE+ I++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQINLKTQKASNIDLNNH-------------QVYLENEEILDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN----------------- 238
VL++G + + G A++ F +LED R+ + +LE +
Sbjct: 109 VLAVGVRNRWPAILGLADYGLTFRSLEDVERLQTAIHDLETQGKSSINLAIIGGGPNGVE 168
Query: 239 -----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
+RL +KG V + I R A+ + L A+ V L L
Sbjct: 169 LACKVADRLGKKGKVHLVERNEEILQNFPKSVRIASCRSLLAKNVNLYL----------- 217
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
+ + +AA+ + K ++ DL+LWT G++
Sbjct: 218 ----------NTGLKEVAANSMT---------VFKDNTNEFIPIDLLLWTAGTQ-----A 253
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
+ N L D A+G+ T +L + +P +FALGD + + + + +PATAQ A+Q A
Sbjct: 254 QDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPNK-QVIPATAQAAYQAA 311
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
N+ A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+ Y
Sbjct: 312 SLLAKNISAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRRFVY 368
Query: 474 LIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 513
++RLP+ H+LKV W K LL+ ++VLS++
Sbjct: 369 ILRLPSQRHQLKVFQHWAKK------ILLRLRYSQVLSNT 402
>gi|440756870|ref|ZP_20936070.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Microcystis aeruginosa TAIHU98]
gi|440172899|gb|ELP52383.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Microcystis aeruginosa TAIHU98]
Length = 420
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 133/460 (28%), Positives = 215/460 (46%), Gaps = 81/460 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T + + + ++H V LE+ I++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQINLKTQKASNIDLNNH-------------QVYLENEEILDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN----------------- 238
VL++G + + G A++ F +LED R+ + +LE +
Sbjct: 109 VLAVGVRNRWPAILGLADYGLTFRSLEDVERLQTAIHDLETQGKSSINLAIIGGGPNGVE 168
Query: 239 -----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
+RL +KG V + I R A+ + L A+ V L L
Sbjct: 169 LACKVADRLGKKGKVHLVERNEEILQNFPKSVRIASCRSLLAKNVSLYL----------- 217
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
+ + +AA+ + K ++ DL+LWT G++
Sbjct: 218 ----------NTGLKEVAANSMT---------VFKDNTNEFIPIDLLLWTAGTQ-----A 253
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
+ N L D A+G+ T +L + +P +FALGD + + + + +PATAQ A+Q A
Sbjct: 254 QDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPNK-QVIPATAQAAYQAA 311
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
N+ A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+ Y
Sbjct: 312 SLLAKNISAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRRFVY 368
Query: 474 LIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSSS 513
++RLP+ H+LKV W K LL+ ++VLS++
Sbjct: 369 ILRLPSQRHQLKVFQHWAKK------ILLRFRYSQVLSNT 402
>gi|384253350|gb|EIE26825.1| FAD/NAD(P)-binding domain-containing protein [Coccomyxa
subellipsoidea C-169]
Length = 406
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 151/307 (49%), Gaps = 38/307 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PR+CILGGGFGGLYTALRL+SL+W KPQV L+D+S RFVFKP+LYELL+G E+
Sbjct: 4 PRVCILGGGFGGLYTALRLDSLLWPQGSKPQVTLIDRSSRFVFKPLLYELLNGGATQDEV 63
Query: 140 APRFADLLANTGVQF---FKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
AP F+ LLA + F F ++ + GP A GG V+LE+G VEYDWLV
Sbjct: 64 APPFSQLLAPYSINFIQVFTVPLQTASLRQAVKARGPGA---GGRVMLENGSAVEYDWLV 120
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF----------------- 239
L+LG++ + G E PF+T DA RV +L LE+
Sbjct: 121 LALGSDSVFFGIEGVKELCLPFNTYSDAMRVSVRLRMLEQLPGVADVVVVGGGYCGIELA 180
Query: 240 ----ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV------RCI 289
ER++ G V I I + G REAA + L + + ++ F+ +
Sbjct: 181 TTVAERMQGSGRVHLITGGEDILESSPLGQREAARRTLQDQGIDIIANAFLPFPANNKGA 240
Query: 290 RRVGEFEASVKQPESGAIPNIAA-DKNSDKYILELQPAIKGLESQIFEADLVLW----TV 344
R V P A+ +++ D + L P + + +AD V W ++
Sbjct: 241 VRTDATLRVVDHPRVFALGDVSGCDCEASTSAPTLAPTAQAPQVAFQQADYVAWNLWASI 300
Query: 345 GSKPLLP 351
+PLLP
Sbjct: 301 NRRPLLP 307
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 96/166 (57%), Gaps = 17/166 (10%)
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA------QVAFQ 411
N P N +G TD TL V HPR+FALGD S + P A QVAFQ
Sbjct: 228 NAFLPFPANNKGAVRTDATLRVVDHPRVFALGDVSGCDCEASTSAPTLAPTAQAPQVAFQ 287
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS------PSFVE-----GVTL 460
QAD+ WNLWA+IN RPLLPF++Q+LGEMM LGR AV+ P + GVT+
Sbjct: 288 QADYVAWNLWASINRRPLLPFKYQHLGEMMSLGRARGAVTLPVPLAPPLRQALNGGGVTV 347
Query: 461 DGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQSTL 506
+GP+ + R+ AYL R PT E R+ VG SWL ++A + +L Q L
Sbjct: 348 EGPLAGAMRRAAYLYRQPTAEQRMAVGASWLQQAATEGASLAQRML 393
>gi|284929139|ref|YP_003421661.1| NADH dehydrogenase, FAD-containing subunit [cyanobacterium UCYN-A]
gi|284809598|gb|ADB95303.1| NADH dehydrogenase, FAD-containing subunit [cyanobacterium UCYN-A]
Length = 338
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/372 (30%), Positives = 179/372 (48%), Gaps = 52/372 (13%)
Query: 134 VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
++ EI F LLANT + F + V + + + LE + YD
Sbjct: 1 MEEQEITFPFKKLLANTNISFQQGLVTEIDIKKQI-------------IQLEGKSNLYYD 47
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINV 253
LVL+ G GA E A PF T+ DA + + L LE+R E++ + +
Sbjct: 48 KLVLATGVSSSFGSCDGAQENAIPFRTVNDAYLIKKTLLSLEKRQTEKIRIAIVGGGSSG 107
Query: 254 ETTICPTGTPGNREAALKVLSARKVQL-VLGYFVRCI-------RRV-GEFEASVKQPES 304
C ++A ++++ K L YF++ + R + + E V Q S
Sbjct: 108 VEIACKLSDLLQKKARIRLIEKNKNILKSYSYFIQNVANKELKSRHIFVDLETKVTQVSS 167
Query: 305 GAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 364
++ +KN +K I DLV+WT+G+KPL ++ LP
Sbjct: 168 NSLS--LLNKNRNKTI---------------PTDLVIWTIGTKPL--------EIINKLP 202
Query: 365 L--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
L N+RG + L + HP IFA+GD + +++ L TAQ AFQQAD+ WN+WA
Sbjct: 203 LLKNSRGSLIINSKLQIINHPEIFAIGDIAEYQENLENKLCPTAQTAFQQADYCAWNIWA 262
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 482
+I + LL F +Q LGEM++LG +AAVS G+ ++G + + AR+L YL RLPT +
Sbjct: 263 SIVNNSLLSFSYQPLGEMIVLGNKNAAVSSL---GIQIEGQLAYIARRLIYLHRLPTQKK 319
Query: 483 RLKVGVSWLTKS 494
+L +G +++ KS
Sbjct: 320 QLIIGTNFILKS 331
>gi|17232703|ref|NP_489251.1| hypothetical protein alr5211 [Nostoc sp. PCC 7120]
gi|17134350|dbj|BAB76910.1| alr5211 [Nostoc sp. PCC 7120]
Length = 470
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 199/432 (46%), Gaps = 59/432 (13%)
Query: 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
ILGGGF GL+TAL L Q + ++L++Q +RF FKP+LYELLSGE+ + ++ PR
Sbjct: 9 VILGGGFAGLFTALHLS----QQNYSYPIILIEQRDRFSFKPLLYELLSGELHSQQVYPR 64
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
+ +LLA + V+F +D V+ + H V SG Y L+L+LG++
Sbjct: 65 YQELLAGSKVKFVQDTVQSI-------------DIHQQRVDTVSGQAFHYSNLILALGSK 111
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGT 262
PGAAE+A PF++ E A + + L R + + + + T+ G
Sbjct: 112 TTYFATPGAAEYAMPFTSGEQAIALRQHL----RHKLYQAIQTSDSERRRLLLTVAIIGA 167
Query: 263 -PGNREAALKVL------------SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN 309
P E A + ++ +VL R I + G+ + ++ A+ N
Sbjct: 168 GPSGIELACTLADLLPIWYDELGGDGSEIHVVLVNRSREILK-GDVNSHLRCTVERAMKN 226
Query: 310 --IAADKNSDKYILELQPAIKGLES------QIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
I D D + ++ P G+E Q+ +A + WT G+ P+ L
Sbjct: 227 RLIPVDFLFDAAVTKITP--DGVECRRHGQIQMLQAGTIAWTAGTA--------PHPLLM 276
Query: 362 DLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 420
+LP++ RG+ TL + P IFA GD + S P P TAQVA+QQ NL
Sbjct: 277 ELPVSQNRGRLLVKPTLQLSNFPEIFAAGDCAT---DSDHPQPPTAQVAYQQGIAIAQNL 333
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 480
++P +P + Q G +M LG N+ + V + G GH R+ YL LP
Sbjct: 334 QRISQNKPTIPVQVQLRGTLMKLGLNEGVA--NLFNKVQIKGQAGHLIREGTYLQLLPNS 391
Query: 481 EHRLKVGVSWLT 492
H LKV WLT
Sbjct: 392 AHNLKVTTEWLT 403
>gi|347756744|ref|YP_004864307.1| NADH dehydrogenase, FAD-containing subunit [Candidatus
Chloracidobacterium thermophilum B]
gi|347589261|gb|AEP13790.1| NADH dehydrogenase, FAD-containing subunit [Candidatus
Chloracidobacterium thermophilum B]
Length = 441
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 132/437 (30%), Positives = 211/437 (48%), Gaps = 58/437 (13%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LGGGF GL TA +L + W + ++ LVD+++RF+F PM YE+L+GEV+ WEIAP
Sbjct: 13 ILVLGGGFAGLNTAFQLSNYPWT--RPVRITLVDRNDRFLFTPMAYEILTGEVEVWEIAP 70
Query: 142 RFADLLANTGVQFFK---DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D+L N V+F + +R+ L +G TH YD+LVL+
Sbjct: 71 LYRDILGNRPVRFVQGVIERIDLEKRQVQVG-----DTTH------------RYDYLVLA 113
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG P VPGA +++ PF L + L+ R + + K V+ + +
Sbjct: 114 LGGRPNFRQVPGADKYSQPFYDLAHVQAYQKHLAHTLDRARQTTDPK--VRKALLNFLVV 171
Query: 259 PTGTPG-----------NREAALKVLSARKVQL-VLGYFVRCIRRVGE-FEASVKQPESG 305
GT G + ++ L +++++ ++ R +R V E
Sbjct: 172 GAGTCGVEVSCKLADYLDAQSRAYGLDRQEMEIHLIDRNERILRGVAHRLEPIALDALRR 231
Query: 306 AIPNIAADKNSDKYI---LELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNRL 360
N+ D K +E++ +G Q+ A V WT G PLL
Sbjct: 232 RRVNLVLDWGVTKVTPEGVEIRCDKQGTLKQVAAAT-VTWTGGIEMHPLLTA-------- 282
Query: 361 HDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
LP+ +A G+ + L V G ++ALGD++ G+ LPATAQVA +Q++ A W
Sbjct: 283 --LPVEKDAHGRIRVTQQLEVPGQRGVYALGDATHFPTDDGQGLPATAQVAVRQSEIAAW 340
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
N+ A I LP+ + LGEM+ LG +A V +F G+ + G +G + R+ YL +LP
Sbjct: 341 NIRADIEGWVKLPYIYIGLGEMLTLGIGEAGVD-AF--GMCIGGTLGAAMRRAVYLTKLP 397
Query: 479 TDEHRLKVGVSWLTKSA 495
T +++VG +W+ + A
Sbjct: 398 TMGLKVRVGGTWMGEIA 414
>gi|148240511|ref|YP_001225898.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. WH
7803]
gi|147849050|emb|CAK24601.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. WH
7803]
Length = 391
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 196/446 (43%), Gaps = 85/446 (19%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P+ ++ I ++GGGF GL +AL+ S V +P ++L++ +F+F P+LYELLSGE+
Sbjct: 5 PNPQEQPILVVGGGFAGL-SALQAFSRV---HPRPPLVLIEPRSKFLFVPLLYELLSGEL 60
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
WE+AP + LL GV +D V+ + DH + T+GG + Y
Sbjct: 61 QGWEVAPDYGQLLQARGVSHVQDSVRSINLEDH------VVTTNGGQRM-------PYSQ 107
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN---------------- 238
LVL+ GA P+ +PG E A F LED + +L EL R
Sbjct: 108 LVLATGAVPEDFGIPGVREHALRFHALEDIPPLQARLRELRHRPSGTSTLVIVGAGATGV 167
Query: 239 ------FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 292
+ L+ V + I NRE A + L R G V RV
Sbjct: 168 ELACKLVDLLDGAARVHLVEQGEQILSRSRAFNREQAERALKQR------GVTVHLKTRV 221
Query: 293 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA-DLVLWTVGSKPLLP 351
A+ Q G+E ++ +A D ++WT GS+P +P
Sbjct: 222 LNVSANAVQ-------------------------WSGVEGEVEQAHDGLIWTAGSRPNIP 256
Query: 352 HVEPPNNRLHD-LPLNARGQAETDETLCVKGHPRIFALGD--SSALRDSSGRPLPATAQV 408
+ P H LP+ DETL + G P + LGD S D P P +AQV
Sbjct: 257 ELTPSIAPHHKRLPV--------DETLRLIGQPDVLVLGDIASQPTIDEGQTPWPLSAQV 308
Query: 409 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 468
A QQ A +L + PF F++LGEM+ LG DA ++ GVTL GP+
Sbjct: 309 AIQQGQAAARSLQSHRQGNRSDPFVFKDLGEMLSLGIGDATLTGM---GVTLAGPLAFQM 365
Query: 469 RKLAYLIRLPTDEHRLKVGVSWLTKS 494
R+LAYL R+P L+ +WL S
Sbjct: 366 RRLAYLTRMPGLSLGLRSAGAWLFSS 391
>gi|425461659|ref|ZP_18841133.1| Genome sequencing data, contig C322 [Microcystis aeruginosa PCC
9808]
gi|389825444|emb|CCI24764.1| Genome sequencing data, contig C322 [Microcystis aeruginosa PCC
9808]
Length = 420
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 204/440 (46%), Gaps = 75/440 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALNLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T + + + ++H V LE+ I++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQINLKTQKASNIDLNNH-------------QVYLENEEILDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN----------------- 238
VL++G + G A++ F +LED ++ + +LE +
Sbjct: 109 VLAVGVRNCWPDILGLADYGLTFRSLEDVEKLQTAIHDLETQGKSSINLAIIGGGPNGVE 168
Query: 239 -----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
+RL +KG V + I R A+ + L A+ V L L +R
Sbjct: 169 LACKVADRLGKKGKVHLVERNEEILQNFPKSVRVASYRSLLAKNVSLYLNTGLR------ 222
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
E A N++++I DL+LWT G++
Sbjct: 223 ---------EVAANSITVFKDNTNEFI---------------PIDLLLWTAGTQ-----A 253
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
+ N L D A+G+ T +L + +P +FALGD + + + + +PATAQ A+Q A
Sbjct: 254 QDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPNK-QVIPATAQAAYQAA 311
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
N+ A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+ Y
Sbjct: 312 SLLAKNISAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRRFVY 368
Query: 474 LIRLPTDEHRLKVGVSWLTK 493
++RLP+ H+LKV W K
Sbjct: 369 ILRLPSQRHQLKVFQHWAKK 388
>gi|124021971|ref|YP_001016278.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. MIT 9303]
gi|123962257|gb|ABM77013.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9303]
Length = 389
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 126/406 (31%), Positives = 186/406 (45%), Gaps = 74/406 (18%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+P ++L++ +RFVF P+LYELLSGE+ AWE+AP + LL+ G+ +DRV+ +
Sbjct: 33 RPPIVLIEPRQRFVFLPLLYELLSGELQAWEVAPPYHSLLSQRGIALLEDRVESI----- 87
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
T TV SGL + Y LV+S G+ P +PG + A F L D +
Sbjct: 88 --------DTKAKTVTTSSGLKLNYAQLVISTGSAPTDFDIPGVRKHALMFHRLNDVEVL 139
Query: 228 DRKLSELERRNFER----------------------LEEKGIVQAINVETTICPTGTPGN 265
+++ EL+ R R L+ + I + + P+ N
Sbjct: 140 RQRIKELQLRRNPRQDLVIVGAGPTGVELACKLADLLDGAAELHLIELGERVLPSAKAFN 199
Query: 266 REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 325
+E A + LS R V + L VR I + E K E P
Sbjct: 200 QEQAERALSKRGVHVHLLTQVRSI-STDQVELLSKHKE---------------------P 237
Query: 326 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 385
AI S I + LV WT G++P++P + P D L + D L V G +
Sbjct: 238 AIS---SAITHSGLV-WTAGTRPVIPALNP------DFVLT-EARLPIDSCLQVIGLSDV 286
Query: 386 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
LGD++ +D S P+TAQVA QQ + A N+ A PL PF F++ GEM+ LG
Sbjct: 287 LGLGDATYNKDHS---WPSTAQVALQQGEIAARNVMALRASSPLQPFEFKDFGEMLSLGV 343
Query: 446 NDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+A+++ G TL GP+ R+ AYL +LP L+ G +WL
Sbjct: 344 GEASLTGM---GFTLAGPLAFQIRRGAYLTKLPGLSLGLRSGGAWL 386
>gi|75908982|ref|YP_323278.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anabaena variabilis ATCC 29413]
gi|75702707|gb|ABA22383.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Anabaena variabilis ATCC 29413]
Length = 470
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 130/431 (30%), Positives = 197/431 (45%), Gaps = 57/431 (13%)
Query: 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
ILG GF GL+TAL L Q + ++L++Q +RF FKP+LYELLSGE+ + ++ PR
Sbjct: 9 VILGAGFAGLFTALHLS----QQNYSYPIILIEQRDRFSFKPLLYELLSGELHSKQVYPR 64
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
+ +LLA + V+F +D V+ + H V SG Y LVL+LG++
Sbjct: 65 YQELLAGSKVKFVQDTVQSI-------------DIHQQRVDTVSGQAFHYSNLVLALGSK 111
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGT 262
PGAAE+A PF++ E A + + L R+ ++ ++ + T
Sbjct: 112 TTYFATPGAAEYAMPFTSGEQAIALRQ---HLRRKLYQAIQTPDSEHRRLLLTVAIIGAG 168
Query: 263 PGNREAALKVL------------SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN- 309
P E A + ++ +VL R I + G+ + ++ A+ N
Sbjct: 169 PAGIELACTLADLLPIWYDELGGDGSEIHVVLVNRSREILK-GDVNSHLRCTVERAMKNR 227
Query: 310 -IAADKNSDKYILELQPAIKGLES------QIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
I D D + ++ +G+E Q+ A + WT G+ PN L +
Sbjct: 228 LIPVDFLFDAAVTKI--TSEGVEYRRQEQIQMLPAGTIAWTAGTA--------PNPLLME 277
Query: 363 LPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 421
LP++ RG+ TL + P IFA GD + S P P TAQVA+QQ NL
Sbjct: 278 LPVSQNRGRLLVKPTLQLSNFPEIFAAGDCAM---DSDHPQPPTAQVAYQQGIAIAQNLQ 334
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
++P +P + Q G +M LG N+ + V + G GH R+ YL LP
Sbjct: 335 RISQNKPTVPVQVQLRGTLMKLGLNEGVA--NLFNKVQIKGQAGHLIREGTYLQLLPNST 392
Query: 482 HRLKVGVSWLT 492
H LKV WLT
Sbjct: 393 HNLKVTTEWLT 403
>gi|425453145|ref|ZP_18832959.1| Genome sequencing data, contig C322 [Microcystis aeruginosa PCC
7941]
gi|389764643|emb|CCI09207.1| Genome sequencing data, contig C322 [Microcystis aeruginosa PCC
7941]
Length = 420
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 204/440 (46%), Gaps = 75/440 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALDLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T + + + ++H V LE+ I++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQINLKTQKASNIDLNNH-------------QVYLENEEILDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN----------------- 238
VL++G + G A++ F +LED ++ + +LE +
Sbjct: 109 VLAVGVRNCWPDILGLADYGLTFRSLEDVEKLQTAIHDLETQGKYSINLAIIGGGPNGVE 168
Query: 239 -----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
+RL +KG V + I R A+ + L A+ V L L +R
Sbjct: 169 LACKVADRLGKKGKVHLVERNEEILQNFPKSVRIASCRSLLAKNVSLYLNTGLR------ 222
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
E A N++++I DL+LWT G++
Sbjct: 223 ---------EVAANSMTVFKDNTNEFI---------------PIDLLLWTAGTQ-----A 253
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
+ N L D A+G+ T +L + +P +FALGD + + + + +PATAQ A+Q A
Sbjct: 254 QDWINNL-DCQKTAQGKLLTRSSLQLIDYPEVFALGDLAEIYPNK-QVIPATAQAAYQAA 311
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
N+ A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+ Y
Sbjct: 312 SLLAKNISAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRRFVY 368
Query: 474 LIRLPTDEHRLKVGVSWLTK 493
++RLP+ H+LKV W K
Sbjct: 369 ILRLPSQRHQLKVFQHWAKK 388
>gi|428208267|ref|YP_007092620.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chroococcidiopsis thermalis PCC 7203]
gi|428010188|gb|AFY88751.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chroococcidiopsis thermalis PCC 7203]
Length = 417
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 204/438 (46%), Gaps = 62/438 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R I+G GF GL+TAL L L + K Q++L+D+SERFVFKP+L+E L+G++DA ++
Sbjct: 7 RTAIVGSGFTGLFTALYLSHLGY----KGQIILIDRSERFVFKPLLFEFLNGQMDANQVW 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P++ +LL +GV F +D V+ + + G + L SGL Y LVL++G
Sbjct: 63 PQYEELLQGSGVTFVQDTVEQIDLA-------------GRKIELASGLHYTYTHLVLAVG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI--C 258
+ PGA ++FPF + D + + L + +R ++E+ + Q + I
Sbjct: 110 STVGYFGTPGAEAYSFPFRSGLDVLALRQHLRQSLQRA-SQIEDSQLRQKLLTIAIIGAG 168
Query: 259 PTGTP-----------------GNREAALKVLSARKVQLVLGYFVRCIRRV--GEFEASV 299
PTG GN VL R ++ G C+R + V
Sbjct: 169 PTGVELANTLADLLPNWYATLGGNPHEIRLVLMNRSQNILSGDVNACLRETAYAALQKHV 228
Query: 300 KQPE--SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS--KPLLPHVEP 355
E +GA A D +Y + QPA + EA+ ++WT G+ PL+ +
Sbjct: 229 VPVELLTGAAVT-ALDSGKVEYTRDDQPA-------VLEAETMIWTAGTAINPLVKKLPI 280
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
P+ + + +G+ L + G+P +FA GD L +P PA AQVA+QQA
Sbjct: 281 PDEQ-----RDKQGRPFVTPALNLVGYPEVFAGGDCVTLL----KPEPALAQVAYQQAKA 331
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
NL A R G +M LG +AA + G IGH+ R+L YL
Sbjct: 332 IARNLVAVSAGEKPKASRIFLRGTLMKLGTQEAAA--EIFNKHEVKGRIGHAIRQLTYLE 389
Query: 476 RLPTDEHRLKVGVSWLTK 493
LPT H LKV WL++
Sbjct: 390 MLPTPVHNLKVTTEWLSE 407
>gi|443317936|ref|ZP_21047242.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
6406]
gi|442782462|gb|ELR92496.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
6406]
Length = 421
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 141/417 (33%), Positives = 205/417 (49%), Gaps = 46/417 (11%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PR+CI+GGGFGGLYTAL L + + + L++ ERF+F P+LYE+L+ E+ WEI
Sbjct: 26 PRVCIVGGGFGGLYTALYLSQKCRRRRQPCDITLIEPRERFLFTPLLYEVLTDELKPWEI 85
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP + LL T ++ + L D TV L SG + YD+LV++
Sbjct: 86 APAYVTLLQGTAIRHCRTTADQLHLDDR-------------TVDLASGETLVYDYLVVAT 132
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
G++ + VPG A+ F TL DA +D +L++LE R + A ++ TI
Sbjct: 133 GSQERPVPVPGLADHTHRFRTLADAQALDSRLADLEAR------AQTHNPAPPIQVTIV- 185
Query: 260 TGTPGNREAALKV---LSAR-KVQLV------LGYFVRCIRRVGEFEASVKQPESGAIPN 309
G P E A K+ L R +QLV L F + +RRV +A ++ +
Sbjct: 186 GGGPSGVELACKLADRLGPRGHLQLVERGDCLLKPFSQRVRRVA-IQALHRRRVQICLNM 244
Query: 310 IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
+D L+ G +Q DLV+W G++P +P + P +G
Sbjct: 245 GVVAIEADCITLD---TPHGPTAQ--PTDLVVWVAGTQP-MPWLGDPVAE------TDQG 292
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
Q +L + P +F +GD + + R P TAQ A+Q A NL AAI R
Sbjct: 293 QQLPQGSLQLPQFPEVFVVGDQAVMGWQRDRAAPQTAQAAYQAAATVAHNLLAAIQGRSP 352
Query: 430 LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 486
PFR+ +LG+MM LG +A VS SF G+ L GP+ R++ YL RLPT HR +V
Sbjct: 353 KPFRYLHLGDMMTLGYRNALVS-SF--GLVLHGPLAGLTRQVVYLQRLPTWSHRGRV 406
>gi|427729172|ref|YP_007075409.1| NADH dehydrogenase, FAD-containing subunit [Nostoc sp. PCC 7524]
gi|427365091|gb|AFY47812.1| NADH dehydrogenase, FAD-containing subunit [Nostoc sp. PCC 7524]
Length = 471
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 132/433 (30%), Positives = 199/433 (45%), Gaps = 59/433 (13%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I ILGGGF GL+TAL L Q + ++L++Q +RF FKP+LYELLSGE+ + ++ P
Sbjct: 8 IVILGGGFAGLFTALHLS----QQNYSHPIILIEQRDRFSFKPLLYELLSGELHSEQVYP 63
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
R+ +LLA + V F +D V+ + H V S + EY LVL+LG+
Sbjct: 64 RYQELLAGSNVSFVQDTVQSI-------------ELHQRRVNTASSQVFEYRNLVLALGS 110
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
+ PGAAE+A PF++ E+A + + L + + + K + + + I G
Sbjct: 111 KTTYFNTPGAAEYAMPFTSGEEAIALRKHLRHQLHQAIQTPDPKR--RRLLLTFAIIGAG 168
Query: 262 TPGNREAALKVL------------SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN 309
P E A + ++++VL R I + G+ + ++ A+ N
Sbjct: 169 -PAGIELACTLADLLPIWYDELGGDGSEIRVVLINRSREILK-GDVNSHLRCTVQRAMKN 226
Query: 310 --IAADKNSDKYILELQPAIKGLE------SQIFEADLVLWTVGS--KPLLPHVEPPNNR 359
I D D + ++ G+E +Q+ +A + WT G+ PLL + PNN
Sbjct: 227 RVIPVDFLFDATVTKI--TSDGVEYRQHNQTQMLQAGTIAWTAGTAPHPLLMELPVPNN- 283
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
RG+ TL + P + A GD + SS P P TAQVA+QQ N
Sbjct: 284 --------RGRLLVTPTLQLSDFPEVLAAGDCAT---SSDYPQPPTAQVAYQQGIAIAQN 332
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
L +P +P + Q G +M LG N+ + V + G GH R YL LP
Sbjct: 333 LKRMQERKPTIPIQIQMRGTLMKLGLNEGVA--NLFNKVQIKGQPGHLIRAGTYLQLLPN 390
Query: 480 DEHRLKVGVSWLT 492
H KV WLT
Sbjct: 391 SVHNRKVTTEWLT 403
>gi|443669203|ref|ZP_21134440.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Microcystis aeruginosa DIANCHI905]
gi|159029618|emb|CAO90279.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330505|gb|ELS45216.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Microcystis aeruginosa DIANCHI905]
Length = 420
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 204/440 (46%), Gaps = 75/440 (17%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K +ICILGGGFGGLYTAL L L + Q+ LV+ + F+F P+LYEL++GE+
Sbjct: 2 NKPITKICILGGGFGGLYTALNLSRLTAVKSGQWQITLVEPKDHFLFTPLLYELITGELQ 61
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
WEIAP + LL T + + + ++H V LE+ I++YD+L
Sbjct: 62 RWEIAPSYRQLLTGTQINLKTQKASNIDLNNH-------------QVYLENEEILDYDYL 108
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN----------------- 238
VL++G + G A++ F +LED ++ + +LE +
Sbjct: 109 VLAVGVRNCWPDILGLADYGLTFRSLEDVEKLQTAIHDLETQGKSSINLAIIGGGPNGVE 168
Query: 239 -----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
+RL +KG V + I R A+ + L A+ V L L +R
Sbjct: 169 LACKVADRLGKKGKVYLVERNEEILQNFPKSVRVASYRSLLAKNVSLYLNTGLR------ 222
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
E A N++++I DL+LWT G++
Sbjct: 223 ---------EVAANSITVFKDNTNEFI---------------PIDLLLWTAGTQ-----A 253
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
+ N L D A+G+ T +L + +P +FALGD + + + + +PATAQ A+Q A
Sbjct: 254 QDWINNL-DCQKTAQGKLLTRFSLQLIDYPEVFALGDLAEIYPNK-QVIPATAQAAYQAA 311
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
N+ A I + P+ + +LG+M+ LG+ A VS SF G+ + G + R+ Y
Sbjct: 312 SLLAKNISAVIRKKSPQPYYYLHLGDMLTLGKQSALVS-SF--GINITGRLADIMRRFVY 368
Query: 474 LIRLPTDEHRLKVGVSWLTK 493
++RLP+ H+LKV W K
Sbjct: 369 ILRLPSQRHQLKVFQHWAKK 388
>gi|434385308|ref|YP_007095919.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
gi|428016298|gb|AFY92392.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
Length = 435
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 142/461 (30%), Positives = 218/461 (47%), Gaps = 52/461 (11%)
Query: 61 VTSEDESASQTYTWPDK----KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQ 116
+ +E ++ +T T P + +K ILGGGF GL+TAL L Q + P +L +D+
Sbjct: 4 IMTEVDTLDETLTIPTQLIAAQKLPTLILGGGFTGLFTALHLSH---QHYQTPTIL-IDR 59
Query: 117 SERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMAC 176
RF+FKP+LYE LSGE++ I PR+ +LL +G++F +D V+ +
Sbjct: 60 GSRFIFKPLLYEFLSGEMNTQYICPRYDNLLHKSGIEFIQDTVQSI-------------D 106
Query: 177 THGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER 236
H V L SGL Y LVLSLG+ V GA E FS+ EDA + + L + +
Sbjct: 107 LHQRQVKLASGLHYNYRNLVLSLGSVVGYCGVEGAKEHTLQFSSTEDAVVLAKHLRDCLQ 166
Query: 237 RNFERLEEKGIVQAINVETTICPTGTPGNREAA-LKVLSARKVQLVLGYF----VRCIRR 291
R + G+ + + I G G AA L L L+ G V I+R
Sbjct: 167 R---ATQATGLEKQTLLTFAIMGAGCTGIELAATLADLLPNWYALLGGDITDLRVVVIQR 223
Query: 292 VGEF----EASVKQPESGAIP--NIAADKNSDKYILELQPAIKGLE--SQIFE--ADLVL 341
E S+++ A+ N+A + + ++E++P L+ +QI + A ++
Sbjct: 224 GQEILKGHSDSIRETTQTALQERNVAVELMLETEVIEVRPNTVVLKRNNQIEQLCAATMI 283
Query: 342 WTVGS--KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 399
WT G+ PL+ + P + + GQ + T + G P +FA GD + +
Sbjct: 284 WTAGTAMNPLIDTLSIP-----EASRDRHGQLKLTNTSQLLGFPEVFAGGDCTVMEPQ-- 336
Query: 400 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 459
LPATAQVA+QQ NL A +RPLLP G ++ LG D +V+ F +
Sbjct: 337 --LPATAQVAYQQGAAISHNLQALSENRPLLPVEIGLRGTLLKLGL-DESVADLF-DRYQ 392
Query: 460 LDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 500
+ G +GH R+ AY+ LPT K + WL+ +A
Sbjct: 393 VKGHLGHLIRQAAYVDLLPTPARNFKGTIEWLSDELFHYIA 433
>gi|254413270|ref|ZP_05027041.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179890|gb|EDX74883.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
[Coleofasciculus chthonoplastes PCC 7420]
Length = 454
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 133/440 (30%), Positives = 199/440 (45%), Gaps = 69/440 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILGGGF GL+TAL L + V+L+D+ ERF FKP+LYE SGE+DA +
Sbjct: 7 QTVILGGGFTGLFTALHLAHHHY----PRSVILIDRDERFCFKPLLYEYCSGEMDAQNVV 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF LL ++GV F +D V+ + + V L SG Y LVLSLG
Sbjct: 63 PRFDQLLQDSGVVFVQDTVQDIDLTQR-------------EVKLVSGTTYNYSNLVLSLG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT-ICP 259
+ V GA E AFP T ++A +D++L + +R + ++ Q + V P
Sbjct: 110 SVTGYFGVEGAKENAFPLRTQQNAIAIDQQLRDCLQRAVQTIDPYIRRQLLTVAVIGAGP 169
Query: 260 TGTP-----------------GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQP 302
+G G E VL Q++ G +R E + ++
Sbjct: 170 SGVEMAATLADLLPHWYEALGGTPEDIRIVLINHGSQILKGDINDPLR-----EPTYQEL 224
Query: 303 ESGAIPNIAADKNSDKYILELQPAI---------KGLESQIFEADLVLWTVG--SKPLLP 351
+ A+P + I+E Q K ++ +WT G + PL+
Sbjct: 225 QKRAVPV--------ELIMEAQATAIRPDAVEYKKDDKTHTLPTSTAIWTTGTSTNPLIK 276
Query: 352 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 411
++ P ++ + G+ TL + P +FA GD +A++D+S LP TAQVA+Q
Sbjct: 277 NLPIPKDK-----RDHHGRPYVTPTLQLLDFPEVFAGGDCAAIQDNS---LPPTAQVAYQ 328
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
Q NL+A DR LLP + G ++ LG N+ A + E + G +GH R+
Sbjct: 329 QGQAIADNLFALAFDRQLLPAQVNIRGTLLKLGINNGAA--NLFEKFEVTGEMGHLIRQG 386
Query: 472 AYLIRLPTDEHRLKVGVSWL 491
YL LPT LK+ WL
Sbjct: 387 TYLELLPTPARNLKITAQWL 406
>gi|157412434|ref|YP_001483300.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9215]
gi|157387009|gb|ABV49714.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9215]
Length = 397
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/435 (26%), Positives = 192/435 (44%), Gaps = 80/435 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP I I+G GF G+ AL L++L + +L+VD F+FKP++YE+LS E+ +W
Sbjct: 5 QKP-IVIVGAGFAGMTFALNLKNL----NPSLPILVVDSETNFIFKPLMYEVLSKEIRSW 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
E P+FA + ++ G+ F ++ + + +++ + L + Y +LV+
Sbjct: 60 EATPKFAKIFSDAGITFLRNYLTKISFKENI-------------LEFSDNLKLSYQYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS---------------------ELER 236
G+ P + G E + F+ D +++ L EL
Sbjct: 107 CTGSIPNSFFIKGVDENCYFFNDAHDLNKLNSFLKKSQDITSHKKLFIVGGGPSGIELAC 166
Query: 237 RNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296
+ + ++ + I I NRE A K L RK++++L ++ V + +
Sbjct: 167 KIKDIFTDQFEINLIEKSNEILNKNKIFNREQAEKALEKRKIKVLLN---SSVKEVSDTK 223
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
S+ E+G F+ D+V+WT G KP L ++E
Sbjct: 224 ISI-SSEAGITS--------------------------FDKDIVIWTAGVKPNLSYLET- 255
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
D G+ + L ++ H FA+GD S ++ LP TAQVA Q+ +
Sbjct: 256 -----DQITKKFGRILVNNNLQIENHKNCFAIGDISVIQ--GMEDLPITAQVAMQEGNHL 308
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
NL I + LLPF FQ+ GEM+ LG +A++S GVT G + AR+L Y +
Sbjct: 309 ANNLELLIQGKDLLPFEFQDNGEMISLGIGEASISGL---GVTFSGKLAFEARRLIYASK 365
Query: 477 LPTDEHRLKVGVSWL 491
LP LK SW+
Sbjct: 366 LPDITESLKSASSWI 380
>gi|254526428|ref|ZP_05138480.1| NADH dehydrogenase, fad-containing subunit [Prochlorococcus marinus
str. MIT 9202]
gi|221537852|gb|EEE40305.1| NADH dehydrogenase, fad-containing subunit [Prochlorococcus marinus
str. MIT 9202]
Length = 397
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 117/435 (26%), Positives = 195/435 (44%), Gaps = 80/435 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP I I+G GF G+ AL L++L + +L+VD F+FKP++YE+LS E+ +W
Sbjct: 5 QKP-IVIVGAGFAGMTFALNLKNL----NPSLPILVVDSETNFIFKPLMYEVLSKEIRSW 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
E P+FA + ++ G+ F ++ + + +++ + L + Y +LV+
Sbjct: 60 EATPKFAKIFSDAGITFLRNCLTKISFKENI-------------LEFSDNLKLSYQYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVD------------RKL---------SELER 236
G+ P + G E + F+ D +++ +KL EL
Sbjct: 107 CTGSIPNSFFIKGVDENCYFFNDAHDLNKLNSFFKKSQDITSHKKLFIVGGGPSGIELAC 166
Query: 237 RNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296
+ + ++ + I I NRE A + L RK+ ++L ++ V + +
Sbjct: 167 KIKDIFTDQFEINLIEKSNEILNKNKIFNREQAEQALEKRKINVLLN---SSVKEVSDTK 223
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
S+ E+G F+ D+V+WT G KP L ++E
Sbjct: 224 ISI-SSEAGITS--------------------------FDKDIVIWTAGVKPNLSYLET- 255
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
D G+ + L ++ H FA+GD S ++ LP TAQVA Q+ +
Sbjct: 256 -----DQITKKFGRILVNNNLQIENHKNCFAIGDISVIQ--GMEDLPITAQVAMQEGNHL 308
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
NL I + LLPF FQ+ GEM+ LG +A++S GVTL G + AR+L Y +
Sbjct: 309 ANNLALLIQGKDLLPFEFQDNGEMLSLGIGEASISGL---GVTLSGKLAFEARRLIYASK 365
Query: 477 LPTDEHRLKVGVSWL 491
LP + LK SW+
Sbjct: 366 LPDIKESLKSASSWI 380
>gi|428182756|gb|EKX51616.1| hypothetical protein GUITHDRAFT_102877 [Guillardia theta CCMP2712]
Length = 447
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 205/431 (47%), Gaps = 87/431 (20%)
Query: 71 TYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQ--VLLVDQSERFVFKPMLYE 128
+ W +K RICI+GGGFGGLYTAL L + K + V L+ SERFV+ P LYE
Sbjct: 63 SLNWSEK---RICIVGGGFGGLYTALNLAKYLEAKGKSKETSVTLISDSERFVYSPFLYE 119
Query: 129 LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL 188
L++GE+ WE+AP + D+L TGV+F + + + + + ++ +A GG
Sbjct: 120 LVTGELQDWEVAPVYTDVLKGTGVKFLQGKAQSVDKINKT-ISVDLASLSGG-----GKQ 173
Query: 189 IVEYDWLVLSLGAEPK--LDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG 246
V YD L+L+ G K + PG F F +LEDA ++ +L+ L+ N +K
Sbjct: 174 EVSYDKLILATGGNSKDEKEGEPG----VFGFRSLEDAKKLRARLAGLKFAN-----KKP 224
Query: 247 IVQAI--------------------NVETTICPTGTPGNREAALK---VLSARKVQLVLG 283
I A+ NV+ TI G A L V + R +L +
Sbjct: 225 IKIAVVGGGYPGIELSCSLAANMKKNVDITIFQRGDKILPRANLYNRIVATQRLAELGVK 284
Query: 284 YFVRC-IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 342
F+R + + + S KQ +GA+ DK+ D+++
Sbjct: 285 KFLRTEVVEIKDDSVSWKQ-NNGAVAE-------DKF------------------DIIIR 318
Query: 343 TVGSKPLLPH---VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 399
S+P + + V+ + R+H ++ L VK ++A+GD + DSSG
Sbjct: 319 ASSSRPSVLNGLDVQEEDGRIH-----------VNDMLKVKEEEDLYAVGDIARCIDSSG 367
Query: 400 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 459
P+P+TAQ+A QQA+ A WN+ A + L FR Q+LGEM+ LG A++S S G+
Sbjct: 368 SPVPSTAQIAMQQAEVAAWNVVADLTGGVPLTFRRQDLGEMLSLGGYTASLS-SKAFGLQ 426
Query: 460 LDGPIGHSARK 470
LD + H R+
Sbjct: 427 LDDKLAHLLRR 437
>gi|123965327|ref|YP_001010408.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. MIT 9515]
gi|123199693|gb|ABM71301.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9515]
Length = 395
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 120/436 (27%), Positives = 193/436 (44%), Gaps = 83/436 (19%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP I I+G GFGG+ A L+ L + +L+VD RF+FKP++YE++S E+ W
Sbjct: 5 KKP-IVIVGAGFGGMTVASNLKRL----NPSLPILVVDSEARFLFKPLMYEVISEELSMW 59
Query: 138 EIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
E P F+ + ++ G+ F ++ K+ L N + H G Y++L+
Sbjct: 60 ETTPEFSKIFSDLGITFLRNCLTKIRFDEKILEFNDDL---HIG-----------YEFLI 105
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFER--------------- 241
L G+ V G E + F+ L+D ++ L + + ++
Sbjct: 106 LCTGSVSSNFSVKGVDENCYFFNNLKDLTKLKSFLKQFQNNKIKKNLFVIGAGPSGVEIA 165
Query: 242 ------LEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 295
++K + + I NRE A K L RK+ ++L V+ I
Sbjct: 166 CKIHDTYKDKFDISIVERSNEILGQNKIFNREEAEKALERRKINILLNSTVQEI------ 219
Query: 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
S+K I L + E + E D+V+WT G KP LP+++
Sbjct: 220 --------------------SEKKISILNDS----EIKKLEQDVVIWTAGIKPNLPYIDE 255
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
++ +G+ + ++ + FA+GD S ++ LP TAQVA QQ D
Sbjct: 256 QVKQI-------KGRILVNNKFQIENYLNSFAIGDISIIQ--GMEELPLTAQVAMQQGDH 306
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
N+ ++ LLPF FQ+ GEM+ LG +A++S GVTL G + AR+L Y
Sbjct: 307 LAKNIERIFLEQDLLPFDFQDNGEMISLGMGEASISAL---GVTLSGKLAFEARRLIYAS 363
Query: 476 RLPTDEHRLKVGVSWL 491
++P LK SWL
Sbjct: 364 KMPDISRSLKSTASWL 379
>gi|88807179|ref|ZP_01122691.1| putative NADH dehydrogenase, transport associated protein
[Synechococcus sp. WH 7805]
gi|88788393|gb|EAR19548.1| putative NADH dehydrogenase, transport associated protein
[Synechococcus sp. WH 7805]
Length = 391
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 196/446 (43%), Gaps = 90/446 (20%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+++P I ++GGGF GL T L L + +P ++L++ +FVF P+LYELLSGE+ A
Sbjct: 8 QERP-IIVVGGGFAGLSTLLTLSRV----HPRPPLVLIEPKAQFVFVPLLYELLSGELQA 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
WE+AP +A L+ G+ +D V + DH T GG L+ Y LV
Sbjct: 63 WEVAPDYAPLIQGHGISHIRDIVTSVNVEDH------SITTAGGDHLV-------YSQLV 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------------------ 238
L+ GA P +PG + A F +L D + +L +L R
Sbjct: 110 LATGAVPDDFGIPGVRDHALGFHSLRDLAPLQERLRQLRLRPSGTSSVVIVGAGATGVEL 169
Query: 239 ----FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR---- 290
+ LE V ++ I NRE A + L R + + L V ++
Sbjct: 170 ACKLVDLLEGAAQVHLVDQGDQILARSRAFNREQAERALKRRGINVHLKTRVLSVKPDSV 229
Query: 291 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350
R E V+QP G I WT GSKP +
Sbjct: 230 RWNGIEGDVEQPHDGLI----------------------------------WTAGSKPNI 255
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD--SSALRDSSGRPLPATAQV 408
P ++P + LH + + D+TL ++G P + ALGD + A D P P +AQ
Sbjct: 256 PDLQP-SAELH------QKRLPVDQTLRLQGQPDVLALGDIATHAPTDEGQTPWPLSAQA 308
Query: 409 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 468
A QQ A L A + PF FQ+LGEM+ LG +DA ++ G+TL GP+
Sbjct: 309 AIQQGQAAARTLEAHLKGGTPSPFIFQDLGEMLSLGISDATITGM---GMTLAGPLAFKI 365
Query: 469 RKLAYLIRLPTDEHRLKVGVSWLTKS 494
R+LAYL RLP L+ +WL S
Sbjct: 366 RRLAYLTRLPGLSLGLRSAGAWLLGS 391
>gi|436737040|ref|YP_007318404.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
gi|428021336|gb|AFY97029.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
Length = 473
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 134/442 (30%), Positives = 193/442 (43%), Gaps = 62/442 (14%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
++K ILGGGF GL+TAL L Q+ ++P ++LVD+ +RF FKP+LYELLSGE+
Sbjct: 2 NQKSNPTLILGGGFVGLFTALHLSR---QNYQQP-IVLVDREDRFSFKPLLYELLSGELH 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++ PR+ DLLA + V F +D VK + H V+L SG YD L
Sbjct: 58 PRQVHPRYTDLLAESSVTFVQDTVKSI-------------DLHRQQVVLASGRDYAYDRL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
VL+LG++ PGAAE+A P ++ +A + +L RR K + V
Sbjct: 105 VLALGSKVTYLETPGAAEYALPLTSGAEAIALRDRLQAQLRRAVMTPNPKERCPLLTVAV 164
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGY----------FVRCIRRVGEF-----EASVK 300
G A +++ L L Y V I R GE + ++
Sbjct: 165 I-------GAGPAGIELACTLGDLLPLWYEDLGGDVDEVRVILINRSGELLKGDINSKLR 217
Query: 301 QPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVLWTVGSKPLLPHVEPP 356
A+ D + + P +G + +A + WT G+ P
Sbjct: 218 SNAYRALKQRGVQLLFDAAVAAIHPDAVEFKRGERTYSIKAGTIAWTAGTS--------P 269
Query: 357 NNRLHDLPL------NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
+ L +LP+ + RG+ TL + P +FA GD + RD P P TAQVA+
Sbjct: 270 HPLLMELPISKPEYRDRRGRLLVTPTLQLPDFPEVFAAGDCATNRDD---PQPPTAQVAY 326
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
QQ NL A +PL P G +M LG N+ + + + G GH R
Sbjct: 327 QQGKAIAHNLQAIEEGKPLAPAMVHLRGTLMKLGLNEGVA--NLFDKFPIKGQPGHLIRT 384
Query: 471 LAYLIRLPTDEHRLKVGVSWLT 492
YL LPT +KV WLT
Sbjct: 385 ATYLELLPTIWRNVKVTADWLT 406
>gi|78778470|ref|YP_396582.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. MIT 9312]
gi|78711969|gb|ABB49146.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9312]
Length = 404
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/427 (26%), Positives = 197/427 (46%), Gaps = 64/427 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP I I+G GF G+ AL +++L + V++VD + F+FKP++YE+LS E+ W
Sbjct: 12 QKP-IVIVGAGFAGMTAALNIKNL----NPSLPVIVVDSASNFIFKPLMYEVLSKEIRLW 66
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
E P+FA++ ++ G+ F K+ + + +++ + L + + +LV+
Sbjct: 67 EATPKFANIFSDAGITFLKNCLTKISFKENI-------------LEFSDELKLSFQYLVI 113
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
G+ P ++ G E + F+ D +V L E ++ L +K +
Sbjct: 114 CTGSIPNTFLIKGVEENCYFFNDFHDLNKVKSFLKESQKT---LLHKKLFIVG------- 163
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF------------EASVKQPESG 305
G P E A K+ K Q + + I R E E ++++ +
Sbjct: 164 ---GGPSGIELACKIKDIYKDQ----FEINVIERSNEILSRNKIFNREQAETALEKRKIN 216
Query: 306 AIPNIAADKNSD-KYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 364
+ N + S+ + I+ + I L+ D+V+WT G KP L +++ D
Sbjct: 217 VLLNTTVKEVSETRIIISSEDGITSLDK-----DIVIWTAGVKPNLSYLQT------DEI 265
Query: 365 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 424
G+ + L ++ H FA+GD S + + LP TAQVA Q+ + NL I
Sbjct: 266 TKKFGRILVNNNLQIENHNNCFAIGDISII--AGMEDLPITAQVAMQEGNHLAKNLELLI 323
Query: 425 NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 484
+ LPF FQ+ GEM+ LG +A+++ GVTL G + AR+L Y +LP L
Sbjct: 324 QGKDPLPFEFQDNGEMISLGIGEASIAGL---GVTLSGKLAFEARRLIYASKLPDINESL 380
Query: 485 KVGVSWL 491
K SW+
Sbjct: 381 KSAYSWI 387
>gi|33860642|ref|NP_892203.1| NADH dehydrogenase [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33633584|emb|CAE18541.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 394
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 120/438 (27%), Positives = 195/438 (44%), Gaps = 71/438 (16%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP I I+G GFGG+ A L+ L + +L+VD +F+FKP++YE+LS E+ W
Sbjct: 5 KKP-IVIVGAGFGGMTVASNLKEL----NPSLPILVVDSEAKFIFKPLMYEVLSEELSMW 59
Query: 138 EIAPRFADLLANTGVQFFKDRV-------KLLCPSDHLGVNGPMACTHGGTVLLESGLIV 190
E AP F+++ +N G+ F ++ + K+L SD L +
Sbjct: 60 ETAPEFSNIFSNLGITFLRNCLTKIRFDEKILEFSDDLNIG------------------- 100
Query: 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQA 250
Y+ L+L G+ V G E + F+ L D ++ L + + ++
Sbjct: 101 -YECLILCTGSLSSNFSVRGVDENCYFFNNLNDLKKLKSFLQKFQNDKIKK--------- 150
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG--------EFEASVKQP 302
P E A K+ K + + R +G E E ++++
Sbjct: 151 ----NLFVIGAGPSGVEIACKINDIYKNKFDISIVERSNEILGRNKIFNREEAEKALEKR 206
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + N + SD+ I + G E + + D+V+WT G KP LP+++ +
Sbjct: 207 KINVLLNSTVQEISDQKI----SILDGSEIKDLDQDIVIWTAGVKPNLPYIDAQVTQ--- 259
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
G+ +E + FA+GD S ++ LP TAQVA QQ + N+
Sbjct: 260 ----KDGRILVNENFQIDNCVNSFAIGDISIIK--GMEDLPLTAQVAMQQGNHLAKNIEL 313
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 482
++ LLPF F++ GEM+ LG +A++S GVTL G AR+L Y ++P
Sbjct: 314 LFQEKELLPFNFEDNGEMISLGIGEASISAL---GVTLSGKFAFEARRLIYASKMPDISK 370
Query: 483 RLKVGVSWL--TKSAIDS 498
LK SWL KS I++
Sbjct: 371 SLKSTASWLFQKKSTINN 388
>gi|427702846|ref|YP_007046068.1| NADH dehydrogenase, FAD-containing subunit [Cyanobium gracile PCC
6307]
gi|427346014|gb|AFY28727.1| NADH dehydrogenase, FAD-containing subunit [Cyanobium gracile PCC
6307]
Length = 406
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 135/422 (31%), Positives = 193/422 (45%), Gaps = 72/422 (17%)
Query: 92 LYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG 151
LYTAL L Q P VLL++ ++RF+F P+LYELLSGE+ WEIAPR+ LLA G
Sbjct: 30 LYTALALA----QRKHHPPVLLIEPNDRFLFLPLLYELLSGELRGWEIAPRYDGLLAGRG 85
Query: 152 VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGA 211
+ + +DRV+ + T G + G + Y LVL+ GAE VPGA
Sbjct: 86 LAWLQDRVERI-------------DTDGHRLHTAGGRTIAYGRLVLATGAESNTFAVPGA 132
Query: 212 AEFAFPFSTLEDACRVDRKLSELER--RNFERLEEKG--------------------IVQ 249
+ F +L D R+ R +++L + R +RL G +++
Sbjct: 133 DRHSLGFRSLADVERLQRLVADLRQQPRPLQRLAVVGAGPTGVELACKLADMAQGSAVIE 192
Query: 250 AINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN 309
I + P NRE A L R V+L V+ E+ AI
Sbjct: 193 LIEQGPQLLPQARAFNREQAALALQRRDVRL-------------RTRTQVEAVEAEAI-T 238
Query: 310 IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
+ + D PA ++ V+WT G P ++P ++RG
Sbjct: 239 LRCHPDGDS------PA----HAETLAVRAVVWTAGLSFRPPRIDPAPA------CDSRG 282
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
+ L ++ H +F GD +A D PATAQVAFQQA NL ++ PL
Sbjct: 283 RLLCGPDLRLRDHEGLFVAGDLAAPVDPEDTTPPATAQVAFQQAPVLAANLIRSLAGEPL 342
Query: 430 LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVS 489
PF + +LGEMM LG +A+++ + GVTL GP + R+LAYL RLP H+ +V
Sbjct: 343 EPFHWNDLGEMMSLGVGEASLTAA---GVTLAGPAAYQLRRLAYLTRLPGRSHQWRVAAG 399
Query: 490 WL 491
WL
Sbjct: 400 WL 401
>gi|123967632|ref|YP_001008490.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. AS9601]
gi|123197742|gb|ABM69383.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. AS9601]
Length = 397
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 116/435 (26%), Positives = 193/435 (44%), Gaps = 80/435 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP I I+G GF G+ AL L+ L + +L+VD F+FKP++YE+LS E+ +W
Sbjct: 5 QKP-IVIVGAGFAGMTFALNLKKL----NPSLPILVVDSETNFIFKPLMYEVLSKEISSW 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
E P+FA++ ++ G+ F ++ + + +++ + L + Y +LV+
Sbjct: 60 EANPKFANIFSDAGITFLRNCLTKIDFKENI-------------LEFSDELKLSYQYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-----LERRNF------------- 239
G+ P + G E + F+ + D +++ L + L ++ F
Sbjct: 107 CTGSIPNSFFIKGVDENCYFFNDVNDLNKLNYFLKKSQNTALHKKLFIVGGGPSGIELAC 166
Query: 240 ---ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296
+ ++ + I I NRE A K L RK+ ++L ++ V E +
Sbjct: 167 KIKDIFTDQFEINVIEKSNEILNKNKIFNREQAEKALEKRKINVLLN---STVKEVSETK 223
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
++ S + + DK D+V+WT G KP L ++E
Sbjct: 224 ITI----SSEVGITSLDK-----------------------DIVIWTAGVKPNLSYLET- 255
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
D G+ + L ++ H FA+GD S + LP TAQVA Q+ +
Sbjct: 256 -----DQITKKFGRILVNNNLQIENHKNCFAIGDISVIE--GMEDLPITAQVAMQEGNHL 308
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
NL + + LPF FQ+ GEM+ LG +A++S GVTL G + AR+L Y R
Sbjct: 309 ANNLELLVQGKDPLPFEFQDNGEMISLGIGEASISGL---GVTLSGKLAFEARRLIYASR 365
Query: 477 LPTDEHRLKVGVSWL 491
LP LK SW+
Sbjct: 366 LPDITESLKSASSWI 380
>gi|126695432|ref|YP_001090318.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. MIT 9301]
gi|126542475|gb|ABO16717.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. MIT 9301]
Length = 397
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 117/437 (26%), Positives = 191/437 (43%), Gaps = 84/437 (19%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQ--VLLVDQSERFVFKPMLYELLSGEVD 135
+KP I I+G GF G+ AL L++L P +L+VD F+FKP++YE+LS E+
Sbjct: 5 QKP-IVIVGAGFAGMTFALSLKNLY------PSLPILVVDSEPNFIFKPLMYEVLSKEIR 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+WE P+FA++ ++ G+ F ++ + + D + + L + Y +L
Sbjct: 58 SWEATPKFANIFSDAGITFLRNCLTKISFKDSI-------------LEFSDELKLSYQYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE-----RRNF----------- 239
V+ G+ P + G E + F+ + D +++ L E + ++ F
Sbjct: 105 VICTGSIPNSFFIKGVDENCYFFNDVHDLNKLNSFLKESQDTASHKKLFIVGGGPSGIEL 164
Query: 240 -----ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
+ ++ + I I NRE + K L RK+ ++L ++ V E
Sbjct: 165 ACKIKDIYTDQFEINVIEKSNEILNKNKIFNREQSEKALEKRKINVILN---STVKEVSE 221
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
+ S+ S + + DK D+V+WT G KP L +E
Sbjct: 222 TKISI----SSEVGITSLDK-----------------------DIVIWTAGVKPNLSFLE 254
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
D G+ + L ++ H FA+GD S + LP TAQVA Q+ +
Sbjct: 255 T------DQITKKFGRILVNNNLQIENHKNCFAIGDISVIE--GMEDLPITAQVAMQEGN 306
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
N I + LPF FQ+ GEM+ LG +A++S GVTL G + AR+L Y
Sbjct: 307 HLANNFELLIQGKDSLPFEFQDNGEMISLGIGEASISGL---GVTLSGKLAFEARRLIYA 363
Query: 475 IRLPTDEHRLKVGVSWL 491
+LP LK SW+
Sbjct: 364 SKLPDITESLKSASSWI 380
>gi|116073854|ref|ZP_01471116.1| putative NADH dehydrogenase, transport associated protein
[Synechococcus sp. RS9916]
gi|116069159|gb|EAU74911.1| putative NADH dehydrogenase, transport associated protein
[Synechococcus sp. RS9916]
Length = 400
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 126/443 (28%), Positives = 183/443 (41%), Gaps = 94/443 (21%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+GGGF GL ALRL + +P V+LV+ ++F F P+LYELLSGE+ WE+ P
Sbjct: 16 VVIVGGGFAGLTVALRLS----RQRPRPGVVLVEPRKQFAFLPLLYELLSGEMQPWEVVP 71
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ LL ++G+ DRV + D V SG + Y+ LVL+ G+
Sbjct: 72 SYDTLLNSSGIAVIHDRVSAVNWKDK-------------EVQTASGQRLAYEQLVLATGS 118
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR------------------------ 237
+P VPG E A F + +D + +++ +L+R+
Sbjct: 119 QPNDFGVPGVKEHALQFHSPDDVTALRQRIKDLQRQGGAVEGAVPALVIVGAGAAGVELA 178
Query: 238 -NFERLEEKGI-VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 295
L E I V I I P NRE A L+ + V L V +
Sbjct: 179 CKLADLTEGRISVHLIEQGDRILPMAKAFNREQAEAYLAQQGVHCHLNTRVESV------ 232
Query: 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP----LLP 351
PN + ++ D +S + ++WT G+KP L+P
Sbjct: 233 -----------TPNDVSLRDGD-------------QSTVLPHQGLIWTAGNKPRRPQLIP 268
Query: 352 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG---RPLPATAQV 408
+ N RL DE L + P LGD + + G P P TAQV
Sbjct: 269 EITASNGRL-----------AVDEALRSQDLPDCLVLGDLAMRAQADGAERSPWPCTAQV 317
Query: 409 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 468
A QQ + A L A PF + +LGEM+ LG A ++ G+TL GP+
Sbjct: 318 AMQQGEAAANTLIALQKGTQPEPFAYNDLGEMLSLGIGKATLTGM---GITLAGPLAFKL 374
Query: 469 RKLAYLIRLPTDEHRLKVGVSWL 491
R+L YL R P L+ +WL
Sbjct: 375 RRLTYLARFPRLSLGLRSAGAWL 397
>gi|411120814|ref|ZP_11393186.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410709483|gb|EKQ66998.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 475
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 133/443 (30%), Positives = 202/443 (45%), Gaps = 77/443 (17%)
Query: 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
I+GGGF GL+TAL L Q+ ++P V+L++ +RF FKP+LYELLSGE+ ++ PR
Sbjct: 9 VIVGGGFVGLFTALHLSR---QNYQRP-VILIEPHDRFSFKPLLYELLSGELHVQQVHPR 64
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
+ DLL+N+ V +D+V+ +N P V+L SG EY LVL+LG++
Sbjct: 65 YIDLLSNSHVTLVQDKVQ--------SINLPQR-----QVVLASGKHYEYGNLVLALGSK 111
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRVDRKLS----------ELERRNFERLEEKGIVQA-- 250
PGA E+ P ++ +A + L + ERR L I+ A
Sbjct: 112 TAYLNTPGAVEYTMPLTSGTEAIALRDHLKYCLHSAAQTLDAERRRL--LLTVAIIGAGP 169
Query: 251 INVETTICPTGT---------PGNREAALKVLSARKVQLVLGYF---VRCIRRVGEFEAS 298
+E C G G+ + VL R +L+ G +RC + S
Sbjct: 170 AGIELA-CTLGDLLPLWYEDLGGDGDEVRVVLFNRSRELLKGDINSRLRC-----RVQRS 223
Query: 299 VKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQI---FEADLVLWTVGSKPLLPHVE 354
++Q A+P + D + +QP A++ + ++ +A + WT G+
Sbjct: 224 LRQ---RAVP---VELVFDATVKAIQPDAVEYEQHEVLHSLKAGTIAWTAGTA------- 270
Query: 355 PPNNRLHDLPL-----NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 409
P+ L +LP+ + RG+ TL + P +FA GD + P P TAQVA
Sbjct: 271 -PHPLLMNLPVAPEHRDRRGRLLVTPTLQLPDFPDVFAAGDCAT---PDANPQPPTAQVA 326
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
+QQ NL A + P LP G +M LG N+ + V + G GH R
Sbjct: 327 YQQGKAIAHNLQAIATNNPPLPVIIHLRGTLMKLGLNEGVA--NLFNKVEIKGQPGHLIR 384
Query: 470 KLAYLIRLPTDEHRLKVGVSWLT 492
+ YL LP+ H K+ WLT
Sbjct: 385 EATYLELLPSPIHNAKITADWLT 407
>gi|47600773|emb|CAG29362.1| putative type II NAD(P)H dehydrogenase [Arabidopsis thaliana]
Length = 80
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 73/80 (91%)
Query: 434 FQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTK 493
FQNLGEMM LGR DAA+SPSF+EG+TL+GPIGH+ARKLAYLIRLPTDEHR KVG+SW K
Sbjct: 1 FQNLGEMMTLGRYDAAISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRFKVGISWFAK 60
Query: 494 SAIDSVALLQSTLTKVLSSS 513
SA+DS+ALLQS LTKVLS S
Sbjct: 61 SAVDSIALLQSNLTKVLSGS 80
>gi|443324636|ref|ZP_21053376.1| NADH dehydrogenase, FAD-containing subunit [Xenococcus sp. PCC
7305]
gi|442795762|gb|ELS05109.1| NADH dehydrogenase, FAD-containing subunit [Xenococcus sp. PCC
7305]
Length = 412
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 128/440 (29%), Positives = 195/440 (44%), Gaps = 69/440 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQSERFVFKPMLYELLSGEVDAWEI 139
+ I+GGGF GL+T L L K PQ V L+DQ + F+F P+LYEL++GE+ ++
Sbjct: 3 KTIIIGGGFVGLFTVLHL-----CHHKYPQSVTLIDQKDHFIFNPLLYELMTGEMTPDQV 57
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P + +LL + FF+D+V + + L S +YD LVL+L
Sbjct: 58 CPTYRELLKGSSATFFEDQVDRIDLEQR-------------KIYLSSDTHYDYDNLVLAL 104
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC- 258
G + + GA +AFPF +DA ++ + L + ++ + E+K + + TI
Sbjct: 105 GKKSGYFGIEGAENYAFPFRNRDDALKLSQHLQKSLQKAGQTEEDKSRQRLLTF--TIVG 162
Query: 259 --PTGTP-----------------GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
PTG GN E +L +R +L+ G +R + + +A
Sbjct: 163 GGPTGIEMAGTLADLLYRWYSKIGGNLEEIKILLVSRPKELLKGDINAHLRDIVK-KAFQ 221
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK--PLL------P 351
+P + A+ +E Q K E+ E + V+W G++ PLL P
Sbjct: 222 HRPIKIDLILGASVSKVTASTVEYQ---KEEETHSIETNTVIWAAGTQTNPLLRSLNIAP 278
Query: 352 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 411
N LH LP TL + +P +FA GD S LP TAQVA+Q
Sbjct: 279 ENRAKNGSLHILP-----------TLQLPEYPNVFAAGDCIF---QSELHLPPTAQVAYQ 324
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
Q NL A + L P + G MM LG N++A + + + G +GH R+
Sbjct: 325 QGKAIANNLIAKVKGNSLKPAEVKLRGSMMKLGINESAA--NIFDRFEVSGEVGHLIREA 382
Query: 472 AYLIRLPTDEHRLKVGVSWL 491
YL LPT H KV +W+
Sbjct: 383 TYLELLPTPIHDFKVTTTWI 402
>gi|428316353|ref|YP_007114235.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Oscillatoria nigro-viridis PCC 7112]
gi|428240033|gb|AFZ05819.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Oscillatoria nigro-viridis PCC 7112]
Length = 490
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 134/466 (28%), Positives = 197/466 (42%), Gaps = 92/466 (19%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILGGGF GL+TAL L + V+L+D SERF FKP+LYE SGE+DA ++
Sbjct: 7 QTVILGGGFAGLFTALHLA----HEHYPRSVILIDSSERFCFKPLLYEYFSGEMDANQVV 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F +LL ++G+ F +D V+ + H V L SG Y LVL+LG
Sbjct: 63 PTFKELLEDSGIIFVQDTVQSI-------------DLHEREVKLTSGDCYNYSNLVLALG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR--NFERLEEK----------GIV 248
+ V GA E+AF F T E+A +DR L + +R E E++ G
Sbjct: 110 SVTGYFGVEGAKEYAFDFRTQENAIALDRHLRDCLQRAVQIEDPEQRRRLLTVAAIGGGP 169
Query: 249 QAINVETTICP------TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS---- 298
+ + T+ GN + VL +++ G +R E E
Sbjct: 170 SGVEMAATLGDLLPHWYEALGGNPQEVRVVLINHGNEILKGDINSHLRETAEQELQKRAV 229
Query: 299 ----VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPH 352
+ E+ AI + + D +S+I A +WT G + PL+ +
Sbjct: 230 PVELIAGAEATAIRRDSVEYKRDG------------KSEILSASTAIWTSGTATHPLIKN 277
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS-------------- 398
+ P+ + G+ TL + P +FA GD + SS
Sbjct: 278 LPIPDEH-----RDKHGRLHVTPTLQLPDFPEVFAGGDCAVDVQSSTVEGHEYKHIELHP 332
Query: 399 ------------GRPLPATAQVAFQQADFAGWNLWA-AINDRPLLPFRFQNLGEMMILGR 445
+PLPATAQVA+QQ NL A A+ P P + G ++ LG
Sbjct: 333 ELISYSSEPHKDTKPLPATAQVAYQQGAAIAHNLKAIALGHEP-KPAQVNLRGTLLKLGL 391
Query: 446 NDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
++A + + V + G +GH R+ YL LPT H KV WL
Sbjct: 392 ENSAA--NIYDVVEVTGEVGHLIRQGTYLELLPTPVHNFKVTTDWL 435
>gi|427417211|ref|ZP_18907394.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
7375]
gi|425759924|gb|EKV00777.1| NADH dehydrogenase, FAD-containing subunit [Leptolyngbya sp. PCC
7375]
Length = 401
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 203/413 (49%), Gaps = 54/413 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGGFGGLYTAL L+ ++ + + L++ E+F+F P+LYE+L+ E+ WE+
Sbjct: 19 PRIVIVGGGFGGLYTALYLQK--YRHLRDSSITLIEPREQFLFTPLLYEVLTEELLLWEV 76
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
AP + LL T VQ+ +D +DH+ + V+L G + YD+LV+S
Sbjct: 77 APSYQSLLMGTNVQWQQDW------ADHIDLEQQ-------RVMLRQGDSLPYDYLVVST 123
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
GA+ + +PG E A F +L+D V +L +L R A V T+
Sbjct: 124 GAKTRSLPIPGIREHAITFRSLDDVVTVKARLDQLVR------------AAHPVAVTVIG 171
Query: 260 TGTPGNREAALKVLS--ARKVQLVLGYFVRCIRRVGE----FEASVKQPESGAIPNIAAD 313
G G E A KV +K Q VR + R + F +++ A+ D
Sbjct: 172 AGASGV-ELATKVADRLGQKGQ------VRLVDRGNQILKPFPKGLQRQAMDALLQRNVD 224
Query: 314 KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAET 373
I ++ P GL+ + L LW G++P + + PP + N +GQ
Sbjct: 225 VLLQTQINQVGPTTVGLDEGQVPSHLTLWATGTEP-VEWLGPP------VRTNDQGQVWV 277
Query: 374 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 433
TL ++ + +F +GD +A +P+P TAQ A+Q A NL R FR
Sbjct: 278 RSTLQLEDYFNVFVVGDVAA----QPKPIPNTAQAAYQAAAAVASNLAYMTRQRQPKSFR 333
Query: 434 FQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 486
+ +LG+M+ LG+ A V SF G++L G +G R+ Y+ RLPT+ HRLKV
Sbjct: 334 YLHLGDMLALGKGTAGVW-SF--GISLGGKLGGIIRRAVYIHRLPTNRHRLKV 383
>gi|159467579|ref|XP_001691969.1| type-II NADH dehydrogenase [Chlamydomonas reinhardtii]
gi|158278696|gb|EDP04459.1| type-II NADH dehydrogenase [Chlamydomonas reinhardtii]
Length = 502
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 94/150 (62%), Gaps = 21/150 (14%)
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP-----LPATAQVAFQQADFAG 417
P+NARG ET+ TL V G +FALGD + S P LPATAQVAFQQAD+A
Sbjct: 326 FPVNARGALETEPTLRVSGSDNVFALGDVAVAAPSPADPHHTQALPATAQVAFQQADYAA 385
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS-----PSFV-----------EGVTLD 461
WN+WAAIN RPLLPF++Q+LG MM LG+ +AAV+ P+ + GVT++
Sbjct: 386 WNVWAAINGRPLLPFKYQHLGSMMALGQTNAAVALPIPVPTALADAGKSSAVGDSGVTVE 445
Query: 462 GPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
GP+ R+ AYL R PT+E RL V SW+
Sbjct: 446 GPLAQLMRRGAYLYRQPTNEQRLNVATSWV 475
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 180/397 (45%), Gaps = 52/397 (13%)
Query: 43 RFISFAASNSSGRNGDLVVTSE--DESASQTYTWPDKKKPRICILGGGFGGLYTALRLES 100
R + F A+ S +G V ++ A T PR+ +LGGGFGGLY A+RLE
Sbjct: 54 RLMGFRAAGSQAPHGARAVATQATGSPAFGPGTSSGHHSPRVVVLGGGFGGLYAAVRLEQ 113
Query: 101 LVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVK 160
L+W KPQ+ LVDQ++RFVFKP+LYEL++G A E++P F LLA ++F + +V
Sbjct: 114 LMWPRGNKPQITLVDQADRFVFKPLLYELINGAATADEVSPSFEQLLAPYPIRFVQAQVA 173
Query: 161 LLC-PSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFS 219
+ + H P A G V L G + YD+LV++LG +P VPG E+A PF+
Sbjct: 174 SVSPAAPHADAPDPDAPDAAGAVTLSDGTQLPYDFLVVALGGQPDSRGVPGVKEWAVPFA 233
Query: 220 TLEDACRVDRKLS---------------------ELERRNFERLEEKGIVQAINVETTI- 257
EDA RV L EL ERL +G A+ V+
Sbjct: 234 GYEDALRVKGTLDLLSDAGAGGCVVVVGAGYAGVELAATVAERLRARGAGGAVAVKVLTP 293
Query: 258 -------CPTGTPGNREAALKVLSARKVQLVLGY-FVRCIRRVGEFEASVKQPESGAI-- 307
CP G EAA K L+ V+++ G+ F R E E +++ S +
Sbjct: 294 GSHILEGCPE---GQGEAASKALADLGVEVLTGFPFPVNARGALETEPTLRVSGSDNVFA 350
Query: 308 ---PNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV----GSKPLLPHVEPPNNRL 360
+AA +D + + PA + Q +AD W V +PLLP
Sbjct: 351 LGDVAVAAPSPADPHHTQALPATAQVAFQ--QADYAAWNVWAAINGRPLLPF-----KYQ 403
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 397
H + A GQ L + + G SSA+ DS
Sbjct: 404 HLGSMMALGQTNAAVALPIPVPTALADAGKSSAVGDS 440
>gi|113954176|ref|YP_731705.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp.
CC9311]
gi|113881527|gb|ABI46485.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp.
CC9311]
Length = 436
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 126/435 (28%), Positives = 188/435 (43%), Gaps = 80/435 (18%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I ++GGGF GL TAL L + +P +LL++ ++F+F P+LYELLSGE+ +WEIAP
Sbjct: 60 IIVVGGGFAGLTTALALSN----QRPRPPLLLIEPRQQFLFLPLLYELLSGEMKSWEIAP 115
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ LL + DRV +N T ++ G ++ Y LVL+ G+
Sbjct: 116 SYDSLLQGRRIPHLDDRVT--------SIN-----TEQKSLQTSRGQVLNYSQLVLATGS 162
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF---------------------- 239
EP + G E A F +L D + ++ L R
Sbjct: 163 EPDDFGIAGVKEHALTFHSLLDIPPLKERVHSLCNRAAKDGALVIVGAGATGVELACKLS 222
Query: 240 ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
+ L+ V + + +I NRE A K L R V L RV A+
Sbjct: 223 DMLKGSAAVHLVELGDSILSRSRAFNREQAQKALDQRGVHRHLNT------RVTSLSANA 276
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
Q + +P Q D ++WT G+KP+LP + P
Sbjct: 277 VQLLTNDLP------------------------QSLNHDGLIWTAGTKPVLPTLSPN--- 309
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
P RG D+ L + P + LGD ++ D+ P P +AQ A QQ A
Sbjct: 310 ----PTRERGLLCVDDGLQLTTDPNVVVLGDVASHNDADA-PWPRSAQSALQQGAAAART 364
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
L A + + F+FQ+LGEM+ LG DA+++ G+TL GP+ + R+L YL R+P
Sbjct: 365 LQAIRRGQAVPSFQFQDLGEMLSLGMGDASITGM---GLTLAGPLAYRMRRLTYLARMPG 421
Query: 480 DEHRLKVGVSWLTKS 494
L+ +WL S
Sbjct: 422 LSLSLRSAGAWLVHS 436
>gi|186682194|ref|YP_001865390.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Nostoc
punctiforme PCC 73102]
gi|186464646|gb|ACC80447.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Nostoc
punctiforme PCC 73102]
Length = 456
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 128/445 (28%), Positives = 192/445 (43%), Gaps = 79/445 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+GGGF GL+TAL L + V+L+D+ ERF FKP+LYE GE+D +++
Sbjct: 7 QTVIVGGGFTGLFTALHLA----HEHYPRSVILIDKDERFCFKPLLYEYFDGEMDTFQVV 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF++LL +GV F +D V+ + H V L SG Y LVL+LG
Sbjct: 63 PRFSELLKGSGVIFVQDTVQSI-------------NLHQREVKLASGNSYNYSNLVLALG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR--NFERLEEK----------GIV 248
+ V GA E AFPF T DA +DR L + ++ E +E++ G
Sbjct: 110 SVTGYHQVEGARENAFPFWTQADAIALDRHLRDCLQKAVQTEDVEQRRKLLTVVIVGGGA 169
Query: 249 QAINVETTICP------TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS---- 298
+ + T+ + GN VL +++ G +R + E E +
Sbjct: 170 SGVEMAATLADFLPHWYSALGGNSSEIRVVLLNHGKEILDGDINNPLREIAERELNKRAV 229
Query: 299 ----VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPH 352
+ + E+ AI + + ++ I + +WT G + PL+
Sbjct: 230 PIEMIVEAEATAIGSTSIQYKRNEQI------------ETLATHTTVWTAGTSTHPLIK- 276
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKG-----HPRIFALGDSSALRDSSGRPLPATAQ 407
DLP+ + D L P +F GD +A++D+S LP TAQ
Sbjct: 277 ---------DLPIPKEHRDRRDRPLVTPNLQLLDFPEVFVGGDCAAVQDNS---LPPTAQ 324
Query: 408 VAFQQADFAGWNLWA-AINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 466
VA+QQ NL A A+ + P P + G ++ LG NDAA + V V G H
Sbjct: 325 VAYQQGANIAQNLKALALGEEP-KPAKVNIRGTLLKLGINDAAANLFNVFEVV--GETAH 381
Query: 467 SARKLAYLIRLPTDEHRLKVGVSWL 491
R+ YL LP H K W+
Sbjct: 382 LIRQGTYLTLLPAPIHDFKATTEWV 406
>gi|318040557|ref|ZP_07972513.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp.
CB0101]
Length = 390
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 178/406 (43%), Gaps = 80/406 (19%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V+L++ ERF+F P+LYELLS E+ WE+AP +++LLA GV + +DRV +
Sbjct: 36 VILIEPQERFLFLPLLYELLSQELRRWEVAPSYSELLAGKGVVWLRDRVSQI-------- 87
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
T + E G + Y LVL+ G +P +PG AE F +L D VDR
Sbjct: 88 -----DTAAQQLRTEGGQQIAYSQLVLATGGKPTTYGIPGVAEHCLGFRSLAD---VDRL 139
Query: 231 LS-------------------------ELERRNFERLEEKGIVQAINVETTICPTGTPGN 265
EL + + L+ +++ I + P N
Sbjct: 140 QQLVQQLKQQQRPLQRLAIVGAGASGVELACKLADLLQGAAVLELIEQGEELLPASRSFN 199
Query: 266 REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 325
RE A + L R ++L G V + + LQ
Sbjct: 200 REQAQQALLKRDIRLRTGTRVMAV---------------------------SATAVSLQ- 231
Query: 326 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 385
+G S+ D V+WT G +P + P L L+ RG+ L V G +
Sbjct: 232 --RGNSSETLSCDGVIWTGGVVGSVPEITPA------LELDRRGRLPCQSDLRVIGAEHV 283
Query: 386 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
FA+GD++ D+SG PATAQVA+QQA NL L PF + +LGEM+ LG
Sbjct: 284 FAMGDAALCPDASGDAHPATAQVAYQQATCVAANLLRQRRGEELQPFIWNDLGEMLGLGI 343
Query: 446 NDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
A+++ G+TL G R+LAYL R+P +H+L+V WL
Sbjct: 344 GHASLTGM---GITLAGAAAFQLRRLAYLARMPGLQHQLRVAGGWL 386
>gi|172039319|ref|YP_001805820.1| NADH dehydrogenase [Cyanothece sp. ATCC 51142]
gi|354552414|ref|ZP_08971722.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. ATCC 51472]
gi|171700773|gb|ACB53754.1| probable NADH dehydrogenase [Cyanothece sp. ATCC 51142]
gi|353555736|gb|EHC25124.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. ATCC 51472]
Length = 415
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 121/433 (27%), Positives = 197/433 (45%), Gaps = 59/433 (13%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF 143
I+GGGF GL+TAL L+ + D ++L+DQ+ERF+FKP+LYELLSGE+D +++ PR+
Sbjct: 10 IIGGGFVGLFTALHLQQQNYPDP----IILIDQTERFIFKPLLYELLSGEMDDFQVCPRY 65
Query: 144 ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203
LL VQF D V+ ++ P T+ L+SG I YD LV+ LG+
Sbjct: 66 DKLLDPEKVQFICDTVE--------AIDLPQ-----NTLTLKSGTICNYDKLVIGLGSCS 112
Query: 204 KLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTP 263
+ GA E F T +DA + + L + +R E + + + V I G
Sbjct: 113 SYFGIEGAKEHTLSFRTRQDAITLKQHLQQCLQRGSEIQDSQQRRHLLTV--AIVGAGPS 170
Query: 264 GNREAALKVLSA-----------RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN--I 310
G AA S +++LVL I + G+ ++Q A+ + +
Sbjct: 171 GVELAATLADSLPQWYHQRGGNWAEIRLVLLNQDENILQ-GDINTELRQAAKTALTDKKV 229
Query: 311 AADKNSDKYILELQPAIKGLESQ----IFEADLVLWTVGSK--PLLPHVEPPNNRLHDLP 364
+ + + + ++QP + Q EA ++WT G++ PL +H LP
Sbjct: 230 SVELLLNASVTKVQPRQLYYQYQEQTHTLEAATIVWTAGTQTHPL----------IHSLP 279
Query: 365 L-----NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
+ + +G+ TL + P +F GD + + + PLP AQVA+Q+ N
Sbjct: 280 IPESHRDKQGRLLLAPTLQLPHFPNVFVGGDCATILN---HPLPPLAQVAYQEGTAIAQN 336
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
L A +++ G ++ LG +D+A + + G + R+ YL LP
Sbjct: 337 LQALAHNQKPTHAEVDIKGSLLKLGLDDSAA--QLFDQFVVTGKSAYLIRQGRYLTLLPA 394
Query: 480 DEHRLKVGVSWLT 492
H K WL+
Sbjct: 395 PGHDFKATTEWLS 407
>gi|124024860|ref|YP_001013976.1| NADH dehydrogenase, transport associated [Prochlorococcus marinus
str. NATL1A]
gi|123959928|gb|ABM74711.1| putative NADH dehydrogenase, transport associated [Prochlorococcus
marinus str. NATL1A]
Length = 413
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 191/429 (44%), Gaps = 101/429 (23%)
Query: 98 LESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157
+++L+ + + P ++L+DQS RF+FKP+LYELLSGE++ WE+AP+++ L + G F ++
Sbjct: 47 VQALLARSNGMP-IILIDQSPRFLFKPLLYELLSGELELWEVAPKYSALASELGFIFLEE 105
Query: 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFP 217
C + G+ + + SG V+Y LV+S G ++ E+A+
Sbjct: 106 -----CVVEVDGLERKLITS--------SGTKVKYSQLVISTGVTTDFSLLRDLKEYAYG 152
Query: 218 FSTLEDACRVDR-----------------------------KLSELERRNFE-RLEEKGI 247
FS+L D R+ KLS+L E L +KG
Sbjct: 153 FSSLNDLVRIQELIISINNSSNHSNPLIIAGAGPTGVELACKLSDLVNNRVEIYLVDKG- 211
Query: 248 VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI 307
I NRE A+ ++ R +++ L +++ I E +++ +
Sbjct: 212 -------NKILSKSKSFNREKAIDAIAERNIKIYLEHYIESIN-----ENTIE------L 253
Query: 308 PNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL-LPHVEPPNNRLHDLPLN 366
+ ++N+ L+ GL LWT G P LP + D L+
Sbjct: 254 STVETERNNS-----LKINYSGL----------LWTAGLSPCRLPFI--------DHLLD 290
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
+ + ++ L +K + IF +GD D P P++AQVA QQ N+ +
Sbjct: 291 ENKKIKVNKFLQIKEYQNIFFVGDIVFCEDV---PFPSSAQVAMQQGSLTAQNIISLRKG 347
Query: 427 RPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 486
L F+F++LGEM+ LG +A+++ GVTL G + R AYL+R+P
Sbjct: 348 NKLKSFQFEDLGEMLSLGIGNASITGY---GVTLAGSLASKIRHFAYLMRMP-------- 396
Query: 487 GVSWLTKSA 495
G S KSA
Sbjct: 397 GFSLFLKSA 405
>gi|298491788|ref|YP_003721965.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase ['Nostoc
azollae' 0708]
gi|298233706|gb|ADI64842.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase ['Nostoc
azollae' 0708]
Length = 455
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 194/436 (44%), Gaps = 61/436 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+GGGF GL+TAL L + V+L+D+++RF FKP+LYE GE+++ ++
Sbjct: 7 QTVIVGGGFTGLFTALHLA----HEHYPRSVILIDKNKRFCFKPLLYEYFDGEMNSSQVV 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P F++LL +GV F +D V+ + H V L SG +Y LVL+LG
Sbjct: 63 PHFSELLKCSGVIFVQDIVQSID-------------LHQSEVELASGNSYKYSNLVLALG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF--ERLEEK----------GIV 248
+ V GA E AFPF T DA +DR L + ++ E +E++ G
Sbjct: 110 SVTGYPHVEGAKENAFPFWTQADAIALDRHLRDCLQKAIQTEDVEQRRKLLTVVIVGGGP 169
Query: 249 QAINVETTICP-----TGTPGNREAALKVLSARKVQLVL-GYFVRCIRRVGEFEASVKQP 302
+ + T+ G G A ++V+ Q +L G +R + E E +
Sbjct: 170 SGVEMAATLADFLPHWYGVLGGSSAEIRVILLNHGQKILDGDINDPLRPIAETELQKRTV 229
Query: 303 ESGAIPNIAA---DKNSDKYILELQPAIKGLESQIFEADLVLWTVGS--KPLLPHVEPPN 357
E G I A N+ +Y + ++ L + +WT G+ PL+ + P
Sbjct: 230 EIGIILEAEATVVHPNAVEY--KSHGEVRKLPTYT-----TIWTAGTSTHPLIQDLPIPQ 282
Query: 358 NR--LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
H PL T+ + P +FA GD +A+++SS LP TAQVA+Q
Sbjct: 283 EHRDHHRRPL-------VTPTMQLLDFPEVFAGGDCAAVQNSS---LPPTAQVAYQHGAN 332
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
NL A + P + G M+ LG NDAA + + G H R+ YL
Sbjct: 333 IARNLTALALGKDPKPVKVDIRGTMLKLGLNDAAA--NLFNIFEVAGEPAHLIRQGTYLT 390
Query: 476 RLPTDEHRLKVGVSWL 491
LPT H K WL
Sbjct: 391 LLPTPIHNFKATTEWL 406
>gi|67922783|ref|ZP_00516283.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Crocosphaera watsonii WH 8501]
gi|67855342|gb|EAM50601.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Crocosphaera watsonii WH 8501]
Length = 412
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 127/430 (29%), Positives = 202/430 (46%), Gaps = 49/430 (11%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLL-VDQSERFVFKPMLYELLSGEVDAWEI 139
R ++GGGF GL+T L L K PQ L +D + FVF P+L+EL++GE+ ++
Sbjct: 3 RTIVVGGGFVGLFTVLHL-----YHHKYPQSLFFIDNKDHFVFNPLLFELMTGEMTPDQV 57
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P + +LL + + F +D+V + D L V L S + +YD LVL+L
Sbjct: 58 CPLYRELLKGSPITFLEDQVTQI---DLL----------EKKVYLASDIHYDYDNLVLAL 104
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG----IVQAI--NV 253
G + V GA E+AFPF T EDA + + L + ++ + +E + AI V
Sbjct: 105 GRKAGFFRVEGAQEYAFPFKTKEDAETLRQHLQQCLKKASQTEDETTRKTLLTFAIVGGV 164
Query: 254 ETTICPTGTPGNREAA-LKVL--SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIP-- 308
T I GT G+ A + L SA+++++++ + + + G+ +++ S A
Sbjct: 165 PTGIEMAGTLGDLLANWYQKLDQSAQEIRILIINRPQELLQ-GDINVHLREAVSQAFAKS 223
Query: 309 NIAADKNSDKYILELQPAIKGLESQ----IFEADLVLWTVG--SKPLLPHVE-PPNNRLH 361
+I+ + + ++ P E E + +W+ G + PL+ ++ P NR
Sbjct: 224 SISIELILGASVTKVTPDSVTYEQNGQTLTIETNTTIWSAGTATNPLIENLAISPENR-- 281
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 421
G + TL + P +FA GD + L S PLPATAQVA+QQ NL
Sbjct: 282 ----TKNGSLKVLPTLQLPEFPEVFAAGDCTML---SSDPLPATAQVAYQQGKAIAHNLN 334
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
A I L P + + G MM LG + + + + G GH R+ YL LPT
Sbjct: 335 AMIKGHSLTPAQVKLRGSMMKLGIEKSVA--NIFDRFEVTGHSGHLIREGTYLQLLPTPI 392
Query: 482 HRLKVGVSWL 491
H KV +W+
Sbjct: 393 HDFKVTTNWI 402
>gi|126658973|ref|ZP_01730115.1| type 2 NADH dehydrogenase [Cyanothece sp. CCY0110]
gi|126619771|gb|EAZ90498.1| type 2 NADH dehydrogenase [Cyanothece sp. CCY0110]
Length = 473
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 126/449 (28%), Positives = 187/449 (41%), Gaps = 62/449 (13%)
Query: 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
I+GGGF GL+TAL L + ++L+D ERFVFKP+LYE L+GE+ ++ P
Sbjct: 9 IIVGGGFVGLFTALHLSHRHYPHP----IILIDPQERFVFKPLLYEYLTGEMQDEQVFPS 64
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
+ +LL + V F +D V + + L SGL Y LVL +G
Sbjct: 65 YKELLEGSNVTFVQDTVTTIELQQQ-------------QITLASGLNYHYRHLVLGVGNI 111
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR--NFERLEEKGIVQAINVETTICPT 260
GA E AFPF T EDA ++R L + ++ E +E+ + I V P+
Sbjct: 112 QGYFGTEGAKENAFPFRTQEDAINLERHLRDCLQKACQTENAQERDRLLTIAV-VGAGPS 170
Query: 261 GTP-----------------GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPE 303
G GN + VL +++ G +R E +++
Sbjct: 171 GVEMAATLADLLPSWYGKLGGNIQKIKIVLINHGTEILSGDVNAHLR-----ETALEALN 225
Query: 304 SGAIP--------NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
S ++P IA D N+ Y + I+ L +Q +WT G+ P +E
Sbjct: 226 SRSVPVALRLGVKVIAVDANNLNYQQKDHQDIEQLSTQT-----TIWTAGTA-TNPLIES 279
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ L D N G TL + P +FA GD + + + P P AQ+A+QQ
Sbjct: 280 LGDSLGDHK-NKHGLPFVTSTLQLSEFPEVFAAGDCAVVEE---HPFPPVAQIAYQQGAD 335
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
NL A + L P G +M LG N+ E + + G G R YL
Sbjct: 336 IADNLMALSQGKKLQPADPSMRGTLMKLGINNGVA--DLFEKIQVTGKAGDLIRNGTYLE 393
Query: 476 RLPTDEHRLKVGVSWLTKSAIDSVALLQS 504
LPT H K +WLT ++ Q+
Sbjct: 394 LLPTPVHNFKATTNWLTDEIFHHHSVPQT 422
>gi|33866697|ref|NP_898256.1| NADH dehydrogenase, transport associated [Synechococcus sp. WH
8102]
gi|33633475|emb|CAE08680.1| putative NADH dehydrogenase, transport associated [Synechococcus
sp. WH 8102]
Length = 382
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 189/444 (42%), Gaps = 89/444 (20%)
Query: 72 YTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLS 131
T P + ++GGGF GL++AL + + ++P VLL++ +RF+F+P+LYELLS
Sbjct: 1 MTTPLSSPETVVVIGGGFAGLFSALAVSERL---PERP-VLLIEPRDRFLFQPLLYELLS 56
Query: 132 GEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE 191
E+ WE+AP + LL++ G+ + +DRV ++ +N T L +
Sbjct: 57 SELQGWEVAPTYRQLLSSRGICWLQDRVI------NIDLNNQELTTAASGAL-------Q 103
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN------------- 238
+ LVL+ G E VPG E A F L D + + EL +R
Sbjct: 104 WGDLVLATGTELNDFGVPGVREHACSFRDLNDVAHLRALVRELNKRREPDAAVAIIGAGP 163
Query: 239 ---------FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 289
+ L+ + I I P NRE A L R V L L V +
Sbjct: 164 TGVELACKLADMLDGAARIHLIERGDGILPNSASFNRERAAAALERRDVCLHLNTAVTEV 223
Query: 290 R--RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 347
RV F+ P SG I W+ GS+
Sbjct: 224 HSDRV-RFKDGTLLPHSGLI----------------------------------WSAGSR 248
Query: 348 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 407
P +P + P P +A+G + L + GH ++ LGD S P PATAQ
Sbjct: 249 PTVPEIRPD-------PGHAKGPLNIGQDLRLLGHQHVYVLGDCG---RCSVEPWPATAQ 298
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 467
VA QQ + L A N++ PF+FQ+ GEM+ LG DA ++ G+TL GP+
Sbjct: 299 VAMQQGEAVAAALQAISNNQEPKPFQFQDRGEMLSLGIGDATLTGL---GITLAGPLAFK 355
Query: 468 ARKLAYLIRLPTDEHRLKVGVSWL 491
R+ YL RLP L+ +WL
Sbjct: 356 IRRATYLTRLPGLSLGLRSAGAWL 379
>gi|416396972|ref|ZP_11686523.1| NADH dehydrogenase [Crocosphaera watsonii WH 0003]
gi|357262854|gb|EHJ11932.1| NADH dehydrogenase [Crocosphaera watsonii WH 0003]
Length = 412
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 199/430 (46%), Gaps = 49/430 (11%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLL-VDQSERFVFKPMLYELLSGEVDAWEI 139
R ++GGGF GL+T L L K PQ L +D + FVF P+L+EL++GE+ ++
Sbjct: 3 RTIVVGGGFVGLFTVLHL-----YHHKYPQSLFFIDNKDHFVFNPLLFELMTGEMTPDQV 57
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P + +LL + + F +D+V + D L V L S + +YD LVL+L
Sbjct: 58 CPLYRELLKGSPITFLEDQVTQI---DLL----------EKKVYLASDIHYDYDNLVLAL 104
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE----- 254
G + V GA E+AFPF T EDA + + L + ++ + +E +
Sbjct: 105 GRKAGFFRVEGAQEYAFPFKTKEDAETLRQHLQQCLKKASQTEDETTRKTLLTFAIVGGG 164
Query: 255 -TTICPTGTPGNREAA-LKVL--SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI--P 308
T I GT G+ A + L SA+++++++ + + + G+ +++ S A
Sbjct: 165 PTGIEMAGTLGDLLANWYQKLDQSAQEIRILIINRPQELLQ-GDINVHLREAVSQAFAKS 223
Query: 309 NIAADKNSDKYILELQPAIKGLESQ----IFEADLVLWTVG--SKPLLPHVE-PPNNRLH 361
+I+ + + ++ P E E + +W+ G + PL+ ++ P NR
Sbjct: 224 SISIELILGASVTKVTPDSVTYEQNGQTLTIETNTTIWSAGTATNPLIENLAISPENR-- 281
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 421
G + TL + P +FA GD + L S PLPATAQVA+QQ NL
Sbjct: 282 ----TKNGSLKVLPTLQLPEFPEVFAAGDCTML---SSDPLPATAQVAYQQGKAIAHNLN 334
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
A I L P + + G MM LG + + + + G GH R+ YL LPT
Sbjct: 335 AMIKGHSLTPAQVKLRGSMMKLGIEKSVA--NIFDRFEVTGHSGHLIREGTYLQLLPTPI 392
Query: 482 HRLKVGVSWL 491
H KV +W+
Sbjct: 393 HDFKVTTNWI 402
>gi|72383282|ref|YP_292637.1| NADH dehydrogenase, FAD-containing subunit [Prochlorococcus marinus
str. NATL2A]
gi|72003132|gb|AAZ58934.1| NADH dehydrogenase, FAD-containing subunit [Prochlorococcus marinus
str. NATL2A]
Length = 390
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/390 (25%), Positives = 175/390 (44%), Gaps = 74/390 (18%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
++L+DQS RF+FKP+LYELLSGE+ WE+AP+++ L + G F ++ C + G+
Sbjct: 36 IILIDQSPRFLFKPLLYELLSGELQLWEVAPKYSALASELGFIFLEE-----CVVEVDGL 90
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
+ + SG V Y LV+S G ++ E+A+ FS+L D R+
Sbjct: 91 ERKLITS--------SGTEVTYSQLVISTGVTTDFSLLRNLKEYAYGFSSLNDLVRIQEL 142
Query: 231 L----------------------SELERRNFERLEEKGIVQAINVETTICPTGTPGNREA 268
+ EL + + + + + ++ I NRE
Sbjct: 143 IISINNSSNHSDPLIIAGAGPTGVELACKLSDLVNNRVDIYLVDKGNKILSKSKSFNREK 202
Query: 269 ALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIK 328
A+ ++ R +++ L ++++ I E ++ + + ++N+ L+
Sbjct: 203 AIDAIAERNIKIYLEHYIQSIN-----ENIIE------LSTVETERNNS-----LKINYS 246
Query: 329 GLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFAL 388
GL LWT G + P + D L+ + + ++ L +K + IF +
Sbjct: 247 GL----------LWTAG-------LSPCRLQFIDHLLDENKKIKVNKFLQIKEYQNIFFV 289
Query: 389 GDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
GD D P P++AQVA QQ N+ + L F+F++LGEM+ LG +A
Sbjct: 290 GDIVFCEDD---PFPSSAQVAMQQGFLTAQNIISLRKGNKLKSFQFEDLGEMLSLGIGNA 346
Query: 449 AVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
+++ GVTL G + R AYL+R+P
Sbjct: 347 SITGY---GVTLAGSLAFKIRHFAYLMRMP 373
>gi|260436823|ref|ZP_05790793.1| NADH dehydrogenase, fad-containing subunit [Synechococcus sp. WH
8109]
gi|260414697|gb|EEX07993.1| NADH dehydrogenase, fad-containing subunit [Synechococcus sp. WH
8109]
Length = 425
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 118/427 (27%), Positives = 188/427 (44%), Gaps = 96/427 (22%)
Query: 92 LYTALRLESLVWQDDKKPQ--VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLAN 149
L+TAL L+ ++P ++L++ +RF+F+P+LYELLS E+ +WE+APR+ D L N
Sbjct: 65 LFTALALQR------RQPNCPIVLIEPRDRFLFQPLLYELLSDELQSWEVAPRY-DQLLN 117
Query: 150 TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209
G+ + KD V +G++ ++ L SG + + LVL+ G++ +P
Sbjct: 118 NGICWIKDSV--------VGID-----QTSQSIELASGDHLGWSQLVLATGSKANDFGIP 164
Query: 210 GAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGI---------------------- 247
G E + F L D R+ + L+ L + +R E G+
Sbjct: 165 GVKEHSSGFRDLNDVSRLKQWLNSL---HHQRDGEAGLIIVGAGPTGVELACKLADLIDG 221
Query: 248 ---VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 304
++ + + I P + NRE A L + G V+ V E ++S
Sbjct: 222 AASIRLVEMGDEILPGSSAFNRERAQAALERK------GVVVQLNTSVSEVKSSTAVLAD 275
Query: 305 GAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 364
GA+ ++WT GS+P +P + P P
Sbjct: 276 GAVLRHVG---------------------------LIWTAGSRPSIPAISP-------TP 301
Query: 365 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 424
+ RG+ D+ L + G FALGD SA G P PA+AQVA QQ D +
Sbjct: 302 VLERGRLAVDDDLRLVGCANTFALGDLSA---RPGSPWPASAQVAMQQGDATAAAIAKLR 358
Query: 425 NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 484
+ PF+F++ GEM+ LG +A ++ G+TL GP+ R+ YL RLP L
Sbjct: 359 VEEEPQPFQFEDRGEMLSLGVGEATLTGM---GLTLAGPLAFQLRRATYLTRLPGLSLGL 415
Query: 485 KVGVSWL 491
+ +WL
Sbjct: 416 RSAGAWL 422
>gi|390564740|ref|ZP_10245504.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Nitrolancetus hollandicus Lb]
gi|390172013|emb|CCF84830.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Nitrolancetus hollandicus Lb]
Length = 456
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 116/441 (26%), Positives = 199/441 (45%), Gaps = 70/441 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI ILGGGF G+Y AL L+ + D +V +V++ FVF P+L E+LSG ++ +
Sbjct: 16 RILILGGGFAGVYAALNLQRTL--ADLPAEVAIVNRENFFVFYPLLPEILSGSIETESVL 73
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGV---------NGPMACTHGGTVLLESGLIVE 191
+ ++L+ P L V + + HG + +
Sbjct: 74 ----------------NPIRLVVPKATLYVGEVTSIDLAHQRVEIRHGLYRHYQEPATLY 117
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFERLEEKGIVQA 250
YD L+L+LG P+ +PG AE+AF L A + L + LE+ + E ++
Sbjct: 118 YDHLILALGGVPRTAGIPGLAEYAFDVQRLSHAFALRNHLIDTLEQADIETDPDR----K 173
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA--IP 308
+ T + G E A + LV G +R + + + V SG IP
Sbjct: 174 RQLLTFVIAGGGANGVEVAAHIRD-----LVYG-AIRYYQNIEPADLHVILIHSGNRLIP 227
Query: 309 NIAADKNS---------------DKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPH 352
++ + D+ + ++P A+ + ++ AD ++ +VG P
Sbjct: 228 DLPSRLGYYAERLLRRRGIEILFDRRVSRVEPDAVYLTDGEVIRADTIVGSVGVMP---- 283
Query: 353 VEPPNNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVA 409
N + +LP+ + RG + L V G+P ++ALGD++ + D +G+P P TAQ A
Sbjct: 284 ----NPMVANLPVPHDPRGAIAVNNDLSVPGYPNVWALGDNAFVVDPYTGKPYPLTAQTA 339
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
++A N+ A++ PL PF ++ +G M+ LG A +++ G+T G I
Sbjct: 340 VREAKLVARNIAASLRGEPLKPFTYRTIGAMVSLGHRSAV---AYIRGLTFSGFIAWWLY 396
Query: 470 KLAYLIRLPTDEHRLKVGVSW 490
+ YL++LP + RL+V W
Sbjct: 397 RTYYLLQLPRWDKRLRVVFDW 417
>gi|352096090|ref|ZP_08957037.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Synechococcus sp. WH 8016]
gi|351677446|gb|EHA60595.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Synechococcus sp. WH 8016]
Length = 382
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 126/435 (28%), Positives = 187/435 (42%), Gaps = 80/435 (18%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I ++GGGF GL TAL L + +P +LL++ +F+F P+LYELLSGE+ +WE+AP
Sbjct: 6 IIVVGGGFAGLTTALALSN----QRPRPPLLLIEPRHQFLFLPLLYELLSGEMKSWEVAP 61
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ LL + DRV +N T ++ G +++Y LVL+ G+
Sbjct: 62 SYESLLQGRRIPHLDDRVT--------SIN-----TAQKSLQTSRGQVLKYSQLVLATGS 108
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF---------------------- 239
EP + G E A F +L D + ++ L R
Sbjct: 109 EPDDFGITGVKEHALTFHSLADLPLLKERVHSLRNRASKDGALVIVGAGATGVELACKLS 168
Query: 240 ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
+ L+ + + + ++ NRE A K L R V L RV A+
Sbjct: 169 DMLDGSANIHLVELGDSVLSRSRAFNREQARKALDQRGVHRHLNT------RVTSVSANA 222
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
Q +K Q D ++WT G+KP+LP + P R
Sbjct: 223 VQ------------------------LLKNDRPQSLNHDGLIWTAGTKPVLPPLTPTPPR 258
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
RG DE L + P + LGD + D+ P P +AQ A QQ A
Sbjct: 259 -------ERGLLCVDEGLQLTTDPNVLVLGDVACHNDAE-TPWPRSAQAALQQGTAAART 310
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
L A D+P+ F FQ+LGEM+ LG DA+++ G+TL GP+ + R+L YL R+P
Sbjct: 311 LQAIRMDKPVPGFHFQDLGEMLSLGIGDASITGM---GLTLAGPLAYRMRRLTYLARMPG 367
Query: 480 DEHRLKVGVSWLTKS 494
L+ +WL S
Sbjct: 368 LSLGLRSAGAWLVHS 382
>gi|33239548|ref|NP_874490.1| NADH dehydrogenase, FAD-containing subunit [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33237073|gb|AAP99142.1| NADH dehydrogenase, FAD-containing subunit [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 394
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/410 (24%), Positives = 172/410 (41%), Gaps = 80/410 (19%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
++P ++L++ S RF F P+ YELLSGE++ WE+AP + LLA+ G+ V D
Sbjct: 32 QRPPIILIEPSSRFNFLPLFYELLSGELEVWEVAPFYKTLLASKGIVLIDQFV------D 85
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
++ ++ + T G V ++Y LV++ G++ + G E F+ +D
Sbjct: 86 NIDLDKEVVSTSAGQV-------IKYGQLVIATGSKLNSFGISGVNEHCLKFNKYQDVLT 138
Query: 227 VDRKLSELERRNFER----------------------LEEKGIVQAINVETTICPTGTPG 264
+ R + L N R ++ + + I V I P G
Sbjct: 139 LKRVIRRLNHSNENRQNLVIVGAGATGVELACKVADLVDARTEIHLIEVGENILPKGRSF 198
Query: 265 NREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL 323
N+E + + R + L L V + + E ++ KQ
Sbjct: 199 NQEQIQEAIRKRSINLHLNTNVLKVLENNVEIQSLSKQ---------------------- 236
Query: 324 QPAIKGLESQIFEADL--VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKG 381
SQ F + ++WT G K +P P L G+ D L + G
Sbjct: 237 -------HSQPFSLNHSGIIWTAGVKSAIPSGLPE-------TLIRNGRVAIDSKLQIIG 282
Query: 382 HPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 441
+F++GD + +++ P TAQVA QQ + N+ AA + L PF F + GEM+
Sbjct: 283 RNNVFSIGDMAIDQEN---PCLGTAQVAMQQGEHLAKNVIAARQGKDLTPFEFVDRGEML 339
Query: 442 ILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+G +A ++ G+T+ G I R++AYL + P ++ SWL
Sbjct: 340 SMGIGEATITGM---GLTISGSIAFKMRRMAYLSKFPNLFLSIRSAGSWL 386
>gi|116071421|ref|ZP_01468690.1| putative NADH dehydrogenase, transport associated protein
[Synechococcus sp. BL107]
gi|116066826|gb|EAU72583.1| putative NADH dehydrogenase, transport associated protein
[Synechococcus sp. BL107]
Length = 382
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 179/408 (43%), Gaps = 89/408 (21%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
V+L++ + F+F+P+LYELLS E+ WE+AP+++ L+++ G+ + +D V + S+H
Sbjct: 35 HVVLIEPRKEFLFQPLLYELLSHELQEWEVAPQYSQLVSHNGICWLQDEVLSIDRSNH-- 92
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
T+ SG + + LV++ G++P +PG E + F L D + +
Sbjct: 93 -----------TLQTRSGERIPWRQLVIATGSQPNDFGIPGVKEHSRGFRNLSDVRELRQ 141
Query: 230 KLSEL--ERRNFERLEEKGI--------------------VQAINVETTICPTGTPGNRE 267
++ +L +RR L G + I +I P + NRE
Sbjct: 142 RIQDLVHQRRADAALAIVGAGPTGVELSCKLADLLNGTARIHLIEKGDSILPNSSAFNRE 201
Query: 268 AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI 327
A L + V L L V A +D+ +
Sbjct: 202 RASAALERKDVCLHLNTDV-------------------------ARVEADRVVFA----- 231
Query: 328 KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFA 387
KG E E ++WT GS+ LP V+P LP + RG+ + L ++ +FA
Sbjct: 232 KGEE---IEHQGLIWTAGSQVNLPSVQP-------LPKSHRGRLTINADLRLQDSCDVFA 281
Query: 388 LGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 447
+GD ++ D P PA AQVA QQ + G + A F FQ+ GEM+ LG D
Sbjct: 282 IGDIASNGD---HPAPANAQVAMQQGEAVGDAIAALQAGEEPQTFEFQDRGEMLSLGIGD 338
Query: 448 AAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGV----SWL 491
A ++ G+TL GP+ R+ YL R+P L VGV +WL
Sbjct: 339 ATLTGL---GITLAGPLAFQLRRATYLTRMPG----LSVGVRSAGAWL 379
>gi|383323925|ref|YP_005384779.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383327094|ref|YP_005387948.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492978|ref|YP_005410655.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438246|ref|YP_005652971.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|339275279|dbj|BAK51766.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|359273245|dbj|BAL30764.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359276415|dbj|BAL33933.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279585|dbj|BAL37102.1| type 2 NADH dehydrogenase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407960171|dbj|BAM53411.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
Length = 487
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 122/452 (26%), Positives = 190/452 (42%), Gaps = 81/452 (17%)
Query: 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
I+GGGF GL+TAL L ++LV+ FVFKPMLYELL+ E+ + P
Sbjct: 12 VIIGGGFVGLFTALHLR----HHQHAGPIVLVEPQANFVFKPMLYELLTEELPESVVCPS 67
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
+ LLA++G+ + RV + + ++L+SG YD+LVL++G+
Sbjct: 68 YEKLLADSGIDIVQARVADVQLKEK-------------RLVLDSGQEQHYDYLVLAVGSV 114
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRV--------DRKLSELERRNFERLEEKGIVQAINVE 254
GAAE AF F + +A + ++ L+ ++ ERL IV A
Sbjct: 115 QGYLGAQGAAENAFAFRSQTEAIALRDHLKACLEKSLTTADQAEKERLLTVAIVGA---- 170
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 314
P G ++A L+ ++V + + + + G + A D
Sbjct: 171 ---GPAGVE---------MAATLADLLPSWYVPMGGNINDLKIYLVNHAPGIL---AGDA 215
Query: 315 NSD--------------KYILELQPAIKGL-------------ESQIFEADLVLWTVGS- 346
NS L+L +K + E + + +WT G+
Sbjct: 216 NSGLKRCALEELQARTIPVTLKLGVGVKSVTPESLQFVETGEEELRHLDTGTTIWTAGTA 275
Query: 347 -KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 405
PLL ++ ++ L+ GQ TL + P++FA GD ++D+ P PA
Sbjct: 276 VNPLLKTLK---EQIPAEELDRHGQPLVTSTLQLPSFPQVFAAGDCVTVKDN---PKPAL 329
Query: 406 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 465
AQ+A+QQ NL A N +PL+ Q G +M LG N+ + + V + G G
Sbjct: 330 AQIAYQQGAAIAKNLMAVHNGKPLVSPDPQLRGTLMKLGLNNGVA--NLFDRVRIQGKAG 387
Query: 466 HSARKLAYLIRLPTDEHRLKVGVSWLTKSAID 497
R YL LPT H K WL + ID
Sbjct: 388 DLLRNATYLELLPTPLHNFKSTTQWLAEETID 419
>gi|354615463|ref|ZP_09033230.1| NADH dehydrogenase (ubiquinone) [Saccharomonospora paurometabolica
YIM 90007]
gi|353220179|gb|EHB84650.1| NADH dehydrogenase (ubiquinone) [Saccharomonospora paurometabolica
YIM 90007]
Length = 431
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 122/434 (28%), Positives = 196/434 (45%), Gaps = 58/434 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE-I 139
RI I+GGG+ GLYTALRL+ + + +V +V+ V++P+L E+ SG ++ +
Sbjct: 4 RIVIVGGGYVGLYTALRLQQCLRPGEA--EVTVVNPENFMVYRPLLPEVASGTLEPRHAV 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P A L G +F + + P A L +EYD LVL L
Sbjct: 62 VPLRAVL---RGTRFIAGTLTGIDTDRRTATVEPTAGPP---------LTLEYDELVLGL 109
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE-----------RR---------N 238
GA KL +PG AE F++L +A + DR L +LE RR
Sbjct: 110 GATSKLLPIPGLAEHGIGFNSLAEAAHMRDRVLGQLEIAAASDDPELRRRALTFVFVGGG 169
Query: 239 FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
+ +E +Q + V+ G P ++ + V +LG + + E +
Sbjct: 170 YTGVEAVAELQDMAVDVL---EGFPEIDRTEMRWVLVEAVDRILGTVTPDLAELATTELT 226
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
+ + I ++++ +L L K FEAD ++W G++P
Sbjct: 227 ARGID---IRLNTLLESAEDGVLALSDGTK------FEADTLVWVAGTRP-----HTIVG 272
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAG 417
+L LP++ RG+ D+T+ V GHP I++ GD +A+ D G P TAQ A +QA G
Sbjct: 273 QL-GLPVDDRGRLVVDDTMRVNGHPNIWSAGDCAAVPDPEKGGTCPPTAQHAVRQAQQLG 331
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
NL + R + PFR+ + GE + LG+N A V G ++G + + R+ Y ++
Sbjct: 332 DNLLYTVRGRSVKPFRYNSRGEFVTLGKNKAV---GEVLGRKVNGSLAWTLRRAYYATQI 388
Query: 478 PTDEHRLKVGVSWL 491
PT ++V WL
Sbjct: 389 PTWNRTVRVLGDWL 402
>gi|16332182|ref|NP_442910.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|451816334|ref|YP_007452786.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|1653811|dbj|BAA18722.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|451782303|gb|AGF53272.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
Length = 524
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 122/452 (26%), Positives = 190/452 (42%), Gaps = 81/452 (17%)
Query: 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
I+GGGF GL+TAL L ++LV+ FVFKPMLYELL+ E+ + P
Sbjct: 49 VIIGGGFVGLFTALHLR----HHQHAGPIVLVEPQANFVFKPMLYELLTEELPESVVCPS 104
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
+ LLA++G+ + RV + + ++L+SG YD+LVL++G+
Sbjct: 105 YEKLLADSGIDIVQARVADVQLKEK-------------RLVLDSGQEQHYDYLVLAVGSV 151
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRV--------DRKLSELERRNFERLEEKGIVQAINVE 254
GAAE AF F + +A + ++ L+ ++ ERL IV A
Sbjct: 152 QGYLGAQGAAENAFAFRSQTEAIALRDHLKACLEKSLTTADQAEKERLLTVAIVGA---- 207
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 314
P G ++A L+ ++V + + + + G + A D
Sbjct: 208 ---GPAGVE---------MAATLADLLPSWYVPMGGNINDLKIYLVNHAPGIL---AGDA 252
Query: 315 NSD--------------KYILELQPAIKGL-------------ESQIFEADLVLWTVGS- 346
NS L+L +K + E + + +WT G+
Sbjct: 253 NSGLKRCALEELQARTIPVTLKLGVGVKSVTPESLQFVETGEEELRHLDTGTTIWTAGTA 312
Query: 347 -KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 405
PLL ++ ++ L+ GQ TL + P++FA GD ++D+ P PA
Sbjct: 313 VNPLLKTLK---EQIPAEELDRHGQPLVTSTLQLPSFPQVFAAGDCVTVKDN---PKPAL 366
Query: 406 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 465
AQ+A+QQ NL A N +PL+ Q G +M LG N+ + + V + G G
Sbjct: 367 AQIAYQQGAAIAKNLMAVHNGKPLVSPDPQLRGTLMKLGLNNGVA--NLFDRVRIQGKAG 424
Query: 466 HSARKLAYLIRLPTDEHRLKVGVSWLTKSAID 497
R YL LPT H K WL + ID
Sbjct: 425 DLLRNATYLELLPTPLHNFKSTTQWLAEETID 456
>gi|78213818|ref|YP_382597.1| NADH dehydrogenase, transport associated [Synechococcus sp. CC9605]
gi|78198277|gb|ABB36042.1| putative NADH dehydrogenase, transport associated [Synechococcus
sp. CC9605]
Length = 381
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 120/413 (29%), Positives = 188/413 (45%), Gaps = 68/413 (16%)
Query: 92 LYTALRLESLVWQDDKKPQ--VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLAN 149
L+TAL L+ ++P ++L++ +RF+F+P+LYELLS E+ WE+APR+ D L N
Sbjct: 21 LFTALALQR------RQPNCPIVLIEPRDRFLFQPLLYELLSDELQGWEVAPRY-DQLLN 73
Query: 150 TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209
G+ + +D V +GV+ T+ L SG + + LVL+ G++ +P
Sbjct: 74 NGICWIQDSV--------VGVD-----LTSQTIELASGDRLGWSQLVLATGSKGNDFGIP 120
Query: 210 GAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAA 269
G E + F L D R+ + L+ L + +R E G++ PTG
Sbjct: 121 GVKEHSSGFRDLSDVSRLKQWLNNLHQ---QRGEAAGLII-----VGAGPTGVE------ 166
Query: 270 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--AIP-NIAADKNSDKYILELQPA 326
L+ + L+ G ASV+ E G +P + A ++ + LE +
Sbjct: 167 ---LACKLTDLIDG------------AASVRLVEMGDEILPGSTAFNRERAQAALERKGV 211
Query: 327 IKGLESQIFEADLVLWTVGSKPLLPHV--------EPPNNRLHDLPLNARGQAETDETLC 378
+ L + + E + +LPH P + P+ RG+ D+ L
Sbjct: 212 VVQLNTSVSEVKSSTAVLADGAVLPHAGLVWTAGSSPSIPPISPTPVLERGRLAIDDDLR 271
Query: 379 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 438
+ FALGD SA G P PA+AQVA QQ D + D+ PF F++ G
Sbjct: 272 LVSSANTFALGDLSA---RPGSPWPASAQVAMQQGDATAAAIATLRMDQEPQPFEFEDRG 328
Query: 439 EMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
EM+ LG DA ++ G+TL GP+ R+ YL RLP L+ +WL
Sbjct: 329 EMLSLGVGDATLTGM---GLTLAGPLAFQLRRATYLTRLPGLSLGLRSAGAWL 378
>gi|56751322|ref|YP_172023.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 6301]
gi|81299009|ref|YP_399217.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 7942]
gi|56686281|dbj|BAD79503.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 6301]
gi|81167890|gb|ABB56230.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 7942]
Length = 478
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 114/435 (26%), Positives = 197/435 (45%), Gaps = 53/435 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + I+GGGF GL+ AL L + ++L+D +RF+F+P+L++ LSGE+ +
Sbjct: 9 KPTV-IVGGGFVGLFCALHLRHRHY----PAPIILIDPKDRFIFRPLLFDFLSGELSDEQ 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ PR+ +LL + V+F +D V + + ++ GL +Y LVL
Sbjct: 64 VWPRYEELLQGSEVEFIQDAVSAIDLVER-------------SLTTAQGLTFDYGHLVLG 110
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-----------LERRNFERLEEKGI 247
LGA PGAA++AF F + ++++ L + +RR+ + G
Sbjct: 111 LGATQGYFGTPGAADYAFAFRDRDHVVKLEQHLRQRLQKASQIHDRQQRRDLLTIAVVGA 170
Query: 248 ----VQAINVETTICP--TGTPGNREAALK-VLSARKVQLVLGYFVRCIRRVGEFEASVK 300
++ + + P G G L+ +L R +++ G + + E +
Sbjct: 171 GPSGIEMVALLADWLPLHYGRLGGDPQDLRLILVNRSPEILKGDANASLHDLVLEELQQR 230
Query: 301 QPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVE-PPN 357
Q + +A + + + + + LE V+WT G + PLL +E P +
Sbjct: 231 QMPVELLLGVAVEAVTPEGLQYRRSGTDALEQ---VRGTVIWTAGVSNNPLLSQLEIPAS 287
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
+R + G TL + G+P +FA GD + +++ +P P AQVA+QQ
Sbjct: 288 DR------DRHGMPYVLPTLQLLGYPEVFAAGDCAVVKE---QPQPGLAQVAYQQGAAIA 338
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
NL A +++PL P + G +M LG ++A + + + G G RK YL L
Sbjct: 339 HNLLALSHNQPLSPAKVSLRGTLMGLGIDNAVA--NLLNRYRVTGKPGSLLRKATYLELL 396
Query: 478 PTDEHRLKVGVSWLT 492
PT H K + WL+
Sbjct: 397 PTPLHNFKATMDWLS 411
>gi|78183962|ref|YP_376397.1| NADH dehydrogenase, transport associated [Synechococcus sp. CC9902]
gi|78168256|gb|ABB25353.1| putative NADH dehydrogenase, transport associated [Synechococcus
sp. CC9902]
Length = 382
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 109/408 (26%), Positives = 176/408 (43%), Gaps = 89/408 (21%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
+V+L++ F+F+P+LYELLS E+ WE+AP++ +L+++ G+ + +D V + S+H
Sbjct: 35 RVVLIEPRREFLFQPLLYELLSHELQEWEVAPQYNELVSHHGICWLQDEVISIDRSNH-- 92
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
++ SG + + LVL+ G++P +PG E + F L D + +
Sbjct: 93 -----------SLQTRSGDCIPWRQLVLATGSQPNDFGIPGVKEHSRGFRNLSDVRELRQ 141
Query: 230 KLSEL--ERRNFERLEEKGI--------------------VQAINVETTICPTGTPGNRE 267
++ +L +RR L G + I +I P + NRE
Sbjct: 142 RIQDLLHQRRANAALAIVGAGPTGVELSCKLADLLNGSARIHLIEKGDSILPNSSAFNRE 201
Query: 268 AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI 327
A L + V L L V A +D+ +
Sbjct: 202 RATAALERKDVCLHLNANV-------------------------ARVEADRVVFA----- 231
Query: 328 KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFA 387
E + E ++WT GS+ +P V+P LP RG L ++ +FA
Sbjct: 232 ---EGEEIEHQGLIWTAGSQAKVPSVQP-------LPQLHRGHLAVRADLRLQDSFDVFA 281
Query: 388 LGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 447
+GD++ + P PA AQVA QQ + G + A F F++ GEM+ LG D
Sbjct: 282 IGDTAM---NGEDPAPANAQVAMQQGEAVGDAIAALRAGEEPQTFEFKDRGEMLSLGIGD 338
Query: 448 AAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGV----SWL 491
A ++ G+TL GP+ R+ AYL R+P L VGV +WL
Sbjct: 339 ATLTGL---GITLAGPLAFQLRRAAYLTRMPG----LSVGVRSAGAWL 379
>gi|440197594|gb|AGB85072.1| PndS [uncultured soil bacterium]
Length = 410
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 176/407 (43%), Gaps = 64/407 (15%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
+V LV ++ F+F PMLYE LSGEV+AW IAPR+ +LL + V+ +++V G
Sbjct: 27 EVTLVSDADHFLFTPMLYEYLSGEVEAWHIAPRYDELL-DENVRLVQNQVT--------G 77
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
V+ TV L + ++YD LVL++G V GA EF+ PF L A +
Sbjct: 78 VD-----LGSQTVSLANHEPLKYDVLVLAVGGITNYVGVEGAEEFSLPFRKLAHADNLRH 132
Query: 230 KLSELERRNFERLEEKGIVQAINVETTICPTGTPGN------REAAL-------KVLSAR 276
++ + +R+ Q + E T G + + A L + L
Sbjct: 133 RMV----KALDRIPPDMPPQDVRHELTFAVVGAGASGCELSTKMADLLSDAFKRRALHGE 188
Query: 277 KVQLVLGYFVRCIRRVGE----------FEASVKQPESGAIPNIAADKNSDKYILELQPA 326
LV+ R + +G+ E+ V+ + + SD E +
Sbjct: 189 PRVLVIEMGDRVVPGMGDQIREFVEDALHESRVEVHTGTRVVKV----TSDDITFEHEGK 244
Query: 327 IKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPR 384
++ L++ V+WT G K PLL + + RG TL + H
Sbjct: 245 LESLKTAA-----VVWTGGVKMSPLLEQLNVEKTK--------RGLLVVKPTLQLAQHEN 291
Query: 385 IFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
IFALGD + D++ L TAQ+AFQQA A N+ A + F+ LGE + LG
Sbjct: 292 IFALGDIALYPDAT-PTLAGTAQLAFQQASLAAKNIKAFNAGEQMHTKHFEELGEAISLG 350
Query: 445 RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
AAV G G + AR Y RLPT HRL+VG SW
Sbjct: 351 TERAAV---LTGGKAFGGALARQARFALYTSRLPTWHHRLRVGASWF 394
>gi|345304500|ref|YP_004826402.1| NADH dehydrogenase (ubiquinone) [Rhodothermus marinus
SG0.5JP17-172]
gi|345113733|gb|AEN74565.1| NADH dehydrogenase (ubiquinone) [Rhodothermus marinus
SG0.5JP17-172]
Length = 436
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 125/445 (28%), Positives = 197/445 (44%), Gaps = 79/445 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVD 135
+ +PR+ I+G GFGGL A L + P +V+L+D+ F+P+LY++ + ++
Sbjct: 3 QDRPRVVIVGAGFGGLPLARALR-------RDPVEVVLIDRQNYHTFQPLLYQVATAGLE 55
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
EIA A G+ F R +GV+ VLLE G +++D+L
Sbjct: 56 PEEIAH------AVRGI-FQGRRNFRFVMGTVVGVDWDAQA-----VLLEDGDRIDFDYL 103
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDAC----RVDRKLSELERRNFERLEEKGIVQAI 251
VL+ GA + GAAE++FP TLEDA + R+ E +R + ER+ E G++ +
Sbjct: 104 VLAAGATTNYFGIEGAAEYSFPLKTLEDAIALRSHIIRQFEEADR-HPERIRE-GLLNIV 161
Query: 252 NVETTICPTGT---------------------PGNRE-----AALKVLSARKVQLVLGYF 285
V PTG P NR AL + A + + Y
Sbjct: 162 VVGG--GPTGIEMAGALVEWFELVFRKDYPHLPMNRARVLLVEALDTVLASYDERLQQYA 219
Query: 286 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 345
R +RR G E + P + P+ ++ ++ V+W G
Sbjct: 220 RRQLRRRG-VELHLGDPVARVTPDAVYLQSGER----------------IPTRTVIWAAG 262
Query: 346 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 405
+ P +RL LP G+ E + L V GHP +F +GD +A RD GR P
Sbjct: 263 VRAC-----PLADRL-GLPQARGGRIEVEADLRVPGHPNVFVIGDLAASRDEQGRLHPQM 316
Query: 406 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 465
A VA Q A + + + PFR+++ G M +GR+ AAV+ G+ L GP+
Sbjct: 317 APVAIQGARHVARQIRRLLQGQETEPFRYRHRGMMATIGRH-AAVA-ELKGGLRLTGPLA 374
Query: 466 HSARKLAYLIRLPTDEHRLKVGVSW 490
A +L++L +RL+V ++W
Sbjct: 375 WFAWLALHLVQLIGFRNRLQVLINW 399
>gi|307106170|gb|EFN54417.1| hypothetical protein CHLNCDRAFT_135776 [Chlorella variabilis]
Length = 175
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 35/154 (22%)
Query: 372 ETDETLCVKGHPRIFALGDSSALRDSSGRP-LPATAQVAFQQADFAGWNLWAAINDRPLL 430
+TD +L V HPR+FALGD S +P LPATAQVAFQQAD+ WNLWAAIN +P+L
Sbjct: 2 QTDASLRVLRHPRVFALGDISVSSGGREQPALPATAQVAFQQADYVAWNLWAAINAKPML 61
Query: 431 PFRFQNLGEMMILGRNDAAV-------------------------------SPSF---VE 456
F +Q+LG+MM LG AV S S+ +
Sbjct: 62 SFSYQHLGDMMSLGTTSGAVTLPIPVPPQLSAAVQAAGPLGQLLKAAGVKLSGSYGGGAD 121
Query: 457 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
GVTL+GP+ + R+ AYL R PT E +L+V W
Sbjct: 122 GVTLEGPLAAAVRRAAYLYRQPTLEQQLRVAGGW 155
>gi|381164705|ref|ZP_09873935.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
azurea NA-128]
gi|379256610|gb|EHY90536.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
azurea NA-128]
Length = 431
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 116/435 (26%), Positives = 193/435 (44%), Gaps = 60/435 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG+ GLYTAL+L+ + + +V +V+ V++P+L E+ SG ++
Sbjct: 4 RILIIGGGYVGLYTALKLQRGLRPGEA--EVTVVNPENYMVYRPLLPEVASGTLEPRHAV 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+L +F + L S P+A L ++YD LVL+LG
Sbjct: 62 VPLRAVLRKA--RFLSGALTALDTSTSTATVRPIAGPE---------LTLDYDELVLALG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE-----------RR---------NF 239
A KL VPG E F++L +A + D L +LE RR +
Sbjct: 111 ATSKLLPVPGLVENGVGFNSLAEAAHLRDHVLRQLEIASATTDPKLRRRALTFVFVGGGY 170
Query: 240 ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
+E +Q + ++ G P + ++ + + +LG + + E +
Sbjct: 171 TGVEAIAELQDMAIDVL---EGYPDVDRSEMRWILVEAMDRILGTVSADLAELATTELTA 227
Query: 300 KQPE--SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
+ + +G + A D +L+L K +D ++W G++P +P
Sbjct: 228 RGIDIRTGTLLESAEDG-----VLQLSDGAK------LASDTLVWVAGTRP-----QPIL 271
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFA 416
L LP++ RG+ D+T+ V GHP I++ GD +A+ D G P TAQ A +QA
Sbjct: 272 GEL-GLPVDDRGRLVVDDTMRVNGHPNIWSAGDCAAVPDPEQGGTCPPTAQHAVRQAQQL 330
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
G NL + + PFR+ + GE + LG+N A V G +DG + + R+ Y +
Sbjct: 331 GDNLLLTLRGHAVKPFRYNSRGEFVTLGKNKAV---GEVLGHKVDGSLAWALRRGYYATQ 387
Query: 477 LPTDEHRLKVGVSWL 491
+PT +V WL
Sbjct: 388 IPTWNRTARVLCDWL 402
>gi|418463518|ref|ZP_13034524.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
azurea SZMC 14600]
gi|359732897|gb|EHK81903.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
azurea SZMC 14600]
Length = 431
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 116/435 (26%), Positives = 193/435 (44%), Gaps = 60/435 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG+ GLYTAL+L+ + + +V +V+ V++P+L E+ SG ++
Sbjct: 4 RILIIGGGYVGLYTALKLQRGLRPGEA--EVTVVNPENYMVYRPLLPEVASGTLEPRHAV 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+L +F + L S P+A L ++YD LVL+LG
Sbjct: 62 VPLRAVLRKA--RFLSGALTALDTSTSTATVQPIAGPE---------LTLDYDELVLALG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE-----------RR---------NF 239
A KL VPG E F++L +A + D L +LE RR +
Sbjct: 111 AMSKLLPVPGLVENGVGFNSLAEAAHLRDHVLRQLEIASATTDPKLRRRALTFVFVGGGY 170
Query: 240 ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
+E +Q + ++ G P + ++ + + +LG + + E +
Sbjct: 171 TGVEAIAELQDMAIDVL---EGYPDVDRSEMRWILVEAMDRILGTVSADLAELATTELTA 227
Query: 300 KQPE--SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
+ + +G + A D +L+L K +D ++W G++P +P
Sbjct: 228 RGIDIRTGTLLESAEDG-----VLQLSDGAK------LASDTLVWVAGTRP-----QPIL 271
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFA 416
L LP++ RG+ D+T+ V GHP I++ GD +A+ D G P TAQ A +QA
Sbjct: 272 GEL-GLPVDDRGRLVVDDTMRVNGHPNIWSAGDCAAVPDPEQGGTCPPTAQHAVRQAQQL 330
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
G NL + + PFR+ + GE + LG+N A V G +DG + + R+ Y +
Sbjct: 331 GDNLLLTLRGHAVKPFRYNSRGEFVTLGKNKAV---GEVLGHKVDGSLAWALRRGYYATQ 387
Query: 477 LPTDEHRLKVGVSWL 491
+PT +V WL
Sbjct: 388 IPTWNRTARVLCDWL 402
>gi|375099282|ref|ZP_09745545.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
cyanea NA-134]
gi|374660014|gb|EHR59892.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
cyanea NA-134]
Length = 432
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/433 (26%), Positives = 194/433 (44%), Gaps = 56/433 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG+ GLYTALRL+ + + +V +V+ V++P+L E+ SG ++
Sbjct: 4 RILIVGGGYVGLYTALRLQRGLRPGEA--EVTVVNPENYMVYRPLLPEVASGTLEPRHAV 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+L T +F + L + PMA L +EYD LVL+LG
Sbjct: 62 VPLRAVLRKT--RFISGALTGLDTARATATVQPMAG---------PSLELEYDELVLALG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE----------RRN----------F 239
A +L VPG AE F++L +A + D L +LE RR+ +
Sbjct: 111 ATSRLLPVPGLAERGIGFNSLAEAAHLRDHVLRQLEIAAATTDPEVRRSALTFVFVGGGY 170
Query: 240 ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
+E +Q + V+ G P + ++ + + +LG + + E +
Sbjct: 171 TGVEAVAELQDMAVDVL---EGYPEVDRSEMRWILVEAMDRILGTVSADLAELATTELTA 227
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
+ + I ++++ +L+L K +D ++W G++P E
Sbjct: 228 RGID---IRTGTLLESAENGVLQLSDGTK------LSSDTLVWVAGTRPQTIIGE----- 273
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGW 418
LP++ RG+ D+T+ V G P I++ GD +A+ D G P TAQ A +QA G
Sbjct: 274 -LGLPVDDRGRLVVDDTMRVHGQPNIWSAGDCAAVPDPEKGGTCPPTAQHAVRQAQQLGE 332
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
NL + + PFR+ + GE + LG+N A V G +DG + + R+ Y ++P
Sbjct: 333 NLLLTLRGHAVKPFRYNSRGEFVTLGKNKAV---GEVLGHKVDGTLAWTLRRAYYATQIP 389
Query: 479 TDEHRLKVGVSWL 491
T ++V W+
Sbjct: 390 TWNRTVRVLGDWV 402
>gi|268318203|ref|YP_003291922.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Rhodothermus marinus DSM 4252]
gi|262335737|gb|ACY49534.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Rhodothermus marinus DSM 4252]
Length = 449
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 123/445 (27%), Positives = 195/445 (43%), Gaps = 79/445 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVD 135
+ +PR+ I+G GFGGL A L + P +V+L+D+ F+P+LY++ + ++
Sbjct: 15 QDRPRVVIVGAGFGGLTLARALR-------RDPVEVVLIDRQNYHTFQPLLYQVATAGLE 67
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
EIA A G+ F R +GV+ VLLE G +++D+L
Sbjct: 68 PEEIAH------AVRGI-FQGRRNFRFVMGTVVGVDWDAQA-----VLLEDGDRIDFDYL 115
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDAC----RVDRKLSELERRNFERLEEKGIVQAI 251
VL+ GA + GAAE++F TLEDA + R+ E +R ER+ E G++ +
Sbjct: 116 VLAAGATTNYFGIEGAAEYSFSLKTLEDAIALRSHIIRQFEEADRHP-ERIRE-GLLNIV 173
Query: 252 NVETTICPTGT---------------------PGNRE-----AALKVLSARKVQLVLGYF 285
V PTG P NR AL + A + + Y
Sbjct: 174 VVGG--GPTGIEMAGALVEWFELVFRKDYPHLPMNRARVLLVEALDTVLATYDERLQQYA 231
Query: 286 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 345
R +RR G E + P + P+ ++ ++ V+W G
Sbjct: 232 RRQLRRRG-VELHLGDPVARVTPDAVYLQSGER----------------IPTRTVIWAAG 274
Query: 346 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 405
+ P +RL LP G+ E + L V GHP +F +GD +A RD +GR P
Sbjct: 275 VRAC-----PLADRL-GLPQTRGGRIEVEADLRVPGHPNVFVIGDLAASRDENGRLHPQM 328
Query: 406 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 465
A VA Q A + + + PF +++ G M +GR+ AAV+ G+ L GP+
Sbjct: 329 APVAIQGARHVARQIRRLLQGQETEPFHYRHRGTMATIGRH-AAVA-ELKGGLRLTGPLA 386
Query: 466 HSARKLAYLIRLPTDEHRLKVGVSW 490
A +L++L +RL+V ++W
Sbjct: 387 WFAWLALHLVQLIGFRNRLQVLINW 411
>gi|269928842|ref|YP_003321163.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Sphaerobacter thermophilus DSM 20745]
gi|269788199|gb|ACZ40341.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Sphaerobacter thermophilus DSM 20745]
Length = 451
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 116/437 (26%), Positives = 201/437 (45%), Gaps = 52/437 (11%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+++ PRI ILGGGF G+YTA L+ + + ++ +V++ FVF P++ E++SG ++
Sbjct: 8 ERQAPRIVILGGGFAGVYTAFELQKRLRR--TPAEIAIVNRENFFVFYPLIPEIVSGAIE 65
Query: 136 AWEI-------APRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG 187
I PR + TG+ + RV + HG +
Sbjct: 66 TEHILNPIRLLVPRATLYVGEITGIDLAEQRVDI---------------RHGLYRHRQQP 110
Query: 188 LIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFE------ 240
+ YD LVL+LG P + +VPG E+AF L A + L + LE+ + E
Sbjct: 111 RSLYYDHLVLALGGVPNVGLVPGLGEYAFDVQRLSHAFALRNHLIDILEQGDIETDPVAK 170
Query: 241 -RLEEKGIVQAINVETTICPTGTPGNREAA--LKVLSARKVQLVLGYFVRCIRRVGEFEA 297
RL +V + T +AA + LS ++VL + R + +
Sbjct: 171 ARLLTVVVVGGGANGVEVVAEVTDLLYDAAKHYRHLSTDDFRIVLVHG--GDRLIPDLPE 228
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
++ + + + + + + ++P A++ + + E + V+ +VG P
Sbjct: 229 NLGRFAEQQLRSRGVEVILGRRVASVEPTAVRLDDGTVIETETVVGSVGVMP-------- 280
Query: 357 NNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQA 413
N + DLPL + RG+ DE + V+G ++ALGD++ + D ++G+P P TAQ A ++A
Sbjct: 281 NPLVRDLPLPKDERGRLIVDEYMAVEGQDNVWALGDNARVPDPTTGQPYPQTAQHAIREA 340
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
N+ A + R P ++ LG+M+ LG A V+ + G T G + Y
Sbjct: 341 RVLAHNVAARLRGRSPKPIAYRTLGQMVALGHRSAVVN---LRGWTFSGFPAWWLFRTYY 397
Query: 474 LIRLPTDEHRLKVGVSW 490
L +LP E RL+V + W
Sbjct: 398 LSQLPRWEKRLRVTLDW 414
>gi|108804058|ref|YP_643995.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Rubrobacter xylanophilus DSM 9941]
gi|108765301|gb|ABG04183.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Rubrobacter xylanophilus DSM 9941]
Length = 450
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 113/454 (24%), Positives = 193/454 (42%), Gaps = 94/454 (20%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ I+GGGF G YTA + + +D VL++ + F F P++ E++S +VDA +A
Sbjct: 27 KVLIVGGGFAG-YTAAKTLCELVRDRDDVGVLVLSRENYFTFWPIVPEVVSNDVDAHNVA 85
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L G F + RV+ + P ++ V+ E + YD LV+++G
Sbjct: 86 QPLRRALITAGASFRRARVQRVVPERNV-------------VVAEGDIEFPYDQLVIAVG 132
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
+P +PG E A LEDA ++ R ER EE +++
Sbjct: 133 GQPNFFGIPGVEEHALSMRGLEDA-------EQIRNRVIERFEEVSLIRG---------- 175
Query: 261 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI 320
++ ++ +V+G + + V + + PNI D N +
Sbjct: 176 ----------EIPESKLTFVVIGGGATGVEVASQIHTLVHEHLASDYPNI--DPNRVRIY 223
Query: 321 L---------ELQPAI-KGLESQIFEADL----------------------------VLW 342
L EL PA+ K ++++ + V+W
Sbjct: 224 LVEALPEILPELDPALRKAARNRLYRQRIEVLTNTLAEEVTADCVRLKGGGEISSENVIW 283
Query: 343 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD--SSGR 400
T G++P RL LP + + DE L V+GH I+A+GD +A+ D G+
Sbjct: 284 TAGNRP-----NAVIQRL-GLPYDEKNGIRVDEYLRVEGHRDIWAIGDCAAIPDVRQEGK 337
Query: 401 PLPATAQVAFQQADFAGWNLWAAINDR--PLLPFRFQNLGEMMILGRNDAAVSPSFVEGV 458
+P AQ A Q+ N+ A ++ R L F ++ LG+++ LG +D AV+ V GV
Sbjct: 338 IVPPNAQAAVQEGKTVARNVLAVLDGREDELERFEYKPLGQLVELG-SDFAVNE--VMGV 394
Query: 459 TLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 492
G + +LAYL+RL + + + +V W+
Sbjct: 395 RFSGFLAALFWRLAYLVRLTSPQSKARVAADWIV 428
>gi|221633885|ref|YP_002523111.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Thermomicrobium roseum DSM 5159]
gi|221156852|gb|ACM05979.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Thermomicrobium roseum DSM 5159]
Length = 468
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 114/435 (26%), Positives = 191/435 (43%), Gaps = 58/435 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I GGGF G+ A +L +V LV + FVF P++ E+++G + I
Sbjct: 11 RIVIAGGGFAGVTAAHQLRHAA--RAGHVEVALVSRENAFVFYPLMPEVIAGGLRVETIL 68
Query: 141 PRFADLLAN--------TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
+L + TGV + V + HG + L + Y
Sbjct: 69 TSIRHVLPHARLYVGELTGVHLERQTVTI---------------QHGLYQHHQRPLELPY 113
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGI----V 248
D LVL+LG P +PG ++AF L +A + L +L LE+ I
Sbjct: 114 DHLVLALGGVPATYGIPGLDDYAFDVQRLSNAFALRNHLIDL-------LEQADIEPDPA 166
Query: 249 QAINVETTICPTGTPGNREAALKVLS--------ARKVQLVLGYFVRC---IRRVGEFEA 297
+ + T + G P E A ++ S R +Q V R + F
Sbjct: 167 EQRRLLTVVVIGGGPTGVEVAAEIRSLFTHALPYYRAIQPDTARIVLVEALPRLLTGFPD 226
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI-FEADLVLWTVGSKPLLPHVEPP 356
+V + + + + +++++PA L+ E+ ++ +G +P P
Sbjct: 227 AVAHRAARELRQRGIEVLLGRKVIQVEPAAVVLDDGTRLESRTIVSAIGVEP------NP 280
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADF 415
R LPL+ RG+ DE L V GHP ++A+GD++A+ D ++GRP TAQ A +QA
Sbjct: 281 IVRSFGLPLDQRGRIVVDEYLRVTGHPNVWAIGDNAAVIDPATGRPYAPTAQHAVRQAKL 340
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
NL A++ PL P R++ G M+ LG +DA +++ VTL G + + L+
Sbjct: 341 LARNLVASLRSEPLQPMRYRTRGMMVTLGDHDAI---AWLGRVTLTGFLAWWLWRTYALL 397
Query: 476 RLPTDEHRLKVGVSW 490
++P + R+++ + W
Sbjct: 398 QIPRWDRRIRLAMEW 412
>gi|384564809|ref|ZP_10011913.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
glauca K62]
gi|384520663|gb|EIE97858.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
glauca K62]
Length = 431
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 115/432 (26%), Positives = 193/432 (44%), Gaps = 56/432 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG+ GLYTALRL+ + + +V +V+ V++P+L E+ SG ++
Sbjct: 4 RILIVGGGYVGLYTALRLQRGLRPGEA--EVTVVNPENYMVYRPLLPEVASGTLEPRHAV 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+L +F + L PMA L ++YD LVL++G
Sbjct: 62 VPLRAVLRKA--RFVSGALTGLDTVRATATVRPMAGPE---------LELDYDELVLAVG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE----------RRN----------F 239
A KL VPG AE F++L +A + D L +LE RR+ +
Sbjct: 111 ATSKLLPVPGLAEHGIGFNSLAEAAHLRDHVLRQLEIASATPDPKLRRSALTFVFVGGGY 170
Query: 240 ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
+E +Q + V+ G P + ++ + + +LG + + E +
Sbjct: 171 TGVEAIAELQDMAVDVL---EGYPEIDRSEMRWVLVEAMDRILGTVSADLAELATTELTA 227
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
+ + I ++++ +++L K AD ++W G++P +P
Sbjct: 228 RGID---IRTGTLLESAENRVMQLSDGTK------LPADTLVWVAGTRP-----QPILGE 273
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGW 418
L LP++ RG+ D+T+ V GH I++ GD +A+ D G P TAQ A +QA G
Sbjct: 274 L-GLPVDERGRLVVDDTMRVDGHANIWSAGDCAAVPDPEKGGTCPPTAQHAVRQAQQLGE 332
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
NL + R PFR+ + GE + LG+N A V G +DG + + R+ Y ++P
Sbjct: 333 NLLLTLRGRAGKPFRYNSRGEFVTLGKNKAV---GEVLGHKVDGVLAWTLRRAYYATQIP 389
Query: 479 TDEHRLKVGVSW 490
T ++V W
Sbjct: 390 TWNRTVRVLGDW 401
>gi|347753864|ref|YP_004861428.1| NADH dehydrogenase, FAD-containing subunit [Candidatus
Chloracidobacterium thermophilum B]
gi|347586382|gb|AEP10912.1| NADH dehydrogenase, FAD-containing subunit [Candidatus
Chloracidobacterium thermophilum B]
Length = 413
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 182/419 (43%), Gaps = 56/419 (13%)
Query: 93 YTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGV 152
YTA L +L + +V LV ++ F+F P+LYE+L+ EV W IAP F ++L
Sbjct: 17 YTARALSAL--GVTQTAEVTLVSRTPTFLFLPLLYEILTDEVADWHIAPPFEEVLPRN-- 72
Query: 153 QFFKDRVKLLCPSDHLGVNGP------MACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206
+ +C G P + C G L E D LVL+LG+
Sbjct: 73 ------CRFVCGEVLGGEFQPRRYGVRVRCADGEQTL-------EADTLVLALGSVADDF 119
Query: 207 VVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNR 266
+PG PF +L DA + R L E ++ V V + G G
Sbjct: 120 GLPGVKAHTRPFRSLADAHALKRSL-------VEAVQHAAAVPRETVSLVVIGAGPSGVE 172
Query: 267 EAALKV--LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI-LEL 323
AA+ L + Q L + V + Q S A+ ++A + + ++I L L
Sbjct: 173 LAAVAADRLQSELRQAGLPPTRAHLHLVDRLPEILPQYAS-ALRHLAHRELARRHIKLHL 231
Query: 324 QPAIKGLESQIFE--------ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE 375
+ S E A ++WT GS+P E P R + RG+
Sbjct: 232 GVGVASCSSAGVELEDGTHIAARTIVWTAGSRPAPVLAEFPFVR------DRRGRIPVSR 285
Query: 376 TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQ 435
TL V G P ++ALGD +A + ATAQVA +QA N+ AA L + ++
Sbjct: 286 TLEVPGFPGVYALGDIAASVAAP-----ATAQVAVRQALVVAHNIAAAQQGAALREYHYE 340
Query: 436 NLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKS 494
LGEMM LGR AA + + GV +G G+ R+L YL+ +P H +VG+SWL +S
Sbjct: 341 PLGEMMTLGRGCAAAN---ILGVVFNGVAGYLTRRLVYLLAMPEPWHAARVGLSWLGQS 396
>gi|383828659|ref|ZP_09983748.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
xinjiangensis XJ-54]
gi|383461312|gb|EID53402.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
xinjiangensis XJ-54]
Length = 431
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 191/432 (44%), Gaps = 54/432 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG+ GLYTALRL+ + Q + +V +++ V++P+L E+ SG ++
Sbjct: 4 RILIVGGGYVGLYTALRLQRGLRQGEA--EVTVINPENYMVYRPLLPEVASGTLEPRHAV 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+L +F + L PMA L + YD LVL+LG
Sbjct: 62 VPLRAVLRRA--RFISGALTDLDTDRATATVQPMAG---------PALSLPYDELVLALG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETTICP 259
A KL +PG A+ F++L +A + D L +LE EE ++ +
Sbjct: 111 ATSKLLPIPGLADNGIGFNSLAEAAHLRDHVLRQLEIAAATTDEE---LRRCALTFVFVG 167
Query: 260 TGTPGNREAALKVLSARKVQLVLGY-----------FVRCIRRV-GEFEASVKQPESGAI 307
G G A+ L + ++ GY V + R+ G +A + + + +
Sbjct: 168 GGYTGVE--AIAELQDMAIDVLEGYPEVDRSEMRWILVEAMDRILGTVDADLAELATTEL 225
Query: 308 PNIAAD-------KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRL 360
D ++++ +L L K +D ++W G++P E
Sbjct: 226 TARGIDIRTGTLLESAENRVLRLSDGTK------LSSDTLVWVAGTRPQTIVGE------ 273
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWN 419
LP++ RG+ D+T+ V GH I++ GD +A+ D G P TAQ A +QA G N
Sbjct: 274 LGLPVDERGRLVVDDTMRVNGHANIWSAGDCAAVPDPEKGGTCPPTAQHAVRQAQQLGEN 333
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
L + + + PFR+ + GE + LG+N A V G ++G + + R+ Y ++PT
Sbjct: 334 LLLTLRGQAVKPFRYNSRGEFVTLGKNKAV---GQVLGHKVNGSLAWTLRRAYYATQIPT 390
Query: 480 DEHRLKVGVSWL 491
++V W+
Sbjct: 391 WNRTVRVLGDWV 402
>gi|383452591|ref|YP_005366580.1| NADH dehydrogenase [Corallococcus coralloides DSM 2259]
gi|380735154|gb|AFE11156.1| NADH dehydrogenase [Corallococcus coralloides DSM 2259]
Length = 468
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 119/469 (25%), Positives = 198/469 (42%), Gaps = 91/469 (19%)
Query: 63 SEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122
++++S P +K R+ ILGGGF G+Y AL LE + + D +V LV + F+F
Sbjct: 3 ADNQSKGLCVGAPPPRK-RVLILGGGFAGMYAALHLERQLGKRDDV-EVTLVSRDNFFLF 60
Query: 123 KPMLYELLSGEVDAWEIAPRFADLLAN--------TGVQFFKDRVKLLCPSDHLGVNGPM 174
PML+E+ + +++A I L+ +G+ RV + H G++G
Sbjct: 61 TPMLHEVAASDLNATAIVISLRKLMPRLTFVEGDVSGLDLESKRVTVA----HGGLDG-- 114
Query: 175 ACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDA-----CRVDR 229
H T+ EYD++V+++G+E PG +++ TL DA C VDR
Sbjct: 115 ---HSHTL--------EYDYMVMAMGSETNFFGKPGPRDYSLTMKTLGDAMLLRNCLVDR 163
Query: 230 KLSELERRNFERLEEKGIVQ---------------AINVETTICPTGTPGNREAALKVLS 274
L E + IV AIN P + A ++V+
Sbjct: 164 -LEEADADCITMGTRNAIVTFVVVGGGFAGVEAAGAINDFIHGALPFYPNIQHANVRVML 222
Query: 275 ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIK------ 328
+ VL PE G A + ++ +E++ I
Sbjct: 223 VHGGKEVL-------------------PELGEDLGAYARQKLIEHGVEVRTGIHVKDVTE 263
Query: 329 -GLE---SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHP 383
G+E + V+WT G V PP+ L LP RG+ + + + V G P
Sbjct: 264 AGVELPDGTVVPTKTVVWTAG-------VTPPS-LLCTLPCEMERGRLKVNARMEVPGFP 315
Query: 384 RIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 441
++ALGD +++ D + G+P P TAQ A +Q N+ AA+ +P FR++ LG++
Sbjct: 316 GVWALGDCASVPDVTNGGKPCPPTAQHALRQGVTVAGNVSAALKGQPGKAFRYKMLGQLA 375
Query: 442 ILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
+G+ + G+ G + YL +LP E +++V + W
Sbjct: 376 TIGQRSGVAR---ILGLKFSGTFAWVLWRTVYLFKLPKLETKVRVAMGW 421
>gi|258652064|ref|YP_003201220.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Nakamurella multipartita DSM 44233]
gi|258555289|gb|ACV78231.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Nakamurella multipartita DSM 44233]
Length = 431
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 171/399 (42%), Gaps = 41/399 (10%)
Query: 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR 142
I+GGG G+ A L D V L D+ + F+P+LY++ S ++ A +IA
Sbjct: 5 IIIGGGMAGVACASELA------DHDVDVTLFDRHDYTQFQPLLYQVASSQLPAEDIARP 58
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPM--ACTHGGTVLLESGLIVEYDWLVLSLG 200
+ F R + ++ G++ T G ES + D+LV++ G
Sbjct: 59 LS-------TAFADQRRVVTVTAEVTGIDPATRTVVTKDGENAGESTVDYTADYLVIAAG 111
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ VPGAAE ++P T+EDA R+L + R RL + + V +C
Sbjct: 112 SQANFFGVPGAAEHSYPLYTVEDA----RRLRQHLRDRLRRLSDPATAEPYTV--IVCGG 165
Query: 261 GTPGNREAAL--KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 318
G G A ++ A K Q L + +R V A +K P + A K +K
Sbjct: 166 GPTGVETAGALAELFGALKDQGTL-HAEATVRLVDHGHALLK-PFTDKTHEYARAKLIEK 223
Query: 319 YI-LELQPAIKGLESQI--------FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
+ + A+ +++ D V+W G PP L L G
Sbjct: 224 GVQITFGVAVAAVQADTATLSDGSTVATDTVIWAGGIS------GPPIVSTTGLSLGHGG 277
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
+ + L V G+P +FA+GD + + D SG LP VA Q +AG N+ A P+
Sbjct: 278 RIDVAADLTVPGNPGVFAVGDVANIPDGSGHALPQLGSVAQQSGKWAGKNIVAHRKGAPV 337
Query: 430 LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 468
PF + + G M ++GRN AAVS L+GP+ + A
Sbjct: 338 TPFHYHDKGIMAMIGRN-AAVSEIGKHRHHLEGPMAYVA 375
>gi|87125258|ref|ZP_01081104.1| putative NADH dehydrogenase, transport associated [Synechococcus
sp. RS9917]
gi|86167027|gb|EAQ68288.1| putative NADH dehydrogenase, transport associated [Synechococcus
sp. RS9917]
Length = 379
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 117/421 (27%), Positives = 183/421 (43%), Gaps = 83/421 (19%)
Query: 92 LYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG 151
L TAL L Q +P ++L++ ++RF+F P+LYELLS E+ WE+AP + LL + G
Sbjct: 16 LSTALALS----QHQPRPPIVLIEPNDRFLFLPLLYELLSNELRPWEVAPSYDTLLRSRG 71
Query: 152 VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGA 211
+ + + R + S TV +G + Y LVL+ G+EP +PG
Sbjct: 72 IAWIQSRASRIDTSSR-------------TVQTSNGDCLSYGQLVLASGSEPDDFGIPGV 118
Query: 212 AEFAFPFSTLEDACRVDRKLSELERRNFER--------------------LEEKGIVQAI 251
+ A F TL+D + ++ L R+ L V I
Sbjct: 119 EDHALRFHTLQDVTLLRERIQALNRQQHRNVAIVGAGAAGVELACKLADLLRGSATVHLI 178
Query: 252 NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIA 311
TI P NRE A + L R V+L L VR + +ASV + G++ +
Sbjct: 179 ERGDTILPNAKAFNREQASRALQKRGVELHLRRSVRSV------DASVVHLDQGSLGH-- 230
Query: 312 ADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQA 371
D ++WT G++ LP + P LP +G+
Sbjct: 231 --------------------------DGLIWTAGTRARLPSLTP------SLPCR-QGRL 257
Query: 372 ETDETLCVKGHPRIFALGDSSALR--DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
++ LC P + A+GD + + +++ P TAQ A QQ A + A
Sbjct: 258 LVNDVLCSVACPSLLAIGDVAVRQTVEAAVDTWPHTAQAALQQGQAAARTVMALRAGSEP 317
Query: 430 LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVS 489
+PF+F++LGEM+ LG +A ++ G+TL GP+ R+L YL RLP L+ +
Sbjct: 318 MPFQFRDLGEMLSLGVGEATITGM---GLTLAGPLAFQLRRLIYLARLPDLSLGLRSAGA 374
Query: 490 W 490
W
Sbjct: 375 W 375
>gi|161527520|ref|YP_001581346.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Nitrosopumilus maritimus SCM1]
gi|160338821|gb|ABX11908.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Nitrosopumilus maritimus SCM1]
Length = 451
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 119/451 (26%), Positives = 199/451 (44%), Gaps = 59/451 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ K +I +LGGGF GL +LE +++D + +++LV + +F PML ++ SG ++
Sbjct: 3 RNKKKIVVLGGGFAGLECTRKLEEY-FKNDSEIEIVLVSEDNFLLFTPMLPQVASGMIET 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
I + F++ RVK + P G + G + G+ + YD+LV
Sbjct: 62 RHIVMPIRTITKKA--TFYEGRVKNIDPY------GKIVNLWGSGN--KRGISLHYDFLV 111
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFER--LEEKGIVQAINV 253
++LG+E + + A+ TL DA V +R + LE+ E + + ++ + V
Sbjct: 112 VALGSETNFFGMNDLEKNAYQMKTLNDAVMVRNRMIDMLEQAENETNPILKHSLLTFVVV 171
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR---RVGEFEA--SVKQPESGAIP 308
T G E +L RK Y+ + RV EA ++ S ++
Sbjct: 172 GGGFAGIETAG--EIMDLLLDVRK------YYPNIKKEDIRVVVLEALPNILPGFSESLA 223
Query: 309 NIAADKNSDKYI-LELQPAI---KGLESQIFEADL-----------------VLWTVGSK 347
A +K ++ I ++LQ A+ G E I D+ V+WT G
Sbjct: 224 KFAQEKLTEHGIEIKLQTAVTSFDGDEVMIKRLDVDKDASDDSVISSIQTKTVIWTAG-- 281
Query: 348 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATA 406
V P N L +G+ D+ L V P +FA+GD + D +S RP P TA
Sbjct: 282 -----VTPVNTIKRSLFKTDKGKIIVDKNLEVNDFPGVFAIGDCALFMDPNSQRPFPPTA 336
Query: 407 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 466
Q+A QA A NL A I + F +++ G+M I+G+ SF+ G+ + G
Sbjct: 337 QIAEAQAKIAAKNLHALIRNEEKTEFTYESKGQMAIIGKRTGI--ASFL-GMNIHGIFAW 393
Query: 467 SARKLAYLIRLPTDEHRLKVGVSWLTKSAID 497
+ YL ++PT + R +V + W + D
Sbjct: 394 FLWRNIYLSKIPTWDKRFRVFLDWTADAIFD 424
>gi|145220177|ref|YP_001130886.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chlorobium phaeovibrioides DSM 265]
gi|145206341|gb|ABP37384.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chlorobium phaeovibrioides DSM 265]
Length = 438
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 102/422 (24%), Positives = 187/422 (44%), Gaps = 38/422 (9%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K R+ I+GGGF GL A L + +DD ++L+D+ +F+P+LY++ +D +
Sbjct: 11 KKRVVIVGGGFTGLRAARILGN---RDDL--DIVLIDRRNYHLFQPLLYQVAMSALDEGD 65
Query: 139 IAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++LAN + +K V+ + TV + G V YD+L+L
Sbjct: 66 IAAPLRNMLANYNNITVYKGIVERVNAESK-------------TVTTDFGE-VAYDYLIL 111
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL---SELERRNFERLEEKGIVQAINV- 253
+ G G ++A T+ A + R++ E R + +E K ++ + V
Sbjct: 112 ACGVRHHYFGNNGWEQYAPGLKTISQAKEIRRRVLEAYEAAERTNDPVERKKLLTFVIVG 171
Query: 254 --ETTICPTGTPG--NREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIP 308
T + G+ G +R K+ +L + V R+ G F+ ++ + ++
Sbjct: 172 GGPTGVELAGSIGEMSRYTLSKLYRQIDPKLTRIFIVEAAPRILGTFDRNLASKATRSLE 231
Query: 309 NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 368
+ ++ + ++ + ++ EA VLW G + + PN+ + R
Sbjct: 232 QLGVQIWTNSMVSDVDENGVQIGNERIEAATVLWAAG----VTAIAIPNDMGAETDRIGR 287
Query: 369 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
E D L + GHP IF GD + L + +G+PLP A VA Q+ F G + + +
Sbjct: 288 FVVEGD--LSIPGHPEIFVGGDQACLLNEAGKPLPGMAPVAIQEGHFIGKTILRDLKGKE 345
Query: 429 LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGV 488
PF++ + G+M +G+N A V + + DG L ++ L + +HR+ V +
Sbjct: 346 RKPFKYTDKGQMATIGKNRAIVE---IGNIQFDGAPAWFTWLLVHIYYLTSFKHRVFVLM 402
Query: 489 SW 490
W
Sbjct: 403 QW 404
>gi|194335855|ref|YP_002017649.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pelodictyon phaeoclathratiforme BU-1]
gi|194308332|gb|ACF43032.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Pelodictyon phaeoclathratiforme BU-1]
Length = 434
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 104/428 (24%), Positives = 173/428 (40%), Gaps = 49/428 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K R+ I+GGGF GL TA V + + ++ L+D+ +F+P+LY++ + +
Sbjct: 2 KKRVVIIGGGFAGLNTAR-----VLGNKEDIEITLIDRKNYHLFQPLLYQVAMAALGEGD 56
Query: 139 IAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++LAN V FK V +H+ + T + YD+LVL
Sbjct: 57 IAAPLRNMLANYRNVTVFKGIV------EHIDMENKTVVTDFHNI--------PYDYLVL 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK-GIVQAINVETT 256
+ G + EFA TL A + R++ E +ER E V+ + T
Sbjct: 103 ACGVQHHYFGHNEWEEFAPGLKTLAQAKEIRRRVME----AYERAERTTDFVERKKLLTF 158
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCI--------------RRVGEFEASVKQP 302
+ G P E A + + L F R I R +G F +
Sbjct: 159 VIVGGGPTGVELAGSI--GEMSRYTLSKFYRNIDPKLTRIFIVEAAPRILGSFSPDLASK 216
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ ++ + ++ + E+ + ++ EA VLW G + +
Sbjct: 217 ATRSLEKLGVQVWTNSMVSEVDADGVQIGNERIEAATVLWAAGVTAI-----EIGKTMEG 271
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
+ + G+ E L + GHP IF GD + +G PLP A VA QQ G N+
Sbjct: 272 VETDRIGRIVVSEDLSIPGHPEIFVGGDLAHFVSENGNPLPGLAPVALQQGRAIGKNILL 331
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 482
+ + FR+++ G+M +G+N A V G+ DG L ++ L + H
Sbjct: 332 DLKTKARKVFRYRDKGQMATIGKNKAIVEFG---GLKFDGIFAWFTWLLVHIYFLTSFRH 388
Query: 483 RLKVGVSW 490
R+ V + W
Sbjct: 389 RVFVLLQW 396
>gi|269839149|ref|YP_003323841.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermobaculum terrenum ATCC BAA-798]
gi|269790879|gb|ACZ43019.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Thermobaculum terrenum ATCC BAA-798]
Length = 428
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 114/434 (26%), Positives = 189/434 (43%), Gaps = 51/434 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+P++ +LGGGF G+ A L + + ++ LV+++ VF P+L E+ GE+D
Sbjct: 5 EPQVVVLGGGFAGMSAAHELA----RQLPRARITLVNRTNFAVFTPLLTEVAVGEIDLRH 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
A L + V F + V+ + PSD + V + + G L E L + YD LV++
Sbjct: 61 AAVNLRSL--SRRVSFQQGEVEDVSPSDRV-VRVRVGSSDAG--LPEKQLELPYDHLVVA 115
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNF--ERLEEKGIVQAINVET 255
LG+ V A + +F TLEDA + + L E N + E + ++ + V
Sbjct: 116 LGSVTNFHHVASAEQHSFGMKTLEDAANLYNHILGAFELANALSDDGEHQRLLTFVTVGG 175
Query: 256 TICPTGTPGNREAALKVLSAR-------KVQLVLGYF-VRCIRRVGEFEASVKQPE---S 304
+ T A ++ L R V++VL + R + +GE A+ E S
Sbjct: 176 GLSGVETTAAVNAFVRRLVLRYPNLHPADVRVVLVHHGSRLLEELGERLAAYTHQELERS 235
Query: 305 GA-------IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
G + +A D + +KG + V+WT G P P
Sbjct: 236 GVEVLLRTELSEVAGDHVT----------LKG--GRQIRTKTVVWTAGVAP-----NPIV 278
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
+R+ + P A G + D L V GHP ++A+GD + + G TAQ A ++
Sbjct: 279 DRI-EAPKGAHGGLKVDPYLSVPGHPGLWAVGDCAEVPRVGGGSYAPTAQNATREGRTVA 337
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
N+ R PFR+ +GE+ ++GR A ++G+ L G + YL ++
Sbjct: 338 ANIALVSQGRAPRPFRYSPIGELALVGRRSAIAD---LKGIKLSGLPAWLLWRGVYLAKI 394
Query: 478 PTDEHRLKVGVSWL 491
P+ RL+V WL
Sbjct: 395 PSGSQRLRVAADWL 408
>gi|374578529|ref|ZP_09651625.1| NADH dehydrogenase, FAD-containing subunit [Bradyrhizobium sp.
WSM471]
gi|374426850|gb|EHR06383.1| NADH dehydrogenase, FAD-containing subunit [Bradyrhizobium sp.
WSM471]
Length = 420
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 172/431 (39%), Gaps = 40/431 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL T RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 7 RVVIVGAGFGGLETTYRLAG------SPVEITLIDRRNHHLFQPLLYQVATASLATSEIA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L+ + +D L GV+ C VL++ G V YD LVL+ G
Sbjct: 61 WPVRHLMRDR-----RDVTTLFATVS--GVDADRRC-----VLIDDGSEVPYDTLVLATG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTICP 259
A +FA TLEDA + R L E E K + V P
Sbjct: 109 ARHAYFGHDEWEQFAPGLKTLEDATTLRRHILVAFEHAERETDPAKRAARLTFVIVGAGP 168
Query: 260 TGTP----------GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN 309
TG A + + K ++VL R + F + ++
Sbjct: 169 TGVELAGTIAEMAHHTLPADFRNIDTNKARVVL--IEAGPRVLAGFPDDLSAYAQASLEK 226
Query: 310 IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
I + + + E+ ++ EA +W G + P P + G
Sbjct: 227 IGVEVVLGQAVTEINREGVVFGGKLLEAKTRIWAAGVRA------SPAAEWLGAPADRAG 280
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
+ + + L + GHP IFA+GD+ + G+P+P A A QQ + + A + P
Sbjct: 281 RVQVENDLTIPGHPEIFAIGDTVLINAWDGKPVPGIAPAAKQQGRYVAETIKARLRKEPT 340
Query: 430 LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVS 489
PFR+++ G + +G+ A + ++ L G I +A++ L HRL V +S
Sbjct: 341 GPFRYKHSGSLAQIGKRLAVIDFGRIK---LRGTIAWWIWGIAHIYFLIGLRHRLSVALS 397
Query: 490 WLTKSAIDSVA 500
WL A D A
Sbjct: 398 WLWIYARDQRA 408
>gi|410697032|gb|AFV76100.1| NADH dehydrogenase, FAD-containing subunit [Thermus oshimai JL-2]
Length = 402
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 151/351 (43%), Gaps = 56/351 (15%)
Query: 112 LLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN 171
LLVD +F+P+LY++ +G ++A IA LL +F RV+ GV+
Sbjct: 30 LLVDARNHHLFQPLLYQVATGYLEAPAIAHPLRPLLGRG--RFLLARVE--------GVD 79
Query: 172 GPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL 231
G +LLE G + Y L+L+ G+ P VPG AF LEDA R+ ++L
Sbjct: 80 -----LKGRRLLLEGGEALPYTHLILATGSRPHDLGVPGVGRHAFFLKGLEDAQRIRQRL 134
Query: 232 SELERRNFERLEEKGIVQAINVETTICPTGTPGNREAA------LKVLSARKVQLVLGYF 285
L +G + + G P E A L+ R V G
Sbjct: 135 L---------LALEGAARGERPLRLLVVGGGPTGVELAGALAEFLRYALRRDFPEVGGAE 185
Query: 286 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE--------SQIFEA 337
V + GE +P A A + + +L Q + G+E A
Sbjct: 186 VLLLE-AGERLLPSFRPALSAYAKRALEGMGVRVVLGAQ--VVGVEEGGARLREGAFLPA 242
Query: 338 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 397
DLVLW VG + N L LP + RG+ TD L + GHP ++A+GD + L
Sbjct: 243 DLVLWAVGVR---------GNPLPGLPTDPRGRVPTDPFLRLPGHPEVYAVGDVNGLG-- 291
Query: 398 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
LP A VA QQ A NL A+ + +PFR+++ G++ ++GRN A
Sbjct: 292 ----LPGLAPVALQQGRLAAENLLRALRGQEPIPFRYRDRGQLAVIGRNKA 338
>gi|333984106|ref|YP_004513316.1| NADH dehydrogenase (ubiquinone) [Methylomonas methanica MC09]
gi|333808147|gb|AEG00817.1| NADH dehydrogenase (ubiquinone) [Methylomonas methanica MC09]
Length = 428
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 183/434 (42%), Gaps = 61/434 (14%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+G GFGGL TA L ++ +V ++D++ +F+P+LY++ + E+ A EI
Sbjct: 9 PHVVIIGAGFGGLATAQVLS------NQAIRVTVIDKANHHLFQPLLYQVATAELTASEI 62
Query: 140 APRFADLLANTG-VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
A + N V+ + VK G++ TV ESG+ ++YD+LVL+
Sbjct: 63 AVPIRHVFKNAANVEVILETVK--------GIDAERQ-----TVATESGMTIQYDFLVLA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLE-EKGIVQAINVETTI 257
GA P G FA +++DA R+ L FER E E + + T +
Sbjct: 110 TGARPSYFNHDGWENFAPGLKSIDDAHRI----KNLILLAFERAEIETDPQRRRALLTFV 165
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAA---DK 314
G P E A V + LV + R + + + ++G PNI +K
Sbjct: 166 IVGGGPTGVELAGAVAEISRKALVHEF-----RHIAPESSRIILVDAG--PNILKGFDEK 218
Query: 315 NSDKYILELQ----------------PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
S + + +L+ P L+ V+W G P
Sbjct: 219 LSKRALKDLKSLGVEVMNGIRVKSIGPDSVDLDGNQISTTSVIWAAGV------TASPAA 272
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQADFAG 417
+ + + D + V+G +I+A+GD+S + S PLP A VA QQ F G
Sbjct: 273 EWLGIQADHSQRIPVDANMAVRGFEQIYAIGDTSNYVPAGSDTPLPGVAAVAKQQGKFLG 332
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
+ A ++ +PL F++++ G M +GRN A V + G L G + ++ L
Sbjct: 333 RYILALVSGKPLPTFKYRDFGSMATIGRNKAVVR---LLGWRLTGAFAWLLWGVVHIYFL 389
Query: 478 PTDEHRLKVGVSWL 491
R +V +W
Sbjct: 390 IGFPRRFRVAFNWF 403
>gi|229916500|ref|YP_002885146.1| NADH dehydrogenase (ubiquinone) [Exiguobacterium sp. AT1b]
gi|229467929|gb|ACQ69701.1| NADH dehydrogenase (ubiquinone) [Exiguobacterium sp. AT1b]
Length = 403
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 168/398 (42%), Gaps = 64/398 (16%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K+P I ILG GFGGL TA+ L+ + D + L+++ + L+E +G ++
Sbjct: 2 KRPNIVILGAGFGGLITAVNLQKTLAAGD--ANITLINKHDYHYQTTWLHEPAAGTMNPD 59
Query: 138 EIAPRFADLLANTGVQFFK---DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ D++ + V+ K DRV T V LE G +VEYD+
Sbjct: 60 QARIYINDIVNPSRVKLVKGIVDRVD----------------TAAKQVTLEDGSVVEYDY 103
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE 254
+V+ LG P+ +PG E A S+L RK+ E +F + + G + N
Sbjct: 104 VVIGLGGVPETFGIPGLKEHAMTISSLNSV----RKIKEHIEYSFAQYKTNG--SSDNSF 157
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVK-----QPESGAIP 308
TI G L + R +L Y V R R+ EA+ PE
Sbjct: 158 VTIVVGGAGFTGIEFLGEIVNRIPELCKQYDVPREAVRIVNIEAAPTVLPGFDPELTTYA 217
Query: 309 NIAADKNSDKYILELQPAIKGLE-------------SQIFEADLVLWT--VGSKPLLPH- 352
++N + ++L IKG+E ++ A+ ++WT V P++
Sbjct: 218 QKWLERNGVE--MKLGNGIKGVEPGVVTFGPLQGDTTETIRANTIIWTGGVSGSPIIEKS 275
Query: 353 -VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAF 410
E NR+ E D GH +F +GD SA+ D +S RP P TAQ+A
Sbjct: 276 GFEAVRNRV---------MVEADNR--APGHDNVFIIGDCSAVMDPASNRPYPPTAQIAT 324
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
QQA N+ A IN + F +++ G + LG ND
Sbjct: 325 QQAHNVAKNIAALINGKSTSKFTYESKGTVASLGHNDG 362
>gi|300866304|ref|ZP_07111009.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
[Oscillatoria sp. PCC 6506]
gi|300335701|emb|CBN56169.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
[Oscillatoria sp. PCC 6506]
Length = 491
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 17/157 (10%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+GGGF GL+TAL L + ++L+D SERF FKP+LYE SGE+DA ++
Sbjct: 13 QTVIVGGGFTGLFTALHL----AHEHYPRSIILIDSSERFCFKPLLYEYFSGEMDANQVV 68
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PRF +LL ++G+ F +D V+ + V L SG Y LVL+LG
Sbjct: 69 PRFEELLKDSGIIFVQDTVQSIDLEQR-------------EVKLTSGTNYNYSNLVLALG 115
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR 237
+ V GA E+AF F T E+A +DR L + +R
Sbjct: 116 SVTGYFGVEGAKEYAFDFRTQENAIALDRHLRDCLQR 152
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 400 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 459
+PLP TAQVA+QQ NL A L P + G ++ LG ++A + +
Sbjct: 351 KPLPPTAQVAYQQGATIAHNLKAMALGHELKPAQVNLRGTLLKLGLENSAA--NIYDVFE 408
Query: 460 LDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+ G +GH R+ YL LPT H LKV WL
Sbjct: 409 VKGEVGHLIRQGTYLELLPTPLHNLKVTTDWL 440
>gi|108803940|ref|YP_643877.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Rubrobacter xylanophilus DSM 9941]
gi|108765183|gb|ABG04065.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Rubrobacter xylanophilus DSM 9941]
Length = 430
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 110/437 (25%), Positives = 179/437 (40%), Gaps = 67/437 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ + GGGF G A+ L L D V+++ + F F PML ++S +VDA +A
Sbjct: 21 RVLVAGGGFAGYSAAMELCRLTRGRDDV-GVMVLSRENYFTFWPMLPGVISNDVDARNLA 79
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L G F + +++ + P V+ G+ + YD LVL+LG
Sbjct: 80 QPLRRALIRAGASFRRAQLEGVDPER--------------GVVRADGVEIPYDHLVLALG 125
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEE----KGIVQAINVETT 256
EP +PG E + DA ++ R ER EE +G V +
Sbjct: 126 GEPAYFGIPGVEEHCISLRGIADA-------EKIRNRVIERYEEATLARGEVPDSRLSFV 178
Query: 257 ICPTGTPGNREAA-------------LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPE 303
+ G G A L R+V+L L I + +
Sbjct: 179 VIGGGATGVETVAALHELVHGALAEDYPNLHPRRVRLTLVDRNPEILKELDPALRRVARR 238
Query: 304 SGAIPNI-------AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
NI A + D+ +LE + + ++ V+WT G++
Sbjct: 239 RLERLNIRILNGATAREVLKDRVVLE--------DGREIPSENVIWTAGARA-------- 282
Query: 357 NNRLHDLPL--NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
+ +L +LP + R E D + V+G ++ +GD +A D+ G P+P AQ A Q+
Sbjct: 283 SRKLEELPFPHHDRRGLEVDAGMRVRGFANVWGVGDCAANVDAEGNPVPPNAQAAVQEGR 342
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
N+ AAI+ PFR++ LG+++ LG A + V GV G + +L YL
Sbjct: 343 AVARNVLAAIDGGRPEPFRYRPLGQLVELGSRFAV---NEVLGVRFSGLLASLFWRLTYL 399
Query: 475 IRLPTDEHRLKVGVSWL 491
+L + ++R +V WL
Sbjct: 400 YKLESPQNRARVAADWL 416
>gi|338732570|ref|YP_004671043.1| cyclic nucleotide-binding domain-containing protein [Simkania
negevensis Z]
gi|336481953|emb|CCB88552.1| cyclic nucleotide-binding domain protein [Simkania negevensis Z]
Length = 533
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 112/434 (25%), Positives = 191/434 (44%), Gaps = 41/434 (9%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K RI ILGGGFGG YTA+ L+ + + D ++ LV++ FVF+PML E++ G + +
Sbjct: 2 KKRIVILGGGFGGAYTAMHLQKFLKKQDD-FEITLVNRENYFVFQPMLAEVVGGSLGLLD 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMA--CTHGGTVLLESGLIVEYDWLV 196
LL T + V+ + D G +A TH + V YD LV
Sbjct: 61 TINPLRKLLPKTTLY-----VREIEAIDIEGKKIFLAPKFTH-------KSVEVPYDHLV 108
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERRNFERLEEKGIV 248
++LG + G E A PF L D+ + ++ SE + +L +
Sbjct: 109 IALGNVTDFKGMSGLHEHALPFKNLADSITIRNQVIDVIEAASSEKDPHLRRQLLTFVVG 168
Query: 249 QAINVETTICPTGTPGNREAA--LKVLSARKVQLVLGYFV-RCIRRVGEFEASVKQPESG 305
T + R+ A K + ++++VL + R + R E S+ +
Sbjct: 169 GGGFSGTEVVAEVNDFARKLAKQYKTIDCNEIKVVLAHSKDRLMER--ELSPSLGEYAGK 226
Query: 306 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV-EPPNNRLHDLP 364
+ D + +++ P L+S + SK ++ V PN + L
Sbjct: 227 LLKRRGVDIRFNVHLIAATPEEAVLDSG--------ERIASKTIISTVPSSPNPLIEGLA 278
Query: 365 L-NARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNLWA 422
L +G+ D + +G ++ALGD +A+ + +G P TAQ A +QA N+ A
Sbjct: 279 LKTVKGKITVDANMLAEGRNDVWALGDCAAIPNLEAGGICPPTAQFAIRQAKVLAHNIVA 338
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 482
+I ++ FRF+ LG M LG + +AV+ F + G +L Y ++LP +
Sbjct: 339 SIRNKQKKEFRFKALGMMGALGHH-SAVAELFGK-FKFSGICAWFLWRLIYWMKLPGVDR 396
Query: 483 RLKVGVSWLTKSAI 496
++KV +SW+ + +
Sbjct: 397 KVKVALSWILDTMV 410
>gi|320162268|ref|YP_004175493.1| putative oxidoreductase [Anaerolinea thermophila UNI-1]
gi|319996122|dbj|BAJ64893.1| putative oxidoreductase [Anaerolinea thermophila UNI-1]
Length = 427
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 165/400 (41%), Gaps = 77/400 (19%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+G GFGGL A R L QV L+D+ +F+P+LY++ + V A EI
Sbjct: 7 PHVVIVGAGFGGLRAARRFSRL------PVQVTLIDRQNYHLFQPLLYQVATAGVSAGEI 60
Query: 140 A-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
A P A L +F LL L ++ T G V YD L+L+
Sbjct: 61 AYPVRAVLRRQRNARF------LLAEVTDLDLSNRRLLTTAGE--------VRYDVLILA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
+G + A A TL+DA R+ + L FE + V+ T
Sbjct: 107 MGGQTNFFGNATLARHALTLKTLQDAERIRDHVLRL----FEHASRESNVEKRRAMLTFA 162
Query: 259 PT-GTPGNREAALKVLSARKVQLVLGYFVR-------CIRRVGEFEA----------SVK 300
G P E A LS +L+ G R I RV EA +++
Sbjct: 163 VAGGGPSGVEMA-GALS----ELIHGVLKRDFPGFDLSIARVILLEAADRLLPAMPPALQ 217
Query: 301 QPESGAIPNIAAD-------KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL---- 349
Q A+ + ++ D ++ L+ + + + ++W G +
Sbjct: 218 QATLQALHAKGVEVWLNAPVESYDGTLIRLK------DGRQIPSRTLIWVTGIRAAGLAE 271
Query: 350 -LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 408
+P N R+ P TL V G+P +F +GD++ L D G PLP A V
Sbjct: 272 RIPAPRASNGRIRVQP-----------TLQVPGYPEVFVIGDAAYLEDEHGNPLPMVAPV 320
Query: 409 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
A QQAD+A N+ + +PLLPFR+++ G M +GRN A
Sbjct: 321 ALQQADWAVANVQCLLEGKPLLPFRYRDPGMMATIGRNQA 360
>gi|386399050|ref|ZP_10083828.1| NADH dehydrogenase, FAD-containing subunit [Bradyrhizobium sp.
WSM1253]
gi|385739676|gb|EIG59872.1| NADH dehydrogenase, FAD-containing subunit [Bradyrhizobium sp.
WSM1253]
Length = 420
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 171/431 (39%), Gaps = 40/431 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL T RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 7 RVVIVGAGFGGLETTYRLAG------SPVEITLIDRRNHHLFQPLLYQVATASLATSEIA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L+ + +D L GV+ C VL++ G V YD LVL+ G
Sbjct: 61 WPVRHLMRDR-----RDVTTLFAAVS--GVDADRRC-----VLIDDGSEVPYDTLVLATG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTICP 259
A +FA TLEDA + R L ER E K + V P
Sbjct: 109 ARHAYFGHDEWEQFAPGLKTLEDATTLRRHILVAFERAERETDPAKRAARLTFVIVGAGP 168
Query: 260 TGTP----------GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN 309
TG A + + K ++VL R + F + ++
Sbjct: 169 TGVELAGTIAEMAHHTLPADFRNIDTNKARVVL--IEAGPRVLAGFPDDLSAYAQASLEK 226
Query: 310 IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
I + + + E+ + +A +W G + P P + G
Sbjct: 227 IGVEVVLGQAVTEIDRDGVVFGGERLDAKTKIWAAGVRA------SPAAEWLGAPADRAG 280
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
+ + + L + GHP IFA+GD+ + G+P+P A A QQ + A + P
Sbjct: 281 RVQVEADLTIPGHPEIFAIGDTVLINAWDGKPVPGIAPAAKQQGRHVAETIKARLRQEPT 340
Query: 430 LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVS 489
PFR+++ G + +G+ A + ++ L G I +A++ L HRL V +S
Sbjct: 341 GPFRYKHSGSLAQIGKRLAVIDFGRIK---LRGTIAWWIWGIAHIYFLIGLRHRLSVALS 397
Query: 490 WLTKSAIDSVA 500
WL A D A
Sbjct: 398 WLWIYARDQRA 408
>gi|375093904|ref|ZP_09740169.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
marina XMU15]
gi|374654637|gb|EHR49470.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
marina XMU15]
Length = 435
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 115/430 (26%), Positives = 187/430 (43%), Gaps = 50/430 (11%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I GGG+ GLYTALRL+ + +V +V+ V++P+L E+ SG ++
Sbjct: 4 RILIAGGGYVGLYTALRLQRR--LRRGEAEVTVVNPENYMVYRPLLPEVASGTLE----- 56
Query: 141 PRFADLLANT---GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
PR A + G +F R+ + + P A L ++YD LV+
Sbjct: 57 PRHAVVPLRAVLRGSRFIAGRLTGIDAERKVASVAPTAGPW---------LDLDYDELVI 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
LGA KL VPG AE F++L +A L + R E + T
Sbjct: 108 GLGATSKLVPVPGLAEAGIGFNSLAEAA----HLRDHVLRQLEIASATTDTELRKRALTF 163
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGY-----------FVRCIRRVGEFEASVKQPESGA 306
G A+ L + ++ GY V + R+ ++ A
Sbjct: 164 VFVGGGYTGVEAIAELQDMAIDVLEGYPELDASEMRWVLVEAMDRI--LTTVSRELADRA 221
Query: 307 IPNIAADKNSDKYILELQPAIKG----LESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + + +L+ +G + F +D ++W G++P E
Sbjct: 222 MTELTGRGIDIRLGTQLESVEEGELRLSDGSKFFSDTLVWVAGTRPQSIVGE------LG 275
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNLW 421
LP++ RG+ D+ + V+GHP I+A GD +A+ D +G P TAQ A +QA+ G NL
Sbjct: 276 LPVDGRGRLVVDQAMRVEGHPGIWAAGDCAAVPDREAGGVSPPTAQHAVRQAEQLGDNLV 335
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
A + PF++++ GE + LG+N AV +F G DG + + R+ Y ++PT
Sbjct: 336 ATMRGEWPRPFKYRSRGEFVTLGKNK-AVGEAF--GREFDGALAWTLRRAYYATQIPTWN 392
Query: 482 HRLKVGVSWL 491
++V WL
Sbjct: 393 RTIRVLGDWL 402
>gi|251798801|ref|YP_003013532.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus sp. JDR-2]
gi|247546427|gb|ACT03446.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Paenibacillus sp. JDR-2]
Length = 397
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 101/412 (24%), Positives = 166/412 (40%), Gaps = 104/412 (25%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ TALRL+ + ++ V LV++ + L+ +G +
Sbjct: 5 PKIVILGAGYGGVLTALRLQKELNYNEA--DVTLVNKHDYHYITTHLHMPAAGTDNPENA 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L+ + F K V + P D V+LE G + YD+LV+ L
Sbjct: 63 RVSISKLIDEFKIDFVKSTVVQIRPQDK-------------KVILEDGTL-SYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-------------------- 239
G EP+ +PG E+A ++ ++ R+ R+ E + F
Sbjct: 109 GGEPETFGIPGLGEYAMNIRSI-NSVRLIREHIEYQFARFKREPHRTDYLTFIVGGAGFT 167
Query: 240 ---------ERLEE--------KGIVQAINVETTICPTGTPGNR----EAALKVLSARKV 278
+R+ E +V+ N+E PT PG E A+ VL+ + V
Sbjct: 168 GIEFIGELSDRIPELCKQFDVDPALVKIYNIEA--APTALPGFDPELVEYAMDVLTKKGV 225
Query: 279 QLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 337
+G ++ C P+ + E + ++
Sbjct: 226 TFRIGTAIKEC------------TPDGVVVG----------------------EGEEIKS 251
Query: 338 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD 396
V+WT G + N + D RG+ + D+ L GH I+ +GD+S + +
Sbjct: 252 QTVIWTGGIRG--------NRLIEDAGFETMRGRVKVDDNLRAPGHENIYIVGDNSLMFN 303
Query: 397 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
GRP P TAQ+A QQ NL A+I ++PL F F N G + LG+ +A
Sbjct: 304 PEGRPYPPTAQIAMQQGVVCAHNLIASIRNQPLKAFVFSNKGTVASLGKGEA 355
>gi|452751029|ref|ZP_21950775.1| NADH dehydrogenase [alpha proteobacterium JLT2015]
gi|451961179|gb|EMD83589.1| NADH dehydrogenase [alpha proteobacterium JLT2015]
Length = 434
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 179/429 (41%), Gaps = 51/429 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI I+G GFGG+ A L + +V LVD++ +F+P+LY++ + + +
Sbjct: 5 RPRIVIVGSGFGGMAAARALRRV------SAKVTLVDRTNHHLFQPLLYQVATAALSPAD 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA AN + +++L V G T VLL G + YD+LVL+
Sbjct: 59 IAT------ANRVLLRGSSNMRVLMAE----VTGIDTATR--AVLLRDGRRLPYDYLVLA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGI-VQAINVETTI 257
GA E A +LEDA + +L + FER E+ + + T
Sbjct: 107 TGAAYSFFGHDEWREHAMVLKSLEDALAIRARLLD----AFERAEQSSDPAETRRLLTFA 162
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCI--------------RRVGEFEASVKQPE 303
G P E A + + L + CI R + F+ ++
Sbjct: 163 IVGGGPTGVELAGTIAELARTTLARDF--TCIDPQGTRVVLCEAGERLLSAFDPALSAYA 220
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRL-HD 362
+ A+ ++ + + + + L + +A VLW G++ P L +
Sbjct: 221 ADALASLGVEVRTGTAVEAIDSTGLMLGEERIDAGAVLWCAGTE-----ARPAARWLGAE 275
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
N Q ETD V GHP IFA+GD ++ GRPLP A VA QQ G L A
Sbjct: 276 AARNGAVQVETD--CSVPGHPEIFAIGDVASFDGGEGRPLPGLAPVAKQQGAHVGRLLAA 333
Query: 423 AINDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
+ R FR+++ G M ++GR A + G+ L G + A L +L+ L
Sbjct: 334 RVAGRSEPGAFRYRDHGTMAVIGRARAVAR---LGGMQLKGFVAWLAWSLVHLLLLVDFR 390
Query: 482 HRLKVGVSW 490
RL V V+W
Sbjct: 391 SRLLVYVNW 399
>gi|456392310|gb|EMF57653.1| hypothetical protein SBD_0325 [Streptomyces bottropensis ATCC
25435]
Length = 408
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 164/390 (42%), Gaps = 51/390 (13%)
Query: 66 ESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125
E+ ++ + K I +LG G+ G+++A+RL + K + LV+ S RFV +
Sbjct: 7 EAGARPWETEMSKGHHIVVLGAGYTGMFSAIRLARRTRRAGVK--ITLVNPSSRFVERLR 64
Query: 126 LYELLSGEVDAWEIAP-RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLL 184
++++ +G+ E+A R DLLA TGV F + V + P + L
Sbjct: 65 MHQIAAGQ----ELAEHRIPDLLAGTGVSFVQGTVTAIAPEAR-------------RITL 107
Query: 185 ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEE 244
+ + YD LV +LG+ VPG AF + E A R +L+E
Sbjct: 108 DGAETLGYDTLVYALGSSTDTGTVPGVDTHAFTLNNPEIAGRFAARLTE----------- 156
Query: 245 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI---RRVGEFEASVKQ 301
V A T+C G G EAA ++ + G V I G A +
Sbjct: 157 ---VAASAGTVTVCGGGLTGI-EAATEIAESHP-----GLHVTLISLDEPGGMMGAKARA 207
Query: 302 PESGAIPNIAADKNSDKYILELQPAIKGL-ESQIFEADLVLWTVGSKPLLPHVEPPNNRL 360
A+ + + + ++ P GL + ++ +D LWT G K +P +
Sbjct: 208 YLYSALDRLGVTLETGARVTKVLPDAVGLDDGRLVRSDACLWTTGVK--VPALAADAG-- 263
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 420
+ + RG D TL HP I A+GD++A+R + G+ L T Q A + +
Sbjct: 264 --IATDDRGLVLVDATLRSVSHPEIHAIGDAAAVRLAWGQ-LHGTCQSGLPTAQYTADTI 320
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
+ R + PFRF + + LGR DA +
Sbjct: 321 ARLVRGRAVKPFRFGYFHQPVSLGRRDAVI 350
>gi|253575330|ref|ZP_04852668.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Paenibacillus sp. oral taxon 786 str. D14]
gi|251845327|gb|EES73337.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Paenibacillus sp. oral taxon 786 str. D14]
Length = 397
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 105/412 (25%), Positives = 164/412 (39%), Gaps = 98/412 (23%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ TA RL+ + ++ V LV++ + F L+ +G
Sbjct: 5 PKIVILGAGYGGILTAQRLQKELNYNE--ADVTLVNRHDYHYFTTHLHMPAAGTDSIEHT 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L+ + K V+ + +D V+L+ G + YD+LV++L
Sbjct: 63 RVAISKLIDEFKIDLVKSNVQEIRLADK-------------KVVLQDGTL-SYDYLVIAL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLE------------------DACRVDRK----------- 230
G EP+ +PG E+A ++ D R DR
Sbjct: 109 GGEPESFGIPGLTEYAMTIRSINSVRLIRQHIEYQFALYKMDESRTDRLNFVVGGAGFSG 168
Query: 231 ---LSELERRNFERLEEKGI----VQAINVET--TICPTGTPGNREAALKVLSARKVQLV 281
++EL R + +E + V NVE T+ P P E A+ VL + VQ
Sbjct: 169 IEFVAELADRIPQLCKEYDVDPNFVNVYNVEAAPTVLPGFDPELVEYAMDVLKKKGVQFK 228
Query: 282 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 341
+G ++ + D IL IK + V+
Sbjct: 229 IGVAIK-------------------------ECTPDGVILATGEEIK--------SQTVI 255
Query: 342 WTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 399
WT G + NRL + ARG+ + D+ L GH +F +GD+S + + G
Sbjct: 256 WTGGIR---------GNRLIEAAGFETARGRVKVDDYLRAPGHDNVFIIGDNSLMFNPEG 306
Query: 400 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
RP P TAQ+A QQ N+ AAI + L F F N G + LG+ +A S
Sbjct: 307 RPYPPTAQIAMQQGVTCAQNVVAAIRGKELKKFVFSNKGTVASLGKGEAIAS 358
>gi|229551508|ref|ZP_04440233.1| NADH dehydrogenase [Lactobacillus rhamnosus LMS2-1]
gi|385836456|ref|YP_005874231.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Lactobacillus rhamnosus ATCC 8530]
gi|229315132|gb|EEN81105.1| NADH dehydrogenase [Lactobacillus rhamnosus LMS2-1]
gi|355395948|gb|AER65378.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Lactobacillus rhamnosus ATCC 8530]
Length = 395
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 164/376 (43%), Gaps = 37/376 (9%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ G+ L L K + +VDQ+ + L+E+ +G V A +I
Sbjct: 4 VVILGAGYAGIRAVKTLSKLA---PKGTTLTVVDQNANHEERTQLHEVAAGTVPATKITF 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L VQF + +V + S L V+LE+ + YD+L+++LG
Sbjct: 61 NIQQVLPKD-VQFIQSKVSKVDVSSKL-------------VILENHAPLRYDYLIIALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
+ +PGAAE A P + A + + + EL N+++ ++ + I
Sbjct: 107 RSEDFGLPGAAENALPLDNVTSAETIAKTI-ELRVANYKQSQDPKDLTVIVAGAGFTGVE 165
Query: 262 TPGNREAALKVLSARK----VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 317
G +L L+ + V+++ R + F+ + + + +
Sbjct: 166 LLGELTHSLPALAKKYDTPPVKII--SMEMATRILPMFDEKLANYAMDYLKSHGVTMMTG 223
Query: 318 KYILELQPAI----KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR-GQAE 372
I +++P G + + E + ++WTVG ++ + D N R +
Sbjct: 224 SKITKIEPNAVVYADGDQEKKVEGNTIIWTVGVSG--------SDVIADSGFNQRRNRVV 275
Query: 373 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPF 432
L + HP +F +GD SA+ +GRP P TAQ++ Q+ D AG N+ AA+N +PL F
Sbjct: 276 VSNHLNLTDHPEVFIIGDVSAVMTDAGRPYPTTAQISSQEGDHAGKNVAAALNGQPLTDF 335
Query: 433 RFQNLGEMMILGRNDA 448
+++ G + LG D
Sbjct: 336 VYKSKGTVASLGSQDG 351
>gi|209523818|ref|ZP_03272371.1| DoxX family protein [Arthrospira maxima CS-328]
gi|209495850|gb|EDZ96152.1| DoxX family protein [Arthrospira maxima CS-328]
Length = 569
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 114/433 (26%), Positives = 198/433 (45%), Gaps = 61/433 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K RI I+G GFGGL TA RL + VLL+D++ F P+LY++ +G +
Sbjct: 4 KSDRIVIVGAGFGGL-TATRLLA-----KAGANVLLIDRNCYHTFIPLLYQVATGLLYPH 57
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I P + V+F + V D + T G + YD LV
Sbjct: 58 QIVYPLQSAFKKYPNVEFIQTNV------DRINYEYQWVDTDHGQI--------RYDILV 103
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
++ G+ P+LD +PGAA+++ +TLEDA V + + RR LE + I +A + T
Sbjct: 104 IATGSRPQLDHIPGAAKYSLTLNTLEDAAVVRHHIVDRIRRAI--LEPEPIDRA-RLLTF 160
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--AIPNIAADK 314
+ G P E A ++ +++ +LG+ RR+ A V SG +PN +
Sbjct: 161 VIVGGGPTGVELAGGLID--QLRALLGW-----RRLFPL-AKVILVHSGDRLLPNFSQGF 212
Query: 315 NS--DKYILELQPAI-----------KGLE---SQIFEADLVLWTVGSKPLLPHVEPPNN 358
++ ++++ +L ++ +G+E + A ++WT G + V+ P +
Sbjct: 213 SAYCERHLRQLGVSVWLNRRVLRVNSQGVELDTGEAIAAPTIIWTAGVQ-----VDHP-S 266
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
+L + A+G+ + L V HP+++A+GD + LR G L A A QQ +
Sbjct: 267 QLDQISTAAKGKIIVEPILRVPDHPKVYAIGDVAFLRPDHG--LSGIAPEAIQQGEAVAT 324
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
N+ + PFR+ + G+ I+ R +S + + G +G + ++ LP
Sbjct: 325 NILHQLRGTSPQPFRYIDKGKAAIISRYAGILS---CDRLNNTGFLGWLTWLVIHMCYLP 381
Query: 479 TDEHRLKVGVSWL 491
+RL VG +W
Sbjct: 382 GWRNRLTVGYNWF 394
>gi|255658997|ref|ZP_05404406.1| NADH dehydrogenase [Mitsuokella multacida DSM 20544]
gi|260848957|gb|EEX68964.1| NADH dehydrogenase [Mitsuokella multacida DSM 20544]
Length = 421
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 114/459 (24%), Positives = 183/459 (39%), Gaps = 104/459 (22%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
++KKPRI I+G GFGG+ +L L +++ VLLVD+ +F+P+LY++ + +
Sbjct: 4 NQKKPRIVIVGAGFGGV----KLAKLFAKEN--VDVLLVDRHNFQLFQPLLYQVSTAVLS 57
Query: 136 AWEIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
EIA P A + V+FF + + GV+ VLL + + YD+
Sbjct: 58 TDEIAYPVRAFFRKSRNVEFFMAKAE--------GVD------QARKVLLTNHGEIAYDY 103
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFER------------ 241
L+L+ GA + ++ TL++A + + L ER N E
Sbjct: 104 LILAAGATTNYFGMQEVEAHSYGMKTLQEALHIRNHVLHMFERANKETDPEVRRRMLTFV 163
Query: 242 --------LEEKGI---------------------VQAINVETTICPTGTPGNREAALKV 272
+EE G V+ I + P P RE A+KV
Sbjct: 164 VVGGGPTGIEESGALTELFGIQQKEFHNLDFSEVSVKLIEATANVLPMVAPNLREHAVKV 223
Query: 273 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 332
L + V ++L V VG +K + IP
Sbjct: 224 LRKKGVDVMLNTQV-----VGYDGNDLKLKDGTTIPT----------------------- 255
Query: 333 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 392
V+W G K + P ++ + + G+ +E L V+G +FA+GD +
Sbjct: 256 -----QTVIWAAGVKAV-PFIKDCGGEV-----DRGGRIIVNEKLQVEGSDCVFAIGDCA 304
Query: 393 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDAAVS 451
+ + RPLP A VA QQA A N+ I + L F +++LG M +GR +A V
Sbjct: 305 HYQHGTERPLPTVAPVAMQQAQTAHDNIMKLIQGQQDLATFHYKDLGAMATIGRGEAVVD 364
Query: 452 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
+ + + G I A +L+RL V + W
Sbjct: 365 KTKINP-QMTGFIAWCAWMFVHLLRLAGAHANFTVAIKW 402
>gi|119356447|ref|YP_911091.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chlorobium phaeobacteroides DSM 266]
gi|119353796|gb|ABL64667.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chlorobium phaeobacteroides DSM 266]
Length = 435
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 103/430 (23%), Positives = 177/430 (41%), Gaps = 54/430 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K R+ I+GGGF GL TA L + + +V L+D+ +F+P+LY++ + +
Sbjct: 2 KQRVVIIGGGFTGLNTAKLL-----GNKQNIEVTLIDRKNYHLFQPLLYQVAMAALGEGD 56
Query: 139 IAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++LAN + FK V+ A T+ + G I YD+LVL
Sbjct: 57 IAAPLRNMLANYDNITVFKGIVE-------------SADIANKTIFTDFGDI-PYDYLVL 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL---SELERRNFERLEEKGIVQAINVE 254
+ G + +FA TL A + R++ E R + +E K ++
Sbjct: 103 ACGVQHHYFGNNQWEKFAPGLKTLAQAKEIRRRVMEAYECAERTKDPVERKKLL------ 156
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI--------------RRVGEFEASVK 300
T + G P E A + + L F R I R +G F +
Sbjct: 157 TFVIVGGGPTGVELAGSI--GEMSRYTLSKFYRNIDPKLTRIFIVEAAPRILGSFSPELT 214
Query: 301 QPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRL 360
+ ++ + + + ++ + ++ EA VLW G + +
Sbjct: 215 SKATRSLEKLGVQVWTSSMVTDVDANGVQIGNERIEAATVLWAAGVTAI------AIGKN 268
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 420
L + G+ +E L + GHP +FA GD + +G+ LP A VA QQ G N+
Sbjct: 269 MGLETDHLGRILVNEDLSIPGHPELFAGGDLAHFELENGKTLPGLAPVALQQGRAIGRNI 328
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 480
+ + PFR+++ G+M +G+N A V + + DG + L ++ L +
Sbjct: 329 LLDLKKKARKPFRYRDKGQMATIGKNKAIVE---IGSLKFDGILAWFTWLLVHIYFLTSF 385
Query: 481 EHRLKVGVSW 490
HR+ V + W
Sbjct: 386 RHRVFVLLQW 395
>gi|328950100|ref|YP_004367435.1| NADH dehydrogenase (ubiquinone) [Marinithermus hydrothermalis DSM
14884]
gi|328450424|gb|AEB11325.1| NADH dehydrogenase (ubiquinone) [Marinithermus hydrothermalis DSM
14884]
Length = 430
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 118/431 (27%), Positives = 180/431 (41%), Gaps = 61/431 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ++G GFGGL L D +V LVDQS VF P+LY++ + ++A +IA
Sbjct: 4 HIVVVGAGFGGLNAVRELSK-----DPTVRVTLVDQSNSHVFLPLLYQVAAAGLEATQIA 58
Query: 141 -PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE-----YDW 194
P A L +F R + G L E L VE YD+
Sbjct: 59 FPIRAYLRRFPRARFHLGRAE-------------------GVDLKEKTLWVEGQPIPYDY 99
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINV 253
LV++ G++ +PG AE AF TL++A + DR LS E E + + +
Sbjct: 100 LVVAAGSKSNDFGIPGVAEHAFGLKTLKEAKEIRDRILSACE----EAVHTPDPERKRAL 155
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR--RVGEFEASVK-----QPESGA 306
T + G P E A + R + Y R R+ EA + P S A
Sbjct: 156 LTWVIVGGGPTGVELAGALGELRNHVIRRDYPELDPREIRILLIEAGPRVLAHLSPASSA 215
Query: 307 -----IPNIAADKNSDKYILELQPAIKGLESQIFEADLV-LWTVGSKPLLPHVEPPNNRL 360
+ + + + + E+ P+ L++ F +W+ G L
Sbjct: 216 YAQRFLERLGIEVMTRAMVAEVTPSGVKLKNGAFIPSFTTVWSAGVA---------GAAL 266
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWN 419
LP G+ T L ++G P ++ +GD + L + +GRP P AQVA QQ AG N
Sbjct: 267 PGLPAERNGRVPTTPELHLEGDPHVYVVGDVNLLINPKTGRPYPQVAQVAIQQGTLAGRN 326
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ + +PL PF++++ G M+ LGRN A + V L G A +L+ L
Sbjct: 327 IRRHLRGQPLRPFQYKDKGNMVTLGRNHAVLETGRVR---LTGFPAWVAWLGVHLMYLTG 383
Query: 480 DEHRLKVGVSW 490
+R V +W
Sbjct: 384 GRNRFMVMTNW 394
>gi|78187436|ref|YP_375479.1| NADH dehydrogenase [Chlorobium luteolum DSM 273]
gi|78167338|gb|ABB24436.1| NADH dehydrogenase [Chlorobium luteolum DSM 273]
Length = 429
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 101/425 (23%), Positives = 183/425 (43%), Gaps = 44/425 (10%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K R+ I+GGGF G+ A V + +V L+D+ +F+P+LY++ +D +
Sbjct: 2 KKRVVIVGGGFTGMNAAR-----VLGNRADVEVTLIDRRNYHLFQPLLYQVAMSALDEGD 56
Query: 139 IAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++L+ + +K V+ + +H T+ + G VEYD+L+L
Sbjct: 57 IAAPLRNMLSIYNNITVYKGIVERVDTENH-------------TIHTDFGP-VEYDYLIL 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL---SELERRNFERLEEKGIVQAINV- 253
+ G E A TL A + R++ E R+ + +E K ++ + V
Sbjct: 103 ACGVRHHYFGNNQWEENAPGLKTLSQAKEIRRRVLEAYEAAERSNDPVERKKLLTFVIVG 162
Query: 254 --ETTICPTGTPG--NREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIP 308
T + G+ G +R K+ +L + V R+ G F + + ++
Sbjct: 163 GGPTGVELAGSIGEMSRYTLSKLYHQIDPKLTRIFIVEAAPRILGSFSPELASKATRSLE 222
Query: 309 NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD---LPL 365
+ + + ++ + ++ EA VLW G + R+ D
Sbjct: 223 QLGVQVWTSSMVNDVDENGVQIGNERIEAATVLWAAGVTAI---------RIGDNFGAET 273
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425
+ G+ + L V GHP IF GD + L +S G+PLP A VA Q+ +F G + +
Sbjct: 274 DRIGRIVVEGDLSVPGHPEIFVGGDQACLFNSEGKPLPGMAPVALQEGNFIGKTIIRDLK 333
Query: 426 DRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLK 485
+ PF++++ G+M +GRN A V + + DG L ++ L + +HR+
Sbjct: 334 GKVRKPFQYKDKGQMATIGRNRAIVE---IGNIKFDGTPAWFTWLLVHIYYLTSFKHRVF 390
Query: 486 VGVSW 490
V + W
Sbjct: 391 VLMQW 395
>gi|404328954|ref|ZP_10969402.1| putative NADH dehydrogenase [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 400
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 163/377 (43%), Gaps = 31/377 (8%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K RI ILG G+GGL T +L+++ D ++LV++++ +L+E+ +G +A
Sbjct: 3 KKRIVILGAGYGGLRTLKKLQNMHPDAD----LVLVNKNDYHCETTLLHEVAAGSTEAKG 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I ++ + F +D V+ + + G ++ E+ + YD+L+++
Sbjct: 59 ICYPIKQVVDSRQTIFIQDTVQYVDRA-------------GKKIIFEAHPPLSYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE--TT 256
LG E + + G E+A S + + R + E +E + + T+
Sbjct: 106 LGFESESFGIQGIPEYAMSISDIPSVNHIRRHIHHQLAAWQEDRDETHLTVVVGGAGFTS 165
Query: 257 ICPTGTPGNREAALKVLSAR----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAA 312
G NR L L+AR K QL V CI +P + A
Sbjct: 166 FEFLGELTNR---LPKLAARYHIDKDQL----HVICIEPTPHVLPMFNRPIAEYGSRKLA 218
Query: 313 DKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAE 372
++ I + + G E DL + G+ V + + RG+
Sbjct: 219 ERGVRFVIGRVNRVVPGHVYYKHEDDLSVIHAGTFIWTGGVRGSSVIEASGFIQKRGRVN 278
Query: 373 TDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 431
+ L V G+P I +GD SA+ D +GRP P TAQ+A QQAD A NL A I R L P
Sbjct: 279 VNADLTVPGNPEIMIIGDCSAVIDPENGRPYPTTAQIAIQQADCAAHNLNARIQGRALKP 338
Query: 432 FRFQNLGEMMILGRNDA 448
F ++ G + LGRNDA
Sbjct: 339 FVYKYKGTVCSLGRNDA 355
>gi|257054899|ref|YP_003132731.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
viridis DSM 43017]
gi|256584771|gb|ACU95904.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
viridis DSM 43017]
Length = 431
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 113/438 (25%), Positives = 191/438 (43%), Gaps = 66/438 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKP---QVLLVDQSERFVFKPMLYELLSGEVDAW 137
RI I GGG+ GLYTAL+L Q + +P +V +V+ V++P+L E+ SG ++
Sbjct: 4 RILIAGGGYVGLYTALQL-----QKNMQPGEVEVTVVNPENFMVYRPLLPEVASGTLEPR 58
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+L + +F + L + P A G T E YD LVL
Sbjct: 59 HAVVPLRAVLRKS--RFVSGTLTGLDVERRVATVQPPA---GPTREFE------YDELVL 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE----------RR--------- 237
LGA KL +PG + F++L +A + D L +LE RR
Sbjct: 108 GLGATSKLLPIPGLVDHGIGFNSLAEAAYLRDHVLGQLELAHATNDPELRRCALTFVFVG 167
Query: 238 -NFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296
+ +E +Q + V+ G PG A ++ + + +LG + + E
Sbjct: 168 GGYTGVEAIAELQDMAVDVL---EGYPGLDPAEMRWILIEAMDRILGTVSDDLAELATTE 224
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP--LLPHVE 354
+ + + I ++++ L+L K D ++W G++P +L +
Sbjct: 225 LTARGID---IRTGTLLESAENGRLQLSDGTK------LTTDTLVWVAGTRPQSILGEL- 274
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQA 413
LP++ RG+ D+TL V GH I++ GD +A+ D G P +AQ A +QA
Sbjct: 275 -------GLPVDERGRVVVDDTLRVNGHANIWSAGDCAAVPDLVKGGTCPPSAQYAVRQA 327
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
G NL + + + FR+++ GE + LG+N A V G ++G + + R+ Y
Sbjct: 328 RQLGDNLLRTVRGQAVKSFRYRSRGEFVTLGKNKAVAE---VLGCKINGSLAWTLRRAYY 384
Query: 474 LIRLPTDEHRLKVGVSWL 491
++P ++V WL
Sbjct: 385 ATQIPMLNRTVRVLGDWL 402
>gi|403510307|ref|YP_006641945.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Nocardiopsis alba ATCC BAA-2165]
gi|402799133|gb|AFR06543.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Nocardiopsis alba ATCC BAA-2165]
Length = 458
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 114/435 (26%), Positives = 182/435 (41%), Gaps = 60/435 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I I+GGG+ G+YTA RLE + + + + ++D + ++P L E G I
Sbjct: 20 PHILIVGGGYLGMYTARRLEKKLGAGEAR--ITVIDPNSYMTYQPFLPETAGGN-----I 72
Query: 140 APRFADLLANTGVQFFK--DRVKLLCPS----DHLGVNGPMACTHGGTVLLESGL----I 189
+PR N V K DRV++L DH TV E +
Sbjct: 73 SPR------NVVVPLRKVFDRVRVLGGRVVRIDHAD----------NTVRYEPNVGEPQT 116
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQ 249
+ YD+LV++ GA + +PG AE+ T+E+A + + L + + ++
Sbjct: 117 LHYDYLVMAAGAVSRTLPIPGLAEWGIGIKTVEEAAYLRNHV--LNQLTIADSTDDKDIR 174
Query: 250 AINVETTICPTGTPGNRE-AALKVLSARKVQL--------VLGYFVRCIRRVGEFEASVK 300
A + G G A L+ L V+L V Y + ++ V
Sbjct: 175 AKALNFVFVGGGFAGAEAIAELEDLVRDAVRLYPSIDQSEVKFYLIEAADKI---LPEVG 231
Query: 301 QPESGAIPNIAADKNSD---KYILE--LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
G N ++ D K LE + IK + F+A ++WT G KP
Sbjct: 232 PEVGGKALNQLRRRDIDVRLKTFLESAVDQHIKLSDGTEFDAGTLVWTAGVKP------S 285
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
P DLPL +G +T E L V G +FA GD++ + D +G P AQ A +QA
Sbjct: 286 PVVSASDLPLGPKGHVDTSEYLTVNGTDNVFAGGDNAQVPDGNGGYYPPNAQNAVRQAPV 345
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
N+ A + L ++ +NLG + LG + A + L+G + A + +L+
Sbjct: 346 LADNIIATLRGNDLTAYKHKNLGAVAGLGLHKGAA--QLFGKIKLNGRLAWYAHRSYHLL 403
Query: 476 RLPTDEHRLKVGVSW 490
+PT +L+V W
Sbjct: 404 AVPTFNRKLRVLSDW 418
>gi|257069847|ref|YP_003156102.1| NADH dehydrogenase, FAD-containing subunit [Brachybacterium faecium
DSM 4810]
gi|256560665|gb|ACU86512.1| NADH dehydrogenase, FAD-containing subunit [Brachybacterium faecium
DSM 4810]
Length = 483
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 111/438 (25%), Positives = 189/438 (43%), Gaps = 68/438 (15%)
Query: 80 PRICILGGGFGGLYT--ALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
P + ILGGGF G + ALR D + +V L+D++ F+P+LY++ + ++
Sbjct: 23 PHVVILGGGFAGAHAVGALR--------DARVRVTLIDRNVYKTFQPLLYQVATAGLNPG 74
Query: 138 EIAPRFADL-LANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
++ L L +++ + V+ + P + ++ G E G YD+L+
Sbjct: 75 DVTMFLRGLSLKVPNMRYRQGEVEGVDPERKV-----VSLDEGQKGRHEIG----YDYLI 125
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVET 255
++ GA PGA E A P T A + DR SELER + E + + V
Sbjct: 126 VANGATTTYFGTPGAEEHAMPMYTRSQALAIRDRIFSELERSSREAGQSHDKLHVCIV-- 183
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGY--------FVRCIRR----VGEFEASVKQPE 303
G P E A + R +L + Y V ++R + EF +Q
Sbjct: 184 ----GGGPTGVEIAGALADFRMQELDILYPEMDPGTLQVTVLQRGDELLKEFSTKYRQ-- 237
Query: 304 SGAIPNIAADKNSDKYI-LELQPAIKGL--------ESQIFEADLVLWTVGSKPLLPHVE 354
AAD+ D+ + L+L +K + + I E+D+ +W G
Sbjct: 238 ------YAADELRDRGVTLQLGRGVKEVGYDHVVLDDGSILESDITIWAAGV------AI 285
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
P + P + RG+ D+ L VKG P ++A GD + + PLP AQ A Q +
Sbjct: 286 PKSVSEWGFPQDKRGRLAVDDYLQVKGFPGVYAAGDIAGQDE----PLPQLAQPAIQTGE 341
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
A N+ A + +P F + NLG M +GR+ A + G L G +G +A ++
Sbjct: 342 AAARNIAAEVAGKPRKTFAYTNLGTMATIGRHAAIAEIPVLGG--LSGSVGWAAWLGVHI 399
Query: 475 IRLPTDEHRLKVGVSWLT 492
+++ ++ V ++ L+
Sbjct: 400 MKMIGHRNQRAVAMNLLS 417
>gi|421859050|ref|ZP_16291294.1| NADH dehydrogenase [Paenibacillus popilliae ATCC 14706]
gi|410831390|dbj|GAC41731.1| NADH dehydrogenase [Paenibacillus popilliae ATCC 14706]
Length = 398
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 169/412 (41%), Gaps = 103/412 (25%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ A RL+ + + + V LV++ + F L+ +G D++E
Sbjct: 5 PKIVILGAGYGGIMAAQRLQKEL--NFNEADVTLVNKHDYHYFTTHLHMPAAG-TDSFEN 61
Query: 140 A-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
A + L+ + F K VK + D V+LE G + +D+LV+
Sbjct: 62 AYVSISKLIDEFKIDFVKSTVKEIRVQDK-------------KVILEDGTL-SFDYLVIG 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK------------- 245
LG EP+ +PG E+AF ++ ++ R+ R+ E + F++ E K
Sbjct: 108 LGGEPETFGIPGLGEYAFSIRSI-NSVRIIREHIEHQFALFKQDESKKERLSFIVGGAGF 166
Query: 246 -GI-----------------------VQAINVET--TICPTGTPGNREAALKVLSARKVQ 279
GI V N+E T P PG E A+ VL + V
Sbjct: 167 TGIEFVGELSDRIPQLCKQFDVDPKRVHIYNIEAAPTALPGFDPGLVEYAIDVLKKKDVT 226
Query: 280 LVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 338
L ++ C PE +L IK A
Sbjct: 227 FKLATAIKEC------------TPEG--------------VVLATGEEIK--------AS 252
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD- 396
V+WT G + N + A RG+ + DE L GH IF +GD+S + +
Sbjct: 253 TVVWTGGIRG--------NRLIEQAGFEAMRGRVKVDEYLRAPGHDNIFIIGDNSLMMNP 304
Query: 397 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
++ RP P TAQ+A QQ N+ A+I ++PL F F N G + LG+ +A
Sbjct: 305 ANDRPYPPTAQMAMQQGPVCTSNIIASIRNQPLKKFEFHNKGTVASLGKGEA 356
>gi|384214792|ref|YP_005605956.1| NADH dehydrogenase [Bradyrhizobium japonicum USDA 6]
gi|354953689|dbj|BAL06368.1| NADH dehydrogenase [Bradyrhizobium japonicum USDA 6]
Length = 420
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 108/432 (25%), Positives = 173/432 (40%), Gaps = 42/432 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL T RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 7 RVVIVGAGFGGLETTYRLAG------APVEITLIDRRNHHLFQPLLYQVATASLATSEIA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHL-GVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
L+ +DR ++ + GV+ C VL++ G V YD LVL+
Sbjct: 61 WPVRHLM--------RDRREVTTLFATVSGVDADRRC-----VLIDDGSEVPYDTLVLAT 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTIC 258
GA +FA TLEDA + R L ER E K + V
Sbjct: 108 GARHAYFGHDEWEQFAPGLKTLEDATTLRRHILVAFERAERETDPAKRAARLTFVIVGAG 167
Query: 259 PTGTP----------GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIP 308
PTG A + + K ++VL R + F + ++
Sbjct: 168 PTGVELAGTIAEMAHHTLPADFRNIDTHKARVVL--IEAGPRVLAGFPDDLSAYAQASLE 225
Query: 309 NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 368
I + + + E+ ++ EA +W G + P P +
Sbjct: 226 KIGVEVVLGQVVTEINREGVVFGGKLLEAKTRIWAAGVRA------SPAAEWLGAPSDRA 279
Query: 369 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
G+ E ++ L + GHP IFA+GD+ + G+P+P A A QQ + A +
Sbjct: 280 GRVEVEDDLTIPGHPEIFAIGDTVLINAWEGKPVPGIAPAAKQQGRHVAETIKARLRGEN 339
Query: 429 LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGV 488
FR+++ G + +G+ A + V+ L G I +A++ L HRL V +
Sbjct: 340 KGAFRYKHSGSLAQIGKRLAVIDFGKVK---LRGTIAWWIWGIAHIYFLIGLRHRLSVAL 396
Query: 489 SWLTKSAIDSVA 500
SWL A D A
Sbjct: 397 SWLWIYARDQRA 408
>gi|72160836|ref|YP_288493.1| NADH dehydrogenase [Thermobifida fusca YX]
gi|71914568|gb|AAZ54470.1| NADH dehydrogenase [Thermobifida fusca YX]
Length = 458
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 106/426 (24%), Positives = 174/426 (40%), Gaps = 42/426 (9%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+GGG+ G+YTA RLE + + + + +VD + ++P L E +G + +
Sbjct: 20 PHVLIVGGGYLGMYTAKRLEKKLGPGEAR--ITVVDPNSYMTYQPFLPETAAGSISPRNV 77
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L T V RV + +H G L YD+LV++
Sbjct: 78 VVPLRKVLRRTRV--LNGRVVRI---EHAQRRVECVTNEGERRELT------YDYLVMAA 126
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
GA + +PG AE T+++A + + LE+ N + V+ +
Sbjct: 127 GAVSRTLPIPGLAEHGIGIKTVQEAAYLRNHV--LEQLNIADSTDDPRVRRKALNFVFVG 184
Query: 260 TGTPGNR---------EAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA---- 306
G G A ++ + + + Y + R+ PE GA
Sbjct: 185 GGFAGAEAIAELEDLARDATRIYPSISIDDLHFYLIEAADRI----LPEVGPEVGAKALQ 240
Query: 307 -IPNIAADKNSDKYILE-LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 364
+ N D ++ + IK + FEA ++WT G KP P + DLP
Sbjct: 241 QLRNRGIDVRLSTFLESAVDQRIKLSDGTEFEAGTLVWTAGVKP------SPVVQASDLP 294
Query: 365 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 424
L +G +T E L V+G FA GD++ + D +G P AQ A +QA N+ A +
Sbjct: 295 LGPKGHVDTTEYLTVRGVENAFAGGDNAQVPDGNGGYYPPNAQNAVRQAPVLADNIIATL 354
Query: 425 NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 484
+ L P+R +NLG + LG A V L G A + +L+ +PT ++
Sbjct: 355 RGKELKPYRHKNLGAVAGLGMYKGAA--QVFGAVKLTGLPAWLAHRSYHLLAVPTFNRKM 412
Query: 485 KVGVSW 490
+V W
Sbjct: 413 RVLADW 418
>gi|418071079|ref|ZP_12708353.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus
rhamnosus R0011]
gi|423080229|ref|ZP_17068854.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus
rhamnosus ATCC 21052]
gi|357538573|gb|EHJ22593.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus
rhamnosus R0011]
gi|357543372|gb|EHJ25395.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus
rhamnosus ATCC 21052]
Length = 395
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/376 (23%), Positives = 163/376 (43%), Gaps = 37/376 (9%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ G+ L L K + +VDQ+ + L+E+ +G V A +I
Sbjct: 4 VVILGAGYAGIRAVKTLSKLA---PKGTTLTVVDQNANHEERTQLHEVAAGTVPATKITF 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L VQF + +V + S L V+LE+ + YD+L+++LG
Sbjct: 61 NIQQVLPKD-VQFIQSKVSKVDVSSKL-------------VVLENHAPLRYDYLIIALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
+ +PGAAE A P + A + + + E N+++ ++ + I
Sbjct: 107 RSEDFGLPGAAENALPLDNVTSAETIAKTI-EQRVANYKQSQDPKDLTVIVAGAGFTGVE 165
Query: 262 TPGNREAALKVLSARK----VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 317
G +L L+ + V+++ R + F+ + + + +
Sbjct: 166 LLGELTHSLPALAKKYDTPPVKII--SMEMATRILPMFDEKLANYAMDYLKSHGVTMMTG 223
Query: 318 KYILELQPAI----KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR-GQAE 372
I +++P G + + E + ++WTVG ++ + D N R +
Sbjct: 224 SKITKIEPNAVVYADGDQEKKVEGNTIIWTVGVSG--------SDVIADSGFNQRRNRVV 275
Query: 373 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPF 432
L + HP +F +GD SA+ +GRP P TAQ++ Q+ D AG N+ AA+N +PL F
Sbjct: 276 VSNHLNLTDHPEVFIIGDVSAVMTDAGRPYPTTAQISSQEGDHAGKNVAAALNGQPLTDF 335
Query: 433 RFQNLGEMMILGRNDA 448
+++ G + LG D
Sbjct: 336 VYKSKGTVASLGSQDG 351
>gi|383774975|ref|YP_005454044.1| NADH dehydrogenase [Bradyrhizobium sp. S23321]
gi|381363102|dbj|BAL79932.1| NADH dehydrogenase [Bradyrhizobium sp. S23321]
Length = 420
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/436 (24%), Positives = 175/436 (40%), Gaps = 50/436 (11%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 7 RVVIVGAGFGGLEATYRLAG------APVEITLIDRRNHHLFQPLLYQVATASLATSEIA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHL-GVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
L+ +DR ++ + GV+ C VL++ G V YD LVL+
Sbjct: 61 WPIRHLM--------RDRREVTTLFATVSGVDADRRC-----VLIDDGSEVPYDTLVLAT 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTIC 258
GA +FA TLEDA + R L ER E + + V
Sbjct: 108 GARHAYFGHDEWEQFAPGLKTLEDATTLRRHILLAFERAERETDPARRAARLTFVIVGAG 167
Query: 259 PTGT--------------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 304
PTG PG+ + + K ++VL R + F +
Sbjct: 168 PTGVELAGTIAEMAHHTLPGD----FRNIDTTKARVVL--IEAGPRVLAGFPDDLSAYAQ 221
Query: 305 GAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 364
++ I + + + E+ ++ EA +W G + P P
Sbjct: 222 ASLERIGVEVVLGQAVTEINREGVVFGGKLLEAKTRIWAAGVRA------SPAAEWLGAP 275
Query: 365 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 424
+ G+ + + L + GHP IFA+GD+ ++ G+P+P A A QQ + A +
Sbjct: 276 SDRAGRVQVEADLTIPGHPEIFAIGDTVSIDAWEGKPVPGIAPAAKQQGKHVAETIKARL 335
Query: 425 NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 484
PFR+++ G + +G+ A + V+ L G I +A++ L HRL
Sbjct: 336 RGAATGPFRYKHAGSLAQIGKRLAVIDFGKVK---LRGTIAWWIWGIAHIYFLIGLRHRL 392
Query: 485 KVGVSWLTKSAIDSVA 500
V +SWL A D A
Sbjct: 393 SVALSWLWIYARDQRA 408
>gi|421770143|ref|ZP_16206844.1| NADH dehydrogenase [Lactobacillus rhamnosus LRHMDP2]
gi|421772779|ref|ZP_16209432.1| NADH dehydrogenase [Lactobacillus rhamnosus LRHMDP3]
gi|411182671|gb|EKS49816.1| NADH dehydrogenase [Lactobacillus rhamnosus LRHMDP2]
gi|411183193|gb|EKS50333.1| NADH dehydrogenase [Lactobacillus rhamnosus LRHMDP3]
Length = 395
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 163/375 (43%), Gaps = 37/375 (9%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ G+ L L K+ + +VDQ+ + L+E+ +G V A +I
Sbjct: 4 VVILGAGYAGIRAVKTLSKLA---PKETTLTVVDQNANHEERTQLHEVAAGTVPATKITF 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L VQF + +V + S L V+LE+ + YD+L+++LG
Sbjct: 61 NIQQVLPKD-VQFIQSKVSKVDVSSKL-------------VVLENHAPLRYDYLIIALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
+ +PGAAE A P + A + + + E N+++ ++ + I
Sbjct: 107 RSEDFGLPGAAENALPLDNVTSAETIAKTI-EQRVANYQQSQDPKDLTVIVAGAGFTGVE 165
Query: 262 TPGNREAALKVLSARK----VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 317
G +L L+ + V+++ R + F+ + + + +
Sbjct: 166 LLGELTHSLPALAKKYDTPPVKII--SMEMATRILPMFDEKLANYAMDYLKSHGVTMMTG 223
Query: 318 KYILELQPAI----KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR-GQAE 372
I +++P G + + E + ++WTVG ++ + D N R +
Sbjct: 224 SKITKIEPNAVVYADGDQEKKVEGNTIIWTVGVSG--------SDVIADSGFNQRRNRVV 275
Query: 373 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPF 432
L + HP +F +GD SA+ +GRP P TAQ++ Q+ D AG N+ AA+N +PL F
Sbjct: 276 VSNHLNLTDHPEVFIIGDVSAVMTDAGRPYPTTAQISSQEGDHAGKNVAAALNGQPLTDF 335
Query: 433 RFQNLGEMMILGRND 447
++ G + LG D
Sbjct: 336 VYKPKGTVASLGSQD 350
>gi|428309389|ref|YP_007120366.1| NADH dehydrogenase, FAD-containing subunit [Microcoleus sp. PCC
7113]
gi|428251001|gb|AFZ16960.1| NADH dehydrogenase, FAD-containing subunit [Microcoleus sp. PCC
7113]
Length = 441
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/428 (25%), Positives = 181/428 (42%), Gaps = 47/428 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PR+ I+G GFGGL A L ++LL+D++ F P+LY++ E++
Sbjct: 5 RSPRVVIVGAGFGGLKAAQLLAR------SGVEILLIDRNNYHTFVPLLYQVAVAELEPE 58
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+IA + R+ P+ + G V+ + YD+L+L
Sbjct: 59 QIA-------------YPVRRILRRIPNARFVMAEVKQIDFAGQVVETEDSAISYDFLIL 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFER-LEEKGIVQAINVETT 256
+ G++ + VPGA E+ P TLE+A + + FE+ + EK Q + T
Sbjct: 106 ATGSKSQYLGVPGAREYTLPMKTLEEAVALRNHIFSC----FEQAVREKDATQRQQLLTF 161
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGY------FVRCI------RRVGEFEASVKQPES 304
+ G P E A ++ LV Y VR I R V E+ +
Sbjct: 162 VIVGGGPTGVELAGALVELMHGPLVKDYPTLDLQQVRVILLQSGDRLVAEYPQRLGDYTQ 221
Query: 305 GAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 363
+ + + ++ P A+ + A ++WT G + P PP L
Sbjct: 222 KQLRTRGVKVHLQAKVSQVTPQAVHLQDGTTILAKTIIWTAGVEASPP---PPTGELFP- 277
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
+A+G+ TL + P+++A+GD + + + G+PLPA A VA QQ N+
Sbjct: 278 --SAKGKVAVLPTLQLPNQPQVYAIGDVADV-EYKGQPLPAVAPVAIQQGASVANNIKRQ 334
Query: 424 INDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHR 483
+ FR+++ G I+ RN A V+ + + +TL G G +L LP +
Sbjct: 335 LRGLSPQTFRYKDKGRAAIIARN-AGVAQT--DKLTLMGFPGWFLWLGIHLYYLPGLRNS 391
Query: 484 LKVGVSWL 491
L V +SW+
Sbjct: 392 LLVFISWV 399
>gi|423065290|ref|ZP_17054080.1| DoxX family protein [Arthrospira platensis C1]
gi|406713200|gb|EKD08372.1| DoxX family protein [Arthrospira platensis C1]
Length = 569
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 197/433 (45%), Gaps = 61/433 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K RI I+G GFGGL TA RL + VLL+D++ F P+LY++ +G +
Sbjct: 4 KSDRIVIVGAGFGGL-TATRLLA-----KAGANVLLIDRNCYHTFIPLLYQVATGLLYPH 57
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I P + V+F + V D + T G + YD LV
Sbjct: 58 QIVYPLQSAFKKYPNVEFIQTNV------DRINYEYQWVDTDHGQI--------RYDILV 103
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
++ G+ P+LD +PGAA+++ +TLEDA V + + RR LE + I +A + T
Sbjct: 104 IATGSRPQLDHIPGAAKYSLTLNTLEDAAVVRHHIVDRIRRAI--LEPEPIDRA-RLLTF 160
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--AIPNIAADK 314
+ G P E A ++ +++ +LG+ RR+ A V SG +PN +
Sbjct: 161 VIVGGGPTGVELAGGLID--QLRALLGW-----RRLFPL-AKVILVHSGDRLLPNFSQGF 212
Query: 315 NS--DKYILELQPAI-----------KGLE---SQIFEADLVLWTVGSKPLLPHVEPPNN 358
++ ++++ +L ++ +G+E + A ++WT G + V+ P +
Sbjct: 213 SAYCERHLRQLGVSVWLNRRVLRVNSQGVELDTGEAIAAPTIIWTAGVQ-----VDHP-S 266
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
+L + A+G+ + L V HP+++A+GD + L G L A A QQ +
Sbjct: 267 QLDQISTAAKGKIIVEPILRVPDHPKVYAIGDVAFLWPDHG--LSGIAPEAIQQGEAVAT 324
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
N+ + PFR+ + G+ I+ R +S + + G +G + ++ LP
Sbjct: 325 NILHQLRGTSPQPFRYIDKGKAAIISRYAGILS---CDRLNNTGFLGWLTWLVIHMCYLP 381
Query: 479 TDEHRLKVGVSWL 491
+RL VG +W
Sbjct: 382 GWRNRLTVGYNWF 394
>gi|21673208|ref|NP_661273.1| NADH dehydrogenase [Chlorobium tepidum TLS]
gi|21646290|gb|AAM71615.1| NADH dehydrogenase [Chlorobium tepidum TLS]
Length = 430
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 108/422 (25%), Positives = 172/422 (40%), Gaps = 38/422 (9%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K ++ I+GGGF GL TA L + K +V L+D+ +F+P+LY++ + +
Sbjct: 2 KKKVVIVGGGFTGLNTARIL-----SNRKDVEVTLIDRKNYHLFQPLLYQVAMAALGEGD 56
Query: 139 IAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++LA V FK V C D + T G + EYD+LVL
Sbjct: 57 IATPLRNMLAGYDNVTVFKGNV---CNVD---LEQKKVKTDFGDI--------EYDYLVL 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL----ERRN--FERLEEKGIVQAI 251
+ GA+ E A L A + R++ E ER N ER ++ V
Sbjct: 103 ACGAQHHYFGKNDWEEHAPGLKNLAQASEIRRRVMEAYEAAERTNDMKERKKQLTFVIVG 162
Query: 252 NVETTICPTGTPG--NREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIP 308
T + G+ G +R K +L + V R+ G F + + +
Sbjct: 163 GGPTGVELAGSIGEMSRYTLSKFYRHIDPKLTRIFIVEAAERILGTFSPELSSKATRELE 222
Query: 309 NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 368
+ + + ++ + + EA VLW G K E N + R
Sbjct: 223 KLGVQVWTSSMVSDVDADGVQIGRERIEAATVLWAAGVKA----SEIGQNMGVQTDRSGR 278
Query: 369 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
E D L + GHP +F GD + +G LP A VA Q+ G + + +P
Sbjct: 279 IMVEAD--LSLPGHPEVFVGGDQACYTLENGSTLPGMAPVAMQEGKAIGRMILDDLKGKP 336
Query: 429 LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGV 488
PF++++ G+M +GRN A V + + DG I L ++ L T +HR+ V +
Sbjct: 337 RKPFKYRDKGQMATIGRNRAIVE---IGNLKFDGAIAWFTWLLVHIYYLSTFKHRVFVLM 393
Query: 489 SW 490
W
Sbjct: 394 QW 395
>gi|430750923|ref|YP_007213831.1| NADH dehydrogenase, FAD-containing subunit [Thermobacillus composti
KWC4]
gi|430734888|gb|AGA58833.1| NADH dehydrogenase, FAD-containing subunit [Thermobacillus composti
KWC4]
Length = 397
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 168/414 (40%), Gaps = 108/414 (26%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ TALRL+ + ++ V LV++ + L+ +G
Sbjct: 5 PKIVILGAGYGGVMTALRLQKQLNYNE--ADVTLVNKHDYHYITTHLHMPAAGTDSPENA 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L+ + F K V + P D V+LE G + YD+LV+ +
Sbjct: 63 RVSISKLIDEFKIDFVKSTVVQIRPQDR-------------KVILEDGTL-SYDYLVIGV 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFER------------------ 241
G EP+ +PG E+A ++ ++ R+ R+ E + ++R
Sbjct: 109 GGEPETFGIPGLKEYALNIRSI-NSVRLIREHIEYQFAKYKREPHRTDYLTFIVGGAGFT 167
Query: 242 -LEEKG------------------IVQAINVETTICPTGTPGNR----EAALKVLSARKV 278
+E G +V+ IN+E PT PG E A+ VL + V
Sbjct: 168 GIEFVGELADRIPQLCREFDVDPQLVKLINIEA--APTALPGFDPELVEYAMDVLRKKGV 225
Query: 279 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP--AIKGLESQIFE 336
+G ++ E +P I G E + +
Sbjct: 226 TFRIGTPIK----------------------------------ECKPDGVIVG-EGEEIK 250
Query: 337 ADLVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSSAL 394
A V+WT G + NRL + RG+ + DE L GH ++ +GD+S +
Sbjct: 251 AQTVIWTGGIR---------GNRLIEEAGFETMRGRVKVDEYLRAPGHDNVYVVGDNSLV 301
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ GRP P TAQ+A QQ NL A+I ++ L F +++ G + LG+ +A
Sbjct: 302 FNEEGRPYPPTAQIAMQQGVAVAHNLVASIRNQALKKFEYKHKGTVASLGKGEA 355
>gi|409992041|ref|ZP_11275255.1| pyridine nucleotide-disulfide oxidoreductase [Arthrospira platensis
str. Paraca]
gi|291569629|dbj|BAI91901.1| probable NADH dehydrogenase [Arthrospira platensis NIES-39]
gi|409937093|gb|EKN78543.1| pyridine nucleotide-disulfide oxidoreductase [Arthrospira platensis
str. Paraca]
Length = 569
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 113/436 (25%), Positives = 196/436 (44%), Gaps = 67/436 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K RI I+G GFGGL TA RL + VLL+D++ F P+LY++ +G +
Sbjct: 4 KSDRIVIVGAGFGGL-TATRLLA-----KAGANVLLIDRNCYHTFIPLLYQVATGLLYPH 57
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGP---MACTHGGTVLLESGLIVEYD 193
+I P + V+F + V+ G+N + HG + YD
Sbjct: 58 QIVYPLQSAFKKYPNVEFIQTNVE--------GINDQYQWIDTDHGQ---------IRYD 100
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINV 253
LV++ G+ P+LD +PGAA+++ +TL+DA V + + RR LE + I +A +
Sbjct: 101 ILVIATGSRPQLDHIPGAAQYSLTLNTLQDAAVVRHHIVDRIRRAI--LEPEPIDRA-RL 157
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--AIPNIA 311
T + G P E A ++ +++ +LG+ RR+ A V SG +PN +
Sbjct: 158 LTFVIVGGGPTGIELAGGLID--QLRALLGW-----RRLFPL-AKVILVHSGDRLLPNFS 209
Query: 312 ADKNS--DKYILELQPAI-----------KGLE---SQIFEADLVLWTVGSKPLLPHVEP 355
++ ++++ +L ++ +G+E + A ++WT G + P
Sbjct: 210 QRFSAYCERHLRQLGVSVWLNRRVLRVNSQGVELDTGEAIAAPTIIWTAGVQADHP---- 265
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
++L + A+G+ + L V+ HP+++A+GD + L G L A A QQ +
Sbjct: 266 --SQLDQISTAAKGKIIVEPILQVRDHPKVYAIGDVAFLWPEHG--LSGIAPEAIQQGEA 321
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
N+ + PFR+ + G+ I+ R +S + G + L Y
Sbjct: 322 VATNILHQLRGTYPQPFRYIDKGKAAIISRYAGILSCDRLNSTGFWGWLTWLVIHLCY-- 379
Query: 476 RLPTDEHRLKVGVSWL 491
LP +RL VG +W
Sbjct: 380 -LPGWRNRLTVGYNWF 394
>gi|376005356|ref|ZP_09782870.1| DoxX family protein [Arthrospira sp. PCC 8005]
gi|375326283|emb|CCE18623.1| DoxX family protein [Arthrospira sp. PCC 8005]
Length = 569
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 112/433 (25%), Positives = 195/433 (45%), Gaps = 61/433 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K RI I+G GFGGL TA RL + VLL+D++ F P+LY++ +G +
Sbjct: 4 KSDRIVIVGAGFGGL-TATRLLA-----KAGANVLLIDRNCYHTFIPLLYQVATGLLYPH 57
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I P + V+F + V D + T G + YD LV
Sbjct: 58 QIVYPLQSAFKKYPNVEFIQTNV------DRINYEYQWVDTDHGQI--------RYDILV 103
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
++ G+ P+LD +PGAA+++ +TLEDA V + + RR LE + I +A + T
Sbjct: 104 IATGSRPQLDHIPGAAKYSLTLNTLEDAAVVRHHIVDRIRRAI--LEPEPIDRA-RLLTF 160
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--AIPNIAADK 314
+ G P E A ++ +++ +LG+ RR+ A V SG +PN +
Sbjct: 161 VIVGGGPTGVELAGGLID--QLRALLGW-----RRLFPL-AKVILVHSGDRLLPNFSQGF 212
Query: 315 NS--DKYILELQPAI-----------KGLE---SQIFEADLVLWTVGSKPLLPHVEPPNN 358
++ ++++ +L ++ +G+E + A ++WT G + P +
Sbjct: 213 SAYCERHLRQLGVSVWLNRRVLRVNSQGVELDTGEAIAAPTIIWTAGVQADHP------S 266
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
+L + A+G+ + L V HP+++A+GD + L G L A A QQ +
Sbjct: 267 QLDQISTAAKGKIIVEPILQVPDHPKVYAIGDVAFLWPDHG--LSGIAPEAIQQGEAVAT 324
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
N+ + PFR+ + G+ I+ R +S + + G +G + ++ LP
Sbjct: 325 NILHQLRGTSPQPFRYIDKGKAAIISRYAGILS---CDRLNNTGFLGWLTWLVIHMCYLP 381
Query: 479 TDEHRLKVGVSWL 491
+RL VG +W
Sbjct: 382 GWRNRLTVGYNWF 394
>gi|307592199|ref|YP_003899790.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
gi|306985844|gb|ADN17724.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
Length = 454
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 17/151 (11%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+GGGF GL+ AL L + V+L+D +ERF FKP+LYE SG+++ ++
Sbjct: 7 QTIIIGGGFTGLFAALHLT----HNHYPRSVILIDPNERFCFKPLLYEYFSGQMEPMQVV 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
PR+ +LL +GV F +D V+ + + + L SG I Y LVL++G
Sbjct: 63 PRYEELLQGSGVIFVQDAVQAINLQEQ-------------EIQLISGTIYNYSNLVLAVG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKL 231
+ + GA EFAFP + +DA +DR L
Sbjct: 110 SITNYFGITGAKEFAFPLWSQQDAIALDRHL 140
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 16/165 (9%)
Query: 331 ESQIFEADLVLWTVGS--KPLLPHVE-PPNNRLHDLPLNARGQAETDETLCVKGHPRIFA 387
+++ ++ +W GS PL+ ++ P NR ++ G+ TL + P +FA
Sbjct: 254 QTKTIQSATTIWATGSSTHPLIKNLAIPQENR------DSHGRLLVTPTLQLLDFPEVFA 307
Query: 388 LGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA-AINDRPLLPFRFQNLGEMMILGRN 446
GD +A+ +SS LP TAQVA+QQ NL A A+ +P P + G ++ LG
Sbjct: 308 GGDCAAIENSS---LPPTAQVAYQQGAEIAHNLTALALGQQPR-PAKINLRGTLLKLGLE 363
Query: 447 DAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+AA + + +DG +GH R+ YL LPT H K WL
Sbjct: 364 NAAAN--IYDKFEVDGELGHLIRQGTYLELLPTPIHNFKATAEWL 406
>gi|312109668|ref|YP_003987984.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. Y4.1MC1]
gi|336234086|ref|YP_004586702.1| NADH dehydrogenase (ubiquinone) [Geobacillus thermoglucosidasius
C56-YS93]
gi|423718783|ref|ZP_17692965.1| NADH dehydrogenase [Geobacillus thermoglucosidans TNO-09.020]
gi|311214769|gb|ADP73373.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. Y4.1MC1]
gi|335360941|gb|AEH46621.1| NADH dehydrogenase (ubiquinone) [Geobacillus thermoglucosidasius
C56-YS93]
gi|383368385|gb|EID45658.1| NADH dehydrogenase [Geobacillus thermoglucosidans TNO-09.020]
Length = 407
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 165/390 (42%), Gaps = 50/390 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP + ILG G+GGL T +RL+ LV ++ + LV++++ L+E +G +
Sbjct: 5 KKPNVVILGAGYGGLMTTVRLQKLVGMNE--ANITLVNKNDYHYETTWLHEASAGTLHHD 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +D++ V F KD V + P + VL+E+G I YD+LV+
Sbjct: 63 RVRYPISDVIDRNKVNFVKDTVVKILPDEK-------------KVLMENGEIA-YDYLVI 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+LG E + + G E+AF S + +A R R+ E + + EEK TI
Sbjct: 109 ALGFESETFGIKGLKEYAFSISNV-NAARQIREHIEYQFATYNTEEEKR-----EERLTI 162
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGY-------FVRCIR----RVGEFEASVKQPESGA 306
G L L R QL Y V C+ + F+ + + G
Sbjct: 163 VVGGAGFTGIEFLGELVNRLPQLCREYDIDPHKVRVICVEAAPTALPGFDPELVEYAVGQ 222
Query: 307 IPNIAADKNSDKYILELQP----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + I E P KG + + +A V+W G + +R+ D
Sbjct: 223 LERKGVEFKIGTAIKECTPDGIIVAKGDDVEEIKAGTVVWAAGVR---------GSRVVD 273
Query: 363 LP--LNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQADFAGWN 419
RG+ + D L V G IF +GD S + + + RP P TAQ+A Q+ + N
Sbjct: 274 ESGFEAMRGRIKVDPFLRVPGREDIFVVGDCSLVINEETNRPYPPTAQIAMQEGELCAKN 333
Query: 420 LWAAINDR-PLLPFRFQNLGEMMILGRNDA 448
L I + L PFR G + LG +DA
Sbjct: 334 LAVLIRQQGELQPFRPDIKGTVCSLGHDDA 363
>gi|199597879|ref|ZP_03211305.1| NADH dehydrogenase, FAD-containing subunit [Lactobacillus rhamnosus
HN001]
gi|258509542|ref|YP_003172293.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus
rhamnosus GG]
gi|385829165|ref|YP_005866937.1| NADH dehydrogenase [Lactobacillus rhamnosus GG]
gi|199591315|gb|EDY99395.1| NADH dehydrogenase, FAD-containing subunit [Lactobacillus rhamnosus
HN001]
gi|257149469|emb|CAR88442.1| Pyridine nucleotide-disulphide oxidoreductase [Lactobacillus
rhamnosus GG]
gi|259650810|dbj|BAI42972.1| NADH dehydrogenase [Lactobacillus rhamnosus GG]
Length = 395
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/376 (23%), Positives = 162/376 (43%), Gaps = 37/376 (9%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ G+ L L K + +VDQ+ + L+E+ +G V A +I
Sbjct: 4 VVILGAGYAGIRAVKTLSKLA---PKGTTLTVVDQNANHEERTQLHEVAAGTVPATKITF 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L VQF + +V + S L V+LE+ + YD+L+++LG
Sbjct: 61 NIQQVLPKD-VQFIQSKVSKVDVSSKL-------------VVLENHAPLRYDYLIIALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
+ +PGAAE A P + A + + + E N+++ ++ + I
Sbjct: 107 RSEDFGLPGAAENALPLDNVTSAETIAKTI-EQRVANYKQSQDPKDLTVIVAGAGFTGVE 165
Query: 262 TPGNREAALKVLSARK----VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 317
G +L L+ + V+++ R + F+ + + + +
Sbjct: 166 LLGELTHSLPALAKKYDTPPVKII--SMEMATRILPMFDEKLANYAMDYLKSHGVTMMTG 223
Query: 318 KYILELQPAI----KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR-GQAE 372
I +++P G + + E + ++WTVG ++ + D N R +
Sbjct: 224 SKITKIEPNAVVYADGDQEKKVEGNTIIWTVGVSG--------SDVIADSGFNQRRNRVV 275
Query: 373 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPF 432
L + HP +F +GD SA+ +GRP P TAQ++ Q+ D AG N+ AA+N +PL F
Sbjct: 276 VSNHLNLTDHPEVFIIGDVSAVMTDAGRPYPTTAQISSQEGDHAGKNVAAALNGQPLTDF 335
Query: 433 RFQNLGEMMILGRNDA 448
++ G + LG D
Sbjct: 336 VYKPKGTVASLGSQDG 351
>gi|333373994|ref|ZP_08465887.1| pyridine nucleotide-disulfide oxidoreductase [Desmospora sp. 8437]
gi|332968578|gb|EGK07633.1| pyridine nucleotide-disulfide oxidoreductase [Desmospora sp. 8437]
Length = 402
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 159/412 (38%), Gaps = 102/412 (24%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I +LG G+GGL T + L+ + + ++ +V LV+ + L+E +G +D
Sbjct: 9 PKIVVLGAGYGGLMTTVGLQKEL--NHQEAEVTLVNLNPYHYVTTKLHEPAAGTLDPDYA 66
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSD---HLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
A LL V+F +D V + P + HL P+ +YD+LV
Sbjct: 67 RVEIAGLLKQEKVRFVQDEVTRVDPENKEIHLAGREPL----------------KYDYLV 110
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK----------- 245
LG+ P+ + G E AF L + R R+ E + EEK
Sbjct: 111 FGLGSAPETFGIKGLLENAFFIRNL-NGVRQIREHIEYMFSQYNNSEEKRDELLTIVVGG 169
Query: 246 ----GI-----------------------VQAINVETTICPTGTPGNREAALKVLSARKV 278
GI V+ +NVE PT PG E +K
Sbjct: 170 AGFTGIEFVGELVDRIPELCRQFDIPREKVRLVNVEA--APTVLPGFDEELVK------- 220
Query: 279 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 338
Y ++ + G E + P PN K +K ++
Sbjct: 221 -----YAMQYLEEHG-VEFRISTPIEECTPNGVVLKGGEK----------------IDSA 258
Query: 339 LVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 396
V+WT G + PLL ARG+ + DE L GH F +GDSS + +
Sbjct: 259 TVVWTGGVRGNPLLEEAGIET---------ARGRVKVDEYLRAPGHEDFFVVGDSSLIFN 309
Query: 397 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
GRP P TAQ+A QQ NL A + + PF+F++ G + LGR A
Sbjct: 310 DEGRPFPPTAQMATQQGQHLSSNLVAQLRGGSMKPFKFESKGTLASLGRGSA 361
>gi|258540746|ref|YP_003175245.1| pyridine nucleotide-disulphide oxidoreductase [Lactobacillus
rhamnosus Lc 705]
gi|257152422|emb|CAR91394.1| Pyridine nucleotide-disulphide oxidoreductase [Lactobacillus
rhamnosus Lc 705]
Length = 395
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 163/375 (43%), Gaps = 37/375 (9%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ G+ L L K + +VDQ+ + L+E+ +G V A +I
Sbjct: 4 VVILGAGYAGIRAVKTLSKLA---PKGTTLTVVDQNANHEERTQLHEVAAGTVPATKITF 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L VQF + +V + S L V+LE+ + YD+L+++LG
Sbjct: 61 NIQQVLPKD-VQFIQSKVSKVDVSSKL-------------VILENHAPLRYDYLIIALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
+ + GAAE A P + A + + + EL N+++ ++ + I
Sbjct: 107 RSEDFGLLGAAENALPLDNVTSAETIAKTI-ELRVANYKQSQDPKDLTVIVAGAGFTGVE 165
Query: 262 TPGNREAALKVLSARK----VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 317
G +L L+ + V+++ R + F+ + + + +
Sbjct: 166 LLGELTHSLPALAKKYDTPPVKII--SMEMATRILPMFDEKLANYAMDYLKSHGVTMMTG 223
Query: 318 KYILELQPAI----KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR-GQAE 372
I +++P G + + E + ++WTVG ++ + D N R +
Sbjct: 224 SKITKIEPNAVVYADGDQEKKVEGNTIIWTVGVSG--------SDVIADSGFNQRRNRVV 275
Query: 373 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPF 432
L + HP +F +GD SA+ +GRP P TAQ++ Q+ D AG N+ AA+N +PL F
Sbjct: 276 VSNHLNLTDHPEVFIIGDVSAVMTDAGRPYPTTAQISSQEGDHAGKNVAAALNGQPLTDF 335
Query: 433 RFQNLGEMMILGRND 447
+++ G + LG D
Sbjct: 336 VYKSKGTVASLGSQD 350
>gi|42521954|ref|NP_967334.1| NADH dehydrogenase [Bdellovibrio bacteriovorus HD100]
gi|39574484|emb|CAE77988.1| NADH dehydrogenase [Bdellovibrio bacteriovorus HD100]
Length = 429
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/378 (24%), Positives = 160/378 (42%), Gaps = 35/378 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ I+GGGF GL A L +++ V L+D+ +F+P+LY++ + + EI+
Sbjct: 10 KVVIVGGGFAGLKAARAL-----GNNEDVSVTLIDRRNYHLFQPLLYQVATAGLSPAEIS 64
Query: 141 PRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L+ V F D ++ + T+ + + L EYD+L+L+
Sbjct: 65 GPIRGILSKYKNVSVFLDNLE------------NVDLTNKKIQVQDRSL--EYDYLILAC 110
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFERLEEKGIVQAINVETTIC 258
GA+ P E A TLE A + R+L ER E EK Q V
Sbjct: 111 GAKHSYFAHPEWEENAPGLKTLEQATEIRRRLLMAFERAEKETDPEKQKQQLTFVIVGAG 170
Query: 259 PTGT--PGNREAALKVLSARKVQLVLGYFVRCI------RRVGEFEASVKQPESGAIPNI 310
PTG G + + + + R I R + F + + + + ++
Sbjct: 171 PTGVELAGTIGEISRHTLTKDFRHIDPSRTRVILIEAGPRILAAFHPDLSRKAAADLEDL 230
Query: 311 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQ 370
++ + +++ L ++ +A +LW G +P N+ +PL+ G+
Sbjct: 231 GVQIWTNTRVTDVKSDSVVLGDEVIKAATILWAAGVQP------SSINKTLGVPLDRAGR 284
Query: 371 AETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLL 430
++ L +K HP +F LGD + G+ LP A VA QQ A + I +P L
Sbjct: 285 VIIEKDLSLKEHPEVFVLGDQACYLTDKGQALPGLASVAMQQGTHAANQILREIEGKPRL 344
Query: 431 PFRFQNLGEMMILGRNDA 448
F++ + G+M +GR A
Sbjct: 345 EFKYLDKGQMATIGRRKA 362
>gi|392380621|ref|YP_005029817.1| putative NADH dehydrogenase FAD-containing subunit transmembrane
protein [Azospirillum brasilense Sp245]
gi|356875585|emb|CCC96323.1| putative NADH dehydrogenase FAD-containing subunit transmembrane
protein [Azospirillum brasilense Sp245]
Length = 453
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 164/400 (41%), Gaps = 66/400 (16%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P +P + I+G GFGGL A E+L +V ++D++ +F P+LY++ + +
Sbjct: 10 PVDSRPHVVIVGAGFGGLACA---EAL---GGTNIRVTIIDRNNYHLFVPLLYQVATAAL 63
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHG-----GTVLLESGLI 189
+IA ++ S H ++ M G V L G
Sbjct: 64 SPADIAEPIRRIV-----------------SRHPNIDVVMGEVTGIDRTAKRVELADGSF 106
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEE-KGIV 248
V YD LVL+ G+ AE A T+E+A R+ +L NFE+ E +
Sbjct: 107 VPYDRLVLATGSSYSYFGHDDWAEIAPGLKTIENARRIRARLL----MNFEQAEMCEDPA 162
Query: 249 QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIP 308
+ + TTI G P E A V + L R RR+ A V E+G P
Sbjct: 163 RQKALMTTIVVGGGPTGVEMAGAVAELARFTL-----ARDFRRIDPRTARVLLVEAG--P 215
Query: 309 NIAADKNSD-------------------KYILELQPAIKGLESQIFEADLVLWTVGSKPL 349
I + D + + + P + + A ++W G K
Sbjct: 216 RILSTFPDDLGQYARRKLEELGVVVLTGQAVESITPEGATVGGRFIPAGAIVWGAGVK-- 273
Query: 350 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 409
P + + G+ D + V G P ++ALGD++AL G+PLP AQVA
Sbjct: 274 ----ASPAGSWLGVETDRSGRIPVDADMAVPGVPDVYALGDTAALAGDDGKPLPGLAQVA 329
Query: 410 FQQADFAGWNLWAA-INDRPLLPFRFQNLGEMMILGRNDA 448
QQ + G L A+ + +PL PFRF+N G I+GR+ A
Sbjct: 330 KQQGEHLGGGLEASLLRGQPLEPFRFRNRGNTAIVGRSAA 369
>gi|269125925|ref|YP_003299295.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermomonospora curvata DSM 43183]
gi|268310883|gb|ACY97257.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Thermomonospora curvata DSM 43183]
Length = 452
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 108/429 (25%), Positives = 189/429 (44%), Gaps = 43/429 (10%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQV--LLVDQSERFVFKPMLYELLSGEVDAW 137
P I I+GGG+ G+YTALRLE + ++ ++ +V +VD ++P L E +G +
Sbjct: 11 PHILIVGGGYVGMYTALRLEKKLRRELRRGEVKITVVDPQSYMTYQPFLPEAAAGNLSPR 70
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +L + V RV + ++ + P+A + YD+LV+
Sbjct: 71 HVVTPLRRVLPHCTV--LGARVTEINHAERWAIVQPVAGPPER---------ISYDYLVM 119
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETT 256
+ G+ + +PG AE F T+ +A + + L++L+ R EE ++ +
Sbjct: 120 AAGSVSRTLPIPGLAEHGIGFKTIGEAIHLRNHVLAQLDIAESTRDEE---IRRKALTFV 176
Query: 257 ICPTGTPGNRE-AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAA--- 312
G G A L+ ++ V+ V +R V + PE G P++
Sbjct: 177 FVGGGFAGVEALAELEDMARTAVKYYRNVSVEDMRWVLVEASDRILPEVG--PDMGKWTA 234
Query: 313 ----DKNSD-KYILELQPAIKGL----ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 363
+ D K LQ A+ G+ + F A ++WT G K P R DL
Sbjct: 235 EQLRGRGIDVKMKTFLQSAVDGVVELSDGSRFPAGTLVWTAGVK------AAPVVRHSDL 288
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNLW 421
PL+ RG+ + E L ++G R +A GD++A+ D + GRP AQ A +QA N+
Sbjct: 289 PLDERGRIKATEFLTIEGLVRAYAAGDNAAVPDLTNEGRPCAPNAQHAVRQAKVLADNIV 348
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
++ + L P+ ++G + LG + V G+ L G + ++ R+PT
Sbjct: 349 RSLRGKTLKPYVHDSVGSVAGLGLYKGV---AHVYGIKLKGFPAWFLHRTYHVSRVPTFN 405
Query: 482 HRLKVGVSW 490
+++V W
Sbjct: 406 RKVRVLADW 414
>gi|374602826|ref|ZP_09675814.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus dendritiformis C454]
gi|374391585|gb|EHQ62919.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus dendritiformis C454]
Length = 398
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 167/413 (40%), Gaps = 105/413 (25%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ A RL+ + ++ V LV++ + F L+ +G D+++
Sbjct: 5 PKIVILGAGYGGIMAAQRLQKELNYNE--ADVTLVNKHDYHYFTTHLHMPAAG-TDSYDN 61
Query: 140 A-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
A + L+ + F K VK + D V+LE G + +D+LV+
Sbjct: 62 ARVSISKLIDEFKIDFVKSTVKEIRVQDK-------------KVILEDGTL-SFDYLVIG 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG------------ 246
LG EP+ +PG E+AF ++ ++ RV R+ E + F++ E K
Sbjct: 108 LGGEPETFGIPGLGEYAFSIRSI-NSVRVIREHIEHQFALFKQDESKKERLNFIVGGAGF 166
Query: 247 -------------------------IVQAINVETTICPTGTPGNR----EAALKVLSARK 277
+V N+E PT PG E A+ VL +
Sbjct: 167 TGIEFVGELSDRVPQLCKQFDVDPQLVHIYNIEA--APTALPGFDPELVEYAMDVLKKKG 224
Query: 278 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 337
V L ++ + D +L IK A
Sbjct: 225 VTFKLATAIK-------------------------ECTPDGVVLATGEEIK--------A 251
Query: 338 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD 396
V+WT G + N + A RG+ + DE L GH IF +GD+S + +
Sbjct: 252 STVVWTGGIRG--------NRLIEQAGFEAMRGRVKVDEYLRAPGHDNIFIIGDNSLMIN 303
Query: 397 -SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
++ RP P TAQ+A QQ N+ A+I ++PL F F N G + LG+ +A
Sbjct: 304 PANDRPFPPTAQMAMQQGPVCTSNIVASIRNQPLKKFEFHNKGTVASLGKGEA 356
>gi|108760597|ref|YP_629699.1| NADH dehydrogenase [Myxococcus xanthus DK 1622]
gi|108464477|gb|ABF89662.1| putative NADH dehydrogenase [Myxococcus xanthus DK 1622]
Length = 461
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 160/383 (41%), Gaps = 45/383 (11%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P + ILGGGF GLY A L + P +V +VD+ +F+P+LY++ + + E
Sbjct: 11 PHVVILGGGFAGLYAARHLY-------RAPVRVTMVDRQNHHLFQPLLYQVATATLSPSE 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA +L + V V GV+ T G VLL G + YD+LV++
Sbjct: 64 IAAPLRAVLGHHQVAVVLAEVT--------GVD-----TAGKRVLLSDGEL-NYDYLVIA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL---SELERRNFERLEEKGIVQAINVET 255
GA A+FA ++EDA + R++ EL R + + ++ + +
Sbjct: 110 TGATHSYFGNDAWAQFAPGLKSIEDALAIRRRILVAFELAERETDPEIRRSLLNFVIIGA 169
Query: 256 TICPTG----------TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 305
PTG + + + R +++L + + V + + Q
Sbjct: 170 --GPTGVELAGSLAEISRHSLHGDFRNFDPRDARIILIEGMDKVLPV--YPDDLSQKACR 225
Query: 306 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
+ + + + + + + + A VLW G P + + L
Sbjct: 226 TLEKLGVEVRTGARVTNITEQGVFIGQEFIPARTVLWAAGV------AASPVAKSLGVEL 279
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425
+ G+ L + GH +F +GD S L+D+ G+P+P A VA Q+ A N+ +
Sbjct: 280 DRSGRVLVTPELTIPGHDDVFVVGDLSLLKDAEGKPVPGLAPVAMQEGKHAAHNIRRQLQ 339
Query: 426 DRPLLPFRFQNLGEMMILGRNDA 448
+P++PF + + G ++GR A
Sbjct: 340 GKPMVPFSYWDRGSYAVIGRGHA 362
>gi|383755134|ref|YP_005434037.1| putative NADH dehydrogenase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381367186|dbj|BAL84014.1| putative NADH dehydrogenase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 419
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 108/436 (24%), Positives = 184/436 (42%), Gaps = 62/436 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KPRI I+G GFGG+ +L L +++ + LVD+ +F+P+LY++ + +
Sbjct: 4 RKPRIVIVGAGFGGV----KLAKLFSKEN--VDITLVDRHNYHLFQPLLYQVSTAVLSTD 57
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EIA P N V+FF + LGV+ +LL + +EYD+L+
Sbjct: 58 EIAYPIRTFFRKNKNVEFFMAKA--------LGVDQQR------NILLTNHGEIEYDYLI 103
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVET 255
L+ GA + + +F +L++A + + L ER N + E+ + +
Sbjct: 104 LAAGATTNFFGMTEVEQHSFGMKSLQEALHIRNHVLHMFERANKSKDPEE---RRKMLSF 160
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI--AAD 313
I G G EA + ++G + + E +VK E A PN+
Sbjct: 161 VIVGGGPTGIEEAG-------AISELIGIQKKEFHNLDFSEVTVKLIE--ATPNVLPMMP 211
Query: 314 KNSDKYILE----------LQPAIKGLESQIFE--------ADLVLWTVGSKPLLPHVEP 355
+N + +E L + G + + + ++W G K + P +E
Sbjct: 212 QNLRDHTVEVLRSKGVEVLLNTQVTGYDGHVIKLKNGEEIPTSTLIWAAGVKAV-PFIEN 270
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ + G+ DE L V G +FA+GD + + RPL A VA Q+A
Sbjct: 271 CGGEV-----DRAGRVIVDEKLRVNGSQNVFAIGDCANFCHGTERPLATVAPVATQEAVV 325
Query: 416 AGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
A N+ I + L F +++LG M +GR A V+ + + + G I A +L
Sbjct: 326 AHENIMRLIRGQQELKTFVYKDLGAMATIGRGQAVVAKTSMNP-EMTGFIAWCAWMFIHL 384
Query: 475 IRLPTDEHRLKVGVSW 490
IRL + V + W
Sbjct: 385 IRLAGTHTNITVAIKW 400
>gi|334138535|ref|ZP_08511953.1| pyridine nucleotide-disulfide oxidoreductase [Paenibacillus sp.
HGF7]
gi|333603946|gb|EGL15342.1| pyridine nucleotide-disulfide oxidoreductase [Paenibacillus sp.
HGF7]
Length = 397
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 108/411 (26%), Positives = 163/411 (39%), Gaps = 102/411 (24%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI ILG G+GG+ T+LRL+ L+ ++ V LV++ + L+ +G
Sbjct: 5 PRIVILGAGYGGVVTSLRLQKLLNYNEA--DVTLVNKHDYHYITTHLHMPAAGTDKPDNA 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L+ V F K V + P + V+LE G + YD+LV+ L
Sbjct: 63 RVNISSLIDEFKVDFVKSTVVQIRPGEK-------------KVILEDGTL-SYDFLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV---------------DRK-------------- 230
G EP+ +PG E+A ++ + DRK
Sbjct: 109 GGEPETFGIPGLKEYAMTIRSINSVRHIREHIEYQFARFKQEPDRKELLTFVVGGAGFSG 168
Query: 231 ---LSELERRNFERLEE----KGIVQAINVETTICPTGTPGNR----EAALKVLSARKVQ 279
+ EL R E +E +V N+E PT PG E A+++L+ + V
Sbjct: 169 IEFVGELADRIPELCKEFDVDPALVHIYNIEA--APTALPGFDPELVEYAMRLLTDKGVT 226
Query: 280 LVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 338
+ ++ C PE G + IA D + +A
Sbjct: 227 FKIATAIKEC------------TPE-GVL--IAGD-------------------EFIKAG 252
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS 397
V+WT G + N+ L D RG+ + DE L G+ IF GD S + +
Sbjct: 253 TVIWTGGIRG--------NHLLEDAGFETMRGRIKVDEFLRAPGYDNIFVTGDCSLVMNP 304
Query: 398 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
GRP P TAQ+A QQ + NL A+I L F F N G + LG+ +A
Sbjct: 305 EGRPYPPTAQIATQQGENCALNLVASIRGNALKEFAFVNRGTVASLGKGEA 355
>gi|304408211|ref|ZP_07389860.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus curdlanolyticus YK9]
gi|304342899|gb|EFM08744.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus curdlanolyticus YK9]
Length = 401
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 97/413 (23%), Positives = 164/413 (39%), Gaps = 100/413 (24%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ TALRL+ + ++ V LV++ + L+ +G +
Sbjct: 5 PKIVILGAGYGGVLTALRLQKQLNYNE--ADVTLVNKHDYHYITTHLHMPAAGTDNPENA 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L+ + F K V + P D V+LE G + YD+LV+ L
Sbjct: 63 RVSISKLIDEFKIDFVKSTVVQIRPQDK-------------KVILEDGTL-SYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK-------------- 245
G EP+ +PG E A ++ ++ R+ R+ E + F+R +
Sbjct: 109 GGEPETFGIPGLLENAMNIRSI-NSVRLIREHIEYQFARFKREPHRTDYLTFVVGGAGFT 167
Query: 246 -----------------------GIVQAINVETTICPTGTPGNR----EAALKVLSARKV 278
+V+ NVE P+ PG E A+ VL+ + V
Sbjct: 168 GIEFIGELADRIPELCREFDVDPNMVKIYNVEA--GPSALPGFDPELVEYAMNVLTKKGV 225
Query: 279 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 338
+G ++ + G ++P ++ +
Sbjct: 226 TFKIGTAIKSCSQDGVVVQKGEEP-----------------------------AEEIRSQ 256
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSSALRD 396
V+W+ G + NRL + RG+ + D+ L G ++ +GD+S + +
Sbjct: 257 TVIWSGGVR---------GNRLIEEAGFETMRGRVKIDDNLRAPGSDHVYIVGDNSLMFN 307
Query: 397 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
GRP P TAQ+A QQ NL A+I ++PL F F N G + LG+ +A
Sbjct: 308 EDGRPYPPTAQIAMQQGVVCAHNLVASIRNQPLKKFVFSNKGTVASLGKGEAV 360
>gi|75907165|ref|YP_321461.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anabaena variabilis ATCC 29413]
gi|75700890|gb|ABA20566.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Anabaena variabilis ATCC 29413]
Length = 441
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 161/394 (40%), Gaps = 60/394 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ R+ I+G GFGGL A L + VLL+D+ F P+LY++ +G+++
Sbjct: 2 RNRRVVIVGAGFGGLQAAQSLA------NSGADVLLIDRHNYHTFVPLLYQVATGQIEPE 55
Query: 138 EIAPRFADLLANTGVQFFKDRVK-----LLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
IA +L + + K L+ + + +G + T G + +Y
Sbjct: 56 YIAYPIRTILRRFSFNYRRQHQKPQVQFLMAEVEQIDFSGQIVKTAKGAI--------DY 107
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAIN 252
D+LVL+ G+ + V GA E+AFP +LE+A + + + + + Q +
Sbjct: 108 DFLVLATGSRTQFWGVSGAEEYAFPMRSLEEAVALRNHIFSCFEQAIQESDAAKRRQLLT 167
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR----VGEFEASVKQPESGAIP 308
TI G G A V R C+RR +G E + +SG
Sbjct: 168 F--TIVGGGATGVEMAGALVEMLRG----------CLRRDYPTIGFGEVKIILVQSGDRL 215
Query: 309 NIAADKNSDKYILE----------LQPAIKGL--------ESQIFEADLVLWTVGSKPLL 350
+ K Y + LQ + L ++I + V+WT G + L
Sbjct: 216 LVEFPKKLGNYTYKKLHQLGVEVYLQTRVSQLTQGFVHLENAEIIPSASVIWTAGLEANL 275
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
P V L +LP+ +G+ TL HP ++A+GD + + + +G+ L A A
Sbjct: 276 PGV------LEELPVAHKGKIVVHPTLQALEHPNVYAIGDLAYV-EKNGKSLSGVAPEAL 328
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
QQ N+ I + PF + N G + I+G
Sbjct: 329 QQGVAVARNIQQQIRGKSPKPFNYFNKGRLAIIG 362
>gi|390956728|ref|YP_006420485.1| NADH dehydrogenase, FAD-containing subunit [Terriglobus roseus DSM
18391]
gi|390411646|gb|AFL87150.1| NADH dehydrogenase, FAD-containing subunit [Terriglobus roseus DSM
18391]
Length = 450
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 162/394 (41%), Gaps = 57/394 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ R+ I+GGGF GL A E+L D + V LVD+ F+P+LY++ + +
Sbjct: 10 RKRVLIVGGGFAGLKAA---EALA---DAEVNVTLVDRRNHHTFQPLLYQVALAVLSPAD 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA +L + Q D V G + T L+SG ++EYD+L+L+
Sbjct: 64 IAQPIRAMLRSPNTQVLMDEVT--------GFD-----TAARRATLKSGTVLEYDYLILA 110
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
G+ A T+EDA + R++ +++E G A+N +
Sbjct: 111 TGSTHSYFGKDEWEHLAPGLKTIEDAVEIRRRVLLAFELAEGQMQETGRHPALNF---VV 167
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV-----------------GEFEASVKQ 301
G P E A + K+ Y R + + G + ++Q
Sbjct: 168 IGGGPTGVELAGAISDIAKL-----YIRRDFKHIDPATARVLIVEGSPTILGAYPEDLQQ 222
Query: 302 PESGAIPNIAADKNSDKYILELQPA---IKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
+ + ++ + ++QP + G E ++ + LW G + P
Sbjct: 223 SALKQLAELDVQVRTNTRVTDVQPGYVVVDGHER--IDSVVTLWAAGVQ------ASPLG 274
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
+L + ++ RG DE L GHP IF GD + S G+P+P AQ A Q D+AG
Sbjct: 275 KLLGVEVDKRGAVLVDEQLHPVGHPEIFVCGDLAHAM-SEGKPVPGVAQPAMQMGDYAGK 333
Query: 419 NLWAAINDRPL-LPFRFQNLGEMMILGRNDAAVS 451
+ + + PF + + G+M +GR+ A +
Sbjct: 334 TIALEVKGEKMKKPFHYHDKGDMATIGRSAAVAN 367
>gi|410457406|ref|ZP_11311218.1| NADH dehydrogenase [Bacillus bataviensis LMG 21833]
gi|409925237|gb|EKN62457.1| NADH dehydrogenase [Bacillus bataviensis LMG 21833]
Length = 405
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 108/402 (26%), Positives = 172/402 (42%), Gaps = 73/402 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP+I ILG G+GGL T +RL+ L+ ++ ++LV++++ L+E +G +
Sbjct: 2 RKPKIVILGAGYGGLLTTVRLQKLIGVNE--ADIVLVNKNDYHYETTWLHEASAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
++ ++++ + V F +D V + + V+LE G V YD+LV+
Sbjct: 60 KVRYDVSNVIDRSKVDFVQDTVVEINKDEK-------------KVILEKGE-VNYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG-----IVQAIN 252
+LG EP+ + G E+AF + + ++ R R+ E + + EK IV
Sbjct: 106 ALGGEPETFGIKGLKEYAFGITNV-NSSRQLREHIEYQFATYNMEAEKNDNRLSIVVGGA 164
Query: 253 VETTICPTGTPGNR--------------------EAALKVLSARKVQLVLGYFVRCIRRV 292
T I G NR EAA VL +LV Y V + R
Sbjct: 165 GFTGIEFLGELTNRIPELCHEYDVDFQKVKITCVEAAPTVLPGFDPELV-NYAVSTLERK 223
Query: 293 G-EF--EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 349
G EF ++K+ GAI D+ E +A+ V+W G +
Sbjct: 224 GVEFLIGTAIKEATPGAILVGKGDE----------------EPYEIKAETVVWAAGVRG- 266
Query: 350 LPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQ 407
N + A RG+ + + L G +F +GDSS + + RP P TAQ
Sbjct: 267 -------NAIIEKSGFEAMRGRVKVNPDLRAPGFDNVFIIGDSSLVINEEINRPYPPTAQ 319
Query: 408 VAFQQADFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDA 448
+A QQ + N+ A I N L F F N G + LG +DA
Sbjct: 320 IAMQQGELVARNIGALIRNKTDLETFSFDNKGTVCSLGEDDA 361
>gi|148252312|ref|YP_001236897.1| NADH dehydrogenase FAD-containing subunit [Bradyrhizobium sp.
BTAi1]
gi|146404485|gb|ABQ32991.1| Putative NADH dehydrogenase FAD-containing subunit transmembrane
protein [Bradyrhizobium sp. BTAi1]
Length = 424
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 122/446 (27%), Positives = 186/446 (41%), Gaps = 50/446 (11%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+G GFGGL T RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 11 VVIVGAGFGGLETTYRLAG------APVRITLIDRRNHHLFQPLLYQVATASLATSEIAW 64
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
L+ N + V L S V G A G VLLE V YD LVL+ GA
Sbjct: 65 PIRSLVRN------RPEVTTLFAS----VKGIDAA--GRRVLLEDDTDVAYDTLVLATGA 112
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTICPT 260
FA TLEDA + R+ L ER ER + V PT
Sbjct: 113 RHAYFGHDEWEPFAPGLKTLEDATTLRRRILVAFERAERERDPARRAAWMTFVIIGAGPT 172
Query: 261 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD--K 318
G L+ +L R + EA V E+G P + D
Sbjct: 173 GVE---------LAGTIAELARSTLPPDFRSIDTHEARVVLIEAG--PRVLGGFPEDLSA 221
Query: 319 YILELQPAIKGLESQIFEA------DLVLW---TVGSKPLLPHVEPPNNRLHDL---PLN 366
Y L I G+E + +A D V++ + ++ L+ +R + P +
Sbjct: 222 YTLTSLERI-GVEVVLGQAVTECTADSVVYGGKRLDTRTLIWAAGVRASRAAEWLGAPAD 280
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
G+ + L V GHP IFA+GD+ + +G+P+P A A QQ + + A +
Sbjct: 281 RAGRLQVAPDLTVPGHPEIFAIGDTVTIAAWNGQPVPGIAPAAKQQGRYVAEAIKARLAG 340
Query: 427 RPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 486
R L PFR+ + G + +G+ A + +++ L G + LA++ L +RL V
Sbjct: 341 RTLRPFRYHHAGSLAQIGKRLAVIDFGWIK---LRGALAWWIWGLAHIYFLIGLRNRLSV 397
Query: 487 GVSWLTKSAIDSVA--LLQSTLTKVL 510
+SWL A D A L+ +KV+
Sbjct: 398 ALSWLWIHARDQRAARLITQGSSKVM 423
>gi|398826678|ref|ZP_10584915.1| NADH dehydrogenase, FAD-containing subunit [Bradyrhizobium sp.
YR681]
gi|398220623|gb|EJN07066.1| NADH dehydrogenase, FAD-containing subunit [Bradyrhizobium sp.
YR681]
Length = 421
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 106/431 (24%), Positives = 173/431 (40%), Gaps = 40/431 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL T RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 7 RVVIVGAGFGGLETTYRLAG------APVEITLIDRRNHHLFQPLLYQVATASLATSEIA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L+ + + V L + V+G A VL++ G V YD LVL+ G
Sbjct: 61 WPVRHLMRD------RREVTTLFAT----VSGVDATRR--RVLIDDGSEVPYDTLVLATG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTICP 259
A +FA TLEDA + R L ER E K + V P
Sbjct: 109 ARHAYFGHDEWEQFAPGLKTLEDATTLRRHILVAFERAERETDPVKRAARLTFVIVGAGP 168
Query: 260 TGTP----------GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN 309
TG A + + K ++VL R + F + ++
Sbjct: 169 TGVELAGTIAEMAHHTLPADFRNIDTHKARVVL--IEAGPRVLAGFPDDLSAYAQASLEK 226
Query: 310 IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
I + + + E+ ++ EA +W G + P P + G
Sbjct: 227 IGVEVVLGQAVTEINREGVVFGGKLLEAKTRIWAAGVRA------SPAAEWLGTPSDRAG 280
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
+ + ++ L + HP IFA+GD+ ++ G+P+P A A QQ + A +
Sbjct: 281 RVQVEDDLTIADHPEIFAIGDTISINAWDGKPVPGIAPAAKQQGRHVAETIKARLRGESK 340
Query: 430 LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVS 489
PFR+++ G + +G+ A + ++ L G I +A++ L HRL V +S
Sbjct: 341 GPFRYKHSGSLAQIGKRLAVIDFGKIK---LRGTIAWWIWGIAHIYFLIGLRHRLSVALS 397
Query: 490 WLTKSAIDSVA 500
WL A D A
Sbjct: 398 WLWIYARDQRA 408
>gi|377575419|ref|ZP_09804413.1| putative NADH dehydrogenase [Mobilicoccus pelagius NBRC 104925]
gi|377535996|dbj|GAB49578.1| putative NADH dehydrogenase [Mobilicoccus pelagius NBRC 104925]
Length = 431
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 166/396 (41%), Gaps = 49/396 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GF G + L ++ V LVD+ F+P+LY++ +G ++ +IA
Sbjct: 4 RVVIVGAGFAGQHAYHELAEAGYE------VTLVDRHPYTTFQPLLYQVATGGLNPGDIA 57
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
++ + K R K + V G T VL G + YD LVL+ G
Sbjct: 58 FPLRRFVSRS-----KGRTKFRRAT----VTG--IDTENKRVLTNRGEPIPYDTLVLAQG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELER--------RNFERLEEKGIVQAI 251
A P +PGA E A + +A V D S LE+ R F L G +
Sbjct: 107 AGPNFFGIPGAKENARTIYSRAEALAVRDLLFSGLEQMTTQPDRERRFTVLVVGGGATGV 166
Query: 252 NVETTICPTGTPGNREAALKV----LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI 307
+ T+ + A+ V LS ++VL + V F+ +++ +
Sbjct: 167 EMAGTLAEM-----KSEAIPVVYPELSQDSFRVVLAEMADTL--VAPFDPRLQRYTLHQL 219
Query: 308 PNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 366
D + E++P ++ + + DLV+W G H P +P
Sbjct: 220 RKRGVDIRLGTAVKEVRPDSVDFADGSTMDVDLVIWASG---FGAH---PEVSEWGMPQG 273
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
G+ E + L VKGHP I+A+GD++ G PLP AQ A Q G + AA
Sbjct: 274 RGGRIEVEPNLQVKGHPDIYAIGDAAI---EPGSPLPQLAQPAMQMGSHVGREIVAADKG 330
Query: 427 RPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 462
P PF + + G M +GRN AAV+ F G T+ G
Sbjct: 331 LPPTPFGYDDKGTMATIGRN-AAVA-QFPSGRTVTG 364
>gi|452973192|gb|EME73014.1| NADH dehydrogenase YumB [Bacillus sonorensis L12]
Length = 403
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 163/390 (41%), Gaps = 53/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP++ +LG G+GGL T RL + ++ + LV++ ++E +G +
Sbjct: 3 KPKVVVLGAGYGGLMTVTRLGKKIGVNE--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + ++ V+LE+G + YD+LV++
Sbjct: 61 CRYQIKDVINQSRVRFVQDTVKKINKEEN-------------KVVLETGEL-SYDYLVVA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF--------ERLEEKGIVQA 250
LGA P+ + G E AFP S + + R+L E F +R E IV
Sbjct: 107 LGAVPETFGISGLKEHAFPISNINTS----RQLREHIEYQFATYNTEAEKRPERLTIVVG 162
Query: 251 INVETTICPTGTPGNREAAL---KVLSARKVQLVLGYFVRCIRRVGE----FEASVKQPE 303
T I G GNR L + KV L+ C+ F+ +
Sbjct: 163 GAGFTGIEFLGELGNRIPELCREYDIDREKVNLI------CVEAAPSVLPGFDPELVDYA 216
Query: 304 SGAIPNIAADKNSDKYILELQP--AIKGLESQIFE--ADLVLWTVGSKPLLPHVEPPNNR 359
+ + E P I G + Q E A V+W G + P +E
Sbjct: 217 VNYLEGKGVQFKIGTAVKECTPDGIIVGKDDQTEEIKAGTVVWAAGVRGN-PVIEESGFE 275
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQADFAGW 418
N RG+ + L V+GH IF +GD S + + + RP P TAQ++ QQ +
Sbjct: 276 ------NMRGRVKVKPDLRVEGHDNIFVIGDCSLVINEETDRPYPPTAQISMQQGETCAK 329
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
N+ A I+ + F F N G + LG +DA
Sbjct: 330 NIAALIHGKETETFTFDNKGSVASLGEHDA 359
>gi|193213153|ref|YP_001999106.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chlorobaculum parvum NCIB 8327]
gi|193086630|gb|ACF11906.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chlorobaculum parvum NCIB 8327]
Length = 430
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 174/424 (41%), Gaps = 42/424 (9%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K ++ I+GGGF GL A L + K +V L+D+ +F+P+LY++ + +
Sbjct: 2 KKKVVIVGGGFTGLNAARML-----SNSKDVEVTLIDRKNYHLFQPLLYQVAMAALGEGD 56
Query: 139 IAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++LA + + FK V ++ + T G + EYD+LVL
Sbjct: 57 IATPLRNMLAGHDNITVFKGMVT------NVDLEQRKVITDFGDL--------EYDYLVL 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL----ERRN--FERLEEKGIVQAI 251
+ GA+ E A L A + R++ E ER ER ++ V
Sbjct: 103 ACGAQHHYFGKNDWEEHAPGLKNLAQASEIRRRVMEAYEAAERTKDPKERKKQLTFVIVG 162
Query: 252 NVETTICPTGTPG--NREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIP 308
T + G+ G +R K +L + V R+ G F + + +
Sbjct: 163 GGPTGVELAGSIGEMSRYTLSKFYRNIDPKLTRIFIVEAAERILGTFSHELSSKATRELE 222
Query: 309 NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP--LLPHVEPPNNRLHDLPLN 366
+ + + ++ + + EA VLW G K + P++ +R
Sbjct: 223 KLGVQVWTSSMVSDVDADGVQIGRERIEAATVLWAAGVKASEIGPNMGVETDR------- 275
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
G+ + + L + GHP +F GD + G LP A VA QQ + G + +
Sbjct: 276 -SGRIKIENDLSLPGHPEVFVGGDQACFTLEDGSTLPGMAPVAMQQGNAIGRMIRDDLKG 334
Query: 427 RPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 486
+P PF++++ G+M +GRN A V + + DG + L ++ L T HR+ V
Sbjct: 335 KPRKPFKYRDKGQMATIGRNKAIVE---IGNLKFDGALAWFTWLLVHIYYLSTFRHRVFV 391
Query: 487 GVSW 490
+ W
Sbjct: 392 LMQW 395
>gi|409356695|ref|ZP_11235082.1| NADH dehydrogenase, FAD-containing subunit [Dietzia alimentaria 72]
Length = 457
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 110/432 (25%), Positives = 180/432 (41%), Gaps = 58/432 (13%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+G GF GLY A +L VLL+DQ+ F+P+LY+ + ++ +A
Sbjct: 22 VVIVGAGFAGLYAAQKLGR------AGVDVLLLDQNPYHQFQPLLYQAATSQIPISSVAR 75
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L +D VK+ V A T TV GL L ++ G
Sbjct: 76 PLRAILHRE-----RDHVKIRTAR----VADIDATTK--TVTTADGLSYRGRILAIAAGT 124
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETT-ICP 259
EP PGA + A+P +L+DA + L LER + + + G + V P
Sbjct: 125 EPNFFNTPGARDLAYPLYSLDDATSLSSAMLGALERASAMQ-DAGGEHRPFGVAVVGAGP 183
Query: 260 TG--TPGNREAALKVLSARKV--QLVLGYFVRCIRR----VGEFEASVKQPESGAIPNIA 311
TG T G ++++ A + + V I +G F S ++ ++ ++
Sbjct: 184 TGVETAGALAENIRLVVAEQYSPEFAASINVHLIDMSDTVLGAFSDSSQRYTRRSLQDLG 243
Query: 312 ADKNSDKYILELQPAIKGL--------ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD- 362
I+ L A+ + + A +V WT G K LH
Sbjct: 244 V-------IIHLGTAVSAVTEEGVTLADDTTIPAGIVAWTAGLKA--------TGLLHKA 288
Query: 363 -LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 421
LP G+ + + L V P ++ LGD++ + D+ GR LP VA Q +A N+
Sbjct: 289 GLPTGRGGRVDVNTDLTVPDFPGVYVLGDAANIVDAKGRSLPQLGSVAKQSGQWAADNIQ 348
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAA--VSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
A + +P PF F++LG M ++GR A V+P ++ + G + + +L+ L
Sbjct: 349 ADLAGQPRTPFGFRDLGFMAMIGRGRAVAEVTPRRIQ---MSGLLAFLSWLAVHLMLLSG 405
Query: 480 DEHRLKVGVSWL 491
+ R V VSW
Sbjct: 406 MQQRAAVLVSWF 417
>gi|408371469|ref|ZP_11169234.1| NADH dehydrogenase [Galbibacter sp. ck-I2-15]
gi|407743059|gb|EKF54641.1| NADH dehydrogenase [Galbibacter sp. ck-I2-15]
Length = 435
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 116/441 (26%), Positives = 186/441 (42%), Gaps = 67/441 (15%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ K + I+GGGF G+ A L+ + +V ++D++ +F+P+LY++ +G +
Sbjct: 2 NNKPKKTVIIGGGFAGITAANNLK------NSNTEVTIIDKANHHLFQPLLYQVATGALS 55
Query: 136 AWEIA-PRFADLLANTGVQFFKDRVKLLCP-SDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+IA P A L N+ ++ VK + P HL L +G + +D
Sbjct: 56 PGDIAAPIRAILGKNSKIRVVLGEVKKIHPRKKHLS--------------LVNGRKIPFD 101
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAIN 252
LVL+ GA+ E A T+ DA +V +R L LE E+L++ Q
Sbjct: 102 QLVLAPGAQYNYFGNEEWQEHAPGLKTISDALKVRERILQSLEEA--EQLQDPQQRQM-- 157
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIA- 311
T + G P E A + K + G+ + V E E + E A PNI
Sbjct: 158 HLTYVIIGGGPTGVEMAGAIAEIAKRTMRNGF-----KNVKEEEIRIFLVE--AAPNILN 210
Query: 312 ------ADKNSDKY------ILELQPAIK------GLESQIFEADLVLWTVGSK--PLLP 351
DK D +L P +K L+ + ++W G K PLL
Sbjct: 211 GFPEPLGDKGKDMLEELGVKVLRGTPVVKIERDTVHLKVGSIHSSNIIWAAGIKASPLLD 270
Query: 352 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 411
++ +RL G+ + L + G+P IF LGD++ +D SG+PLPA A VA Q
Sbjct: 271 SLQVEQDRL--------GRVFVNGDLSIPGYPDIFVLGDAAHFKDPSGKPLPALASVARQ 322
Query: 412 QADFAGWNLWAAINDRPLLP-FRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
Q + G L L P FR+ + G M +G A + + G+ G
Sbjct: 323 QGIYLGKQLARKEKGNYLPPHFRYIDKGTMATIGTAKAVAN---IRGLKFSGFFAWVLWS 379
Query: 471 LAYLIRLPTDEHRLKVGVSWL 491
+++ L +R+ V V W+
Sbjct: 380 TIHILLLIGFRNRINVFVEWV 400
>gi|189499609|ref|YP_001959079.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chlorobium phaeobacteroides BS1]
gi|189495050|gb|ACE03598.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chlorobium phaeobacteroides BS1]
Length = 428
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/434 (22%), Positives = 176/434 (40%), Gaps = 66/434 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+GGGF G+ A L + + ++ L+D+ +F+P+LY++ + A +IA
Sbjct: 3 HVMIVGGGFAGINAAKEL-----GNRRDIRITLIDRKNYHLFQPLLYQVAMSALGAGDIA 57
Query: 141 PRFADLLAN-TGVQFFK------DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
++LA + FK D+ + + +D G M+ YD
Sbjct: 58 EPLRNMLAKYKNITVFKGVVENVDKSRKIIQTDF----GEMS----------------YD 97
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL---SELERRNFERLEEKGIVQA 250
+L+L+ G + E A T+ A + R++ E R + +E K ++
Sbjct: 98 YLILACGVKHHYFGHEEWEENAPGLKTIAQATEIRRRVMEAYEAAERTSDPVERKKLL-- 155
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI--------------RRVGEFE 296
T + G P E A + + L F + I R +G F
Sbjct: 156 ----TFVIVGGGPTGVELAGSI--GEMSRFTLSKFYKHIDPKLTRIFIVEAAPRILGSFS 209
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
+ + A+ + ++ + + + ++ EA VLW G + +
Sbjct: 210 PELSSKATRALEQLGVQVWTNSMVTNVDENGVQIGNERIEASTVLWAAGVRAI------G 263
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
R ++ ++ G+ +E L + G+P IF GD + +G PLP A VA QQ
Sbjct: 264 LGRKMEVDIDRSGRIIVEEDLSIPGYPEIFVGGDQAHFAHHTGNPLPGMAPVALQQGQSI 323
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
G N+ + + PF +++ G+M +GRN A V + + L G + L ++
Sbjct: 324 GKNILNEVKGKQRKPFLYRDKGQMATIGRNKAIVE---MGNMKLFGSVAWFTWLLVHIYY 380
Query: 477 LPTDEHRLKVGVSW 490
L T +HR+ V + W
Sbjct: 381 LATFKHRVFVLMQW 394
>gi|82703122|ref|YP_412688.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Nitrosospira multiformis ATCC 25196]
gi|82411187|gb|ABB75296.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Nitrosospira multiformis ATCC 25196]
Length = 462
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 115/441 (26%), Positives = 174/441 (39%), Gaps = 71/441 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I I+GGGF GL L ++ V LVD + +F P+LY+ +G +D
Sbjct: 37 KTKIAIIGGGFAGLNLVKHLAG-----KEEFDVTLVDMNNYHLFPPLLYQAATGFLDVSN 91
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA F +FF D+V + L P G VLL +G + YD LVL+
Sbjct: 92 IAYPFR--------KFFHDKVNVHFRLGKLQKVMP----EGNKVLLSTGELA-YDCLVLA 138
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF--ERLEEKGI----VQAIN 252
G EP + A P T +DA +E RN+ +++EE I ++
Sbjct: 139 TGTEPNYFGIENIRRAALPMKTADDA---------IEIRNYMLQKMEEVTIEVDEMRRKK 189
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAA 312
+ + + G P E A + RK L Y + + + +S + A
Sbjct: 190 LFSVVIAGGGPTGVEIAGMLAEMRKRILHRDY-----PELTGLQPRIHLVDSASALLGAM 244
Query: 313 DKNSDKYILE----------LQPAIKGL--------ESQIFEADLVLWTVGSKPLLPHVE 354
+S KY E L +K + + E ++LWT G +
Sbjct: 245 SVHSQKYTYEVLLKMGVEIHLNTQVKDYINDTVIFSDGKTLETQILLWTAGVTGKI---- 300
Query: 355 PPNNRLHDLPLNARGQAE---TDETLCVKGHPRIFALGDSSALRDSSGRP--LPATAQVA 409
LP G+ +E V G I+A+GD+ L P P AQVA
Sbjct: 301 -----FEGLPHECYGRGNRLLVNEYNKVSGTRDIYAIGDTCLLTSDRNFPQGHPQLAQVA 355
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
QQ NL A I ++PL PF + + G + I+GRN AV+ + L+G +
Sbjct: 356 LQQGRNLAANLVAVIRNQPLTPFAYNDKGSLAIIGRNK-AVADFPKPALHLEGFMAWGIW 414
Query: 470 KLAYLIRLPTDEHRLKVGVSW 490
+L L T +R +W
Sbjct: 415 LFVHLFSLVTYRNRFMTLANW 435
>gi|325106392|ref|YP_004276046.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pedobacter saltans DSM 12145]
gi|324975240|gb|ADY54224.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pedobacter saltans DSM 12145]
Length = 426
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 109/443 (24%), Positives = 175/443 (39%), Gaps = 80/443 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I I+GGGF G+ +L D + LVD++ F P++Y++ +G ++ I+
Sbjct: 7 KIIIVGGGFAGINLVRKLAKSNLFD-----ITLVDKNNYNFFPPLIYQVATGFLENSNIS 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F L + V+F V + P D T++L++G + YD+LV + G
Sbjct: 62 YPFRKLFRDKNVRFRMGAVLRVIPEDK-------------TLILDTGKL-SYDYLVFATG 107
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQ----AINVETT 256
E + A P TL+DA + L ERLE+ I + + T
Sbjct: 108 TETNYFGLENVKNNAIPMKTLDDALLMRNIL-------LERLEKATIAEDQEEKTRLMTV 160
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR-----VG-EFEASVKQPESGAIPNI 310
+ G P E + + RK +RR VG FE + + +
Sbjct: 161 VIAGGGPTGVEISGMLAELRK---------STVRREYPELVGTRFELYLVNGGGELLSPM 211
Query: 311 AADKNSDKYILE----------LQPAIKGL-ESQIF-------EADLVLWTVGSKPLLPH 352
+ S Y LE L + +S+++ EA+ ++W G K +
Sbjct: 212 SVK--SQTYTLESLEKLGVNILLNTRVTDFKDSKVYLGNGDTIEAETLIWASGVKAI--- 266
Query: 353 VEPPNNRLHDLPLNARGQAE---TDETLCVKGHPRIFALGDSSALRDSSGRP--LPATAQ 407
LP N G D V+G I+ALGD+ + + P P AQ
Sbjct: 267 ------SFEGLPANIYGSGNRMIVDSFNKVRGMEDIYALGDTCVVTEDPEYPGGHPQLAQ 320
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 467
VA QQ N + PLLPF++ + G M I+G+N A F + + G I
Sbjct: 321 VAIQQGKNLAANFMRILKQEPLLPFKYDDKGSMAIIGKNKAVADIPF-KNIHFQGFIAWL 379
Query: 468 ARKLAYLIRLPTDEHRLKVGVSW 490
A +L+ L +R+K +W
Sbjct: 380 AWLFIHLMSLLNYRNRMKTLYNW 402
>gi|310643800|ref|YP_003948558.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus polymyxa SC2]
gi|309248750|gb|ADO58317.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus polymyxa SC2]
gi|392304532|emb|CCI70895.1| pyridine nucleotide-disulfide oxidoreductase [Paenibacillus
polymyxa M1]
Length = 396
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 162/412 (39%), Gaps = 103/412 (25%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I I+G G+GG+ TA +L+ + ++ V L+++ + L+ +G
Sbjct: 5 PKIVIVGAGYGGILTAQQLQKELKHNE--ATVTLINRHDYHYITTHLHMPAAGTDTIEHS 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A L+ V K VK + P++ ++LE G + YD+LV+ L
Sbjct: 63 RIPIAQLIDEFKVDLVKGTVKEIIPTEK-------------KIVLEDGSL-SYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE-----------RRNF--------- 239
G EP+ +PG +FA ++ ++ R+ R+ E + R NF
Sbjct: 109 GGEPETFGIPGMDQFALTIRSI-NSVRLIREHIEYQLALYKNDGKPGRLNFVVGGAGFSG 167
Query: 240 --------ERLEEKGI--------VQAINVETTICPTGTPGNR----EAALKVLSARKVQ 279
+RL + +Q INVE PT PG E A+ VL + V
Sbjct: 168 IEFVAELADRLPQLAKAYDIDFNRIQIINVEA--APTALPGFDPELVEYAMDVLKRKGVN 225
Query: 280 LVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 338
+G ++ C LQ + E + EA
Sbjct: 226 FRIGVPIKEC----------------------------------LQDGVIVGEGEKIEAC 251
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS 397
V+WT G + N + RG+ + D+ L GH IF +GDSS + +
Sbjct: 252 TVVWTGGIRG--------NGLIEKAGFEVVRGRVKVDDFLRAPGHDDIFIIGDSSLMFNP 303
Query: 398 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
GRP P TAQ+A QQ NL A + + L F F N G + LG+ +A
Sbjct: 304 EGRPYPPTAQIAMQQGVLCAKNLAATLRKKELHKFVFSNKGTVASLGKGEAV 355
>gi|359150348|ref|ZP_09183186.1| NADH dehydrogenase, FAD-containing subunit [Streptomyces sp. S4]
Length = 428
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 155/389 (39%), Gaps = 61/389 (15%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA- 140
+ ++GGGF G+ A +L + LLVD F+P+LY+L + ++ E+A
Sbjct: 7 VIVVGGGFAGIEAATKLGR------AGVRTLLVDVHGYHQFQPLLYQLATAQIGVSELAR 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD-WLVLSL 199
P + V+ RV + P T+ L G + E D L+++
Sbjct: 61 PLRSIFRRQPSVRVLTARVAAVDPGRR-------------TITLTDGTVYEADDALIVAC 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI------NV 253
GAE PGA E A+P + DA R+ KL L + + E+K + A+ V
Sbjct: 108 GAEANFFDTPGARENAYPLYSATDATRLGSKLVALLDQADKDTEQKSMNVAVVGAGPTGV 167
Query: 254 ETT---------ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE---FEASVKQ 301
ET + P G+ V V LG F + + E V+
Sbjct: 168 ETAGAIADAINYVVPKLFAGDLAKRCSVALVDMVDRTLGGFSKKSQAYAASRLVERGVRL 227
Query: 302 PESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNR 359
A+ + D + + +ADLV+W G K PLL R
Sbjct: 228 KLGSAVTEVRED------------GLSFADGATMDADLVIWAGGLKAGPLL--------R 267
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
+P G+ + + L V G+ ++ LGD++ + D LP VA Q +A N
Sbjct: 268 ESGMPQGRGGRIDVAKDLTVPGYEGVYVLGDAANITDDRDERLPQLGSVAKQSGGWAARN 327
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ A RP PF +++ G M ++GR A
Sbjct: 328 ILAQRAGRPTEPFGYKDRGYMAMIGRGSA 356
>gi|261409227|ref|YP_003245468.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus sp. Y412MC10]
gi|329926911|ref|ZP_08281314.1| pyridine nucleotide-disulfide oxidoreductase [Paenibacillus sp.
HGF5]
gi|261285690|gb|ACX67661.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Paenibacillus sp. Y412MC10]
gi|328938898|gb|EGG35271.1| pyridine nucleotide-disulfide oxidoreductase [Paenibacillus sp.
HGF5]
Length = 397
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 107/414 (25%), Positives = 166/414 (40%), Gaps = 108/414 (26%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ TA RL+ + ++ V LV++ + L+ +G
Sbjct: 5 PKIVILGAGYGGILTAQRLQKELNYNE--ADVTLVNRHDYHYITTHLHMPAAG------- 55
Query: 140 APRFADLLANTGVQFFK--DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
D + NT V K D K+ D + + H V+LE G + YD+LV+
Sbjct: 56 ----TDSIENTRVSISKLIDEFKI----DLVKSSVQEIRLHDKKVILEDGTL-SYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-------LSELERRNFERLE------- 243
LG EP+ +PG AE A ++ ++ R+ R+ L + ERR ER+
Sbjct: 107 GLGGEPETFGIPGLAEHAMTIRSI-NSVRLIREHIEYQFALYKNERRPQERINFVVGGAG 165
Query: 244 -----------------------EKGIVQAINVETTICPTGTPGNR----EAALKVLSAR 276
+ +V NVE P+ PG E A+ VL +
Sbjct: 166 FSGIEFVAELADRIPRLCKEYDVDPTLVNIYNVEA--APSALPGFAPELVEYAMNVLEKK 223
Query: 277 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 336
V +G ++K+ +P N ++
Sbjct: 224 GVTFKMG-------------IAIKE----CLPGGVVLNNGEE----------------IR 250
Query: 337 ADLVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSSAL 394
A V+WT G + NRL + RG+ + DE L G+ I+ +GD+S +
Sbjct: 251 AATVVWTGGIR---------GNRLVESAGFETMRGRVKVDEYLRAPGYENIYIIGDNSLI 301
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ GRP P TAQ+A QQ N+ AAI D+ + F F N G + LGR +
Sbjct: 302 FNEEGRPYPPTAQMAMQQGVCCAQNIVAAIRDKSMRKFEFHNKGTVASLGRGEG 355
>gi|407465783|ref|YP_006776665.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Candidatus Nitrosopumilus sp. AR2]
gi|407048971|gb|AFS83723.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Candidatus Nitrosopumilus sp. AR2]
Length = 452
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 108/441 (24%), Positives = 197/441 (44%), Gaps = 52/441 (11%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ K +I ILGGGF G+ A +LES + ++ + +++++ + +F PML ++ SG ++
Sbjct: 3 RNKKKIVILGGGFAGVECARQLES-EFGNNPEIELVMISEDNFLLFTPMLPQVASGMIET 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
I + T +F++ R+K + P L T GT S + + YD+LV
Sbjct: 62 RHIVLPIRTVCKKT--KFYEGRIKNIDPYGKL-------VTIWGTGDKRS-ISIHYDFLV 111
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFER--LEEKGIVQAINV 253
++LG+E + + A+ TL DA + +R + LE+ E + K + + V
Sbjct: 112 IALGSETNFFGMADVEKNAYTMKTLNDAVMLRNRVIDMLEQAENETNPILRKSFLNFVVV 171
Query: 254 ETTICPTGTPGN---------------REAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
T G + LKV+ + ++L F +++ +F A
Sbjct: 172 GGGFAGIETAGELMDLLLDARKHYPTIHKEDLKVIVLEALGMILPGFN---QKLADF-AR 227
Query: 299 VKQPESG-------AIPNIAADKNSDKYILE-LQPAIKGLESQIFEADLVLWTVGSKPLL 350
K E G A+ + ++ + K + E L+ +I E ++WT G
Sbjct: 228 DKMIERGIDIRLKTAVTSFDGNEVTTKSLDENLKDSIDTSEIDSIVTKTLIWTAG----- 282
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVA 409
V P N + +G+ ++ L V P +FA+GD + D + RPLP TAQ+A
Sbjct: 283 --VTPVNTIKRSMFKTEKGKVIVNDYLEVLEFPGVFAIGDCALHLDPKTQRPLPPTAQIA 340
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
QA A NL + I + F + + G+M I+G+ +F+ G+ + G
Sbjct: 341 EAQAKIAAKNLISLIRNSKKEKFVYHSKGQMAIIGKRSGI--ATFL-GMNISGFWAWLIW 397
Query: 470 KLAYLIRLPTDEHRLKVGVSW 490
+ YL ++ T + +++V + W
Sbjct: 398 RNVYLSKITTFDKKIRVFLDW 418
>gi|386874786|ref|ZP_10117012.1| pyridine nucleotide-disulfide oxidoreductase [Candidatus
Nitrosopumilus salaria BD31]
gi|386807409|gb|EIJ66802.1| pyridine nucleotide-disulfide oxidoreductase [Candidatus
Nitrosopumilus salaria BD31]
Length = 451
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 112/443 (25%), Positives = 192/443 (43%), Gaps = 58/443 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KK +I ILGGGF G+ A +LES ++D+ + ++L+V + +F PML ++ SG ++
Sbjct: 3 KKKKIVILGGGFAGVECARQLESQ-FKDNPEIELLMVSEDNFLLFTPMLPQVASGMIETR 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I + T +F++ RVK + P L T GT S + + YD+LV+
Sbjct: 62 HIVLPIRTICKKT--KFYEGRVKNIDPYGKL-------VTLWGTGDKRS-ISIHYDFLVV 111
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFER--LEEKGIVQAINVE 254
+LG+E + + A+ TL DA + +R + LE+ E + K + + V
Sbjct: 112 ALGSETNFFGMSDVEKNAYTMKTLNDAVVLRNRVIDMLEQAENETDPILRKSFLNFVVVG 171
Query: 255 TTICPTGTPGN---------------REAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
T G ++ L+V+ + ++L F +++ +F A
Sbjct: 172 GGFAGIETAGELMDLLLDARKHYPTIQKKDLRVIVLEALGMILPGFN---QKLADF-AKD 227
Query: 300 KQPESG-------AIPNIAADKNSDKYILELQPAIKGLESQIF----EADLVLWTVGSKP 348
K E G A+ + ++ + K I P K F ++WT G
Sbjct: 228 KMVERGIDIRLKTAVTSFDGNEVTTKTI---DPTPKDPIDDSFVDSIRTKTLIWTAG--- 281
Query: 349 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQ 407
V P N + +G+ ++ L V P +FA+GD + D + RP P TAQ
Sbjct: 282 ----VTPVNTIKRSMFKTDKGKLIINDFLEVPDFPGVFAIGDCALFLDPETQRPFPPTAQ 337
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 467
+A QA A NL A I + F + + G+M I+G+ + G+ + G
Sbjct: 338 IAEAQAKVAAKNLTALIKNSEKEKFVYHSKGQMAIIGKRSGIAT---FLGMNISGFWAWL 394
Query: 468 ARKLAYLIRLPTDEHRLKVGVSW 490
+ YL ++ T + R +V + W
Sbjct: 395 IWRNVYLSKIATFDKRTRVFLDW 417
>gi|406833218|ref|ZP_11092812.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Schlesneria paludicola DSM 18645]
Length = 437
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 103/421 (24%), Positives = 171/421 (40%), Gaps = 38/421 (9%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PR+ I+GGGF GL A L D +VL+VD++ +F+P+LY++ + +I
Sbjct: 2 PRVLIVGGGFAGLNLAKGL-----GDVPGVEVLVVDRTNHHLFQPLLYQVAMAGLSPADI 56
Query: 140 APRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
A LLA ++ + V+ + +L V+ + G + +D+LVL+
Sbjct: 57 AAPIRSLLARFNNIRVLQGEVRSVDTDRNL-------------VVTDFGEL-PFDYLVLA 102
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL---SELERRNFERLEEKGIVQAINVET 255
GA EFA TLE A + R++ E R E K ++ + V
Sbjct: 103 CGARHSYFGHDEWEEFAPGLKTLEQATEIRRRVLSAYESAERTTSLEERKRLLTFVVVGG 162
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCI------RRVGEFEASVKQPESGAIPN 309
G + A+ + + R I R +G F + + +
Sbjct: 163 GPTGVELAGAIGEMSRFTLAKDFRNIDATLARVILLEAGPRILGMFSEQLSARAARDLEQ 222
Query: 310 IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
+ + + ++ + ++ + VLW G K + ++ G
Sbjct: 223 LGVQIWTGSAVTKIDANGVDIGNERIISATVLWAAGVKA------SSLGKDSGFEVDRSG 276
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
+ + L VKGHP IF GD S +GRPLP TA VA QQ + + +
Sbjct: 277 RVIVENDLSVKGHPNIFVAGDQSCYTHQTGRPLPGTAPVAMQQGCYLANLIRIDVQGGKR 336
Query: 430 LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVS 489
PFRF + G+M +GR+ A V V + G I A L ++ L +RL+V ++
Sbjct: 337 TPFRFADKGQMATIGRSRAVVE---VGKFKMTGFIAWMAWLLVHIYYLTGFPNRLRVVLN 393
Query: 490 W 490
W
Sbjct: 394 W 394
>gi|385810344|ref|YP_005846740.1| NADH dehydrogenase [Ignavibacterium album JCM 16511]
gi|383802392|gb|AFH49472.1| NADH dehydrogenase [Ignavibacterium album JCM 16511]
Length = 411
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 94/432 (21%), Positives = 179/432 (41%), Gaps = 57/432 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I I+G GFGGL A L D + ++ L+D++ +F+P+LY++ + + +
Sbjct: 2 KKKILIIGAGFGGLTAAKNLA------DTEFEITLIDKTNHHLFQPLLYQVATAALSPSD 55
Query: 139 IAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA LL+ N ++ D V + ++H+ VN +S L E+D+L++
Sbjct: 56 IAVPIRSLLSDNKNIKVILDEVISIDKNNHI-VN-----------FKDSQL--EFDYLIV 101
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL----ERRNFERLEEKGIVQAINV 253
++GA + A TL DA + K+ E E+ L +K +
Sbjct: 102 AVGARHSYFGKNEWEQLAPGLKTLTDALVIREKIIEALELAEKETNHELMKKYL------ 155
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGY-----------FVRCIRRV-GEFEASVKQ 301
T + G P E A + K ++ Y + + R+ F+ + +
Sbjct: 156 -TFVIVGGGPTGVELAGAIAEIAKETMIKDYKNFRPEDTKVFLIEAMDRILSSFDKKLSE 214
Query: 302 PESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNR 359
+ N+ + + + + + + ++W G++ PLL + +R
Sbjct: 215 QAKEDLMNMGVEVKLNAKVENISQDGVHTNQEFIPSKTIIWAAGNQASPLLKSLNVETDR 274
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
G+ + + G+P IF +GD++ + +G LP AQVA QQ F
Sbjct: 275 --------AGRVIVKKDCSIPGNPEIFLIGDAAHFEEENGNVLPGVAQVAIQQGKFVAEV 326
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ I FR+++ G M +G+ A ++G+ L G I A + ++ L
Sbjct: 327 IKNQIPPERRPSFRYKDKGTMATIGKAKAVAE---IKGLKLSGVIAWLAWSIVHIFFLIG 383
Query: 480 DEHRLKVGVSWL 491
+R +V + W+
Sbjct: 384 FRNRFRVMIEWI 395
>gi|86158575|ref|YP_465360.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85775086|gb|ABC81923.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 453
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 150/383 (39%), Gaps = 35/383 (9%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
++ P + I+GGGF GLY A L + ++ LVD+ +F+P+LY++ + +
Sbjct: 8 EQHTPHVVIVGGGFAGLYAARELAG------ARVRITLVDRRNHHLFQPLLYQVATAALS 61
Query: 136 AWEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+IA +L+ V+ + P + L G ++YD+
Sbjct: 62 PADIAEPIRHVLSRQRNVRTLLAEAAAIEPEQR-------------RLRLADGYALDYDY 108
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFE--RLEEKGIVQAI 251
LV++ GA A FA TLEDA + R+ L+ ER + R + ++ +
Sbjct: 109 LVVAAGATHSYFGHDEWARFAPGLKTLEDALEIRRRVLTAFERAEADPDRQRREALLTFV 168
Query: 252 NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI------RRVGEFEASVKQPESG 305
V G + R + V R I R + S+
Sbjct: 169 VVGGGPTGVELAGALAEIARFTIPRDFRTVSTERARVILIEGSERVLPALPPSLSAAAQR 228
Query: 306 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
+ + + K + + P + + A VLW G P R +PL
Sbjct: 229 DLERLGVQVWTGKRVTGIDPRGVQVGEERVAARTVLWAAGV------AGAPLARTLGVPL 282
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425
+ G+ + L V GH I+ +GD + RD G +P A A QQ AG NL A +
Sbjct: 283 DPAGRVPVNADLTVPGHEEIYVVGDLALARDKHGAAIPGVAPAAIQQGRHAGRNLLATLR 342
Query: 426 DRPLLPFRFQNLGEMMILGRNDA 448
RP PF + + G M +GR A
Sbjct: 343 GRPRKPFAYFDKGVMATVGRGHA 365
>gi|434393985|ref|YP_007128932.1| NADH dehydrogenase (ubiquinone) [Gloeocapsa sp. PCC 7428]
gi|428265826|gb|AFZ31772.1| NADH dehydrogenase (ubiquinone) [Gloeocapsa sp. PCC 7428]
Length = 435
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 158/397 (39%), Gaps = 45/397 (11%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
VLLVD++ F P+LY++ E+ +IA LL F L+ H+
Sbjct: 30 VLLVDRNNYHTFIPLLYQVAVAELQPEQIAYPVRSLLQRLAFANF-----LMAEVTHID- 83
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DR 229
V++ GL + YD+L+LS G+E + +PGA ++A P TL++A + +
Sbjct: 84 -------FANQVVITDGLTIPYDFLILSTGSESQFLGIPGADKYALPMKTLQEAVYLRNH 136
Query: 230 KLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAA--------------LKVLSA 275
LS E + + E Q + T G P E A L
Sbjct: 137 ILSCFE----QAVREIDPAQRRLLLTFAIVGGGPTGVELAGALVELIQGRLVKDFPTLEM 192
Query: 276 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES-QI 334
+VQ++L R + + + + I + ++ P LE+ +
Sbjct: 193 EQVQVIL--LQSSDRLLADLPLRLSDYTYKQLQRIGVKVYLQARVSKVTPNAVYLENGAV 250
Query: 335 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 394
+ ++WT G + PP P A+GQ TL + HP+++ +GDS+ +
Sbjct: 251 IFSKTIVWTAGVQ-----ASPPTPTAELFP-AAKGQVAVLPTLQLPNHPQVYVVGDSAYV 304
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 454
+ G PLP A VA QQ A N+ I + PFR+ + G I+ RN
Sbjct: 305 -EQDGEPLPLVAPVALQQGTLAAQNILRQIKGKEPKPFRYVDKGRAAIIKRNAGVAQTG- 362
Query: 455 VEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
T G +L LP +RL V + WL
Sbjct: 363 --NFTFTGFPAWLLWLAIHLYYLPGGRNRLIVFLDWL 397
>gi|393795833|ref|ZP_10379197.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Candidatus Nitrosoarchaeum limnia BG20]
Length = 452
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 109/466 (23%), Positives = 195/466 (41%), Gaps = 88/466 (18%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K K +I ILGGGF G+ A +LES + D+ + +++++ + +F PML ++ SG ++
Sbjct: 3 KNKKKIVILGGGFAGVECARQLES-DFGDNSEIELVMISEDNFLLFTPMLPQVASGMIET 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
I ++ T +F++ RVK + P L T GT + G+ + YD+LV
Sbjct: 62 RHIVMPIREICKKT--KFYEGRVKNVDPFGKL-------VTLWGTA-DKRGISIHYDYLV 111
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE-------------------- 235
++LG+E + + A+ TL DA + +R + LE
Sbjct: 112 VALGSETNFFGMADVEKNAYTMKTLNDAVVLRNRAIDMLEQAENETDVILRDSFLTFVVV 171
Query: 236 --------------------RRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA 275
R+++ + ++ I + I +E P PG E K
Sbjct: 172 GGGFAGIETAGELLDLLLDARKHYHTIHKEDI-RVIVLEA--LPMILPGFNEKLAKFSKE 228
Query: 276 RKVQLVLGYFVRCIRRVGEF---EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 332
+ ++ G +R V F E +VK + ++ DKN G++S
Sbjct: 229 KMIE--RGIDIRLKTAVTSFDGIEVNVKSLDENLKDSV--DKN-------------GIDS 271
Query: 333 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 392
++WT G V P N + +G+ ++ L V P +FA+GD +
Sbjct: 272 --IRTKTLIWTAG-------VTPVNTIKRSMLKTDKGKVIVNDFLEVTEFPGVFAIGDCA 322
Query: 393 ALRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
D + RP TAQ+A QA A +NL A I + F + + G+M I+G+
Sbjct: 323 LFMDPQTNRPYAPTAQLAEAQAKIAAYNLKALIKNFEKKKFVYHSKGQMAIIGKRTGI-- 380
Query: 452 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAID 497
+F+ G+ + G + + YL ++ + ++ + W+ D
Sbjct: 381 ATFL-GMNISGFLAWLIWRNVYLSKVALPNKKFRIFLDWVIDILFD 425
>gi|340345792|ref|ZP_08668924.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520933|gb|EGP94656.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Candidatus Nitrosoarchaeum koreensis MY1]
Length = 452
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 106/457 (23%), Positives = 195/457 (42%), Gaps = 82/457 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K K ++ ILGGGF G+ A +LES ++++ + ++++V + +F PML ++ SG ++
Sbjct: 3 KNKKKVVILGGGFAGVECARQLESF-FKNNSEVELVMVSEDNFLLFTPMLPQVASGIIET 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
I + T +F++ R+K + P L T GT + G+ + YD+LV
Sbjct: 62 RHIVMPIRAICKKT--KFYEGRIKNVDPFGKL-------VTLWGTG-EKRGVSIYYDYLV 111
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRN----------------- 238
++LG+E + + A+ TL DA + +R + LE+ +
Sbjct: 112 VALGSETNFFGMADVEKNAYTMKTLNDAVVLRNRVVDMLEQADNETDTILRDSLLTFVIV 171
Query: 239 ---FERLEEKG--------------IVQAINVETTI---CPTGTPGNREAALKVLSARKV 278
F +E G + ++ + P PG E + +
Sbjct: 172 GGGFAGIETAGELLDLLLDARKHYPTIHKDDIRVIVLEALPMILPGFNEKLADFAKEKMI 231
Query: 279 QLVLGYFVRCIRRVGEF---EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 335
Q G ++ V F E SVK + P + DK+ I G+ ++
Sbjct: 232 Q--RGIEIKLRMAVTSFDGTEVSVKSLDEN--PKDSIDKSK----------INGIRTKT- 276
Query: 336 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 395
++WT G V P N + +G+ ++ L V P +FA+GD +
Sbjct: 277 ----LIWTAG-------VTPVNTIKRSMFKTDKGKIIVNDFLEVPEFPGVFAIGDCALFM 325
Query: 396 D-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 454
D + RP TAQ+A QA A NL A I + F + + G+M I+G+ +F
Sbjct: 326 DPQTNRPFAPTAQIAEAQAKIAAHNLNALIKNSEKEKFVYHSKGQMAIIGKRTGI--ATF 383
Query: 455 VEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+ G+ + G + + YL ++P+ + ++++ + W+
Sbjct: 384 L-GMNISGFLAWLIWRNVYLSKIPSPDKKVRIFLDWI 419
>gi|331697251|ref|YP_004333490.1| NADH dehydrogenase (ubiquinone) [Pseudonocardia dioxanivorans
CB1190]
gi|326951940|gb|AEA25637.1| NADH dehydrogenase (ubiquinone) [Pseudonocardia dioxanivorans
CB1190]
Length = 462
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 117/452 (25%), Positives = 190/452 (42%), Gaps = 73/452 (16%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P ++PRI I+G GF G + A L LV QV LV ++ F++ P+L E+ + +
Sbjct: 22 PLTREPRIVIVGSGFAGYHAARALARLV---HGAAQVSLVSSTDYFLYLPLLPEVATAIL 78
Query: 135 DAWEIAPRFADLLAN--------TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLES 186
D + A L +GV + R+ + P
Sbjct: 79 DPRRVTVPLAATLPGVSCVLSEVSGVDVEQRRIAMRTPE--------------------- 117
Query: 187 GLIVE--YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLE 243
G VE YD LV+++G+ +L +PG A F + +A + D ++E L
Sbjct: 118 GRAVEFGYDRLVIAVGSVNRLLPIPGVPRIAHGFRGIPEALYLRDHVTRQIE---LAELA 174
Query: 244 EKGIVQAINVETTICPTGTPGNREAALKVL-SARKVQLVLGYFVRCIRRVGEFEASVKQP 302
E +A + G G AA L +A V+ + IR + AS P
Sbjct: 175 EDPTERAARCTFVVVGAGYTGTELAAQGPLFTAALVRARPALHDQPIRWLLLDTASRVLP 234
Query: 303 ESGAIPNIA--ADKNSDKYILEL----------QPAIKGLESQIFEADLVLWTVGSKPLL 350
G P + AD+ + +E+ A++ Q+ ++W VG +P
Sbjct: 235 --GLDPRLGRTADQVLRRRGVEIGVRTSITEATDDAVRLTNGQLVPTRSLIWCVGVRP-- 290
Query: 351 PHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPATAQ 407
+ + D+ L R G+ DE L V GHP +FA GD++A+ D + G TAQ
Sbjct: 291 ------DPLVDDIGLPTRQGRLVVDEYLTVPGHPELFACGDAAAVPDPARPGELAAMTAQ 344
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 467
A +Q A N+ A + P+R ++LG + LG AA +P G+ L GP+
Sbjct: 345 HAQRQGRLAARNVAATLGRGTRAPYRHRDLGFAVDLGGTQAAANPV---GIPLSGPLAKV 401
Query: 468 ARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSV 499
+ +L +P + RL++ + W A+D+V
Sbjct: 402 VSRGYHLAAIPAN--RLRIAIDW----ALDAV 427
>gi|365899628|ref|ZP_09437519.1| putative NADH dehydrogenase FAD-containing subunit transmembrane
protein [Bradyrhizobium sp. STM 3843]
gi|365419589|emb|CCE10061.1| putative NADH dehydrogenase FAD-containing subunit transmembrane
protein [Bradyrhizobium sp. STM 3843]
Length = 424
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 119/469 (25%), Positives = 182/469 (38%), Gaps = 96/469 (20%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+G GFGGL T RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 11 VVIVGAGFGGLETTHRLAG------APVRITLIDRRNHHLFQPLLYQVATASLSTSEIA- 63
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVL----------LESGLIVE 191
P +L + P T GTV LE G V
Sbjct: 64 ---------------------WPIRYLVRDRPEVTTLFGTVTGIDAANRRVQLEDGTEVA 102
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQA 250
YD LVL+ GA FA TLEDA + R+ L ER E K
Sbjct: 103 YDTLVLATGARHAYFGHDEWEPFAPGLKTLEDATTLRRRILVAFERAERETDPAKRAALM 162
Query: 251 INVETTICPTG-----------------------TPGNR----EAALKVLSARKVQLVLG 283
V PTG T G R EA +VL+ L
Sbjct: 163 TFVIIGAGPTGVELAGTIAELARSTLPPDFRNIDTHGTRVLLIEAGPRVLAGFPDDLS-A 221
Query: 284 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 343
Y ++ + R+G E + QP + D N+D + + +A ++W
Sbjct: 222 YALKSLERIG-VEVVLGQPVT--------DCNADGVVYG---------GKQLDAKTIIWA 263
Query: 344 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 403
G + + P + G+ + L V GHP IFA+GD+ + +G+P+P
Sbjct: 264 AGVR------ASRAAEWLNAPADRAGRLQVAPDLTVPGHPEIFAIGDTITIPAWNGQPVP 317
Query: 404 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 463
A A Q+ + + A + R L PFR+ + G + +G+ A + +++ L G
Sbjct: 318 GIAPAAKQEGRYVAEAIKARLGGRSLSPFRYSHAGSLAQIGKRLAVIDFGWLK---LRGA 374
Query: 464 IGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA--LLQSTLTKVL 510
I LA++ L +RL V +SWL A D A L+ +KV+
Sbjct: 375 IAWWIWGLAHIYFLIGLRNRLAVALSWLWIHARDQRAARLITQGSSKVM 423
>gi|315649376|ref|ZP_07902465.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus vortex V453]
gi|315275364|gb|EFU38733.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus vortex V453]
Length = 397
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 164/415 (39%), Gaps = 110/415 (26%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ TA RL+ + ++ V LV++ + L+ +G
Sbjct: 5 PKIVILGAGYGGILTAQRLQKELNYNE--ADVTLVNRHDYHYITTHLHMPAAG------- 55
Query: 140 APRFADLLANTGVQFFK--DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
D + NT V K D K+ D + + H V+LE G + YD+LV+
Sbjct: 56 ----TDSIENTRVSISKLIDEFKI----DLVKSSVQEIRLHDKKVILEDGTL-SYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-------LSELERRNFERLE------- 243
LG EP+ +PG AE A ++ ++ R+ R+ L + ERR ER+
Sbjct: 107 GLGGEPETFGIPGLAEHAMTIRSI-NSVRLIREHIEYQFALYKNERRPQERINFVVGGAG 165
Query: 244 -----------------------EKGIVQAINVETTICPTGTPGNR----EAALKVLSAR 276
+ +V NVE P PG E A+ VL +
Sbjct: 166 FSGIEFVAELADRIPRLCKEYDVDPTLVNIYNVEA--APAALPGFAPELVEYAMNVLEKK 223
Query: 277 KVQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 335
V +G ++ C+ P N ++
Sbjct: 224 GVTFKMGIAIKECL------------------PGGVVLNNGEE----------------I 249
Query: 336 EADLVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSSA 393
A V+WT G + NRL + RG+ + DE L G+ I+ +GD+S
Sbjct: 250 RAATVVWTGGIR---------GNRLVEAAGFETMRGRVKVDEYLRAPGYENIYIIGDNSL 300
Query: 394 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ + GRP P TAQ+A QQ N+ AAI D+ + F F N G + LGR +
Sbjct: 301 IFNEEGRPYPPTAQMAMQQGVCCAQNIVAAIRDKSMRKFEFSNKGTVASLGRGEG 355
>gi|426402333|ref|YP_007021304.1| NADH dehydrogenase [Bdellovibrio bacteriovorus str. Tiberius]
gi|425859001|gb|AFY00037.1| NADH dehydrogenase [Bdellovibrio bacteriovorus str. Tiberius]
Length = 423
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 162/384 (42%), Gaps = 47/384 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ I+GGGF GL A + + + V L+D+ +F+P+LY++ + + EI+
Sbjct: 4 KVVIVGGGFAGLKAAR-----AFGNKEDVSVTLIDRRNYHLFQPLLYQVATAGLSPAEIS 58
Query: 141 PRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI------VEYD 193
+L+ V F D ++ +V L++ I ++YD
Sbjct: 59 GPIRGILSKYKNVSVFLDNLE--------------------SVDLKNKKIQVPDRTLDYD 98
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFERLEEKGIVQAIN 252
+L+L+ GA+ P E A TLE A + R+L ER E EK Q
Sbjct: 99 YLILACGAKHSYFAHPEWEENAPGLKTLEQATEIRRRLLMAFERAEKETDPEKQKQQLTF 158
Query: 253 VETTICPTGT--PGNREAALKVLSARKVQLVLGYFVRCI------RRVGEFEASVKQPES 304
V PTG G + + + + R I R + F + + +
Sbjct: 159 VIVGAGPTGVELAGTIGEISRHTLTKDFRHIDPSRTRVILIEAGPRILAAFHPDLSRKAA 218
Query: 305 GAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 364
+ ++ ++ + +++ L ++ +A +LW G +P N+ +P
Sbjct: 219 ADLEDLGVQIWTNTRVTDVKSDSVVLGDEVIKAATILWAAGVQP------SSINKTLGVP 272
Query: 365 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 424
L+ G+ ++ L +K HP +F LGD + +G+ LP A VA QQ A + I
Sbjct: 273 LDRAGRVIIEKDLSLKEHPEVFILGDQACYLTDNGQALPGLASVAMQQGTHAANQILREI 332
Query: 425 NDRPLLPFRFQNLGEMMILGRNDA 448
+ +P L F++ + G+M +GR A
Sbjct: 333 DGKPRLDFKYLDKGQMATIGRRKA 356
>gi|308070613|ref|YP_003872218.1| NADH dehydrogenase-like protein yjlD [Paenibacillus polymyxa E681]
gi|305859892|gb|ADM71680.1| NADH dehydrogenase-like protein yjlD [Paenibacillus polymyxa E681]
Length = 396
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 103/417 (24%), Positives = 157/417 (37%), Gaps = 113/417 (27%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I I+G G+GG+ TA +L+ + ++ V L+++ + L+ +G
Sbjct: 5 PKIVIVGAGYGGILTAQQLQKELKHNE--ADVTLINRHDYHYITTHLHMPAAGTDTIEHS 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A L+ V K VK + P + ++LE G + YD+LV+ L
Sbjct: 63 RIPIAQLIDEFKVDLVKGTVKEIIPKEK-------------KIVLEDGSL-SYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFP--------------------------------------FSTL 221
G EP+ +PG +FA FS +
Sbjct: 109 GGEPETFGIPGMDKFALTIRSINSVRLIREHIEYQLALYKNDGKPGRLNFVVGGAGFSGI 168
Query: 222 EDACRVDRKLSELERR---NFERLEEKGIVQAINVETTICPTGTPGNR----EAALKVLS 274
E + +L +L R +F R +Q INVE PT PG E A+ VL
Sbjct: 169 EFVAELADRLPQLARAYDIDFNR------IQIINVEA--APTALPGFDPELVEYAMDVLK 220
Query: 275 ARKVQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 333
+ V +G ++ C LQ + E +
Sbjct: 221 RKGVTFRIGIPIKEC----------------------------------LQDGVIVGEGE 246
Query: 334 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS 392
EA V+WT G + N + RG+ + D+ L GH IF +GDSS
Sbjct: 247 KIEAYTVVWTGGIRG--------NGLIEKAGFEVMRGRVKIDDFLRAPGHDDIFIIGDSS 298
Query: 393 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
+ + GRP P TAQ+A QQ NL A + + L F F N G + LG+ +A
Sbjct: 299 LMFNPEGRPYPPTAQIAMQQGVLCAKNLAATLRKKELHKFVFSNKGTVASLGKGEAV 355
>gi|319788350|ref|YP_004147825.1| NADH dehydrogenase (ubiquinone) [Pseudoxanthomonas suwonensis 11-1]
gi|317466862|gb|ADV28594.1| NADH dehydrogenase (ubiquinone) [Pseudoxanthomonas suwonensis 11-1]
Length = 430
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/434 (24%), Positives = 177/434 (40%), Gaps = 56/434 (12%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD+ P + ++GGGF GL+ +L W + + LVD+S +F+P+LY++ + +
Sbjct: 6 PDR--PHLVVIGGGFAGLWAT---RALAWSPLR---ITLVDRSNHHLFQPLLYQVATAGL 57
Query: 135 DAWEIAPRFADLLA---NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE 191
A +IA +L N G++ + V+ + P T L G +
Sbjct: 58 SAPDIAAPLRHILRRQRNVGIRLGE--VEAIDPQAR-------------TATLADGKALH 102
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLE--EKGIVQ 249
YD+L+L+ GA A+ A +L+DA + RKL FER E + +
Sbjct: 103 YDYLLLATGATHAYFGNEQWAQHAPGLKSLDDALELRRKLLL----AFERAEACDDPAER 158
Query: 250 AINVETTICPTGTPGNREAALKVLSARKVQLVLGYF---------VRCI----RRVGEFE 296
A +E I G G A AR + F VR I R + F
Sbjct: 159 AAWLEFAIVGGGPTGVELAGTLAEIARHT--LRDQFRNINPATARVRLIEAGPRVLASFP 216
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
+ + + + + ++ + ++ L + ++W G P
Sbjct: 217 EDLSEKARRQLEKLGVEVSTGVPVTDINAGGYRLGDTYVHSRTIVWAAGV------AASP 270
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
R +PL+ G+ + L V GHP IF GD +A+ + G P+P A A Q
Sbjct: 271 LARSLGVPLDRAGRVPVEPDLSVPGHPEIFVGGDLAAVEQADGSPVPGVAPAAKQMGRHV 330
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
+ A + P PFR+++ G + +GR A V + G+ L G + A++
Sbjct: 331 ARAIQARLQGAPARPFRYRDFGNLATIGRMAAVVD---IHGIRLSGVLAWWFWLAAHVFF 387
Query: 477 LPTDEHRLKVGVSW 490
L +RL V ++W
Sbjct: 388 LIGFRNRLVVLLNW 401
>gi|17230456|ref|NP_487004.1| hypothetical protein all2964 [Nostoc sp. PCC 7120]
gi|17132058|dbj|BAB74663.1| all2964 [Nostoc sp. PCC 7120]
Length = 442
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 108/441 (24%), Positives = 175/441 (39%), Gaps = 63/441 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ R+ I+G GFGGL A L VLL+D+ F P+LY++ +G+++
Sbjct: 3 RNRRVVIVGAGFGGLQAAQSLA------HSGADVLLIDRHNYHTFVPLLYQVATGQIEPE 56
Query: 138 EIAPRFADLLA----NTGVQFFKDRVK-LLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
IA +L N Q K +V+ L+ + + +G + T G + +Y
Sbjct: 57 YIAYPIRTILRRFSFNYRRQHHKPQVQFLMAEVEQIDFSGQIVKTAKGAI--------DY 108
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAIN 252
D+LVL+ G+ + V GA E+AFP +LE+A + + + + + Q +
Sbjct: 109 DFLVLATGSRTQFWGVNGAEEYAFPMRSLEEAVALRNHIFSCFEQAIQESDAAKRQQLLT 168
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR----VGEFEASVKQPESGAIP 308
TI G G A V R C+RR + E + +SG
Sbjct: 169 F--TIVGGGATGVEMAGALVEMLRG----------CLRRDCPTIDFGEVKIILVQSGDRL 216
Query: 309 NIAADKNSDKYILE----------LQPAIKGL--------ESQIFEADLVLWTVGSKPLL 350
+ K Y + LQ + L ++I V+WT G + L
Sbjct: 217 LVEFPKKLGNYTYKKLHQLGVEVYLQTRVSQLTEGFVHLDNAEIIPCASVIWTAGLEANL 276
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
P V +LP+ +G+ TL V HP ++A+GD A + +G+ L A A
Sbjct: 277 PGVS------EELPVAHKGKIVVHPTLQVLEHPNVYAIGD-LAYVEKNGKSLSGVAPEAL 329
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
QQ N+ I + PF + N G + I+G + G +
Sbjct: 330 QQGVAVARNIQQQIRGKSPKPFSYFNKGRLAIIGCYSGV---GKIGAFAFTGFLAWLMWL 386
Query: 471 LAYLIRLPTDEHRLKVGVSWL 491
+L+ LP RL V ++WL
Sbjct: 387 GVHLVYLPGYRSRLLVLLTWL 407
>gi|56421488|ref|YP_148806.1| NADH dehydrogenase [Geobacillus kaustophilus HTA426]
gi|56381330|dbj|BAD77238.1| NADH dehydrogenase [Geobacillus kaustophilus HTA426]
Length = 404
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 102/389 (26%), Positives = 165/389 (42%), Gaps = 48/389 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP + ILG G+GGL T +RL+ L+ ++ + LV++ + L+E +G +
Sbjct: 2 RKPNVVILGAGYGGLMTTVRLQKLIGVNE--ANITLVNKHDYHYETTWLHEASAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +D++ V+F +D V + P++ VLLE+G + YD+LV+
Sbjct: 60 RVRYPISDVIDRNKVKFIQDTVTKIIPNEK-------------KVLLENGELT-YDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG-----IVQAIN 252
+LG E + + G E+AF + + DA R R+ E + + EEK IV
Sbjct: 106 ALGFESETFGIKGLKEYAFSIANV-DAARQIREHIEYQFATYNAEEEKKEERLTIVVGGA 164
Query: 253 VETTICPTGTPGNREAAL---KVLSARKVQLVLGYFVRCIRRVGE----FEASVKQPESG 305
T I G NR L + KV+++ C+ F+ + +
Sbjct: 165 GFTGIEFLGELANRMPELCREYDIDPHKVRII------CVEAAPTALPGFDPELVEYAVS 218
Query: 306 AIPNIAADKNSDKYILELQP----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
+ + I E P KG + + +A V+W G + E
Sbjct: 219 QLERKGVEFRIGTAIKECTPDGIIVAKGDDVEEIKAGTVIWAAGVRGSRVIEESGFE--- 275
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNL 420
AR + + D L V GH IF +GD S + D + RP P TAQ+A Q+ NL
Sbjct: 276 ----AARARIKVDPYLRVPGHEDIFVVGDCSLVIDEETNRPYPPTAQIAMQEGQLCAKNL 331
Query: 421 WAAINDR-PLLPFRFQNLGEMMILGRNDA 448
I + L PF+ G + LG +DA
Sbjct: 332 AVLIRGQGELEPFKPDIKGTVCSLGHDDA 360
>gi|261420389|ref|YP_003254071.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. Y412MC61]
gi|319768056|ref|YP_004133557.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. Y412MC52]
gi|261376846|gb|ACX79589.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Geobacillus sp. Y412MC61]
gi|317112922|gb|ADU95414.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. Y412MC52]
Length = 407
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 102/389 (26%), Positives = 165/389 (42%), Gaps = 48/389 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP + ILG G+GGL T +RL+ L+ ++ + LV++ + L+E +G +
Sbjct: 5 RKPNVVILGAGYGGLMTTVRLQKLIGVNE--ANITLVNKHDYHYETTWLHEASAGTLHHD 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +D++ V+F +D V + P++ VLLE+G + YD+LV+
Sbjct: 63 RVRYPISDVIDRNKVKFIQDTVTKIIPNEK-------------KVLLENGELT-YDYLVI 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG-----IVQAIN 252
+LG E + + G E+AF + + DA R R+ E + + EEK IV
Sbjct: 109 ALGFESETFGIKGLKEYAFSIANV-DAARQIREHIEYQFATYNAEEEKKEERLTIVVGGA 167
Query: 253 VETTICPTGTPGNREAAL---KVLSARKVQLVLGYFVRCIRRVGE----FEASVKQPESG 305
T I G NR L + KV+++ C+ F+ + +
Sbjct: 168 GFTGIEFLGELANRMPELCREYDIDPHKVRII------CVEAAPTALPGFDPELVEYAVS 221
Query: 306 AIPNIAADKNSDKYILELQP----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
+ + I E P KG + + +A V+W G + E
Sbjct: 222 QLERKGVEFRIGTAIKECTPDGIIVAKGDDVEEIKAGTVIWAAGVRGSRVIEESGFE--- 278
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNL 420
AR + + D L V GH IF +GD S + D + RP P TAQ+A Q+ NL
Sbjct: 279 ----AARARIKVDPYLRVPGHEDIFVVGDCSLVIDEETNRPYPPTAQIAMQEGQLCAKNL 334
Query: 421 WAAINDR-PLLPFRFQNLGEMMILGRNDA 448
I + L PF+ G + LG +DA
Sbjct: 335 AVLIRGQGELEPFKPDIKGTVCSLGHDDA 363
>gi|258510842|ref|YP_003184276.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257477568|gb|ACV57887.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 393
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 157/386 (40%), Gaps = 68/386 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I ILG G+GGL TAL L D LV++ FK +L+E+ D A
Sbjct: 4 IVILGAGYGGLATALEL------DRHGIPFTLVNREPYHTFKTLLHEVAGARHDPRTYAL 57
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L + VK L SD L + G + YD L+++LG+
Sbjct: 58 SLEELFHRKTSEIIIAEVKNLRLSDKL--------------VETDGATLAYDTLIVALGS 103
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
+PG AE F D+ R +L R FER ++ G ++++ + G
Sbjct: 104 RTATFGLPGVAEHTFRL----DSLRAAMELHHHVEREFERYQQTG--NPVHLKVLVAGGG 157
Query: 262 TPGNREAALKVLSARKVQLV---LGYFVRCIRRVG----EFEASVKQPESGAIPNI---- 310
G V+L+ + + +R +G + + + +P++
Sbjct: 158 LTG-------------VELMGEWADWLPKRVRELGLPLTDLHLGLIHAHAEILPDVDHQL 204
Query: 311 ---AADKNSDKYI-LELQPAIKGLESQIF--------EADLVLWTVGSKPLLPHVEPPNN 358
A K ++ + L L + G E Q + EA ++WT G + P
Sbjct: 205 RAVAQAKLVERGVELILNERVAGAEPQAYLLASGRKLEAGTLVWTGGVEA------PALL 258
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
+ LP++AR + + DE L +G ++ +GD + D+ G LP T QVA Q G
Sbjct: 259 KEAGLPVDARNRVDVDEFLMARGVADVYVIGDCARFADAHGNVLPPTGQVAEQMGHHLGA 318
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILG 444
NL + RP LPF +++ G + LG
Sbjct: 319 NLVRRAHGRPPLPFVYRDHGMVASLG 344
>gi|170739548|ref|YP_001768203.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Methylobacterium sp. 4-46]
gi|168193822|gb|ACA15769.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Methylobacterium sp. 4-46]
Length = 465
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 161/387 (41%), Gaps = 31/387 (8%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD I I+GGG GL A +L + + K+ Q+ LV+++ ++KP L+E+ +G +
Sbjct: 28 PDPSLHHIVIVGGGAAGLELATKLGDTLGRG-KQAQITLVERNRTHIWKPHLHEVAAGTM 86
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVL-LESGLIVEYD 193
D A D LA F+ R+ + + +A ++ + V YD
Sbjct: 87 DVGRDA---VDYLAQASDHHFRYRIGEMTGLNRADREIYLAASYDAEGQEVTPARAVPYD 143
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINV 253
LV+++G+ PG EFA T E A R ++L R + E V+ +
Sbjct: 144 TLVIAVGSTGNDFGTPGVNEFAISLDTQEQAVRFHQRLVNRFIRAHAQPEP---VRPGQL 200
Query: 254 ETTICPTGTPGNREAALKVLSARKV------------QLVLGYFVRCIRRVGEFEASVKQ 301
TI G G AA + R+V L + R + A V +
Sbjct: 201 HVTIIGAGATGTELAAELHRTTRQVVAYGLDRIDPDRDLKITLVEAAERILPAVPARVAK 260
Query: 302 PESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--N 358
+ + + D + +++++P + + ++LV+W G V+ P+
Sbjct: 261 GAAQLLEGLGIDVRTSARVVQVRPDGVALADGDFIPSELVVWAAG-------VKAPDFLK 313
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAG 417
+ L + Q TL IFA+GD + L S +P+P AQ A QQA
Sbjct: 314 NIDGLETSRNNQLVVTPTLQTTSDQNIFAIGDCAFLISPSDNKPVPPRAQAAHQQASHVV 373
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILG 444
+ + RPL PFR+++ G ++ LG
Sbjct: 374 AQIRRRLTGRPLDPFRYRDFGSLVSLG 400
>gi|194333438|ref|YP_002015298.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Prosthecochloris aestuarii DSM 271]
gi|194311256|gb|ACF45651.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Prosthecochloris aestuarii DSM 271]
Length = 430
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 105/427 (24%), Positives = 174/427 (40%), Gaps = 52/427 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ I+GGGF G+ A L KP +V L+D+ +F+P+LY++ + A +
Sbjct: 3 HVVIVGGGFTGITAAREL-------GNKPDIRVTLIDRKNYHLFQPLLYQVAMSALGAGD 55
Query: 139 IAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++L+ + FK V+ + P TV + G + YD+L+L
Sbjct: 56 IAEPLRNMLSRYQNITVFKGVVESIDPEQK-------------TVHTDFGELT-YDYLIL 101
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+ G + EFA T+ A + R++ E ER + I + + T +
Sbjct: 102 ACGVKHHYFGHEEWEEFAPGLKTIAQATEIRRRVMEAYEAA-ERTSDPVIRKKL--LTFV 158
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCI--------------RRVGEFEASVKQPE 303
G P E A + + L F R I R +G F +
Sbjct: 159 IVGGGPTGVELAGSI--GEMSRHTLSKFYRNIDPKLTRIFIVEAAPRILGAFAPELASRA 216
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 363
S A+ N+ S + + + ++ EA VLW G + + +++
Sbjct: 217 SRALENLGVQIWSSSMVNNVDKNGVQIGNERIEASTVLWAAGVRAV-----SLGSKM-GA 270
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
++ G+ +E L V G+P IF GD + + PLP A VA QQ G N+
Sbjct: 271 EVDRSGRIIVEEDLSVPGYPEIFCGGDQAHFAHHTEYPLPGMAPVAMQQGRSIGKNILND 330
Query: 424 INDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHR 483
I + FR+++ G+M +GRN A V V + DG L ++ L T +HR
Sbjct: 331 IKGKTRKMFRYKDKGQMATIGRNKAIVE---VGRLKFDGAPAWLTWLLVHIYYLTTFKHR 387
Query: 484 LKVGVSW 490
+ V + W
Sbjct: 388 ILVLMQW 394
>gi|78188269|ref|YP_378607.1| NADH dehydrogenase [Chlorobium chlorochromatii CaD3]
gi|78170468|gb|ABB27564.1| NADH dehydrogenase [Chlorobium chlorochromatii CaD3]
Length = 442
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 101/441 (22%), Positives = 179/441 (40%), Gaps = 51/441 (11%)
Query: 67 SASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKP 124
+ +Q Y K R+ I+GGGF G+ A L KP +++L+D+ +F+P
Sbjct: 7 NTTQGYFISIPMKKRVVIVGGGFTGINAAKIL-------GNKPDLEIILIDRKNYHLFQP 59
Query: 125 MLYELLSGEVDAWEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVL 183
+LY++ + +IA ++LAN + FK V+ + ++ T++
Sbjct: 60 LLYQVAMTALGEGDIAAPLRNMLANYRNITVFKGIVERIDVANK-------------TII 106
Query: 184 LESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLE 243
+ I YD+L+L+ G + EFA TL A + R++ E R ER
Sbjct: 107 TDFNTI-SYDYLILACGVQHHYFGHNEWEEFAPGLKTLAQAKEIRRRVMEAYERA-ERTT 164
Query: 244 EKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI-------------- 289
+ V+ + T + G P E A + + L F R I
Sbjct: 165 DP--VERKKLLTFVIVGGGPTGVELAGSI--GEMSRYTLSKFYRNIDPKLTRIFIVEAAP 220
Query: 290 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 349
R +G F + + A+ + + + ++ + ++ EA VLW G
Sbjct: 221 RILGSFSPEMASKATRALEKLGVQVWTSSMVSDVDVNGVQIGNERIEAATVLWAAGVTA- 279
Query: 350 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 409
+ + + +A G+ + L + GHP IF GD + + G LP A VA
Sbjct: 280 ----TSISRNMDGVETDAIGRIVVENDLSIFGHPEIFVGGDLAHVEREDGTTLPGLAPVA 335
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
QQ N+ + + PFR+ + G+M +G+N A V ++ DG +
Sbjct: 336 QQQGRAIAHNILRDMQAKARKPFRYTDKGQMATIGKNKAIVEMGRLK---FDGIMAWLTW 392
Query: 470 KLAYLIRLPTDEHRLKVGVSW 490
+ ++ L + HR+ V + W
Sbjct: 393 LMVHIYFLTSFRHRVFVLMQW 413
>gi|375010075|ref|YP_004983708.1| NADH dehydrogenase-like protein yumB [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359288924|gb|AEV20608.1| NADH dehydrogenase-like protein yumB [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 409
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 102/389 (26%), Positives = 165/389 (42%), Gaps = 48/389 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP + ILG G+GGL T +RL+ L+ ++ + LV++ + L+E +G +
Sbjct: 7 RKPNVVILGAGYGGLMTTVRLQKLIGVNE--ANITLVNKHDYHYETTWLHEASAGTLHHD 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +D++ V+F +D V + P++ VLLE+G + YD+LV+
Sbjct: 65 RVRYPISDVIDRNKVKFIQDTVTKIIPNEK-------------KVLLENGELT-YDYLVI 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG-----IVQAIN 252
+LG E + + G E+AF + + DA R R+ E + + EEK IV
Sbjct: 111 ALGFESETFGIKGLKEYAFSIANV-DAARQIREHIEYQFATYNAEEEKKEERLTIVVGGA 169
Query: 253 VETTICPTGTPGNREAAL---KVLSARKVQLVLGYFVRCIRRVGE----FEASVKQPESG 305
T I G NR L + KV+++ C+ F+ + +
Sbjct: 170 GFTGIEFLGELANRMPELCREYDIDPHKVRII------CVEAAPTALPGFDPELVEYAVS 223
Query: 306 AIPNIAADKNSDKYILELQP----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
+ + I E P KG + + +A V+W G + E
Sbjct: 224 QLERKGVEFRIGTAIKECTPDGIIVAKGDDVEEIKAGTVIWAAGVRGSRVIEESGFE--- 280
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNL 420
AR + + D L V GH IF +GD S + D + RP P TAQ+A Q+ NL
Sbjct: 281 ----AARARIKVDPYLRVPGHEDIFVVGDCSLVIDEETNRPYPPTAQIAMQEGQLCAKNL 336
Query: 421 WAAINDR-PLLPFRFQNLGEMMILGRNDA 448
I + L PF+ G + LG +DA
Sbjct: 337 AVLIRGQGELEPFKPDIKGTVCSLGHDDA 365
>gi|91203146|emb|CAJ72785.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 402
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 95/400 (23%), Positives = 170/400 (42%), Gaps = 69/400 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ K I ++G G+GG+ + LRL L ++ + Q+ L+D++ K L+E V
Sbjct: 2 ESKKNIVVVGAGYGGITSVLRLARL-FRKHPEYQIHLIDRNPYHTLKTQLHE---AAVRK 57
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
E++ ++ + F V + +H+ V +E G + + +LV
Sbjct: 58 REVSIPINRIIQGRNIIFHLGEVTRIDAKEHI-------------VYMEGGAL-PFHYLV 103
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
++LG++ +PG E +F TL DA ++ + +L R E+ ++ +
Sbjct: 104 IALGSQVNFHNIPGLQENSFSLQTLRDAQQIYAHIDKLCARAASEPNEE--LRRDMLRFV 161
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR--RVGEFEASVKQPESG--AIPNIAA 312
I G G AA + Y V C V E + ESG +P + A
Sbjct: 162 IGGGGLSGIEFAAE----------LADYTVHCTHNCHVNSNEVEIIIVESGDHIVPRMEA 211
Query: 313 DKNSDKYILELQPAIKGL----------------ESQIFEADLVLWTVGSKPLLPHVEPP 356
+ + L+ +K + ++ + V+WT G+
Sbjct: 212 SFATRIHKKLLEKGVKIITRTKIISRTSDTTTLSSGEVVKTKTVIWTGGT---------- 261
Query: 357 NNRLHDL------PLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVA 409
R+H+L + G+ DE L V+G+P I+A+GD++ A+ S +P+PA AQ A
Sbjct: 262 --RIHELIGESGMKIGQSGRIVVDEFLQVEGYPFIYAIGDNALAINPYSKQPVPAAAQFA 319
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
QQ +N++A I P+ + LGE++ LGR+ A
Sbjct: 320 LQQGRLVAYNVYADIFRGMRKPYHPKVLGEVVSLGRHLAV 359
>gi|384565861|ref|ZP_10012965.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
glauca K62]
gi|384521715|gb|EIE98910.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
glauca K62]
Length = 452
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 192/431 (44%), Gaps = 49/431 (11%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI ++GGGF G+ RLE L+ D+ + LV ++ P+L ++ +G + +
Sbjct: 4 PRILVVGGGFAGVECVRRLERLLAPDEAS--ITLVAARNYQLYLPLLPQVAAGMLTPQSV 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVN-GPMACTHGGTVLLESGLIVEYDWLVLS 198
A L F + R+ P LGV+ C G + + I YD+LVL+
Sbjct: 62 AVSLRRL-------FRRTRI---APGVALGVDLDAKVCVVRG--ISDRIRIEPYDYLVLA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNF--ERLEEKGIVQAINVET 255
G+ + +PG AE A TL +A + D +++L+ ER E++ +Q + V
Sbjct: 110 PGSVTRTFDIPGLAEHARGMKTLAEAAYLRDHVIAQLDIAAAVPEREEKEARLQFVVVGG 169
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR---------RVGEFEASVKQPESGA 306
T T AAL L+A G I+ + E + + +
Sbjct: 170 GYSGTET----VAALHRLTAAAADRYPGLDPSMIKWHLVDIAPKLMPELGEDLGEKATSL 225
Query: 307 IPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKP--LLPHVEPPNNRLHDL 363
+ D + E+ + ++ + ++ ++WT G +P L+ ++ R
Sbjct: 226 LRRRGVDVALGVSVAEVGEETVRLTDGRVLPCHTLVWTAGVQPSPLIGTLDAETER---- 281
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRD---SSGRPLPATAQVAFQQADFAGWNL 420
G+ + E + V GHP +FA+GD++A+ D G P TAQ A +Q N+
Sbjct: 282 -----GRLKVTEYMDVPGHPGVFAVGDAAAVPDIAKGDGAICPPTAQHAQRQGRMVARNV 336
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 480
AA+ +P++P++ +++G ++ LG DA +P GV L G + + +++ L T
Sbjct: 337 VAALRGQPMVPYQHRDMGLVVDLGGTDAVANPL---GVRLTGLPAQTVTRGYHMMALHTS 393
Query: 481 EHRLKVGVSWL 491
R +V +W+
Sbjct: 394 VARARVLTNWV 404
>gi|297528907|ref|YP_003670182.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. C56-T3]
gi|297252159|gb|ADI25605.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. C56-T3]
Length = 407
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 102/389 (26%), Positives = 165/389 (42%), Gaps = 48/389 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP + ILG G+GGL T +RL+ L+ ++ + LV++ + L+E +G +
Sbjct: 5 RKPNVVILGAGYGGLMTTVRLQKLIGVNE--ANITLVNKHDYHYETTWLHEASAGTLHHD 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +D++ V+F +D V + P++ VLLE+G + YD+LV+
Sbjct: 63 RVRYPISDVIDRNKVKFIQDTVTKIIPNEK-------------KVLLENGELT-YDYLVI 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG-----IVQAIN 252
+LG E + + G E+AF + + DA R R+ E + + EEK IV
Sbjct: 109 ALGFESETFGIKGLKEYAFSIANV-DAARQIREHIEYQFATYNAEEEKKEERLTIVVGGA 167
Query: 253 VETTICPTGTPGNREAAL---KVLSARKVQLVLGYFVRCIRRVGE----FEASVKQPESG 305
T I G NR L + KV+++ C+ F+ + +
Sbjct: 168 GFTGIEFLGELANRMPELCREYDIDPHKVRII------CVEAAPTALPGFDPELVEYAVS 221
Query: 306 AIPNIAADKNSDKYILELQP----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
+ + I E P KG + + +A V+W G + E
Sbjct: 222 QLERKGVEFRIGTAIKECTPDGIIVAKGDDVEEIKAGTVIWAAGVRGSRVIEESGFE--- 278
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNL 420
AR + + D L V GH IF +GD S + D + RP P TAQ+A Q+ NL
Sbjct: 279 ----AARARIKVDPYLRVPGHEDIFVVGDCSLVIDEETNRPYPPTAQIAMQEGQLCAKNL 334
Query: 421 WAAINDR-PLLPFRFQNLGEMMILGRNDA 448
I + L PF+ G + LG +DA
Sbjct: 335 EVLIRGQGELEPFKPDIKGTVCSLGHDDA 363
>gi|414083015|ref|YP_006991721.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Carnobacterium maltaromaticum LMA28]
gi|412996597|emb|CCO10406.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Carnobacterium maltaromaticum LMA28]
Length = 404
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 165/392 (42%), Gaps = 60/392 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I ILG G+GGL R + + ++ LV+++E L+E+ SG
Sbjct: 6 KMKIVILGAGYGGL----RALKGLQKKHLNAEITLVNKNEYHYEATYLHEVASGANPPER 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I+ D++ F +D V + D TV L+ ++ YD+L+ +
Sbjct: 62 ISFAIKDVVDTKQTTFIQDTVIKVNKDDK-------------TVELDKTGLISYDYLIFA 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK------GIVQAIN 252
LG E + + G E+A P + A + + R F + E IV
Sbjct: 109 LGFESESFGITGVDEYALPMVDINTAVAIKEHM----HRQFAQYEATKDDALLSIVVCGA 164
Query: 253 VETTICPTGTPGNREAAL---KVLSARKVQL--------VLGYFVRCIRRVGE---FEAS 298
T+I G + L L A K+QL +L FV + G +
Sbjct: 165 GFTSIEYLGELTQQMPKLIKQYNLPADKIQLTCIEAMPTLLPMFVEKLSTYGIQKLKDRG 224
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
VK I + A D I E + E + +A ++WT G K ++
Sbjct: 225 VKFLVGTPIKEVTA----DTVIYE-----ENEERKSIKAKTIVWTTGVK--------GSS 267
Query: 359 RLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFA 416
+ R G+ + L G+P +F +GD SA+ + + RP P TAQ+A +QAD A
Sbjct: 268 VVGGSGFEERRGRVMVEADLTAPGYPEVFIIGDCSAVMNPENNRPYPTTAQIALKQADAA 327
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
NL A +N++P++PF F++ G + +G N+A
Sbjct: 328 VANLVAKVNNQPIVPFTFKSQGSVCSIGNNEA 359
>gi|386811981|ref|ZP_10099206.1| pyridine nucleotide-disulphide oxidoreductase [planctomycete KSU-1]
gi|386404251|dbj|GAB62087.1| pyridine nucleotide-disulphide oxidoreductase [planctomycete KSU-1]
Length = 402
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 100/406 (24%), Positives = 182/406 (44%), Gaps = 51/406 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K I ++G G+GG+ ALRL L Q + Q+ L+D++ K L+E V E
Sbjct: 4 KKNIVVIGAGYGGITAALRLARLFRQHPEY-QIHLIDRNPYHTLKTQLHE---AAVRKTE 59
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I+ ++ + F V + ++ + V +ESG + +++L+++
Sbjct: 60 ISIPIDRIIQRQNIVFHPGEVTRIDSNERI-------------VHMESGSL-SFNYLIIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL-ERRNFERLEEK-----------G 246
LG++ +PG E +FP TL DA + + +L R E +EE+ G
Sbjct: 106 LGSQVNFYNIPGLQENSFPLQTLRDAHLICDYIGQLCMRAASEPVEERRRDMLRFVIGGG 165
Query: 247 IVQAINVETTICPTGTPGNREAALKVLSARKVQLVL-GYFVRCIRRVGE-FEASV-KQPE 303
+ + + R + + R+V++++ G R + R+ E F + K+
Sbjct: 166 GLSGVEFAAELADHAAQCTRNSRV---DPREVEIIIVGPGSRVVPRMDESFATRIHKKLL 222
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGLES-QIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ I K I+ P L S ++ + ++WT G + R
Sbjct: 223 EKGVKIIPRSK-----IIGRTPDAATLSSGEVLKTKTLIWTGGIRV------SELARESG 271
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQADFAGWNLW 421
L + G+ DE L +G+P I+A+GDS+ A+ + P+PA AQ A QQ A +N++
Sbjct: 272 LKIGESGRIVVDEFLRAEGYPFIYAIGDSALAINPYTKEPVPAAAQFALQQGRLAAYNIY 331
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAA--VSPSFVEGVTLDGPIG 465
I+ P+ + LGE++ LGR+ A ++ F++ +T G +G
Sbjct: 332 TDISGGVRKPYHPKVLGEVVSLGRHLAVGWLALPFLKKITFVGFLG 377
>gi|392529866|ref|ZP_10277003.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Carnobacterium maltaromaticum ATCC 35586]
Length = 401
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 165/392 (42%), Gaps = 60/392 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I ILG G+GGL R + + ++ LV+++E L+E+ SG
Sbjct: 3 KMKIVILGAGYGGL----RALKGLQKKHLNAEITLVNKNEYHYEATYLHEVASGANPPER 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I+ D++ F +D V + D TV L+ ++ YD+L+ +
Sbjct: 59 ISFAVKDVVDTKQTTFIQDTVIKVNKDDK-------------TVELDKTGLISYDYLIFA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK------GIVQAIN 252
LG E + + G E+A P + A + + R F + E IV
Sbjct: 106 LGFESESFGITGVDEYALPMVDINTAVAIKEHM----HRQFAQYEATKDDALLSIVVCGA 161
Query: 253 VETTICPTGTPGNREAAL---KVLSARKVQL--------VLGYFVRCIRRVGE---FEAS 298
T+I G + L L A K+QL +L FV + G +
Sbjct: 162 GFTSIEYLGELTQQMPKLIKQYNLPADKIQLTCIEAMPTLLPMFVEKLSTYGIQKLKDRG 221
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
VK I + A D I E + E + +A ++WT G K ++
Sbjct: 222 VKFLVGTPIKEVTA----DTVIYE-----ENEERKSIKAKTIVWTTGVK--------GSS 264
Query: 359 RLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFA 416
+ R G+ + L G+P +F +GD SA+ + + RP P TAQ+A +QAD A
Sbjct: 265 VVGGSGFEERRGRVMVEADLTAPGYPEVFIIGDCSAVMNPENNRPYPTTAQIALKQADAA 324
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
NL A +N++P++PF F++ G + +G N+A
Sbjct: 325 VANLVAKVNNQPIVPFTFKSQGSVCSIGNNEA 356
>gi|440697249|ref|ZP_20879679.1| pyridine nucleotide-disulfide oxidoreductase [Streptomyces
turgidiscabies Car8]
gi|440280464|gb|ELP68195.1| pyridine nucleotide-disulfide oxidoreductase [Streptomyces
turgidiscabies Car8]
Length = 464
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 114/433 (26%), Positives = 190/433 (43%), Gaps = 43/433 (9%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI I+G GF G TA L L Q K + L++ ++ F++ P+L ++ +G ++
Sbjct: 3 RPRILIVGAGFAGYQTARTLARLTRQ---KADITLLNPTDHFLYLPLLPQVAAGVLEPRR 59
Query: 139 IAPRFADLLANTGVQFFKDRVKL-LCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ L +V+L L +D G++ ESG + YD LVL
Sbjct: 60 VTVSLPGTL---------RKVRLVLGEADADGIDLDARTVRYTDPEGESGTL-GYDRLVL 109
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETT 256
++G+ KL VPG AE A F L +A + D ++E + +A
Sbjct: 110 AVGSVNKLLPVPGVAENAHGFRGLPEALYLRDHVTRQVE---LAAAADDPKSRAARCTFV 166
Query: 257 ICPTGTPGNREAA----LKVLSARKVQLVLGYFVRCI------RRVGEFEASVKQPESGA 306
+ G G AA L RK + G R + R + + + + +
Sbjct: 167 VVGAGYTGTEVAAQGQLLTDALVRKQPVREGMRPRWLLLDTAPRVLPQLDEKLSRTADRV 226
Query: 307 IPNIAADKNSDKYILELQPAIKGL-ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
+ D ++ + E PA L + + E+ ++W VG +P P VE L
Sbjct: 227 LRQRGIDVRTETSVKEATPAGVLLSDGEFVESRTLVWCVGVRPD-PLVESIGQPLE---- 281
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNLWAA 423
RG+ D L V GHP +FA GD++A+ D G TAQ A++Q A N+ A+
Sbjct: 282 --RGRLIVDPFLQVPGHPEVFACGDAAAVPDLNKPGEFTGMTAQHAWRQGKVAARNVAAS 339
Query: 424 INDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHR 483
+ +R ++LG ++ LG AA +P GV+L GP+ + + +L +P + R
Sbjct: 340 LGVGSRTAYRHRDLGFVVDLGGVKAAANPL---GVSLSGPVAGAVARGYHLAAMPGN--R 394
Query: 484 LKVGVSWLTKSAI 496
++V WL + +
Sbjct: 395 VRVAADWLLDAVL 407
>gi|110597019|ref|ZP_01385308.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chlorobium ferrooxidans DSM 13031]
gi|110341210|gb|EAT59675.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chlorobium ferrooxidans DSM 13031]
Length = 431
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 101/430 (23%), Positives = 168/430 (39%), Gaps = 54/430 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKPMLYELLSGEVDA 136
K + I+GGGF G+ A L KP ++ ++D+ +F+P+LY++ +
Sbjct: 2 KKHVVIVGGGFAGINAAKVL-------GNKPDIEITIIDRKNYHLFQPLLYQVAMAALGE 54
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA ++LAN + FK V+ + V T YD+L
Sbjct: 55 GDIAAPLRNMLANYRNITVFKGIVRSVDIEKKTIVTDFREIT--------------YDYL 100
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK-GIVQAINVE 254
+L+ G + EFA TL A + R++ E +ER E V+ +
Sbjct: 101 ILACGVQHHYFGNNQWEEFAPGLKTLAQAKEIRRRVMEA----YERAERTTDFVERKKLL 156
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI--------------RRVGEFEASVK 300
T I G P E A + + L F R I R +G F +
Sbjct: 157 TFIIVGGGPTGVELAGSI--GEMSRYTLSKFYRNIDPKLTRIFIVEAAPRILGSFSPDLA 214
Query: 301 QPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRL 360
+ ++ + ++ + + + ++ EA VLW G +
Sbjct: 215 SKATRSLEKLGVQVWTNSMVSNVDENGVQIGNERIEAATVLWAAGVTA------TGIGKT 268
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 420
D+ + G+ DE L + HP IF GD + + GR LP A VA QQ G N+
Sbjct: 269 MDVDTDRIGRIIVDEDLSIPQHPEIFVGGDLANFQLEDGRTLPGLAPVALQQGRAIGKNI 328
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 480
+ R FR+++ G+M +G+N A V + DG + L ++ L +
Sbjct: 329 LLDLKGRTRKLFRYRDKGQMATIGKNKAIVEFG---SLKFDGILAWFTWLLVHIYFLTSF 385
Query: 481 EHRLKVGVSW 490
HR+ V + W
Sbjct: 386 RHRVFVLLQW 395
>gi|421867759|ref|ZP_16299412.1| NADH dehydrogenase [Burkholderia cenocepacia H111]
gi|358072172|emb|CCE50290.1| NADH dehydrogenase [Burkholderia cenocepacia H111]
Length = 430
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 158/392 (40%), Gaps = 52/392 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + Q+ +VD+S ++KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGRSGRA-QITVVDRSPTHIWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F + G + +K L + G + GG V+ L EYD L+L+LG
Sbjct: 65 VIFLAHARDHGYTYQPGELKGLDRARRRVQLGEIRSQDGGVVIDAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ VPG E + + + A + L R+ R E I
Sbjct: 123 SQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEP--------FRVAIVGA 174
Query: 261 GTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
G G AA L+V A + +L L R + F + + I
Sbjct: 175 GATGVELAAELSRLLEVAQAYGDDTVRERLQLTLLESGPRILNAFPPRISASAQRRLEQI 234
Query: 311 -----------AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN-- 357
+AD N Y + EADL++W G V+ P+
Sbjct: 235 GFRVLTSTRVTSADANGFHY----------GDGSFAEADLMVWAAG-------VKAPDFM 277
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFA 416
L L N Q TL G R+FA+GD S L D RPLP TAQVA QQA+
Sbjct: 278 QALGGLDTNRANQIVVGPTLQATGDERVFAIGDCGSLLPDGHERPLPPTAQVATQQAEHL 337
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+L A ++ P+ PF F + G ++ + DA
Sbjct: 338 AKHLPAWLDGTPIPPFAFHDFGALVSISDYDA 369
>gi|443291089|ref|ZP_21030183.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Micromonospora lupini str. Lupac 08]
gi|385885911|emb|CCH18290.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Micromonospora lupini str. Lupac 08]
Length = 433
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 104/434 (23%), Positives = 192/434 (44%), Gaps = 38/434 (8%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPR+ I+G GF G Y A + S + +D + ++++++ ++ F++ P+L E+ +G V+
Sbjct: 3 KPRVVIVGAGFAG-YHAAKTLSRIARD--RAEIVVLNSTDYFLYLPLLPEVAAGVVEPKR 59
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA L V ++ +DH+ + G T + YD LVL+
Sbjct: 60 IAVPLTGTLKGVRV--------VIGEADHVDLQNRWV---GFTQAEGEKNRLAYDRLVLA 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS---ELERRNFERLEEKGIVQAINVET 255
+G+ KL +PG E+A F L +A + + EL + + E+K + V
Sbjct: 109 VGSVNKLLPIPGVTEYAHGFRGLPEAVYLHDHIVRQIELAEQAEDPAEQKARSTFVVVGA 168
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLG----YFVRCIRRVGEFEASVKQPESGAIPNIA 311
T + + L A++ +L + R + E + + + +
Sbjct: 169 GYTGTEVAAHGQLFTDALHAQRPRLTVRPRWMLLDVAPRVLPELDKRMSETSHKVLNRRG 228
Query: 312 ADKNSDKYILELQ-PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RG 369
D + E +K + + ++W VG +P + +++L L RG
Sbjct: 229 VDVRMGTSVAEATCDGVKLTDGEYVPTCTLVWCVGVRP--------DPFVNELGLRTDRG 280
Query: 370 QAETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNLWAAINDR 427
+ TDE L V G+P +FA GD++A+ D + G+ TAQ A +Q N+ A+
Sbjct: 281 RLVTDEFLNVPGYPEVFACGDAAAVPDLVNPGQICGMTAQHAQRQGKRVAHNIAASYGFG 340
Query: 428 PLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVG 487
P++ +LG ++ LG DAA +P V L G + + +L+ +P + R +VG
Sbjct: 341 QRKPYKHHDLGWVVDLGGKDAAANPLH---VNLAGLPAKAVTRAYHLMAMPGN--RTRVG 395
Query: 488 VSWLTKSAIDSVAL 501
W+ +A+ A+
Sbjct: 396 ADWVLDAALTRSAV 409
>gi|448239216|ref|YP_007403274.1| putative pyridine nucleotide-disulfide oxidoreductase [Geobacillus
sp. GHH01]
gi|445208058|gb|AGE23523.1| putative pyridine nucleotide-disulfide oxidoreductase [Geobacillus
sp. GHH01]
Length = 407
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 102/389 (26%), Positives = 164/389 (42%), Gaps = 48/389 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP + ILG G+GGL T +RL+ L+ ++ + LV++ + L+E +G +
Sbjct: 5 RKPNVVILGAGYGGLMTTVRLQKLIGVNE--ANITLVNKHDYHYETTWLHEASAGTLHHD 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ D++ V+F +D V + P++ VLLE+G + YD+LV+
Sbjct: 63 RVRYLIRDVIDRNKVKFIQDTVTKIIPNEK-------------KVLLENGELT-YDYLVI 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG-----IVQAIN 252
+LG E + + G E+AF + + DA R R+ E + + EEK IV
Sbjct: 109 ALGFESETFGIKGLKEYAFSIANV-DAARQIREHIEYQFATYNAEEEKKEERLTIVVGGA 167
Query: 253 VETTICPTGTPGNREAAL---KVLSARKVQLVLGYFVRCIRRVGE----FEASVKQPESG 305
T I G NR L + KV+++ C+ F+ + +
Sbjct: 168 GFTGIEFLGELANRMPELCREYDIDPHKVRII------CVEAAPTALPGFDPELVEYAVS 221
Query: 306 AIPNIAADKNSDKYILELQP----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
+ + I E P KG + + +A V+W G + E
Sbjct: 222 QLERKGVEFRIGTAIKECTPDGIIVAKGDDVEEIKAGTVIWAAGVRGSRVIEESGFE--- 278
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNL 420
AR + + D L V GH IF +GD S + D + RP P TAQ+A Q+ NL
Sbjct: 279 ----AARARIKVDPYLRVPGHEDIFVVGDCSLVIDEETNRPYPPTAQIAMQEGQLCAKNL 334
Query: 421 WAAINDR-PLLPFRFQNLGEMMILGRNDA 448
I + L PF+ G + LG +DA
Sbjct: 335 AVLIRGQGELEPFKPDIKGTVCSLGHDDA 363
>gi|442318473|ref|YP_007358494.1| NADH dehydrogenase [Myxococcus stipitatus DSM 14675]
gi|441486115|gb|AGC42810.1| NADH dehydrogenase [Myxococcus stipitatus DSM 14675]
Length = 459
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/387 (23%), Positives = 159/387 (41%), Gaps = 53/387 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P + ILGGGF GL A +L K P ++ LVD+ +F+P+LY++ + + E
Sbjct: 9 PHVVILGGGFAGLRAAQQLV-------KAPVRLTLVDRHNHHLFQPLLYQVATATLSPSE 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA LL GV V + P + VLL G + +YD+L+++
Sbjct: 62 IAAPLRALLGPRGVSVLLADVTGVDPENK-------------RVLLADGEL-KYDYLIVA 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL---SELERRNFERLEEKGIVQAINVET 255
GA A FA ++EDA + R++ EL R + + ++ + +
Sbjct: 108 TGATHSYFGNDHWAPFAPGLKSIEDAVEIRRRVLVAYELAERETDPRIRRSLLNFVIIGA 167
Query: 256 TICPTGT--------------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQ 301
PTG PG+ K + R +++L + + V + + K
Sbjct: 168 --GPTGVEMAGSLAEISRSSLPGD----FKNIDTRDARIILIEGMDKVLPVYPDDLTTKA 221
Query: 302 PESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
+ + + + + + + + + EA V+W G P R
Sbjct: 222 RRT--LERLGVEVRTGARVTNIDATGVYIGDEHIEARTVIWAAGV------AASPVARSL 273
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 421
+PL+ G+ L V G IF GD ++L+ + G P+P A A Q+ A N+
Sbjct: 274 GVPLDRAGRVSVTPELTVPGREDIFVAGDLASLKQADGTPVPGLAPAAMQEGKHAARNIL 333
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDA 448
+ +P++PF + + G ++GR A
Sbjct: 334 HRLRGQPMVPFEYWDRGSYAVIGRGHA 360
>gi|254432553|ref|ZP_05046256.1| NADH dehydrogenase [Cyanobium sp. PCC 7001]
gi|197627006|gb|EDY39565.1| NADH dehydrogenase [Cyanobium sp. PCC 7001]
Length = 475
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 121/464 (26%), Positives = 186/464 (40%), Gaps = 99/464 (21%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
D PR+ I+GGGF GL A RL ++ +V L+D+ +F+P+LY++ +G V
Sbjct: 18 DPAWPRVVIVGGGFAGLQAARRLM------NQPVRVSLIDKRNFNLFQPLLYQVATGLVP 71
Query: 136 AWEIAPRFADLLANTG-VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
++A LLA VQ V+ L P+ G ++ +G + YD
Sbjct: 72 EADVATPLRRLLAKAANVQVLLGEVEDLDPA--------------GRAVVFNGRRLAYDH 117
Query: 195 LVLSLGA-------------EPKLDVVPGAAEFAFP-FSTLEDA---------------- 224
L+L+ G+ P + ++ A E + LE+A
Sbjct: 118 LILAAGSGSSYFGHERWRPLAPPMKILEHADEIRRRVLTALEEAEQCADPERRRRLQSVL 177
Query: 225 --------CRVDRKLSEL----ERRNFERLE-EKGIVQAINVETTICPTGTPGNREAALK 271
C + L EL R+F +L E V ++ + P EAA +
Sbjct: 178 VVGGGPSGCELAGSLHELLAHTVERDFRQLRPEHNRVILVDPGERLLRAMHPTLSEAAER 237
Query: 272 VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 331
L R V++VLG V I + P++GA P S++ I
Sbjct: 238 SLRGRGVEVVLGGRVVAIE-ADAVTLTQPGPQAGAPP-------SERRI----------- 278
Query: 332 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP---LNARGQAETDETLCVKGHPRIFAL 388
EA V WT G + H+ RL DL L+ G+ V HP I +
Sbjct: 279 ----EAATVCWTAGVRA--SHL---GRRLADLTGCGLDRGGRVIVQPDFSVPDHPEIRVV 329
Query: 389 GDSSALRDS-SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 447
GD A + RPLP A A Q + +L A + R + PFR+ +LG M ++G
Sbjct: 330 GDLCAYSHTPDTRPLPGMAGPAVQMGGWVALDLLATLQGRRMAPFRWTDLGSMAVIGPLS 389
Query: 448 AAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
A + G+ + G +G LA+L +P E+RL + WL
Sbjct: 390 AVAD---LRGLRVSGVLGWLLWGLAHLAFMPAAENRLTLLTRWL 430
>gi|239828206|ref|YP_002950830.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacillus sp. WCH70]
gi|239808499|gb|ACS25564.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Geobacillus sp. WCH70]
Length = 404
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 170/390 (43%), Gaps = 50/390 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP + ILG G+GGL T +RL+ LV ++ + LV++++ L+E +G +
Sbjct: 2 KKPNVVILGAGYGGLMTTVRLQELVGINE--ASITLVNKNDYHYETTWLHEASAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +D++ V+F +D V + P + VL+++G + YD+LV+
Sbjct: 60 RVRYPISDVIDRNKVKFVQDTVVKILPDEK-------------KVLMKNGELT-YDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK-----GIVQAIN 252
+LG E + + G E+AF + + +A R R+ E + + EEK IV
Sbjct: 106 ALGFESETFGIKGLKEYAFSIANV-NAARQIREHIEYQFATYNTEEEKRDERLTIVVGGA 164
Query: 253 VETTICPTGTPGNREAAL---KVLSARKVQLVLGYFVRCIRRVGE----FEASVKQPESG 305
T I G NR L + KV+++ C+ F+ + +
Sbjct: 165 GFTGIEFLGELVNRVPELCREYDIDPHKVRII------CVEAAPTALPGFDPELVEYAVN 218
Query: 306 AIPNIAADKNSDKYILELQP----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
+ + I E P KG + + +A V+W G + HV +
Sbjct: 219 QLERKGVEFKIGTAIKECTPEGIIVAKGDDIEEIKAGTVVWAAGVRG--SHV------ID 270
Query: 362 DLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQADFAGWN 419
+ A RG+ + D L V GH IF +GD S + + + RP P TAQ+A Q+ + N
Sbjct: 271 ESGFEAMRGRIKVDPFLRVPGHEDIFVVGDCSLIINEETNRPYPPTAQIAMQEGEVCAKN 330
Query: 420 LWAAINDR-PLLPFRFQNLGEMMILGRNDA 448
L I + L PFR G + LG +DA
Sbjct: 331 LAVLIRQQGELQPFRPDIKGTVCSLGEDDA 360
>gi|452910798|ref|ZP_21959475.1| NADH dehydrogenase [Kocuria palustris PEL]
gi|452833970|gb|EME36774.1| NADH dehydrogenase [Kocuria palustris PEL]
Length = 454
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 163/365 (44%), Gaps = 51/365 (13%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
D + +V L+D++ F+P+LY++ +G ++ ++ +L + RV+
Sbjct: 40 DARVRVTLIDRNIYKTFQPLLYQVATGGLNPGDVTM----VLRGLSRKAPNLRVR---QG 92
Query: 166 DHLGVNGP---MACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLE 222
D +GV+ ++ GG + + +D L+++ G GA A P T +
Sbjct: 93 DVVGVDPQRRIVSVEDGGAQTQQ----ISFDHLIIANGISANYFGTTGARRHAMPMYTRQ 148
Query: 223 DACRV-DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 281
DA + DR +ELER ++ + +I G G E A + R+ +L+
Sbjct: 149 DATAIRDRIFAELERSTRSDPDD-------FLHVSIVGGGATGV-EVAGALADFRRDELM 200
Query: 282 LGY-----FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI-LELQPAIKGL----- 330
Y V IR + + +KQ E + + AAD+ ++ + L +K +
Sbjct: 201 TMYPELDERVLQIRILQRGKDILKQFEDQKLRDYAADELRERGVELSTGQGVKAVGYDFV 260
Query: 331 ---ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD--LPLNARGQAETDETLCVKGHPRI 385
+ + E+D+ +W G+ P R+ + LP+ RG +ETL VKGHP I
Sbjct: 261 VLADDTVLESDITIWAAGTGP--------EKRVSEWGLPVTGRGALAVEETLQVKGHPGI 312
Query: 386 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
+A GD ++L + PL AQ A Q A + A + +PL PF + NLGE +GR
Sbjct: 313 YAAGDIASLDE----PLAQLAQPAIQTGVHAARMVRAEVEGQPLRPFHYTNLGEAATIGR 368
Query: 446 NDAAV 450
A V
Sbjct: 369 RAAIV 373
>gi|86141966|ref|ZP_01060490.1| putative NADH dehydrogenase [Leeuwenhoekiella blandensis MED217]
gi|85831529|gb|EAQ49985.1| putative NADH dehydrogenase [Leeuwenhoekiella blandensis MED217]
Length = 451
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/434 (22%), Positives = 173/434 (39%), Gaps = 53/434 (12%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD K PR+ I+GGGF GL +L+ K+ QV+L+D++ F+P+LY++ + +
Sbjct: 24 PDTKLPRVVIVGGGFAGLALVEKLKH------KEVQVVLLDKNNFHQFQPLLYQVATSAL 77
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ I F + FF+ L + + + T+ G+V YD+
Sbjct: 78 EPDSIVFPFRKQINGYKNVFFR-----LAEVEEIQPDSNTILTNKGSV--------SYDY 124
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIV----QA 250
LVL+ G + AE + + D+ + + + LE+ I +
Sbjct: 125 LVLATGTTTNFFGMDSVAENSLGMKDIRDSLNIRHMM-------LQNLEQAAITCDDKER 177
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGY--------FVRCIRRVGEFEASVKQP 302
+ + G P E A + K L Y + I + E ++
Sbjct: 178 DALTNFVIVGGGPAGVEMAGALAEFCKYILPKDYPEYPSSIMNIYLIEAIDELLGTMSDK 237
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGLE-----SQIFEADLVLWTVGSKPLLPHVEPPN 357
S D N + E G E + A ++WT G K P
Sbjct: 238 ASSKTLKYLEDLNVKVLLNEAVSNYDGNEVTTKSGKTILAKNLIWTAGVKGQFP------ 291
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFA 416
N + + + + +TD L V+G+ IFA+GD +AL + + P AQ A QQ +
Sbjct: 292 NGIDEKHIVRGNRIKTDANLKVEGYENIFAIGDIAALISKETPKGHPQVAQTAIQQGKYL 351
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
G ++ IN++ + PF++++ G + +G+ A + G + +L+
Sbjct: 352 GDSILNIINNKSIKPFKYKDKGSLATVGKRKAVAD---LGKFKFAGYFAWLLWSVVHLMS 408
Query: 477 LPTDEHRLKVGVSW 490
+ +RL VG +W
Sbjct: 409 ISGFRNRLMVGFNW 422
>gi|295135234|ref|YP_003585910.1| NADH dehydrogenase [Zunongwangia profunda SM-A87]
gi|294983249|gb|ADF53714.1| putative NADH dehydrogenase [Zunongwangia profunda SM-A87]
Length = 451
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/434 (22%), Positives = 173/434 (39%), Gaps = 53/434 (12%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD K PR+ I+GGGF GL +L+ K+ QV+L+D++ F+P+LY++ + +
Sbjct: 24 PDTKLPRVVIVGGGFAGLALVEKLKH------KEVQVVLLDKNNFHQFQPLLYQVATSAL 77
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ I F + FF+ L + + + T+ G+V YD+
Sbjct: 78 EPDSIVFPFRKQINGYKNVFFR-----LAEVEEIQPDSNTILTNKGSV--------SYDY 124
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIV----QA 250
LVL+ G + AE + + D+ + + + LE+ I +
Sbjct: 125 LVLATGTTTNFFGMDSVAENSLRMKDIRDSLNIRHMM-------LQNLEQAAITCDDKER 177
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGY--------FVRCIRRVGEFEASVKQP 302
+ + G P E A + K L Y + I + E ++
Sbjct: 178 DALTNFVIVGGGPAGVEMAGALAEFCKYILPKDYPEYPSSIMNIYLIEAIDELLGTMSDK 237
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGLE-----SQIFEADLVLWTVGSKPLLPHVEPPN 357
S D N + E G E + A ++WT G K P
Sbjct: 238 ASSKTLKYLEDLNVKVLLNEAVSNYDGNEVTTKSGKTILAKNLIWTAGVKGQFP------ 291
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFA 416
N + + + + +TD L V+G+ IFA+GD +AL + + P AQ A QQ +
Sbjct: 292 NGIDEKHIVRGNRIKTDANLKVEGYENIFAIGDIAALISKETPKGHPQVAQTAIQQGKYL 351
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
G ++ IN++ + PF++++ G + +G+ A + G + +L+
Sbjct: 352 GDSILNIINNKSIKPFKYKDKGSLATVGKRKAVAD---LGKFKFAGYFAWLLWSVVHLMS 408
Query: 477 LPTDEHRLKVGVSW 490
+ +RL VG +W
Sbjct: 409 ISGFRNRLMVGFNW 422
>gi|218439223|ref|YP_002377552.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7424]
gi|218171951|gb|ACK70684.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Cyanothece sp. PCC 7424]
Length = 455
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/428 (24%), Positives = 174/428 (40%), Gaps = 40/428 (9%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KPR+ I+GGGF GLYTA L+ D V L+D+ +F+P+LY++ +G +
Sbjct: 7 QKPRVVIVGGGFAGLYTAKALK------DAPVDVTLIDKRNFHLFQPLLYQVATGNISPA 60
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ P L + Q D V + P H ++L+ + YD L+
Sbjct: 61 DISSPLRLVLRHHKNTQVILDEVLDVDP-------------HTKQLILKGHEPISYDMLI 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
++ G FA T+EDA + R++ + E+ + I QA
Sbjct: 108 VATGVSHFYFGNDHWQTFAPGLKTIEDALEIRRRIY-MAFEAAEKETDPEIRQAWLTFVI 166
Query: 257 IC--PTGTP----------GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 304
+ PTG + E + + Q++L + I E SVK ES
Sbjct: 167 VGGGPTGVELAGAIAEIAHSSLEGDFRQIDTTATQILLLEGMDRILPPYPPELSVKAQES 226
Query: 305 GAIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + + + E Q+ A +LW G K + +
Sbjct: 227 LTKLGVTVQTKTLVTNVTEEMVTVRQEEQVKNIAAKTILWAAGVKA--SKMGEVLAQRTG 284
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
L+ G+ + L V GHP +F +GD + +PLP A VA QQ ++ +
Sbjct: 285 AKLDRAGRVMVEPDLSVVGHPDLFVIGDLANFSHQGDKPLPGVAPVAMQQGEYMAKLIKK 344
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 482
I P+ F + + G + ++G+N A V+ FV+ L G + A++ L ++
Sbjct: 345 RITKEPIEAFYYIDRGSLAVIGQNSAVVNLGFVK---LSGFLAWLIWVWAHIYYLIEFDN 401
Query: 483 RLKVGVSW 490
+L V V W
Sbjct: 402 KLVVMVQW 409
>gi|321312754|ref|YP_004205041.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis BSn5]
gi|320019028|gb|ADV94014.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis BSn5]
Length = 419
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/387 (27%), Positives = 165/387 (42%), Gaps = 46/387 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 18 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + D V+L +G + +YD+LV+
Sbjct: 76 CRYQIKDVINQSRVNFVQDTVKAIKIDDK-------------KVVLANGEL-QYDYLVIG 121
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LGA P+ + G E+AFP + + + R+ R+ EL+ + EK + TI
Sbjct: 122 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDR-----LTIV 175
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVK-----QPESGAIPNIAA 312
G L L+AR +L Y V R + R+ EA+ PE
Sbjct: 176 VGGAGFTGIEFLGELAARVPELCKEYDVDRSLVRIVCVEAAPTVLPGFDPELVDYAVHYL 235
Query: 313 DKNSDKY-----ILELQP-----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
++N ++ + E P K E + ++ V+W G + P VE
Sbjct: 236 EENGVEFKIGTAVQECTPEGVRVGKKDEEPEQIKSQTVVWAAGVRG-HPIVEEAGFE--- 291
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLW 421
N RG+ + + L GH +F LGDSS + + + RP P TAQ+A QQ NL
Sbjct: 292 ---NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNEDTERPYPPTAQIAMQQGVTVAKNLG 348
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDA 448
I L F+ G + LG ++A
Sbjct: 349 RLIKGGELEEFKPDIKGTVASLGEHNA 375
>gi|407643173|ref|YP_006806932.1| putative NADH dehydrogenase [Nocardia brasiliensis ATCC 700358]
gi|407306057|gb|AFT99957.1| putative NADH dehydrogenase [Nocardia brasiliensis ATCC 700358]
Length = 391
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 160/383 (41%), Gaps = 67/383 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI ILGGG+ G+ A RL + D + + LV+ S RF + ++++ +G+ E+A
Sbjct: 6 RIVILGGGYTGMVAAARLARRTRKQDVR--ITLVNPSARFTERLRMHQIAAGQ----ELA 59
Query: 141 P-RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
R AD+LA TGV+F + L P+ G VL++ + YD L+ +L
Sbjct: 60 DHRIADILAGTGVEFVQGWATSLDPAS-------------GHVLVDGTRTLPYDELIYAL 106
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI-------- 251
G+ D+VPGAA+ A+ + A R +L+ + + G + I
Sbjct: 107 GSSTDTDIVPGAADHAWTLNDPRAAHRFAERLNVVAAQGGTVAVCGGGLTGIEAAAEIAE 166
Query: 252 ---NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIP 308
+ T+ +G PG A+ AR Y R R+G
Sbjct: 167 NHPGLRVTLISSGAPG----AMMSDKARA------YLNRAFDRLGVV------------- 203
Query: 309 NIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA 367
+ + + +L P A++ + ADL LWT G + + +
Sbjct: 204 -----REIGRAVTKLLPDAVELAGGTVVPADLTLWTTGVRVAP------LAAAAGIATDE 252
Query: 368 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 427
RG DETL HP I A+GD++A+R G+ + T Q A + + + +
Sbjct: 253 RGLIVVDETLRSVSHPNIHAVGDAAAIRMPWGQ-IHGTCQSGIPTAAYTADAIARELRGK 311
Query: 428 PLLPFRFQNLGEMMILGRNDAAV 450
PFRF + + LGR DA +
Sbjct: 312 APKPFRFGYFHQPVSLGRRDAII 334
>gi|37520740|ref|NP_924117.1| NADH dehydrogenase [Gloeobacter violaceus PCC 7421]
gi|35211735|dbj|BAC89112.1| gll1171 [Gloeobacter violaceus PCC 7421]
Length = 419
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 72/122 (59%), Gaps = 19/122 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQSERFVFKPMLYELLSGEVDAWEI 139
R ILGGGF GL+TALRL + P V+LVD+SERF FKP+LYELLSGE+D +++
Sbjct: 9 RTVILGGGFTGLFTALRLNR-----RRYPHPVVLVDRSERFSFKPLLYELLSGEMDVYQV 63
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
PRF +LL + + F +D V+ + G V LESGL Y LVL+L
Sbjct: 64 WPRFEELLRGSRITFIQDAVQTI-------------DLEGRWVELESGLSYAYSNLVLAL 110
Query: 200 GA 201
G
Sbjct: 111 GG 112
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 15/165 (9%)
Query: 332 SQIFEADLVLWTVG----SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFA 387
++I A V+WT G + P P N G+ T + P +FA
Sbjct: 255 AEIIPAAAVVWTGGGGGATMPFKLQGLSPEG------YNKNGRLLVTPTWQLPNFPEVFA 308
Query: 388 LGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 447
GD + D P P TAQ A+Q+ + +N+ A R + + LG MM LG +
Sbjct: 309 GGDLALDPD---HPQPTTAQAAYQEGEAIAYNIEALARGRQIAVAPVRQLGTMMKLGLGE 365
Query: 448 AAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 492
AV + + G +G R+L YL LPT + K WLT
Sbjct: 366 GAV--EVFDRYEIAGRLGLLIRQLRYLGLLPTPIYSFKATAYWLT 408
>gi|428280702|ref|YP_005562437.1| hypothetical protein BSNT_04723 [Bacillus subtilis subsp. natto
BEST195]
gi|291485659|dbj|BAI86734.1| hypothetical protein BSNT_04723 [Bacillus subtilis subsp. natto
BEST195]
Length = 419
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/387 (27%), Positives = 165/387 (42%), Gaps = 46/387 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 18 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + D V+L +G + +YD+LV+
Sbjct: 76 CRYQIKDVINQSRVNFVQDTVKAIKIDDK-------------KVVLANGEL-QYDYLVIG 121
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LGA P+ + G E+AFP + + + R+ R+ EL+ + EK + TI
Sbjct: 122 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDR-----LTIV 175
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVK-----QPESGAIPNIAA 312
G L L+AR +L Y V R + R+ EA+ PE
Sbjct: 176 VGGAGFTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYL 235
Query: 313 DKNSDKY-----ILELQP-----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
++N ++ + E P K E + ++ V+W G + P VE
Sbjct: 236 EENGVEFKIGTAVQECTPEGVRVGKKDEEPEQIKSQTVVWAAGVRG-HPIVEEAGFE--- 291
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLW 421
N RG+ + + L GH +F LGDSS + + + RP P TAQ+A QQ NL
Sbjct: 292 ---NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNEDTERPYPPTAQIAMQQGITVAKNLG 348
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDA 448
I L F+ G + LG ++A
Sbjct: 349 RLIKGGELEEFKPDIKGTVASLGEHNA 375
>gi|197122132|ref|YP_002134083.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anaeromyxobacter sp. K]
gi|196171981|gb|ACG72954.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Anaeromyxobacter sp. K]
Length = 453
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 150/382 (39%), Gaps = 35/382 (9%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + I+GGGF GLY A L ++ LVD+ +F+P+LY++ + +
Sbjct: 9 QQTPHVVIVGGGFAGLYAARELAG------APVRITLVDRRNHHLFQPLLYQVATAALSP 62
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA +L+ V+ + P+ + L G ++YD+L
Sbjct: 63 ADIAEPIRHVLSRQRNVRTLLAEAAAVEPAQR-------------RLRLADGYALDYDFL 109
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERR--NFERLEEKGIVQAIN 252
V++ GA A FA TLEDA + R+ L+ ER + +R + ++ +
Sbjct: 110 VVAAGATHSYFGHDEWARFAPGLKTLEDALEIRRRVLTAFERAEADPDRQRREALLTFVV 169
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI------RRVGEFEASVKQPESGA 306
V G + R + V R I R + S+
Sbjct: 170 VGGGPTGVELAGALAEIARFTVPRDFRTVSTERARVILIEGSERVLPALPPSLSAAAQRD 229
Query: 307 IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 366
+ + + K + + P + + A VLW G P R +PL+
Sbjct: 230 LERLGVQVWTGKRVTGIDPRGVQVGEERVAARTVLWAAGV------AGAPLARTLGVPLD 283
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
G+ L V GH I+ +GD + RD G +P A A QQ AG NL A +
Sbjct: 284 PAGRVPVSPDLTVPGHEEIYVVGDLALARDKHGAAIPGVAPAAIQQGRHAGRNLLATLRG 343
Query: 427 RPLLPFRFQNLGEMMILGRNDA 448
RP PF + + G M +GR A
Sbjct: 344 RPRTPFVYFDKGVMATVGRGRA 365
>gi|365155019|ref|ZP_09351413.1| NADH dehydrogenase-like protein yumB [Bacillus smithii 7_3_47FAA]
gi|363628806|gb|EHL79513.1| NADH dehydrogenase-like protein yumB [Bacillus smithii 7_3_47FAA]
Length = 404
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 95/411 (23%), Positives = 176/411 (42%), Gaps = 94/411 (22%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL+ ++ Q++ +++LV++ + L+E +G +
Sbjct: 3 KPKIVVLGAGYGGLMTVTRLQKMLSQNE--AEIVLVNKHDYHYETTWLHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++++ + V+F + V+ + P+++ V+L +G + +YD+LV++
Sbjct: 61 VRYAISNVINRSKVKFVQATVENIKPNEN-------------KVVLNNGEL-DYDYLVVA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV---------------DRK------------- 230
LG E + + G E+AF +++ A R+ D+K
Sbjct: 107 LGPESETFGIKGLKEYAFAITSVNAARRIREHIETQFATYNTEKDKKEERLTIVVGGAGF 166
Query: 231 -----LSELERRNFERLEEKGI----VQAINVET--TICPTGTPGNREAALKVLSARKVQ 279
L EL R E E + V+ I VE T+ P P + A++ L + V+
Sbjct: 167 TGIEFLGELTNRVPELCREYDVDFQKVRIICVEAAPTVLPGFDPELVQYAMEQLQKKGVE 226
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 339
+G ++K+ I +A +N E++ +A
Sbjct: 227 FRIG-------------TAIKEATPDGII-VAKGEN---------------ETEEIKAGT 257
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPL-NARGQAETDETLCVKGHPRIFALGDSS-ALRDS 397
V+W G + N+ + N R + + +E L G+ +F +GD S + +
Sbjct: 258 VVWAAGVR--------GNSVIEKAGFENNRARVKVEEDLRAPGYNNVFIVGDCSLVINEE 309
Query: 398 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ RP P TAQ+A QQ N+ A + + F F N G + LG +DA
Sbjct: 310 TNRPYPPTAQIAMQQGVVCAKNIVALLKGQETQKFVFDNKGTVCSLGDDDA 360
>gi|375310126|ref|ZP_09775404.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus sp. Aloe-11]
gi|375078079|gb|EHS56309.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus sp. Aloe-11]
Length = 396
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 162/412 (39%), Gaps = 103/412 (25%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I I+G G+GG+ TA +L+ + ++ V L+++ + L+ +G
Sbjct: 5 PKIVIVGAGYGGILTAQQLQKELKHNE--ANVTLINRHDYHYITTHLHMPAAGTDTIEHS 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A L+ V K VK + P + ++LE G + YD+LV+ L
Sbjct: 63 RIPIAQLIDEFKVDLVKGTVKEIIPKEK-------------KIVLEDGSL-SYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE-----------RRNF--------- 239
G EP+ +PG +FA ++ ++ R+ R+ E + R NF
Sbjct: 109 GGEPETFGIPGMDKFALTIRSI-NSVRLIREHIEYQLALYKNDGKPGRLNFVVGGAGFSG 167
Query: 240 --------ERLEEKGI--------VQAINVETTICPTGTPGNR----EAALKVLSARKVQ 279
+RL + +Q INVE PT PG E A+ VL + V
Sbjct: 168 IEFVAELADRLPQLAKAYDIDFNRIQIINVEA--APTALPGFDPELVEYAMDVLKRKGVN 225
Query: 280 LVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 338
+G ++ C+ E G I E + EA
Sbjct: 226 FRIGIPIKECL-------------EDGVIVG---------------------EGEKIEAC 251
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS 397
V+WT G + N + RG+ + D+ L H IF +GDSS + +
Sbjct: 252 TVVWTGGIRG--------NGLIEKAGFEVMRGRVKIDDFLRAPEHDDIFIIGDSSLMFNP 303
Query: 398 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
GRP P TAQ+A QQ NL A + ++ L F F N G + LG+ +A
Sbjct: 304 EGRPYPPTAQIAMQQGVICAKNLAATLRNKELNKFVFSNKGTVASLGKGEAV 355
>gi|320450839|ref|YP_004202935.1| NADH dehydrogenase [Thermus scotoductus SA-01]
gi|320151008|gb|ADW22386.1| NADH dehydrogenase [Thermus scotoductus SA-01]
Length = 395
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 148/344 (43%), Gaps = 42/344 (12%)
Query: 112 LLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN 171
LL+D +F+P+LY++ +G ++ +A LL +F RV+
Sbjct: 32 LLLDARNHHLFQPLLYQVATGFLEGPAVAYPLRALLRRG--RFLLGRVE----------- 78
Query: 172 GPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL 231
G + LE G + Y +LV++ G+ P VPG E A TL A RV +L
Sbjct: 79 --RVDLEGKRLFLEGGDALPYRFLVVATGSLPSDLGVPGVREHALFLKTLGQALRVRYRL 136
Query: 232 SELERRNFERLEEKGIVQAINVETTICPTGT--PGNREAALKVLSARKVQLVLGYFVRCI 289
E E+ +G + V PTG G L+ R V V +
Sbjct: 137 LE----ALEKAARRGRPLDLLV-VGGGPTGVELAGALSEFLRYALPRDFPEVPAGAVTLL 191
Query: 290 ----RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTV 344
R + F ++ + GA+ + + E+ ++ + + DLVLW V
Sbjct: 192 EAGPRLLPAFRPALGRYAEGALAQLGVRVRLGAQVAEVGEGWVRLSGGERLKGDLVLWAV 251
Query: 345 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
G + N L LP +ARG+ TD L + G+P ++ +GD + L P
Sbjct: 252 GVR---------GNPLPGLPADARGRVPTDPCLRLVGYPEVYVVGDLNGL------GFPQ 296
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
A VA QQ +A NL A+ ++ LPFR+++ G++ ++GRN A
Sbjct: 297 LAPVALQQGRWAARNLLRALREQDPLPFRYRDRGQLAVIGRNRA 340
>gi|405355405|ref|ZP_11024631.1| NADH dehydrogenase [Chondromyces apiculatus DSM 436]
gi|397091747|gb|EJJ22549.1| NADH dehydrogenase [Myxococcus sp. (contaminant ex DSM 436)]
Length = 449
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/386 (23%), Positives = 161/386 (41%), Gaps = 55/386 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILGGGF GLY A L K P +V LVD+ +F+P+LY++ + + EIA
Sbjct: 1 MVILGGGFAGLYAARHLY-------KAPVRVTLVDRQNHHLFQPLLYQVATATLSPSEIA 53
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
LL V V GV+ T G VLL G + +YD+LV++ G
Sbjct: 54 APLRALLGRHQVGVVLAEVT--------GVD-----TAGKRVLLSDGEL-KYDYLVVATG 99
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKL---SELERRNFERLEEKGIVQAINVETTI 257
A A FA ++EDA ++ R++ EL R + + ++ + +
Sbjct: 100 ATHSYFGNDKWAAFAPGLKSIEDAVQIRRRILVAFELAEREPDPEIRRSLLNFVIIGA-- 157
Query: 258 CPTGT--------------PGNREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQP 302
PTG PG+ + + ++ +++L + + RV + +
Sbjct: 158 GPTGVELAGSLAEISRHSLPGD----FRNIDPKQARIIL---IEGVDRVLPAYPDDLSSK 210
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + + + + + + ++ A VLW G P R
Sbjct: 211 ALRTLEKLGVEVRTGARVTNINEEGVFIGTEFIPARTVLWAAGV------AASPVARSLG 264
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
+ L+ G+ L V GH +F +GD +++ D+ G+P+P A A Q+ A N+
Sbjct: 265 VELDRAGRVLVTPELTVPGHEDVFVVGDLASINDADGKPVPGLAPAAMQEGKHAAHNIRR 324
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDA 448
+ +P+ PF + + G ++GR A
Sbjct: 325 RLQGKPMEPFSYWDRGSYAVIGRGHA 350
>gi|354584842|ref|ZP_09003734.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus lactis 154]
gi|353191393|gb|EHB56900.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus lactis 154]
Length = 397
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 106/400 (26%), Positives = 170/400 (42%), Gaps = 80/400 (20%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GG+ TA RL+ + ++ V LV++ + L+ +G
Sbjct: 5 PKIVILGAGYGGILTAQRLQKELNYNE--ADVTLVNRHDYHYITTHLHMPAAG------- 55
Query: 140 APRFADLLANTGVQFFK--DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
D + NT V K D K+ D + + H V+LE G + YD+LV+
Sbjct: 56 ----TDSIENTRVSISKLIDEFKI----DLVKSSVQEIRLHDKKVILEDGTL-SYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-------LSELERRNFERL-------- 242
LG EP+ +PG AE A ++ ++ R+ R+ L + ERR ER+
Sbjct: 107 GLGGEPETFGIPGLAEHAMTIRSI-NSVRLIREHIEYQFALYKNERRPQERINFVVGGAG 165
Query: 243 --------EEKGIVQAINVETTICPT-GTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
E + + E + P N EAA L +LV Y +R + + G
Sbjct: 166 FSGIEFVAELADRIPKLCKEYDVDPALVNIYNVEAAPSALPGFAPELV-DYAIRVLEKKG 224
Query: 294 ---EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350
+F ++K+ GA+ +L I+ + V+WT G +
Sbjct: 225 VTFKFGVAIKECLPGAV------------LLNNGEEIR--------SQTVVWTGGIR--- 261
Query: 351 PHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 408
NRL + RG+ + DE L G+ I+ +GD+S + + GRP P TAQ+
Sbjct: 262 ------GNRLVEAAGFETMRGRVKVDEYLRAPGYENIYIIGDNSLIFNDEGRPYPPTAQI 315
Query: 409 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
A QQ N+ A+I + + F F N G + LG+ +
Sbjct: 316 AMQQGVCCAQNIVASIRGKAMRKFEFHNKGTVASLGKGEG 355
>gi|390455460|ref|ZP_10240988.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Paenibacillus peoriae KCTC 3763]
Length = 396
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/419 (24%), Positives = 160/419 (38%), Gaps = 113/419 (26%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I I+G G+GG+ TA +L+ + ++ V L+++ + L+ +G
Sbjct: 3 KIPKIVIVGAGYGGILTAQQLQKELKHNE--ANVTLINRHDYHYITTHLHMPAAGTDTIE 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
A L+ V K VK + P + ++LE G + YD+LV+
Sbjct: 61 HSRIPIAQLIDEFKVDLVKGTVKEIIPKEK-------------KIVLEDGSL-SYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFP--------------------------------------FS 219
LG EP+ + G +FA FS
Sbjct: 107 GLGGEPETFGIAGMDKFALTIRSINSVRLIREHIEYQLALYKNDGKPGRLNFVVGGAGFS 166
Query: 220 TLEDACRVDRKLSELERR---NFERLEEKGIVQAINVETTICPTGTPGNR----EAALKV 272
+E + +LS+L + +F R +Q INVE PT PG E A++V
Sbjct: 167 GIEFVAELADRLSQLAKAYDIDFNR------IQIINVEA--APTALPGFDPELVEYAMEV 218
Query: 273 LSARKVQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 331
L + V +G ++ C+ E G I E
Sbjct: 219 LKRKGVNFRIGIPIKECL-------------EDGVIVG---------------------E 244
Query: 332 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGD 390
+ EA V+WT G + N + RG+ + D+ L H IF +GD
Sbjct: 245 GEKIEACTVVWTGGIRG--------NGLIEQAGFEVMRGRVKIDDFLRAPDHDDIFIIGD 296
Query: 391 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
SS + + GRP P TAQ+A QQ NL A + ++ L F F N G + LG+ +A
Sbjct: 297 SSLMFNPEGRPYPPTAQIAMQQGVLCAKNLAATLRNKELNKFVFSNKGTVASLGKGEAV 355
>gi|431798495|ref|YP_007225399.1| NADH dehydrogenase, FAD-containing subunit [Echinicola vietnamensis
DSM 17526]
gi|430789260|gb|AGA79389.1| NADH dehydrogenase, FAD-containing subunit [Echinicola vietnamensis
DSM 17526]
Length = 451
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/436 (23%), Positives = 171/436 (39%), Gaps = 57/436 (13%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD K P + I+GGGF GL +L+ K+ QV+L+D++ F+P+LY++ + +
Sbjct: 24 PDTKLPSVVIVGGGFAGLALVEKLKH------KEVQVVLLDKNNFHQFQPLLYQVATSAL 77
Query: 135 DAWEIAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ I F + FF+ V + P + T+L G V YD
Sbjct: 78 EPDSIVFPFRKQINGYKNVFFRLAEVVEIQPDSN-------------TILTNKG-SVSYD 123
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIV----Q 249
+LVL+ G + AE + + D+ + + + LE+ I +
Sbjct: 124 YLVLATGTTTNFFGMDSVAENSLGMKDIRDSLNIRHMM-------LQNLEQAAITCDNKE 176
Query: 250 AINVETTICPTGTPGNREAALKVLSARKVQLVLGY--------FVRCIRRVGEFEASVKQ 301
+ + G P E A + K L Y + I + E +++
Sbjct: 177 RDALTNFVIVGGGPAGVEMAGALAEFCKYILPKDYPEYPSSIMNIYLIEAIDELLSTMSD 236
Query: 302 PESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL-----WTVGSKPLLPHVEPP 356
S D N + E G E +L WT G K P
Sbjct: 237 KASSKTLKYLEDLNVKVLLNEAVSNYDGKEVTTISGKTILAKNLIWTAGVKGQFP----- 291
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP--LPATAQVAFQQAD 414
N + + + + +TD L V+G+ IFA+GD +AL S RP P AQ A QQ
Sbjct: 292 -NGIDEKHIVRGNRIKTDANLKVEGYENIFAIGDIAALI-SEERPKGHPQVAQAAIQQGK 349
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+ G ++ IN++P PF +++ G + +G+ A + G + +L
Sbjct: 350 YLGNSILNLINNKPTQPFEYKDKGSLATVGKRKAVAD---LGKFKFAGYFAWLLWSVVHL 406
Query: 475 IRLPTDEHRLKVGVSW 490
+ + +RL VG +W
Sbjct: 407 MSISGFRNRLMVGFNW 422
>gi|172058320|ref|YP_001814780.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Exiguobacterium sibiricum 255-15]
gi|171990841|gb|ACB61763.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Exiguobacterium sibiricum 255-15]
Length = 403
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 164/396 (41%), Gaps = 64/396 (16%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ILG G+GGL TA+ L+ + D + + L+++ + L+E +G + A +
Sbjct: 4 PNIVILGAGYGGLITAVNLQKKLGVD--QANITLINKHDYHYQTTWLHEPAAGTMSAEQA 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
D++ + V+ K V+ + + + TV L G V YD++V++L
Sbjct: 62 RIYINDVINPSRVKLVKGIVEKVDTASN-------------TVKLVDGGTVPYDYVVVAL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
G P+ + G E A S+L RK+ E +F + G + +
Sbjct: 109 GGVPETFGIKGLKENALTISSLNSV----RKIKEHIDYSFAEYKTTGSTNRSLLTIVVGG 164
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVKQPESGAIPNIAAD--KNS 316
G G + L R +L Y + R + RV EA+ +P AD +
Sbjct: 165 AGFTGIE--FMGELVNRIPELCKQYDIPRELVRVVNIEAA-----PTVLPGFDADLVNYA 217
Query: 317 DKY-------------ILELQPA------IKGLESQIFEADLVLWT--VGSKPLLP--HV 353
K+ I E P ++G ++ EA+ ++WT V P++
Sbjct: 218 HKWLERQGIEFKLGNGIKECGPGSVTFGPLQGDTTETIEANTIIWTGGVSGNPVVAASGF 277
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQ 412
E NR+ E L V GH +F +GD SA+ D +S RP P TAQ+A QQ
Sbjct: 278 EAMRNRV-----------VVQEDLRVPGHENVFMIGDCSAVMDPASNRPYPPTAQIATQQ 326
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
A N+ A I R F ++N G + LG D
Sbjct: 327 AHKVAENIAALIGGRQTSTFTYENKGTVASLGHKDG 362
>gi|350267404|ref|YP_004878711.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349600291|gb|AEP88079.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 404
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 165/388 (42%), Gaps = 46/388 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 3 KPKIVILGAGYGGLMTVTRLTKFVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 61 CRYQIKDVINQSRVNFVQDTVKAIKTDEK-------------KVVLANGEL-QYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LGA P+ + G E+AFP + + + R+ R+ EL+ + EK + TI
Sbjct: 107 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYHTEAEKRPDR-----LTIV 160
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVK-----QPESGAIPNIAA 312
G L L+AR +L Y V R + R+ EA+ PE
Sbjct: 161 VGGAGFTGIEFLGELAARVPELCKEYDVDRGLVRIICVEAAPTVLPGFDPELVDYAVHYL 220
Query: 313 DKNSDKY-----ILELQP-----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
++N ++ + E P K E + ++ V+W G + P VE
Sbjct: 221 EENGVEFKIGTAVQECTPEGVRVGKKDEEPEQIKSQTVVWAAGVRG-HPIVEEAGFE--- 276
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLW 421
N RG+ + + L GH +F LGDSS + + + RP P TAQ+A QQ NL
Sbjct: 277 ---NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNEDTERPYPPTAQIAMQQGITVAKNLG 333
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAA 449
I L F+ G + LG ++A
Sbjct: 334 RLIKGGELEEFKPDIKGTVASLGEHNAV 361
>gi|407477989|ref|YP_006791866.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Exiguobacterium antarcticum B7]
gi|407062068|gb|AFS71258.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Exiguobacterium antarcticum B7]
Length = 403
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 164/396 (41%), Gaps = 64/396 (16%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ILG G+GGL TA+ L+ + D + + L+++ + L+E +G + A +
Sbjct: 4 PNIVILGAGYGGLITAVNLQKKLGVD--QANITLINKHDYHYQTTWLHEPAAGTMSAEQA 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
D++ + V+ K V+ + + + TV L G V YD++V++L
Sbjct: 62 RIYINDVINPSRVKLVKGIVEKVDTASN-------------TVKLVDGGTVPYDYVVVAL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
G P+ + G E A S+L RK+ E +F + G + +
Sbjct: 109 GGVPETFGIKGLKENALTISSLNSV----RKIKEHIDYSFAEYKTTGSTNRSLLTIVVGG 164
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVKQPESGAIPNIAAD--KNS 316
G G + L R +L Y + R + RV EA+ +P AD +
Sbjct: 165 AGFTGIE--FMGELVNRIPELCKQYDIPRELVRVVNIEAA-----PTVLPGFDADLVNYA 217
Query: 317 DKY-------------ILELQPA------IKGLESQIFEADLVLWT--VGSKPLLP--HV 353
K+ I E P ++G ++ EA+ ++WT V P++
Sbjct: 218 HKWLERQGIEFKLGNGIKECAPGSVTFGPLQGESTETIEANTIIWTGGVSGNPVVAASGF 277
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQ 412
E NR+ E L V GH +F +GD SA+ D +S RP P TAQ+A QQ
Sbjct: 278 EAMRNRV-----------VVAEDLRVPGHENVFMIGDCSAVMDPNSNRPYPPTAQIATQQ 326
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
A N+ A I R F ++N G + LG D
Sbjct: 327 AHKVAENISALIGGRQTSTFTYENKGTVASLGHKDG 362
>gi|311031743|ref|ZP_07709833.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Bacillus sp. m3-13]
Length = 405
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/413 (24%), Positives = 166/413 (40%), Gaps = 95/413 (23%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP I ILG G+GGL TA+RL+ ++ ++ + LV++++ L+E +G + A
Sbjct: 2 KKPSIVILGAGYGGLVTAVRLQKMIGVNE--ADITLVNKNDYHYESTWLHEASAGTLPAD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +D++ + + F D V G+N TV L G + YD+LV+
Sbjct: 60 RTRYKISDVIDRSKIHFLHDTVT--------GIN-----REAKTVALTKGGEIAYDYLVV 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERRN----------- 238
LG E + + G E AF + L A ++ + +E RR+
Sbjct: 107 GLGYEAETFGIKGLKEHAFTIANLNVARKIREHIEYQFATYNTEAHRRDDRLTIVVGGAG 166
Query: 239 --------------------FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKV 278
F+ +EK + + T+ P P E A+ L + V
Sbjct: 167 FTGIEFLGELVNRVPELCQEFDIPKEKVRIVCVEAAPTVLPGFDPELVEYAVNTLERKGV 226
Query: 279 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 338
+ +G ++ EA+ E G I +A D+ E + +A
Sbjct: 227 EFKIGTAIK--------EAT----EEGII--VAKDE----------------EVEEIKAG 256
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLPL-NARGQAETDETLCVKGHPRIFALGDSS-ALRD 396
V+W G + N+ + D N RG+ + D L GH +F +GD S + +
Sbjct: 257 TVVWAAGVR--------GNHLVEDSGFENMRGRVKVDPYLRAPGHEDVFIVGDCSLIINE 308
Query: 397 SSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 448
RP P TAQ+A QQ + NL + + L F G + LG +DA
Sbjct: 309 EINRPYPPTAQIAMQQGEVCAKNLAVLVRGQGELQTFTPDLKGTVCSLGEDDA 361
>gi|384176806|ref|YP_005558191.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349596030|gb|AEP92217.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 404
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 104/387 (26%), Positives = 165/387 (42%), Gaps = 46/387 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 3 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 61 CRYQIKDVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LGA P+ + G E+AFP + + + R+ R+ EL+ + EK + TI
Sbjct: 107 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDR-----LTIV 160
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVK-----QPESGAIPNIAA 312
G L L+AR +L Y V R + R+ EA+ PE
Sbjct: 161 VGGAGFTGIEFLGELAARVSELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYL 220
Query: 313 DKNSDKY-----ILELQP-----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
++N ++ + E P K E + ++ V+W G + P VE
Sbjct: 221 EENGVEFKIGTAVQECTPEGVRVGKKDEEPEQIKSQTVVWAAGVRG-HPIVEEAGFE--- 276
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLW 421
N RG+ + + L GH +F LGDSS + + + RP P TAQ+A QQ NL
Sbjct: 277 ---NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNEDTERPYPPTAQIAMQQGITVAKNLG 333
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDA 448
I L F+ G + LG ++A
Sbjct: 334 RLIKGGELEEFKPDIKGTVASLGEHNA 360
>gi|116626613|ref|YP_828769.1| NADH dehydrogenase [Candidatus Solibacter usitatus Ellin6076]
gi|116229775|gb|ABJ88484.1| NADH dehydrogenase [Candidatus Solibacter usitatus Ellin6076]
Length = 446
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 112/438 (25%), Positives = 176/438 (40%), Gaps = 61/438 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
D K + I+GGGF GL A +L V L+D++ F+P+LY+L + EV
Sbjct: 4 DGSKKHVVIVGGGFAGLSCARKLAK-----SDGVHVTLIDRNNFHQFQPLLYQLATSEVG 58
Query: 136 AWEIAPRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
++A L + V V + P+ TV G E D+
Sbjct: 59 TGDVATSLRQALHGHPNVDVKIGEVTAVNPATR-------------TVSTRQGESYEGDF 105
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFE-RLEEKGIVQAIN 252
LVL+ G++ GAAE AFP LE+A R+ R L E + + +L E+G + +
Sbjct: 106 LVLAAGSQANFFGTSGAAENAFPLYGLEEAQRLRSRILKVFEDADRDPKLLERGALNFVI 165
Query: 253 VETTICPTGTP----------GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQP 302
V PTGT G L+ +K Q+ L + A+ +
Sbjct: 166 VGG--GPTGTEMAGALADMIRGGLADEYPDLAVKKAQVYL------VDHGASLLAAFSKK 217
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGLE-SQIFEAD-------LVLWTVG--SKPLLPH 352
I K D + L A+K + + +D V+W G + PL +
Sbjct: 218 AHAYAARILQRKGVD---IRLGVAVKEVAPDHVVLSDGTSIPTRTVVWAGGLMASPLAAN 274
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
LP G+ E L V G P ++ LGD + + + G+ +P A VA Q
Sbjct: 275 A--------GLPRGHGGRIEVLPDLTVAGFPGVYVLGDFANIPSAKGQFMPQLASVAQQC 326
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
++ N+ I F + + G M ++GR DAAV+ + LDGPI +A
Sbjct: 327 GEWTAKNILTEIAGEERTAFHYHDKGIMAMIGR-DAAVAEIGKKRHELDGPIAFAAWLGV 385
Query: 473 YLIRLPTDEHRLKVGVSW 490
+ + + R++ V W
Sbjct: 386 HALLMSGVRQRIEAFVDW 403
>gi|386361687|ref|YP_006059931.1| NADH dehydrogenase, FAD-containing subunit [Thermus thermophilus
JL-18]
gi|383510714|gb|AFH40145.1| NADH dehydrogenase, FAD-containing subunit [Thermus thermophilus
JL-18]
Length = 394
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 148/358 (41%), Gaps = 71/358 (19%)
Query: 112 LLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN 171
LLVD +F+P+LY++ +G ++ IA L+ V + R L
Sbjct: 32 LLVDARNHHLFQPLLYQVATGFLEGPAIAYPLRALVRRGRVLLARARAVDL--------- 82
Query: 172 GPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRK 230
G +LLE G ++ Y LV++ G+ P VPG E A TL A RV R
Sbjct: 83 ------EGRRLLLEDGDVLPYRHLVVATGSLPSDLGVPGVGERALLLKTLGQALRVRHRL 136
Query: 231 LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI- 289
L LER E G P + + ++ L F+R
Sbjct: 137 LMALERAARE--------------------GAPLSLVVVGGGPTGVELSGALAEFLRYAL 176
Query: 290 -RRVGEF-EASVKQPESGA--IPNI--AADKNSDKYILELQPAIKGLESQIFE------- 336
R E EA V E+G +P A + +++ + L + G + E
Sbjct: 177 PRDFPEIPEARVVLLEAGPRLLPAFRPALSRYAERALAHLGVEVLGAQVAAVEERGVRLA 236
Query: 337 ------ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 390
DLVLW VG + N L LP +ARG+ TD L + GHP ++ +GD
Sbjct: 237 SGEGLVGDLVLWAVGVR---------GNPLPGLPADARGRVPTDPYLRLPGHPEVYVVGD 287
Query: 391 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ L P A VA QQ +A NL A+ + LPFR+++ G++ ++GRN A
Sbjct: 288 LNGL------GFPQLAPVALQQGAWAAGNLLRALRGQDPLPFRYRDRGQLAVIGRNRA 339
>gi|443634285|ref|ZP_21118460.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443345961|gb|ELS60023.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 419
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 165/388 (42%), Gaps = 46/388 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 18 KPKIVILGAGYGGLMTVTRLTKFVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 76 CRYQIKDVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 121
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LGA P+ + G E+AFP + + + R+ R+ EL+ + EK + TI
Sbjct: 122 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDR-----LTIV 175
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVK-----QPESGAIPNIAA 312
G L L+AR +L Y V R + R+ EA+ PE
Sbjct: 176 VGGAGFTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYL 235
Query: 313 DKNSDKY-----ILELQP-----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
++N ++ + E P K E + ++ V+W G + P VE
Sbjct: 236 EENGIEFKIGTAVQECTPEGVRVGKKDEEPEQIKSQTVVWAAGVRG-HPIVEEAGFE--- 291
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLW 421
N RG+ + + L GH +F LGDSS + + + RP P TAQ+A QQ NL
Sbjct: 292 ---NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNEDTERPYPPTAQIAMQQGITVAKNLG 348
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAA 449
I L F+ G + LG ++A
Sbjct: 349 RLIKGGELEEFKPDIKGTVASLGEHNAV 376
>gi|319647617|ref|ZP_08001835.1| YumB protein [Bacillus sp. BT1B_CT2]
gi|317389958|gb|EFV70767.1| YumB protein [Bacillus sp. BT1B_CT2]
Length = 408
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 162/390 (41%), Gaps = 53/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP++ +LG G+GGL T RL + ++ + LV++ ++E +G +
Sbjct: 8 KPKVVVLGAGYGGLMTVTRLVKKIGINE--ADITLVNKHNYHYETTWMHEASAGTLHHDR 65
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + G V+LE+G + YD+LV++
Sbjct: 66 CRYQIKDVINTSRVNFVQDTVKKIDKE-------------GKKVVLETGEL-SYDYLVVA 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF--------ERLEEKGIVQA 250
LG+ P+ + G E AF S + + R+L E F +R E IV
Sbjct: 112 LGSVPETFGISGLKEHAFSISNINSS----RQLREHIEYQFATYNTEAEKRPERLTIVVG 167
Query: 251 INVETTICPTGTPGNREAAL---KVLSARKVQLVLGYFVRCIRRVGE----FEASVKQPE 303
T I G NR L + ++V+L+ C+ FE +
Sbjct: 168 GAGFTGIEFLGEMANRIPELCREYDIDRQQVRLI------CVEAAPSVLPGFEPELVDYA 221
Query: 304 SGAIPNIAADKNSDKYILELQP--AIKGLESQIFE--ADLVLWTVGSKPLLPHVEPPNNR 359
+ + + E P I G + Q E A V+W G + P +E
Sbjct: 222 VNYLEGKGVEFKIGTAVKECTPDGIIVGKDDQTEEIKAGTVVWAAGVRGN-PIIEESGFE 280
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQADFAGW 418
N RG+ + L V+GH IF +GD S + + + RP P TAQ++ QQ +
Sbjct: 281 ------NMRGRVKVKPDLRVEGHDDIFVIGDCSLIINEETERPYPPTAQISMQQGETCAN 334
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
NL A I+ + F F N G + LG +DA
Sbjct: 335 NLAALIHGKETETFSFDNKGSVASLGEHDA 364
>gi|296330731|ref|ZP_06873207.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675796|ref|YP_003867468.1| NAD-disulfide oxidoreductase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296152045|gb|EFG92918.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414040|gb|ADM39159.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 419
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 104/387 (26%), Positives = 165/387 (42%), Gaps = 46/387 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 18 KPKIVILGAGYGGLMTVTRLTKFVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 76 CRYQIKDVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 121
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LGA P+ + G E+AFP + + + R+ R+ EL+ + EK + TI
Sbjct: 122 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYHTEAEKRPDR-----LTIV 175
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVK-----QPESGAIPNIAA 312
G L L+AR +L Y V R + R+ EA+ PE
Sbjct: 176 VGGAGFTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYL 235
Query: 313 DKNSDKY-----ILELQP-----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
++N ++ + E P K E + ++ V+W G + P VE
Sbjct: 236 EENGVEFKIGTAVQECTPEGVRVGKKDEEPEQIKSQTVVWAAGVRG-HPIVEEAGFE--- 291
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLW 421
N RG+ + + L GH +F LGDSS + + + RP P TAQ+A QQ NL
Sbjct: 292 ---NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNEDTERPYPPTAQIAMQQGITVAKNLG 348
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDA 448
I L F+ G + LG ++A
Sbjct: 349 RLIKGGELEQFKPDIKGTVASLGEHNA 375
>gi|16080263|ref|NP_391090.1| NAD-disulfide oxidoreductase [Bacillus subtilis subsp. subtilis
str. 168]
gi|402777367|ref|YP_006631311.1| NAD-disulfide oxidoreductase [Bacillus subtilis QB928]
gi|430757814|ref|YP_007208285.1| hypothetical protein A7A1_2322 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|81814667|sp|O05267.1|YUMB_BACSU RecName: Full=NADH dehydrogenase-like protein YumB
gi|1934829|emb|CAB07953.1| NADH dehydrogenase [Bacillus subtilis subsp. subtilis str. 168]
gi|2635707|emb|CAB15200.1| putative NAD-disulfide oxidoreductase [Bacillus subtilis subsp.
subtilis str. 168]
gi|402482546|gb|AFQ59055.1| Putative NAD-disulfide oxidoreductase [Bacillus subtilis QB928]
gi|407966053|dbj|BAM59292.1| NAD-disulfide oxidoreductase [Bacillus subtilis BEST7003]
gi|430022334|gb|AGA22940.1| Hypothetical protein YumB [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 406
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 104/387 (26%), Positives = 165/387 (42%), Gaps = 46/387 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 5 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 63 CRYQIKDVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LGA P+ + G E+AFP + + + R+ R+ EL+ + EK + TI
Sbjct: 109 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDR-----LTIV 162
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVK-----QPESGAIPNIAA 312
G L L+AR +L Y V R + R+ EA+ PE
Sbjct: 163 VGGAGFTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYL 222
Query: 313 DKNSDKY-----ILELQP-----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
++N ++ + E P K E + ++ V+W G + P VE
Sbjct: 223 EENGVEFKIGTAVQECTPEGVRVGKKDEEPEQIKSQTVVWAAGVRG-HPIVEEAGFE--- 278
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLW 421
N RG+ + + L GH +F LGDSS + + + RP P TAQ+A QQ NL
Sbjct: 279 ---NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNEDTERPYPPTAQIAMQQGITVAKNLG 335
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDA 448
I L F+ G + LG ++A
Sbjct: 336 RLIKGGELEEFKPDIKGTVASLGEHNA 362
>gi|220924342|ref|YP_002499644.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Methylobacterium nodulans ORS 2060]
gi|219948949|gb|ACL59341.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Methylobacterium nodulans ORS 2060]
Length = 437
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/383 (23%), Positives = 159/383 (41%), Gaps = 31/383 (8%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ RI ++GGG GL A +L + K+ ++ L+D+S ++KP+L+E+ +G +D
Sbjct: 4 RHRIVVVGGGAAGLELATKLGDR-YGKRKQAEITLIDRSRTHIWKPLLHEVAAGSMD--- 59
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVL-LESGLIVEYDWLVL 197
+ D L + F+ R+ + D +A +H + + YD LV+
Sbjct: 60 VGYHAVDYLHHAHAHHFRYRIGEMTGLDRDRRVVKLAASHDAEGREVTPAREIPYDTLVI 119
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
++G+ PG E+A T + A R R+L R ++G V+ + +
Sbjct: 120 AVGSTSNDFGTPGVKEYAIALDTPDQAERFHRRLVNAMIRAHV---QEGPVRPGQLHVAV 176
Query: 258 CPTGTPGNREAALKVLSARKV------------QLVLGYFVRCIRRVGEFEASVKQPESG 305
G G A + R V L L R + + Q
Sbjct: 177 IGAGATGTELVAELHRTTRHVAATGLDRIDPDKDLKLTLIEAADRILPAVPERLSQDVMA 236
Query: 306 AIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHD 362
+ I + + + E++P ++ + +++LV+W G V P+ L
Sbjct: 237 LLAGIGVEVRTRARVTEVRPDGVQLADGSFIQSELVVWAAG-------VRAPDVLRDLGG 289
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGWNLW 421
L Q TL IFA+GD + L D+ + +P+P AQ A QQA +
Sbjct: 290 LETTRNNQLVVTPTLQTTRDENIFAIGDCAHLIDAATQKPIPPRAQAAHQQATHLLKQMP 349
Query: 422 AAINDRPLLPFRFQNLGEMMILG 444
+ +PL+PFR+++ G ++ LG
Sbjct: 350 KRLAGQPLVPFRYRDFGSLVSLG 372
>gi|163119630|ref|YP_080492.2| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|404490584|ref|YP_006714690.1| NADH dehydrogenase YumB [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52349589|gb|AAU42223.1| putative NADH dehydrogenase YumB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|145903140|gb|AAU24854.2| FAD-dependent pyridine nucleotide-disulphide oxidoreductase YumB
[Bacillus licheniformis DSM 13 = ATCC 14580]
Length = 403
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 162/390 (41%), Gaps = 53/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP++ +LG G+GGL T RL + ++ + LV++ ++E +G +
Sbjct: 3 KPKVVVLGAGYGGLMTVTRLVKKIGINE--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + G V+LE+G + YD+LV++
Sbjct: 61 CRYQIKDVINTSRVNFVQDTVKKIDKE-------------GKKVVLETGEL-SYDYLVVA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF--------ERLEEKGIVQA 250
LG+ P+ + G E AF S + + R+L E F +R E IV
Sbjct: 107 LGSVPETFGISGLKEHAFSISNINSS----RQLREHIEYQFATYNTEAEKRPERLTIVVG 162
Query: 251 INVETTICPTGTPGNREAAL---KVLSARKVQLVLGYFVRCIRRVGE----FEASVKQPE 303
T I G NR L + ++V+L+ C+ FE +
Sbjct: 163 GAGFTGIEFLGEMANRIPELCREYDIDRQQVRLI------CVEAAPSVLPGFEPELVDYA 216
Query: 304 SGAIPNIAADKNSDKYILELQP--AIKGLESQIFE--ADLVLWTVGSKPLLPHVEPPNNR 359
+ + + E P I G + Q E A V+W G + P +E
Sbjct: 217 VNYLEGKGVEFKIGTAVKECTPDGIIVGKDDQTEEIKAGTVVWAAGVRGN-PIIEESGFE 275
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQADFAGW 418
N RG+ + L V+GH IF +GD S + + + RP P TAQ++ QQ +
Sbjct: 276 ------NMRGRVKVKPDLRVEGHDDIFVIGDCSLIINEETERPYPPTAQISMQQGETCAN 329
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
NL A I+ + F F N G + LG +DA
Sbjct: 330 NLAALIHGKETETFSFDNKGSVASLGEHDA 359
>gi|452913164|ref|ZP_21961792.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Bacillus subtilis MB73/2]
gi|452118192|gb|EME08586.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Bacillus subtilis MB73/2]
Length = 404
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 165/388 (42%), Gaps = 46/388 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 3 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 61 CRYQIKDVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LGA P+ + G E+AFP + + + R+ R+ EL+ + EK + TI
Sbjct: 107 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDR-----LTIV 160
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVK-----QPESGAIPNIAA 312
G L L+AR +L Y V R + R+ EA+ PE
Sbjct: 161 VGGAGFTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYL 220
Query: 313 DKNSDKY-----ILELQP-----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
++N ++ + E P K E + ++ V+W G + P VE
Sbjct: 221 EENGVEFKIGTAVQECTPEGVRVGKKDEEPEQIKSQTVVWAAGVRG-HPIVEEAGFE--- 276
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLW 421
N RG+ + + L GH +F LGDSS + + + RP P TAQ+A QQ NL
Sbjct: 277 ---NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNEDTERPYPPTAQIAMQQGITVAKNLG 333
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAA 449
I L F+ G + LG ++A
Sbjct: 334 RLIKGGELEEFKPDIKGTVASLGEHNAV 361
>gi|423683696|ref|ZP_17658535.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Bacillus licheniformis WX-02]
gi|383440470|gb|EID48245.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Bacillus licheniformis WX-02]
Length = 406
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 162/390 (41%), Gaps = 53/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP++ +LG G+GGL T RL + ++ + LV++ ++E +G +
Sbjct: 6 KPKVVVLGAGYGGLMTVTRLVKKIGINE--ADITLVNKHNYHYETTWMHEASAGTLHHDR 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + G V+LE+G + YD+LV++
Sbjct: 64 CRYQIKDVINTSRVNFVQDTVKKIDKE-------------GKKVVLETGEL-SYDYLVVA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF--------ERLEEKGIVQA 250
LG+ P+ + G E AF S + + R+L E F +R E IV
Sbjct: 110 LGSVPETFGISGLKEHAFSISNINSS----RQLREHIEYQFATYNTEAEKRPERLTIVVG 165
Query: 251 INVETTICPTGTPGNREAAL---KVLSARKVQLVLGYFVRCIRRVGE----FEASVKQPE 303
T I G NR L + ++V+L+ C+ FE +
Sbjct: 166 GAGFTGIEFLGEMANRIPELCREYDIDRQQVRLI------CVEAAPSVLPGFEPELVDYA 219
Query: 304 SGAIPNIAADKNSDKYILELQP--AIKGLESQIFE--ADLVLWTVGSKPLLPHVEPPNNR 359
+ + + E P I G + Q E A V+W G + P +E
Sbjct: 220 VNYLEGKGVEFKIGTAVKECTPDGIIVGKDDQTEEIKAGTVVWAAGVRGN-PIIEESGFE 278
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQADFAGW 418
N RG+ + L V+GH IF +GD S + + + RP P TAQ++ QQ +
Sbjct: 279 ------NMRGRVKVKPDLRVEGHDDIFVIGDCSLIINEETERPYPPTAQISMQQGETCAN 332
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
NL A I+ + F F N G + LG +DA
Sbjct: 333 NLAALIHGKETETFSFDNKGSVASLGEHDA 362
>gi|27376162|ref|NP_767691.1| NADH dehydrogenase [Bradyrhizobium japonicum USDA 110]
gi|27349301|dbj|BAC46316.1| NADH dehydrogenase [Bradyrhizobium japonicum USDA 110]
Length = 433
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 106/442 (23%), Positives = 174/442 (39%), Gaps = 62/442 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL RL + L+D+ +F+P+LY++ + + EIA
Sbjct: 19 RVVIVGAGFGGLEATYRLAG------TPVDITLIDRRNHHLFQPLLYQVATASLATSEIA 72
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHL-GVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
L+ +DR ++ + GV+ C VL++ G V YD LVL+
Sbjct: 73 WPVRHLM--------RDRREVTTLFATVSGVDATRRC-----VLIDDGSEVPYDTLVLAT 119
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTIC 258
GA +FA TLEDA + R L ER E K + V
Sbjct: 120 GARHAYFGHDEWEQFAPGLKTLEDATTLRRHILVAFERAERETDPAKRAARLTFVIVGAG 179
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 318
PTG L+ ++ R + +A V E+G P + A +D+
Sbjct: 180 PTGVE---------LAGTIAEMAHHTLPEDFRNIDTTKARVVLIEAG--PRVLAG-FADE 227
Query: 319 YILELQPAIKGLESQI--------------------FEADLVLWTVGSKPLLPHVEPPNN 358
Q +++ + ++ +A +W G + P
Sbjct: 228 LSAYAQASLEKIGVEVVLGQPVTEIDRDGVVYGGTRLDAKTKIWAAGVRA------SPAA 281
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
+P + G+ + + L + GHP IFA+GD+ + G+P+P A A QQ
Sbjct: 282 EWLGVPADRAGRVQVEADLTIPGHPEIFAIGDTVTISAWEGKPVPGIAPAAKQQGRHVAE 341
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
+ A + FR+++ G + +G+ A + ++ L G I +A++ L
Sbjct: 342 TVKARLRGETKGAFRYKHSGSLAQIGKRLAVIDFGRIK---LRGTIAWWIWGIAHIYFLI 398
Query: 479 TDEHRLKVGVSWLTKSAIDSVA 500
HRL V +SWL A D A
Sbjct: 399 GLRHRLSVALSWLWIYARDQRA 420
>gi|421474513|ref|ZP_15922545.1| NADH dehydrogenase [Burkholderia multivorans CF2]
gi|400232027|gb|EJO61675.1| NADH dehydrogenase [Burkholderia multivorans CF2]
Length = 430
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 156/385 (40%), Gaps = 38/385 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGKSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F G + ++ L + G + G VL L EYD L+L+LG
Sbjct: 65 VIFVAHACEHGYTYQPGELQGLDRTRRRVRLGEIRSQDGAVVLEAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ VPG E + + A + L R+ R E + I
Sbjct: 123 SQANDFGVPGVREHCYFIDSQRQAEAFNEALRMRVFRSVARDEA--------LRVAIVGA 174
Query: 261 GTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
G G AA L+V A + +L L R + F + + I
Sbjct: 175 GATGVELAAELSRLLEVAQAYGDATVRERLQLTLLESGPRILAAFPPKISASAQQQLERI 234
Query: 311 AADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPP-----NNRLHDLP 364
+ + P + EADL++W G K P NR + +
Sbjct: 235 GFRVLTSTRVTSAAPNGFHYGDDSFAEADLMVWAAGVKA--PEFMQALGGLDTNRANQIV 292
Query: 365 LNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
+ QA TDE RIFA+GD +S L D RPLP TAQVA QQA+ +L A
Sbjct: 293 VGPTLQATTDE--------RIFAIGDCASLLPDGQERPLPPTAQVATQQAEHLAKHLPAW 344
Query: 424 INDRPLLPFRFQNLGEMMILGRNDA 448
++ +P+ F F + G ++ L DA
Sbjct: 345 LDGKPMPAFAFHDFGALVSLSDYDA 369
>gi|398308146|ref|ZP_10511620.1| NAD-disulfide oxidoreductase [Bacillus mojavensis RO-H-1]
Length = 404
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 105/387 (27%), Positives = 164/387 (42%), Gaps = 46/387 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 3 KPKIVILGAGYGGLMTVTRLTKHVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 61 CRYQIKDVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LGA P+ + G EFAFP + + + RV R+ EL+ + EK + TI
Sbjct: 107 LGAVPETFGIKGLKEFAFPIANI-NTSRVLREHIELQFATYNIEAEKRPDR-----LTIV 160
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVK-----QPE--SGAIPNI 310
G L L+AR +L Y V R + R+ EA+ PE A+ +
Sbjct: 161 VGGAGFTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYL 220
Query: 311 AADKNSDKYILELQPAI--------KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ K +Q K E + ++ V+W G + P VE
Sbjct: 221 EENGVEFKIGTAVQECTAEGVTVGKKDEEPEQIKSQTVVWAAGVRG-HPIVEEAGFE--- 276
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLW 421
N RG+ + + L GH +F LGDSS + + + RP P TAQ+A QQ N+
Sbjct: 277 ---NMRGRVKVNPDLRAPGHDNVFILGDSSLFINEDTDRPYPPTAQIAMQQGTTVAKNIA 333
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDA 448
I L F+ G + LG ++A
Sbjct: 334 KLIKGGELEEFKPDIKGTVASLGEHNA 360
>gi|331694770|ref|YP_004331009.1| NADH dehydrogenase (ubiquinone) [Pseudonocardia dioxanivorans
CB1190]
gi|326949459|gb|AEA23156.1| NADH dehydrogenase (ubiquinone) [Pseudonocardia dioxanivorans
CB1190]
Length = 491
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 107/434 (24%), Positives = 176/434 (40%), Gaps = 51/434 (11%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ RI I+GGG+ G+YTALRL+ + + + V ++D ++P L E +G ++
Sbjct: 33 RTTRIVIVGGGYVGMYTALRLQKKLRRGEA--DVTVIDPQSHMTYQPFLPEAAAGSIEPR 90
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +L G RV + + V +A + T YD LV+
Sbjct: 91 HVVVPLRRVL--RGCHVVTGRVTSIS-HEKREVVAELAAGNEATF--------GYDVLVV 139
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+ G+ + VPG AE F T+ +A L RL+ + +
Sbjct: 140 APGSVARTLPVPGLAEHGIAFKTVGEAI-------YLRNHVLSRLDAASTTTDPRLRRKL 192
Query: 258 CPTGTPGNREAALKVLS--ARKVQLVLGYFVRC----IRRVGEFEASVKQPESG-AIPNI 310
G A ++ L+ A + Y+ IR V A+ PE G +
Sbjct: 193 LTFLVVGGGYAGIEALAELADMARHASKYYENVNREDIRWVLVEAANRIMPEVGPKLGRY 252
Query: 311 AADKNSDKYI-LELQPAIKGL--------ESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
++ D I + L+ + + + Q F+ D ++WT G KP P
Sbjct: 253 TVERLLDADIEVNLETRVVSMVDGHVELDDGQSFDTDTIIWTAGVKP------NPMLENT 306
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS-----GRPLPATAQVAFQQADFA 416
DLP +ARG+ + L V G P +F+ GD +++ D S R P +AQ A +QA
Sbjct: 307 DLPRDARGRVDCTAMLQVVGMPDVFSAGDCASVPDLSKDDPEARTSP-SAQHAVRQAKVL 365
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
G NL A I R L +R G + LG + G+ L G + + ++ R
Sbjct: 366 GDNLVAHIRGRKLSEYRHSYAGSVASLGLYKGVAE---IYGIKLRGIVAWFMHRTYHVSR 422
Query: 477 LPTDEHRLKVGVSW 490
+PT R+++ W
Sbjct: 423 MPTWNRRVRIVFDW 436
>gi|375086419|ref|ZP_09732830.1| hypothetical protein HMPREF9454_01441 [Megamonas funiformis YIT
11815]
gi|291533555|emb|CBL06668.1| NADH dehydrogenase, FAD-containing subunit [Megamonas hypermegale
ART12/1]
gi|374565194|gb|EHR36466.1| hypothetical protein HMPREF9454_01441 [Megamonas funiformis YIT
11815]
Length = 421
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 171/404 (42%), Gaps = 76/404 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+P + ILG GFGG+ A L DK V +VD+ +F+P+LY++ + + E
Sbjct: 9 RPHVVILGAGFGGIKAAKLLA------DKDVDVTIVDKHNYHLFQPLLYQVSTSILSEDE 62
Query: 139 IA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I+ P A N + FF P++ + + +HG + YD+L++
Sbjct: 63 ISYPIRAFFQKNENIDFFMAEATGFDPANKI-----VKTSHGD---------ISYDYLII 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERL----EEKGIVQAINV 253
+ GA + E ++P TL ++ + L R FER +K + +A+
Sbjct: 109 ATGATTNYFGMKSVEEHSYPMKTLRESTLLRNHLI----RTFERASRVENDKDLKKAL-- 162
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR------VGEFEASVKQPESGAI 307
T + G P E A + +LV +C+++ + + + + + +
Sbjct: 163 MTIMIVGGGPTGVEEAGAI-----SELVY----KCMKKDYHNLNMNDVDIKLIEATDKLL 213
Query: 308 PNI-AADKNSDKYILELQPAIKGLESQIFEAD------------------LVLWTVGSK- 347
P + A +N+ +L + L +Q+ + D V+W G K
Sbjct: 214 PMMPEALRNNTVDVLRGKKVDVRLNTQVRDYDGEYITLKCGEKEEKIRTRTVIWAAGVKA 273
Query: 348 -PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA 406
P++ + +R G+ ++T VKG P I+A+GDS+ + GRPLP A
Sbjct: 274 QPVVATLGAEVDRA--------GRVIVEKTTQVKGFPDIYAIGDSAHF-EQDGRPLPTIA 324
Query: 407 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
A++ A+ N+ AI F +++LG M +G DA +
Sbjct: 325 PAAYEAAETTVKNIMHAIKGEEQETFVYKDLGSMATIGAGDAVM 368
>gi|444916942|ref|ZP_21237050.1| NADH dehydrogenase [Cystobacter fuscus DSM 2262]
gi|444711588|gb|ELW52527.1| NADH dehydrogenase [Cystobacter fuscus DSM 2262]
Length = 458
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 119/442 (26%), Positives = 185/442 (41%), Gaps = 76/442 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVD 135
K + + I+G GFGGL A +L+ K P +V +VD+ +F+P+LY++ + +
Sbjct: 11 KDQHHVVIVGAGFGGLQAARKLQ-------KAPVKVTVVDRYNHHLFQPLLYQVATAVLS 63
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+I+ +L Q LL + + V + GG V YD L
Sbjct: 64 PADISAPIRSILRGRNTQV------LLAEARSVDVARKVLVCDGGEV--------PYDTL 109
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVE 254
VL+ GA P A A TL DA + +R L LE E E+ QA +
Sbjct: 110 VLATGATHSYFNHPEWAHVAPGLKTLNDAVAIRERVLLSLEAAERETDPER---QAEWLT 166
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVKQPESGAIPNI--- 310
I G G V A + +L + + R RR+ +A V E +P +
Sbjct: 167 FVIIGGGPTG-------VELAGAISYMLRHSLPRDFRRIDTAKARVLLLE--GLPRVLTQ 217
Query: 311 -------AADKNSDKYILELQPA--IKGLES-------QIFEADLVLWTVG---SKPLLP 351
A K+ +K +E+ + G++ Q A VLW G SK +
Sbjct: 218 YPEELSATARKDLEKLGVEVHTGSMVTGVDERGVSVGEQRIPARTVLWGAGVAASKLV-- 275
Query: 352 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 411
R D+PL+ G+ + D TL V GH IF LGD ++L G+P+P A A Q
Sbjct: 276 -------RSLDVPLDKAGRVKVDPTLTVPGHEDIFVLGDVASLV-QDGKPVPGIAPAAMQ 327
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG---HSA 468
N+ + +PL PF + + G ++GR AV F + + GP+ +
Sbjct: 328 MGRHVAKNIRLRLEGKPLRPFHYVDKGSFAVIGRG-YAVGLVF-NKLKMSGPLAWLMWAG 385
Query: 469 RKLAYLIRLPTDEHRLKVGVSW 490
+AYL+ +RL V ++W
Sbjct: 386 IHIAYLVGF---RNRLAVMLNW 404
>gi|221311152|ref|ZP_03592999.1| hypothetical protein Bsubs1_17426 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315479|ref|ZP_03597284.1| hypothetical protein BsubsN3_17342 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320394|ref|ZP_03601688.1| hypothetical protein BsubsJ_17305 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324678|ref|ZP_03605972.1| hypothetical protein BsubsS_17456 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|418031588|ref|ZP_12670073.1| hypothetical protein BSSC8_10170 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351472647|gb|EHA32760.1| hypothetical protein BSSC8_10170 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|407962039|dbj|BAM55279.1| NAD-disulfide oxidoreductase [Bacillus subtilis BEST7613]
Length = 419
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 104/387 (26%), Positives = 165/387 (42%), Gaps = 46/387 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 18 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 76 CRYQIKDVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 121
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LGA P+ + G E+AFP + + + R+ R+ EL+ + EK + TI
Sbjct: 122 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDR-----LTIV 175
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVK-----QPESGAIPNIAA 312
G L L+AR +L Y V R + R+ EA+ PE
Sbjct: 176 VGGAGFTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYL 235
Query: 313 DKNSDKY-----ILELQP-----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
++N ++ + E P K E + ++ V+W G + P VE
Sbjct: 236 EENGVEFKIGTAVQECTPEGVRVGKKDEEPEQIKSQTVVWAAGVRG-HPIVEEAGFE--- 291
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLW 421
N RG+ + + L GH +F LGDSS + + + RP P TAQ+A QQ NL
Sbjct: 292 ---NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNEDTERPYPPTAQIAMQQGITVAKNLG 348
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDA 448
I L F+ G + LG ++A
Sbjct: 349 RLIKGGELEEFKPDIKGTVASLGEHNA 375
>gi|418461336|ref|ZP_13032413.1| putative oxidoreductase [Saccharomonospora azurea SZMC 14600]
gi|359738612|gb|EHK87495.1| putative oxidoreductase [Saccharomonospora azurea SZMC 14600]
Length = 452
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 191/432 (44%), Gaps = 47/432 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI ++GGGF G+ RLE L+ ++ + LV ++ P+L ++ SG +
Sbjct: 2 EPPRILVVGGGFAGVECVRRLERLLSPEEAS--ITLVAPRNYQLYLPLLPQVASGMLTPQ 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN-GPMACTHGGTVLLESGLIVE-YDWL 195
+A LL T + P LGV+ C G L + +E YD+L
Sbjct: 60 SVAVSLRRLLRRTRI----------APGAALGVDLDTKVCVVEG---LSGRMRIEPYDYL 106
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNF--ERLEEKGIVQAIN 252
VL+ G+ + +PG AE A TL +A + D +++L+ E E++ +Q +
Sbjct: 107 VLAPGSVTRTFDIPGLAEHARGMKTLAEAAYLRDHVIAQLDIAAAAPEHEEKEARLQFVV 166
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI---------RRVGEFEASVKQPE 303
V T T A+L L+A V G R I R + E S+
Sbjct: 167 VGGGYSGTET----AASLHRLTAAAVDRYPGLDPRAIKWHLVDIAPRLMPELGESLGDAA 222
Query: 304 SGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ D + + E+Q +K + ++ ++WT G +P P D
Sbjct: 223 MNLLRQRGIDISLGVSVAEVQADTVKLTDGRVLPCHTLIWTAGVQP------SPLIGTLD 276
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS---GRPLPATAQVAFQQADFAGWN 419
+ RG+ + E + V G +FA+GD++A+ D S G P TAQ A +Q N
Sbjct: 277 VE-TVRGRVKVTEYMDVPGRHGVFAVGDAAAVPDPSKGDGAVCPPTAQHAQRQGKTVARN 335
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ AA+ PL P+R +++G ++ LG DA +P GV+L G + + +++ L T
Sbjct: 336 VVAALRGYPLQPYRHRDMGLVVDLGGADAVANPL---GVSLKGLPAQTVTRGYHMLALHT 392
Query: 480 DEHRLKVGVSWL 491
+ +V +WL
Sbjct: 393 RVAKARVLTNWL 404
>gi|421739288|ref|ZP_16177609.1| NADH dehydrogenase, FAD-containing subunit [Streptomyces sp. SM8]
gi|406692345|gb|EKC96045.1| NADH dehydrogenase, FAD-containing subunit [Streptomyces sp. SM8]
Length = 428
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 157/382 (41%), Gaps = 47/382 (12%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA- 140
+ ++GGGF G+ A +L + LLVD F+P+LY+L + ++ E+A
Sbjct: 7 VIVVGGGFAGIEAATKLGR------AGVRTLLVDVHGYHQFQPLLYQLATAQIGVSELAR 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD-WLVLSL 199
P + V+ RV + P T+ L G + E D L+++
Sbjct: 61 PLRSIFRRQPSVRVLTARVAAVDPGRR-------------TITLTDGTVYEADDALIVAC 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
GAE PGA E A+P + DA R+ KL L + + E K + A+ P
Sbjct: 108 GAEANFFDTPGARENAYPLYSATDATRLGSKLVALLDQADKDTEPKSMNVAV---VGAGP 164
Query: 260 TG--TPGNREAALKVLS--------ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN 309
TG T G A+ + A++ + L V R +G F + + +
Sbjct: 165 TGVETAGAIADAINYVVPKLFAGDLAKRCSVALVDMVD--RTLGGFSKKSQAYAASRLVE 222
Query: 310 IAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKP--LLPHVEPPNNRLHDLPLN 366
+ E+ + + + +ADLV+W G K LL R +P
Sbjct: 223 RGVRLKLGSAVTEVREDGLSFADGATMDADLVIWAGGLKAGKLL--------RESGMPQG 274
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
G+ + + L V G+ ++ LGD++ + D LP VA Q +A N+ A
Sbjct: 275 RGGRIDVAKDLTVPGYEGVYVLGDAANITDDRDERLPQLGSVAKQSGGWAARNILAQRAG 334
Query: 427 RPLLPFRFQNLGEMMILGRNDA 448
RP PF +++ G M ++GR A
Sbjct: 335 RPTEPFGYKDRGYMAMIGRGSA 356
>gi|189347437|ref|YP_001943966.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chlorobium limicola DSM 245]
gi|189341584|gb|ACD90987.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chlorobium limicola DSM 245]
Length = 433
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 97/422 (22%), Positives = 172/422 (40%), Gaps = 38/422 (9%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K R+ I+GGGF G+ A L + K V L+D+ +F+P+LY++ + +
Sbjct: 2 KKRVVIIGGGFTGINAARIL-----GNKKDIDVTLIDRKNYHLFQPLLYQVAMSALGEGD 56
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA +++AN F + ++ + + T G + YD+L+L+
Sbjct: 57 IAAPLRNMVAN-----FHNITVFKGIAEQIDAENRIVKTDFGDI--------PYDYLILA 103
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL----ERRNFERLEEKGIVQAINV- 253
G + EFA TL A + R++ E ER N + +E K ++ + V
Sbjct: 104 CGVKHHYFGNNQWEEFAPGLKTLAQAKEIRRRVLEAYEAAERTN-DPVERKKLLTFVIVG 162
Query: 254 --ETTICPTGTPG--NREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIP 308
T + G+ G +R K+ +L + V R+ G F+ + + ++
Sbjct: 163 GGPTGVELAGSIGEMSRYTLSKLYRQIDPKLTRIFIVEAAPRILGSFDPELASKATRSLE 222
Query: 309 NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 368
+ + + ++ + ++ EA VLW G + + L +
Sbjct: 223 KLGVQVWTSSMVSDVDANGVQIGNERIEAATVLWAAGVTAI------DTGKEMGLETDRI 276
Query: 369 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
G+ +E L V G+P +F GD + PLP A VA QQ N+ I +
Sbjct: 277 GRIIVEEDLSVPGYPDVFVGGDQAHFSHGLQNPLPGLAPVALQQGRAIARNILLDIQGKA 336
Query: 429 LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGV 488
F + + G+M +GRN A V + + DG L ++ L T +HR+ V +
Sbjct: 337 RKVFHYTDKGQMATIGRNKAIVQ---IGNIRFDGAPAWFTWLLVHIYYLATFKHRIFVLM 393
Query: 489 SW 490
W
Sbjct: 394 QW 395
>gi|381161556|ref|ZP_09870786.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
azurea NA-128]
gi|379253461|gb|EHY87387.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
azurea NA-128]
Length = 452
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 112/431 (25%), Positives = 189/431 (43%), Gaps = 45/431 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI ++GGGF G+ RLE L+ ++ + LV ++ P+L ++ SG +
Sbjct: 2 EPPRILVVGGGFAGVECVRRLERLLSPEEAS--ITLVAPRNYQLYLPLLPQVASGMLTPQ 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN-GPMACTHGGTVLLESGLIVE-YDWL 195
+A LL T + P LGV+ C G L + +E YD+L
Sbjct: 60 SVAVSLRRLLRRTRI----------APGAALGVDLDTKVCVVEG---LSGRMRIEPYDYL 106
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVE 254
VL+ G+ + +PG AE A TL +A + D +++L+ E+ + ++
Sbjct: 107 VLAPGSVTRTFDIPGLAEHARGMKTLAEAAYLRDHVIAQLDIAAAAPEHEE---REARLQ 163
Query: 255 TTICPTGTPGNREAA-LKVLSARKVQLVLGYFVRCI---------RRVGEFEASVKQPES 304
+ G G AA L L+A V G R I R + E S+
Sbjct: 164 FVVVGGGYSGTETAASLHRLTAAAVDRYPGLDPRVIKWHLVDIAPRLMPELGESLGDAAM 223
Query: 305 GAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 363
+ D + + E+Q +K + ++ ++WT G +P P D+
Sbjct: 224 NLLRQRGIDISLGVSVAEVQADTVKLTDGRVLPCHTLIWTAGVQP------SPLIGTLDV 277
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSS---GRPLPATAQVAFQQADFAGWNL 420
RG+ + E + V G +FA+GD++A+ D S G P TAQ A +Q N+
Sbjct: 278 E-TVRGRVKVTEYMDVPGRHGVFAVGDAAAVPDPSKGDGAVCPPTAQHAQRQGKTVARNV 336
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 480
AA+ PL P+R +++G ++ LG DA +P GV+L G + + +++ L T
Sbjct: 337 VAALRGYPLQPYRHRDMGLVVDLGGADAVANPL---GVSLKGLPAQTVTRGYHMLALHTR 393
Query: 481 EHRLKVGVSWL 491
+ +V +WL
Sbjct: 394 VAKARVLTNWL 404
>gi|431796617|ref|YP_007223521.1| NADH dehydrogenase, FAD-containing subunit [Echinicola vietnamensis
DSM 17526]
gi|430787382|gb|AGA77511.1| NADH dehydrogenase, FAD-containing subunit [Echinicola vietnamensis
DSM 17526]
Length = 446
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 96/405 (23%), Positives = 170/405 (41%), Gaps = 60/405 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P +P++ ILGGGF GL A ++ + QV+L+D++ F+P+ Y++ + +
Sbjct: 14 PVSNRPKLVILGGGFAGLKLARKMIK------SEYQVILLDKNNYHQFQPLFYQVATASL 67
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ + + F RV P+ + + G L + V++D
Sbjct: 68 EP-------------SAISFPLRRVFHHTPNVSFRMAEALEIDQEGKRLYTNVGYVDFDQ 114
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERR-NFERLEEKGIVQAIN 252
LVL++GA+ + E+ P T+ +A V +R +S E+ N E +E++ + +
Sbjct: 115 LVLAMGADTNYFGMQNIMEYGTPMKTVSEALYVRNRIISNYEKAINIEDVEQRKALMNV- 173
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAA 312
+ G P E A + R F + + V E+G P + A
Sbjct: 174 ----VIVGGGPTGVELAGAIAELRN-----NVFPKDYPELNFKNMRVVLAEAG--PKLLA 222
Query: 313 ---DKNSDKYILELQP-----------------AIKGLESQIFEADLVLWTVGSKPLLPH 352
++S+K ++ L IK + + E +LW G KP H
Sbjct: 223 GMSQQSSEKAVVYLDKLGVEIMVNAAVEDYDGLTIKIKDHESLETKTLLWAAGVKP--NH 280
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPATAQVAFQ 411
++ L + + G+ D+ +K I+ +GD L D + P AQVA Q
Sbjct: 281 IKG----LREDQMIRNGRLIVDQYNKLKDTEGIYVIGDLCVLTDDDYPKGHPQVAQVAIQ 336
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 456
QAD NL A ++R + F++++LG M +GR A V F++
Sbjct: 337 QADNLAHNLKAVADNRSMKKFKYKDLGSMATVGRKLAVVDLPFIK 381
>gi|296115782|ref|ZP_06834408.1| NADH dehydrogenase [Gluconacetobacter hansenii ATCC 23769]
gi|295977759|gb|EFG84511.1| NADH dehydrogenase [Gluconacetobacter hansenii ATCC 23769]
Length = 426
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 162/378 (42%), Gaps = 30/378 (7%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K RI I+GGG GL A RL V + + ++ LVD+S V+KPML+ +G
Sbjct: 3 QKFRIVIVGGGVAGLALATRLGKSVGKSGRA-EITLVDKSFAHVWKPMLHCFAAGTAANE 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
F + F+ + + P+ +G TVL E L +YD ++L
Sbjct: 62 NDRISFMSQASRHHFDFWPGEISGMDRRARTITLAPVIDPNGETVLDERTL--DYDAVIL 119
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERR-NFERLEEKGIVQAINVET 255
S+G+ PG AE L DA DR +EL + + R + IV T
Sbjct: 120 SIGSRANDFGTPGVAEHCMFIDNLVDANGFNDRFRTELLKAFAYHRELDIAIVGGGATGT 179
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF-----EASVKQPES-GAIPN 309
+ AAL + +L + R + F EA++KQ E+ G +
Sbjct: 180 QLAAELHKALGLAALYSFGQKPPELKITLLEAGPRILPAFPEAVSEAAMKQLEAIGVVVK 239
Query: 310 IAA---DKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 366
+A + + ++L+ + A L +W G K P V + D+ L+
Sbjct: 240 TSAMVSGADENGFMLK--------DGSHVPATLRVWAAGVKA--PDV---TRKFGDIRLS 286
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
GQ E TL V G +FA+GD + + + +P+ TAQ A QQA +L A I
Sbjct: 287 RSGQLEVRPTLQVTGDDNVFAMGDCAFIAE---KPVAPTAQAARQQAHHLARHLPAWIAG 343
Query: 427 RPLLPFRFQNLGEMMILG 444
RPL PF F N G ++ LG
Sbjct: 344 RPLPPFVFSNKGAVVALG 361
>gi|254444543|ref|ZP_05058019.1| cyclic nucleotide-binding domain protein [Verrucomicrobiae
bacterium DG1235]
gi|198258851|gb|EDY83159.1| cyclic nucleotide-binding domain protein [Verrucomicrobiae
bacterium DG1235]
Length = 673
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 103/434 (23%), Positives = 179/434 (41%), Gaps = 57/434 (13%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILGGGF G+Y A L + + ++P + L+ + VF+PML EV ++P
Sbjct: 11 VAILGGGFSGVYAARSLAKKLRKAGREPSIALISEENHMVFQPML-----PEVAGATLSP 65
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHL-GVNGPMACTHGGTVLLESGLIV-----EYDWL 195
R + ++ LCP H+ ++ L +G V + L
Sbjct: 66 RHV-----------VNPIRNLCPGAHVFKAQATKLDFKQRSLTLSAGDFVGSIELRFRQL 114
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------------SELERRNFERLE 243
L LGA+ L +PG E A + DA R+ E+ RR +
Sbjct: 115 ALCLGAKIDLSRIPGMQEHALIMQNVGDAMRLRAHFISRFEEANLAYDPEIRRRLLTFVI 174
Query: 244 EKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI-----RRVGEFEAS 298
G + + G N+ K + ++LVL + + R +G++ A
Sbjct: 175 VGGGYSGVETAGQLIDLGRAINKH--YKNVDWEDIRLVLVHSKDHLLPTLHRNLGDYTAE 232
Query: 299 --VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
K+ + A ++K L+ G E + + V+ TVG+ P P +
Sbjct: 233 KLSKRGVEMILTRRAKAVTANKIYLD-----DGTE---IDTNTVICTVGNAPH-PLILGL 283
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ + + L+ RG+ + + L G ++A GD +++ G P TAQ A ++
Sbjct: 284 DG-IQGVELD-RGRLKVGQDLAAPGIDWLWAAGDCASIPQDDGNTCPPTAQFAMREGLLL 341
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
G NL A I + PFRF+ +GE+ +G A ++G+ G + YL++
Sbjct: 342 GKNLAARIQNSSTKPFRFKAIGELASIGHLSAVAE---IKGMRFSGFFAWWMWRSIYLMK 398
Query: 477 LPTDEHRLKVGVSW 490
LP+ E +++V V W
Sbjct: 399 LPSLERKIRVMVDW 412
>gi|452990851|emb|CCQ97909.1| putative NAD-disulfide oxidoreductase [Clostridium ultunense Esp]
Length = 397
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 165/390 (42%), Gaps = 60/390 (15%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P++ ILG G+GGL TA+ L+ + ++ +V LV++ L+E +G +
Sbjct: 4 PKVLILGAGYGGLMTAIHLQRDIQYNE--AEVTLVNKHNYHYMTTHLHEPAAGTAPQEAV 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+++ + F K V+ + P + V+L G + YD+LV++L
Sbjct: 62 KVNIDEIINTDLIHFRKGTVEAIDPKEK-------------RVILHDGEL-HYDYLVIAL 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
G+EP+ + G E+AF ++L +A R R+ E F R E+G ++ TI
Sbjct: 108 GSEPETFGIQGLREYAFGITSL-NAVRTIREHIEY---TFSRYHEEGEQESY---LTIVV 160
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVKQPESGAIPNIAADKNSDK 318
G + L+ R L + + R R+ EA+ +P DK +
Sbjct: 161 GGAGFTGIEFVGELADRMPDLCRQFDIPREKVRIISVEAA-----PTVLPGF--DKELVE 213
Query: 319 YILELQPAIKGLESQI-------------------FEADLVLWTVGSKPLLPHVEPPNNR 359
Y +E A KG+E +I + V+WT G + N+
Sbjct: 214 YAMERLQA-KGVEFRINTPIKSCTAEGIELANGENILSKTVIWTGGVR--------GNHL 264
Query: 360 LHDLPL-NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
L + RG+ + D L G+ +F +GD+S + GRP P TAQ+A QQ +
Sbjct: 265 LEEAGFETVRGRVKVDPALRAPGYEDVFVIGDASVVFTKEGRPYPPTAQIATQQGENCAK 324
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
NL + + L F G + LGR+D
Sbjct: 325 NLLSLLRGGTLEEFTPSIQGTLASLGRSDG 354
>gi|441150784|ref|ZP_20965630.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440619129|gb|ELQ82183.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 465
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 106/450 (23%), Positives = 183/450 (40%), Gaps = 76/450 (16%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++PR+ I+G GF G A +L + +++LV+ ++ F++ P+L E+ +G ++
Sbjct: 9 RRPRVVIVGAGFAGYECA---RTLAKKARGAAEIVLVNPNDYFLYLPLLPEVSAGILEPR 65
Query: 138 EIAPRFADLLANT--------GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI 189
++ L GV RV+ P G G
Sbjct: 66 RVSVSLTGTLPGVRLVLGQVGGVDLKGRRVEYTDPEGRTGSLG----------------- 108
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIV 248
YD LVL++G+ KL +PG AE A F + +A + D ++E E
Sbjct: 109 --YDRLVLTVGSVNKLLPIPGVAEHAHGFRGMPEALYLRDHMTRQIE---LAGAAEDPAE 163
Query: 249 QAINVETTICPTGTPGNREAALKVLSARKVQ--------------LVLGYFVRCIRRVGE 294
+A+ + G G AA V R + ++L R + + E
Sbjct: 164 RAVRTTFVVVGAGYTGTEVAAHGVTFTRSLARHNAGLRGEPQPRWILLDLADRVLPELDE 223
Query: 295 ------FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 348
K+ + SD +L+ + + ++W VG +P
Sbjct: 224 RLSRTAHRVLTKRGVEIRTKTSVKEATSDGVLLD--------DGTSVDTRSLIWCVGVRP 275
Query: 349 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPATA 406
+P L LP RG+ DE L V GHP + A GD++A+ D + G+ P TA
Sbjct: 276 -----DPLVESL-GLP-TERGRLCVDEFLTVPGHPEVLACGDAAAVPDLTRPGQMTPMTA 328
Query: 407 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 466
Q A +Q A N+ A+ ++ +LG M+ LG AA +P + L GP+ +
Sbjct: 329 QHAQRQGKVAAHNVAASYGQGEPRAYKHHDLGFMVDLGGVQAAANPLHIP---LSGPVAN 385
Query: 467 SARKLAYLIRLPTDEHRLKVGVSWLTKSAI 496
+ + +L+ +P + R++V WL +A+
Sbjct: 386 AVTRGYHLMAMPGN--RVRVAADWLLDAAL 413
>gi|163845740|ref|YP_001633784.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chloroflexus aurantiacus J-10-fl]
gi|222523445|ref|YP_002567915.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chloroflexus sp. Y-400-fl]
gi|163667029|gb|ABY33395.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chloroflexus aurantiacus J-10-fl]
gi|222447324|gb|ACM51590.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chloroflexus sp. Y-400-fl]
Length = 389
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 100/394 (25%), Positives = 165/394 (41%), Gaps = 56/394 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI ILG G+ GL TAL L L + + +VDQ+ +L+ + + +
Sbjct: 2 RIVILGAGYAGLRTALDLARLRRAYGLEITIQVVDQNPYHQLVQLLHLTATAGITDQKSI 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ L V+ + RV+ + P + V+L +G +EYD LVL+LG
Sbjct: 62 YQLDTLFRGREVERIEGRVEAIHPLER-------------RVVLNTGQTLEYDRLVLALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
+E VPGA E+ P T DA ++ + L E R + + I + T I
Sbjct: 109 SETAFQ-VPGAREYTLPLRTFSDALKLRKHLIEQFTRAASITDPTEL--RITMTTAIVGG 165
Query: 261 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVG----EFEASVKQPESGAIPNIAADKNS 316
G G A L+A L C R+ G E ++ + E +P++ ++
Sbjct: 166 GYTGCELAG--ELAAWADDL-------C-RQTGAPRKEVRIALIEREDHLLPHLGTWASN 215
Query: 317 DKY---------------ILELQPA-IKGLESQIFEADLVLWTVGSK--PLLPHVEPPNN 358
+ +++++P ++ + ++ A ++W G + LL P +
Sbjct: 216 EAVRRLERLGVNIFLQTPVVQVEPQRLRFADGRLLRAGTIVWGAGVRAPALLAEAGFPTD 275
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
RL G+ D L V+GH +FA+GD +A+ D G LP TA A +Q +
Sbjct: 276 RL--------GRVLVDRYLRVQGHATVFAIGDCAAVPDGRGGTLPPTASYAMRQGEHLAE 327
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 452
L A + LGE++ LG NDA +P
Sbjct: 328 VLAAEARGEAPRAYEPVELGEVVSLGPNDAVGNP 361
>gi|319778063|ref|YP_004134493.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317171782|gb|ADV15319.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 464
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 109/430 (25%), Positives = 177/430 (41%), Gaps = 53/430 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI ++GGGF GL A L + V ++D+ +F+P+LY++ + + A +I
Sbjct: 19 PRIVVVGGGFAGLEVAKAL------GGAEIGVTIIDRHNHHLFQPLLYQVATAALSAPDI 72
Query: 140 APRFADLLANT-GVQ-FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
A +L VQ F + K+ T ++L G V YD LVL
Sbjct: 73 AEPIRKILGRYPSVQVLFGNVAKI--------------DTEARILVLADGTTVPYDLLVL 118
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+ G++P A ++EDA + +L L + ER + V+ + T
Sbjct: 119 ATGSQPFYFSQESWARVCPGLKSIEDARTIRSRLL-LSFEHAERTTDP--VEQSRLMTIA 175
Query: 258 CPTGTPGNREAALKVLS------ARKVQLVLGYFVRCI------RRVGEFEASVKQPESG 305
G P E A + AR + + + I R + F + +
Sbjct: 176 IIGGGPTGVELAGSIAELSRHTLARDFRNIRPEKTKIILVEAGNRLLAGFAPELSEYARL 235
Query: 306 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNRLHDL 363
+ ++ D D + ++ + ++ L LW G + PL + +
Sbjct: 236 RLESLGVDVALDSRVEAIEAQKITVGGKVIPVALTLWAAGVAASPLAAQL--------GV 287
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
L+ G+ + L V G IFALGD + D +G+PLP AQVA QQ + G L
Sbjct: 288 GLDRGGRVKVGSDLQVMGRSDIFALGDVALFLDENGQPLPGLAQVAKQQGEHLGKALARR 347
Query: 424 INDRPLLP-FRFQNLGEMMILGRNDAAVSPSFVEG-VTLDGPIGHSARKLAYLIRLPTDE 481
+ LP F F+N G I+GR+ A F G + L G SA + ++ L +
Sbjct: 348 TDTGEDLPAFVFRNRGNTAIVGRHAAV----FESGRLKLKGWFAWSAWAIIHVYLLVGFQ 403
Query: 482 HRLKVGVSWL 491
HR++V + WL
Sbjct: 404 HRVQVSIQWL 413
>gi|336114138|ref|YP_004568905.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus coagulans 2-6]
gi|335367568|gb|AEH53519.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus coagulans 2-6]
Length = 393
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 161/411 (39%), Gaps = 103/411 (25%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL +AL + +DD + +V++ L+ L +G V ++
Sbjct: 4 KIVILGAGYGGLLSALSAREYLSKDD--AAITVVNRVPDHQIITELHRLAAGGVSEKRVS 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L V D V + P V L SG + YD LV++LG
Sbjct: 62 LPLRKLFKGKDVDVQVDEVTKISPDSK-------------EVSLGSGFKLNYDVLVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFERLEEK-------------G 246
+E +PG E +F +++DA R+ + S LE+ + + + K G
Sbjct: 109 SETAFFGIPGLEENSFLLKSVDDAKRIHAHIESCLEQ--YAKTKNKADATFVVGGGGLTG 166
Query: 247 I-----------------------VQAINVET--TICPTGTPGNREAALKVLSARKVQLV 281
I + I VE +I P P E A K L AR VQ
Sbjct: 167 IELVGELADKVPGWSKKFAIDPSEISLICVEAAPSILPNFAPNLIERATKSLEARGVQFF 226
Query: 282 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 341
G IP N ++EL+ + Q E ++
Sbjct: 227 TG-----------------------IPVTKFQDN----VVELK------DGQKIETKTLV 253
Query: 342 WTVGSKPLLPHVEPPNNRL---HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 398
WT G + NR+ + +N RG+A + L HP +F GDS+ + S
Sbjct: 254 WTGGVQ---------GNRVVANSGIEVN-RGRATVNAYLQSTSHPDVFVAGDSAVVFPSE 303
Query: 399 G-RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
G RP P TAQ+++Q + G+NL+A + + F+ N G + LGR DA
Sbjct: 304 GARPYPPTAQMSWQMGELIGYNLYAYLKGGKMQTFQPVNSGTLASLGRKDA 354
>gi|390574798|ref|ZP_10254910.1| NADH dehydrogenase [Burkholderia terrae BS001]
gi|389933249|gb|EIM95265.1| NADH dehydrogenase [Burkholderia terrae BS001]
Length = 464
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 110/441 (24%), Positives = 182/441 (41%), Gaps = 75/441 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I I+GGGF G A LE +V + P +V+LV + F PML E++ V ++
Sbjct: 7 IVIIGGGFAGTTLARHLEKIV----RPPYRVILVSEESYTTFNPMLAEVVGASVFPEQVI 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+L + R + +D V+ HG T L + ++ L+ + G
Sbjct: 63 VPIRQMLV-------RSRFIMATITD---VDYTRRVVHGRT--LAGTREIPFEHLIFAFG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETTICP 259
LD+VPG AE + P + DA + +R L +L R +E CP
Sbjct: 111 TRANLDIVPGMAEHSLPLKLVGDAMFIRNRVLRQLAR----------------IELETCP 154
Query: 260 TGTPGNREAALKVL----SARKVQLVLGYFVRCIRRV------GEFEASVKQPESGAIPN 309
R V+ S +V L ++ I+R E ++ Q +P
Sbjct: 155 ELR--RRLGHFIVIGGGFSGVEVAGELADYIHSIKRFYKLVKDDELAITILQDGERLLPE 212
Query: 310 I-------AADKNSDKYI---LELQPA------IKGLESQIFEADLVLWTVGSKPLLPHV 353
+ AA S + I L+ + A + L+ + V+ T+G+KP
Sbjct: 213 LPEPLGIAAARLMSGRGIDVRLKRRAAQVHANGVTLLDGTTIDGGTVVCTIGTKP----- 267
Query: 354 EPPNNRLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL-PATAQVA 409
P +L LP+ RG+ ET+ + V+G P ++A+GD + + +++ L P TAQ A
Sbjct: 268 NPLVQKLIQSVALPVQ-RGRIETEPDMSVRGMPSLWAIGDCALVSNAATDSLSPPTAQFA 326
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
QA N+ + +P PF ++ G M +G + GV + G
Sbjct: 327 MAQARQLAVNVAHCLLHQPGKPFSYETRGAMATIGHMKGVAQ---IYGVNITGLPAWLLW 383
Query: 470 KLAYLIRLPTDEHRLKVGVSW 490
+ YL R+PT +L++ V W
Sbjct: 384 RALYLARMPTLGRKLRIFVEW 404
>gi|120602932|ref|YP_967332.1| NADH dehydrogenase [Desulfovibrio vulgaris DP4]
gi|120563161|gb|ABM28905.1| NADH dehydrogenase [Desulfovibrio vulgaris DP4]
Length = 439
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 98/387 (25%), Positives = 161/387 (41%), Gaps = 47/387 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K R+ ++G GF GL+ RL S +K +V L+D+ F P+LY++ + E++ +
Sbjct: 3 KARVVVVGAGFAGLWVVRRLAS-----EKDVEVTLLDRHNYHTFLPLLYQVAAAELEPEQ 57
Query: 139 IA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA P ++ V+ V+ + + L + GL + YD+LV+
Sbjct: 58 IAYPLRGICRRHSNVRLAVTEVRDIDTARKL--------------VRADGLDIPYDYLVV 103
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDA-CRVDRKLSELERRNFERLEEKGIVQAINVETT 256
+ G+ VPGA E +F TLE+A C ++ +S E+ E E+
Sbjct: 104 AAGSRTAYFGVPGAEEHSFSLKTLEEAVCLRNQIISCFEQAALESDPERRRAMLTFTVVG 163
Query: 257 ICPTGTPGNREAALKV----------LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA 306
PTG A V L V++VL + +G F ++
Sbjct: 164 GGPTGVEYAGALAELVRAPLRKDFPELDMNDVRVVLLEAAPGV--LGGFPERLRGYAKKR 221
Query: 307 IPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKP--LLPHVEPPNNRLHDL 363
+ + + D + E+ A + + V+WT G + + H+ L
Sbjct: 222 LGAMGVEVRLDASVAEVTAAGVLFASGEHLPTHTVVWTAGVRGEVVAEHM--------GL 273
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
PL G+ TL V+G P +F +GD S G+ P A A QQ A N+ A
Sbjct: 274 PLGRGGRVAVSPTLQVEGLPEVFVVGDMSL---PEGQNPPMNAPNATQQGRLAAENILAM 330
Query: 424 INDRPLLPFRFQNLGEMMILGRNDAAV 450
+ R +PFR+++ G M +GR A V
Sbjct: 331 LQRRDPVPFRYRDKGAMATIGRQAAVV 357
>gi|398306219|ref|ZP_10509805.1| NAD-disulfide oxidoreductase [Bacillus vallismortis DV1-F-3]
Length = 404
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 165/388 (42%), Gaps = 46/388 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 3 KPKIVILGAGYGGLMTVTRLTKFVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L +G + +YD++V+
Sbjct: 61 CRYQIKDVINQSRVNFVQDTVKAIKIEEK-------------KVVLANGEL-QYDYVVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LGA P+ + G E+AFP + + + R+ R+ EL+ + EK + TI
Sbjct: 107 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYHTEAEKRPDR-----LTIV 160
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVK-----QPESGAIPNIAA 312
G L L+AR +L Y + R + R+ EA+ PE
Sbjct: 161 VGGAGFTGIEFLGELAARIPELCKEYDIDRSLVRIVCVEAAPTVLPGFDPELVDYAVHYL 220
Query: 313 DKNSDKY-----ILELQP-----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
++N ++ + E P K E + ++ V+W G + P VE
Sbjct: 221 EENGVEFKIGTAVQECTPEGVRVGKKDEEPEQIKSQTVVWAAGVRG-HPIVEEAGFE--- 276
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLW 421
N RG+ + + L GH +F LGDSS + + + RP P TAQ+A QQ NL
Sbjct: 277 ---NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNEDTERPYPPTAQIAMQQGITVAKNLG 333
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAA 449
I L F+ G + LG ++A
Sbjct: 334 RLIKGGELEQFKPDIKGTVASLGEHNAV 361
>gi|170742659|ref|YP_001771314.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Methylobacterium sp. 4-46]
gi|168196933|gb|ACA18880.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Methylobacterium sp. 4-46]
Length = 440
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/394 (25%), Positives = 163/394 (41%), Gaps = 47/394 (11%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ ++ RI I+GGG GL A +L + K+ +V LVD+S ++KP+L+E+ +G +D
Sbjct: 4 EAERHRIVIVGGGAAGLQLATKLGDR-YGRRKQAEVTLVDRSRTHIWKPLLHEVAAGSMD 62
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTH---GGTVLLESGLIVEY 192
A D L + F+ R+ + D +A +H G V E + Y
Sbjct: 63 VGHHA---VDYLHHAHAHHFRYRIGEMVGLDRERRVVRLAASHDAEGREVTPERD--IPY 117
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAIN 252
D LV+++G+ PG E A T + A R R+L R + V+A
Sbjct: 118 DTLVIAVGSASNDFGTPGVKEHAIALDTPDQAQRFHRRLINAMIRAH---AQDAPVRAGQ 174
Query: 253 VETTICPTGTPGNREAALKVLSARKV------------QLVLGYFVRCIRRVGEFEASVK 300
+ + G G A + R+V L L R + +
Sbjct: 175 LHVAVIGAGATGTELVAELHRTTRQVAATGLDRIDPDKDLKLTLIEAADRILPAVPERLS 234
Query: 301 QPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHV------ 353
+ + I + + + E++ ++ + ++LV+W G + P V
Sbjct: 235 RDVMALLAGIGVEVRTGARVTEVRADGVQLADGSFIASELVVWAAGVRA--PEVLRDLGG 292
Query: 354 --EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAF 410
NN+L LP Q DE +FALGD + L D ++ RP+P AQ A
Sbjct: 293 LETTRNNQLVVLPSL---QTTRDEN--------VFALGDCAYLIDPATQRPIPPRAQAAH 341
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
QQA + + RPL PFR+++ G ++ LG
Sbjct: 342 QQASHLLRQMPNRLAGRPLAPFRYRDFGSLVSLG 375
>gi|290894186|ref|ZP_06557156.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL J2-071]
gi|404408770|ref|YP_006691485.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC2376]
gi|290556249|gb|EFD89793.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL J2-071]
gi|404242919|emb|CBY64319.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC2376]
Length = 403
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 172/389 (44%), Gaps = 52/389 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ NT F +D V + + TV L++ + YD+L+++
Sbjct: 59 LMYPLDKVVNNTKTTFIQDTVVKINKDEK-------------TVTLDANGDISYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG+E + + G E+AF +++E ++ R + E K + TI
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKI--------RAHIEAQFAKWKTDPRDELLTII 157
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-------RCI----RRVGEFEASVKQPESGAI 307
G L L+ R +LV Y V C+ + + +F+A + G +
Sbjct: 158 VGGAGFTGIEFLGELTNRIPELVKEYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGVGVL 217
Query: 308 PNIAADKNSDKYILELQP-AIKGLESQI----FEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + + K + E +K ES+ +A ++W G + N+ +
Sbjct: 218 EDRGVEFHVGKPVKEATADGVKYAESETEVREIKAATIIWAAGVR--------GNSVIEA 269
Query: 363 LPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNL 420
A RG+ + + L V G+ I +GD S + + ++ RP P TAQ+A QQAD A NL
Sbjct: 270 SGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAAVNL 329
Query: 421 WAAIN-DRPLLPFRFQNLGEMMILGRNDA 448
+ + L F + G + LG NDA
Sbjct: 330 AKLVKGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|238064431|ref|ZP_04609140.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Micromonospora sp. ATCC 39149]
gi|237886242|gb|EEP75070.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Micromonospora sp. ATCC 39149]
Length = 468
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 110/444 (24%), Positives = 194/444 (43%), Gaps = 46/444 (10%)
Query: 68 ASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY 127
AS T T KPR+ I+G GF G + A ++L + +++L++ ++ F++ P+L
Sbjct: 27 ASVTGTALAMTKPRVVIVGAGFAGYHAA---KTLSRTARSRAEIVLLNSTDYFLYLPLLP 83
Query: 128 ELLSGEVDAWEIAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLES 186
E+ +G V+ ++ + L V + DRV L + +G P GG
Sbjct: 84 EVAAGVVEPGRLSVPLSGTLDGVRVVVGEADRVDLQ--NRWVGYTMP----EGG------ 131
Query: 187 GLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEK 245
G + YD LVL++G+ KL +PG E+A F L +A + D + ++E L +
Sbjct: 132 GGRLAYDRLVLAVGSVNKLLPIPGVTEYAHGFRGLPEALYLHDHVVRQIE---LAELTDD 188
Query: 246 GIVQAINVETTICPTGTPGNREAAL-KVLSARKVQLVLGYFVR--------CIRRVGEFE 296
Q + G G AA ++ + R V VR R + E +
Sbjct: 189 PAEQRARTTFVVVGAGYTGTEVAAHGQLFTDRLVAQRPHLAVRPRWMLLDVAPRVLPELD 248
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
+ + + D + E P + + + ++W VG +P
Sbjct: 249 ERMSRTADRVLRRRDVDVRMGTSVSEATPDGVMLTDGEYVPTCSLIWCVGVRP------- 301
Query: 356 PNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPATAQVAFQQ 412
+ + +L L +G+ DE L V G P ++A GD++A+ D + G+ TAQ A +Q
Sbjct: 302 -DPFVAELGLRTEKGRLVVDEYLTVPGFPEVYACGDAAAVPDLTRPGQICTMTAQHAQRQ 360
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
N+ A+ P++ +LG ++ LG DAA +P V+L G + +
Sbjct: 361 GKLVAHNIAASYGQGSRRPYKHHDLGWVVDLGGRDAAANPL---KVSLAGLPAKAVTRGY 417
Query: 473 YLIRLPTDEHRLKVGVSWLTKSAI 496
+L+ +P + R +VG WL +A+
Sbjct: 418 HLLAMPGN--RARVGADWLLDAAL 439
>gi|381191299|ref|ZP_09898809.1| NADH dehydrogenase (ubiquinone) [Thermus sp. RL]
gi|380450659|gb|EIA38273.1| NADH dehydrogenase (ubiquinone) [Thermus sp. RL]
Length = 395
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 146/353 (41%), Gaps = 60/353 (16%)
Query: 112 LLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN 171
LLVD +F+P+LY++ +G ++ IA L+ V + R L
Sbjct: 32 LLVDARNHHLFQPLLYQVATGFLEGPAIAYPLRALVRRGRVLLARARAVDL--------- 82
Query: 172 GPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRK 230
G +LLE G ++ Y LV++ G+ P VPG E A TL A RV R
Sbjct: 83 ------EGRRLLLEDGDVLPYRHLVVATGSLPSDLGVPGVGERALLLKTLGQALRVRHRL 136
Query: 231 LSELERRNFE--------------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSAR 276
L LER E +E G + P P EA + +L A
Sbjct: 137 LMALERAAREGAPLSLVVVGGGPTGVELSGALA--EFLRYALPRDFPEIPEARVVLLEA- 193
Query: 277 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIF 335
R + F ++ + A+ ++ + + ++ ++ +
Sbjct: 194 -----------GPRLLPAFRPALSRYAERALAHLGVEVRLGAQVAAVEERGVRLASGEGL 242
Query: 336 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 395
DL+LW VG + N L LP +ARG+ TD L + GHP ++ +GD + L
Sbjct: 243 VGDLILWAVGVR---------GNPLPGLPADARGRVPTDPYLRLPGHPEVYVVGDLNGL- 292
Query: 396 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
P A VA QQ +A NL A+ + LPFR+++ G++ ++GRN A
Sbjct: 293 -----GFPQLAPVALQQGAWAAGNLLRALRGQDPLPFRYRDRGQLAVIGRNRA 340
>gi|291453014|ref|ZP_06592404.1| NADH dehydrogenase [Streptomyces albus J1074]
gi|291355963|gb|EFE82865.1| NADH dehydrogenase [Streptomyces albus J1074]
Length = 428
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 157/382 (41%), Gaps = 47/382 (12%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ++GGGF G+ A +L + LLVD F+P+LY+L + ++ E+A
Sbjct: 7 VIVVGGGFAGIEAATKLGR------AGVRTLLVDVHGYHQFQPLLYQLATAQIGVSELAR 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGG-TVLLESGLIVEYD-WLVLSL 199
+ PS + G A G T+ L G + E D L+++
Sbjct: 61 PLRSIFRRQ-------------PSVRVLTAGVAAVDPGRRTITLTDGTVYEADDALIVAC 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
GAE PGA E A+P + DA R+ KL L + + E+K + A+ P
Sbjct: 108 GAEANFFDTPGARENAYPLYSATDATRLGSKLVALLDQADKDTEQKSMNVAV---VGAGP 164
Query: 260 TG--TPGNREAALKVLS--------ARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN 309
TG T G A+ + A++ + L V R +G F + + +
Sbjct: 165 TGVETAGAIADAINYVVPKLFAGDLAKRCSVALVDMVD--RTLGGFSKKSQAYAASRLVE 222
Query: 310 IAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKP--LLPHVEPPNNRLHDLPLN 366
+ E+ + + + +ADLV+W G K LL R +P
Sbjct: 223 RGVRLKLGSAVTEVREDGLSFADGATMDADLVIWAGGLKAGKLL--------RESGMPQG 274
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
G+ + + L V G+ ++ LGD++ + D LP VA Q +A N+ A
Sbjct: 275 RGGRIDVAKDLTVPGYEGVYVLGDAANITDDRDERLPQLGSVAKQSGGWAARNILAQRAG 334
Query: 427 RPLLPFRFQNLGEMMILGRNDA 448
RP PF +++ G M ++GR A
Sbjct: 335 RPTEPFGYKDRGYMAMIGRGSA 356
>gi|220911996|ref|YP_002487305.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Arthrobacter chlorophenolicus A6]
gi|219858874|gb|ACL39216.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Arthrobacter chlorophenolicus A6]
Length = 474
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 110/437 (25%), Positives = 183/437 (41%), Gaps = 49/437 (11%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ++GGG+ GLY AL+L+ + + V +VD ++P L E+ G ++A
Sbjct: 1 MLVVGGGYVGLYVALKLQKKI--ANAGGIVTVVDPLPYMTYQPFLPEVAGGNIEARHAVV 58
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
L + + + RV + DH +A + GG V Y +VL+ GA
Sbjct: 59 SHRKHLKQS--ELIQGRVTAI---DHANRTAVVAPSDGGETFE-----VPYFDVVLAAGA 108
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI---- 257
+ + G A+ T+E+A + K+ LER +A + +
Sbjct: 109 ITRTFPIKGLADKGIGLKTIEEAVALRNKV--LERIELGSTMTDPAARAKALTFVVVGGG 166
Query: 258 -----CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV------GEFEASVKQPESGA 306
C T AA++ K + V V + R+ + E V+ S
Sbjct: 167 FAGIECITEMEDMARAAVRNNPRVKQEEVRFVLVEAMGRIMPEVTASQAEWVVEHLRSRG 226
Query: 307 IP---NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 363
I N + D S + L+L +Q FEAD ++WT G + P R D
Sbjct: 227 IEVLLNTSLD--SAEGALKLINLPDKTPAQEFEADTLVWTAGVQ------ANPMVRSTDF 278
Query: 364 PLNARGQAETDETLCVKGHPRI----FALGDSSALRDSSGRPLP-----ATAQVAFQQAD 414
PL RG+ L + G I +A GD SA+ D +G+ LP AQ A +QA
Sbjct: 279 PLEPRGRVRVLPDLRIGGDEGIVENAWAAGDISAVPDLTGKGLPDGTCVPNAQHALRQAK 338
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
NLWA+ D+PL ++ +NLG + G + + + + L GP+ A + +
Sbjct: 339 RLAKNLWASRWDKPLKDYKHKNLGAVAGFGEWKGVANINLLGRIGLKGPLAWLAHRGYHG 398
Query: 475 IRLPTDEHRLKVGVSWL 491
+ +PT E + +V ++W+
Sbjct: 399 MAMPTFERKFRVILNWI 415
>gi|375102094|ref|ZP_09748357.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
cyanea NA-134]
gi|374662826|gb|EHR62704.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
cyanea NA-134]
Length = 386
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 157/374 (41%), Gaps = 50/374 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I +LG G+ GL A+ L + D + LV+ +ERF + L+++ SG+ +A
Sbjct: 3 KIVVLGAGYAGLTAAVNLAARTKHRDDV-HITLVNAAERFTERLRLHQVASGQ----RVA 57
Query: 141 P-RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
R +LL +TGV+F + V L + TV ++ ++E+D LV +L
Sbjct: 58 DFRIPELLRDTGVEFVRGWVTGLDATAR-------------TVRVDDQRVLEFDTLVYAL 104
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
G+ + VPGA A+ + DA + R+LSE +C
Sbjct: 105 GSVARTSTVPGADIHAYTLDSTHDAELLARRLSEPGAPTV----------------AVCG 148
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 319
+G G AA +VL +GE + A+ + +
Sbjct: 149 SGLTGVEAAAEIAEQHPAADVVLLGRQEPGAALGE---RARAHVRAALDRLGVRVRDEVE 205
Query: 320 ILELQPA---IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 376
I+++ P + G ES AD+VLWT G P L ++ G+ TD +
Sbjct: 206 IVKVLPGSVELAGGES--VTADVVLWTSGV------TASPLASAAGLEVDELGRIVTDSS 257
Query: 377 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 436
L HP ++A+GD++A+R G L T Q A ++ A + R FRF
Sbjct: 258 LRSVTHPHVYAVGDAAAVRQRFG-VLHGTCQSGMPTGVHAAVSITAELKGRRPKAFRFGY 316
Query: 437 LGEMMILGRNDAAV 450
L + LGR+DA V
Sbjct: 317 LHTPVSLGRHDAVV 330
>gi|366086755|ref|ZP_09453240.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus zeae
KCTC 3804]
Length = 396
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/385 (23%), Positives = 163/385 (42%), Gaps = 54/385 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ G+ L L K + +VDQ+ + L+E+ +G V A +I
Sbjct: 4 VVILGAGYAGIRAVKTLSKLA---PKGTTITVVDQNAEHEERTQLHEVAAGTVPASKITF 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L VQF + +V + S + V+L + + YD+L+++LG
Sbjct: 61 NIQQVLPKD-VQFLQAKVSKVDVSTKM-------------VILANHAPLRYDYLIIALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI-------NVE 254
+ +PGAAE A P + A + + + E N+++ ++ + I VE
Sbjct: 107 RSEDFGLPGAAENALPLDNVTSAETITKTI-EQHVANYKQSQDPKDLTVIVAGAGFTGVE 165
Query: 255 -----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPN 309
T P +K++S +L F + ++ +S +
Sbjct: 166 LLGELTHSMPALAKKYDTPPIKIISMEMATRILPMFDEKLANY-----AMDYLKSHGVTM 220
Query: 310 IAADKNSDKYILELQPAI----KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
+ K I +++P G + + E + ++WTVG ++ + D
Sbjct: 221 MTGSK-----ITKIEPNAVVYADGDQEKKVEGNTIIWTVGVSG--------SDVIADSGF 267
Query: 366 NAR-GQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
R + L ++ HP +F +GD SA + SGRP P TAQ++ Q+ D AG N+ AA
Sbjct: 268 KQRRNRVVVSNHLNLEDHPEVFIIGDVSAVMAGDSGRPYPTTAQISTQEGDQAGKNVAAA 327
Query: 424 INDRPLLPFRFQNLGEMMILGRNDA 448
+N +PL F ++ G + LG D
Sbjct: 328 LNGQPLTDFVYKPKGTVASLGSQDG 352
>gi|289774182|ref|ZP_06533560.1| oxidoreductase [Streptomyces lividans TK24]
gi|289704381|gb|EFD71810.1| oxidoreductase [Streptomyces lividans TK24]
Length = 409
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 164/382 (42%), Gaps = 56/382 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K RI +LG G+ G Y A L + + D ++ +V+ FV + L++L +G+ A E
Sbjct: 2 KHRIVVLGAGYAGAYVAGTLARRLSRQDT--EITVVNAEPDFVQRLRLHQLSAGQ--AIE 57
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
AP+ ++ A TG++ RV + P + +A GG E G YD L+ +
Sbjct: 58 -APQLTEVFAGTGIRLRLARVTAVDPERQVVA---VADADGGEGHGELG----YDTLLYA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG+ VPG AE AF + A R+ ++L L RR+ E G V + V T
Sbjct: 110 LGSHVTTHGVPGVAEHAFDVAGRPSALRLRKRLDVLSRRD-----EGGSVLIVGVGLT-- 162
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI--AADKNS 316
E A ++ +R G V I R GE A Q +GA ++ A D+
Sbjct: 163 ------GIETATEIAESRP-----GLSVTLIAR-GELGA---QLSAGARRHLRQACDRLG 207
Query: 317 DKYI----LELQPAIKGL--ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQ 370
+ +E A + L + +D +WT G P L + G+
Sbjct: 208 ISVLEHTEVEAVEAARVLCTDGTALTSDATVWTAG------FAVSPIAAAGGLEVTETGR 261
Query: 371 AETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI----ND 426
D T+ HP ++A GDS+ + +GRPLP ++ A + G AAI
Sbjct: 262 IVVDRTMQSVSHPNVYAAGDSAYVVGDNGRPLP----MSCASAGYTGMQATAAIVGRLTG 317
Query: 427 RPLLPFRFQNLGEMMILGRNDA 448
R + + + LG + LGR DA
Sbjct: 318 RTIPNTKLEYLGNHISLGRRDA 339
>gi|452856820|ref|YP_007498503.1| putative NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452081080|emb|CCP22847.1| putative NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 406
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/410 (23%), Positives = 164/410 (40%), Gaps = 92/410 (22%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ ++E +G +
Sbjct: 5 KPKIVVLGAGYGGLMTVTRLPKHIGAND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + + V L G I YD+LV+
Sbjct: 63 CRYQIKDVINESRVKFVQDTVKAIDVQNK-------------KVTLSQGDI-PYDYLVIG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERR-----------NF 239
LGA P+ + G EFAFP + + + ++ + +E E+R F
Sbjct: 109 LGAVPETFGIKGLKEFAFPIANINTSRQLKDHIELQFATYNTEAEKRPDRLTIVVGGAGF 168
Query: 240 ERLE------------------EKGIVQAINVET--TICPTGTPGNREAALKVLSARKVQ 279
+E ++ +V+ + VE T+ P P E A++ L ++ V+
Sbjct: 169 TGIEFLGELANRKPELCRYYDIDESLVRIVCVEAAPTVLPGFDPELVEYAVQYLESKGVE 228
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 339
+G V+ R G + K + E + ++
Sbjct: 229 FKIGTAVQECRADG----------------VTVGKKDE-------------EPEEIKSQT 259
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSS 398
V+W G + P VE N RG+ + + L GH +F LGDSS + + +
Sbjct: 260 VVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDDVFILGDSSLFINEET 312
Query: 399 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
RP P TAQ+A QQ + NL I L F+ G + LG ++A
Sbjct: 313 ERPYPPTAQIAMQQGETVAKNLGGLIKGGQLEEFKPDIKGTVASLGEHNA 362
>gi|335038466|ref|ZP_08531709.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Caldalkalibacillus thermarum TA2.A1]
gi|334181643|gb|EGL84165.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Caldalkalibacillus thermarum TA2.A1]
Length = 399
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/412 (24%), Positives = 169/412 (41%), Gaps = 98/412 (23%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP I ILG G+GG+ AL L+ + ++ + LV++++ L++ +G + +
Sbjct: 3 KPSIVILGAGYGGIVAALGLQKRLNYNE--ADITLVNKNDYHYITTELHQPAAGTMHHDQ 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+L+ ++F KD V + V L++G + YD+LV+
Sbjct: 61 ARVGIKELIDEKKIKFVKDTVVAIDREQQ-------------KVTLQNGEL-HYDYLVVG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK---------LSELERRNF---------- 239
LG+EP+ + G E AF +++ ++ R+ R+ +E ER ++
Sbjct: 107 LGSEPETFGIEGLREHAFSINSI-NSVRIIRQHIEYQFAKFAAEPERTDYLTIVVGGAGF 165
Query: 240 ----------ERLEE--------KGIVQAINVET--TICPTGTPGNREAALKVLSARKVQ 279
+R+ E +V+ INVE T+ P P A+ VL + V+
Sbjct: 166 TGIEFVGELADRMPELCAEYDVDPKLVRIINVEAAPTVLPGFDPALVNYAMDVLGGKGVE 225
Query: 280 LVLGYFV-RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 338
+G + RC PE I + G E +I +A
Sbjct: 226 FKIGTPIKRC------------TPEGVVI------------------EVDGEEEEI-KAA 254
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRD 396
V+WT G + N+ + RG+ + D L GH IF +GD + + +
Sbjct: 255 TVVWTGGVRG--------NSIVEKSGFETMRGRIKVDPYLRAPGHENIFIVGDCALIINE 306
Query: 397 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ RP P TAQ+A Q + NL A I + PF+ G + LGRNDA
Sbjct: 307 ENNRPYPPTAQIAIQHGENVAANLAALIRGGSMTPFKPHIRGTVASLGRNDA 358
>gi|380503657|emb|CAE51197.2| NADH dehydrogenase [Thermus thermophilus HB8]
Length = 395
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 146/353 (41%), Gaps = 60/353 (16%)
Query: 112 LLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN 171
LLVD +F+P+LY++ +G ++ IA L+ V + R L
Sbjct: 32 LLVDARNHHLFQPLLYQVATGFLEGPAIAYPLRALVRRGRVLLARARAVDL--------- 82
Query: 172 GPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRK 230
G +LLE G ++ Y LV++ G+ P VPG E A TL A RV R
Sbjct: 83 ------EGRRLLLEDGDVLPYRHLVVATGSLPSDLGVPGVGERALLLKTLGQALRVRHRL 136
Query: 231 LSELERRNFE--------------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSAR 276
L LER E +E G + P P EA + +L A
Sbjct: 137 LMALERAAREGAPLSLVVVGGGPTGVELSGALA--EFLRYALPRDFPEIPEARVVLLEA- 193
Query: 277 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIF 335
R + F ++ + A+ ++ + + ++ ++ +
Sbjct: 194 -----------GPRLLPAFRPALSRYAERALAHLGVEVRLGAQVAAVEERGVRLASGEGL 242
Query: 336 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 395
DL+LW VG + N L LP +ARG+ TD L + GHP ++ +GD + L
Sbjct: 243 VGDLILWAVGVR---------GNPLPGLPADARGRVPTDPYLRLPGHPEVYVVGDLNGL- 292
Query: 396 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
P A VA QQ +A NL A+ + LPFR+++ G++ ++GRN A
Sbjct: 293 -----GFPQLAPVALQQGAWAAGNLLRALRGQDPLPFRYRDRGQLAVIGRNRA 340
>gi|374309547|ref|YP_005055977.1| NADH dehydrogenase (ubiquinone) [Granulicella mallensis MP5ACTX8]
gi|358751557|gb|AEU34947.1| NADH dehydrogenase (ubiquinone) [Granulicella mallensis MP5ACTX8]
Length = 459
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 162/392 (41%), Gaps = 56/392 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++PR+ I+G GFGG+ A L L V +VD+ F+P+LY++ +
Sbjct: 8 RRPRVVIVGAGFGGINAAAGLAKL------PVDVTVVDRKNHHTFQPLLYQVALAVLSPG 61
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA P + L NT + D V G + MA H ++L+SG ++ YD+L+
Sbjct: 62 DIAQPIRSILRENTNTEVIMDEVT--------GFD--MAERH---IMLKSGAVLIYDYLI 108
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVET 255
L+ G+ A+ A T+EDA + R+ L E ++L E G +N
Sbjct: 109 LATGSTHSYFGKDEWAKLAPGLKTIEDATEIRRRVLLAFELAERQKL-ESGSHPPLNF-- 165
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES-----GAIPNI 310
+ G P E A + K+ Y + R + A V E GA P
Sbjct: 166 -VIVGGGPTGVELAGSISDIAKL-----YMTKDFRHIDPGTAQVLILEGSPNILGAYPED 219
Query: 311 AADKNSDK------------YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
K ++ ++ ++QP + + E+ LW G + P
Sbjct: 220 LQKKAVEQLNALGVRVRTGAHVSDIQPGYVMVGDERVESVCTLWAAGVQ------ASPLG 273
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
++ + + RG D+ L GH IF LGD + + G+ +P AQ A Q +A
Sbjct: 274 KILGVETDRRGSVMVDDHLHPAGHSEIFVLGDLAHF-EQDGKQVPGVAQPAMQMGAYAAK 332
Query: 419 NLWAAINDR--PLLPFRFQNLGEMMILGRNDA 448
+ + + PFR+ + G+M +GR A
Sbjct: 333 RIGLLLEGKGDTQKPFRYFDKGDMATIGRKAA 364
>gi|220916900|ref|YP_002492204.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219954754|gb|ACL65138.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 453
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/382 (24%), Positives = 150/382 (39%), Gaps = 35/382 (9%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + I+GGGF GLY A L ++ LVD+ +F+P+LY++ + +
Sbjct: 9 QQTPHVVIVGGGFAGLYAARELAG------APVRITLVDRRNHHLFQPLLYQVATAALSP 62
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA +L+ V+ + P+ + L G ++YD+L
Sbjct: 63 ADIAEPIRHVLSRQRNVRTLLAEAAAVEPAQR-------------RLRLADGYALDYDFL 109
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFE--RLEEKGIVQAIN 252
V++ GA A FA TLEDA + R+ L+ ER + R + ++ +
Sbjct: 110 VVAAGATHSYFGHDEWARFAPGLKTLEDALEIRRRVLTAFERAEADPDRQRREALLTFVV 169
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI------RRVGEFEASVKQPESGA 306
V G + R + V R I R + AS+
Sbjct: 170 VGGGPTGVELAGALAEIARFTVPRDFRTVSTERARVILIEGSERVLPALPASLSAAAQRD 229
Query: 307 IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 366
+ + + K + + P + + A VLW G P R +PL+
Sbjct: 230 LERLGVQVWTGKRVTGIDPRGVQVGEERVAARTVLWAAGV------AGAPLARTLGVPLD 283
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
G+ L V GH I+ +GD + RD G +P A A QQ AG NL A +
Sbjct: 284 PAGRVPVSPDLTVPGHEEIYVVGDLALARDKHGSAIPGVAPAAIQQGRHAGRNLLATLRG 343
Query: 427 RPLLPFRFQNLGEMMILGRNDA 448
RP PF + + G M +GR A
Sbjct: 344 RPRAPFVYFDKGVMATVGRGRA 365
>gi|118587473|ref|ZP_01544898.1| pyridine nucleotide-disulfide dehydrogenase [Oenococcus oeni ATCC
BAA-1163]
gi|421186557|ref|ZP_15643948.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB418]
gi|118432123|gb|EAV38864.1| pyridine nucleotide-disulfide dehydrogenase [Oenococcus oeni ATCC
BAA-1163]
gi|399966899|gb|EJO01400.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB418]
Length = 390
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/430 (24%), Positives = 167/430 (38%), Gaps = 90/430 (20%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LG G+ GL R+ + +++L++++ L+E+ G +I+
Sbjct: 4 IVVLGAGYAGL----RVVRELVDHKANAKIVLINKNSYHYESTQLHEVAIGSKSPNDISL 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ N V F +D V + H V L+S V YD+LV LG
Sbjct: 60 NIRDVIGNQ-VDFIEDEVVKID-------------RHNKKVELKSKSAVSYDYLVTCLGF 105
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
E + + GA EF P ++ A ++L E R F+ ++ ++ +C G
Sbjct: 106 ESETFGIKGADEFGLPIIDIDTALVAKKRLEETLAR-FQSSHDEN-----DLHIAVCGAG 159
Query: 262 ----------------------TPGNR------EAALKVLSARKVQLVLGYFVRCIRRVG 293
P + EAA KVL +LV Y V ++ G
Sbjct: 160 FTSIEYIGELLHRLPDFVKRFNLPAEKIKIYCIEAAPKVLPMFDPKLV-DYAVNYLKNQG 218
Query: 294 -EF--EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350
EF E S+ + + GA+ I+ DK F A+ ++WT G K
Sbjct: 219 VEFYTETSITEVKKGAV--ISKDK-------------------AFNANTIIWTTGVKG-- 255
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
HV + R + L P F +GD SA+ GR P T Q++
Sbjct: 256 SHVINDSGYTQ-----KRNRVAVQNDLSSSDDPNEFIIGDVSAVPSPDGRFYPTTGQISV 310
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
QA A N+ A +N++ PF + +LG + LG + SF+ L G K
Sbjct: 311 AQATLAASNIIAKLNNQKTSPFTYHSLGTVCSLGPTNGVAELSFMGHWKLKG------HK 364
Query: 471 LAYLIRLPTD 480
+A L R+ D
Sbjct: 365 VAPLKRIVND 374
>gi|257416433|ref|ZP_05593427.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis ARO1/DG]
gi|257158261|gb|EEU88221.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis ARO1/DG]
Length = 403
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 164/390 (42%), Gaps = 54/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG E + +PG E A ++ A V + E + R ++ + + ++ + +C
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQE-QMRQYKATQNEEFLKIV-----VC 159
Query: 259 PTGTPG---------NRE--AALKVLSARKVQLVLGYFVRCIRR-VGEFEASVKQPESGA 306
G G N++ A + +SA ++Q+ Y V + R + F +
Sbjct: 160 GAGFTGIELLGSLVENKQKFAEIAGVSADQIQI---YCVEAVTRLLPMFNEKLANYGVQL 216
Query: 307 IPNIAADKNSDKYILELQP-AIKGLESQI-----FEADLVLWTVGSKPLLPHVEPPNNRL 360
+ + A K I E++P A+ +++ A ++WT G HV +
Sbjct: 217 LKDSAIHLLLGKPIKEIKPGAVVYQDNEAGDLAELSAKTIIWTTGVSG--SHV------V 268
Query: 361 HDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGW 418
D A RG+ L H ++ +GD SA+ D+ + RP P TAQ+A + A
Sbjct: 269 GDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKMGAHAAK 328
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
N+ A + PF F++ G + +G A
Sbjct: 329 NIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|424759361|ref|ZP_18187027.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
R508]
gi|402404819|gb|EJV37432.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
R508]
Length = 403
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 162/390 (41%), Gaps = 54/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVNEKMTTFIQGTVKTIDAATQ-------------TVALEGGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG E + +PG E A ++ A V + E + R ++ + + ++ + +C
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQE-QMRQYKATQNEEFLKIV-----VC 159
Query: 259 PTGTPGN-----------REAALKVLSARKVQLVLGYFVRCIRR-VGEFEASVKQPESGA 306
G G + A + +SA ++Q+ Y V + R + F +
Sbjct: 160 GAGFTGIELLGSLVENKPKFAEIAGVSADQIQI---YCVEAVTRLLPMFNEKLANYGVQL 216
Query: 307 IPNIAADKNSDKYILELQP-AIKGLESQI-----FEADLVLWTVGSKPLLPHVEPPNNRL 360
+ + A K I E++P A+ +++ A ++WT G HV +
Sbjct: 217 LKDSAIHLLLGKPIKEIKPGAVVYQDNEAGDLAELSAKTIIWTTGVSG--SHV------V 268
Query: 361 HDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGW 418
D A RG+ L H ++ +GD SA+ DS + RP P TAQ+A + A
Sbjct: 269 GDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDSETNRPYPTTAQIALKMGAHAAK 328
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
N+ A + PF F++ G + +G A
Sbjct: 329 NIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|21218715|ref|NP_624494.1| oxidoreductase [Streptomyces coelicolor A3(2)]
gi|5748620|emb|CAB53125.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
Length = 409
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 164/382 (42%), Gaps = 56/382 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K RI +LG G+ G Y A L + + D ++ +V+ FV + L++L +G+ A E
Sbjct: 2 KHRIVVLGAGYAGAYVAGTLARRLSRQDT--EITVVNAEPDFVQRLRLHQLSAGQ--AIE 57
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
AP+ ++ A TG++ RV + P + +A GG E G YD L+ +
Sbjct: 58 -APQLTEVFAGTGIRLRLARVTAVDPERQVVA---VADADGGDGHGELG----YDTLLYA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG+ VPG AE AF + A R+ ++L L RR+ E G V + V T
Sbjct: 110 LGSHVTTHGVPGVAEHAFDVAGRPSALRLRKRLDVLSRRD-----EGGSVLIVGVGLT-- 162
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI--AADKNS 316
E A ++ +R G V I R GE A Q +GA ++ A D+
Sbjct: 163 ------GIETATEIAESRP-----GLSVTLIAR-GELGA---QLSAGARRHLRQACDRLG 207
Query: 317 DKYI----LELQPAIKGL--ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQ 370
+ +E A + L + +D +WT G P L + G+
Sbjct: 208 ITVLEHTEVEAVEAARVLCADGTALASDATVWTAG------FAVSPIAAAGGLEVTETGR 261
Query: 371 AETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI----ND 426
D T+ HP ++A GDS+ + +GRPLP ++ A + G AAI
Sbjct: 262 IVVDRTMQSVSHPNVYAAGDSAYVVGDNGRPLP----MSCASAGYTGMQATAAIVGRLTG 317
Query: 427 RPLLPFRFQNLGEMMILGRNDA 448
R + + + LG + LGR DA
Sbjct: 318 RTIPNTKLEYLGNHISLGRRDA 339
>gi|403234296|ref|ZP_10912882.1| NADH dehydrogenase-like protein [Bacillus sp. 10403023]
Length = 394
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 156/393 (39%), Gaps = 60/393 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG G+GGL TAL L + + Q+ +V++ L+ L G I+
Sbjct: 4 EIVILGAGYGGLLTALTLRK--YASKAEAQITVVNKYPTHQLITELHRLAGGSTTERAIS 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L N + V V L G ++ YD LV++LG
Sbjct: 62 FPLTKLFKNQDINVVISEVTSFSVDKK-------------EVHLADGAVLSYDNLVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ +PG E +F ++EDA R+ + +E + E K A V I
Sbjct: 109 SQTGYFGIPGLEENSFVLKSVEDANRIYK---HIESKIASYAESKNPADATIV---IGGG 162
Query: 261 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVG-EF-EASVKQPESG-----AIPNIAAD 313
G G V ++ +F R+ G +F E +K E+G +P+
Sbjct: 163 GLTG----------VELVGEIVDHFPEVARKYGVDFNELDIKLVEAGPKILPVLPDNLIG 212
Query: 314 KNSDKYILELQPAIKGL-------------ESQIFEADLVLWTVGSKPLLPHVEPPNNRL 360
+ ++ + GL + EA+ +WT G LP V+
Sbjct: 213 RATESLAKRGVDFLTGLPVTGVEGNKISLKDGSTIEANTFVWT-GGVAALPVVQESGLEC 271
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPA-TAQVAFQQADFAGW 418
RG+A DE L K HP +F +GD+S +L GRPL A TAQ A+Q + G+
Sbjct: 272 D------RGKAVIDEYLRSKSHPEVFVVGDASVSLPADGGRPLYAPTAQNAWQMGETCGY 325
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
NL+A + + L F N G + LGR D +
Sbjct: 326 NLFAILKGQKLEEFSPINSGTLASLGRKDGVAT 358
>gi|255023086|ref|ZP_05295072.1| NADH dehydrogenase [Listeria monocytogenes FSL J1-208]
gi|422810419|ref|ZP_16858830.1| NADH dehydrogenase [Listeria monocytogenes FSL J1-208]
gi|378751537|gb|EHY62126.1| NADH dehydrogenase [Listeria monocytogenes FSL J1-208]
Length = 403
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 172/389 (44%), Gaps = 52/389 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ NT F +D V + + TV L++ + YD+L+++
Sbjct: 59 LMYPLDKVVNNTKTTFIQDTVVKINKEEK-------------TVTLDANGDISYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG+E + + G E+AF +++E ++ R + E K + TI
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKI--------RAHIEAQFAKWKTDPRDELLTII 157
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-------RCI----RRVGEFEASVKQPESGAI 307
G L L+ R +LV Y V C+ + + +F+A + G +
Sbjct: 158 VGGAGFTGIEFLGELTNRIPELVKEYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGVGVL 217
Query: 308 PNIAADKNSDKYILELQP-AIKGLESQI----FEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + + K + E +K ES+ +A ++W G + N+ +
Sbjct: 218 EDRGVEFHVGKPVKEATADGVKYAESENEVREIKAATIIWAAGVR--------GNSVIEA 269
Query: 363 LPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNL 420
A RG+ + + L V G+ I +GD S + + ++ RP P TAQ+A QQAD A NL
Sbjct: 270 SGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAAVNL 329
Query: 421 WAAIN-DRPLLPFRFQNLGEMMILGRNDA 448
+ + L F + G + LG NDA
Sbjct: 330 AKLVKGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|16801550|ref|NP_471818.1| hypothetical protein lin2488 [Listeria innocua Clip11262]
gi|423098531|ref|ZP_17086276.1| pyridine nucleotide-disulfide oxidoreductase [Listeria innocua ATCC
33091]
gi|16415010|emb|CAC97715.1| lin2488 [Listeria innocua Clip11262]
gi|370794989|gb|EHN62726.1| pyridine nucleotide-disulfide oxidoreductase [Listeria innocua ATCC
33091]
Length = 403
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 170/389 (43%), Gaps = 52/389 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLDAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ NT F +D V + + TV L++ + YD+L++
Sbjct: 59 LMYPLDKVVNNTKTTFIQDTVVKINKDEK-------------TVTLDANGDISYDYLLIG 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG+E + + G E+AF +++E ++ R + E K + TI
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKI--------RAHIEAQFAKWKTDPRDELLTII 157
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-------RCI----RRVGEFEASVKQPESGAI 307
G L L+ R +LV Y V C+ + + +F+A + G +
Sbjct: 158 VGGAGFTGIEFLGELTNRIPELVKEYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGVGVL 217
Query: 308 PNIAADKNSDKYILELQP-AIKGLESQI----FEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + + K + E +K ES+ +A ++W G + N+ +
Sbjct: 218 EDRGVEFHVGKPVKEATADGVKYAESETEVREIKAATIIWAAGVR--------GNSVIEA 269
Query: 363 LPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNL 420
A RG+ + + L V G+ I +GD S + + ++ RP P TAQ+A QQAD A NL
Sbjct: 270 SGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAAVNL 329
Query: 421 WAAIN-DRPLLPFRFQNLGEMMILGRNDA 448
+ + L F + G + LG NDA
Sbjct: 330 AKLVKGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|302557309|ref|ZP_07309651.1| NADH dehydrogenase [Streptomyces griseoflavus Tu4000]
gi|302474927|gb|EFL38020.1| NADH dehydrogenase [Streptomyces griseoflavus Tu4000]
Length = 509
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 109/440 (24%), Positives = 187/440 (42%), Gaps = 49/440 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PR I+G GF G TA L L + +++L++ ++ F++ P+L ++ +G ++
Sbjct: 3 RPRTVIVGAGFAGYRTAQTLSRLA---RGRAEIVLLNPTDYFLYLPLLPQVAAGILEPRR 59
Query: 139 IAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ + L + + DR+ L H GP GGT+ EYD LVL
Sbjct: 60 VTVSLSGTLPQVKLVLGESDRIDLDARQVHY--TGPEG--EGGTL--------EYDRLVL 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE---RLEEKGIVQAINVE 254
+ G+ KL +PG AE A F L +A + ++ R E ++ G A
Sbjct: 108 AAGSVNKLLPIPGVAEHAHGFRGLPEALYLRDHVT----RQVELAAATDDPGRCAA-RCT 162
Query: 255 TTICPTGTPGNREAALKVL----SARKVQLVLGYFVRCI------RRVGEFEASVKQPES 304
+ G G AA L R+ + G R + R + E + + +
Sbjct: 163 FVVVGAGYTGTEVAAHGQLFTDSQVRRHPMRTGMRPRWMLLDIADRVLPELDERLSRTAD 222
Query: 305 GAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 363
+ D + E P + + + + ++W VG +P +P L L
Sbjct: 223 TVLRERGVDVRMGTSVKEATPEGVLLTDGEFVDTHTLVWCVGVRP-----DPLAESL-GL 276
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNLW 421
P+ RG+ D L V G P +FA GD++A+ D G P TAQ A++Q N+
Sbjct: 277 PME-RGRLLVDPHLQVPGRPEVFACGDAAAVPDLEKPGSYTPMTAQHAWRQGRVCAHNIA 335
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
A+ D +R +++G ++ LG AA +P GV L G + + +L +P +
Sbjct: 336 ASFGDGERRAYRHKDMGFVVDLGGVKAAANPL---GVNLSGVAAGAVTRGYHLAAMPGN- 391
Query: 482 HRLKVGVSWLTKSAIDSVAL 501
R++V WL + + A+
Sbjct: 392 -RVRVAADWLLDAVLPRQAV 410
>gi|146343575|ref|YP_001208623.1| NADH dehydrogenase FAD-containing subunit transmembrane protein
[Bradyrhizobium sp. ORS 278]
gi|146196381|emb|CAL80408.1| Putative NADH dehydrogenase FAD-containing subunit transmembrane
protein [Bradyrhizobium sp. ORS 278]
Length = 424
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 113/446 (25%), Positives = 186/446 (41%), Gaps = 50/446 (11%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+G GFGGL RL ++ L+D+ +F+P+LY++ + + EIA
Sbjct: 11 VVIVGAGFGGLEATYRLAG------APVRITLIDRRNHHLFQPLLYQVATASLATSEIAW 64
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
L+ +DR ++ L N G VLL+ G V YD LVL+ GA
Sbjct: 65 PIRSLM--------RDRPEVTT----LFANVKGVDKAGRRVLLDDGADVSYDTLVLATGA 112
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTICPT 260
FA TLEDA + R+ L ER E + V PT
Sbjct: 113 RHAYFGHDEWEPFAPGLKTLEDATTLRRRILVAFERAEREIDPARRAAWMTFVIIGAGPT 172
Query: 261 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD--K 318
G L+ ++ R + EA V E+G P + D
Sbjct: 173 GVE---------LAGTIAEMARATLPPDFRSIDTHEARVVLIEAG--PRVLGGFPEDLSA 221
Query: 319 YILELQPAIKGLESQIFE------ADLVLW---TVGSKPLLPHVEPPNNRLHDL---PLN 366
Y + +I G+E + + AD V++ +V ++ ++ +R + P +
Sbjct: 222 YTQKSLESI-GVEVVLGQPVTECTADNVVYGGRSVATRTVIWAAGVRASRAAEWLGAPAD 280
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
G+ + L V GHP IFA+GD+ + G+P+P A A Q+ + + A +
Sbjct: 281 RAGRLQVAPDLTVPGHPEIFAIGDTVTVPAWDGKPVPGIAPAAKQEGRYVAQAIKARLAG 340
Query: 427 RPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 486
+ L PFR+ ++G + +G+ A + +++ L G + LA++ L +RL V
Sbjct: 341 QALPPFRYHHVGSLAQIGKRLAVIDFGWIK---LRGALAWWIWGLAHIYFLIGLRNRLSV 397
Query: 487 GVSWLTKSAIDSVA--LLQSTLTKVL 510
+SWL A D A L+ +KV+
Sbjct: 398 ALSWLWIHARDQRAARLITQGSSKVM 423
>gi|46908563|ref|YP_014952.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes serotype 4b str. F2365]
gi|47092974|ref|ZP_00230754.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes str. 4b H7858]
gi|217963505|ref|YP_002349183.1| NADH dehydrogenase ndh [Listeria monocytogenes HCC23]
gi|226224942|ref|YP_002759049.1| NADH dehydrogenase [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254826349|ref|ZP_05231350.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL J1-194]
gi|254854459|ref|ZP_05243807.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL R2-503]
gi|254933661|ref|ZP_05267020.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes HPB2262]
gi|254992245|ref|ZP_05274435.1| NADH dehydrogenase [Listeria monocytogenes FSL J2-064]
gi|300766228|ref|ZP_07076191.1| hypothetical protein LMHG_11335 [Listeria monocytogenes FSL N1-017]
gi|386009110|ref|YP_005927388.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes L99]
gi|386027722|ref|YP_005948498.1| putative respiratory NADH dehydrogenase [Listeria monocytogenes M7]
gi|386733077|ref|YP_006206573.1| NADH dehydrogenase [Listeria monocytogenes 07PF0776]
gi|404281947|ref|YP_006682845.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC2755]
gi|404287760|ref|YP_006694346.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750734|ref|YP_006674200.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes ATCC 19117]
gi|405753599|ref|YP_006677064.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC2378]
gi|405756504|ref|YP_006679968.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC2540]
gi|406705127|ref|YP_006755481.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes L312]
gi|417316179|ref|ZP_12102831.1| NADH dehydrogenase [Listeria monocytogenes J1816]
gi|417318376|ref|ZP_12104961.1| NADH dehydrogenase [Listeria monocytogenes J1-220]
gi|422410658|ref|ZP_16487619.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria monocytogenes FSL F2-208]
gi|424715207|ref|YP_007015922.1| NADH dehydrogenase-like protein yumB [Listeria monocytogenes
serotype 4b str. LL195]
gi|424824143|ref|ZP_18249156.1| hypothetical protein LMOSA_3580 [Listeria monocytogenes str. Scott
A]
gi|46881835|gb|AAT05129.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes serotype 4b str. F2365]
gi|47018628|gb|EAL09381.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes str. 4b H7858]
gi|217332775|gb|ACK38569.1| NADH dehydrogenase ndh [Listeria monocytogenes HCC23]
gi|225877404|emb|CAS06118.1| Putative NADH dehydrogenase [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|258607860|gb|EEW20468.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL R2-503]
gi|293585224|gb|EFF97256.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes HPB2262]
gi|293595589|gb|EFG03350.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL J1-194]
gi|300513044|gb|EFK40128.1| hypothetical protein LMHG_11335 [Listeria monocytogenes FSL N1-017]
gi|307571920|emb|CAR85099.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes L99]
gi|313607088|gb|EFR83607.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria monocytogenes FSL F2-208]
gi|328465259|gb|EGF36516.1| NADH dehydrogenase [Listeria monocytogenes J1816]
gi|328471529|gb|EGF42416.1| NADH dehydrogenase [Listeria monocytogenes J1-220]
gi|332312823|gb|EGJ25918.1| hypothetical protein LMOSA_3580 [Listeria monocytogenes str. Scott
A]
gi|336024303|gb|AEH93440.1| putative respiratory NADH dehydrogenase [Listeria monocytogenes M7]
gi|384391835|gb|AFH80905.1| NADH dehydrogenase [Listeria monocytogenes 07PF0776]
gi|404219934|emb|CBY71298.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes ATCC 19117]
gi|404222799|emb|CBY74162.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC2378]
gi|404225704|emb|CBY77066.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC2540]
gi|404228582|emb|CBY49987.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC2755]
gi|404246689|emb|CBY04914.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406362157|emb|CBY68430.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes L312]
gi|424014391|emb|CCO64931.1| NADH dehydrogenase-like protein yumB [Listeria monocytogenes
serotype 4b str. LL195]
Length = 403
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 172/389 (44%), Gaps = 52/389 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ NT F +D V + + TV L++ + YD+L+++
Sbjct: 59 LMYPLDKVVNNTKTTFIQDTVVKINKDEK-------------TVTLDANGDISYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG+E + + G E+AF +++E ++ R + E K + TI
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKI--------RAHIEAQFAKWKTDPRDELLTII 157
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-------RCI----RRVGEFEASVKQPESGAI 307
G L L+ R +LV Y V C+ + + +F+A + G +
Sbjct: 158 VGGAGFTGIEFLGELTNRIPELVKEYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGVGVL 217
Query: 308 PNIAADKNSDKYILELQP-AIKGLESQI----FEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + + K + E +K ES+ +A ++W G + N+ +
Sbjct: 218 EDRGVEFHVGKPVKEATADGVKYAESENEVREIKAATIIWAAGVR--------GNSVIEA 269
Query: 363 LPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNL 420
A RG+ + + L V G+ I +GD S + + ++ RP P TAQ+A QQAD A NL
Sbjct: 270 SGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAAVNL 329
Query: 421 WAAIN-DRPLLPFRFQNLGEMMILGRNDA 448
+ + L F + G + LG NDA
Sbjct: 330 AKLVKGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|78355689|ref|YP_387138.1| NADH dehydrogenase (ubiquinone) [Desulfovibrio alaskensis G20]
gi|78218094|gb|ABB37443.1| NADH dehydrogenase (ubiquinone) [Desulfovibrio alaskensis G20]
Length = 428
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 156/393 (39%), Gaps = 54/393 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ R+ + GGGF G++ RL DK ++LVD++ F P+LY++ + E++
Sbjct: 7 NSRTRVVVAGGGFAGVWAVRRLAR-----DKNLDIILVDRNNYHTFLPLLYQVAAAELEP 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA + P+ H + + VL G + +D LV
Sbjct: 62 GQIAYPLRAIFRK-------------YPNVHFVIGDVRSIDMKNKVLHTDGPHIPFDKLV 108
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVET 255
+++G+ VPGA + F LE A + + +S E+ ER ++ + T
Sbjct: 109 VAMGSFTAFYGVPGADKHCFRLKNLEQAITLRNHIVSCFEQATHERNPDR----KDRILT 164
Query: 256 TICPTGTPGNREAA-----------------LKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
G P E A L AR V L G + + F
Sbjct: 165 YTVVGGGPTGVEYAGALAELIRQPLTKDFPTLNTGQARVVLLEAGDGL-----LAGFPDH 219
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLE-SQIFEADLVLWTVGSKPLLPHVEPPN 357
+++ + ++ D + + + P LE S + V+WT G + H
Sbjct: 220 LRRYAFERLTHMGVDVRLNAKVTAVTPDSVELEGSSPLRTETVVWTAGVQG---HALAGQ 276
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
LP G+ TL V+GHP +F GD + + S P P A A QQ A
Sbjct: 277 ---MGLPTGRGGRVPVLPTLQVEGHPDVFVAGDMALPQGDS--PAPLIAPNAIQQGALAA 331
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
N+ AA+ RPL FR+++ G M +GR A V
Sbjct: 332 DNIRAALAGRPLRAFRYRDKGSMATIGRAAAVV 364
>gi|422870155|ref|ZP_16916653.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1467]
gi|329568425|gb|EGG50232.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1467]
Length = 403
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 163/390 (41%), Gaps = 54/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LV+++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVNRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG E + +PG E A ++ A V + E + R ++ + + ++ + +C
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQE-QMRQYKATQNEEFLKIV-----VC 159
Query: 259 PTGTPGN-----------REAALKVLSARKVQLVLGYFVRCIRR-VGEFEASVKQPESGA 306
G G + A + +SA ++Q+ Y V + R + F +
Sbjct: 160 GAGFTGIELLGSLVENKPKSAEIAGVSADQIQI---YCVEAVTRLLPMFNEKLANYGVQL 216
Query: 307 IPNIAADKNSDKYILELQP-AIKGLESQI-----FEADLVLWTVGSKPLLPHVEPPNNRL 360
+ + A K I E++P A+ +++ A ++WT G HV +
Sbjct: 217 LKDSAIHLLLGKPIKEIKPGAVVYQDNEAGDLAELSAKTIIWTTGVSG--SHV------V 268
Query: 361 HDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGW 418
D A RG+A L H ++ +GD SA+ D+ + RP P TAQ+A + A
Sbjct: 269 GDSGFEARRGRAMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKMGAHAAK 328
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
N+ A + PF F++ G + +G A
Sbjct: 329 NIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|170737889|ref|YP_001779149.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cenocepacia MC0-3]
gi|169820077|gb|ACA94659.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia cenocepacia MC0-3]
Length = 430
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 156/392 (39%), Gaps = 52/392 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + Q+ +VD+S ++KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGRSGRA-QITVVDRSPTHIWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F + G + +K L + G + G V+ L EYD L+L+LG
Sbjct: 65 VIFLAHARDHGYTYQPGELKGLDRTRRRVQLGEIRSQDGDVVIDAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ VPG E + + + A + L R+ R E I
Sbjct: 123 SQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEP--------FRVAIVGA 174
Query: 261 GTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
G G AA L+V A + +L L R + F + + I
Sbjct: 175 GATGVELAAELSRLLEVAQAYGDDTVRERLQLTLLESGPRILNAFPPKISASAQRRLEQI 234
Query: 311 -----------AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN-- 357
+AD N Y + EADL++W G V+ P+
Sbjct: 235 GFRVLTSTRVTSADANGFHY----------GDGSFAEADLMVWAAG-------VKAPDFM 277
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFA 416
L L N Q TL G +FA+GD S L D RPLP TAQVA QQA+
Sbjct: 278 QALGGLDTNRANQIVVGPTLQATGDEHVFAIGDCGSLLPDGQERPLPPTAQVATQQAEHL 337
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+L A ++ P+ PF F + G ++ + DA
Sbjct: 338 AKHLPAWLDGTPIPPFAFHDFGALVSISDYDA 369
>gi|34496447|ref|NP_900662.1| NAD(P)H2 dehydrogenase [Chromobacterium violaceum ATCC 12472]
gi|34102300|gb|AAQ58666.1| NAD(P)H2 dehydrogenase [Chromobacterium violaceum ATCC 12472]
Length = 438
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 117/415 (28%), Positives = 169/415 (40%), Gaps = 43/415 (10%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGG GGL A RL + + Q++LVD S ++KP+L+E+ +G ++ E
Sbjct: 9 PRIVIVGGGAGGLELATRLGRTLGAR-HRAQIVLVDGSPTHIWKPLLHEVATGALNTGED 67
Query: 140 APRFADLLANTGVQF-------FKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
+ G F + + + S G +G LL + Y
Sbjct: 68 EVNYFAHGYRNGYDFEFGYMQGLDQKRRTIRLSAIPGSDGQ---------LLSPEREIGY 118
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLE--------- 243
DWLV+++GAE PG AE A +T DA ++ ++ E R E
Sbjct: 119 DWLVIAVGAEANDFGTPGVAEHAMFLNTPNDAEKLRHRVLEQAFRASSGEEPARALSIAI 178
Query: 244 ----EKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
G+ A + T+C G R L +V++ + I S
Sbjct: 179 VGGGATGVELAAELNHTMCELHHYGAR------LQPERVRISVIEAADRILAAAPPSLSA 232
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
E A NI S +E S++ EAD+ +W G K
Sbjct: 233 YAEEQLAGKNIRVLTGSRVAAVEADGVALAGGSKV-EADITVWAAGVK-----ASAWLAG 286
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGW 418
L L N Q D L G I+A+GD +A D SGR L ATAQVA QQA +
Sbjct: 287 LDGLETNRVNQLVVDTRLHCAGGDCIYAMGDCAAAPDGDSGRMLAATAQVAHQQARYLAD 346
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
L ++D+P PF F+ G M+ LG++ A S + V G D + KL Y
Sbjct: 347 ELARRLDDKPARPFVFKPQGMMVSLGKHTAVGSLAAVVGPKRDYHVEGRGAKLIY 401
>gi|421469090|ref|ZP_15917578.1| NADH dehydrogenase [Burkholderia multivorans ATCC BAA-247]
gi|400230603|gb|EJO60370.1| NADH dehydrogenase [Burkholderia multivorans ATCC BAA-247]
Length = 430
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 151/382 (39%), Gaps = 32/382 (8%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGKSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F G + ++ L G + G VL L EYD L+L+LG
Sbjct: 65 VIFVAHACEHGYTYQPGELQGLDRRRRRVRLGEIRSQDGALVLEAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ VPG E + + A + L R+ R E + I
Sbjct: 123 SQANDFGVPGVREHCYFIDSQRQAEAFNEALRMRVFRSVARDEA--------LRVAIVGA 174
Query: 261 GTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
G G AA L+V A + +L L R + F + + I
Sbjct: 175 GATGVELAAELSRLLEVAQAYGDATVRERLQLTLLESGPRILAAFPPKISASAQQQLERI 234
Query: 311 AADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNA 367
+ + P + EADL++W G V+ P L L N
Sbjct: 235 GFRVLTSTRVTSAAPNGFHYGDDSFAEADLMVWAAG-------VKAPEFMQALGGLDTNR 287
Query: 368 RGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
Q TL IFA+GD +S L D RPLP TAQVA QQA+ +L A ++
Sbjct: 288 ANQIVVGPTLQATADEHIFAIGDCASLLPDGQERPLPPTAQVATQQAEHLAKHLPAWLDG 347
Query: 427 RPLLPFRFQNLGEMMILGRNDA 448
+P+ F F + G ++ L DA
Sbjct: 348 KPMPAFAFHDFGALVSLSDYDA 369
>gi|386772391|ref|ZP_10094769.1| NADH dehydrogenase, FAD-containing subunit [Brachybacterium
paraconglomeratum LC44]
Length = 479
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 106/417 (25%), Positives = 170/417 (40%), Gaps = 74/417 (17%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+GGGF G L L D + +V L+D++ F+P+LY++ + ++ ++
Sbjct: 21 PHVVIVGGGFAGANAVLGLR------DARVRVTLIDRNVYKTFQPLLYQVATAGLNPGDV 74
Query: 140 APRFADL-LANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI----VEYDW 194
L L +++ + V + P + V L G + YD+
Sbjct: 75 TMFLRGLSLKVPNMRYRQGEVVGVDPERKV-------------VTLNEGQRGDQELSYDY 121
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINV 253
LVL+ GA PGA E A P T + + DR SELER + E G+
Sbjct: 122 LVLANGATTTYFGTPGAEEHAMPMYTRAQSLAIRDRVFSELERSS----REAGVTHD--- 174
Query: 254 ETTICPTGT-PGNREAALKVLSARKVQLVLGY------------FVRCIRRVGEFEASVK 300
+ +C G P E A + R +L + Y R + EF +
Sbjct: 175 KLHVCIVGGGPTGVEIAGALADFRMQELDILYPEMDPGTLQLTVLQRGDELLKEFSDKYR 234
Query: 301 QPESGAIPNIAADKNSDK-YILELQPAIKGL--------ESQIFEADLVLWTVGSKPLLP 351
Q AAD+ D+ +L L +K + + I E+D+ +W G
Sbjct: 235 Q--------YAADELRDRGVVLRLGHGVKEVGYDHVILDDGSILESDITIWAAGVAI--- 283
Query: 352 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 411
P LP ++RG+ D+ L VKG P ++A GD +A ++ LP AQ A Q
Sbjct: 284 ---PEAVSRWGLPQDSRGRIAVDDHLQVKGMPGVYAAGDVAAQDEA----LPQLAQPAIQ 336
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 468
++ A + + F + NLG M +GR+ A + G L G +G +A
Sbjct: 337 TGSAVAKSIAADVKGKQRPTFTYTNLGTMATIGRHAAIAEIPVLGG--LSGSLGWAA 391
>gi|254250287|ref|ZP_04943607.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia
cenocepacia PC184]
gi|124876788|gb|EAY66778.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia
cenocepacia PC184]
Length = 430
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 156/392 (39%), Gaps = 52/392 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + Q+ +VD+S ++KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGRSGRA-QITVVDRSPTHIWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F + G + +K L + G + G V+ L EYD L+L+LG
Sbjct: 65 VIFLAHARDHGYTYQPGELKGLDRARRRVQLGEIRSQDGDVVIDAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ VPG E + + + A + L R+ R E I
Sbjct: 123 SQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEP--------FRVAIVGA 174
Query: 261 GTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
G G AA L+V A + +L L R + F + + I
Sbjct: 175 GATGVELAAELSRLLEVAQAYGDDTVRERLQLTLLESGPRILNAFPPRISASAQRRLEQI 234
Query: 311 -----------AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN-- 357
+AD N Y + EADL++W G V+ P+
Sbjct: 235 GFRVLTSTRVTSADANGFHY----------GDGSFAEADLMVWAAG-------VKAPDFM 277
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFA 416
L L N Q TL G +FA+GD S L D RPLP TAQVA QQA+
Sbjct: 278 QALGGLDTNHANQIVVGPTLQATGDEHVFAIGDCGSLLPDGQERPLPPTAQVATQQAEHL 337
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+L A ++ P+ PF F + G ++ + DA
Sbjct: 338 AKHLPAWLDGTPIPPFAFHDFGALVSISDYDA 369
>gi|392396417|ref|YP_006433018.1| NADH dehydrogenase, FAD-containing subunit [Flexibacter litoralis
DSM 6794]
gi|390527495|gb|AFM03225.1| NADH dehydrogenase, FAD-containing subunit [Flexibacter litoralis
DSM 6794]
Length = 451
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 107/409 (26%), Positives = 175/409 (42%), Gaps = 44/409 (10%)
Query: 58 DLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117
D + SE S+ + P K RI I+GGGF GL + +L S+ Q++++D+
Sbjct: 3 DSAMNSELNFTSELHI-PAANKSRIVIIGGGFAGLELSKKLRSV------DAQIVMIDRY 55
Query: 118 ERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQF-FKDRVKLLCPSDHLGVNGPMAC 176
F+P+LY++ + ++A IA +L ++ + F RV + H + +
Sbjct: 56 NFHTFQPLLYQVATAGLEADAIAGPLRKVLKSSDSKSDFYFRVATVSEIHH---DENIID 112
Query: 177 THGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER 236
T+ GT+ YD+LV++ G++ E +F + A + L
Sbjct: 113 TNLGTL--------HYDYLVIANGSKTNFYGNKEIEEKSFALKQVPQALAIRNHL----L 160
Query: 237 RNFERLEEKGIVQAINVE----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 292
+NFE+ + +VQ I + + G P E A L K+ ++ + R
Sbjct: 161 KNFEKAQ---LVQTIEEQHALMNVVIVGGGPTGVEVA-GALGELKLHVLPKDYPELDFRR 216
Query: 293 GEFEASVKQPE--SGAIPNIAADKNSDKYILELQPAI-KGLESQIFEADLVLWTVG---- 345
E P +G N + + ++ Y+ E I KG+ + F+ + V + G
Sbjct: 217 MEIHLVEASPRLLNGMTDN--SSRKAEDYLKEFTVQIWKGVSVKSFDGNHVELSNGKNLA 274
Query: 346 SKPLLPHVEPPNNRLHDLPLNARGQAE---TDETLCVKGHPRIFALGDSSAL-RDSSGRP 401
S L+ N + LP Q DE VKG IFALGD +A+ + R
Sbjct: 275 STTLVWAAGVTGNLIKGLPEEVVLQGNRIIVDEFNRVKGIDNIFALGDIAAMVSEDFPRG 334
Query: 402 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
P A VA QQ G NL +N + + PF++ N G M +GRN A V
Sbjct: 335 FPMLAPVAMQQGKTLGDNLKRMLNKKEMKPFKYFNKGSMATVGRNRAVV 383
>gi|384134606|ref|YP_005517320.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|339288691|gb|AEJ42801.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
Length = 395
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 150/386 (38%), Gaps = 68/386 (17%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I ILG G+GGL AL L D LV++ FK +L+E+ D A
Sbjct: 6 IVILGAGYGGLAVALEL------DRHGIPFTLVNREPYHTFKTLLHEVAGARHDPHTYAL 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
DL + VK L SD L + G + YD L+++LG+
Sbjct: 60 SLEDLFHRKTSEIVIAEVKNLRLSDKL--------------VETDGATLAYDTLIVALGS 105
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
+PG AE F +L A + + R ER ++ G I++ + G
Sbjct: 106 RTATFGLPGVAEHTFRLDSLLAAMELHHHVE----RELERCQQTG--DPIHLRVLVAGGG 159
Query: 262 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI-------PNI---- 310
G V+L+ + +RV E V G I P++
Sbjct: 160 LTG-------------VELIGEWADWLPKRVRELGLPVSDLRLGLIHAHAEILPDVDHQL 206
Query: 311 ---AADKNSDKYI-LELQPAIKGLESQIF--------EADLVLWTVGSKPLLPHVEPPNN 358
A K ++ + L L + G E Q + EA ++WT G + P
Sbjct: 207 RAVAQTKLVERGVELILNERVAGAEPQAYRLASGRKLEAGTLVWTGGVEA------PALL 260
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
+ LP++AR + + +E L +G ++ +GD + D+ G LP T QVA Q G
Sbjct: 261 KEAGLPVDARNRVDVNEFLMARGLADVYVIGDCARFTDARGNVLPPTGQVAEQMGHHLGA 320
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILG 444
NL RP LPF + + G + LG
Sbjct: 321 NLVRRAQGRPPLPFVYHDHGMVASLG 346
>gi|347753445|ref|YP_004861010.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus coagulans 36D1]
gi|347585963|gb|AEP02230.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus coagulans 36D1]
Length = 393
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 158/410 (38%), Gaps = 101/410 (24%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL +AL + +DD + +V++ L+ L +G V ++
Sbjct: 4 KIVILGAGYGGLLSALSAREYLSKDD--AAITVVNRVPDHQIITELHRLAAGGVSEKRVS 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L V D V + P V L SG + YD LV++LG
Sbjct: 62 LPLRKLFKGKDVDVQVDEVTKISPDSK-------------EVSLGSGFKLNYDVLVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK-------------GI 247
+E +PG E +F +++DA R+ + E + + + K GI
Sbjct: 109 SETAFFGIPGLEENSFLLKSVDDAKRIHAHI-ESCLAQYAKTKNKADATFVVGGGGLTGI 167
Query: 248 -----------------------VQAINVET--TICPTGTPGNREAALKVLSARKVQLVL 282
+ I VE +I P P E A K L AR VQ
Sbjct: 168 ELVGELADKVPVWSKKFAIDPSEISLICVEAAPSILPNFAPNLIERATKSLEARGVQFFT 227
Query: 283 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 342
G IP N ++EL+ + Q E ++W
Sbjct: 228 G-----------------------IPVTKFQDN----VVELK------DGQKIETKTLVW 254
Query: 343 TVGSKPLLPHVEPPNNRL---HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 399
T G + NR+ + +N RG+A + L HP +F GDS+ + S G
Sbjct: 255 TGGVQ---------GNRVVANSGIEVN-RGRATVNAFLQSTSHPDVFVAGDSAVVFPSEG 304
Query: 400 -RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
RP P TAQ+++Q + G+NL+A + + F+ N G + LGR DA
Sbjct: 305 ARPYPPTAQMSWQMGELIGYNLYAYLKGGKMQTFQPVNSGTLASLGRKDA 354
>gi|225874047|ref|YP_002755506.1| NADH dehydrogenase [Acidobacterium capsulatum ATCC 51196]
gi|225793503|gb|ACO33593.1| NADH dehydrogenase [Acidobacterium capsulatum ATCC 51196]
Length = 465
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 96/396 (24%), Positives = 164/396 (41%), Gaps = 61/396 (15%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ ++PR+ I+GGGF G + A L L V +VD+ F F+P+LY++ +
Sbjct: 14 EGRRPRVLIVGGGFAGTHAAKALAEL------PVDVTVVDRRNHFTFQPLLYQVALAVLS 67
Query: 136 AWEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+IA +L N V+ D V +GV+ + S + ++YD+
Sbjct: 68 PADIAAPIRTILRNAKNVEVLMDEV--------VGVD-----LEKRQAMFRSRVAMDYDY 114
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL---SELERRNFERLEEKGIVQAI 251
LV++ GA AE A T+E+A + R++ EL R ++ E G +
Sbjct: 115 LVVATGATHSYFGNDHWAEVAPGLKTVENAIEIRRRVLLAFELAER---QMLETGSHPPL 171
Query: 252 N-VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--AIP 308
N V PTG L+ + Y R + +A V E G +P
Sbjct: 172 NFVIVGAGPTGVE---------LAGAITDIAKHYMRHDFRHIDPTKARVLLIEGGPRVLP 222
Query: 309 NIAADKN---------------SDKYILELQPAIKGL-ESQIFEADLVLWTVGSKPLLPH 352
+ D + +++ + ++QP + ++Q +A + LW G
Sbjct: 223 SYPEDLSKRAVAQLKGLGVEVYTNRKVSDIQPGYVMVGDNQKIDAVVTLWAAGV------ 276
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
P +L + + RG ++TL +GHP +F GD + + G +P AQ A Q
Sbjct: 277 TASPLGKLLGVETDKRGAVMVNQTLNPEGHPELFVCGDLAHF-EQDGAQVPGVAQPAMQM 335
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
D + A + +P FR+ + G+M +GR A
Sbjct: 336 GDHVARMIEADLAGKPRKAFRYFDKGDMATIGRQAA 371
>gi|386759793|ref|YP_006233010.1| hypothetical protein MY9_3221 [Bacillus sp. JS]
gi|384933076|gb|AFI29754.1| YumB [Bacillus sp. JS]
Length = 419
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 164/387 (42%), Gaps = 46/387 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 18 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D V + + V+L +G + +YD+LV+
Sbjct: 76 CRYQIKDVINQSRVNFVQDTVTAIKIDEK-------------KVVLANGEL-QYDYLVIG 121
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LGA P+ + G E+AFP + + + R+ R+ EL+ + EK + TI
Sbjct: 122 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDR-----LTIV 175
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVK-----QPESGAIPNIAA 312
G L L+AR +L Y V R + R+ EA+ PE
Sbjct: 176 VGGAGFTGIEFLGELAARVPELCKEYDVDRSLVRIVCVEAAPTVLPGFDPELVDYAVHYL 235
Query: 313 DKNSDKY-----ILELQP-----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
++N ++ + E P K E + ++ V+W G + P VE
Sbjct: 236 EENGIEFKIGTAVQECTPEGVRVGKKDEEPEQIKSQTVVWAAGVRG-HPIVEEAGFE--- 291
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLW 421
N RG+ + + L GH +F LGDSS + + + RP P TAQ+A QQ NL
Sbjct: 292 ---NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNEDTERPYPPTAQIAMQQGLTVAKNLG 348
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDA 448
I L F+ G + LG ++A
Sbjct: 349 RLIKGGELEEFKPDIKGTVASLGEHNA 375
>gi|359777615|ref|ZP_09280894.1| putative oxidoreductase [Arthrobacter globiformis NBRC 12137]
gi|359305024|dbj|GAB14723.1| putative oxidoreductase [Arthrobacter globiformis NBRC 12137]
Length = 413
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 103/430 (23%), Positives = 179/430 (41%), Gaps = 44/430 (10%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ ++GGGF G+ A +L K +VLL+D + F+P+LY++ + ++ +A
Sbjct: 6 QVIVVGGGFAGMTAAEQL------GRKGVRVLLIDANNYHQFQPLLYQVAASQIGVSAVA 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ +T V++L V + T TV G + LV++ G
Sbjct: 60 RPLRSVFRST------KSVRVLTAE----VTAIDSATR--TVTTIDGSQYQSKILVVAAG 107
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFERLEEKGIVQAINVETTICP 259
A P PGA E A+P ++ DA R+ L+ L+R + + G + V
Sbjct: 108 AVPNFFNTPGAEEHAYPLYSVADATRLSTALTTALDRADRAK---AGRADVVVVGGGPTG 164
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK----- 314
T G +K L + G RC + + +V P S D+
Sbjct: 165 VETAGALAENIKYLVPKYFSS--GLAARCRVHLVDMLPNVLMPFSAKSQAYTRDRLIKLG 222
Query: 315 ---NSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD--LPLNAR 368
+ + + E++ + + I A +V+W G K + D LP
Sbjct: 223 VQLHMGQGVTEVRADGVTLADGTIIPAQIVVWAGGLKA--------GKIIADSGLPQGKG 274
Query: 369 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
G+ + L V G ++ LGD++ + D++G LP VA Q +A N+ A +
Sbjct: 275 GRIDVLPDLTVPGAEGVYVLGDAANITDATGAKLPQLGSVAEQSGKWAARNIHADLTGGT 334
Query: 429 LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGV 488
PF + + G M ++GR AAV+ + + L GP+ + +L LP + +++
Sbjct: 335 RQPFFYWDKGYMAMVGRG-AAVAELGRKRIQLQGPLAFLSWLGVHLALLPGTQQKVRALS 393
Query: 489 SWLTKSAIDS 498
SWLT I S
Sbjct: 394 SWLTGYVIHS 403
>gi|161520473|ref|YP_001583900.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia multivorans ATCC 17616]
gi|189353336|ref|YP_001948963.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616]
gi|160344523|gb|ABX17608.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia multivorans ATCC 17616]
gi|189337358|dbj|BAG46427.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616]
Length = 430
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 152/382 (39%), Gaps = 32/382 (8%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGKSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F G + ++ L + G + G VL L EYD L+L+LG
Sbjct: 65 VIFVAHACEHGYTYQPGELQGLDRTRRRVRLGEIRSQDGAVVLEAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ VPG E + + A + L R+ R E + I
Sbjct: 123 SQANDFGVPGVREHCYFIDSQRQAEAFNEALRMRVFRSVARDEA--------LRVAIVGA 174
Query: 261 GTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
G G AA L+V A + +L L R + F + + I
Sbjct: 175 GATGVELAAELSRLLEVAQAYGDATVRERLQLTLLESGPRILAAFPPKISASAQQQLERI 234
Query: 311 AADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNA 367
+ + P + EADL++W G V+ P L L N
Sbjct: 235 GFRVLTSTRVTSAAPNGFHYGDDSFAEADLMVWAAG-------VKAPEFMQALGGLDTNR 287
Query: 368 RGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
Q TL IFA+GD +S L D RPLP TAQVA QQA+ +L A ++
Sbjct: 288 ANQIVVGPTLQATADEHIFAIGDCASLLPDGQERPLPPTAQVATQQAEHLAKHLPAWLDG 347
Query: 427 RPLLPFRFQNLGEMMILGRNDA 448
+P+ F F + G ++ L DA
Sbjct: 348 KPMPAFAFHDFGALVSLSDYDA 369
>gi|107025971|ref|YP_623482.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cenocepacia AU 1054]
gi|116692845|ref|YP_838378.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cenocepacia HI2424]
gi|105895345|gb|ABF78509.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cenocepacia AU 1054]
gi|116650845|gb|ABK11485.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia cenocepacia HI2424]
Length = 430
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 156/392 (39%), Gaps = 52/392 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + Q+ +VD+S ++KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGRSGRA-QITVVDRSPTHIWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F + G + +K L + G + G V+ L EYD L+L+LG
Sbjct: 65 VIFLAHARDHGYTYQPGELKGLDRTRRRVQLGEIRSQDGDVVIDAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ VPG E + + + A + L R+ R E I
Sbjct: 123 SQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEP--------FRVAIVGA 174
Query: 261 GTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
G G AA L+V A + +L L R + F + + I
Sbjct: 175 GATGVELAAELSRLLEVAQAYGDDTVRERLQLTLLESGPRILNAFPPRISASAQRRLEQI 234
Query: 311 -----------AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN-- 357
+AD N Y + EADL++W G V+ P+
Sbjct: 235 GFRVLTSTRVTSADANGFHY----------GDGSFAEADLMVWAAG-------VKAPDFM 277
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFA 416
L L N Q TL G +FA+GD S L D RPLP TAQVA QQA+
Sbjct: 278 QALGGLDTNRANQIVVGPTLQATGDEHVFAIGDCGSLLPDGQERPLPPTAQVATQQAEHL 337
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+L A ++ P+ PF F + G ++ + DA
Sbjct: 338 AKHLPAWLDGTPIPPFAFHDFGALVSISDYDA 369
>gi|402827544|ref|ZP_10876593.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Sphingomonas sp. LH128]
gi|402258933|gb|EJU09247.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Sphingomonas sp. LH128]
Length = 438
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 118/444 (26%), Positives = 189/444 (42%), Gaps = 43/444 (9%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K +I I+GGG GL A RL + + ++LVD++ ++KP+L+E+ +G +DA
Sbjct: 4 QKTQIVIVGGGAAGLELATRLGARYGR--AHHDIILVDENRTHIWKPLLHEVAAGSLDAN 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ G ++FK + + + P+ G V+ L YD+LVL
Sbjct: 62 LDEVGYRGHCHKWGYRYFKGTLAGIDRAAQRIDLAPILDDRGNEVVGAQQL--RYDYLVL 119
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETT 256
+ G+ PG E DA R DR L + R + L ++ V +
Sbjct: 120 AYGSVTNDFGTPGVRENCMFLDRRADADRFRDRLLDQCLRVSRAMLVDE--ASDARVRVS 177
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIPNIA 311
I G G E A ++ +A LGY+ + G + ++ E+G A+P
Sbjct: 178 IVGGGATGV-ELAAELFNAADA---LGYYGLEVFDRGRLKVTL--VEAGPRILPALPERL 231
Query: 312 ADKNSDKY------------ILELQPA--IKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
A+ D+ I+E A I G + ++ EADL +W G K +P
Sbjct: 232 AESARDELQNLGVRVRTATPIVESTSAGMITG-DGELIEADLQVWAAGVK-----AKPIT 285
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQADFA 416
L L L+ GQ TL P+IFALGD + + RP+P AQ A Q A A
Sbjct: 286 GGLDGLELSRSGQVVVSPTLQSVTDPKIFALGDCAFCMLPGRDRPIPPRAQAAHQMAATA 345
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
NL ++ +PL F +++ G ++ L R + + G + G + R LA +I
Sbjct: 346 FDNLRRLMDGKPLRDFDYRDRGSLVSLSRFS---TVGTLMGNLVGGRMAVEGR-LARMIY 401
Query: 477 LPTDEHRLKVGVSWLTKSAIDSVA 500
L L WL +A+ +V
Sbjct: 402 LSLYRMHLIAIHGWLKGTALIAVG 425
>gi|27262346|gb|AAN87454.1| NADH dehydrogenase [Heliobacillus mobilis]
Length = 432
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/399 (25%), Positives = 161/399 (40%), Gaps = 70/399 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPRI +LG G+ G+ T RL++L+ D+ +++LV++ L+E+ +G D
Sbjct: 18 KPRIVVLGAGYAGILTTRRLQNLLSSDE--AEIVLVNKHNYHYLTTWLHEVAAGTGDDDR 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I + D++ V KD V + +H V+L G + YD+LV++
Sbjct: 76 ITIQIKDVIDTDRVHLIKDTVLEVQKEEH-------------RVILSHGEALIYDYLVVA 122
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG EP +PG + A ++ A ++ K+ L + +E+ E
Sbjct: 123 LGFEPATFGIPGIMKHALTIRSMNSARKIRHKIEALFADFADSNDEQ--------EKLTF 174
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD- 317
G G A ++ ++ + RRV A P I A + D
Sbjct: 175 IVGGAGFTGIEFAAELAERIPVLCEQYAVDPRRVQVLNVE-------AAPGILAGFDPDL 227
Query: 318 ----KYILE-------LQPAIKGLESQ-----------IFEADLVLWTVGSKPLLPHVEP 355
K LE L IK ++ Q E+ V+WT G +
Sbjct: 228 ADYSKQSLERLGVEFRLSTRIKSVDPQGVTLLTEAGEERIESATVIWTGGVQ-------- 279
Query: 356 PNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQA 413
N+ + A RG+ E L + G+ +F LGD SA D +GRP P TAQ+A Q+
Sbjct: 280 GNSVVCGSAFEAQRGRIPAGEDLRIPGYDNVFVLGDCSAFLDKGTGRPYPPTAQLAILQS 339
Query: 414 DFAGWNLWAAIND----RPLLPFRFQNLGEMMILGRNDA 448
D N+ + + +PF G + LG +DA
Sbjct: 340 DVCAQNIVTLLRGGQELKTFVPFM---KGAVASLGAHDA 375
>gi|113867798|ref|YP_726287.1| NADH dehydrogenase [Ralstonia eutropha H16]
gi|113526574|emb|CAJ92919.1| Putative NADH dehydrogenase [Ralstonia eutropha H16]
Length = 475
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/439 (26%), Positives = 175/439 (39%), Gaps = 71/439 (16%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I I+GGGF G A LE L+ + ++LV F PML E++ V +
Sbjct: 7 IVIIGGGFAGTTLAQALEKLLPTTHR---LILVSDESYTTFNPMLAEVVGASVFPEHVIV 63
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L T QF V+ D G ++CT L + +D LV + G
Sbjct: 64 PIRQMLRRT--QFIMGTVQ-----DVNYAQGKLSCT-----TLAGLREIPFDHLVFAFGT 111
Query: 202 EPKLDVVPGAAEFAFPFSTLEDAC----RVDRKLSELERRNFERLEEKGIVQAINVETTI 257
LD+VPG AE A P + DA RV R+L+ +E LE +++ +
Sbjct: 112 RANLDLVPGMAEHALPLKLVGDALFIRNRVLRQLARME------LESDPVLRRRLGHFIV 165
Query: 258 CPTGTPGNR---EAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 314
G G E A + S R+ ++ R R E ++ + + A
Sbjct: 166 VGGGFSGVEVAGELADYLCSIRR------FYPRVQRE--ELAVTLLHDTGQLLSELPASL 217
Query: 315 NSDKYILELQPAIK---GLESQIFEADLVLW-------------TVGSKP--LLPHVEPP 356
I+ G + FEAD V+ TVG++P L+ +E
Sbjct: 218 GMAAARHMAARGIRLRLGTRALRFEADTVVLADGEMIEGATVVCTVGTRPNPLVATLE-- 275
Query: 357 NNRLHDLPL-NARGQAETDETLCVKGHPRIFALGD----SSALRDSSGRPLPATAQVAFQ 411
+L L RG+ ET+ + V+G P ++A+GD ++A D P TAQ A
Sbjct: 276 ----RNLALATRRGRIETNPDMSVRGMPGLWAIGDCARVANAATDEDSLP---TAQFAVA 328
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
QA NL + R PF +Q+ G M +G V G + G A +
Sbjct: 329 QARQLAHNLAGHLEQRESKPFSYQSKGAMASIGHMKGVAQ---VYGFSFSGLPAWLAWRA 385
Query: 472 AYLIRLPTDEHRLKVGVSW 490
YL+R+PT +L++ W
Sbjct: 386 LYLMRMPTLGRKLRLWAEW 404
>gi|422730267|ref|ZP_16786660.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0012]
gi|315149248|gb|EFT93264.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0012]
Length = 403
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 162/390 (41%), Gaps = 54/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVNEKMTTFIQGTVKTIDAATQ-------------TVALEGGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG E + +PG E A ++ A V + E + R ++ + + ++ + +C
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQE-QMRQYKATQNEEFLKIV-----VC 159
Query: 259 PTGTPGN-----------REAALKVLSARKVQLVLGYFVRCIRR-VGEFEASVKQPESGA 306
G G + A + +SA ++Q+ Y V + R + F +
Sbjct: 160 GAGFTGIELLGSLVENKPKFAEIAGVSADQIQI---YCVEAVTRLLPMFNEKLANYGVQL 216
Query: 307 IPNIAADKNSDKYILELQP-AIKGLESQI-----FEADLVLWTVGSKPLLPHVEPPNNRL 360
+ + A K I E++P A+ +++ A ++WT G HV +
Sbjct: 217 LKDSAIHLLLGKPIKEIKPGAVVYQDNEAGDLAELSAKTIIWTTGVSG--SHV------V 268
Query: 361 HDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGW 418
D A RG+ L H ++ +GD SA+ D+ + RP P TAQ+A + A
Sbjct: 269 GDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKMGAHAAK 328
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
N+ A + PF F++ G + +G A
Sbjct: 329 NIQAQLKGEATKPFSFKSQGSVCSIGNTRA 358
>gi|221196015|ref|ZP_03569062.1| NADH dehydrogenase [Burkholderia multivorans CGD2M]
gi|221202689|ref|ZP_03575708.1| NADH dehydrogenase [Burkholderia multivorans CGD2]
gi|221176623|gb|EEE09051.1| NADH dehydrogenase [Burkholderia multivorans CGD2]
gi|221182569|gb|EEE14969.1| NADH dehydrogenase [Burkholderia multivorans CGD2M]
Length = 430
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 150/382 (39%), Gaps = 32/382 (8%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGKSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F G + ++ L G + G VL L EYD L+L+LG
Sbjct: 65 VIFVAHACEHGYTYQPGELQGLDRRRRRVRLGEIRSQDGALVLEAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ VPG E + + A + L R+ R E + I
Sbjct: 123 SQANDFGVPGVREHCYFIDSQRQAEAFNEALRMRVFRSVARDEA--------LRVAIVGA 174
Query: 261 GTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
G G AA L+V A + +L L R + F + + I
Sbjct: 175 GATGVELAAELSRLLEVAQAYGDATVRERLQLTLLESGPRILAAFPPKISASAQQQLERI 234
Query: 311 AADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNA 367
+ + P + EADL++W G V+ P L L N
Sbjct: 235 GFRVLTSTRVTSAAPNGFHYGDDSFAEADLMVWAAG-------VKAPEFMQALGGLDTNR 287
Query: 368 RGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
Q TL IFA+GD + L D RPLP TAQVA QQA+ +L A ++
Sbjct: 288 ANQIVVGPTLQATADEHIFAIGDCAGLLPDGQERPLPPTAQVATQQAEHLAKHLPAWLDG 347
Query: 427 RPLLPFRFQNLGEMMILGRNDA 448
+P+ F F + G ++ L DA
Sbjct: 348 KPMPAFAFHDFGALVSLSDYDA 369
>gi|402568462|ref|YP_006617806.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cepacia GG4]
gi|402249659|gb|AFQ50112.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cepacia GG4]
Length = 430
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 161/398 (40%), Gaps = 64/398 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + ++ +VD+S V+KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGEHLGRAGRA-RITVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV------EYDW 194
F LA+ +D P + G++ G + + G +V EYD
Sbjct: 65 VIF---LAHA-----RDHGYTYQPGELKGLDRARRRVQLGAIRSQDGQLVIDARELEYDV 116
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE 254
L+L+LG++ VPG E + + + A + L R+ R E
Sbjct: 117 LILALGSQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEP--------FR 168
Query: 255 TTICPTGTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPES 304
I G G AA L+V A + +L L R + F +
Sbjct: 169 VAIVGAGATGVELAAELSRLLEVAQAYGDATVRERLQLTLLESGPRILAAFPPKISASAQ 228
Query: 305 GAIPNI-----------AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
+ I +AD N Y + EADL++W G V
Sbjct: 229 RRLEQIGFQVLTSTRVTSADANGFHYG----------DGSFAEADLMVWAAG-------V 271
Query: 354 EPPN--NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAF 410
+ P+ L L N Q TL +FA+GD ++L+ D RPLP TAQVA
Sbjct: 272 KAPDFMQALGGLDTNRANQIMVGPTLQATADEHVFAIGDCASLQPDGHERPLPPTAQVAT 331
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
QQA+ +L A ++ +PL PF F + G ++ + DA
Sbjct: 332 QQAEHLAKHLPAWLDGKPLPPFAFHDFGALVSISDYDA 369
>gi|403235785|ref|ZP_10914371.1| NADH dehydrogenase, FAD-containing subunit [Bacillus sp. 10403023]
Length = 405
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 162/389 (41%), Gaps = 47/389 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP+I +LG G+GGL T + L+ + ++ + LV++++ L+E +G + A
Sbjct: 2 RKPKIVVLGAGYGGLTTVVNLQKTLGVNE--ADITLVNKNDYHYETTWLHEASAGTLPAD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ + D+++ V+F K V + G V+LE +EYD+LV+
Sbjct: 60 RVRYQVEDVISGHKVKFVKGSVVKID-------------REGKRVILEDDSQIEYDYLVV 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+LG E + + G E AF S + A ++ + E + + EEK + TI
Sbjct: 107 ALGGESETFGIKGLKEHAFSISNVNTARQIKEHI-EYQFATYNTEEEKD-----DTRLTI 160
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVR-------CIRRVGE----FEASVKQPESGA 306
G L L R +L Y V C+ F+A + +
Sbjct: 161 VVGGAGFTGIEFLGELVNRVPELCRDYDVDQNKVRIICVEAAPTALPGFDAELVEYAVNH 220
Query: 307 IPNIAADKNSDKYILELQPA--IKGLE--SQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + I E P I G + ++ +A V+W G + N+ +
Sbjct: 221 LEKKGVEFKIGTAIKEGTPEGIIVGKDDVTEEIKAGTVVWAAGIR--------GNSVIEA 272
Query: 363 LPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQADFAGWNL 420
A RG+ + D+ L GH IF +GDSS + + RP P TAQ+A QQ N+
Sbjct: 273 SGFEAMRGRVKVDKHLRAPGHDEIFFVGDSSLVINEEINRPYPPTAQIAMQQGAVVAKNI 332
Query: 421 WAAINDR-PLLPFRFQNLGEMMILGRNDA 448
+ + L F F N G + LG +D
Sbjct: 333 SVLVRGQGELSAFTFDNKGTVCSLGEHDG 361
>gi|393765493|ref|ZP_10354055.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Methylobacterium sp. GXF4]
gi|392729075|gb|EIZ86378.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Methylobacterium sp. GXF4]
Length = 443
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 149/357 (41%), Gaps = 34/357 (9%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ + LVD++ ++KP+L+E+ +G +D I D L + + F+ R+ + D
Sbjct: 37 KRAHITLVDRARTHIWKPLLHEVAAGSLD---IGHHAVDYLHHAHMHGFRYRIGSMTGLD 93
Query: 167 HLGVNGPMACTH---GGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
+A +H G V E V YD LV+++G+ PG AE A T +
Sbjct: 94 REARTIRLAASHDPEGREVTPERS--VPYDTLVMAVGSTTNDFGTPGVAEHAIALDTQDQ 151
Query: 224 ACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 283
A R ++L R + G V+ + T+ G G AA + R V + G
Sbjct: 152 AVRFHQRLVNASLRAH---TQDGPVRPGQLHVTVIGAGATGTELAAELHRTFRHV-VATG 207
Query: 284 ---------YFVRCIRRVGEFEASVKQPESGAI----PNIAADKNSDKYILELQP-AIKG 329
+ + +V Q S + I D + E++ ++
Sbjct: 208 LDRIDPSKDIHITLVEAADRILPAVPQRLSVEVMQLLNKIGVDVRVKARVTEVRADGVQL 267
Query: 330 LESQIFEADLVLWTVGSKPLLPHVEPPN-NRLHDLPLNARGQAETDETLCVKGHPRIFAL 388
+ ++LV+W G K PP + L Q TL P IFA+
Sbjct: 268 ADGTFIPSELVVWAAGVK------APPFLQGIGGLETTRTNQLVVAPTLQTTRDPDIFAM 321
Query: 389 GDSSALRDS-SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
GD + L ++ S RP+P AQ A QQA + A I+ +PL PF++++ G ++ LG
Sbjct: 322 GDCAYLVEAGSDRPVPPRAQAAHQQASHLIGQIQAKIDGKPLKPFKYKDFGSLVSLG 378
>gi|398912277|ref|ZP_10655894.1| NADH dehydrogenase, FAD-containing subunit [Pseudomonas sp. GM49]
gi|398182500|gb|EJM70015.1| NADH dehydrogenase, FAD-containing subunit [Pseudomonas sp. GM49]
Length = 434
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 105/431 (24%), Positives = 176/431 (40%), Gaps = 60/431 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G GFGGL A L K +V LVD+ +F+P+LY++ + + +IA
Sbjct: 6 RIVIVGTGFGGLAAAKALSG------KACEVTLVDRCNHHLFQPLLYQVATAMLSPADIA 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
++ ++ V +GV+ + ++ ++ + YD+LVL+ G
Sbjct: 60 TATRTIIRAQNLRIVMAEV--------IGVD-----VNKKRLVTKTNDDLPYDYLVLATG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEE-KGIVQAINVETTICP 259
A+ A A +LEDA + KL NFE+ E K + + N+ T I
Sbjct: 107 ADYSFFGNDEWALHAPVLKSLEDALTIREKLLS----NFEQAERSKDVARIQNLLTFIVV 162
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 319
P E A + K L R + + + E+G+ A + Y
Sbjct: 163 GAGPTGVEMAGAIAELAKTALT-----RDFKSIDTKHLRILLVEAGSTVLSAFPEGLSSY 217
Query: 320 ILEL-----------QPAIKGLESQIF------EADLVLWTVGS--KPLLPHVEPPNNRL 360
++ +P +S I ++ V+W G+ +P + R
Sbjct: 218 AVQALRTLGVEVHLGRPVKTITDSGIMLGNTWIASNSVIWCAGTQARPAATWIGAEAARN 277
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 420
+ +N + V G+P IFA+GD + + RPLP A VA QQ + +
Sbjct: 278 KAIIVN--------DDCSVPGNPEIFAIGDVACYQADLNRPLPGIAPVAKQQGAYVAKAI 329
Query: 421 WAAINDRPLL-PFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
A I +P + PF+++N G M ++GR+ A + L G G A L +L+ L
Sbjct: 330 LARIQGKPRVPPFKYRNWGTMAVIGRSHAVAD---FGKIRLKGFTGWLAWSLVHLLLLID 386
Query: 480 DEHRLKVGVSW 490
R V ++W
Sbjct: 387 FRSRTSVYLNW 397
>gi|377562358|ref|ZP_09791763.1| putative NADH dehydrogenase [Gordonia otitidis NBRC 100426]
gi|377520509|dbj|GAB36928.1| putative NADH dehydrogenase [Gordonia otitidis NBRC 100426]
Length = 436
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 114/443 (25%), Positives = 183/443 (41%), Gaps = 70/443 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAW 137
KPR+ I+G GF G++ A RL+ K+P QV +VD+ +F+P+LY+ +G +
Sbjct: 4 KPRVVIVGAGFAGVHAARRLK-------KEPVQVTVVDRGTSHLFQPLLYQCATGVLSEG 56
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWL 195
I LL ++ LL +D + V+ + TVL G + ++YD+L
Sbjct: 57 AITSPVRHLLRRQ-----RNVNVLLGEADDIDVSAKVL-----TVLGADGNPIRLDYDYL 106
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELE----------RRNFERLEE 244
V+ G A E A TL+DA + R+ L E RR +
Sbjct: 107 VVGTGMRTAYHGCDDAIENAIGMKTLDDALAIRRQVLGAFEIAEALDDPEDRRGWLTFAV 166
Query: 245 KGIVQAINVETTICPTGT--PGN-REAALKVL-----SARKVQLVLGYFVRCIRRVGEFE 296
G PTG G RE A L S + + F R + F
Sbjct: 167 AGA----------GPTGVEIAGQIRELATLALGREFDSIDPTEARVLLFHGSDRVLPSFS 216
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAI------KGLESQIFEADLVLWTVGSKPLL 350
S+ + + I + + +++++ K E +EA LWT G + +
Sbjct: 217 PSLSRRAQRTLDKIGVETHLGVHVVDVGEDTVQTKDKKSGELTTYEARTTLWTAGVEAV- 275
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
P L + + G+ + L V+GHP +F GD+S+LRD LP A+VA
Sbjct: 276 PFARTLAKAL-GVQQDHGGRIPVRDDLSVEGHPEVFIAGDTSSLRD-----LPGVAEVAM 329
Query: 411 QQADFAG---WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 467
Q G +L A +R PF++ +LG + R +A V +E L G +G
Sbjct: 330 QGGRHVGAVIADLVAGQTERK--PFKYHDLGNAAYIARRNAIVQSGRLE---LSGTLGWL 384
Query: 468 ARKLAYLIRLPTDEHRLKVGVSW 490
A + ++ L +R+ V+W
Sbjct: 385 AWGVIHVAFLAGVRNRMGAVVTW 407
>gi|257090331|ref|ZP_05584692.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis CH188]
gi|257422164|ref|ZP_05599154.1| oxidoreductase [Enterococcus faecalis X98]
gi|312902833|ref|ZP_07762037.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0635]
gi|422690393|ref|ZP_16748450.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0630]
gi|422705355|ref|ZP_16763157.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0043]
gi|256999143|gb|EEU85663.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis CH188]
gi|257163988|gb|EEU93948.1| oxidoreductase [Enterococcus faecalis X98]
gi|310633887|gb|EFQ17170.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0635]
gi|315157201|gb|EFU01218.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0043]
gi|315576764|gb|EFU88955.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0630]
Length = 403
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 162/390 (41%), Gaps = 54/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVNEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG E + +PG E A ++ A V + E + R ++ + + ++ + +C
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQE-QMRQYKATQNEEFLKIV-----VC 159
Query: 259 PTGTPGN-----------REAALKVLSARKVQLVLGYFVRCIRR-VGEFEASVKQPESGA 306
G G + A + +SA ++Q+ Y V + R + F +
Sbjct: 160 GAGFTGIELLGSLVENKPKFAEIAGVSADQIQI---YCVEAVTRLLPMFNEKLANYGVQL 216
Query: 307 IPNIAADKNSDKYILELQP-AIKGLESQI-----FEADLVLWTVGSKPLLPHVEPPNNRL 360
+ + A K I E++P A+ +++ A ++WT G HV +
Sbjct: 217 LKDSAIHLLLGKPIKEIKPGAVVYQDNEAGDLAELSAKTIIWTTGVSG--SHV------V 268
Query: 361 HDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGW 418
D A RG+ L H ++ +GD SA+ D+ + RP P TAQ+A + A
Sbjct: 269 GDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKMGAHAAK 328
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
N+ A + PF F++ G + +G A
Sbjct: 329 NIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|154687316|ref|YP_001422477.1| hypothetical protein RBAM_029150 [Bacillus amyloliquefaciens FZB42]
gi|375363633|ref|YP_005131672.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|154353167|gb|ABS75246.1| YumB [Bacillus amyloliquefaciens FZB42]
gi|371569627|emb|CCF06477.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
Length = 406
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/410 (23%), Positives = 164/410 (40%), Gaps = 92/410 (22%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ ++E +G +
Sbjct: 5 KPKIVVLGAGYGGLMTVTRLPKHIGAND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + + V L G I YD+LV+
Sbjct: 63 CRYQIKDVINESRVKFVQDTVKAIDVQNK-------------KVTLSQGDI-PYDYLVIG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERR-----------NF 239
LGA P+ + G EFAFP + + + ++ + +E E+R F
Sbjct: 109 LGAVPETFGIKGLKEFAFPIANINTSRQLKDHIELQFATYNTEAEKRPDRLTIVVGGAGF 168
Query: 240 ERLE------------------EKGIVQAINVET--TICPTGTPGNREAALKVLSARKVQ 279
+E ++ +V+ + VE T+ P P + A++ L ++ V+
Sbjct: 169 TGIEFLGELANRKPELCRYYDIDESLVRIVCVEAAPTVLPGFDPELVDYAVQYLESKGVE 228
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 339
+G V+ R G + K + E + ++
Sbjct: 229 FKIGTAVQECRADG----------------VTVGKKDE-------------EPEEIKSQT 259
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSS 398
V+W G + P VE N RG+ + + L GH +F LGDSS + + +
Sbjct: 260 VVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDDVFILGDSSLFINEET 312
Query: 399 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
RP P TAQ+A QQ + NL I L F+ G + LG ++A
Sbjct: 313 ERPYPPTAQIAMQQGETVAKNLGGLIKGGQLEEFKPDIKGTVASLGEHNA 362
>gi|441510227|ref|ZP_20992137.1| putative NADH dehydrogenase [Gordonia aichiensis NBRC 108223]
gi|441445763|dbj|GAC50098.1| putative NADH dehydrogenase [Gordonia aichiensis NBRC 108223]
Length = 436
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 112/443 (25%), Positives = 183/443 (41%), Gaps = 70/443 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAW 137
KPR+ I+G GF G++ A RL+ K+P QV +VD+ +F+P+LY+ +G +
Sbjct: 4 KPRVVIVGAGFAGVHAARRLK-------KEPVQVTVVDRGTSHLFQPLLYQCATGVLSEG 56
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWL 195
I LL ++ LL +D + V+ + TVL G + ++YD+L
Sbjct: 57 AITSPVRHLLRRQ-----RNVNVLLGEADDIDVSAKVL-----TVLGADGNPIRLDYDYL 106
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-----------SELERRNFERLEE 244
V+ G A E A TL+DA + R++ +RR +
Sbjct: 107 VVGTGMRTAYHGCDDAIENAIGMKTLDDALAIRRQVLGAFEIAEALDDPEDRRGWLTFAV 166
Query: 245 KGIVQAINVETTICPTGT--PGN-REAALKVL-----SARKVQLVLGYFVRCIRRVGEFE 296
G PTG G RE A L S + + F R + F
Sbjct: 167 AGA----------GPTGVEIAGQIRELATLALGREFDSIDPTEARVLLFHGSDRVLPSFS 216
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAI------KGLESQIFEADLVLWTVGSKPLL 350
S+ + + I + + +++++ K E +EA LWT G + +
Sbjct: 217 PSLSRRAQRTLDKIGVETHLGVHVVDVGEDTVQTKDKKSGELTTYEARTTLWTAGVEAV- 275
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
P L + + G+ + L V+GHP +F GD+S+LRD LP A+VA
Sbjct: 276 PFARTLAKAL-GVQQDHGGRIPVRDDLSVEGHPEVFIAGDTSSLRD-----LPGVAEVAM 329
Query: 411 QQADFAG---WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 467
Q G +L A +R PF++ +LG + R +A V +E L G +G
Sbjct: 330 QGGRHVGAVIADLVAGQTERK--PFKYHDLGNAAYIARRNAIVQSGRLE---LSGTLGWL 384
Query: 468 ARKLAYLIRLPTDEHRLKVGVSW 490
A + ++ L +R+ V+W
Sbjct: 385 AWGVIHVAFLAGVRNRMGAVVTW 407
>gi|222150816|ref|YP_002559969.1| hypothetical protein MCCL_0566 [Macrococcus caseolyticus JCSC5402]
gi|222119938|dbj|BAH17273.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 408
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 111/448 (24%), Positives = 181/448 (40%), Gaps = 96/448 (21%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++ R+ ILGGG+ GL TA +L+ LV D + L++++E L+E +G +
Sbjct: 7 ERKRVVILGGGYAGLQTATKLQKLVSSQD--CDITLINKNEYHYESTWLHEASAGTREYQ 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ A +L + V F V + + TV G +D LV+
Sbjct: 65 DCLYPIASVLNQSKVDFVTAEVTKINKDEK-------------TVETTKGTF-NFDILVV 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-----------------DRK---------- 230
+LG E + + G E AF + A R+ D K
Sbjct: 111 ALGFESETFGITGMKEHAFQIENINTARRIATHIEERFAHYANSTDKDDKDLAILVGGAG 170
Query: 231 ------LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 284
L EL R E +E I Q+ V+ T C P L + S V+ V+ Y
Sbjct: 171 FTGIELLGELAERIPELCKEYNIDQS-KVKVT-CVEAAP----KMLPMFSETLVKYVVDY 224
Query: 285 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 344
R EF+ A P +AA++N +++++ E Q++ A+ V+W
Sbjct: 225 LEA---RGVEFKI--------ATPIVAANENG--FVVKVDEK----EEQLY-ANTVIWAA 266
Query: 345 GSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSALRDSSG--- 399
G + ++L + + RG+ E L + G+ IF +GD SA+ G
Sbjct: 267 GVR---------GSKLMEESFDGVKRGRIVVREDLRIDGYDDIFVIGDCSAVMAGEGDNK 317
Query: 400 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 459
RPLP TAQ+A QQ +F + +N+ L F + + G + LG +D GV
Sbjct: 318 RPLPTTAQLAMQQGEFTADAVKRLLNNEKLATFEYDDKGTVCSLGSHDGV-------GVV 370
Query: 460 LDGPIGHSARKLAYLIRLPTDEHRLKVG 487
I + +K A++ +L K+G
Sbjct: 371 FGKEI--TGKKAAFMKKLIDTRALFKIG 396
>gi|384266734|ref|YP_005422441.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|394992610|ref|ZP_10385385.1| YumB [Bacillus sp. 916]
gi|380500087|emb|CCG51125.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|393806647|gb|EJD67991.1| YumB [Bacillus sp. 916]
Length = 406
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/410 (23%), Positives = 164/410 (40%), Gaps = 92/410 (22%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ ++E +G +
Sbjct: 5 KPKIVVLGAGYGGLMTVTRLPKHIGAND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + + V L G I YD+LV+
Sbjct: 63 CRYQIKDVINESRVKFVQDTVKAIDVQNK-------------KVTLSQGDI-PYDYLVIG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERR-----------NF 239
LGA P+ + G EFAFP + + + ++ + +E E+R F
Sbjct: 109 LGAVPETFGIKGLKEFAFPIANINTSRQLKDHIELQFATYNTEAEKRPDRLTIVVGGAGF 168
Query: 240 ERLE------------------EKGIVQAINVET--TICPTGTPGNREAALKVLSARKVQ 279
+E ++ +V+ + VE T+ P P + A++ L ++ V+
Sbjct: 169 TGIEFLGELANRKPELCRYYDIDESLVRIVCVEAAPTVLPGFDPELVDYAVQYLESKGVE 228
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 339
+G V+ R G + K + E + ++
Sbjct: 229 FKIGTAVQECRADG----------------VTVGKKDE-------------EPEEIKSQT 259
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSS 398
V+W G + P VE N RG+ + + L GH +F LGDSS + + +
Sbjct: 260 VVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDDVFILGDSSLFINEET 312
Query: 399 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
RP P TAQ+A QQ + NL I L F+ G + LG ++A
Sbjct: 313 ERPYPPTAQIAMQQGETVAKNLGGLIKGGQLEEFKPDIKGTVASLGEHNA 362
>gi|383453361|ref|YP_005367350.1| putative NADH dehydrogenase [Corallococcus coralloides DSM 2259]
gi|380733579|gb|AFE09581.1| putative NADH dehydrogenase [Corallococcus coralloides DSM 2259]
Length = 459
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 92/381 (24%), Positives = 159/381 (41%), Gaps = 41/381 (10%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + ILGGGFGGLY A L +V +VD+ +F+P+LY++ + + +I
Sbjct: 9 PHVVILGGGFGGLYAARYLRK------AGVRVTMVDRHNHHLFQPLLYQVATATLSPSDI 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A A L A G +D V++L ++ GV+ T VLL G + YD+L+++
Sbjct: 63 A---APLRAMLG----RDHVQVLL-AEVTGVD-----TARKRVLLADGELA-YDFLIVAT 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTIC 258
GA + + T+EDA + R+ L E+ E E+
Sbjct: 109 GATHSYFGNDAWSRHSMGLKTVEDALEIRRRVLLAFEQAEREPDPERRRALLTFAIIGAG 168
Query: 259 PTG----------TPGNREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAI 307
PTG + + + + R +++L + + RV + ++ +
Sbjct: 169 PTGVELAGALAEISRNSLSGDFQNIDPRDARVIL---IEGMDRVLPTYPENLSVEARQVL 225
Query: 308 PNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA 367
+ + + + + A + + A VLW G + P R + L+
Sbjct: 226 VGLGVEVRTGTRVTNIDAAGVDMGPEHLAARTVLWAAGVE------ASPVARSLGVTLDR 279
Query: 368 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 427
G+ L V GHP IF +GD + ++ G +P A A Q+ A NL + +
Sbjct: 280 AGRVPVTPELTVPGHPDIFVVGDLALVKQEDGSAVPGVAPAAMQEGKHAVLNLRRQLAGQ 339
Query: 428 PLLPFRFQNLGEMMILGRNDA 448
P+ PFR+ + G ++GR A
Sbjct: 340 PMQPFRYWDRGTYAVIGRGHA 360
>gi|345011402|ref|YP_004813756.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces violaceusniger Tu 4113]
gi|344037751|gb|AEM83476.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces violaceusniger Tu 4113]
Length = 439
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 108/448 (24%), Positives = 184/448 (41%), Gaps = 68/448 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G GF G A L + ++L++ ++ F++ P+L E+ +G ++ ++
Sbjct: 5 RIVIVGAGFAGYQAARELSRTL---RGAADIVLINPNDYFLYLPLLPEVAAGVLEPRRVS 61
Query: 141 PRFADLLANT--------GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
L + GV RV P G +G MA Y
Sbjct: 62 VSLTGTLPHVRLVLGEVHGVDLDARRVSWRDPD---GRSGEMA----------------Y 102
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAI 251
D L+LS+G+ KL +PG AE A F + +A + D ++E E +A
Sbjct: 103 DRLILSVGSVNKLLPIPGVAEHAHGFRGMPEALFLRDHVTRQIE---MSGTSEDPRERAA 159
Query: 252 NVETTICPTGTPGNREAALKVL--------------SARKVQLVLGYFVRCIRRVGEFEA 297
+ G G AA VL + R L+L R + E +
Sbjct: 160 RRTFVVVGAGYTGTEVAAHGVLFTDSLARKNTTLRDAPRPRWLLLDIAPRVL---PELDK 216
Query: 298 SVKQPESGAIPNIAADKNSDKYILE-LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
+ + + + + + E ++ + + + ++W VG +P P VE
Sbjct: 217 KLSRTADRVLRKRGVEIRTRTTVKEATSEGVRLDDGEFIDTRSLIWCVGVRPD-PLVE-- 273
Query: 357 NNRLHDLPL-NARGQAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPATAQVAFQQA 413
L L RG+ D+ L V GHP + A GD++A+ D + G+ P TAQ A +Q
Sbjct: 274 -----QLGLATERGRLRVDQYLAVPGHPEVLACGDAAAVPDLTRPGQFTPMTAQHAHRQG 328
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
A N+ AA+ P++ +LG + LG AA P + L GPI ++ + +
Sbjct: 329 KVAAHNVLAALGRGAPKPYKHHDLGFTVDLGGAQAAADPLHIP---LSGPIANAVTRGYH 385
Query: 474 LIRLPTDEHRLKVGVSWLTKSAIDSVAL 501
L+ +P + R++V WL + + A+
Sbjct: 386 LMAMPGN--RIRVAADWLLDAVLPRQAV 411
>gi|449095652|ref|YP_007428143.1| hypothetical protein C663_3069 [Bacillus subtilis XF-1]
gi|449029567|gb|AGE64806.1| hypothetical protein C663_3069 [Bacillus subtilis XF-1]
Length = 448
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 164/387 (42%), Gaps = 46/387 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 47 KPKIVILGAGYGGLMTVTRLTKYVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 104
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ + V F +D VK + + V+L +G + +YD+LV+
Sbjct: 105 CRYQIKGVINQSRVNFVQDTVKAIKIDEK-------------KVVLANGEL-QYDYLVIG 150
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LGA P+ + G E+AFP + + + R+ R+ EL+ + EK + TI
Sbjct: 151 LGAVPETFGIKGLKEYAFPIANI-NTSRLLREHIELQFATYNTEAEKRPDR-----LTIV 204
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVK-----QPESGAIPNIAA 312
G L L+AR +L Y V R + R+ EA+ PE
Sbjct: 205 VGGAGFTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYL 264
Query: 313 DKNSDKY-----ILELQP-----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
++N ++ + E P K E + ++ V+W G + P VE
Sbjct: 265 EENGVEFKIGTAVQECTPEGVRVGKKDEEPEQIKSQTVVWAAGVRG-HPIVEEAGFE--- 320
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLW 421
N RG+ + + L GH +F LGDSS + + + RP P TAQ+A QQ NL
Sbjct: 321 ---NMRGRVKVNPDLRAPGHDNVFILGDSSLFMNEDTERPYPPTAQIAMQQGITVAKNLG 377
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDA 448
I L F+ G + LG ++A
Sbjct: 378 RLIKGGELEEFKPDIKGTVASLGEHNA 404
>gi|383762772|ref|YP_005441754.1| putative oxidoreductase [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381383040|dbj|BAL99856.1| putative oxidoreductase [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 412
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 151/355 (42%), Gaps = 40/355 (11%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
+VLL+D++ F P+LY++ + E++ IA +L P+ +
Sbjct: 29 RVLLLDRNNYHTFLPLLYQVAAAELEPEAIAYPVRSILRR-------------MPNTNFA 75
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-D 228
+ A L S + YD+L+L+ G+ PGA A P ++ DA + +
Sbjct: 76 LAEVQAVDLASRCLETSAGAISYDYLILAAGSTTHFFGTPGAEAHALPLKSMADAIAIRN 135
Query: 229 RKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNRE--AALKVLSARKVQLVLGYFV 286
R L E+ N E E+ + T + G P E +AL L ++ +
Sbjct: 136 RVLLSYEKANLESDPER----RQQILTFVIVGGGPTGVEFASALAELINGPLRRDFPFLS 191
Query: 287 RCIRRVGEFEASVKQPESGAIPNIA--ADKNSDKYILEL---QPAIKGLESQI------- 334
RV EA ++ G P++ A K + +E+ P + ES +
Sbjct: 192 SSPGRVVLVEA-MEALLPGFHPHLQDYAAKRLRRIGVEVLLGAPVTRIDESTVTLKDEMR 250
Query: 335 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 394
A+ ++WT G + +LP P+ G+ TL HP ++ +GD + L
Sbjct: 251 ITAETIVWTAGVQGILPVAR------WGFPVVKSGRVAVLPTLQTPDHPEVYVVGDLAYL 304
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
S PLP A VA QQ +A N+ ++ + LPFR+++ G M+ +GRN AA
Sbjct: 305 EQKSA-PLPMVAPVAIQQGKWAAQNILRQVHGQQPLPFRYRDRGAMVTIGRNAAA 358
>gi|421730406|ref|ZP_16169535.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|407076372|gb|EKE49356.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum
M27]
Length = 404
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 97/410 (23%), Positives = 164/410 (40%), Gaps = 92/410 (22%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ ++E +G +
Sbjct: 3 KPKIVVLGAGYGGLMTVTRLPKHIGAND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + + V L G I YD+LV+
Sbjct: 61 CRYQIKDVINESRVKFVQDTVKAIDVQNK-------------KVTLSQGDI-PYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERR-----------NF 239
LGA P+ + G EFAFP + + + ++ + +E E+R F
Sbjct: 107 LGAVPETFGIKGLKEFAFPIANINTSRQLKDHIELQFATYNTEAEKRPDRLTIVVGGAGF 166
Query: 240 ERLE------------------EKGIVQAINVET--TICPTGTPGNREAALKVLSARKVQ 279
+E ++ +V+ + VE T+ P P + A++ L ++ V+
Sbjct: 167 TGIEFLGELANRKPELCRYYDIDESLVRIVCVEAAPTVLPGFDPELVDYAVQYLESKGVE 226
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 339
+G V+ R G + K + E + ++
Sbjct: 227 FKIGTAVQECRADG----------------VTVGKKDE-------------EPEEIKSQT 257
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSS 398
V+W G + P VE N RG+ + + L GH +F LGDSS + + +
Sbjct: 258 VVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDDVFILGDSSLFINEET 310
Query: 399 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
RP P TAQ+A QQ + NL I L F+ G + LG ++A
Sbjct: 311 ERPYPPTAQIAMQQGETVAKNLGGLIKGGQLEEFKPDIKGTVASLGEHNA 360
>gi|256426146|ref|YP_003126799.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chitinophaga pinensis DSM 2588]
gi|256041054|gb|ACU64598.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chitinophaga pinensis DSM 2588]
Length = 447
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 102/406 (25%), Positives = 163/406 (40%), Gaps = 69/406 (16%)
Query: 71 TYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELL 130
T P KPR+ I+G GFGGL TA L D K Q++L D+ F+P+LY++
Sbjct: 8 TLNIPPTTKPRVVIVGAGFGGLNTAQSLP------DDKFQIVLFDKHNYHTFQPLLYQVA 61
Query: 131 SGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV 190
S + A IA +L +T KD H + ++ G + S +
Sbjct: 62 SAALQADSIAGPLRNLFHDT-----KDF--------HFRMLRVLSIDPGTNTINTSAGPL 108
Query: 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQA 250
+YD+L++S GA +A P T+ DA + +L +L FE G
Sbjct: 109 QYDYLIISTGARTNYFGNENMQRYALPLKTIPDALNMRSQLMQL----FEWASLNGNPAI 164
Query: 251 INVETTICPTGT-PGNREAALKVLSARKVQL-----------VLGYFVRCIRRVGEFEAS 298
+ + G P E A + RK L + Y + + RV
Sbjct: 165 SDYMLNVVLVGAGPTGVEMAGALSELRKNVLPKDYPALDFSKMKIYLLDGLDRV----LP 220
Query: 299 VKQPESGAIPNIAADKNSDKY--ILELQPAIKGLESQI--------FEADLVLWTVG--- 345
P+S A A K +K I++L ++ + + ++ LV+W+ G
Sbjct: 221 PMHPKSSA----RAQKYLEKMGVIIKLNTIVQDYDGETITLKTGEQIKSFLVVWSAGVTG 276
Query: 346 -SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLP 403
+ P +P RG+ TD V G P IFA+GD + ++ + + P
Sbjct: 277 ETFPGIPK-----------EWTERGRLLTDPNCRVIGSPNIFAIGDIALMKLEDYPKGHP 325
Query: 404 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
AQ A Q + G NL+A + PF++ + G + +GR A
Sbjct: 326 GVAQPAIQMGKYIGKNLYAIHRSDKVKPFKYFDKGSLATVGRGKAV 371
>gi|422741924|ref|ZP_16795946.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX2141]
gi|428767400|ref|YP_007153511.1| oxidoreductase, pyridine nucleotide-disulfide family [Enterococcus
faecalis str. Symbioflor 1]
gi|315143482|gb|EFT87498.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX2141]
gi|427185573|emb|CCO72797.1| oxidoreductase, pyridine nucleotide-disulfide family [Enterococcus
faecalis str. Symbioflor 1]
Length = 403
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 162/390 (41%), Gaps = 54/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG E + +PG E A ++ A V + E + R ++ + + ++ + +C
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQE-QMRQYKATQNEEFLKIV-----VC 159
Query: 259 PTGTPGN-----------REAALKVLSARKVQLVLGYFVRCIRR-VGEFEASVKQPESGA 306
G G + A + +SA ++Q+ Y V + R + F +
Sbjct: 160 GAGFTGIELLGSLVENKPKFAEIAGVSADQIQI---YCVEAVTRLLPMFNEKLANYGVQL 216
Query: 307 IPNIAADKNSDKYILELQP-AIKGLESQI-----FEADLVLWTVGSKPLLPHVEPPNNRL 360
+ + A K I E++P A+ +++ A ++WT G HV +
Sbjct: 217 LKDSAIHLLLGKPIKEIKPSAVVYQDNEAGDLAELSAKTIIWTTGVSG--SHV------V 268
Query: 361 HDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGW 418
D A RG+ L H ++ +GD SA+ D+ + RP P TAQ+A + A
Sbjct: 269 GDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKMGAHAAK 328
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
N+ A + PF F++ G + +G A
Sbjct: 329 NIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|256619528|ref|ZP_05476374.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis ATCC 4200]
gi|307275990|ref|ZP_07557123.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX2134]
gi|421514083|ref|ZP_15960787.1| NADH dehydrogenase [Enterococcus faecalis ATCC 29212]
gi|256599055|gb|EEU18231.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis ATCC 4200]
gi|306507320|gb|EFM76457.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX2134]
gi|401672813|gb|EJS79267.1| NADH dehydrogenase [Enterococcus faecalis ATCC 29212]
Length = 403
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 158/390 (40%), Gaps = 54/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG E + +PG E A ++ A V + E + R ++ + + ++ + +C
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQE-QMRQYKATQNEEFLKIV-----VC 159
Query: 259 PTGTPGN-----------REAALKVLSARKVQLVLGYFVRCIRR-VGEFEASVKQPESGA 306
G G + A + +SA ++Q+ Y V + R + F +
Sbjct: 160 GAGFTGIELLGSLVENKPKFAEIAGVSADQIQI---YCVEAVTRLLPMFNEKLANYGVQL 216
Query: 307 IPNIAADKNSDKYILELQPAIKGLESQ------IFEADLVLWTVGSKPLLPHVEPPNNRL 360
+ + A K I E++P + A ++WT G HV +
Sbjct: 217 LKDSAIHLLLGKPIKEIKPGTVVYQDNEAGDLAELSAKTIIWTTGVSG--SHV------V 268
Query: 361 HDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGW 418
D A RG+ L H ++ +GD SA+ D+ + RP P TAQ+A + A
Sbjct: 269 GDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKMGAHAAK 328
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
N+ A + PF F++ G + +G A
Sbjct: 329 NIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|308174897|ref|YP_003921602.1| NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens DSM 7]
gi|384160763|ref|YP_005542836.1| NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens TA208]
gi|384165658|ref|YP_005547037.1| NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens LL3]
gi|307607761|emb|CBI44132.1| putative NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens
DSM 7]
gi|328554851|gb|AEB25343.1| NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens TA208]
gi|328913213|gb|AEB64809.1| putative NAD-disulfide oxidoreductase [Bacillus amyloliquefaciens
LL3]
Length = 406
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 97/410 (23%), Positives = 164/410 (40%), Gaps = 92/410 (22%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ ++E +G +
Sbjct: 5 KPKIVVLGAGYGGLMTVTRLPKHIGTND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + + V L G I YD+LV+
Sbjct: 63 CRYQIKDVINESRVKFVQDTVKAIDVQNK-------------KVTLSQGDI-PYDYLVIG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERR-----------NF 239
LGA P+ + G EFAFP + + + ++ + +E E+R F
Sbjct: 109 LGAVPETFGIKGLKEFAFPIANINTSRQLKDHIELQFATYNTEAEKRPDRLTIVVGGAGF 168
Query: 240 ERLE------------------EKGIVQAINVET--TICPTGTPGNREAALKVLSARKVQ 279
+E ++ +V+ + VE T+ P P + A++ L ++ V+
Sbjct: 169 TGIEFLGELANRKPELCRNYDIDESLVRIVCVEAAPTVLPGFDPELVDYAVQYLESKGVE 228
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 339
+G V+ R G + K + E + ++
Sbjct: 229 FKIGTAVQECRADG----------------VTVGKKDE-------------EPEEIKSQT 259
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSS 398
V+W G + P VE N RG+ + + L GH +F LGDSS + + +
Sbjct: 260 VVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDNVFILGDSSLFINEET 312
Query: 399 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
RP P TAQ+A QQ + NL I L F+ G + LG ++A
Sbjct: 313 ERPYPPTAQIAMQQGETVAKNLGRLIKGGQLEEFKPDIKGTVASLGEHNA 362
>gi|29376564|ref|NP_815718.1| pyridine nucleotide-disulfide family oxidoreductase [Enterococcus
faecalis V583]
gi|227520174|ref|ZP_03950223.1| NADH dehydrogenase [Enterococcus faecalis TX0104]
gi|227555392|ref|ZP_03985439.1| NADH dehydrogenase [Enterococcus faecalis HH22]
gi|229545360|ref|ZP_04434085.1| NADH dehydrogenase [Enterococcus faecalis TX1322]
gi|229549605|ref|ZP_04438330.1| NADH dehydrogenase [Enterococcus faecalis ATCC 29200]
gi|255975463|ref|ZP_05426049.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis T2]
gi|256853571|ref|ZP_05558936.1| pyridine nucleotide-disulfide family oxidoreductase [Enterococcus
faecalis T8]
gi|256956507|ref|ZP_05560678.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis DS5]
gi|256961514|ref|ZP_05565685.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis Merz96]
gi|256962660|ref|ZP_05566831.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis HIP11704]
gi|257079429|ref|ZP_05573790.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis JH1]
gi|257082184|ref|ZP_05576545.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis E1Sol]
gi|257084802|ref|ZP_05579163.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis Fly1]
gi|293385202|ref|ZP_06631021.1| oxidoreductase, pyridine nucleotide-disulfide family [Enterococcus
faecalis R712]
gi|293388166|ref|ZP_06632688.1| oxidoreductase, pyridine nucleotide-disulfide family [Enterococcus
faecalis S613]
gi|294780334|ref|ZP_06745703.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
PC1.1]
gi|300860301|ref|ZP_07106388.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TUSoD Ef11]
gi|307270279|ref|ZP_07551587.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX4248]
gi|307272751|ref|ZP_07553998.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0855]
gi|307277721|ref|ZP_07558807.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0860]
gi|307287856|ref|ZP_07567889.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0109]
gi|307295828|ref|ZP_07575660.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0411]
gi|312900856|ref|ZP_07760150.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0470]
gi|312908287|ref|ZP_07767251.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
DAPTO 512]
gi|312910641|ref|ZP_07769482.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
DAPTO 516]
gi|312951208|ref|ZP_07770110.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0102]
gi|384513624|ref|YP_005708717.1| NADH dehydrogenase [Enterococcus faecalis OG1RF]
gi|384519055|ref|YP_005706360.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Enterococcus faecalis 62]
gi|397700286|ref|YP_006538074.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Enterococcus faecalis D32]
gi|422686731|ref|ZP_16744923.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX4000]
gi|422692667|ref|ZP_16750682.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0031]
gi|422698242|ref|ZP_16756159.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1346]
gi|422699909|ref|ZP_16757768.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1342]
gi|422703824|ref|ZP_16761641.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1302]
gi|422711503|ref|ZP_16768432.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0027]
gi|422712444|ref|ZP_16769212.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0309A]
gi|422716524|ref|ZP_16773227.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0309B]
gi|422725578|ref|ZP_16782037.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0312]
gi|422732632|ref|ZP_16788963.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0645]
gi|422735686|ref|ZP_16791952.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1341]
gi|424678313|ref|ZP_18115153.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV103]
gi|424679985|ref|ZP_18116796.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV116]
gi|424683371|ref|ZP_18120122.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV129]
gi|424688159|ref|ZP_18124775.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV25]
gi|424691075|ref|ZP_18127602.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV31]
gi|424692548|ref|ZP_18129035.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV37]
gi|424696059|ref|ZP_18132428.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV41]
gi|424702043|ref|ZP_18138206.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV62]
gi|424704264|ref|ZP_18140366.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV63]
gi|424707191|ref|ZP_18143176.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV65]
gi|424718770|ref|ZP_18147999.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV68]
gi|424722235|ref|ZP_18151299.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV72]
gi|424722990|ref|ZP_18152010.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV73]
gi|424726406|ref|ZP_18155070.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV81]
gi|424740540|ref|ZP_18168922.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV85]
gi|424749898|ref|ZP_18177975.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV93]
gi|430356491|ref|ZP_19424998.1| pyridine nucleotide-disulfide family oxidoreductase [Enterococcus
faecalis OG1X]
gi|430368125|ref|ZP_19428054.1| pyridine nucleotide-disulfide family oxidoreductase [Enterococcus
faecalis M7]
gi|29344028|gb|AAO81788.1| oxidoreductase, pyridine nucleotide-disulfide family [Enterococcus
faecalis V583]
gi|227072346|gb|EEI10309.1| NADH dehydrogenase [Enterococcus faecalis TX0104]
gi|227175506|gb|EEI56478.1| NADH dehydrogenase [Enterococcus faecalis HH22]
gi|229305270|gb|EEN71266.1| NADH dehydrogenase [Enterococcus faecalis ATCC 29200]
gi|229309567|gb|EEN75554.1| NADH dehydrogenase [Enterococcus faecalis TX1322]
gi|255968335|gb|EET98957.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis T2]
gi|256710514|gb|EEU25557.1| pyridine nucleotide-disulfide family oxidoreductase [Enterococcus
faecalis T8]
gi|256947003|gb|EEU63635.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis DS5]
gi|256952010|gb|EEU68642.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis Merz96]
gi|256953156|gb|EEU69788.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis HIP11704]
gi|256987459|gb|EEU74761.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis JH1]
gi|256990214|gb|EEU77516.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis E1Sol]
gi|256992832|gb|EEU80134.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis Fly1]
gi|291077535|gb|EFE14899.1| oxidoreductase, pyridine nucleotide-disulfide family [Enterococcus
faecalis R712]
gi|291082406|gb|EFE19369.1| oxidoreductase, pyridine nucleotide-disulfide family [Enterococcus
faecalis S613]
gi|294452598|gb|EFG21031.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
PC1.1]
gi|295113303|emb|CBL31940.1| NADH dehydrogenase, FAD-containing subunit [Enterococcus sp. 7L76]
gi|300849340|gb|EFK77090.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TUSoD Ef11]
gi|306496159|gb|EFM65738.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0411]
gi|306501001|gb|EFM70308.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0109]
gi|306505600|gb|EFM74784.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0860]
gi|306510365|gb|EFM79388.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0855]
gi|306513333|gb|EFM81957.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX4248]
gi|310625701|gb|EFQ08984.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
DAPTO 512]
gi|310630742|gb|EFQ14025.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0102]
gi|311289017|gb|EFQ67573.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
DAPTO 516]
gi|311291955|gb|EFQ70511.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0470]
gi|315028576|gb|EFT40508.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX4000]
gi|315034606|gb|EFT46538.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0027]
gi|315152612|gb|EFT96628.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0031]
gi|315159460|gb|EFU03477.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0312]
gi|315161449|gb|EFU05466.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0645]
gi|315164742|gb|EFU08759.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1302]
gi|315167572|gb|EFU11589.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1341]
gi|315171632|gb|EFU15649.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1342]
gi|315173217|gb|EFU17234.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX1346]
gi|315575047|gb|EFU87238.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0309B]
gi|315582473|gb|EFU94664.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0309A]
gi|323481188|gb|ADX80627.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Enterococcus faecalis 62]
gi|327535513|gb|AEA94347.1| NADH dehydrogenase [Enterococcus faecalis OG1RF]
gi|397336925|gb|AFO44597.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Enterococcus faecalis D32]
gi|402351641|gb|EJU86521.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV103]
gi|402354994|gb|EJU89778.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV116]
gi|402361868|gb|EJU96414.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV25]
gi|402362802|gb|EJU97317.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV31]
gi|402365051|gb|EJU99479.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV129]
gi|402370608|gb|EJV04811.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV62]
gi|402377942|gb|EJV11828.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV37]
gi|402378880|gb|EJV12708.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV41]
gi|402380311|gb|EJV14071.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV68]
gi|402382353|gb|EJV16020.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV63]
gi|402385476|gb|EJV19014.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV65]
gi|402389565|gb|EJV22958.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV72]
gi|402399538|gb|EJV32405.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV81]
gi|402400307|gb|EJV33142.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV73]
gi|402401797|gb|EJV34540.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV85]
gi|402407227|gb|EJV39760.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
ERV93]
gi|429514298|gb|ELA03850.1| pyridine nucleotide-disulfide family oxidoreductase [Enterococcus
faecalis OG1X]
gi|429516438|gb|ELA05929.1| pyridine nucleotide-disulfide family oxidoreductase [Enterococcus
faecalis M7]
Length = 403
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 162/390 (41%), Gaps = 54/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG E + +PG E A ++ A V + E + R ++ + + ++ + +C
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQE-QMRQYKATQNEEFLKIV-----VC 159
Query: 259 PTGTPGN-----------REAALKVLSARKVQLVLGYFVRCIRR-VGEFEASVKQPESGA 306
G G + A + +SA ++Q+ Y V + R + F +
Sbjct: 160 GAGFTGIELLGSLVENKPKFAEIAGVSADQIQI---YCVEAVTRLLPMFNEKLANYGVQL 216
Query: 307 IPNIAADKNSDKYILELQP-AIKGLESQI-----FEADLVLWTVGSKPLLPHVEPPNNRL 360
+ + A K I E++P A+ +++ A ++WT G HV +
Sbjct: 217 LKDSAIHLLLGKPIKEIKPGAVVYQDNEAGDLAELSAKTIIWTTGVSG--SHV------V 268
Query: 361 HDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGW 418
D A RG+ L H ++ +GD SA+ D+ + RP P TAQ+A + A
Sbjct: 269 GDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKMGAHAAK 328
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
N+ A + PF F++ G + +G A
Sbjct: 329 NIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|386822424|ref|ZP_10109639.1| NADH dehydrogenase, FAD-containing subunit [Joostella marina DSM
19592]
gi|386423670|gb|EIJ37501.1| NADH dehydrogenase, FAD-containing subunit [Joostella marina DSM
19592]
Length = 451
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 98/435 (22%), Positives = 173/435 (39%), Gaps = 55/435 (12%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD K P + I+GGGF GL +L+ K+ QV+L+D++ F+P+LY++ + +
Sbjct: 24 PDTKLPSVVIVGGGFAGLALVEKLKH------KEVQVVLLDKNNFHQFQPLLYQVATSAL 77
Query: 135 DAWEIAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ I F + FF+ V + P + T+L G V YD
Sbjct: 78 EPDSIVFPFRKQINGYKNVFFRLAEVVEIQPDSN-------------TILTNKGS-VSYD 123
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIV----Q 249
+LVL+ GA + AE + + D+ + + + LE+ I +
Sbjct: 124 YLVLATGATTNFFGMDSVAENSLGMKDIRDSLNIRHMM-------LQNLEQAAITCDNKE 176
Query: 250 AINVETTICPTGTPGNREAALKVLSARKVQLVLGY--------FVRCIRRVGEFEASVKQ 301
+ + G P E A + K L Y + I + E +++
Sbjct: 177 RDALTNFVIVGGGPAGVEMAGALAEFCKYILPKDYPEYPASIMNIYLIEAIDELLSTMSD 236
Query: 302 PESGAIPNIAADKNSDKYILELQPAIKGLE-----SQIFEADLVLWTVGSKPLLPHVEPP 356
S D N + E G E + A ++WT G K P
Sbjct: 237 KASSKTLKYLEDLNVKVLLNEAVSNYDGKEVTTKSDKTILAKNLIWTAGVKGQFP----- 291
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADF 415
N + + + +T+ L V+G+ IFA+GD +AL + + P AQ A QQ +
Sbjct: 292 -NGIDGKHVVRGNRIKTNANLKVEGYENIFAIGDIAALISKETPKGHPQVAQTAIQQGKY 350
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
G ++ IN++ + PF++++ G + +G+ A + G + +L+
Sbjct: 351 LGDSILNIINNKSIKPFKYKDKGSLATVGKRKAVAD---LGKFKFAGYFAWLLWSVVHLM 407
Query: 476 RLPTDEHRLKVGVSW 490
+ +RL VG +W
Sbjct: 408 SISGFRNRLMVGFNW 422
>gi|451345660|ref|YP_007444291.1| NADH dehydrogenase [Bacillus amyloliquefaciens IT-45]
gi|449849418|gb|AGF26410.1| NADH dehydrogenase [Bacillus amyloliquefaciens IT-45]
Length = 404
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 158/397 (39%), Gaps = 66/397 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ ++E +G +
Sbjct: 3 KPKIVVLGAGYGGLMTVTRLPKHIGAND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + + V L G I YD+LV+
Sbjct: 61 CRYQIKDVINESRVKFVQDTVKAIDVQNK-------------KVTLSQGDI-PYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK-----GIVQAINV 253
LGA P+ + G EFAFP + + + R + EL+ + EK IV
Sbjct: 107 LGAVPETFGIKGLKEFAFPIANI-NTSRQLKDHIELQFATYNTEAEKRPDRLTIVVGGAG 165
Query: 254 ETTICPTGTPGNR--------------------EAALKVLSARKVQLVLGYFVRCIRRVG 293
T I G NR EAA VL +LV Y V+ + G
Sbjct: 166 FTGIEFLGELANRKPELCRYYDIDESLVRIVCVEAAPTVLPGFDQELV-DYAVQYLESKG 224
Query: 294 -EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 352
EF+ E A K+ E + ++ V+W G + P
Sbjct: 225 VEFKIGTAVQECRADGVTVGKKDE--------------EPEEIKSQTVVWAAGVRG-HPI 269
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQ 411
VE N RG+ + + L GH +F LGDSS + + + RP P TAQ+A Q
Sbjct: 270 VEEAGFE------NMRGRVKVNPDLRAPGHDDVFILGDSSLFINEETERPYPPTAQIAMQ 323
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
Q + NL I L F+ G + LG ++A
Sbjct: 324 QGETVAKNLGGLIKGGQLEEFKPDIKGTVASLGEHNA 360
>gi|408370711|ref|ZP_11168486.1| NADH dehydrogenase [Galbibacter sp. ck-I2-15]
gi|407743948|gb|EKF55520.1| NADH dehydrogenase [Galbibacter sp. ck-I2-15]
Length = 451
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 100/435 (22%), Positives = 171/435 (39%), Gaps = 55/435 (12%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PD K PR+ I+GGGF GL +L+ K+ QV+L+D++ F+P+LY++ + +
Sbjct: 24 PDTKLPRVVIVGGGFAGLALVEKLKH------KEVQVVLLDKNNFHQFQPLLYQVATSAL 77
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ I F + FF+ L + + + T+ G+V YD+
Sbjct: 78 EPDSIVFPFRKQINGYKNVFFR-----LAEVEEIQPDSNTILTNKGSV--------SYDY 124
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIV----QA 250
LVL+ G + AE + + D+ + + + LE+ I +
Sbjct: 125 LVLATGTTTNFFGMDSVAENSLGMKDIRDSLNIRHMM-------LQNLEQAAITCDDKER 177
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGY--------FVRCIRRVGEFEASVKQP 302
+ + G P E A + K L Y + I + E ++
Sbjct: 178 DALTNFVIVGGGPAGVEMAGALAEFCKYILPKDYPEYPSSIMNIYLIEAIDELLGTMSDK 237
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGLE-----SQIFEADLVLWTVGSKPLLPHVEPPN 357
S D N + E G E + A ++WT G K P
Sbjct: 238 ASSKTLKYLEDLNVKVLLNEAVSNYDGNEVTTKSDKTILAKNLIWTAGVKGQFP------ 291
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP--LPATAQVAFQQADF 415
N + + + + +TD L V+G+ IFA+GD +AL S RP P AQ A QQ +
Sbjct: 292 NGIDEKHIVRGNRIKTDANLKVEGYENIFAIGDIAALI-SEERPKGHPQVAQAAIQQGKW 350
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
G +L I + PF +++ G + +G+ A + + G + +L+
Sbjct: 351 LGDSLLKIIKNEAPKPFEYKDKGSLATVGKRKAVAD---LGKMKFAGYFAWLLWSIVHLM 407
Query: 476 RLPTDEHRLKVGVSW 490
+ +RL VG +W
Sbjct: 408 SISGFRNRLMVGFNW 422
>gi|257419678|ref|ZP_05596672.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis T11]
gi|257161506|gb|EEU91466.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis T11]
Length = 403
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 162/390 (41%), Gaps = 54/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG E + +PG E A ++ A V + E + R ++ + + ++ + +C
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQE-QMRQYKATQNEEFLKIV-----VC 159
Query: 259 PTGTPGN-----------REAALKVLSARKVQLVLGYFVRCIRR-VGEFEASVKQPESGA 306
G G + A + +SA ++Q+ Y V + R + F +
Sbjct: 160 GAGFTGIELLGSLFENKPKFAEIAGVSADQIQI---YCVEAVTRLLPMFNEKLANYGVQL 216
Query: 307 IPNIAADKNSDKYILELQP-AIKGLESQI-----FEADLVLWTVGSKPLLPHVEPPNNRL 360
+ + A K I E++P A+ +++ A ++WT G HV +
Sbjct: 217 LKDSAIHLLLGKPIKEIKPGAVVYQDNEAGDLAELSAKTIIWTTGVSG--SHV------V 268
Query: 361 HDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGW 418
D A RG+ L H ++ +GD SA+ D+ + RP P TAQ+A + A
Sbjct: 269 GDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKMGAHAAK 328
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
N+ A + PF F++ G + +G A
Sbjct: 329 NIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|221209719|ref|ZP_03582700.1| NADH dehydrogenase [Burkholderia multivorans CGD1]
gi|221170407|gb|EEE02873.1| NADH dehydrogenase [Burkholderia multivorans CGD1]
Length = 430
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 154/385 (40%), Gaps = 38/385 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + QV +VD+S V+KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGKSGGA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F G + ++ L + G + G VL L EYD L+L+LG
Sbjct: 65 VIFVAHACEHGYTYQPGELQGLDRTRRRVRLGEIRSQDGAVVLEAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ VPG E + + A + L R+ R E + I
Sbjct: 123 SQANDFGVPGVREHCYFIDSQRQAEAFNEALRMRVFRSVARDEA--------LRVAIVGA 174
Query: 261 GTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
G G AA L+V A + +L L R + F + + I
Sbjct: 175 GATGVELAAELSRLLEVAQAYGDATVRERLQLTLLESGPRILAAFPPKISASAQQQLERI 234
Query: 311 AADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPP-----NNRLHDLP 364
+ + P + EADL++W G K P NR + +
Sbjct: 235 GFRVLTSTRVTSAAPNGFHYGDDSFAEADLMVWAAGVKA--PEFMQALGGLDTNRANQIV 292
Query: 365 LNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
+ QA TDE IFA+GD +S L D RPLP TAQVA QQA+ +L A
Sbjct: 293 VGPTLQATTDE--------HIFAIGDCASLLPDGQERPLPPTAQVATQQAEHLAKHLPAW 344
Query: 424 INDRPLLPFRFQNLGEMMILGRNDA 448
++ +P+ F F + G ++ L DA
Sbjct: 345 LDGKPMPAFAFHDFGALVSLSDYDA 369
>gi|138896541|ref|YP_001126994.1| NADH dehydrogenase [Geobacillus thermodenitrificans NG80-2]
gi|134268054|gb|ABO68249.1| NADH dehydrogenase [Geobacillus thermodenitrificans NG80-2]
Length = 407
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 166/400 (41%), Gaps = 70/400 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP + ILG G+GGL T +RL+ L+ ++ + LV++ + L+E +G +
Sbjct: 5 RKPNVVILGAGYGGLMTTVRLQKLIGVNE--ANITLVNKHDYHYETTWLHEASAGTLHHD 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ AD++ V+F KD V + P++ VLLE+G + EYD+LV+
Sbjct: 63 RVRYPIADVIDRNKVKFIKDTVTKIAPNEK-------------KVLLENGEL-EYDYLVI 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG-----IVQAIN 252
+LG E + + G E+AF + + +A R R+ E + + EEK IV
Sbjct: 109 ALGFESETFGIKGLKEYAFSIANV-NAARQIREHIEYQFATYNVEEEKKDERLTIVVGGA 167
Query: 253 VETTICPTGTPGNR--------------------EAALKVLSARKVQLVLGYFVRCIRRV 292
T I G NR EAA VL +LV Y V + R
Sbjct: 168 GFTGIEFLGELVNRIPELCREYDIDPNKVRIICVEAAPTVLPGFDPELV-EYAVSQLERK 226
Query: 293 G-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 351
G EF+ E I A KG E + +A V+W G +
Sbjct: 227 GVEFKIGTAIKECTPDGIIVA---------------KGDEVEEIKAGTVVWAAGVR---- 267
Query: 352 HVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVA 409
++ L R + + D L G+ IF +GD + + + + RP P TAQ+A
Sbjct: 268 ----GSSVLEQSGFETMRSRIKVDPFLRAPGYEDIFVVGDCALIINEETNRPYPPTAQIA 323
Query: 410 FQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 448
Q+ NL I + L F+ G + LG +DA
Sbjct: 324 MQEGQLCAKNLAVLIRGQGELESFKPDIKGTVCSLGHDDA 363
>gi|32266742|ref|NP_860774.1| NADH dehydrogenase Ndh [Helicobacter hepaticus ATCC 51449]
gi|32262793|gb|AAP77840.1| NADH dehydrogenase Ndh [Helicobacter hepaticus ATCC 51449]
Length = 401
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 101/394 (25%), Positives = 168/394 (42%), Gaps = 65/394 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I I+GGG+GGL TA+ L+ + D V L+ + + +L+++ G + A +
Sbjct: 2 KPKILIVGGGYGGLRTAITLQEQLKVD---ADVTLISKHDYHYQTTLLHKVAIGTLSARK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
F +L V F KD++ P ++ +G EYD+LV++
Sbjct: 59 SRVYFRKILDLQKVHFIKDKILSFEPESKR--------------VIGNGGAYEYDYLVIA 104
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG +P + G E+A S+L A ++D+ +E R E K A ++ +C
Sbjct: 105 LGFKPDDFGIKGVEEYAHKLSSLNAALKLDK---LIEYRFKEYCHTK---NADDLSVIVC 158
Query: 259 PTGTPGNREAALKVLSARKVQLVL-GYF------VRCIRRVGEF---------EASVKQP 302
TG G AA L +R L L G V CI R + K+
Sbjct: 159 GTGFTGIEFAA--ELGSRLDDLCLIGGIPRDVPKVTCIGRSDRILPMFSKKGSALAQKKL 216
Query: 303 ESGAIPNIAA----DKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
E+ + I + SD +++ IK + + + +LW+ G K N+
Sbjct: 217 EAFGVEVICGGDVQECRSDGVMIKHNGEIKHI-----KGNTILWSAGVK--------GND 263
Query: 359 RLHDLPL-NARGQAETDETLCVKGHPRIFALGDS--SALRDSSGRPLPATAQVAFQQADF 415
L +G+ + D L + I+ +GD SA RD+ P TAQ+A Q D+
Sbjct: 264 SLERSCFETTKGRIKVDPYLRCPQYENIYVVGDCAISASRDAIHAP---TAQLAAQMGDY 320
Query: 416 AGWNLWAAINDRPLLP-FRFQNLGEMMILGRNDA 448
G +L +N++P F F++ G + +G D
Sbjct: 321 VGKSLIKILNNKPQKKVFAFKHRGTVCSIGHTDG 354
>gi|170750079|ref|YP_001756339.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Methylobacterium radiotolerans JCM 2831]
gi|170656601|gb|ACB25656.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Methylobacterium radiotolerans JCM 2831]
Length = 443
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 149/356 (41%), Gaps = 32/356 (8%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ V LVD++ ++KP+L+E+ +G +D A D L + F+ R+ + D
Sbjct: 37 KRAHVTLVDRARTHIWKPLLHEVAAGSLDVGHHA---VDYLHHAHTHGFRYRIGRMTGLD 93
Query: 167 HLGVNGPMACTH---GGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
+A ++ G V E V YD LV+++G+ PG AE A T +
Sbjct: 94 REARTIQLAASYDAEGREVTPERA--VPYDTLVMAVGSTTNDFGTPGVAEHAIALDTQDQ 151
Query: 224 ACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKV----- 278
A R ++L R + G V+ + T+ G G AA + R V
Sbjct: 152 AVRFHQRLVNASLRAH---TQAGPVRPGQLHVTVIGAGATGTELAAELHRTLRHVVSTGL 208
Query: 279 -QLVLGYFVRC--IRRVGEFEASVKQPESGAI----PNIAADKNSDKYILELQP-AIKGL 330
++ G +R + +V Q S + I D + E++ ++
Sbjct: 209 DKIDPGKDIRITLVEAADRILPAVPQRLSAEVMQLLNKIGVDVRVKARVTEVRADGVQLA 268
Query: 331 ESQIFEADLVLWTVGSKPLLPHVEPPN-NRLHDLPLNARGQAETDETLCVKGHPRIFALG 389
+ ++LV+W G K PP + L Q TL P IFA+G
Sbjct: 269 DGTFIPSELVVWAAGVK------APPFLQGIGGLETTRTNQLVVTPTLQTTRDPDIFAIG 322
Query: 390 DSSALRDS-SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
D + L ++ S P+P AQ A QQA + A I+ +PL PFR+++ G ++ LG
Sbjct: 323 DCAYLVEAGSDTPVPPRAQAAHQQASHLIGQIQAKIDGKPLKPFRYKDFGSLVSLG 378
>gi|416929412|ref|ZP_11933377.1| NADH dehydrogenase [Burkholderia sp. TJI49]
gi|325525947|gb|EGD03639.1| NADH dehydrogenase [Burkholderia sp. TJI49]
Length = 430
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 152/382 (39%), Gaps = 32/382 (8%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGKSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F G + ++ L + G + G VL L EYD L+L+LG
Sbjct: 65 VIFVAHACEHGYTYQPGELQGLDRARRRVRLGEIRSQDGALVLEAREL--EYDVLILALG 122
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ VPG E + + A + L R+ R E + I
Sbjct: 123 SQANDFGVPGVREHCYFIDSQPQAEAFNEALRMRVFRSVARDEA--------LRVAIVGA 174
Query: 261 GTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
G G AA L+V A + +L L R + F + + I
Sbjct: 175 GATGVELAAELSRLLEVAQAYGDATVRERLQLTLLESGPRILAAFPPKISASAQQQLERI 234
Query: 311 AADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNA 367
+ + P + EADL++W G V+ P L L N
Sbjct: 235 GFRVLTSTRVTSAAPNGFHYGDDSFAEADLMVWAAG-------VKAPEFMQALGGLDTNR 287
Query: 368 RGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
Q TL IFA+GD +S L D RPLP TAQVA QQA+ +L A ++
Sbjct: 288 ANQIVVGPTLQTTADEHIFAIGDCASLLPDGQERPLPPTAQVATQQAEHLAKHLPAWLDG 347
Query: 427 RPLLPFRFQNLGEMMILGRNDA 448
+P+ F F + G ++ L DA
Sbjct: 348 KPMPAFAFHDFGALVSLSDYDA 369
>gi|429506480|ref|YP_007187664.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429488070|gb|AFZ91994.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 404
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 96/410 (23%), Positives = 164/410 (40%), Gaps = 92/410 (22%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+GGL T RL + +D + LV++ ++E +G +
Sbjct: 3 KPKIVVLGAGYGGLMTVTRLPKHIGAND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V+F +D VK + + V L G I YD+LV+
Sbjct: 61 CRYQIKDVINESRVKFVQDTVKAIDVQNK-------------KVTLSQGDI-PYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERR-----------NF 239
LGA P+ + G EFAFP + + + ++ + +E E+R F
Sbjct: 107 LGAVPETFGIKGLKEFAFPIANINTSRQLKDHIELQFATYNTEAEKRPDRLTIVVGGAGF 166
Query: 240 ERLE------------------EKGIVQAINVET--TICPTGTPGNREAALKVLSARKVQ 279
+E ++ +V+ + VE T+ P P + A++ L ++ ++
Sbjct: 167 TGIEFLGELANRKPELCRYYDIDESLVRIVCVEAAPTVLPGFDPELVDYAVQYLESKGIE 226
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 339
+G V+ R G + K + E + ++
Sbjct: 227 FKIGTAVQECRADG----------------VTVGKKDE-------------EPEEIKSQT 257
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSS 398
V+W G + P VE N RG+ + + L GH +F LGDSS + + +
Sbjct: 258 VVWAAGVRG-HPIVEEAGFE------NMRGRVKVNPDLRAPGHDDVFILGDSSLFINEET 310
Query: 399 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
RP P TAQ+A QQ + NL I L F+ G + LG ++A
Sbjct: 311 ERPYPPTAQIAMQQGETVAKNLGGLIKGGQLEEFKPDIKGTVASLGEHNA 360
>gi|357032874|ref|ZP_09094809.1| NADH dehydrogenase [Gluconobacter morbifer G707]
gi|356413865|gb|EHH67517.1| NADH dehydrogenase [Gluconobacter morbifer G707]
Length = 430
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 155/385 (40%), Gaps = 34/385 (8%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+P I I+GGG GL A +L + + K ++ L+D+S V+KPML+ +G V
Sbjct: 4 RPEILIVGGGVAGLSLATQLGKSLGKRGKA-RITLIDKSFSHVWKPMLHCFAAGTVLNEN 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
F + +F+ V + V P+ + G T++L+S + YD +VL+
Sbjct: 63 DRISFITQASRHHFEFWPGEVVSVDRDKKEVVLSPLHASDG-TLVLDS-RTLRYDAMVLA 120
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
+G+ PG E P L DA + K + F E ++ I
Sbjct: 121 IGSCANDFGTPGVKEHCLPIDNLVDANHFNEKFRMELLKAFANTSE--------LDIAIV 172
Query: 259 PTGTPGNREAA-------------LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 305
G G + AA L +L + R + F SV +
Sbjct: 173 GGGATGTQLAAELHKALDIVDPYSLHAFGRTPPKLHVTLLQSGARILPAFPESVSEAAKT 232
Query: 306 AIPNIAADKNSDKYILELQPAIKGLESQIF-EADLVLWTVGSKPLLPHVEPPNNRLHDLP 364
+ I + + + L+ A L +W G K P V LP
Sbjct: 233 ELERIGVTVRTGARVTGADASGFILKDGTHVPAKLRVWAAGVKA--PQV---TQTYGGLP 287
Query: 365 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 424
LN GQ + L K P IFA+GD S + D PLPATAQVA QQA+ G +L A I
Sbjct: 288 LNRSGQILVNGNLSSKDDPNIFAMGDCSFIEDD---PLPATAQVARQQANHLGRHLPAWI 344
Query: 425 -NDRPLLPFRFQNLGEMMILGRNDA 448
+ R + F N G ++ LG+ +
Sbjct: 345 EHGRDVPGCIFHNKGAIVALGKYNG 369
>gi|78061849|ref|YP_371757.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia sp. 383]
gi|77969734|gb|ABB11113.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia sp. 383]
Length = 430
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 159/390 (40%), Gaps = 48/390 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S ++KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLQLATRLGERLGRSGRA-QVTIVDRSPTHIWKPMLHTIAAGTRDVQQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV------EYDW 194
F LA+ +D P + G++ G + + G +V EYD
Sbjct: 65 VIF---LAHA-----RDHGYSYQPGELTGLDRARRRVQLGEIRSQDGELVLEARELEYDV 116
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE 254
L+L+LG++ VPG + + + + A + L R+ R E
Sbjct: 117 LILALGSQANDFGVPGVRDHCYFIDSQKQAETFNEALRVRVFRSIARDEP--------FR 168
Query: 255 TTICPTGTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPES 304
I G G AA L+V A + +L L R + F +
Sbjct: 169 VAIVGAGATGVELAAELSRLLEVAQAYGDATVRERLQLTLLESGPRILAAFPPRISASAQ 228
Query: 305 GAIPNIAADKNSDKYILELQPAIKGL---ESQIFEADLVLWTVGSKPLLPHVEPPN--NR 359
+ I + + A G + EADL++W G V+ P+
Sbjct: 229 RRLEQIGFHVLTSTRVTS--AAANGFHYGDGSFAEADLMVWAAG-------VKAPDFMQA 279
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGW 418
L L N Q TL G +FA+GD +S L D RPLP TAQVA QQA+
Sbjct: 280 LDGLDTNRANQIVVGPTLQATGDDHVFAIGDCASLLPDGHERPLPPTAQVATQQAEHLAK 339
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+L A + +P+ PF F + G ++ + DA
Sbjct: 340 HLPAWLEGKPIPPFAFHDFGALVSISDYDA 369
>gi|319650399|ref|ZP_08004542.1| NADH dehydrogenase [Bacillus sp. 2_A_57_CT2]
gi|317397960|gb|EFV78655.1| NADH dehydrogenase [Bacillus sp. 2_A_57_CT2]
Length = 405
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 107/413 (25%), Positives = 170/413 (41%), Gaps = 95/413 (23%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP+I ILG G+GGL A RL+ V ++ +++LV++++ L+E +G +
Sbjct: 2 RKPKIVILGAGYGGLMVATRLQKSVGTNE--AEIVLVNKNDYHYETTWLHEASAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ D++ V+F + + + V+LESG I +YD+LV+
Sbjct: 60 RVRYDIKDVIDRNKVEFVQGTALEIKTEEK-------------KVILESGEI-DYDYLVV 105
Query: 198 SLGAEPKLDVVPGAAEFAFP-----------------FSTLE-DACRVDRKLS------- 232
SLGAEP+ + G E AF F+T DA + D +L+
Sbjct: 106 SLGAEPETFGIKGLKEHAFSIVNVNAARQIREHIEYQFATYNTDAEKKDERLTIVVGGAG 165
Query: 233 --------ELERRNFERLEEKGI----VQAINVETT--ICPTGTPGNREAALKVLSARKV 278
EL R E +E + V+ I VE + P P A+ L + V
Sbjct: 166 FTGIEFLGELANRVPELCKEYDVDYHKVKIICVEAAPMVLPGFDPELVNYAVSHLEKKGV 225
Query: 279 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 338
Q ++G ++ EA+ PE I K D E + +A
Sbjct: 226 QFMIGTAIK--------EAT---PEG-----IIVGKGED-------------EVEEIKAA 256
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRD 396
V+W G + N+ + + + A RG+ + L GH +F +GD S + +
Sbjct: 257 TVVWAAGVR--------GNSIIENSGIEAMRGRVKVQPDLRAPGHDNLFIIGDCSLIINE 308
Query: 397 SSGRPLPATAQVAFQQADFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDA 448
RP P TAQ+A QQ + N+ A I N L F G + LG +DA
Sbjct: 309 EINRPYPPTAQIAMQQGEVCARNITALIRNKTELETFTPDIKGTVCSLGEHDA 361
>gi|393723305|ref|ZP_10343232.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Sphingomonas sp. PAMC 26605]
Length = 471
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 90/398 (22%), Positives = 163/398 (40%), Gaps = 43/398 (10%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS----D 166
V LVD+ +F+P+LY++ + + ++A ++ + R ++L D
Sbjct: 37 VTLVDRQNHHLFQPLLYQVATAGLSPADVAAPIRSIVKK------QKRTRVLLDQVDGID 90
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
H TV L SG + YD L+L+ GA G AE A T++DA
Sbjct: 91 H----------QAKTVSLSSGATLHYDSLILATGATHSYFGNEGWAEHAPGIKTIDDALH 140
Query: 227 VDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKV--LSARKVQLVLGY 284
V R++ L + E ++ + + T + G P E A V L+ + Y
Sbjct: 141 VRRQIL-LALEHAETNRQQNVEERAEFLTFLIVGGGPTGVEMAGAVAELTRHAADMDFHY 199
Query: 285 FVR-CIRRV---------GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 334
R C+R + F + + A+ + + + + A ++ ++
Sbjct: 200 ITRRCVRIILIEAGQRLLATFPERLSEAARRALVKLGVEVRLGSRVTSIDAAGAVVDDEL 259
Query: 335 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 394
+ ++W G K P + DL + G+ D +L V ++A+GD++A
Sbjct: 260 IRSATIIWAAGVK------ASPAAQWLDLAPDRAGRVIVDASLQVADRAGVYAIGDTAAA 313
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAVSPS 453
++G+P+P A A QQ + ++ A + R FR+++ G + +GR A V
Sbjct: 314 TSATGQPVPGIAPAAKQQGVYVAHHIAAKLGHRRAPTSFRYRHFGSLATIGRKRAVVDLG 373
Query: 454 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+V L I S A++ L +R VG +WL
Sbjct: 374 WVRFSGLAAWILWST---AHIYFLAGFRNRFVVGANWL 408
>gi|398352220|ref|YP_006397684.1| NADH dehydrogenase-like protein YumB [Sinorhizobium fredii USDA
257]
gi|390127546|gb|AFL50927.1| NADH dehydrogenase-like protein YumB [Sinorhizobium fredii USDA
257]
Length = 438
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 167/393 (42%), Gaps = 57/393 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVD 135
K +PR+ ILG GFGGL A+ L + P +V ++D+ +F+P+LY++ + +
Sbjct: 23 KHRPRVVILGAGFGGLNAAMALR-------RAPAEVTVIDRRNYHLFQPLLYQVATAGLS 75
Query: 136 AWEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+IA +L+ + D+V+ + + V G + YD+
Sbjct: 76 PAQIAMPIRRILSRQSNATVLMDKVEAVDTAARCVVTGSRR--------------IPYDY 121
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFERLEEKGIVQAINV 253
L+++ GA A+ A T+ DA + R LS ER E ++ + Q +
Sbjct: 122 LIVATGARHTYFGNDAWADHAPGLKTITDATAIRARILSAFER--AEVTDDARLRQTLLT 179
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP 308
+ T A+ LS R + VR RR+ A V E+G A+P
Sbjct: 180 FVVVGGGPTGVELAGAIAELSRRTI-------VRDFRRIDSSSARVVLVEAGERILPAMP 232
Query: 309 ---NIAADKNSDKYILE--LQPAIKGLE-SQIFEAD-------LVLWTVGSKPLLPHVEP 355
+ A + ++ +E L A+ G + S + AD +LW G +
Sbjct: 233 PCLSRKAQRQLERLGVEVLLGNAVAGCDDSGVRLADGTEIGSACILWAAGV------MAS 286
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ + G+ D L GH +IF +GD++++ D++GRP+P A A Q +
Sbjct: 287 RAAKWIGAAADRAGRVLVDRRLNPPGHDKIFVIGDTASVTDAAGRPVPGVAPAAKQMGRY 346
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
A + + R PFR+++ G + +GR A
Sbjct: 347 AAHAILGDMAGRQSAPFRYRDYGNLATIGRKAA 379
>gi|159037868|ref|YP_001537121.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Salinispora arenicola CNS-205]
gi|157916703|gb|ABV98130.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Salinispora arenicola CNS-205]
Length = 433
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 186/431 (43%), Gaps = 42/431 (9%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPR+ I+G GF G + A L L + +++L++ ++ F++ P+L E+ +G V+A
Sbjct: 3 KPRVVIVGAGFAGYHAAKTLSRLA---KDQAEIVLLNTTDYFLYLPLLPEVAAGVVEATR 59
Query: 139 IAPRFADLLANTGVQFFKDRVKLLC-PSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I+ A L D V+L+ +DH+ + G T + YD LVL
Sbjct: 60 ISVPLAGTL---------DGVRLVVGEADHVDLQNRWV---GFTQPEGDRNRIAYDRLVL 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS---ELERRNFERLEEKG-----IVQ 249
++G+ KL +PG E+A F L +A V + EL + + E++ +V
Sbjct: 108 AVGSVNKLLPIPGVTEYAHGFRGLPEALYVHDHVVRQIELAEQATDPAEQRARSTFVVVG 167
Query: 250 AINVETTICPTGTP-GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIP 308
A T + G +R + S + + +L R + E + + +
Sbjct: 168 AGYTGTEVAAHGQLFTDRLVGQRSRSRLRPRWML--LDVAPRVLPELDRRMSDTAHQVLD 225
Query: 309 NIAAD-KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA 367
D + + +K + + ++W VG +P P V R
Sbjct: 226 RRGVDVRMGTSVAVASADGVKLTDGEFIPTCSLIWCVGVRPD-PFVAQLGLR------TE 278
Query: 368 RGQAETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNLWAAIN 425
+G+ TDE L V G P +FA GD++A+ D G+ TAQ A +Q N+ A+
Sbjct: 279 KGRLVTDEYLNVPGFPEVFACGDAAAVPDLAQPGQVCAMTAQHAQRQGKLVAHNVAASYG 338
Query: 426 DRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLK 485
P++ +LG ++ LG DAA +P ++L G + +L+ LP + R +
Sbjct: 339 QGTRRPYKHHDLGWVVDLGGRDAAANPL---KLSLAGLPAKVVTRGYHLLNLPGN--RAR 393
Query: 486 VGVSWLTKSAI 496
VG WL + +
Sbjct: 394 VGTDWLLDATL 404
>gi|419821929|ref|ZP_14345517.1| putative NAD-disulfide oxidoreductase [Bacillus atrophaeus C89]
gi|388473936|gb|EIM10671.1| putative NAD-disulfide oxidoreductase [Bacillus atrophaeus C89]
Length = 405
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 159/398 (39%), Gaps = 67/398 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 3 KPKIVILGAGYGGLMTVTRLTKQVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L G + YD+LV+
Sbjct: 61 CRYQIKDVINQSRVNFVQDTVKAIHIEER-------------KVVLAGGEL-PYDYLVIG 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK-----GIVQAINV 253
LGA P+ + G E+AFP + + + R R+ EL+ + EK IV
Sbjct: 107 LGAVPETFGIKGLKEYAFPIANI-NTSRQLREHIELQFATYNTEAEKRPDRLTIVVGGAG 165
Query: 254 ETTICPTGTPGNR--------------------EAALKVLSARKVQLVLGYFVRCIRRVG 293
T I G NR EAA VL +LV Y V + G
Sbjct: 166 FTGIEFLGELANRVPELCKEYDIDRSLVRIVCVEAAPTVLPGFDPELV-DYAVHYLEGKG 224
Query: 294 -EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 352
EF+ E PN D+ E + ++ V+W G + P
Sbjct: 225 IEFKIGTAVQE--CTPNGVTVGKKDE------------EPEQIQSQTVVWAAGVRG-HPI 269
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQ 411
VE N RG+ + + L GH +F LGDSS + + + RP P TAQ+A Q
Sbjct: 270 VEEAGFE------NMRGRVKVNTDLRAPGHDNVFILGDSSLFINEETDRPYPPTAQIAMQ 323
Query: 412 QADFAGWNLWAAINDRPLL-PFRFQNLGEMMILGRNDA 448
Q + N+ I L F+ G + LG +DA
Sbjct: 324 QGETVAKNIGRLIKGGGQLEEFKPDIKGTVASLGEHDA 361
>gi|16804427|ref|NP_465912.1| hypothetical protein lmo2389 [Listeria monocytogenes EGD-e]
gi|254829546|ref|ZP_05234233.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL N3-165]
gi|284802831|ref|YP_003414696.1| hypothetical protein LM5578_2588 [Listeria monocytogenes 08-5578]
gi|284995973|ref|YP_003417741.1| hypothetical protein LM5923_2538 [Listeria monocytogenes 08-5923]
gi|386044692|ref|YP_005963497.1| hypothetical protein [Listeria monocytogenes 10403S]
gi|386051359|ref|YP_005969350.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL R2-561]
gi|386054581|ref|YP_005972139.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes Finland 1998]
gi|404284883|ref|YP_006685780.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC2372]
gi|404411633|ref|YP_006697221.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC5850]
gi|404414411|ref|YP_006699998.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC7179]
gi|405759438|ref|YP_006688714.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes SLCC2479]
gi|16411877|emb|CAD00467.1| lmo2389 [Listeria monocytogenes EGD-e]
gi|258601961|gb|EEW15286.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL N3-165]
gi|284058393|gb|ADB69334.1| hypothetical protein LM5578_2588 [Listeria monocytogenes 08-5578]
gi|284061440|gb|ADB72379.1| hypothetical protein LM5923_2538 [Listeria monocytogenes 08-5923]
gi|345537926|gb|AEO07366.1| hypothetical protein LMRG_02734 [Listeria monocytogenes 10403S]
gi|346425205|gb|AEO26730.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes FSL R2-561]
gi|346647232|gb|AEO39857.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes Finland 1998]
gi|404231459|emb|CBY52863.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC5850]
gi|404234385|emb|CBY55788.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC2372]
gi|404237320|emb|CBY58722.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC2479]
gi|404240110|emb|CBY61511.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Listeria monocytogenes SLCC7179]
gi|441472166|emb|CCQ21921.1| NADH dehydrogenase-like protein yumB [Listeria monocytogenes]
gi|441475307|emb|CCQ25061.1| NADH dehydrogenase-like protein yumB [Listeria monocytogenes N53-1]
Length = 403
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 172/389 (44%), Gaps = 52/389 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ +T F +D V + + TV L++ + YD+L+++
Sbjct: 59 LMYPLDKVVNDTKTTFIQDTVVKINKDEK-------------TVTLDANGDISYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG+E + + G E+AF +++E ++ R + E K + TI
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKI--------RAHIEAQFAKWKTDPRDELLTII 157
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-------RCI----RRVGEFEASVKQPESGAI 307
G L L+ R +LV Y V C+ + + +F+A + G +
Sbjct: 158 VGGAGFTGIEFLGELTNRIPELVKQYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGVGVL 217
Query: 308 PNIAADKNSDKYILELQP-AIKGLESQI----FEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + + K + E +K ES+ +A ++W G + N+ +
Sbjct: 218 EDRGVEFHVGKPVKEATADGVKYAESENEVREIKAATIIWAAGVR--------GNSVIEA 269
Query: 363 LPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNL 420
A RG+ + + L V G+ I +GD S + + ++ RP P TAQ+A QQAD A NL
Sbjct: 270 SGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAAVNL 329
Query: 421 WAAIN-DRPLLPFRFQNLGEMMILGRNDA 448
+ + L F + G + LG NDA
Sbjct: 330 AKLVKGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|398813400|ref|ZP_10572097.1| NADH dehydrogenase, FAD-containing subunit [Brevibacillus sp. BC25]
gi|398038824|gb|EJL31976.1| NADH dehydrogenase, FAD-containing subunit [Brevibacillus sp. BC25]
Length = 396
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 153/380 (40%), Gaps = 69/380 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GGL T L+L+ + ++ ++ LV++ L+E +G A
Sbjct: 4 PKILILGAGYGGLLTTLQLQKKLNYNE--AEITLVNKHNYHYITTWLHEPAAGTAPADHA 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L V F K V+ + + TV LE+G ++ YD+LV+ L
Sbjct: 62 RVSLDGILNKDKVNFVKGTVQAIQSEEQ-------------TVTLENGEVLSYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF----ERLEEKGIVQAINVET 255
G+EP+ + G E AF ++ +A R R+ E F +R + V T
Sbjct: 109 GSEPETFGIEGLKEHAFSIRSI-NAVRNIREHIEYMFSKFKNEPDRTDYLTFVVGGAGFT 167
Query: 256 TICPTGTPGNR--------------------EAALKVLSARKVQLVLGYFVRCIRRVGEF 295
I G G+R EAA L +L+ Y + + R G
Sbjct: 168 GIEFCGELGDRLPELCREFDVDPELVKVYCIEAAPTALPGFDPELIQ-YAMDVLERKG-I 225
Query: 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
E + P P D +L IK + V+W G +
Sbjct: 226 EFKIGTPIKQCTP--------DGVLLATGEEIK--------SKTVIWAAGVR-------- 261
Query: 356 PNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
N+ + RG+ + DE L GH +F +GD + + + GRP P TAQ+A Q+ +
Sbjct: 262 GNSIVEKAGFEVMRGRVKVDEYLRAPGHENVFVVGDCALIFNEEGRPYPPTAQIAVQEGE 321
Query: 415 FAGWNLWAAINDRPLLPFRF 434
G NL A + R LP +F
Sbjct: 322 TLGENLAALV--RGDLPQKF 339
>gi|302543635|ref|ZP_07295977.1| putative NADH dehydrogenase [Streptomyces hygroscopicus ATCC 53653]
gi|302461253|gb|EFL24346.1| putative NADH dehydrogenase [Streptomyces himastatinicus ATCC
53653]
Length = 481
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 107/439 (24%), Positives = 183/439 (41%), Gaps = 48/439 (10%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKPMLYELLSGEV 134
K+ RI ++GGG+ G+YTALRL+ + ++ + QV++VD ++P L E +G +
Sbjct: 32 KEPARILVVGGGYVGMYTALRLQRKLKRELRHGAVQVIVVDPEPYMTYQPFLPEAAAGSI 91
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ +L + Q V + +A GT +E V YD
Sbjct: 92 SPRHVVVPLRRVLGD--CQVIIGEVTAIQHGKRTATIRTLATEEEGTGSIE----VHYDE 145
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE 254
LVL+ G+ + VPG AE F T+E+A L E+L+ + +V
Sbjct: 146 LVLAPGSVSRTLPVPGLAETGIGFKTVEEAI-------GLRNHVLEQLDIASSTRDPDVR 198
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE-------FEASVK-QPESG- 305
+ G A ++ L +++ + Y VR + EA+ + PE G
Sbjct: 199 DSALTFVFVGGGYAGVEALG--ELEDMARYAVRYYHNIAPEDLKWILVEATNRILPEVGE 256
Query: 306 AIPNIAADKNSDKYI-LELQPAIKGLESQI--------FEADLVLWTVGSKPLLPHVEPP 356
+ A + + I + L+ + + +I F ++WT G KP P
Sbjct: 257 EMGRYAVSELRSRNIDVRLETRLDSCQDRIAVLSDGSRFPTRTLVWTAGVKP------SP 310
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS----GRPLPATAQVAFQQ 412
DLPLN RG+ L V G +A GD++++ D + G AQ A +Q
Sbjct: 311 ILAATDLPLNDRGRLACTAALQVDGVEHAWAAGDAASVPDRTAAEPGAVCAPNAQHAVRQ 370
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
A NL A+++ RPL + + +G + LG + + + G G ++
Sbjct: 371 AKVLAENLLASLDGRPLSDYEHKYVGSVASLGLHRGV---AHLYGRKAKGYPAWFMHRVY 427
Query: 473 YLIRLPTDEHRLKVGVSWL 491
+L R+PT + +V W+
Sbjct: 428 HLSRVPTFNRKARVLAEWI 446
>gi|149176922|ref|ZP_01855531.1| NADH dehydrogenase [Planctomyces maris DSM 8797]
gi|148844177|gb|EDL58531.1| NADH dehydrogenase [Planctomyces maris DSM 8797]
Length = 448
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 166/389 (42%), Gaps = 53/389 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+GGGF GL AL L + +V LVD+ +F+P+LY++ + +IA
Sbjct: 15 RVLIIGGGFAGLNAALELGGIA-----GVEVTLVDRHNYHLFQPLLYQVAMAGLSPADIA 69
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
LL+ +++ LL ++ + + G G + E+D+LVL+ G
Sbjct: 70 TPIRSLLSA-----YRNTSVLLGEAESIDLPGQKVKFDFGEL--------EFDYLVLACG 116
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTICP 259
A ++A T+ A + ++ LS E + ER+ + + T +
Sbjct: 117 ATHSYFGHNEWEKYAPGLKTISQATEIRKRVLSAFE--HAERVTDPD--EQKKYLTYVIV 172
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-AIPNIAADKNSDK 318
G P E A + + L R RR+ V E+G I + +++ S++
Sbjct: 173 GGGPTGVELAGAIGEMSRFTLS-----RDFRRINPSHTRVILVEAGPRILPMFSEQQSNR 227
Query: 319 YILELQP--------------AIKGLE--SQIFEADLVLWTVGSKPLLPHVEPPN-NRLH 361
+L+ +G+E + A VLW G VE +
Sbjct: 228 AARDLEKLGVQIWTSSVVTNINDEGVELGDERIRAATVLWAAG-------VEASELGQAG 280
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 421
+ ++ RG+ + L ++G+P +F GD ++ +G PLP TA VA QQ F G +
Sbjct: 281 GMHVDNRGRVLVEPDLSLEGYPNVFVAGDQASYTHQTGSPLPGTAPVALQQGRFIGKTIR 340
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAAV 450
+ +P F F++ G+M +GR+ A V
Sbjct: 341 NEVKGKPRSKFHFRDKGQMATIGRSRAIV 369
>gi|440694350|ref|ZP_20876976.1| pyridine nucleotide-disulfide oxidoreductase [Streptomyces
turgidiscabies Car8]
gi|440283652|gb|ELP70884.1| pyridine nucleotide-disulfide oxidoreductase [Streptomyces
turgidiscabies Car8]
Length = 392
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 152/373 (40%), Gaps = 47/373 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I +LG G+ GL++A+RL + K + LV+ RFV + ++++ +G+ A
Sbjct: 6 HIVVLGAGYTGLFSAIRLAHRTRRTGVK--ITLVNPESRFVERLRMHQIAAGQELADHQI 63
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P DLLA TGV F + + P + ++ + YD LV +LG
Sbjct: 64 P---DLLAGTGVTFVQGTATAIDPEAR-------------QITVDGTETLGYDTLVYALG 107
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
+ VPGA AF + A R +L+E+ G + I T I +
Sbjct: 108 SSTDTGKVPGADTQAFTLNNPAIAGRFAARLTEVAASGGTVTVCGGGLTGIEAATEIAES 167
Query: 261 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI 320
PG L V + G A + GA+ + + +
Sbjct: 168 -HPG-----LDVT-----------LISLDEPGGMMGAKARAYLYGALDRLGVTLETGARV 210
Query: 321 LELQP-AIKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETL 377
++ P A++ + ++ +D LWT G K PL + + RG D TL
Sbjct: 211 TKVLPDAVELADGRLVRSDACLWTTGVKVSPLAADA--------GIATDDRGLILVDATL 262
Query: 378 CVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNL 437
HP I A+GD++A+R + G+ + T Q A + + + + + PFRF
Sbjct: 263 RSVSHPEIHAIGDAAAVRLAWGQ-IHGTCQSGLPTAQYTADTIARLVRGKAVKPFRFGYF 321
Query: 438 GEMMILGRNDAAV 450
+ + LGR+DA +
Sbjct: 322 HQPVSLGRHDAVI 334
>gi|296271151|ref|YP_003653783.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermobispora bispora DSM 43833]
gi|296093938|gb|ADG89890.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermobispora bispora DSM 43833]
Length = 396
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 161/377 (42%), Gaps = 55/377 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LGGG+ G+ +A+RL + +V+LV+ S+RF + L+++ +G+ A
Sbjct: 6 IVVLGGGYTGVMSAIRLARR--TRRTRTRVILVNPSDRFTERLRLHQIATGQRTADH--- 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDH-LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
R LL TG +F + R L P + + G GG L YD+LV +LG
Sbjct: 61 RIPALLHGTGAEFVRGRATHLDPERREVRIAG-----DGGERTLG------YDYLVYALG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
A V PG A E A R +L+EL R G V + +
Sbjct: 110 AVTDTSV-PGVDAHAHTLDDAEAAHRFAERLAELTHRG-------GTVAVVG-------S 154
Query: 261 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE------ASVKQPESGAIPNIAADK 314
G G AA ++ G+ + +G E A ++ GA+ + +
Sbjct: 155 GLTGVEAAA---------EIAEGHPNLHVTLLGSAEPGSMMGAKARRHLLGALDRLGVEI 205
Query: 315 NSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAET 373
+ + ++ P A++ + D VLWT G V P R L ++ RG+
Sbjct: 206 CTGVRVTKVPPNAVELNGGETVPVDAVLWTAGV------VAAPLARAAGLTVDDRGRVVV 259
Query: 374 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 433
D TL HP ++A+GD++A+R S G + T Q A +A + + + PFR
Sbjct: 260 DATLASVSHPSVYAVGDAAAIRQSWGM-IHGTCQSGVPSAAYAADAIARRLRGKRPRPFR 318
Query: 434 FQNLGEMMILGRNDAAV 450
F + + + LGR DA V
Sbjct: 319 FGYVHQPVSLGRRDAVV 335
>gi|311069706|ref|YP_003974629.1| NAD-disulfide oxidoreductase [Bacillus atrophaeus 1942]
gi|310870223|gb|ADP33698.1| putative NAD-disulfide oxidoreductase [Bacillus atrophaeus 1942]
Length = 407
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 159/398 (39%), Gaps = 67/398 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T RL V +D + LV++ ++E +G +
Sbjct: 5 KPKIVILGAGYGGLMTVTRLTKQVGPND--ADITLVNKHNYHYETTWMHEASAGTLHHDR 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ D++ + V F +D VK + + V+L G + YD+LV+
Sbjct: 63 CRYQIKDVINQSRVNFVQDTVKAIHIEER-------------KVVLAGGEL-PYDYLVIG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK-----GIVQAINV 253
LGA P+ + G E+AFP + + + R R+ EL+ + EK IV
Sbjct: 109 LGAVPETFGIKGLKEYAFPIANI-NTSRQLREHIELQFATYNTEAEKRPDRLTIVVGGAG 167
Query: 254 ETTICPTGTPGNR--------------------EAALKVLSARKVQLVLGYFVRCIRRVG 293
T I G NR EAA VL +LV Y V + G
Sbjct: 168 FTGIEFLGELANRVPELCKEYDIDRSLVRIVCVEAAPTVLPGFDPELV-DYAVHYLEGKG 226
Query: 294 -EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 352
EF+ E PN D+ E + ++ V+W G + P
Sbjct: 227 IEFKIGTAVQE--CTPNGVTVGKKDE------------EPEQIQSQTVVWAAGVRG-HPI 271
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQ 411
VE N RG+ + + L GH +F LGDSS + + + RP P TAQ+A Q
Sbjct: 272 VEEAGFE------NMRGRVKVNTDLRAPGHDNVFILGDSSLFINEETDRPYPPTAQIAMQ 325
Query: 412 QADFAGWNLWAAINDRPLL-PFRFQNLGEMMILGRNDA 448
Q + N+ I L F+ G + LG +DA
Sbjct: 326 QGETVAKNIGRLIKGGGQLEEFKPDIKGTVASLGEHDA 363
>gi|288959430|ref|YP_003449771.1| NADH dehydrogenase [Azospirillum sp. B510]
gi|288911738|dbj|BAI73227.1| NADH dehydrogenase [Azospirillum sp. B510]
Length = 438
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 156/385 (40%), Gaps = 37/385 (9%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I I+GGG GL A RL V Q+ L+D+S V+KPML+ +G W I
Sbjct: 14 PHIRIVGGGVAGLILATRLGH-VMGSRGTAQISLIDRSPTHVWKPMLHTFAAG---TWNI 69
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L + G FK + D G +A + ++YD L+L+
Sbjct: 70 YQQQVQFLVHAGSHHFKYIPGEMAGLDREGRRLRLAPLRANGETIADARDLDYDLLILAT 129
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
G+ +PG AE + +A + KL R+F ++ +
Sbjct: 130 GSRANDFAIPGVAEHCHFIDSQREADAFNDKLRTHVGRSF-----------LHGDGIRIA 178
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRR-------------VGEFEASVKQPESGA 306
G G L R V+L GY IR + F V +
Sbjct: 179 IGGGGATGVELAAELTRMVELAGGYGEVDIRSRLRITLLESGPRILAAFPERVAASATEQ 238
Query: 307 IPNIAADKNSDKYILELQPAIKGLES-QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
+ + D I+ LES + EADL +W G + E N L L
Sbjct: 239 LRGLGVDVRVGVKIVGADAGGYRLESGERIEADLKVWAAGIRA----SEAVGN--CGLEL 292
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAI 424
N Q L + IFA+GD S+L + + RPLP+TAQVA QQA +L + +
Sbjct: 293 NRARQIVVAPNLQARNDDAIFAVGDCSSLIPEGAERPLPSTAQVANQQALHLVAHLPSWV 352
Query: 425 ND-RPLLPFRFQNLGEMMILGRNDA 448
++ RP+ PF F++LG ++ LG +A
Sbjct: 353 SERRPVPPFVFRDLGALVSLGEYNA 377
>gi|47095868|ref|ZP_00233472.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes str. 1/2a F6854]
gi|254914064|ref|ZP_05264076.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes J2818]
gi|254938379|ref|ZP_05270076.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes F6900]
gi|386048052|ref|YP_005966384.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes J0161]
gi|47015745|gb|EAL06674.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes str. 1/2a F6854]
gi|258610992|gb|EEW23600.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes F6900]
gi|293592083|gb|EFG00418.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria monocytogenes J2818]
gi|345535043|gb|AEO04484.1| pyridine nucleotide-disulfide oxidoreductase [Listeria
monocytogenes J0161]
Length = 403
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 172/389 (44%), Gaps = 52/389 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ +T F +D V + + TV L++ + YD+L+++
Sbjct: 59 LMYPLDKVVNDTKTTFVQDTVVKINKDEK-------------TVTLDANGDISYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG+E + + G E+AF +++E ++ R + E K + TI
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKI--------RAHIEAQFAKWKTDPRDELLTII 157
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-------RCI----RRVGEFEASVKQPESGAI 307
G L L+ R +LV Y V C+ + + +F+A + G +
Sbjct: 158 VGGAGFTGIEFLGELTNRIPELVKQYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGVGVL 217
Query: 308 PNIAADKNSDKYILELQP-AIKGLESQI----FEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + + K + E +K ES+ +A ++W G + N+ +
Sbjct: 218 EDRGVEFHVGKPVKEATADGVKYAESENEVREIKAATIIWAAGVR--------GNSVIEA 269
Query: 363 LPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNL 420
A RG+ + + L V G+ I +GD S + + ++ RP P TAQ+A QQAD A NL
Sbjct: 270 SGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAAVNL 329
Query: 421 WAAIN-DRPLLPFRFQNLGEMMILGRNDA 448
+ + L F + G + LG NDA
Sbjct: 330 AKLVKGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|425471841|ref|ZP_18850692.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9701]
gi|389882200|emb|CCI37310.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9701]
Length = 458
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 180/446 (40%), Gaps = 74/446 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE-- 254
++ G +A T+EDA + R++ FE+ E++ I+ E
Sbjct: 105 IATGVSHHYFGNEQWQPYAPGLKTIEDAVEMRRRI----YLAFEKAEKE-----IDAEKR 155
Query: 255 ----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG----- 305
T + G P E L+ ++ G ++ EA + E
Sbjct: 156 QALLTFVIVGGGPTGVE-----LAGAIAEIAHGALRSDFHQINPTEAKILLLEGMDRVLP 210
Query: 306 -AIPNIAADKNSDKYILELQPAIKGLESQIFE---------------ADLVLWTVGSKP- 348
P+++A + L + + + I E A+ +LW G K
Sbjct: 211 PYSPDLSAKAAASLIKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETILWAAGVKAS 270
Query: 349 ----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
+L N L+ G+ + L + G+ IF +GD + +PLP
Sbjct: 271 RMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYANIFVIGDLANFAHQGDKPLPG 323
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 464
A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+ G I
Sbjct: 324 IAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK---FSGFI 380
Query: 465 GHSARKLAYLIRLPTDEHRLKVGVSW 490
A++ L +++L V V W
Sbjct: 381 AWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|374320150|ref|YP_005073279.1| NADH dehydrogenase-like protein yjlD [Paenibacillus terrae HPL-003]
gi|357199159|gb|AET57056.1| NADH dehydrogenase-like protein yjlD [Paenibacillus terrae HPL-003]
Length = 396
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 101/417 (24%), Positives = 156/417 (37%), Gaps = 113/417 (27%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I I+G G+GG+ TA +L+ + ++ V LV++ + L+ +G
Sbjct: 5 PKIVIVGAGYGGILTAQQLQKELKHNE--ADVTLVNRHDYHYITTHLHMPAAGTDTIEHS 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ L+ V K VK + P + ++LE G + +D+LV+ L
Sbjct: 63 RIPISQLIDEFKVDLIKGTVKEIIPKEK-------------KIVLEDGSL-SFDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFP--------------------------------------FSTL 221
G EP+ + G +FA FS +
Sbjct: 109 GGEPETFGIQGMDKFALTIRSINSVRLIREHIEYQLALYKNDGNPGRLNFVVGGAGFSGI 168
Query: 222 EDACRVDRKLSELERR---NFERLEEKGIVQAINVETTICPTGTPGNR----EAALKVLS 274
E + +L +L R +F R +Q INVE PT PG E A+ VL
Sbjct: 169 EFVAELADRLPQLARAYDIDFNR------IQIINVEA--APTALPGFDPELVEYAMDVLK 220
Query: 275 ARKVQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 333
+ V +G ++ C+ E G I E +
Sbjct: 221 RKGVTFRIGVPIKECL-------------EDGVIVG---------------------EGE 246
Query: 334 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS 392
EA V+WT G + N + RG+ + D+ L H IF +GDSS
Sbjct: 247 KIEACTVVWTGGIRG--------NGLIEKAGFEVMRGRVKIDDFLRAPDHDDIFIIGDSS 298
Query: 393 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
+ + GRP P TAQ+A QQ NL A + + L F F N G + LG+ +A
Sbjct: 299 LMFNPEGRPYPPTAQIAMQQGVLCAKNLAATLRKKELHKFVFSNKGTVASLGKGEAV 355
>gi|170700340|ref|ZP_02891352.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria IOP40-10]
gi|170134774|gb|EDT03090.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria IOP40-10]
Length = 433
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 105/390 (26%), Positives = 158/390 (40%), Gaps = 48/390 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D +
Sbjct: 9 RIVIVGGGIAGLQLATRLGERLGRSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 67
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F + G + +K L + V + G +LL++ + EYD L+L+LG
Sbjct: 68 VIFLAHARDHGYTYQPGELKGLDRARRR-VQLSEIRSPDGELLLDAREL-EYDVLILALG 125
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ VPG E + + + A + L R+ R E I
Sbjct: 126 SQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEP--------FRVAIVGA 177
Query: 261 GTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
G G AA L+V A + +L L R + F + + I
Sbjct: 178 GATGVELAAELSRLLEVAQAYGDATVRERLQLTLLESGPRILAAFPPRISASAQRRLEQI 237
Query: 311 -----------AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
+AD N Y + EADL++W G K
Sbjct: 238 GIHVLTSTRVTSADANGFHYG----------DGSFAEADLMVWAAGVK-----ASDFMQA 282
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGW 418
L L N Q TL +FA+GD ++L+ D RPLP TAQVA QQA+
Sbjct: 283 LGGLDTNRANQIMVGPTLQATADEHVFAIGDCASLQPDGQERPLPPTAQVATQQAEHLAK 342
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+L A ++ +PL PF F + G ++ + DA
Sbjct: 343 HLPAWLDGKPLPPFAFHDFGALVSISDYDA 372
>gi|290891444|ref|ZP_06554503.1| hypothetical protein AWRIB429_1893 [Oenococcus oeni AWRIB429]
gi|419759129|ref|ZP_14285435.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB304]
gi|419857312|ref|ZP_14380022.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB202]
gi|421183975|ref|ZP_15641404.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB318]
gi|421188563|ref|ZP_15645900.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB419]
gi|421195750|ref|ZP_15652953.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB568]
gi|421196227|ref|ZP_15653416.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB576]
gi|290478886|gb|EFD87551.1| hypothetical protein AWRIB429_1893 [Oenococcus oeni AWRIB429]
gi|399904051|gb|EJN91513.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB304]
gi|399965043|gb|EJN99670.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB419]
gi|399968612|gb|EJO03045.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB318]
gi|399974876|gb|EJO08945.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB568]
gi|399977427|gb|EJO11407.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB576]
gi|410498377|gb|EKP89833.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB202]
Length = 390
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 167/430 (38%), Gaps = 90/430 (20%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LG G+ GL R+ + +++L++++ L+E+ G +I+
Sbjct: 4 IVVLGAGYAGL----RVVRELVDHKANAKIVLINKNSYHYESTQLHEVAIGSKSPNDISL 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ N V F +D V + + V L+S V YD+LV LG
Sbjct: 60 NIRDVIGNQ-VDFIEDEVVKIDRQNK-------------KVELKSKSTVSYDYLVTCLGF 105
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
E + + GA EF P ++ A ++L E R F+ ++ ++ +C G
Sbjct: 106 ESETFGIKGADEFGLPIIDIDTALVAKKRLEETLAR-FQSSHDEN-----DLHIAVCGAG 159
Query: 262 ----------------------TPGNR------EAALKVLSARKVQLVLGYFVRCIRRVG 293
P + EAA KVL +LV Y V ++ G
Sbjct: 160 FTSIEYIGELLHRLPDFVKRFNLPAEKIKIYCIEAAPKVLPMFDPKLV-DYAVNYLKNQG 218
Query: 294 -EF--EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350
EF E S+ + + GA+ I+ DK F A+ ++WT G K
Sbjct: 219 VEFYTETSITEVKKGAV--ISKDK-------------------AFNANTIIWTTGVKG-- 255
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
HV + R + L P F +GD SA+ GR P T Q++
Sbjct: 256 SHVINDSGYTQ-----KRNRVAVQNDLSSSDDPNEFIIGDVSAVPSPDGRFYPTTGQISV 310
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
QA A N+ A +N++ PF + +LG + LG + SF+ L G K
Sbjct: 311 AQATLAASNIIAKLNNQKTSPFTYHSLGTVCSLGPTNGVAELSFMGHWKLKG------HK 364
Query: 471 LAYLIRLPTD 480
+A L R+ D
Sbjct: 365 VAPLKRIVND 374
>gi|399059901|ref|ZP_10745357.1| NADH dehydrogenase, FAD-containing subunit [Novosphingobium sp.
AP12]
gi|398038692|gb|EJL31846.1| NADH dehydrogenase, FAD-containing subunit [Novosphingobium sp.
AP12]
Length = 439
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 161/391 (41%), Gaps = 41/391 (10%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++K +I I+GGG GL A RL + + K+ ++LVD++ ++KP+L+E+ +G +DA
Sbjct: 4 QQKTQIVIVGGGAAGLELATRLGARYGR--KRHDIILVDENRTHIWKPLLHEVAAGSLDA 61
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV------ 190
+ G ++FK + G++ H +L + G V
Sbjct: 62 NLDEVGYRGHCYRWGYRYFKGSLA--------GIDRAAQRIHLAPILDDRGSEVVGPQTL 113
Query: 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQ 249
YD+LVL+ G+ PG E DA R DR L + R + + G
Sbjct: 114 RYDYLVLAYGSVTNDFGTPGVKENCIFLDRRVDADRFRDRLLDQCLRVSRAMTNDGG--S 171
Query: 250 AINVETTICPTGTPGNREAALKVLSARKV--QLVLGYFVRCIRRVGEFEASVK----QPE 303
V +I G G E A ++ SA L F R V EA + PE
Sbjct: 172 DARVRVSIVGGGATGV-ELAAELFSAADALSHYGLEVFDRSRLEVSLIEAGPRILPALPE 230
Query: 304 SGA------IPNIAADKNSDKYILE--LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
A + + + I+E Q + G ++ ADL +W G K P
Sbjct: 231 KLAESARHELETLGVRVRTATPIVESTAQGMVTG-SGEMIAADLQVWAAGVK-----ARP 284
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQAD 414
L L + GQ TL P++FALGD + L RP+P AQ A Q A
Sbjct: 285 IAGGLDGLETSRSGQVVVLPTLQSATDPKVFALGDCAYCLLPGRDRPIPPRAQAAHQMAT 344
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
A NL + RPL F +Q+ G ++ L R
Sbjct: 345 TAYHNLRRLMEGRPLKAFDYQDRGSLVSLSR 375
>gi|315283482|ref|ZP_07871662.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria marthii FSL S4-120]
gi|313612873|gb|EFR86835.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria marthii FSL S4-120]
Length = 403
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 171/389 (43%), Gaps = 52/389 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ +T F +D V + + TV L++ + YD+L++
Sbjct: 59 LMYPLDKVVNDTKTTFIQDTVVKINKDEK-------------TVTLDANGDISYDYLLIG 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG+E + + G E+AF +++E ++ R + E K + TI
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKI--------RAHIEAQFAKWKTDPRDELLTII 157
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-------RCI----RRVGEFEASVKQPESGAI 307
G L L+ R +LV Y V C+ + + +F+A + G +
Sbjct: 158 VGGAGFTGIEFLGELTNRIPELVKQYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGVGVL 217
Query: 308 PNIAADKNSDKYILELQP-AIKGLESQI----FEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + + K + E +K ES+ +A ++W G + N+ +
Sbjct: 218 EDRGVEFHVGKPVKEATADGVKYAESENEVREIKAATIIWAAGVR--------GNSVIEA 269
Query: 363 LPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNL 420
A RG+ + + L V G+ I +GD S + + ++ RP P TAQ+A QQAD A NL
Sbjct: 270 SGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAAVNL 329
Query: 421 WAAIN-DRPLLPFRFQNLGEMMILGRNDA 448
+ + L F + G + LG NDA
Sbjct: 330 AKLVQGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|374984509|ref|YP_004960004.1| NADH dehydrogenase [Streptomyces bingchenggensis BCW-1]
gi|297155161|gb|ADI04873.1| NADH dehydrogenase [Streptomyces bingchenggensis BCW-1]
Length = 441
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 111/439 (25%), Positives = 187/439 (42%), Gaps = 60/439 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G GF G Y A R S +D+ +++LV+ ++ F++ P+L ++ + ++ ++
Sbjct: 5 RIVIVGAGFAG-YQAARTLSRTLRDEA--EIVLVNPNDYFLYLPLLPQVAAAVLEPRRVS 61
Query: 141 PRFADLLANTGVQFFKDRV-------KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
L GV+ V + + +D G G M EYD
Sbjct: 62 ISLVQTLP--GVRLVLGEVDSVDLDARRINWTDPEGRRGRM----------------EYD 103
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAIN 252
LVLS+G+ KL +PG AE A F + +A + D + +LE + +A
Sbjct: 104 RLVLSVGSVNKLLRIPGVAEHAHGFRGMPEALYLRDHMIRQLE---LAGAADDPAERAAR 160
Query: 253 VETTICPTGTPGNREAALKVLS----ARKVQLVLG------YFVRCIRRV-GEFEASVKQ 301
+ G G AA VL AR+ + G + RV E + +
Sbjct: 161 RTFVVVGAGYTGTEVAAHGVLLTDALARRNAALRGAPPPRWLLIDIADRVLPELDRRLSD 220
Query: 302 PESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL-VLWTVGSKPLLPHVEPPNNRL 360
+ + + + E L++ F A ++W VG +P + +
Sbjct: 221 TADRVLTKRGVEIRTGTSVKEATKDGALLDTGEFIATRSLIWCVGVRP--------DPLV 272
Query: 361 HDLPL-NARGQAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPATAQVAFQQADFAG 417
DL L RG+ D L V GHP + A GD++A+ D + G+ P TAQ A +Q AG
Sbjct: 273 DDLGLPTERGRLCVDPYLAVPGHPEVLACGDAAAVPDLTRPGQFTPMTAQHAQRQGKVAG 332
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
N+ A + P++ +LG + LG A +P VTL GP+ + + +L+ +
Sbjct: 333 RNVAATLGYGTRRPYKHHDLGFTVDLGGVQGAANPLH---VTLSGPVANLVTRGYHLMAM 389
Query: 478 PTDEHRLKVGVSWLTKSAI 496
P + R++V WL + +
Sbjct: 390 PGN--RVRVATDWLIDAVL 406
>gi|379708389|ref|YP_005263594.1| putative NADH dehydrogenase [Nocardia cyriacigeorgica GUH-2]
gi|374845888|emb|CCF62958.1| putative NADH dehydrogenase [Nocardia cyriacigeorgica GUH-2]
Length = 392
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 158/376 (42%), Gaps = 53/376 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G G+ G+ A++L + ++ LV+ S+RF + +++ +G+ ++A
Sbjct: 7 RIVIVGAGYTGMLAAVQLARRT--RGRGVRITLVNPSDRFTERLRSHQIAAGQ----QLA 60
Query: 141 P-RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
R DL+ G+ F + RV + P+ V +++ + YD L+ +L
Sbjct: 61 DYRIPDLIDGAGIDFVRGRVTAIDPAAR-------------RVSVDATTELPYDELIYAL 107
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
G+ VPG AE A+ TL+D RR E V A +C
Sbjct: 108 GSRADTHRVPGVAEHAW---TLDD-----------PRRAHAFSERLATVAAHGGTVAVCG 153
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE----FEASVKQPESGAIPNIAADKN 315
G G EAA ++ + G V I GE A + A+ + +
Sbjct: 154 GGLTGI-EAATEIAESHA-----GARVSLIS-TGEPGAMMGARARAHLDRALDRLGITRR 206
Query: 316 SDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD 374
+ ++ P AI+ + ++ ADL LWT G + E + + RG D
Sbjct: 207 IGTPVAKVLPDAIELADGELLPADLTLWTAGVRVAGLAAES------GIATDERGLVLVD 260
Query: 375 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRF 434
TL HP I+A+GD++A+ GR + T Q A + + + +P+ PFRF
Sbjct: 261 PTLRSVSHPEIYAIGDAAAIDQPWGR-IHGTCQSGLPTAAYVADAIARRLRGKPVRPFRF 319
Query: 435 QNLGEMMILGRNDAAV 450
+ + LGR DA +
Sbjct: 320 GYFHQPVSLGRRDAVI 335
>gi|359793950|ref|ZP_09296680.1| NADH dehydrogenase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359249814|gb|EHK53382.1| NADH dehydrogenase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 443
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/422 (25%), Positives = 176/422 (41%), Gaps = 74/422 (17%)
Query: 57 GDLVVTSE--DESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLV 114
GD V+T D+ S+ P ++PR+ ILGGGFGGL AL L + V +V
Sbjct: 7 GDAVMTIAELDKPQSKAVAEP-TRRPRVVILGGGFGGLNAALGLR------NAPVDVTIV 59
Query: 115 DQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPM 174
D+ +F+P+LY++ + + +IA +LA K+ L+ + GV+
Sbjct: 60 DRRNYHLFQPLLYQVATAGLSPAQIAMPIRRILAGQ-----KNATVLMEKVE--GVD--- 109
Query: 175 ACTHGGTVLLESGLIVEYDWLVLSLGAEPKL-------DVVPGAAEFAFPFSTLEDACRV 227
G +L + + YD+L+++ GA + PG T+ DA +
Sbjct: 110 ---TGSRTVLTANRRLPYDYLIIATGARHAYFGHDDWENTAPG-------LKTIPDATEI 159
Query: 228 -DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 286
R LS E+ E E+ + + + T + G P E L+ V+L V
Sbjct: 160 RGRILSAFEK--AEVTEDPELRR--KLLTFVVIGGGPTGVE-----LAGAIVELARKAIV 210
Query: 287 RCIRRVGEFEASVKQPESG-----AIPNIAADKNSDKYILE-------LQPAIKGLES-- 332
R R + A V E+ A P +D S K LE L A+ +
Sbjct: 211 RDFRNIDSSTARVVLVEADKRLLTAFPEKLSD--SAKRQLERLGVEVKLGAAVAACDGNG 268
Query: 333 ------QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIF 386
Q + VLW G + + D+P + G+ D+ L V G ++
Sbjct: 269 VALSDGQRIASACVLWAAGV------MASRAAKWLDVPSDRAGRVIVDDHLHVPGREGVY 322
Query: 387 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 446
+GD++ ++ + GRP+P A A Q + + A + +P+ PFR+ + G + +GR
Sbjct: 323 VIGDTACVKGTDGRPIPGVAPAAKQMGRYVAGLIRAGLAGKPVAPFRYSDYGNLATIGRK 382
Query: 447 DA 448
A
Sbjct: 383 AA 384
>gi|256424048|ref|YP_003124701.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chitinophaga pinensis DSM 2588]
gi|256038956|gb|ACU62500.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Chitinophaga pinensis DSM 2588]
Length = 448
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 110/434 (25%), Positives = 183/434 (42%), Gaps = 61/434 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ I+GGGF G+ A +L Q DK+ + LVD++ F P++Y+L +G ++ I
Sbjct: 12 KVVIIGGGFAGINLAQKL-----QRDKRFDITLVDKNNYNFFPPLIYQLATGFLETSSIC 66
Query: 141 PRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
F L + + F + + P+ H T+ L +G + +YD+LV +
Sbjct: 67 YPFRKLFRDKPNLHFHMGEFQKVDPAAH-------------TIYLNNGEL-QYDYLVFAT 112
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGI----VQAINVET 255
G E + A P T+ DA E+ R +RLE I ++ + T
Sbjct: 113 GTETNYFGNDNIKKRAIPMKTVNDAL-------EMRNRLLKRLEIASITKDPIERKKLTT 165
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS------VKQPESGAIP- 308
+ G P E + + RK Y +R + E E V ES P
Sbjct: 166 IVIAGGGPTGVEVSGMLAELRK------YVIR--KDYPELEGQGGEIYLVNGGESLLEPM 217
Query: 309 NIAADKNSDKYILELQPAIKGLESQI--FEADLVLWTVGS---KPLLPHVEPPNNRLHD- 362
+ + K++ + L IK L++++ F D V+ G L LH+
Sbjct: 218 SPKSQKHTYNALRRLGVKIK-LKTRVKDFVDDQVILNNGDTIHTSTLIWAAGVTAYLHEG 276
Query: 363 LPLNARG---QAETDETLCVKGHPRIFALGDSSALRDSSGRP--LPATAQVAFQQADFAG 417
+P+ + G + TD V G I+A+GD+ + S P P AQVA QQ
Sbjct: 277 IPIASTGPGRRMMTDAFNRVIGVDDIYAIGDTCLTKTDSNFPEGHPQLAQVALQQGRNLA 336
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS-PSFVEGVTLDGPIGHSARKLAYLIR 476
N ++++ L PF + + G M I+GRN+A PS + +G I + +++
Sbjct: 337 KNFSLMVDNKQLKPFSYVDKGTMAIIGRNNAVADIPS--PKLHFNGFIAWAMWLFVHVMA 394
Query: 477 LPTDEHRLKVGVSW 490
L +RLK +W
Sbjct: 395 LINYRNRLKTMYNW 408
>gi|385674816|ref|ZP_10048744.1| NADH dehydrogenase [Amycolatopsis sp. ATCC 39116]
Length = 434
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 109/464 (23%), Positives = 175/464 (37%), Gaps = 116/464 (25%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG+ G TA +L + ++ Q+ ++D ++P L E +G V+ +
Sbjct: 6 RIVIIGGGYVGATTARQLRKRLTAEEA--QLTVIDPRSYMTYQPFLAEAAAGSVEPRHVV 63
Query: 141 PRFADLLAN--------TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
++L TGV V L H+ G Y
Sbjct: 64 VPLREVLPGCKVMAAEATGVDTTSKSVTLRVADGHVEQLG-------------------Y 104
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC---------------RVDRKL------ 231
D LV++ G+ K +PG AE F TLE+A +DR+L
Sbjct: 105 DILVVAPGSVSKTLPIPGLAEHGIGFKTLEEAVYLRNHVLSRLDLAASTMDRELRRKLLT 164
Query: 232 --------------SELERRNFERLEEKGIVQA------INVETTICPTGTPGNREAALK 271
+ELE L++ GI ++ + I P + L
Sbjct: 165 FVFVGGGYAGIEAMAELEDMTRHALKDYGIDRSELRWVLVEAADRIMPEVSSSLASYTLD 224
Query: 272 VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 331
VL+ R ++ LG ++K E + + G +
Sbjct: 225 VLTKRGFEVHLG-------------TTLKSCEDCHV-------------------VLGDD 252
Query: 332 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 391
++ F+AD ++WT G KP P DLPLN RG+ TL V G P +F+ GD+
Sbjct: 253 TE-FDADTIVWTAGVKP------SPMLADTDLPLNPRGRVCCATTLEVDGAPGVFSAGDA 305
Query: 392 SALRDSS----GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 447
+A+ D + G +AQ A +QA N+ A + PL +R G + LG
Sbjct: 306 AAVPDVTSKEPGAVCAPSAQHASRQAVVLAKNIVATLRGGPLEGYRHSYAGSVASLGLYQ 365
Query: 448 AAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+ GV L G + + +L+ +PT + ++ WL
Sbjct: 366 GVAQ---IYGVKLRGWPAWALHRAYHLMTMPTAHRKTRIAADWL 406
>gi|323359448|ref|YP_004225844.1| NADH dehydrogenase, FAD-containing subunit [Microbacterium
testaceum StLB037]
gi|323275819|dbj|BAJ75964.1| NADH dehydrogenase, FAD-containing subunit [Microbacterium
testaceum StLB037]
Length = 465
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 111/450 (24%), Positives = 182/450 (40%), Gaps = 79/450 (17%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGG+ G YTA +LE L+ + + +V +VD ++P L E+ +GE++
Sbjct: 6 PRILIVGGGYAGFYTAWKLEKLLGRGEA--EVTIVDPLPYMTYQPFLPEVAAGEIE---- 59
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
PR + G++ R ++ G+N ++ + EYD +V++
Sbjct: 60 -PRHVVV----GLRRHLKRTTVIA-GKITGINHATKTATITPIVGDETWQHEYDQIVVTA 113
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
GA + +PG AE A T+E+A + +L+ NF++ ++ P
Sbjct: 114 GAVSRTFPIPGIAENAIGLKTIEEAVAIRDRLTS----NFDK-------------ASVLP 156
Query: 260 TGTPGNRE----------AALKV---LSARKVQLVLGY--------FVRCIRRVGEFEAS 298
G +R A ++V L A L+ Y I +G
Sbjct: 157 AGPERDRLLTVVVVGGGFAGIEVFAELRAYASSLLKSYPQLSFDDTHFHLIEAMGRIMPE 216
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE--------ADLVLWTVGSKPLL 350
V Q S + A K + + L +KG + E +DL++WT G
Sbjct: 217 VSQKTSEWVLKDLAKKGA---FVHLDTQVKGAVDGVIELSTGEQLPSDLIIWTAGVM--- 270
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI----FALGDSSALRDSSGRPLPA-- 404
P R DLP+ RG+ T L V + +A GD SA+ D SG +
Sbjct: 271 --ANPTVVRGSDLPVEERGRIRTRPDLRVGTDEEVVEGAWAAGDVSAVPDLSGGGVGGFC 328
Query: 405 --TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG-VTLD 461
AQ A +Q N+ A + + +NLG + LG + A F G + L
Sbjct: 329 VPNAQHAVRQGKLMAKNIVAVLRGEQPKQYFHKNLGAVAGLGLYNGA----FQSGKIALT 384
Query: 462 GPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
G I A + + + +PT E + +V W+
Sbjct: 385 GFIAWLAHRGYHGLAMPTWERKFRVVGDWV 414
>gi|359464044|ref|ZP_09252607.1| pyridine nucleotide-disulfide oxidoreductase [Acaryochloris sp.
CCMEE 5410]
Length = 424
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 104/431 (24%), Positives = 167/431 (38%), Gaps = 59/431 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD-AWE 138
P I I+G GFGGL TA L +V L+D++ F P+LY++ + ++ W
Sbjct: 7 PLIVIIGAGFGGLQTATSL------GGAAARVTLIDRNNYHTFVPLLYQVATATLEPEWI 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
P L VQF + V+ A + ++++YD+LVL+
Sbjct: 61 ALPIHKLLRRYKNVQFVQGNVE--------------AVDLTAQRVQTEQVMLQYDYLVLA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL-----------ERRNFERLEEKG- 246
G++ L VPGA E A P TLEDA + L + ERR + G
Sbjct: 107 TGSQTHLQGVPGAKEHALPLRTLEDAIALKHHLLQCIEQAAQTKNPDERRQLLTIAIVGG 166
Query: 247 ---IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPE 303
V+ +C P + L VQL+L + EF S++
Sbjct: 167 GATGVEMAGALVELCHQSWPKD----YPWLQDDPVQLIL--VQSGSELLPEFPHSLRTYT 220
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGLESQI-FEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + + + + + + L+S +WT G K P E
Sbjct: 221 YKKLAILGVNIQVETKVASVHASHLELDSGTRIPCATTIWTAGVKAAHPPTEA------A 274
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
LP R + +L ++ +P ++ALGD++ + D + L A A QQ NL
Sbjct: 275 LPQGHRDKIPVLSSLQLQQYPEVYALGDAAQVPDQA---LAGVAPEALQQGVCTARNLRR 331
Query: 423 AINDRPLLPFRFQNLGEMMILG--RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 480
+ PFR+ N G + I+G + P L G +G + + P
Sbjct: 332 QLKGLTPQPFRYFNKGRLAIIGCFSGVGKIGP-----FPLRGFLGWFLWLAVHWVYSPGY 386
Query: 481 EHRLKVGVSWL 491
+RL + V+WL
Sbjct: 387 RNRLMILVTWL 397
>gi|448747726|ref|ZP_21729381.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Halomonas titanicae BH1]
gi|445564669|gb|ELY20786.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Halomonas titanicae BH1]
Length = 432
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 95/407 (23%), Positives = 162/407 (39%), Gaps = 41/407 (10%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ +++L+D++ V+KP+L+EL +G +++ + DL ++ F++ + L
Sbjct: 30 KRAEIVLLDRNTTHVWKPLLHELATGVLNS---SMDEVDLRGHSSAHFYRYQRGSLT--- 83
Query: 167 HLGVNGPMACTHGGTVLLESGLIV------EYDWLVLSLGAEPKLDVVPGAAEFAFPFST 220
G+N + E G V YD+LV+++G+ PG E +
Sbjct: 84 --GINREQQTLQLAPIHDEDGQEVLPARELAYDYLVMAIGSVSNDFGTPGVTEHCHFIDS 141
Query: 221 LEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAA----------- 269
E A R + F R + + Q + I G G AA
Sbjct: 142 PEQAKAFQRDMIN----TFLRYTDPNLRQHTQLTIGIVGGGATGVELAAELFDASRMLNA 197
Query: 270 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA--I 327
V S Q+ + R + V Q + ++ ++D + E Q I
Sbjct: 198 YGVTSVDHQQISVHLLEAAPRLLPGLSERVSQTVKTELESMGVTVHTDTAVKEAQAHQLI 257
Query: 328 KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFA 387
G + ++ + D+ +W G K PP L N + Q E TL +IFA
Sbjct: 258 TG-DDEVIKTDINVWAAGIKA------PPFLAELGLTTNKKNQIEVKSTLQSVDDEKIFA 310
Query: 388 LGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 447
LGD ++ +P AQ A QQA NL + +PL FR+++ G ++ L R D
Sbjct: 311 LGDCASCPMGESGTVPPRAQAAHQQAKLLAKNLVNKLEGKPLADFRYRDHGSLVSLARYD 370
Query: 448 AA---VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
A + S G+ L+G + A Y + + K G++WL
Sbjct: 371 AVGNLMRSSASRGLFLEGWLARQAYASLYRMHQLSIHGAPKTGLAWL 417
>gi|390167435|ref|ZP_10219425.1| NADH dehydrogenase FAD-containing subunit [Sphingobium indicum
B90A]
gi|390168565|ref|ZP_10220523.1| NADH dehydrogenase FAD-containing subunit [Sphingobium indicum
B90A]
gi|389588807|gb|EIM66844.1| NADH dehydrogenase FAD-containing subunit [Sphingobium indicum
B90A]
gi|389589985|gb|EIM67991.1| NADH dehydrogenase FAD-containing subunit [Sphingobium indicum
B90A]
Length = 442
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 111/436 (25%), Positives = 172/436 (39%), Gaps = 57/436 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ P I ILGGGF GL A L K +V ++D++ +F P+LY++ + +
Sbjct: 5 RPPHIIILGGGFAGLACAREL------GGKPIRVTIIDRNNYHLFVPLLYQVATAALSPA 58
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+IA +L D ++++ + +GV+ + L G + +D LV+
Sbjct: 59 DIAQPIRRILRR------HDNIEVVL-GEAVGVD-----PQSRRLSLADGSSLHFDRLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+ G+ P A ++EDA R L R+FE E + TI
Sbjct: 107 ATGSRYNYFAHPEWEPLAPGLRSIEDA----RLLRSRILRSFELAERQPDPHRRAELMTI 162
Query: 258 CPTGT-PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIPN-- 309
G P E A + +L R R + + E+G + P+
Sbjct: 163 VIVGAGPTGVEMAGAI-----AELAHYTLARDFRHIDPGAVRILLVEAGKQILASFPDRL 217
Query: 310 -IAADKNSDKYILELQPAIKGLE----------SQIFEADLVLWTVGSKPLLPHVEPPNN 358
A + + +E+ K LE Q A ++W G K P
Sbjct: 218 STYARRRLEAMGVEIMLG-KSLEDIDGDTLVIGGQRLRAGTIIWAAGIK------ASPAA 270
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
+ G+ V HP I LGDS+A+ D +G+PLPA AQVA QQ + G
Sbjct: 271 FWLQAECDRSGRVRVAADFSVPSHPHIHVLGDSAAMNDEAGQPLPALAQVAQQQGRYLGQ 330
Query: 419 NLWAAINDR-PLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
+L R PL PFRF++ G I+GRN A L G + + ++ L
Sbjct: 331 SLSREFTGRAPLPPFRFRDRGNTAIIGRNAAIFD---FGKRRLKGRLAWLLWAIVHVYLL 387
Query: 478 PTDEHRLKVGVSWLTK 493
E RL V + WL +
Sbjct: 388 VGFEKRLLVSIQWLWR 403
>gi|117929109|ref|YP_873660.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Acidothermus cellulolyticus 11B]
gi|117649572|gb|ABK53674.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Acidothermus cellulolyticus 11B]
Length = 440
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 109/445 (24%), Positives = 188/445 (42%), Gaps = 78/445 (17%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGG+ G Y ALRLE + + V L+D ++P L E +G ++ +
Sbjct: 4 PRIVIVGGGYVGTYAALRLERALRPGEA--NVTLIDPQSYMTYQPFLPEAAAGNLEPRHV 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L T + RV + ++ P H G +EYD LV+S+
Sbjct: 62 VVPLRRVLRRT--RILNGRVTAVQHANRRLTFAP----HVG-----PAAELEYDILVMSV 110
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------------SELERRNFERLEEKG- 246
G+ + +PG AE F T+ +A + + + L RR + G
Sbjct: 111 GSIARTLPIPGLAEVGIGFKTVGEAIFLRNHVLAQLDIAASTDDAALRRRALTFVFVGGG 170
Query: 247 ------IVQAINVETTIC---PTGTPGNR-----EAALKVLSARKVQLVLG-YFVRCIRR 291
+ + ++ C P +P + EA ++L +V LG Y + +RR
Sbjct: 171 YAGVEALAELEDMARDACRSYPNVSPADMRWILVEATDRILP--EVSRELGAYTIAELRR 228
Query: 292 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPL 349
G E ++ A+ D++I+ + + F+AD ++WT G + PL
Sbjct: 229 RG-IEVRLQTRLESAV---------DRHIVLS-------DGEEFDADTLVWTAGVRAHPL 271
Query: 350 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA----T 405
+ H DLP + + + +L V+G +A GD +A+ D + +P PA +
Sbjct: 272 ITHT--------DLPRDEKDRLRATASLRVEGVDDAWAAGDCAAVPDLT-KPQPALCGPS 322
Query: 406 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 465
AQ A +Q G N+ A++ RP+ +R G + LG + + GVT+ G
Sbjct: 323 AQHAVRQGKLLGDNIVASLRGRPVRDYRHAYAGSVASLGLHKGVAQ---IYGVTMRGFPA 379
Query: 466 HSARKLAYLIRLPTDEHRLKVGVSW 490
+ +L R+PT +++V W
Sbjct: 380 WFVHRTYHLSRIPTFNRKVRVVADW 404
>gi|257087253|ref|ZP_05581614.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis D6]
gi|422696409|ref|ZP_16754370.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX4244]
gi|422724094|ref|ZP_16780584.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX2137]
gi|424672521|ref|ZP_18109480.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
599]
gi|256995283|gb|EEU82585.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis D6]
gi|315026057|gb|EFT37989.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX2137]
gi|315146169|gb|EFT90185.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX4244]
gi|402355558|gb|EJU90330.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
599]
Length = 403
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 162/390 (41%), Gaps = 54/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + V+ + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVQTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG E + +PG E A ++ A V + E + R ++ + + ++ + +C
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQE-QMRQYKATQNEEFLKIV-----VC 159
Query: 259 PTGTPGN-----------REAALKVLSARKVQLVLGYFVRCIRR-VGEFEASVKQPESGA 306
G G + A + +SA ++Q+ Y V + R + F +
Sbjct: 160 GAGFTGIELLGSLVENKPKFAEIAGVSADQIQI---YCVEAVTRLLPMFNEKLANYGVQL 216
Query: 307 IPNIAADKNSDKYILELQP-AIKGLESQI-----FEADLVLWTVGSKPLLPHVEPPNNRL 360
+ + A K I E++P A+ +++ A ++WT G HV +
Sbjct: 217 LKDSAIHLLLGKPIKEIKPGAVVYQDNEAGDLAELSAKTIIWTTGVSG--SHV------V 268
Query: 361 HDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGW 418
D A RG+ L H ++ +GD SA+ D+ + RP P TAQ+A + A
Sbjct: 269 GDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKMGAHAAK 328
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
N+ A + PF F++ G + +G A
Sbjct: 329 NIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|418323985|ref|ZP_12935242.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
pettenkoferi VCU012]
gi|365228914|gb|EHM70087.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
pettenkoferi VCU012]
Length = 402
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/397 (23%), Positives = 168/397 (42%), Gaps = 63/397 (15%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + ++D ++ L+++++ L+E +G +
Sbjct: 3 QSRKKVLVLGAGYAGLQTVTKLQKQLSKED--AEITLINKNDYHYEATWLHEASAGTLSY 60
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+ +L V F K VK + N T G + +YD LV
Sbjct: 61 EDALYPVESVLDKDKVNFVKAEVK------KIDRNAQKVETDAG--------VFDYDILV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
+ LG E + + G E AF + + ++ R + E + N+ +EK + +
Sbjct: 107 VGLGFESETFGIDGMKEHAFQIENILTSRKLSRHI-EDKFANYASSKEKD-----DKDIA 160
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR-RVGEFEASVKQ-------------- 301
I G L L+ R +L Y V R + EA+ K
Sbjct: 161 ILVGGAGFTGIEFLGELTERIPELCNKYGVEQSRVHITCVEAAPKMLPQFSDELVNHAVS 220
Query: 302 --PESG-----AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
+ G A P +AA N +++E + G + Q+ EA+ V+W G +
Sbjct: 221 FLEDKGVEFKIATPIVAA--NEKGFVVE----VDGKKEQL-EANTVVWAAGVR------- 266
Query: 355 PPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQ 411
N + D RG+ ++ L +KGH IF +GD SA + + RPLP TAQ+A Q
Sbjct: 267 --GNHIMDDAFEGVKRGRIVNNQDLTIKGHDEIFVIGDCSAFIPEGEERPLPTTAQIAMQ 324
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
Q + +++ ++ P +PF + + G + LG +D
Sbjct: 325 QGENVAQSIYNILHGEPTVPFNYVDRGTVCSLGSHDG 361
>gi|422302541|ref|ZP_16389903.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9806]
gi|389788274|emb|CCI16254.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9806]
Length = 459
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 180/446 (40%), Gaps = 74/446 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE-- 254
++ G +A T+EDA + R++ FE+ E++ I+ E
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRI----YLAFEKAEKE-----IDAEKR 155
Query: 255 ----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG----- 305
T + G P E L+ ++ G ++ EA + E
Sbjct: 156 QALLTFVIVGGGPTGVE-----LAGAIAEIAHGALRSDFHQINPTEAKILLLEGMDRVLP 210
Query: 306 -AIPNIAADKNSDKYILELQPAIKGLESQIFE---------------ADLVLWTVGSKP- 348
P+++A + L + + + I E A+ +LW G K
Sbjct: 211 PYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVSVRQGEKTTEIAAETILWAAGVKAS 270
Query: 349 ----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
+L N L+ G+ + L + G+ IF +GD + +PLP
Sbjct: 271 RMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYANIFVIGDLANFAHQGDKPLPG 323
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 464
A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+ G I
Sbjct: 324 IAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK---FSGFI 380
Query: 465 GHSARKLAYLIRLPTDEHRLKVGVSW 490
A++ L +++L V V W
Sbjct: 381 AWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|115358883|ref|YP_776021.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia ambifaria AMMD]
gi|115284171|gb|ABI89687.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia ambifaria AMMD]
Length = 433
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 157/390 (40%), Gaps = 42/390 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D
Sbjct: 6 RPARIVIVGGGIAGLQLATRLGERLGRSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQ 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ F + G + +K L + + G LL +EYD L+L
Sbjct: 65 QQQVIFLAHARDHGYTYQPGELKGLDRARRRVQLAEIRSPEG--ELLVDARELEYDVLIL 122
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+LG++ VPG E + + + A + L R+ R E I
Sbjct: 123 ALGSQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEP--------FRVAI 174
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI--PNIAADKN 315
G G L +R +++ Y +R + P A P I+A
Sbjct: 175 VGAGATG---VELAAELSRLLEIAQAYGDETVRERLQLTLLESGPRILAAFPPRISA--- 228
Query: 316 SDKYILELQPAIKGLES----------------QIFEADLVLWTVGSKPLLPHVEPPNNR 359
S + LE Q I L S EADL++W G K
Sbjct: 229 SAQRRLE-QIGIHVLTSTRVTSADANGFHYGDGSFAEADLMVWAAGVK-----ASDFMQA 282
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGW 418
L L N Q TL +FA+GD ++L+ D RPLP TAQVA QQA+
Sbjct: 283 LGGLDTNRANQIMVGPTLQATADEHVFAIGDCASLQPDGHERPLPPTAQVATQQAEHLAK 342
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+L A ++ +PL PF F + G ++ + DA
Sbjct: 343 HLPAWLDGKPLPPFAFHDFGALVSISDYDA 372
>gi|408529793|emb|CCK27967.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces davawensis JCM 4913]
Length = 392
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 154/379 (40%), Gaps = 61/379 (16%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LG G+ G++TA+RL + + + LV+ + RFV + ++++ +G+
Sbjct: 7 IVVLGAGYTGMFTAVRLAHRTRKTGVR--ITLVNPTGRFVERLRMHQVAAGQTLTEH--- 61
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
R +L TGV+F + + P TV ++ + + YD LV +LG+
Sbjct: 62 RIPGMLEGTGVRFVEGAATAIDPEAR-------------TVTIDGKMSLGYDTLVYALGS 108
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
VPG AF +++E A R +L+E+ G + + T I +
Sbjct: 109 ATDTGKVPGVDAHAFTLNSIEIAGRFAERLTEVAEAGGTVTVCGGGLTGVEAATEIAES- 167
Query: 262 TPG--------NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 313
PG + + AR GY R + R+G + ESGA
Sbjct: 168 HPGLHVTLISQDEPGGMMGDKAR------GYLHRALDRLG------IKVESGA------- 208
Query: 314 KNSDKYILELQPAIKGLESQIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQA 371
+ L ++ + + + LWT G K PL + + RG
Sbjct: 209 ----RVAKVLPEGVELADGGVIASAACLWTAGVKVSPLAAEA--------GIATDERGLI 256
Query: 372 ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 431
D +L HP I A+GD++A+R + G+ + T Q A + + + + + P
Sbjct: 257 VVDVSLRSVSHPEIHAVGDAAAIRLAWGQ-IHGTCQSGLPTAQYTADTIARLVRGKTVKP 315
Query: 432 FRFQNLGEMMILGRNDAAV 450
FRF + + LGR DA +
Sbjct: 316 FRFGYFHQPVSLGRRDAVI 334
>gi|306845837|ref|ZP_07478405.1| NADH dehydrogenase [Brucella inopinata BO1]
gi|306273729|gb|EFM55567.1| NADH dehydrogenase [Brucella inopinata BO1]
Length = 424
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 118/431 (27%), Positives = 183/431 (42%), Gaps = 55/431 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ++G GFGGL L D K ++ L+DQ +F+P+LY++ + + EI
Sbjct: 7 PHIVVVGAGFGGLQLIRDL------DGAKVRITLIDQRNHHLFQPLLYQVATTILSTSEI 60
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLG--VNGPMACTHGGTVLLESGLIVEYDWLVL 197
A +L F+DR ++ + LG ++ MA +VLLE+G V YD LVL
Sbjct: 61 AWPIRNL--------FRDRAEV---TTLLGTVIDVDMARK---SVLLENGDEVSYDMLVL 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+ GA + A LEDA + R+L L ER + QA+ + +I
Sbjct: 107 ATGARHAYFGNDQWEKLAPGLKALEDATTIRRRLL-LAFERAEREPDMARRQAL-LTFSI 164
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP---N 309
G G A + AR+ R + +A V E+G A P +
Sbjct: 165 VGGGPTGVELAGIIAELARRT------LWPEFRNIDTRQARVLLLEAGPRILSAFPEDLS 218
Query: 310 IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE----PPNNRLHDLPL 365
A K +K +E++ G+ + + V TVG + + H L L
Sbjct: 219 AYARKALEKLGVEVR---LGIPVKDITQEGV--TVGDEFIPCHTTVWAAGVAASPAALWL 273
Query: 366 NAR----GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 421
+A G+ + L V GH IFA+GD++ + G P+P A A QQ + +
Sbjct: 274 DAESDRAGRVKVLSNLSVPGHEDIFAIGDTAWVEGDDGHPVPGIAPAAKQQGAYVAKVIR 333
Query: 422 AAI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 480
+ + N P LPFR+++ G + +GR A V + L G I +A++ L
Sbjct: 334 SRVENKTPPLPFRYKHQGNLATIGRGAAVVDMGRIR---LKGTIAWWFWGIAHIFFLIGT 390
Query: 481 EHRLKVGVSWL 491
R V SWL
Sbjct: 391 RSRAAVAWSWL 401
>gi|300777989|ref|ZP_07087847.1| NADH dehydrogenase [Chryseobacterium gleum ATCC 35910]
gi|300503499|gb|EFK34639.1| NADH dehydrogenase [Chryseobacterium gleum ATCC 35910]
Length = 423
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 107/441 (24%), Positives = 185/441 (41%), Gaps = 71/441 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K I I+GGGF G+ ++SL ++DK+ ++ LVD++ F P++Y++ + ++A
Sbjct: 2 KKHILIVGGGFAGINL---IKSL--KNDKRFKITLVDKNNYHFFPPLIYQVATSFIEASN 56
Query: 139 IAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I+ F L +N V+F + + P + T+ ++G + YD+LVL
Sbjct: 57 ISYPFRKLFSNNRNVKFHMGSLIRVNPENK-------------TIDTDTGTL-GYDYLVL 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETT 256
+LG E + + A P +E+A + + L LE E K I QA ++
Sbjct: 103 ALGTESNFFGMENVKKCALPMKNIEEALYLRNHILLTLE----EAARNKDIKQAEKLQNI 158
Query: 257 ICPTGTPGN-----------REAALKVLSARKVQLVLGYFVRCI-------RRVGEFEAS 298
+ G P R A K K+ L Y + + ++ + A
Sbjct: 159 VIAGGGPTGVELAGMLAEMGRYIAQKEYPEIKLGLSNLYLIDALPTLLSPMSKLAQKTAY 218
Query: 299 VKQPESGA--IPNIAA-DKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
K E G + N++ D +K IL + I E + ++WT G + E
Sbjct: 219 EKLKELGVKIVLNVSVKDYTDNKVILS--------DGNIIETETLIWTSG----VIGKEV 266
Query: 356 PNNRLHDLPLNARGQAE---TDETLCVKGHPRIFALGDSSALRDSSGRP--LPATAQVAF 410
P LP N+ G+ D V+G I+ALGD + + P P AQVA
Sbjct: 267 PG-----LPENSIGKGRRILVDAYNKVEGTNTIYALGDIALMLSEEKYPKGHPQLAQVAI 321
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
QQ N + + L PF + + G M I+ + +A V + + +G I
Sbjct: 322 QQGKNLAANFKRIEDGKVLEPFHYNDKGSMAIISKYNAVVD---LPKHSFNGFIAWLTWL 378
Query: 471 LAYLIRLPTDEHRLKVGVSWL 491
++I L ++++++ V W
Sbjct: 379 FIHIIPLVGFKNKIQLAVDWF 399
>gi|425449870|ref|ZP_18829703.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
7941]
gi|389769580|emb|CCI05638.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
7941]
Length = 459
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 180/446 (40%), Gaps = 74/446 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE-- 254
++ G +A T+EDA + R++ FE+ E++ I+ E
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRI----YLAFEKAEKE-----IDAEKR 155
Query: 255 ----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA---- 306
T + G P E L+ ++ G ++ EA + E
Sbjct: 156 QALLTFVIVGGGPTGVE-----LAGAIAEIAHGALRSDFHQINPTEAKILLLEGMERVLP 210
Query: 307 --IPNIAADKNSDKYILELQPAIKGLESQIFE---------------ADLVLWTVGSKP- 348
P+++A + L + + + I E A+ +LW G K
Sbjct: 211 PYSPDLSAKAAASLIKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETILWAAGVKAS 270
Query: 349 ----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
+L N L+ G+ + L + G+ IF +GD + +PLP
Sbjct: 271 RMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYGNIFVIGDLANFAHQGDKPLPG 323
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 464
A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+ G I
Sbjct: 324 IAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK---FSGFI 380
Query: 465 GHSARKLAYLIRLPTDEHRLKVGVSW 490
A++ L +++L V V W
Sbjct: 381 AWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|306840603|ref|ZP_07473357.1| NADH dehydrogenase [Brucella sp. BO2]
gi|306289403|gb|EFM60635.1| NADH dehydrogenase [Brucella sp. BO2]
Length = 441
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 182/429 (42%), Gaps = 51/429 (11%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ++G GFGGL L D K ++ L+DQ +F+P+LY++ + + EI
Sbjct: 24 PHIVVVGAGFGGLQLIRDL------DGAKVRITLIDQRNHHLFQPLLYQVATTILSTSEI 77
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A +L F+DR ++ + LG + T +VLLE+G V YD LVL+
Sbjct: 78 AWPIRNL--------FRDRAEV---TTLLGTVIDVD-TARKSVLLENGDEVSYDMLVLAT 125
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
GA + A LEDA + R+L L ER + QA+ + +I
Sbjct: 126 GARHAYFGNDQWEKLAPGLKALEDATTIRRRLL-LAFERAEREPDMARPQAL-LTFSIVG 183
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP---NIA 311
G G A + AR+ R + +A V E+G A P +
Sbjct: 184 GGPTGVELAGIIAELARRT------LWPEFRNIDTRQARVLLLEAGPRILSAFPEDLSTY 237
Query: 312 ADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE----PPNNRLHDLPLNA 367
A K +K +E++ G+ + + V TVG + + H L L+A
Sbjct: 238 ARKALEKLGVEVR---LGIPVKDITQEGV--TVGDEFIPCHTTVWAAGVAASPAALWLDA 292
Query: 368 R----GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
G+ + L V GH IFA+GD++ + GRP+P A A QQ + + +
Sbjct: 293 ESDRAGRVKVLSNLSVPGHEDIFAIGDTAWVEGDDGRPVPGIAPAAKQQGAYVAKVIRSR 352
Query: 424 I-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 482
+ N P LPFR+++ G + +G+ A V + L G I +A++ L
Sbjct: 353 VENKTPPLPFRYRHQGNLATIGKGAAVVDMGRIR---LKGTIAWWFWGIAHIFFLIGTRS 409
Query: 483 RLKVGVSWL 491
R V SWL
Sbjct: 410 RAAVAWSWL 418
>gi|423613086|ref|ZP_17588946.1| hypothetical protein IIM_03800 [Bacillus cereus VD107]
gi|401242648|gb|EJR49021.1| hypothetical protein IIM_03800 [Bacillus cereus VD107]
Length = 402
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/411 (22%), Positives = 165/411 (40%), Gaps = 94/411 (22%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + + ++ LV+ + L+E +G +
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKTLSVSE--AEITLVNNNSYHYQATWLHESAAGTLQDD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L++G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILQNGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE------LERRN-----------FE 240
LG E + + G E AF + + ++ + E E+R+ F
Sbjct: 106 GLGFESETFGIKGLKEHAFSITNINATRQIREHMEEKFAQYATEKRDELITIVVGGAGFT 165
Query: 241 RLE--------------------EKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 280
+E EK + + T P P E A+K L + V+
Sbjct: 166 GIEYVGELANRIPELCKKYDIPREKARIICVEAAPTALPGFDPELVEYAVKQLEKKGVEF 225
Query: 281 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 340
+G ++ EA+ E G I G +S++ +++ V
Sbjct: 226 RIGTAIK--------EAT----EEGII------------------VANGDDSELLKSETV 255
Query: 341 LWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDSS 398
+W G + N + + A RG+ + DE + GH +F +GD++ + +
Sbjct: 256 VWAAGVRG--------NGIVEESGFEAMRGRIKVDEFMHAPGHEDVFMVGDAALIINEEI 307
Query: 399 GRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 448
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 308 NRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFAFDNKGSVCSLGHDDA 358
>gi|196250899|ref|ZP_03149584.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Geobacillus sp. G11MC16]
gi|196209628|gb|EDY04402.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Geobacillus sp. G11MC16]
Length = 407
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 162/389 (41%), Gaps = 48/389 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KP + ILG G+GGL T +RL+ L+ ++ + LV++ + L+E +G +
Sbjct: 5 RKPNVVILGAGYGGLMTTVRLQKLIGVNE--ANITLVNKHDYHYETTWLHEASAGTLHHD 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ AD++ V+F KD V + P++ VLLE+G + EYD+LV+
Sbjct: 63 RVRYPIADVIDRNKVKFIKDTVTKIAPNEK-------------KVLLENGEL-EYDYLVI 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+LG E + + G E+AF + + +A R R+ E + + EEK + TI
Sbjct: 109 ALGFESETFGIKGLKEYAFSIANV-NAARQIREHIEYQFATYNVEEEKK-----DERLTI 162
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVR-------CIRRVGE----FEASVKQPESGA 306
G L L R +L Y + C+ F+ + +
Sbjct: 163 VVGGAGFTGIEFLGELVNRIPELCREYDIDPNKVRIICVEAAPTALPGFDPELVEYAVSQ 222
Query: 307 IPNIAADKNSDKYILELQP----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + I E P KG E + +A V+W G + ++ L
Sbjct: 223 LERKGVEFKIGTAIKECTPDGIIVAKGDEVEEIKAGTVVWAAGVR--------GSSVLEQ 274
Query: 363 LPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQADFAGWNL 420
R + + D L G+ IF +GD + + + + RP P TAQ+A Q+ NL
Sbjct: 275 SGFETMRSRIKVDPFLRAPGYEDIFVVGDCALIINEETNRPYPPTAQIAMQEGQLCAKNL 334
Query: 421 WAAINDR-PLLPFRFQNLGEMMILGRNDA 448
I + L F+ G + LG +DA
Sbjct: 335 AVLIRGQGELESFKPDIKGTVCSLGHDDA 363
>gi|159029119|emb|CAO90108.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 459
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 180/446 (40%), Gaps = 74/446 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE-- 254
++ G +A T+EDA + R++ FE+ E++ I+ E
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRI----YLAFEKAEKE-----IDAEKR 155
Query: 255 ----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA---- 306
T + G P E L+ ++ G ++ EA + E
Sbjct: 156 QALLTFVIVGGGPTGVE-----LAGAIAEIAHGALRSDFHQINPTEAKILLLEGMERVLP 210
Query: 307 --IPNIAADKNSDKYILELQPAIKGLESQIFE---------------ADLVLWTVGSKP- 348
P+++A + L + + + I E A+ +LW G K
Sbjct: 211 PYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETILWAAGVKAS 270
Query: 349 ----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
+L N L+ G+ + L + G+ IF +GD + +PLP
Sbjct: 271 RMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYGNIFVIGDLANFAHQGDKPLPG 323
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 464
A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+ G I
Sbjct: 324 IAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK---FSGFI 380
Query: 465 GHSARKLAYLIRLPTDEHRLKVGVSW 490
A++ L +++L V V W
Sbjct: 381 AWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|172063618|ref|YP_001811269.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia ambifaria MC40-6]
gi|171996135|gb|ACB67053.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria MC40-6]
Length = 433
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 159/393 (40%), Gaps = 48/393 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D
Sbjct: 6 RPARIVIVGGGIAGLQLATRLGERLGRSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDLQ 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ F + G + +K L + V + G +L+++ + EYD L+L
Sbjct: 65 QQQVIFLAHARDHGYTYQPGELKGLDRARRR-VQLREIRSPDGELLIDAREL-EYDVLIL 122
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+LG++ VPG E + + + A + L R+ R E I
Sbjct: 123 ALGSQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEP--------FRVAI 174
Query: 258 CPTGTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPESGAI 307
G G AA L++ A + +L L R + F + +
Sbjct: 175 VGAGATGVELAAELSRLLEIAQAYGDETVRERLQLTLLESGPRILAAFPPRISASAQRRL 234
Query: 308 PNI-----------AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
I AAD N Y + EADL++W G K
Sbjct: 235 EQIGIHVLTSTRVTAADANGFHYG----------DGSFAEADLMVWAAGVK-----ASDF 279
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADF 415
L L N Q TL +FA+GD ++L+ D RPLP TAQVA QQA+
Sbjct: 280 MQALGGLDTNRANQIMVGPTLQATADEHVFAIGDCASLQPDGQQRPLPPTAQVATQQAEH 339
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+L A ++ +PL PF F + G ++ + DA
Sbjct: 340 LAKHLPAWLDGKPLPPFAFHDFGALVSISDYDA 372
>gi|390441973|ref|ZP_10229996.1| Type 2 NADH dehydrogenase [Microcystis sp. T1-4]
gi|389834729|emb|CCI34122.1| Type 2 NADH dehydrogenase [Microcystis sp. T1-4]
Length = 458
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 102/446 (22%), Positives = 180/446 (40%), Gaps = 74/446 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ ++GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVVIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE-- 254
++ G +A T+EDA + R++ FE+ E++ I+ E
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRI----YLAFEKAEKE-----IDAEKR 155
Query: 255 ----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG----- 305
T + G P E L+ ++ G ++ EA + E
Sbjct: 156 QALLTFVIVGGGPTGVE-----LAGAIAEIAHGALRSDFHQINPTEAKILLLEGMDRVLP 210
Query: 306 -AIPNIAADKNSDKYILELQPAIKGLESQIFE---------------ADLVLWTVGSKP- 348
P+++A + L + + + I E A+ +LW G K
Sbjct: 211 PYSPDLSAKAAASLIKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETILWAAGVKAS 270
Query: 349 ----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
+L N L+ G+ + L + G+ IF +GD + +PLP
Sbjct: 271 RMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYANIFVIGDLANFAHQGDKPLPG 323
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 464
A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+ G I
Sbjct: 324 IAPVAMQEGEYLANLLISRLKGQTIQPFHYIDRGSLAVIGQNAAVVDLGFVK---FSGFI 380
Query: 465 GHSARKLAYLIRLPTDEHRLKVGVSW 490
A++ L +++L V V W
Sbjct: 381 AWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|226314341|ref|YP_002774237.1| NADH dehydrogenase [Brevibacillus brevis NBRC 100599]
gi|226097291|dbj|BAH45733.1| putative NADH dehydrogenase [Brevibacillus brevis NBRC 100599]
Length = 396
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 153/380 (40%), Gaps = 69/380 (18%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I ILG G+GGL T L+L+ + ++ ++ LV++ L+E +G A
Sbjct: 4 PKILILGAGYGGLLTTLQLQKKLNYNE--AEITLVNKHNYHYITTWLHEPAAGTAPADHA 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L V F K V+ + + TV L++G ++ YD+LV+ L
Sbjct: 62 RVSLDGILNKDKVNFVKGTVQAIQSEEQ-------------TVTLDNGEVLPYDYLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF----ERLEEKGIVQAINVET 255
G+EP+ + G E AF ++ +A R R+ E F +R++ V T
Sbjct: 109 GSEPETFGIEGLKEHAFSIRSI-NAVRNIREHIEYMFSKFKNEPDRMDYLTFVVGGAGFT 167
Query: 256 TICPTGTPGNR--------------------EAALKVLSARKVQLVLGYFVRCIRRVGEF 295
I G G+R EAA L +L+ Y + + R G
Sbjct: 168 GIEFCGELGDRLPELCREFDVDPELVKVYCIEAAPTALPGFDPELIQ-YAINVLERKG-I 225
Query: 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
+ P P D +L IK + V+W G +
Sbjct: 226 VFKIGTPIKQCTP--------DGVLLNTGEEIK--------SKTVIWAAGVR-------- 261
Query: 356 PNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
N+ + RG+ + DE L GH +F +GD + + + GRP P TAQ+A Q+ +
Sbjct: 262 GNSIVEKAGFEVMRGRVKVDEYLRAPGHENVFVVGDCALIFNEEGRPYPPTAQIAVQEGE 321
Query: 415 FAGWNLWAAINDRPLLPFRF 434
G NL A I R LP +F
Sbjct: 322 TLGENLAALI--RGDLPQKF 339
>gi|119356894|ref|YP_911538.1| NADH dehydrogenase [Chlorobium phaeobacteroides DSM 266]
gi|119354243|gb|ABL65114.1| NADH dehydrogenase [Chlorobium phaeobacteroides DSM 266]
Length = 444
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 100/425 (23%), Positives = 170/425 (40%), Gaps = 48/425 (11%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+GGGF GL A L + K +V L+D++ +F+P+LY++ ++A EIA
Sbjct: 3 HVVIVGGGFAGLNVAKEL-----GNKKDIRVTLIDKNNFQLFQPLLYQVAMAALNAGEIA 57
Query: 141 PRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L+ V K VK + P + TV + G + +YD LVL
Sbjct: 58 YPLRIMLSKYKNVTVLKGVVKTVDPRNK-------------TVYTDFGEM-QYDSLVLCC 103
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
GA+ EFA T+ A + R++ E N ER ++ + + + T +
Sbjct: 104 GAKHHYFGHNEWEEFAPGLKTIGQASEIRRRVME-AFENAERSQD--VAEKRKLLTFVIV 160
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCI--------------RRVGEFEASVKQPESG 305
G P E A + + L + R I R + F + +
Sbjct: 161 GGGPTGVELAGSI--GEMSRYYLSKYYRNIDPKLTRIFIVHSAPRILQTFSPELSSKATR 218
Query: 306 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
A+ + + + + + ++ EA VLW G + +
Sbjct: 219 ALEKLGVQVWTCSLVSRIDADGVQVGNEKIEAGTVLWAAGVRA------TSIGKTIGFDT 272
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425
+ G+ ++ L V+G+P +F GD + LP A VA QQ G N+ A
Sbjct: 273 DHSGRIIVEDDLTVRGYPDVFTGGDQAHFALPGETSLPGLASVALQQGQAIGRNILLAFQ 332
Query: 426 DRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLK 485
+P PF++++ G+M +G+N A V+ L I + YL + +HRL
Sbjct: 333 GKPKKPFKYRDKGQMATIGKNAAIAERGNVKLSGLSAWIIWLGVHIYYLSGV---KHRLF 389
Query: 486 VGVSW 490
V + W
Sbjct: 390 VILQW 394
>gi|422721714|ref|ZP_16778297.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0017]
gi|315031038|gb|EFT42970.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus faecalis
TX0017]
Length = 403
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 161/390 (41%), Gaps = 54/390 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQAINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG E + +PG E A ++ A V + E + R ++ + + ++ + +C
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQE-QMRQYKATQNEEFLKIV-----VC 159
Query: 259 PTGTPGN-----------REAALKVLSARKVQLVLGYFVRCIRR-VGEFEASVKQPESGA 306
G G + A + +S ++Q+ Y V + R + F +
Sbjct: 160 GAGFTGIELLGSLVENKPKFAEIAGVSTDQIQI---YCVEAVTRLLPMFNEKLANYGVQL 216
Query: 307 IPNIAADKNSDKYILELQP-AIKGLESQI-----FEADLVLWTVGSKPLLPHVEPPNNRL 360
+ + A K I E++P A+ +++ A ++WT G HV +
Sbjct: 217 LKDSAIHLLLGKPIKEIKPGAVVYQDNEAGDLAELSAKTIIWTTGVSG--SHV------V 268
Query: 361 HDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGW 418
D A RG+ L H ++ +GD SA+ D+ + RP P TAQ+A + A
Sbjct: 269 GDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKMGAHAAK 328
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
N+ A + PF F++ G + +G A
Sbjct: 329 NIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|443648227|ref|ZP_21129929.1| FAD dependent oxidoreductase family protein [Microcystis aeruginosa
DIANCHI905]
gi|443335274|gb|ELS49750.1| FAD dependent oxidoreductase family protein [Microcystis aeruginosa
DIANCHI905]
Length = 459
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 180/446 (40%), Gaps = 74/446 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE-- 254
++ G +A T+EDA + R++ FE+ E++ I+ E
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRI----YLAFEKAEKE-----IDAEKR 155
Query: 255 ----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA---- 306
T + G P E L+ ++ G ++ EA + E
Sbjct: 156 QALLTFVIVGGGPTGVE-----LAGAIAEIAHGALRSDFHQINPTEAKILLLEGMERVLP 210
Query: 307 --IPNIAADKNSDKYILELQPAIKGLESQIFE---------------ADLVLWTVGSKP- 348
P+++A + L + + + I E A+ +LW G K
Sbjct: 211 PYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETILWAAGVKAS 270
Query: 349 ----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
+L N L+ G+ + L + G+ IF +GD + +PLP
Sbjct: 271 RMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYGNIFVIGDLANFAHQGDKPLPG 323
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 464
A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+ G I
Sbjct: 324 IAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK---FSGFI 380
Query: 465 GHSARKLAYLIRLPTDEHRLKVGVSW 490
A++ L +++L V V W
Sbjct: 381 AWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|294853713|ref|ZP_06794385.1| NADH dehydrogenase [Brucella sp. NVSL 07-0026]
gi|294819368|gb|EFG36368.1| NADH dehydrogenase [Brucella sp. NVSL 07-0026]
Length = 424
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 181/429 (42%), Gaps = 51/429 (11%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ++G GFGGL L D K ++ L+DQ +F+P+LY++ + + EI
Sbjct: 7 PHIVVVGAGFGGLQLIRDL------DGAKVRITLIDQRNHHLFQPLLYQVATTILSTSEI 60
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A +L F+DR ++ + LG + T +V LE+G V YD LVL+
Sbjct: 61 AWPIRNL--------FRDRAEV---TTLLGTVIDVD-TARKSVFLENGDEVSYDMLVLAT 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
GA + A LEDA + R+L L ER + QA+ + +I
Sbjct: 109 GARHAYFGNDQWEKLAPGLKALEDATTIRRRLL-LAFERAEREPDMARRQAL-LTFSIVG 166
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP---NIA 311
G G A + AR+ R + ++A V E+G A P +
Sbjct: 167 GGPTGVELAGIIAELARRT------LWPEFRNIDTWQARVLLLEAGPRILSAFPEDLSAY 220
Query: 312 ADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE----PPNNRLHDLPLNA 367
A + +K +E++ I I + + TVG + + H L L+A
Sbjct: 221 ARRALEKLGVEVRLGIP--VKDITQEGV---TVGDEFIPCHTTVWAAGVAASPAALWLDA 275
Query: 368 R----GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
G+ + L V GH IFA+GD++ + GRP+P A A QQ + + +
Sbjct: 276 ESDRAGRVKVLSNLSVPGHEDIFAIGDTAWVEGDDGRPVPGIAPAAKQQGAYVAKVIRSR 335
Query: 424 I-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 482
+ N P LPFR+++ G + +G+ A V + L G I +A++ L
Sbjct: 336 VENKTPPLPFRYKHQGNLATIGKGAAVVDMGRIR---LKGTIAWWFWGIAHIFFLIGTRS 392
Query: 483 RLKVGVSWL 491
R V SWL
Sbjct: 393 RAAVAWSWL 401
>gi|228923663|ref|ZP_04086942.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|423634202|ref|ZP_17609855.1| hypothetical protein IK7_00611 [Bacillus cereus VD156]
gi|228836024|gb|EEM81386.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|401281448|gb|EJR87359.1| hypothetical protein IK7_00611 [Bacillus cereus VD156]
Length = 402
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 173/412 (41%), Gaps = 96/412 (23%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G ++
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLEDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL-------ERRN-----------F 239
LG E + + G E+AF + + +A R R+ E E+R+ F
Sbjct: 106 GLGFESETFGITGLKEYAFSIANI-NATRQIREHMEASFAKYADEKRDELVTIVVGGAGF 164
Query: 240 ERLEEKG--------IVQAINV----ETTIC----PTGTPGNR----EAALKVLSARKVQ 279
+E G + + NV IC PT PG E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 339
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 397
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVR--------GNGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 398 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 448
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 358
>gi|440752144|ref|ZP_20931347.1| FAD dependent oxidoreductase family protein [Microcystis aeruginosa
TAIHU98]
gi|440176637|gb|ELP55910.1| FAD dependent oxidoreductase family protein [Microcystis aeruginosa
TAIHU98]
Length = 459
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 180/446 (40%), Gaps = 74/446 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE-- 254
++ G +A T+EDA + R++ FE+ E++ I+ E
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRI----YLAFEKAEKE-----IDAEKR 155
Query: 255 ----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG----- 305
T + G P E L+ ++ G ++ EA + E
Sbjct: 156 QALLTFVIVGGGPTGVE-----LAGAIAEIAHGALRSDFHQINPTEAKILLLEGMDRVLP 210
Query: 306 -AIPNIAADKNSDKYILELQPAIKGLESQIFE---------------ADLVLWTVGSKP- 348
P+++A + L + + + I E A+ +LW G K
Sbjct: 211 PYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVSVRQGEKTTEIAAETILWAAGVKAS 270
Query: 349 ----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
+L N L+ G+ + L + G+ IF +GD + +PLP
Sbjct: 271 RMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYGNIFVIGDLANFAHQGDKPLPG 323
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 464
A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+ G I
Sbjct: 324 IAPVAMQEGEYLANLLISRLKGQTIQPFHYIDRGSLAVIGQNAAVVDLGFVK---FSGFI 380
Query: 465 GHSARKLAYLIRLPTDEHRLKVGVSW 490
A++ L +++L V V W
Sbjct: 381 AWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|423583122|ref|ZP_17559233.1| hypothetical protein IIA_04637 [Bacillus cereus VD014]
gi|401210031|gb|EJR16786.1| hypothetical protein IIA_04637 [Bacillus cereus VD014]
Length = 402
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 173/412 (41%), Gaps = 96/412 (23%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P+I +LG G+GG+ T +RL+ + ++ ++ LV+ + L+E +G ++
Sbjct: 2 KTPKIVVLGAGYGGMITTVRLQKALSVNE--AEITLVNNNSYHYQATWLHESAAGTLEDE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ V F +D V + ++ ++L+ G + EYD+LV+
Sbjct: 60 KICLDIQDVIDTNKVNFVQDTVVEIKAAEK-------------RIILKDGEL-EYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-------LERRN-----------F 239
LG E + + G E+AF + + +A R R+ E E+R+ F
Sbjct: 106 GLGFESETFGITGLKEYAFSIANI-NATRQIREHMEASFAKYAAEKRDELVTIVVGGAGF 164
Query: 240 ERLEEKG--------IVQAINV----ETTIC----PTGTPGNR----EAALKVLSARKVQ 279
+E G + + NV IC PT PG E A+K L + V+
Sbjct: 165 TGIEYVGELANRVPELCKQYNVPREKARIICVEAAPTALPGFDPALVEYAVKQLEKKGVE 224
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 339
+G ++ EA+ E G I G ++++ +++
Sbjct: 225 FRIGTAIK--------EAT----EEGII------------------VANGDDTELIKSET 254
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDS 397
V+W G + N + + A RG+ + DE + G+ +F +GD++ + +
Sbjct: 255 VVWAAGVR--------GNGIVEESGFEAMRGRVKVDEYMHAPGYEDVFMVGDAALIINEE 306
Query: 398 SGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 448
RP P TAQ+A QQ NL + + + F F N G + LG +DA
Sbjct: 307 INRPYPPTAQIAIQQGYNIAHNLTVLVRGKGEMKKFVFDNKGSVCSLGHDDA 358
>gi|425436250|ref|ZP_18816688.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9432]
gi|389679096|emb|CCH92111.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9432]
Length = 459
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 180/446 (40%), Gaps = 74/446 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE-- 254
++ G +A T+EDA + R++ FE+ E++ I+ E
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRI----YLAFEKAEKE-----IDAEKR 155
Query: 255 ----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA---- 306
T + G P E L+ ++ G ++ EA + E
Sbjct: 156 QALLTFVIVGGGPTGVE-----LAGAIAEIAHGALRSDFHQINPTEAKILLLEGMERVLP 210
Query: 307 --IPNIAADKNSDKYILELQPAIKGLESQIFE---------------ADLVLWTVGSKP- 348
P+++A + L + + + I E A+ +LW G K
Sbjct: 211 PYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETILWAAGVKAS 270
Query: 349 ----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
+L N L+ G+ + L + G+ IF +GD + +PLP
Sbjct: 271 RMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYGNIFVIGDLANFAHQGDKPLPG 323
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 464
A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+ G I
Sbjct: 324 IAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK---FSGFI 380
Query: 465 GHSARKLAYLIRLPTDEHRLKVGVSW 490
A++ L +++L V V W
Sbjct: 381 AWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|251771598|gb|EES52174.1| NADH dehydrogenase [Leptospirillum ferrodiazotrophum]
Length = 452
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 112/436 (25%), Positives = 181/436 (41%), Gaps = 64/436 (14%)
Query: 76 DKKKP-RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
D KP R+ ILG GFGGLYT + L ++ + + +VD+ F+F PML+ + +G +
Sbjct: 7 DGSKPYRVLILGAGFGGLYTGVLLSQILGKRAPNVWITVVDRQNYFLFTPMLHAVATGAL 66
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ +A + T V V+ + + + A + YD
Sbjct: 67 EPRYVAHSIRKIFRKTRVHAHVGEVERIDLENRQVITPHRALS--------------YDE 112
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLE-EKGIVQAINV 253
LV+SLG+E AF +LEDA R++ + R FE+ E+ + +
Sbjct: 113 LVISLGSETNFFGNRDLERRAFTLKSLEDAVRINNHII----RQFEKAYWEEDPERKRAL 168
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR---RVGEFEASVKQPESGAIPNI 310
T + G P E A ++ +L+ + R R RV EA +G I
Sbjct: 169 LTFVVVGGGPTGVELAGEIYEYAVRELLRDFGRRIDRSDIRVILLEA------TGRILPS 222
Query: 311 AADKNSDKYILELQPAIKGLESQI------FEADLV-------------LWTVGSKPLLP 351
D+ S + I L G+E ++ ++ +LV +W G K
Sbjct: 223 LPDRLSTEAIRRLTEI--GIEVRLETRLESWDGELVRFSSGESLAAGTLVWAAGVK---- 276
Query: 352 HVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQV 408
N + +LPL+ +G+ TL K ++ LGD++ D +P P TAQ
Sbjct: 277 ----TNPLVRELPLDKDPQGRIVVRATLEAKSMDHVWVLGDNAHSVDPFEQKPYPPTAQT 332
Query: 409 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 468
A +QA N+ A I RP F ++G + +G N A +S + TL G +G
Sbjct: 333 AVRQARVVAHNIAARILKRPEKTFAHHHVGGFVSIGDNYALLS---AKQFTLTGILGWFL 389
Query: 469 RKLAYLIRLPTDEHRL 484
Y+ +LP +RL
Sbjct: 390 WNFVYIHKLPIIRYRL 405
>gi|425461954|ref|ZP_18841428.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9808]
gi|389825118|emb|CCI25375.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9808]
Length = 459
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 180/446 (40%), Gaps = 74/446 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE-- 254
++ G +A T+EDA + R++ FE+ E++ I+ E
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRI----YLAFEKAEKE-----IDAEKR 155
Query: 255 ----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA---- 306
T + G P E L+ ++ G ++ EA + E
Sbjct: 156 QALLTFVIVGGGPTGVE-----LAGAIAEIAHGALRSDFHQINPTEAKILLLEGMERVLP 210
Query: 307 --IPNIAADKNSDKYILELQPAIKGLESQIFE---------------ADLVLWTVGSKP- 348
P+++A + L + + + I E A+ +LW G K
Sbjct: 211 PYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETILWAAGVKAS 270
Query: 349 ----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
+L N L+ G+ + L + G+ IF +GD + +PLP
Sbjct: 271 RMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYGNIFVIGDLANFAHQGDKPLPG 323
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 464
A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+ G I
Sbjct: 324 IAPVAMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK---FSGFI 380
Query: 465 GHSARKLAYLIRLPTDEHRLKVGVSW 490
A++ L +++L V V W
Sbjct: 381 AWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|120599888|ref|YP_964462.1| NADH dehydrogenase [Shewanella sp. W3-18-1]
gi|146292175|ref|YP_001182599.1| NADH dehydrogenase [Shewanella putrefaciens CN-32]
gi|386312846|ref|YP_006009011.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella putrefaciens 200]
gi|120559981|gb|ABM25908.1| NADH dehydrogenase [Shewanella sp. W3-18-1]
gi|145563865|gb|ABP74800.1| NADH dehydrogenase [Shewanella putrefaciens CN-32]
gi|319425471|gb|ADV53545.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella putrefaciens 200]
Length = 429
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/364 (27%), Positives = 149/364 (40%), Gaps = 37/364 (10%)
Query: 103 WQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL 162
W V L+D+S ++KP L+E+ G +D + D G ++ + ++
Sbjct: 26 WGGSDIIDVCLIDRSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGEIEQ- 84
Query: 163 CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLE 222
C D + G +LL+ I EYD+LVL+LG GA E +LE
Sbjct: 85 CDPDTKTIQLAAVYNDDGELLLDPRPI-EYDFLVLALGGVSNSFNTLGAEEHCIFLDSLE 143
Query: 223 DACRVDRKLSE--LERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 280
+A KL + L+ + GIV A TG E + S ++
Sbjct: 144 NANLFHHKLLDALLQLNETQERVSIGIVGA-------GATGVELAAELHHVIESVKE--- 193
Query: 281 VLGYF--VRCIRRVGEFEASVK-QPESGAIPNIAADKNSDKYILELQPAIK-------GL 330
GY + V EAS K P+ + A DK + L ++ G
Sbjct: 194 -YGYLNISKNHLDVHLIEASPKILPQLSERVSARAQAVLDKIGIRLHIGVQVKEVTREGF 252
Query: 331 ESQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRI 385
+Q + EA L +W G V+ P LP+ R Q E D + VKG I
Sbjct: 253 ITQDGDVIEAGLKVWAAG-------VKGPKAFQNFTKLPITPRNQVEVDACMRVKGQIDI 305
Query: 386 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
+ALGD + L SG+P+P AQ A Q AD N+ + D+P PF +++ G ++ L R
Sbjct: 306 YALGDCALLIQDSGQPVPPRAQAAAQMADTLFDNIVNRLQDKPEKPFVYKDYGSLVSLSR 365
Query: 446 NDAA 449
A
Sbjct: 366 FSAV 369
>gi|444313072|ref|ZP_21148633.1| NADH dehydrogenase [Ochrobactrum intermedium M86]
gi|443483605|gb|ELT46446.1| NADH dehydrogenase [Ochrobactrum intermedium M86]
Length = 423
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/389 (25%), Positives = 162/389 (41%), Gaps = 54/389 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+GGGF GL+ L+S Q+ L+D+ +F+P+LY++ S E+ + +IA
Sbjct: 3 RLIIVGGGFAGLWATRSLKS------ADIQITLIDRRNHHLFQPLLYQVASAELASPDIA 56
Query: 141 PRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L VQ + V + P ++ V+L+ G +EYD L+++
Sbjct: 57 VPLRHILKKQRNVQIWLGEVIEVLPDRNV-------------VVLDDGRELEYDSLLIAT 103
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFERLEEKGIVQAINVETTIC 258
GA P + A TLEDA + K+ E E E EK +A + I
Sbjct: 104 GATHAYFGNPQWEKHAPGIKTLEDAMHLRNKIFEAFEYAETEPDPEK---KAAWLNFAIV 160
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES-----GAIPN---- 309
G G A LS + G F R + A+V+ E+ GA P+
Sbjct: 161 GGGPTGVELAG--ALSDIAKHTLRGEF----RSIDPGMATVRLIEAGPKILGAFPDELSF 214
Query: 310 --------IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
+ + + + E+ L V+W G + P R
Sbjct: 215 AAELQLRRLGVEVVKNCRVTEINQHGYSLNGAFVPCRTVIWAAGVQ------ASPLGRRL 268
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 421
++PL+ G+ + ++ L V GH IF GD +++ + +GRP+P A A Q + L
Sbjct: 269 NVPLDRAGRVKVEKNLSVPGHGNIFVAGDLASI-EVNGRPVPGVAPAAKQMGAYVAELLK 327
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAAV 450
A + R F + + G + I+GR A V
Sbjct: 328 ARLAGRQEPVFDYHDKGSLAIIGRMAAVV 356
>gi|256762926|ref|ZP_05503506.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis T3]
gi|256684177|gb|EEU23872.1| pyridine nucleotide-disulphide oxidoreductase [Enterococcus
faecalis T3]
Length = 403
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 164/396 (41%), Gaps = 66/396 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K + ILG G+ GL T L+ + K ++ LVD++ L+E+ +G A +
Sbjct: 3 KKHVVILGAGYAGLKTLRELQ----KGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I D++ F + VK + + TV LE G + YD+LV+S
Sbjct: 59 ITYNIMDVVDEKMTTFIQGTVKTIDAATQ-------------TVALEDGQTINYDYLVVS 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG E + +PG E A ++ A V + E + R ++ + + ++ + +C
Sbjct: 106 LGFESESFGIPGVQEHALQMVDVKTALNVYEHIQE-QMRQYKATQNEEFLKIV-----VC 159
Query: 259 PTGTPGN-----------REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI 307
G G + A + +SA ++Q+ Y V + R+ E A
Sbjct: 160 GAGFTGIELLGSLVENKPKFAEIAGVSADQIQI---YCVEAVTRLLPMF-----NEKLAN 211
Query: 308 PNIAADKNSDKYILELQP--AIKGLESQIFE-----------ADLVLWTVGSKPLLPHVE 354
+ K+S ++L +P IK L + +++ A ++WT G HV
Sbjct: 212 YGVQLLKDSAIHLLLGKPIKEIK-LGAVVYQDNEAGDLAELSAKTIIWTTGVSG--SHV- 267
Query: 355 PPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQ 412
+ D A RG+ L H ++ +GD SA+ D+ + RP P TAQ+A +
Sbjct: 268 -----VGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKM 322
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
A N+ A + PF F++ G + +G A
Sbjct: 323 GAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRA 358
>gi|116873753|ref|YP_850534.1| pyridine nucleotide-disulfide oxidoreductase [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116742631|emb|CAK21755.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria welshimeri serovar 6b str. SLCC5334]
Length = 403
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 171/392 (43%), Gaps = 58/392 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDH---LGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ ++ T F +D V + + LG NG ++ YD+L
Sbjct: 59 LMYPLDKVVNTTKTTFIQDTVVKINKDEKTVTLGANGNIS----------------YDYL 102
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
+++LG+E + + G E+AF +++E ++ R + E K +
Sbjct: 103 LIALGSEAETFGISGLKEYAFTITSVESVKKI--------RAHIEAQFAKWKTDPRDELL 154
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFV-------RCI----RRVGEFEASVKQPES 304
TI G L L+ R +LV Y V C+ + + +F+A +
Sbjct: 155 TIIVGGAGFTGIEFLGELTNRIPELVKEYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGV 214
Query: 305 GAIPNIAADKNSDKYILELQP-AIKGLESQI----FEADLVLWTVGSKPLLPHVEPPNNR 359
G + + + + K + E +K ES+ +A ++W G + N+
Sbjct: 215 GVLEDRGVEFHVGKPVKEATADGVKYAESENEVREIKAATIIWAAGVR--------GNSV 266
Query: 360 LHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAG 417
+ A RG+ + + L V G+ I +GD S + + ++ RP P TAQ+A QQAD A
Sbjct: 267 IEASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAA 326
Query: 418 WNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 448
NL + + L F + G + LG NDA
Sbjct: 327 VNLAKLVKGETDLQDFVYHEKGTVCSLGDNDA 358
>gi|425467346|ref|ZP_18846629.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9809]
gi|389829901|emb|CCI28422.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9809]
Length = 458
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 101/447 (22%), Positives = 177/447 (39%), Gaps = 76/447 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+I+ P L + D + P G V+LE + YD L
Sbjct: 57 ADISSPLRLILRGHENTDILLDHAIDIDPVK-------------GEVILEDHPPIAYDQL 103
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE- 254
V++ G +A T+EDA + R++ FE+ E++ I+ E
Sbjct: 104 VIATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRI----YLAFEKAEKE-----IDAEK 154
Query: 255 -----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG---- 305
T + G P E L+ ++ G ++ EA + E
Sbjct: 155 RQALLTFVIVGGGPTGVE-----LAGAIAEIAHGALRSDFHQINPTEAKILLLEGMDRVL 209
Query: 306 --AIPNIAADKNSDKYILELQPAIKGLESQIFE---------------ADLVLWTVGSKP 348
P+++A + L + + + I E A+ +LW G K
Sbjct: 210 PPYSPDLSAKAAASLIKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETILWAAGVKA 269
Query: 349 -----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 403
+L N L+ G+ + L + G+ IF +GD + +PLP
Sbjct: 270 SRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYANIFVIGDLANFAHQGDKPLP 322
Query: 404 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 463
A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+ G
Sbjct: 323 GIAPVAMQEGEYLANLLISRLKGQTIQPFHYIDRGSLAVIGQNAAVVDLGFVK---FSGF 379
Query: 464 IGHSARKLAYLIRLPTDEHRLKVGVSW 490
I A++ L +++L V V W
Sbjct: 380 IAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|425442931|ref|ZP_18823165.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9717]
gi|389715893|emb|CCH99798.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9717]
Length = 456
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 102/446 (22%), Positives = 180/446 (40%), Gaps = 74/446 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+L+ + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILKDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE-- 254
++ G +A T+EDA + R++ FE+ E++ I+ E
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRI----YLAFEKAEKE-----IDAEKR 155
Query: 255 ----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG----- 305
T + G P E L+ ++ G ++ EA + E
Sbjct: 156 QALLTFVIVGGGPTGVE-----LAGAIAEIAHGALRSDFHQINPTEAKILLLEGMDRVLP 210
Query: 306 -AIPNIAADKNSDKYILELQPAIKGLESQIFE---------------ADLVLWTVGSKP- 348
P+++A + L + + + I E A+ +LW G K
Sbjct: 211 PYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVSVLQGEKTTEIAAETILWAAGVKAS 270
Query: 349 ----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
+L N L+ G+ + L + G+ IF +GD + +PLP
Sbjct: 271 RMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYANIFVIGDLANFAHQGDKPLPG 323
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 464
A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+ G I
Sbjct: 324 IAPVAMQEGEYLANLLISRLKGQTIQPFHYIDRGSLAVIGQNAAVVDLGFVK---FSGFI 380
Query: 465 GHSARKLAYLIRLPTDEHRLKVGVSW 490
A++ L +++L V V W
Sbjct: 381 AWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|383778463|ref|YP_005463029.1| putative pyridine nucleotide-disulfide oxidoreductase [Actinoplanes
missouriensis 431]
gi|381371695|dbj|BAL88513.1| putative pyridine nucleotide-disulfide oxidoreductase [Actinoplanes
missouriensis 431]
Length = 439
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 154/388 (39%), Gaps = 56/388 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV------- 134
+ I+G GF G+ A RL + + + +V LVD++ F+P+LY++ + E+
Sbjct: 7 VVIVGAGFAGVACARRLAA-----EPRARVTLVDRNGYHQFQPLLYQIATAELAPRDIRF 61
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
D E+ R A + TG V + P H +V ++ D
Sbjct: 62 DLHEMFARHASVRTRTG------EVVAIDP-------------HSPSVTFADDSMLAADV 102
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFER--LEEKGIVQAIN 252
LVL GA+P PGA + P +L DA RV ++ EL R + L G + +
Sbjct: 103 LVLGAGAQPNFFHTPGAEQHTVPLYSLTDAERVRGRILELFRDAAAKPELAADGALTFVV 162
Query: 253 VETTICPTGTPG-----------NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQ 301
V T G + L + AR + + LG+ V +V+Q
Sbjct: 163 VGGGPTGVETAGALAEIVHDVMPHVYPHLAIAGARVILVDLGHTVLTAFSDDAHSYAVQQ 222
Query: 302 PESGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRL 360
+ + + E+ P + + + LV+W G P
Sbjct: 223 -----LTRRGVELRLGVSVKEVTPDGVTLSDGTTIKTRLVVWGGGQS------AAPLASR 271
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 420
LP G+ + L V G P+++ALGD + + + G LP VA Q D+A N+
Sbjct: 272 SGLPQGRGGRIDVQPDLSVAGFPKVYALGDVANIPGADGEALPQLGSVAQQAGDWAAGNI 331
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDA 448
A + PF +++ G M ++GR A
Sbjct: 332 IADLEGDRRQPFHYRDKGIMAMIGRKAA 359
>gi|256372313|ref|YP_003110137.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Acidimicrobium ferrooxidans DSM 10331]
gi|256008897|gb|ACU54464.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Acidimicrobium ferrooxidans DSM 10331]
Length = 432
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 103/418 (24%), Positives = 169/418 (40%), Gaps = 51/418 (12%)
Query: 61 VTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120
V + + SQ+ +PR+ ++G GF GL +E L D ++++VD+
Sbjct: 5 VDQDQSTQSQSGDLRQGSRPRVVVVGAGFAGLAA---IEVL---RDAPVELVVVDRHNFT 58
Query: 121 VFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGG 180
F+P+LY++ + ++A ++A +L F + G +A
Sbjct: 59 TFQPLLYQVATAGLNAGDVAYPLRTVLRRARHAHF--------------IQGTLAEVDAK 104
Query: 181 T--VLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN 238
+ LE G IV+YD+L+L +GA +PGA E + TL+ A V + +
Sbjct: 105 RRFIGLEDGRIVDYDYLILGIGASASFFGIPGAEERSHTIYTLDAAVDVRNHIFQ----R 160
Query: 239 FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL---VLG---YFVRCIRRV 292
FE G+ + + T A+ L+ R + +LG V I +
Sbjct: 161 FEYAASHGVHDGVLTFVVVGGGATGVELAGAIAELAHRALYTDFTMLGPDDVKVVLIEQR 220
Query: 293 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF--------EADLVLWTV 344
G + + S + + + L ++ +E + LVLW
Sbjct: 221 GRLLEAFHEDLS---EYARRELRARGVTVLLNETVESVEEGLIVLKSGREIRNGLVLWAA 277
Query: 345 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
G V P ++L LP G+ L V G RIFA+GD + + G PLP
Sbjct: 278 GIA-----VPPVVSKL-GLPTGRGGRIMVGSDLRVVGSDRIFAVGDVALSTNRDGAPLPQ 331
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 462
AQ A Q + A + A + PFR+++ G M +GR AAV+ GV L G
Sbjct: 332 LAQPALQGGEHAARQILALLAGSETEPFRYRDKGIMATIGRR-AAVA-ELAGGVRLHG 387
>gi|330817557|ref|YP_004361262.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia gladioli BSR3]
gi|327369950|gb|AEA61306.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia gladioli BSR3]
Length = 430
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 171/392 (43%), Gaps = 44/392 (11%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K +PRI ++GGG GL A RL + + ++ +V L+D+S ++KPML+ + +G
Sbjct: 2 KHRPRIVVVGGGIAGLLLATRLGDTLGRK-QRAEVTLIDKSPTHIWKPMLHTIAAG---T 57
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMAC--THGGTVLLESGLIVEYDW 194
EI + LA+ F + + D +A T G L+ I YD
Sbjct: 58 REIQQQQVIFLAHAREHGFTYQPGEMVGIDRATREIDLAAIETSAGETLIGPRRI-GYDV 116
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE 254
L+L++G+ PG +++ + L R F+ +V ++
Sbjct: 117 LILAVGSRANDFGTPGVTSHCH---FIDNQVEAEAFNEALRVRIFQ-----SVVMNRDLR 168
Query: 255 TTICPTGTPGNREAA-----LKVLS-----ARKVQLVLGYFVRCIRRVGEFEASVKQPES 304
+I G G AA L+V S A + +L L + R + F +V +
Sbjct: 169 VSIVGAGATGVELAAELSHLLEVASSYGDPAIRERLKLSLYESGPRILAAFPETVSKSSE 228
Query: 305 GAIPNIAADKNSDKYILELQPAIKGLE-----SQIFEADLVLWTVGSKPLLPHVEPPN-- 357
+ I + ++ + P +GL+ SQ AD+++W+ G V+ P
Sbjct: 229 AQLRQIGFEVHTGTRVTAAGP--EGLQLADGGSQ--PADIMVWSAG-------VKAPTFL 277
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS-GRPLPATAQVAFQQADFA 416
+L + +N Q TL IFA+GD ++ + RPLP TAQVA QQA F
Sbjct: 278 GQLAGIEVNRSNQVAIGPTLQSVDDEHIFAVGDCASYTPAGRERPLPPTAQVATQQARFL 337
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+L A ++ +PL F FQ+LG ++ + +A
Sbjct: 338 ARHLPAWLDGKPLPDFHFQDLGALVSISDYNA 369
>gi|209517297|ref|ZP_03266141.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia sp. H160]
gi|209502306|gb|EEA02318.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia sp. H160]
Length = 431
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 164/393 (41%), Gaps = 45/393 (11%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K RI I+GGG G+ A RL + + + V L+D+S ++KPML+ + +G D
Sbjct: 2 KDPTRIVIVGGGIAGILLATRLGDRLGRAGEA-SVTLIDRSPTHIWKPMLHTIAAGTRD- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMAC--THGGTVLLESGLIVEYDW 194
+ + L++ F + +C D +A H G ++LE V YD
Sbjct: 60 --VNQQRVIYLSHAREHSFTYQPGEMCGLDRQRREVQLAAIEAHEGGLMLEP-RTVPYDV 116
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIV----QA 250
LVLS+G+ VPG E + + A + L E R+ + EE + A
Sbjct: 117 LVLSIGSRANDFGVPGVMEHCHLIDSQQQAETFNVALREHSLRSVVKDEELRVAIVGAGA 176
Query: 251 INVETTI---------CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQ 301
VE + G P RE +L L R + F +
Sbjct: 177 TGVELSAELSHLFELAASYGDPAIRE-----------RLRLTLLEAGPRVLPAFPPEISS 225
Query: 302 PESGAIPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPN--N 358
+ I + + ++P + + ++ +ADL++W G V+ P+ N
Sbjct: 226 ESQQRLEKIGLRVMTSTGVSAVEPGGFRYGDGKLVDADLMVWAAG-------VKAPDFMN 278
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAG 417
RL L N Q TL IFALGD ++L + + R LP TAQVA QQA+
Sbjct: 279 RLAGLETNRSNQIVVSVTLQALNEENIFALGDCASLTPEGAQRALPPTAQVAAQQAEHLA 338
Query: 418 WNL--WAAINDRPLLPFRFQNLGEMMILGRNDA 448
+L W + +PL F F++ G ++ L + D+
Sbjct: 339 RHLPEWVR-HSKPLPRFAFRDFGSLVSLSKYDS 370
>gi|160874289|ref|YP_001553605.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella baltica OS195]
gi|378707533|ref|YP_005272427.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella baltica OS678]
gi|418023156|ref|ZP_12662141.1| NADH dehydrogenase [Shewanella baltica OS625]
gi|160859811|gb|ABX48345.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Shewanella baltica OS195]
gi|315266522|gb|ADT93375.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella baltica OS678]
gi|353537039|gb|EHC06596.1| NADH dehydrogenase [Shewanella baltica OS625]
Length = 429
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 149/363 (41%), Gaps = 37/363 (10%)
Query: 103 WQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL 162
W V L+D+S ++KP L+E+ G +D + D G ++ + ++
Sbjct: 26 WGGSDVVDVCLIDRSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGEIEQ- 84
Query: 163 CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLE 222
C D + G +LLE I +YD+LVL+LG GA E +LE
Sbjct: 85 CDPDAKSIQLAAVYNDEGELLLEQRQI-DYDFLVLALGGVSNSFNTLGADEHCIFLDSLE 143
Query: 223 DACRVDRKLSE--LERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 280
+A KL + L+ + GIV A TG E + S ++
Sbjct: 144 NANLFHHKLLDALLQLNETQERVSIGIVGA-------GATGVELAAELHHVIESVKE--- 193
Query: 281 VLGYFVRCIRR--VGEFEASVK-QPESGAIPNIAADKNSDKYILELQPAIK-------GL 330
GY V EAS K P+ + A DK + L ++ G
Sbjct: 194 -YGYLNIATHHLDVHLIEASPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTRDGF 252
Query: 331 ESQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRI 385
+Q + +A L +W G V+ P LP+ R Q E D+ + VKGH I
Sbjct: 253 ITQDGDVIKAGLKVWAAG-------VKGPKAFQNFTKLPITPRNQVEVDDCMRVKGHQDI 305
Query: 386 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
+ALGD + L SSG+P+P AQ A Q AD N+ + +P F +++ G ++ L R
Sbjct: 306 YALGDCALLIQSSGQPVPPRAQAAAQMADTLFDNIVNRLQGKPEKAFVYKDYGSLVSLSR 365
Query: 446 NDA 448
A
Sbjct: 366 FSA 368
>gi|383822680|ref|ZP_09977897.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Mycobacterium phlei RIVM601174]
gi|383330767|gb|EID09287.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Mycobacterium phlei RIVM601174]
Length = 387
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 100/372 (26%), Positives = 151/372 (40%), Gaps = 47/372 (12%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I ILG G+ G+ L L + + Q+ + LV+ RF+ + L++ +G+ A P
Sbjct: 4 ILILGAGYAGMSATLGLAARL-QNRDDVHITLVNPQTRFLERLRLHQAAAGQALADLQIP 62
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D LA TGV F V G++ TV ++ + YD LV +LG
Sbjct: 63 ---DRLAGTGVDFACGWVT--------GID-----ADARTVRIDDTTTLHYDTLVYALGG 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG-IVQAINVETTICPT 260
VPG EFAF ++ +DA L R+ ERL +V A T +
Sbjct: 107 VADTADVPGVDEFAFTLNSAQDAA--------LLARHLERLPGGAPVVVAGGGLTGVESA 158
Query: 261 GTPGNREAALKV-LSARKV-QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 318
R L V L +R++ V+G R G V+ AI + D
Sbjct: 159 AEIAERHPDLDVTLVSREIPAAVMGERARARVHRGLERLGVRIRSGAAIVKVTPD----- 213
Query: 319 YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 378
A+ + + A VLWT G + P L ++ RG+ TDE L
Sbjct: 214 -------AVALDDGSMVPAQAVLWTAGIR------VSPLAAAAGLQVDERGRIVTDEYLR 260
Query: 379 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLG 438
HP ++A+GD++A+R G + T Q A N+ ++ + FRF
Sbjct: 261 SVSHPDVYAVGDAAAVRQGYG-VMHGTCQAGISMALHTAINITRSLKSKQPRRFRFGYFH 319
Query: 439 EMMILGRNDAAV 450
+ + LGR DA V
Sbjct: 320 QPVSLGRRDAVV 331
>gi|433447019|ref|ZP_20410757.1| NADH dehydrogenase, FAD-containing subunit [Anoxybacillus
flavithermus TNO-09.006]
gi|432000154|gb|ELK21057.1| NADH dehydrogenase, FAD-containing subunit [Anoxybacillus
flavithermus TNO-09.006]
Length = 408
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 97/416 (23%), Positives = 170/416 (40%), Gaps = 101/416 (24%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP + +LG G+GGL T RL+ ++ ++ + LV++ + L+E +G +
Sbjct: 5 KKPNVVVLGAGYGGLMTVTRLQKMIGVNE--ASITLVNKHDYHYESTWLHEAAAGTLHHE 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ AD++ + V+F +D V+ + + VLL++ + YD+LV+
Sbjct: 63 RVRYAIADVIDQSKVKFIQDTVEKINLEEK-------------QVLLQNHEPLTYDYLVV 109
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERRNFERLE------ 243
+LG E + + G E+AF + + A ++ + +E E+R+ ERL
Sbjct: 110 ALGFESETFGIKGLKEYAFSIANVNAARQIREHIEYQFATYSTEEEKRD-ERLTIVVGGA 168
Query: 244 ------------------------EKGIVQAINVET--TICPTGTPGNREAALKVLSARK 277
+ V+ I VE T+ P P E A+ VL +
Sbjct: 169 GFTGIEFLGELVNRVPELCREYDVDPNRVRIICVEAAPTVLPGFDPELVEYAVNVLEKKG 228
Query: 278 VQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 336
V+ +G ++ C PE + + D + E++
Sbjct: 229 VEFKIGTAIKEC------------TPEGIIV-------SKDDQVEEIK------------ 257
Query: 337 ADLVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSS-A 393
A V+W G + +R+ D RG+ + D L GH +F +GD +
Sbjct: 258 AGTVVWAAGVR---------GSRVIDESGFEAMRGRVKVDPFLRAPGHEDVFVVGDCALI 308
Query: 394 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 448
+ + + RP P TAQ+A QQ + NL I + L PF+ G + LG +DA
Sbjct: 309 INEETNRPYPPTAQIAMQQGEVCAKNLAVLIRGQGELQPFKPDLKGTVCSLGHDDA 364
>gi|340357767|ref|ZP_08680375.1| pyridine nucleotide-disulfide oxidoreductase [Sporosarcina
newyorkensis 2681]
gi|339616646|gb|EGQ21289.1| pyridine nucleotide-disulfide oxidoreductase [Sporosarcina
newyorkensis 2681]
Length = 405
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 110/444 (24%), Positives = 180/444 (40%), Gaps = 79/444 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K+P I +LG G+GGL T + L+ + D+ ++L+++++ L+E +G +
Sbjct: 2 KRPTILVLGAGYGGLMTVVNLQKSLGADE--ADIVLINKNDYHYESTWLHEAAAGTMAPE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
++ A ++ + VQF K V + V T+ G+ YD+LV+
Sbjct: 60 QVRYDIASVINSNKVQFVKAEVT------GIDVKNKNVTTNIGSHT--------YDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG-----IVQAIN 252
+LG E + +PG ++A + ++ A R R E + + EEK IV
Sbjct: 106 ALGFEGETFGIPGLDKYALSIANVK-AARQIRDHMEYQFATWSLEEEKDDSRLTIVVGGA 164
Query: 253 VETTICPTGTPGNR--------------------EAALKVLSARKVQLVLGYFVRCIRRV 292
T I G GNR EAA VL +LV Y VR +
Sbjct: 165 GFTGIEYLGELGNRVPELCKEYDVPAEKVRILCVEAAPMVLPGFDPELV-EYAVRQLESK 223
Query: 293 GEFEASVKQPESGAIP-NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 351
G E S+ P A P + K D++ + +A V+W G +
Sbjct: 224 G-IEFSIGTPVVEATPEGVKIKKGEDEF-------------EFIKAGTVVWAAGVR---- 265
Query: 352 HVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQV 408
NR+ + N R + + D+ L G +F +GD S + ++ RP P TAQ+
Sbjct: 266 -----GNRMIEESGIENMRARVKVDKDLRAPGFEDVFVIGDCSLMINEAINRPYPPTAQI 320
Query: 409 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 468
A QQ + N+ A I + F G + LG +DA GV D I +
Sbjct: 321 AMQQGEMCANNIIALIKGKQTTEFVPDLKGSVCSLGDSDAI-------GVVFDKKI--TG 371
Query: 469 RKLAYLIRLPTDEHRLKVGVSWLT 492
K +++ ++ + VG LT
Sbjct: 372 TKASFMKKMIDNRALFMVGGVGLT 395
>gi|443328561|ref|ZP_21057157.1| NADH dehydrogenase, FAD-containing subunit [Xenococcus sp. PCC
7305]
gi|442791860|gb|ELS01351.1| NADH dehydrogenase, FAD-containing subunit [Xenococcus sp. PCC
7305]
Length = 446
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/434 (22%), Positives = 177/434 (40%), Gaps = 65/434 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL A L K +V+L+D+ F P+LY++ + ++ ++
Sbjct: 9 RVVIVGAGFGGLQAAQSLA------HKAVEVILIDRHNYHSFIPLLYQVATAQLAPEQVV 62
Query: 141 PRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+LL ++ V F +V+ ++ P ++ + + YD+LVL+
Sbjct: 63 VPIRNLLRSSPNVSFVSAKVET--------IDFP------AKIVQLANETISYDYLVLAT 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL---SELERRNFERLEEKGIVQAINVETT 256
G+ + V A +FAFP L DA + + E R + K + +
Sbjct: 109 GSRSQFFGVESAKKFAFPLKNLGDAINLRHHILSCCEQGSRELDFARRKKL-----LTIA 163
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIPNIA 311
I G G L+ V+LV ++ R+ + ++ SG P+
Sbjct: 164 IVGGGATGVE------LAGSLVELVNDALLKDYPRLDSQDVTIILVHSGDRLLSEFPSSL 217
Query: 312 ADKNSDK-----YILELQPAIKGLESQIFEAD--------LVLWTVGSKPLLPHVEP-PN 357
D + K + L+ + + +Q FE D V+W VG +P P P
Sbjct: 218 GDYTASKLRRLGVKVMLRSKVTSVSAQGFELDDGTWFASATVIWAVGVTGAIPKSFPFPQ 277
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
+ +G+ + TL + +P +FA+GD + + +SS + L A A QQ +
Sbjct: 278 T-------SNQGKIKVSPTLQLAQYPEVFAIGDLAQV-NSSRQNLSGVAPEALQQGVYVA 329
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
+ I + PFR+ N G + I+G + + L G + +L+
Sbjct: 330 QAITKIIQGHSVRPFRYFNKGRLAIIG---CYCGVGKIGNLQLRGFLPWLFWLAVHLVYF 386
Query: 478 PTDEHRLKVGVSWL 491
P +RL + +SWL
Sbjct: 387 PNWHNRLMILMSWL 400
>gi|359775049|ref|ZP_09278393.1| putative NADH dehydrogenase [Arthrobacter globiformis NBRC 12137]
gi|359307647|dbj|GAB12222.1| putative NADH dehydrogenase [Arthrobacter globiformis NBRC 12137]
Length = 479
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 109/441 (24%), Positives = 179/441 (40%), Gaps = 57/441 (12%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ++GGG+ GLY AL+L+ + + V +VD ++P L E+ G ++A
Sbjct: 1 MLVVGGGYVGLYVALKLQKKI--ANAGGIVTVVDPLPYMTYQPFLPEVAGGNIEARHAVV 58
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
L T + + RV DH +A GG V Y +VLS GA
Sbjct: 59 SHRQHLKQT--ELIQGRV---VSIDHANRTAVVAPADGG-----DNFEVPYFDVVLSAGA 108
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLE---------EKG-----I 247
+ + G A+ T+E+A + K+ +R+E E+ +
Sbjct: 109 ITRTFPIKGLADKGIGLKTIEEAVALRNKV-------LDRIEVGSTMTDPAERARALTFV 161
Query: 248 VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPE---- 303
V C T AA+K K + V V + R+ E + KQ E
Sbjct: 162 VVGGGFAGIECITEMEDLARAAVKNNPRVKQEEVRFVLVEAMGRIMP-EVTAKQAEWVVE 220
Query: 304 ----SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
G + ++ + L+L +Q FE D ++WT G + P R
Sbjct: 221 HLRSRGIEVLLNTSLDNAEGSLKLINLPDKTPAQEFETDTLVWTAGVQ------ANPMVR 274
Query: 360 LHDLPLNARGQAETDETLCVKGHPRI----FALGDSSALRDSSGRPLP-----ATAQVAF 410
D PL RG+ L + G I +A GD +A+ D +G LP AQ A
Sbjct: 275 STDFPLEPRGRVRVLPDLRISGDEGIIDNAWAAGDIAAVPDLTGGGLPDGTCVPNAQHAL 334
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
+QA NLWA+ D+PL+ ++ +NLG + G + + + + L GP+ A +
Sbjct: 335 RQAKRLAKNLWASRWDKPLVDYKHKNLGAVAGFGEWKGVANINLLGRIGLKGPLAWLAHR 394
Query: 471 LAYLIRLPTDEHRLKVGVSWL 491
+ + +PT E + +V +W+
Sbjct: 395 GYHGMAMPTFERKFRVIFNWV 415
>gi|113971279|ref|YP_735072.1| NADH dehydrogenase [Shewanella sp. MR-4]
gi|113885963|gb|ABI40015.1| NADH dehydrogenase [Shewanella sp. MR-4]
Length = 429
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 146/363 (40%), Gaps = 53/363 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D+S ++KP L+E+ G +D + D G ++ + ++ C D +
Sbjct: 34 VCLIDKSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGEIEQ-CEPDAKTI 92
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
+ G +LLE I EYD+LVL+LG GA + +L++A +K
Sbjct: 93 QLAAVYSDSGELLLEPRQI-EYDYLVLALGGVSNSFNTLGAEKHCIFLDSLDNANLFHQK 151
Query: 231 LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 290
L + + E E+ V I G G AA L + + ++
Sbjct: 152 LLDALLQLNETQEK--------VSIGIVGAGATGVELAA-----------ELHHVIESVK 192
Query: 291 RVGEFEASVKQPESGAI---PNIA----------ADKNSDKYILELQPAIK-------GL 330
G S + I P I A DK + L ++ G
Sbjct: 193 EYGYLNISKHHLDVHLIEASPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTRDGF 252
Query: 331 ESQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRI 385
+Q + EA L +W G V+ P LP+ R Q E D + VKGH I
Sbjct: 253 ITQDGDVIEAGLKVWAAG-------VKGPKAFQNFSKLPITPRNQVEVDACMRVKGHQDI 305
Query: 386 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
+ALGD + L SG+P+P AQ A Q AD N+ + + + PF +++ G ++ L R
Sbjct: 306 YALGDCALLILESGQPVPPRAQAAAQMADTLYENIVSRLQGKAEKPFVYKDYGSLVSLSR 365
Query: 446 NDA 448
A
Sbjct: 366 FSA 368
>gi|374366070|ref|ZP_09624154.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cupriavidus basilensis OR16]
gi|373102361|gb|EHP43398.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cupriavidus basilensis OR16]
Length = 431
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 162/394 (41%), Gaps = 47/394 (11%)
Query: 77 KKKPRICILGGGFGGLYTALRL-ESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K RI I+GGG G+ A RL + L D V L+D+S ++KPML+ + +G D
Sbjct: 2 RKPTRIVIVGGGIAGILLATRLGDRLGLPGDAT--VTLIDRSPTHIWKPMLHTIAAGTRD 59
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHL--GVNGPMACTHGGTVLLESGLIVEYD 193
+ + LA+ F + +C D V G ++LE V YD
Sbjct: 60 ---VNQQRVVYLAHASRHGFTYQPGEMCGLDRQLREVQLDAIRMQDGKLVLEP-RTVPYD 115
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINV 253
LVLSLG+ V G E + + A + L R+ + EE +
Sbjct: 116 VLVLSLGSRANDFGVLGVKEHCHLIDSQQQAETFNAALRARAVRSVVKGEE--------L 167
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR------------RV-GEFEASVK 300
I G G L +R +L GY IR RV F +
Sbjct: 168 RVAIVGAGATG---VELSAELSRLFELAAGYGDTTIRDRLSLTLLESGPRVLPAFPPEIS 224
Query: 301 QPESGAIPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPN-- 357
+ NI + + +P + + ++ EADL++W G V+ P+
Sbjct: 225 ASSQQRLENIGFRVLTSTAVTSAEPGGFRYGDGKLAEADLMVWAAG-------VKAPDFM 277
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFA 416
N L L N Q TL +IFALGD ++L + + RPLP TAQVA QQAD+
Sbjct: 278 NSLAGLETNRANQIVVSRTLQALHDEQIFALGDCASLTPEGAQRPLPPTAQVATQQADYL 337
Query: 417 GWNL--WAAINDRPLLPFRFQNLGEMMILGRNDA 448
+L W +PL F F++ G ++ L DA
Sbjct: 338 ARHLPGWLR-QSKPLPGFVFRDFGSLVSLSDYDA 370
>gi|398828325|ref|ZP_10586526.1| NADH dehydrogenase, FAD-containing subunit [Phyllobacterium sp.
YR531]
gi|398218360|gb|EJN04870.1| NADH dehydrogenase, FAD-containing subunit [Phyllobacterium sp.
YR531]
Length = 431
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 101/429 (23%), Positives = 164/429 (38%), Gaps = 49/429 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ R+ I+G GFGGL T L + L+DQ +F+P+LY++ + + E
Sbjct: 10 RHRLVIVGAGFGGLVTVQNLRK------ADIDITLIDQRNHHLFQPLLYQVATSTLATSE 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA LL + FK+ LL DH+ T TV G + YD LVL+
Sbjct: 64 IAWPIRHLL-----RKFKNVKTLLGTVDHVD-------TAKRTVSTVDGETIPYDTLVLA 111
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLE-EKGIVQAINVETTI 257
GA FA TLEDA + R++ FE+ E E + + T +
Sbjct: 112 TGARHAYFGHDDWEPFAPGLKTLEDATMIRRRILT----AFEKAEREPDPAKREELLTFV 167
Query: 258 CPTGTPGNREAA--------------LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPE 303
G P E A +V+ ++VL R +G F +
Sbjct: 168 IIGGGPTGVEIAGTLADLARDTLKGDFRVIDPAMAKVVL--IEGGSRVLGAFNEELSAYA 225
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 363
A+ + + + A ++W G + P + +
Sbjct: 226 QRALEKLGVTVHVGNPVTACHADGVEFAGHSLRAKTIIWAAGVQ------ASPAAKWLNA 279
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
P + G+ + L HP IF +GD++ + + +P A A QQ + A
Sbjct: 280 PADRAGRLAVNPDLTAPDHPEIFVIGDTATVANGDKGNVPGIAPAAKQQGAHVAKTIKAR 339
Query: 424 I-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 482
+ D PFR+++ G++ +G+ A F++ L G LA++ L +
Sbjct: 340 LAGDNEPKPFRYRHAGDLATIGKRAAVTDFGFIK---LKGYPAWWLWGLAHIYFLIGVRN 396
Query: 483 RLKVGVSWL 491
RL V +SWL
Sbjct: 397 RLAVALSWL 405
>gi|146279372|ref|YP_001169530.1| hypothetical protein Rsph17025_3344 [Rhodobacter sphaeroides ATCC
17025]
gi|145557613|gb|ABP72225.1| hypothetical protein Rsph17025_3344 [Rhodobacter sphaeroides ATCC
17025]
Length = 455
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 157/392 (40%), Gaps = 63/392 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ ILG GF GL A L + V ++D+ +F+P+LY++ + + A +IA
Sbjct: 18 RVVILGAGFAGLQAAKSL------GRRGIPVTVIDRQNHHLFQPLLYQVATAALSAPDIA 71
Query: 141 PRFADLLANT-GVQ-FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+L V+ D V++ + C HG +V YDWL+L+
Sbjct: 72 EPIRSILRRYPSVEVLLGDVVRIDTGRRQV------HCAHGA--------VVAYDWLILA 117
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERL---EEKGIVQAINVE 254
GA + A T+EDA R+ R L E + ER EE+ + I V
Sbjct: 118 TGAVTGYFGHDDWSRVAPGLKTIEDARRIRTRVLMSFE--HAERCTDPEERARLMTIAV- 174
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA-------- 306
PTG LS +L VR R + A V E+G
Sbjct: 175 IGGGPTGVE---------LSGALAELARFTLVRDFRHIRPDAARVLLVEAGPRLLGPFQE 225
Query: 307 ---------IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
+ + + + + + LE + LV+W G P
Sbjct: 226 ASADYARQRLERLGVRVMTGRGVEAITAESLTLEGETLPVGLVIWAAGVT-----ASPLA 280
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
+L ++ + G+ +E L V G R+ A+GD + GRPLP AQVA QQ G
Sbjct: 281 RQLGEV--DRGGRIAVNERLEVVGQSRVLAMGDVALCPGEDGRPLPGLAQVAKQQGQHLG 338
Query: 418 WNLWAAI-NDRPLLPFRFQNLGEMMILGRNDA 448
+L A + + PL PF +++ G I+GR+ A
Sbjct: 339 RSLGAHLASGAPLEPFTYRSCGNTSIVGRHAA 370
>gi|167589902|ref|ZP_02382290.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ubonensis Bu]
Length = 433
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 156/385 (40%), Gaps = 38/385 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + QV +VD+S V+KPML+ + +G D +
Sbjct: 9 RIVIVGGGIAGLQLATRLGERLGKSGRA-QVTVVDRSPTHVWKPMLHTIAAGTRDVQQQQ 67
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F G + ++ L + G + G VL L EYD L+LSLG
Sbjct: 68 VIFLAHAREHGYTYQPGELQGLDRARRRVQLGEIRSQDGERVLEAREL--EYDVLILSLG 125
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ VPG E + + A + L R+ R E + I
Sbjct: 126 SQANDFGVPGVREHCYFIDSQRQAETFNEALRMRVFRSVARDEP--------LRVAIVGA 177
Query: 261 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI--PNIAADKNSD- 317
G G L +R +++ Y +R P A P I+A
Sbjct: 178 GATG---VELAAELSRLLEVAQAYGDTTVRERLRLTLLESGPRILAAFPPRISASAQRRL 234
Query: 318 ---KYILELQPAIKGLESQIF--------EADLVLWTVGSKPLLPHVEPPN--NRLHDLP 364
+ + + +++ F EADL++W G V+ P+ L L
Sbjct: 235 EQIGFHVLTSTRVSSADARGFHYGDGSFAEADLMVWAAG-------VKAPDFMQALGGLD 287
Query: 365 LNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
N Q TL G +FA+GD +S L D RPLP TAQVA QQA+ +L A
Sbjct: 288 TNRANQIVVGPTLQATGDAHVFAIGDCASLLPDGYERPLPPTAQVATQQAEHLAKHLPAW 347
Query: 424 INDRPLLPFRFQNLGEMMILGRNDA 448
++ +P+ F F + G ++ + DA
Sbjct: 348 LDGKPMPAFAFHDFGALVSISDYDA 372
>gi|152999668|ref|YP_001365349.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella baltica OS185]
gi|151364286|gb|ABS07286.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Shewanella baltica OS185]
Length = 429
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 150/363 (41%), Gaps = 37/363 (10%)
Query: 103 WQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL 162
W V L+D+S ++KP L+E+ G +D + D G ++ + ++
Sbjct: 26 WGGSDVVDVCLIDRSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGEIEQ- 84
Query: 163 CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLE 222
C D + G +LLE I +YD+LVL+LG GA E +LE
Sbjct: 85 CDPDAKSIQLAAVYNDEGELLLEQRQI-DYDFLVLALGGVSNSFNTLGADEHCIFLDSLE 143
Query: 223 DACRVDRKLSE--LERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 280
+A KL + L+ + GIV A TG E + S ++
Sbjct: 144 NANLFHHKLLDALLQLNETQERVSIGIVGA-------GATGVELAAELHHVIESVKE--- 193
Query: 281 VLGYF--VRCIRRVGEFEASVK-QPESGAIPNIAADKNSDKYILELQPAIK-------GL 330
GY + V EAS K P+ + A DK + L ++ G
Sbjct: 194 -YGYLNIAKHHLDVHLIEASPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTRDGF 252
Query: 331 ESQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRI 385
+Q + +A L +W G V+ P LP+ R Q E D+ + VKGH I
Sbjct: 253 ITQDGDVIKAGLKVWAAG-------VKGPKAFQNFTKLPITPRNQVEVDDCMRVKGHQDI 305
Query: 386 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
+ALGD + L SSG+P+P AQ A Q AD N+ + +P F +++ G ++ L R
Sbjct: 306 YALGDCALLIQSSGQPVPPRAQAAAQMADTLFDNIVNRLQGKPEKAFIYKDYGSLVSLSR 365
Query: 446 NDA 448
A
Sbjct: 366 FSA 368
>gi|325964264|ref|YP_004242170.1| NADH dehydrogenase, FAD-containing subunit [Arthrobacter
phenanthrenivorans Sphe3]
gi|323470351|gb|ADX74036.1| NADH dehydrogenase, FAD-containing subunit [Arthrobacter
phenanthrenivorans Sphe3]
Length = 417
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 104/461 (22%), Positives = 176/461 (38%), Gaps = 102/461 (22%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ ++G GF G+ A L K +VLL+D + F+P+LY++ + +V IA
Sbjct: 6 QVIVIGAGFAGISAAKEL------GRKGVRVLLIDSNNYHQFQPLLYQVATSQVGVSAIA 59
Query: 141 PRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ V+ V + ++H TV G LV+++
Sbjct: 60 RPIRSVFRRLRNVRVLTAEVAAIDAANH-------------TVTTAGGDTFRAGILVVAV 106
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNFE------------------ 240
GA P +PGA E A P ++ DA R+ ++ L+R + E
Sbjct: 107 GAVPNFFNIPGAEEHALPLYSVVDATRLGTSVTRLLDRADREPGTPVDMVVVGGGPTGVE 166
Query: 241 -------------------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 281
L + V +++ T+ +P ++E + L+ VQL
Sbjct: 167 TAGALAEHIKFVVTKYFSPELASRCRVHLVDMLPTVLTMFSPKSQEYTWRRLAKIGVQLH 226
Query: 282 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 341
+G V +R G V + IP +V+
Sbjct: 227 MGVSVAEVRDDG-----VTLADGTDIPG----------------------------GIVV 253
Query: 342 WTVGSKPLLPHVEPPNNRL--HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 399
W G K N L LPL G+ + L V G ++ +GD++ + DS+G
Sbjct: 254 WAGGLKG--------GNLLAGSGLPLGKGGRVDVGTDLAVPGVEGVYVVGDAANITDSTG 305
Query: 400 RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 459
LP VA Q +A N+ A +N PFR+ + G M ++GR AAV+ + +
Sbjct: 306 AKLPQLGSVAQQAGKWAARNIHAELNGGTRQPFRYTDKGYMAMIGRG-AAVAELGRKRLQ 364
Query: 460 LDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVA 500
L G + + L +L L + +++ SWL + S A
Sbjct: 365 LQGLLAFLSWLLVHLALLSGFQQKVRALFSWLNGYVLHSPA 405
>gi|289435657|ref|YP_003465529.1| pyridine nucleotide-disulfide oxidoreductase [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|422419955|ref|ZP_16496910.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria seeligeri FSL N1-067]
gi|422423102|ref|ZP_16500055.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria seeligeri FSL S4-171]
gi|289171901|emb|CBH28447.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632114|gb|EFR99204.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria seeligeri FSL N1-067]
gi|313636509|gb|EFS02244.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase YumB
[Listeria seeligeri FSL S4-171]
Length = 403
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 169/396 (42%), Gaps = 66/396 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ Q + + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLRKLQ----QRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEK 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ + F +D V + + TV L + + YD+L+++
Sbjct: 59 LMYPLEKVVNESKTTFIQDTVVKINKDEK-------------TVTLNANGDISYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE---RLEEKGIVQAINVET 255
LG+E + + G E+AF +++E ++ R E + ++ R E I+ T
Sbjct: 106 LGSEAETFGISGLKEYAFTITSVESVKKI-RAHIEAQFAKWKTDPRDELLTIIVGGAGFT 164
Query: 256 TICPTGTPGNR--------------------EAALKVLSARKVQLVLGYFVRCIRRVGEF 295
I G NR EAA KVL +LV Y V + G
Sbjct: 165 GIEFLGELTNRIPELVKEYDVPREKVRIFCMEAAPKVLPQFDAKLV-DYGVGVLEDRG-V 222
Query: 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
E V +P A + S+ I E++ A ++W G +
Sbjct: 223 EFHVGKPVKEATADGVKYAESENEIREIKAAT------------IIWAAGVR-------- 262
Query: 356 PNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQA 413
N+ + A RG+ + + L V G+ I +GD S + + ++ RP P TAQ+A QQA
Sbjct: 263 GNSVIEASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANERPFPPTAQIAMQQA 322
Query: 414 DFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 448
D A NL + + L F + G + LG NDA
Sbjct: 323 DVAAINLAKLVKGETDLEDFVYHEKGTVCSLGDNDA 358
>gi|295695720|ref|YP_003588958.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Kyrpidia tusciae DSM 2912]
gi|295411322|gb|ADG05814.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Kyrpidia tusciae DSM 2912]
Length = 388
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 107/439 (24%), Positives = 174/439 (39%), Gaps = 113/439 (25%)
Query: 81 RICILGGGFGGLYTALRL--ESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
R+ +LG G+GGL AL+L E+ D + LV++ + LYE + E
Sbjct: 4 RVVVLGAGYGGLVAALKLAKETSAGSVD----ITLVNKYDYHQLVTQLYEPAAAAKRDTE 59
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ LLA ++F +D V + P + + V LE G + YD+LV++
Sbjct: 60 VRIPLKKLLAGKPIRFVEDVVTKIDPKEKV-------------VTLEGGEL-SYDYLVVA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG+E + +PG E+ ++++A L R + ER C
Sbjct: 106 LGSETEYFGIPGMKEYGMTLKSVDEA--------RLIRTHIER----------------C 141
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 318
P + L +V G + I VGE + +P + + N +
Sbjct: 142 FAEYPLDPRPELLTF------VVGGAGLTGIELVGEI--------ADWLPRLCEESNIPR 187
Query: 319 -----YILELQPAI-KGLE-------SQIFEADLVLWTVGSKPLLPHVEPPNNRLHD--- 362
Y +E P+I G E ++ +A V++ VGS P++ VEP L D
Sbjct: 188 EQVTLYNVEAMPSILPGFEPDLVAKAEEVLKAKGVIFKVGS-PIV-QVEPGVVHLKDGEV 245
Query: 363 ----------------------LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 400
RG+A+ +E L G+ ++ GD + + GR
Sbjct: 246 IQSRTIIWTGGVRGNQIVVEAGFETEPRGRAKVNEYLQAVGYDDVYMAGDCCFVLNEQGR 305
Query: 401 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 460
P P TAQ+A Q + NL A + RP PF + LG + LG DA
Sbjct: 306 PYPPTAQLAIQMGNSVAHNLAADLQGRPKTPFVPKILGTVASLGGRDAV----------- 354
Query: 461 DGPIGHSAR---KLAYLIR 476
G +G++ + ++AY I+
Sbjct: 355 -GKVGNNYKASGRVAYFIK 372
>gi|427704003|ref|YP_007047225.1| NADH dehydrogenase, FAD-containing subunit [Cyanobium gracile PCC
6307]
gi|427347171|gb|AFY29884.1| NADH dehydrogenase, FAD-containing subunit [Cyanobium gracile PCC
6307]
Length = 483
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 115/476 (24%), Positives = 182/476 (38%), Gaps = 98/476 (20%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K P + I+GGGF GL A RL + +V LVD+ +F+P+LY++ SG V
Sbjct: 18 KGWPHVVIVGGGFAGLKAAHRLAG------QPVRVTLVDKRNFNLFQPLLYQVASGLVSE 71
Query: 137 WEIAPRFADLLANTG-VQ-FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
++A LLA VQ + V L + + N + YD
Sbjct: 72 ADVATPLRRLLARAANVQVLLGEVVDLDAATREVVFNDRR---------------LRYDS 116
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELE------------------ 235
L+L+ G+ E A P LE A + R+ L+ LE
Sbjct: 117 LILATGSGSTYFGHEEWRELAPPMKILEHADEIRRRVLTALEEAEQTPDPERCRFLQSVV 176
Query: 236 -----------------------RRNFERLEEKGIVQAINVE--TTICPTGTPGNREAAL 270
RR+F +L+ G+ + + V+ + P +AA
Sbjct: 177 VVGGGPSGCELAGSINELMRHAARRDFRQLD-PGLCRVVLVDPGDRVLRAMDPSLSQAAG 235
Query: 271 KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 330
L +R V+LVLG V+ I G + K +G P+
Sbjct: 236 DYLVSRGVELVLGGRVQSIE-AGRLTVTFKSSPAGT-PS--------------------- 272
Query: 331 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 390
++ EA + W+ G + H+ ++ G+ + + GHP I +GD
Sbjct: 273 -ERVLEAATICWSAGVRA--SHLGKLLAERTGCAVDRGGRVVVEPDFSIAGHPEIRVVGD 329
Query: 391 -SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
S + G+PLP A A Q + +L A + R PFR+ + G M ++G A
Sbjct: 330 LCSYAHTADGQPLPGMAGPAVQMGGWVALDLLAQLGGRRQAPFRWFDFGSMAVIGPLCAV 389
Query: 450 VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQST 505
+ G+ + G +G LA+L +P +E+RL + WL A A L T
Sbjct: 390 AD---LRGLKVTGALGWLLWGLAHLAFMPANENRLTLLTKWLWMIATQQRASLLIT 442
>gi|114048517|ref|YP_739067.1| NADH dehydrogenase [Shewanella sp. MR-7]
gi|113889959|gb|ABI44010.1| NADH dehydrogenase [Shewanella sp. MR-7]
Length = 429
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 145/363 (39%), Gaps = 53/363 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D+S ++KP L+E+ G +D + D G ++ + ++ C D +
Sbjct: 34 VCLIDKSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGEIEQ-CDPDAKTI 92
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
+ G +LLE I EYD+LVL+LG GA + +L++A +K
Sbjct: 93 QLAAVYSDSGELLLEPRQI-EYDYLVLALGGVSNSFNTLGAEQHCIFLDSLDNANLFHQK 151
Query: 231 LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 290
L + + E E+ V I G G AA L + + ++
Sbjct: 152 LLDALLQLNETQEK--------VSIGIVGAGATGVELAA-----------ELHHVIESVK 192
Query: 291 RVGEFEASVKQPESGAI---PNIA----------ADKNSDKYILELQPAIK-------GL 330
G S + I P I A DK + L ++ G
Sbjct: 193 EYGYLNISKHHLDVHLIEASPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTRDGF 252
Query: 331 ESQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRI 385
+Q + EA L +W G V+ P LP+ R Q E D + VKGH I
Sbjct: 253 ITQDGDVIEAGLKVWAAG-------VKGPKAFQNFSKLPITPRNQVEVDACMRVKGHQDI 305
Query: 386 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
+ALGD + L SG+P+P AQ A Q AD N+ + + PF +++ G ++ L R
Sbjct: 306 YALGDCALLILESGQPVPPRAQAAAQMADTLYENIVNRLQGKAEKPFVYKDYGSLVSLSR 365
Query: 446 NDA 448
A
Sbjct: 366 FSA 368
>gi|254555447|ref|YP_003061864.1| NADH dehydrogenase [Lactobacillus plantarum JDM1]
gi|300766967|ref|ZP_07076880.1| NADH dehydrogenase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|448820031|ref|YP_007413193.1| NADH dehydrogenase [Lactobacillus plantarum ZJ316]
gi|254044374|gb|ACT61167.1| NADH dehydrogenase [Lactobacillus plantarum JDM1]
gi|300495505|gb|EFK30660.1| NADH dehydrogenase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|448273528|gb|AGE38047.1| NADH dehydrogenase [Lactobacillus plantarum ZJ316]
Length = 400
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 161/401 (40%), Gaps = 91/401 (22%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF 143
+LGGG+ G+ L+ + +D +++LVDQ+ K L+E+ +G + I +
Sbjct: 6 VLGGGYAGMRAVKFLQKSLPTED---EIILVDQTPTHTEKTNLHEVAAGTIAPDRITYQI 62
Query: 144 ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203
D++ VQF + VK + V E + YD+LVL+LG +
Sbjct: 63 PDIIGKR-VQFVQATVKSVDIEQK-------------QVTFEDHPEMTYDYLVLALGFQS 108
Query: 204 KLDVVPGAAEFAFP----------FSTLED---ACRVDRKLSELE--------------- 235
+ V GA E A P + LE+ A R + ++L+
Sbjct: 109 ETFGVAGADENALPMDDLATSQAVYEHLEERFKAYRTSKDKNDLKIAVCGAGFTGIELLG 168
Query: 236 --RRNFERLEEKGIVQAINVET-----TICPTGTPGNREAALKVLSARKVQLVLGYFVRC 288
+ RL+ K A + +I P T R+ ALK + V++ LG +
Sbjct: 169 ELTQTLPRLQAKYQTPAAKLVCLERMPSILPMFTQELRDYALKFMEKNNVEMRLGAVIEA 228
Query: 289 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 348
I+ GA+ ADKN + F A+ ++WTVG
Sbjct: 229 IK-------------PGAVVYSDADKNEHE----------------FTANTIIWTVGVSG 259
Query: 349 LLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATA 406
HV + D + R + L ++GHP +F +GD +A+ D S RP P TA
Sbjct: 260 --SHV------IADSGFDQRRNRVVVKPDLSLEGHPEVFIVGDVAAVMDPESNRPYPTTA 311
Query: 407 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 447
Q+A + A N+ A +++ F +++ G + L D
Sbjct: 312 QIALAAGEQAAKNIGALRHNQATATFHYESSGTVASLSDRD 352
>gi|212640224|ref|YP_002316744.1| NADH dehydrogenase, FAD-containing subunit [Anoxybacillus
flavithermus WK1]
gi|212561704|gb|ACJ34759.1| NADH dehydrogenase, FAD-containing subunit [Anoxybacillus
flavithermus WK1]
Length = 410
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 97/416 (23%), Positives = 169/416 (40%), Gaps = 101/416 (24%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP + +LG G+GGL T RL+ ++ ++ + LV++ + L+E +G +
Sbjct: 7 KKPNVVVLGAGYGGLMTVTRLQKMIGVNE--ASITLVNKHDYHYESTWLHEAAAGTLHHE 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ AD++ + V+F +D V+ + VLL++ + YD+LV+
Sbjct: 65 RVRYAIADVIDRSKVKFIQDTVEKINLEQK-------------QVLLQNHEPLTYDYLVV 111
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL--------SELERRNFERLE------ 243
+LG E + + G E+AF + + A ++ + +E E+R+ ERL
Sbjct: 112 ALGFESETFGIKGLKEYAFSIANVNAARQIREHIEYQFATYSTEEEKRD-ERLTIVVGGA 170
Query: 244 ------------------------EKGIVQAINVET--TICPTGTPGNREAALKVLSARK 277
+ V+ I VE T+ P P E A+ VL +
Sbjct: 171 GFTGIEFLGELVNRVPELCREYDVDPNKVRIICVEAAPTVLPGFDPELVEYAVNVLEKKG 230
Query: 278 VQLVLGYFVR-CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 336
V+ +G ++ C PE + + D + E++
Sbjct: 231 VEFKIGTAIKEC------------TPEGIIV-------SKDDQVEEIK------------ 259
Query: 337 ADLVLWTVGSKPLLPHVEPPNNRLHDLP--LNARGQAETDETLCVKGHPRIFALGDSS-A 393
A V+W G + +R+ D RG+ + D L GH +F +GD +
Sbjct: 260 AGTVVWAAGVR---------GSRVIDESGFEAMRGRVKVDPFLRAPGHEDVFVVGDCALI 310
Query: 394 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQNLGEMMILGRNDA 448
+ + + RP P TAQ+A QQ + NL I + L PF+ G + LG +DA
Sbjct: 311 INEETNRPYPPTAQIAMQQGEVCAKNLAVLIRGQGELQPFKPDLKGTVCSLGHDDA 366
>gi|271964603|ref|YP_003338799.1| cyclic nucleotide-regulated FAD-dependent pyridine
nucleotide-disulfide oxidoreductase [Streptosporangium
roseum DSM 43021]
gi|270507778|gb|ACZ86056.1| cyclic nucleotide-regulated FAD-dependent pyridine
nucleotide-disulphide oxidoreductase [Streptosporangium
roseum DSM 43021]
Length = 441
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 109/445 (24%), Positives = 181/445 (40%), Gaps = 81/445 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG+ G+Y ALRL+ + + + + V+ +D ++P L E +G V+A +
Sbjct: 6 RILIVGGGYVGMYVALRLQRKLRRGEARITVVNIDSY--MTYQPFLPEAAAGNVEARHVV 63
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMA-----CTHGGTVLLESGLIVEYDWL 195
+L + V +GV+ P+A C H G G +EYD L
Sbjct: 64 VSLRRVLNKC--EILNGWV--------VGVD-PVARTADLCLHQG-----PGRTLEYDIL 107
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSEL---ERRNFERLEEKGI---- 247
V + G+ + +PG AE F ++E+A + D L++L E + K +
Sbjct: 108 VFAPGSISRTLPIPGLAESGIGFKSVEEAIHLRDHVLAQLDLAESTTDRSVRAKALSFVF 167
Query: 248 -------VQAI----NVETTIC---PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
V+A+ ++ +C PT PG+ L++ R + VG
Sbjct: 168 VGAGYAGVEALAELEDMARDVCRYYPTVDPGDMR-----------WLLVEATDRILPEVG 216
Query: 294 EFEASVKQPESG--AIPNIAADKNSDKYILELQPAIKGL----ESQIFEADLVLWTVGSK 347
PE G + + + L A+ G + F+AD ++WT G K
Sbjct: 217 --------PEMGRWTLEQLRGRGIDVRLGTRLNSAVDGHIVLDDGTEFDADTLVWTAGVK 268
Query: 348 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPAT 405
P P LPL+ + + + L V+G P +F GD +A+ D + G
Sbjct: 269 P------NPLVHTSGLPLDDKSRVKASADLIVEGFPHVFTAGDCAAVPDLTKPGEMCAPN 322
Query: 406 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 465
AQ A +QA N+ A + R P+R G + LG + + G L G
Sbjct: 323 AQNAVRQARTLADNVVATLRGRARRPYRHAYAGSVATLGLHKGVAQ---IYGRKLRGLPA 379
Query: 466 HSARKLAYLIRLPTDEHRLKVGVSW 490
+ +L R+PT +++V W
Sbjct: 380 WFMHRTYHLSRIPTVNKKVRVLTDW 404
>gi|419858810|ref|ZP_14381469.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni DSM
20252 = AWRIB129]
gi|410497688|gb|EKP89158.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni DSM
20252 = AWRIB129]
Length = 390
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 103/430 (23%), Positives = 165/430 (38%), Gaps = 90/430 (20%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LG G+ GL R+ + +++L++++ L+E+ G +I+
Sbjct: 4 IVVLGAGYAGL----RVVRELVDHKANAKIVLINKNSYHYESTQLHEVAIGSKSPNDISL 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ N V F +D V + + V L+S V YD+LV LG
Sbjct: 60 NIRDVIGNQ-VDFIEDEVVKIDRQNK-------------KVELKSKSTVSYDYLVTCLGF 105
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
E + + GA EF P ++ A + L E R F+ ++ ++ +C G
Sbjct: 106 ESETFGIKGADEFGLPIIDIDTALVAKKHLEETLAR-FQSSHDEN-----DLHIAVCGAG 159
Query: 262 ----------------------TPGNR------EAALKVLSARKVQLVLGYFVRCIRRVG 293
P + EAA KVL +LV Y V ++ G
Sbjct: 160 FTSIEYIGELLHRLPDFVKRFNLPAEKIKIYCIEAAPKVLPMFDPKLV-DYAVNYLKNQG 218
Query: 294 -EF--EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350
EF E + + + GA+ I+ DK F A+ ++WT G K
Sbjct: 219 VEFYTETPITEVKKGAV--ISKDK-------------------AFNANTIIWTTGVKG-- 255
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
HV + R + L P F +GD SA+ GR P T Q++
Sbjct: 256 SHVINDSGYTQ-----KRNRVAVQNDLSSSDDPNEFIIGDVSAVPSPDGRFYPTTGQISV 310
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
QA A N+ A +N++ PF + +LG + LG + SF+ L G K
Sbjct: 311 AQATLAASNIIAKLNNQKTSPFNYHSLGTVCSLGPTNGVAELSFMGHWKLKG------HK 364
Query: 471 LAYLIRLPTD 480
+A L R+ D
Sbjct: 365 VAPLKRIVND 374
>gi|297624970|ref|YP_003706404.1| NADH dehydrogenase (ubiquinone) [Truepera radiovictrix DSM 17093]
gi|297166150|gb|ADI15861.1| NADH dehydrogenase (ubiquinone) [Truepera radiovictrix DSM 17093]
Length = 465
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 102/437 (23%), Positives = 180/437 (41%), Gaps = 60/437 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDA 136
K+PR+ I+G GF GLY A L + P +VL++DQ+ F+P++Y++ + ++
Sbjct: 6 KRPRVVIIGAGFAGLYAAKALR-------RDPVEVLVIDQNNYHTFQPLIYQVATAGLEP 58
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
++A N F + + GV+ G T+ L G +D+L+
Sbjct: 59 GDVA-------HNVRAIFHRQTNFAFRQATVTGVD-----WEGKTLELAGGAREAFDYLI 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFE-RLEEKGIVQAINVE 254
L+ GA VPG E AF +L +A + L +LER + + L ++G++ + V
Sbjct: 107 LAAGAVYNDFGVPGVQEHAFFLKSLTEAVNIRSHILRQLERASADPTLVDQGVLNIVIVG 166
Query: 255 ----------------TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
+ + P P A K++ + +L + R E
Sbjct: 167 GGPTGVEMAGALTELFSRVLPQDYPELDLAKAKIILVETMDHLLPPYSEASRTYAETVLR 226
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK--PLLPHVEPP 356
+ E + A + + +EL+ ++ ++W G + PL+ +
Sbjct: 227 ERGVELRLGSTLTAVRPHE---VELK------SGEVIPTQTLIWAAGVRGHPLVDALGVE 277
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
R H + +N L + G P FA GD + +D+SGR P A VA Q
Sbjct: 278 LERGHRIKVNP--------DLSLPGRPFAFAAGDLAGSKDASGRLHPQVAPVAIQHGKHI 329
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRND--AAVSPSFVEGVTLDGPIGHSARKLAYL 474
+ + +P F + + G M I+GRN A +S +F+ +G A +L
Sbjct: 330 ARTIRRQLRGQPTTAFSYFDKGSMAIIGRNAGVAELSRAFLGLRLRGL-LGWLAWLFIHL 388
Query: 475 IRLPTDEHRLKVGVSWL 491
I LP ++R +W+
Sbjct: 389 IYLPGYQNRFSAFFNWV 405
>gi|291295179|ref|YP_003506577.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Meiothermus ruber DSM 1279]
gi|290470138|gb|ADD27557.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Meiothermus ruber DSM 1279]
Length = 427
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 158/380 (41%), Gaps = 43/380 (11%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA- 140
+ +LG GF GL+ L + +V LVD++ +F+P+LY++ + ++A +IA
Sbjct: 6 VVVLGAGFAGLHAVRELSR-----EPGVRVTLVDRNNYHLFQPLLYQVATAGLEAPQIAF 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P A L + +F + + P VL G + YD+L++ G
Sbjct: 61 PIRAFLRKHKNARFLLGSAEGVDPR--------------ARVLWVEGRPITYDYLIVGTG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELER--RNFERLEEKGIVQAINVETTI 257
A +PG A + + L+DA ++ DR LS E R + K ++ + V
Sbjct: 107 ARTNDFGLPGVARYGYGLKNLDDAMKIRDRILSACEEAVRTPDPARRKALLTFVVVGGGP 166
Query: 258 CPTGTPGNREAALKVLSARKV-QLVLGYFVRCIRRVG-----EFEASVKQPESGAIPNIA 311
G + +++R L L F + G F S Q + +
Sbjct: 167 TGVELAGALGELRRHVASRDYPDLDLSEFRVVLIEAGPRLLEAFAPSSAQYAQRFLEKLG 226
Query: 312 ADKNSDKYILELQPAIKGLESQI-FEADLVLWTVG-SKPLLPHVEPPNNRLHDLPLNARG 369
+ + ++E+ P L S + V+W+ G + +LP + P ARG
Sbjct: 227 VELMLGEQVVEVTPNAVRLRSGLNLPCFTVVWSAGVTGQVLPGLTP-----------ARG 275
Query: 370 -QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
+ T L V +P I+ +GD + L GRP P A A QQ A N+ ++ +
Sbjct: 276 NRIATTPELYVPDYPSIYVVGDLNYLEYRDGRPHPQVAPAAMQQGALAARNILRELHGQE 335
Query: 429 LLPFRFQNLGEMMILGRNDA 448
PF+++ G M LGR+ A
Sbjct: 336 KRPFKYKEKGSMATLGRSHA 355
>gi|421468173|ref|ZP_15916736.1| pyridine nucleotide-disulfide oxidoreductase [Burkholderia
multivorans ATCC BAA-247]
gi|400232462|gb|EJO62077.1| pyridine nucleotide-disulfide oxidoreductase [Burkholderia
multivorans ATCC BAA-247]
Length = 452
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 100/391 (25%), Positives = 161/391 (41%), Gaps = 34/391 (8%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL+ A RL + + +V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLHLATRLGDTIGRRGHA-EVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + ++ + + + G + G +L L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALQRVDRAVRIATIGAVHDADGTEILPARTL--AYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
++G+ VPGAA A P L+ A RK + R E++ A V ++
Sbjct: 132 AVGSVTNFFGVPGAARHALPLENLDQAEDFRRKFLAACTKANHRAEQQPAQPAAPVSISV 191
Query: 258 CPTGTPGNREAA-------------LKVLSAR---KVQLVLGYFVRCIRRVGEFEASVKQ 301
G G AA K L A +++L+ G R + +A +
Sbjct: 192 IGAGATGVELAAALCHAVQQLTTYRFKALDAARDVRIRLIEG----APRILPALDARLSD 247
Query: 302 PESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--N 358
+ + D +D + E+ A+ + +D+ +W G V P
Sbjct: 248 KMHAQLRALNVDVLTDTRVAEVGADAVTIASGERLASDITIWAAG-------VAGPAILR 300
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAG 417
L + LN Q +TL P ++A GD +A + + LP AQVA QQA +
Sbjct: 301 ELDGIALNRSNQVIVTDTLQTPDDPHVYAFGDCAACPSNGASGCLPPRAQVAHQQAVYLS 360
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
I +P+ F F++ G ++ LG A
Sbjct: 361 QAFARRIAGKPVAGFTFRDAGTVVSLGHAGA 391
>gi|117921561|ref|YP_870753.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella sp. ANA-3]
gi|117613893|gb|ABK49347.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Shewanella sp. ANA-3]
Length = 429
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 145/363 (39%), Gaps = 53/363 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D+S ++KP L+E+ G +D + D G ++ + ++ C D +
Sbjct: 34 VCLIDKSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGEIEQ-CEPDAKTI 92
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
+ G +LLE I EYD+LVL+LG GA + +L++A +K
Sbjct: 93 QLAAVYSDSGELLLEPRQI-EYDYLVLALGGVSNSFNTLGAEKHCIFLDSLDNANLFHQK 151
Query: 231 LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 290
L + + E E+ V I G G AA L + + ++
Sbjct: 152 LLDALLQLNETQEK--------VSIGIVGAGATGVELAA-----------ELHHVIESVK 192
Query: 291 RVGEFEASVKQPESGAI---PNIA----------ADKNSDKYILELQPAIK-------GL 330
G S + I P I A DK + L ++ G
Sbjct: 193 EYGYLNISKHHLDVHLIEASPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTRDGF 252
Query: 331 ESQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRI 385
+Q + EA L +W G V+ P LP+ R Q E D + VKGH I
Sbjct: 253 ITQDGDVIEAGLKVWAAG-------VKGPKAFQNFSKLPITPRNQVEVDACMRVKGHQDI 305
Query: 386 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
+ALGD + L SG+P+P AQ A Q AD N+ + + PF +++ G ++ L R
Sbjct: 306 YALGDCALLILESGQPVPPRAQAAAQMADTLYENIVNRLQGKAEKPFVYKDYGSLVSLSR 365
Query: 446 NDA 448
A
Sbjct: 366 FSA 368
>gi|336312520|ref|ZP_08567469.1| NADH dehydrogenase [Shewanella sp. HN-41]
gi|335864026|gb|EGM69144.1| NADH dehydrogenase [Shewanella sp. HN-41]
Length = 421
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 144/371 (38%), Gaps = 53/371 (14%)
Query: 103 WQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL 162
W V L+D+S ++KP L+E+ G +D + D G ++ + ++
Sbjct: 18 WGGSDVVDVCLIDKSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGEIEQ- 76
Query: 163 CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLE 222
C D + + GG +LLE I EYD+LVL+LG GA E +LE
Sbjct: 77 CEPDAKIIQLAAVYSDGGELLLEPRQI-EYDYLVLALGGVSNSFNTLGAEEHCIFLDSLE 135
Query: 223 DACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 282
+A KL + + E E V I G G AA L
Sbjct: 136 NANLFHHKLLDALLQLNETQER--------VSIGIVGAGATGVELAA-----------EL 176
Query: 283 GYFVRCIRRVGEFEASVKQPESGAI---PNIA----------ADKNSDKYILELQPAIK- 328
+ + ++ G S + I P I A DK + L ++
Sbjct: 177 HHVIESVKEYGYLNISKHHLDVHLIEASPKILPQLPERVSARAQAVLDKIGIRLHIGVQV 236
Query: 329 ------GLESQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETL 377
G +Q + EA L +W G V+ P LP+ +R Q E D +
Sbjct: 237 KEVTRDGFITQDGDVIEAGLKVWAAG-------VKGPKAFQNFTKLPITSRNQVEVDACM 289
Query: 378 CVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNL 437
VKGH I+ALGD + L SG+ +P AQ A Q AD N+ + + F +++
Sbjct: 290 RVKGHQDIYALGDCALLILESGQAVPPRAQAAAQMADTLFSNIVNRLQGKSEKAFEYKDY 349
Query: 438 GEMMILGRNDA 448
G ++ L R A
Sbjct: 350 GSLVSLSRFSA 360
>gi|422295211|gb|EKU22510.1| NADH dehydrogenase [Nannochloropsis gaditana CCMP526]
Length = 333
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 88/183 (48%), Gaps = 33/183 (18%)
Query: 80 PRIC--ILGGGFGGLYTALRLESLVWQDDKKP---QVLLVDQSERFVFKPMLYELLSGEV 134
P IC I GLY+ALRL L P + LVD+ +RFVF P+LYEL G+
Sbjct: 67 PSICMSIESSSSKGLYSALRLSELSRPSRYAPPSIDITLVDRHDRFVFLPLLYELAMGDA 126
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL------ 188
+ E+APRF LLA+TG++F + V+ + D G + T + ES +
Sbjct: 127 NEEEVAPRFESLLASTGIRFVQGEVEAI---DLAGKCVQVQSQGEATEVSESAVEAPSSG 183
Query: 189 ---IVEYDWLVLSLGAEPKLDVVPGAAEF-------------AFPFSTLEDACRVDRKLS 232
+ YD LVL+LG+EP L P AA PF TL DA + R+L
Sbjct: 184 SSKSLAYDKLVLALGSEPML---PPAASLPLSEGSLSPSPSSVMPFYTLRDAHALRRQLM 240
Query: 233 ELE 235
++
Sbjct: 241 RID 243
>gi|377830894|ref|ZP_09813885.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus mucosae
LM1]
gi|377555342|gb|EHT17030.1| pyridine nucleotide-disulfide oxidoreductase [Lactobacillus mucosae
LM1]
Length = 401
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 101/396 (25%), Positives = 166/396 (41%), Gaps = 70/396 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+ GL T + L+ V K ++ LV+Q++ L+E+ +G V I+
Sbjct: 3 KIVILGAGYAGLKTVVELQKKVA---KTAEITLVEQNDYHYEATSLHEVAAGNVAPEHIS 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
++L + V+ KDRV + P V L + YD+ V++LG
Sbjct: 60 FGIREVL-SPAVKLIKDRVVKVDPD-------------AKQVELAEHAPLNYDYCVMALG 105
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
+ + GAAE + P + ++ A R+ L N + ++ + +++ +C
Sbjct: 106 FVSETFGIKGAAENSLPMANVDQAARIAHHL------NDQMMQYRADHNPDHLKIIVCGA 159
Query: 261 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE-ASVKQPESGAIPNIAA---DKNS 316
G G E A + ARK + +V E + A++K A P I DK
Sbjct: 160 GFTG-IELAGALYDARK----------RLAKVAEVDPAAIKIKMIDAAPRILPMFDDKMK 208
Query: 317 DKYI---------LELQPAIKGL----------ESQIFE--ADLVLWTVGSKPLLPHVEP 355
D I L+ Q AIK + + Q+ E A ++WT G
Sbjct: 209 DYAIKLMQKEQLTLQGQAAIKEIKPGAVVYQTKDEQLHEETAGTIIWTTGVS------GS 262
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPATAQVAFQQAD 414
P DLP RG+ + L + ++ LGD +A+ G RP P TAQ+A
Sbjct: 263 PVMAASDLP-QRRGRVMVTDHLTAPDYDDLYVLGDVAAVMPPDGKRPYPTTAQIALTMGI 321
Query: 415 FAGWNLWAAIN--DRPLLPFRFQNLGEMMILGRNDA 448
+A +L A + RP P+ + +LG + +G A
Sbjct: 322 YAAKDLAARVTGGQRP-GPYSYHSLGTVASMGNTHA 356
>gi|308179448|ref|YP_003923576.1| NADH dehydrogenase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380031360|ref|YP_004888351.1| NADH dehydrogenase [Lactobacillus plantarum WCFS1]
gi|308044939|gb|ADN97482.1| NADH dehydrogenase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|342240603|emb|CCC77837.1| NADH dehydrogenase [Lactobacillus plantarum WCFS1]
Length = 400
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 161/401 (40%), Gaps = 91/401 (22%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF 143
+LGGG+ G+ L+ + +D +++LVDQ+ K L+E+ +G + I +
Sbjct: 6 VLGGGYAGMRAVKFLQKSLPTED---EIILVDQTPTHTEKTNLHEVAAGTIAPDRITYQI 62
Query: 144 ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203
D++ VQF + VK + V E + YD+LVL+LG +
Sbjct: 63 PDIIGKR-VQFVQATVKNVDIEQK-------------QVTFEDHPEMTYDYLVLALGFQS 108
Query: 204 KLDVVPGAAEFAFP----------FSTLED---ACRVDRKLSELE--------------- 235
+ V GA E A P + LE+ A R + ++L+
Sbjct: 109 ETFGVAGADENALPMDDLATSQAVYEHLEERFKAYRTSKDKNDLKIAVCGAGFTGIELLG 168
Query: 236 --RRNFERLEEKGIVQAINVET-----TICPTGTPGNREAALKVLSARKVQLVLGYFVRC 288
+ RL+ K A + +I P T R+ ALK + V++ LG +
Sbjct: 169 ELTQTLPRLQAKYQTPAAKLVCLERMPSILPMFTQELRDYALKFMEKNNVEMRLGAVIEA 228
Query: 289 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 348
I+ GA+ ADKN + F A+ ++WTVG
Sbjct: 229 IK-------------PGAVVYSDADKNEHE----------------FTANTIIWTVGVSG 259
Query: 349 LLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATA 406
HV + D + R + L ++GHP +F +GD +A+ D S RP P TA
Sbjct: 260 --SHV------IADSGFDQRRNRVVVKPDLSLEGHPEVFIVGDVAAVMDPESNRPYPTTA 311
Query: 407 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 447
Q+A + A N+ A +++ F +++ G + L D
Sbjct: 312 QIALAAGEQAAKNIGALRHNQATATFHYESSGTVASLSDRD 352
>gi|310818374|ref|YP_003950732.1| NADH dehydrogenase [Stigmatella aurantiaca DW4/3-1]
gi|309391446|gb|ADO68905.1| NADH dehydrogenase [Stigmatella aurantiaca DW4/3-1]
Length = 476
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 166/392 (42%), Gaps = 60/392 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDA 136
K+ ++ I+G GFGGL AL+L+ K P V +VD+ +F+P+LY++ + +
Sbjct: 26 KRHQVVIVGAGFGGLQAALKLK-------KAPVDVTVVDRYNHHLFQPLLYQVATAVLSP 78
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EIA +L ++ LL + + + + GG + YD LV
Sbjct: 79 GEIAAPIRSVLRG------RNTTVLLAEAQSVDLRRKVLVCDGGDI--------AYDTLV 124
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE--RRNFERLEEKGIVQAINV 253
L+ GA P ++FA T++DA + +R L LE R + + ++ + + V
Sbjct: 125 LAAGATHSYFGHPEWSQFAPGLKTIDDARNIRERVLLALEAAERETDPVRQREWLTFVIV 184
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES-----GAIP 308
PTG L+ + + RRV +A V E A P
Sbjct: 185 GA--GPTGVE---------LAGALAHMTQHSLPKEFRRVDITQARVILLEGLPRVLTAYP 233
Query: 309 ---NIAADKNSDKYILELQPA-----IKGLESQIFE----ADLVLWTVGSKPLLPHVEPP 356
+ A ++ ++ ++++ + L Q+ E A VLW G P
Sbjct: 234 EELSTRARRDLERLGVDVRTGTMVTGVDELGVQVGETRIAARTVLWGAGV------AASP 287
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ +PL+ G+ + + TL V GH +F +GD ++++ G+P+P A A Q
Sbjct: 288 LAKTLGVPLDKAGRVKVEPTLAVPGHEDVFVIGDLASVQ-QDGKPVPGIAPAAMQMGKHV 346
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
N+ RPL PF + + G ++GR A
Sbjct: 347 AKNIRLRAEGRPLEPFHYLDKGSFAVIGRGSA 378
>gi|309790567|ref|ZP_07685122.1| AD-dependent pyridine nucleotide-disulfide oxidoreductase
[Oscillochloris trichoides DG-6]
gi|308227369|gb|EFO81042.1| AD-dependent pyridine nucleotide-disulfide oxidoreductase
[Oscillochloris trichoides DG6]
Length = 392
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 156/385 (40%), Gaps = 35/385 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVL-LVDQSERFVFKPMLYELLSGEVDAWEI 139
+I ILG G+GGL TA+ LE L+ V+ L+DQ+ L+ + D+
Sbjct: 2 KIVILGAGYGGLRTAMNLEKLLRAHQMTDTVITLIDQNPYHQLIQELHHTATDGSDSRAA 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
L+ ++F RV+ + P + V+L G + Y+ LV+ L
Sbjct: 62 IYEIDQLIRGRQIEFICGRVEAILPGEQ-------------AVVLNDGQRISYERLVIGL 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETTIC 258
G+ VPGA E P T DA + D +++ + + R ++ Q + + T I
Sbjct: 109 GSITDFHGVPGAPEHTLPLRTYNDAVAIRDHVIAQFKAASEMRDAKE---QRLALTTAII 165
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD- 317
G G + A + ++ G +R V + G N A++ D
Sbjct: 166 GGGYTGCQLAGEFAVWVDRLCRDTGAPRSEVRIALLDRHDVLLHQFGRWANDVAERVLDR 225
Query: 318 -KYILELQPAIKGLESQ--------IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 368
+ + L ++ +E Q + A ++W G + P LP +
Sbjct: 226 QRVSIYLNIDVEAVEPQLLRVSGNRVLRAGTIIWAAGVRA------PDLIAQAGLPTDKM 279
Query: 369 GQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPATAQVAFQQADFAGWNLWAAINDR 427
G+A D L V+ IF LGD +A+ G +PATA A +Q + L+ I R
Sbjct: 280 GRARVDRYLRVEDREDIFVLGDCAAIPAGLGDETVPATASYAMRQGEHLAEALFDEIQGR 339
Query: 428 PLLPFRFQNLGEMMILGRNDAAVSP 452
++ LGE++ LG +D +P
Sbjct: 340 AARAYQPLKLGELVSLGPDDGVGTP 364
>gi|167855733|ref|ZP_02478488.1| NADH dehydrogenase [Haemophilus parasuis 29755]
gi|167853130|gb|EDS24389.1| NADH dehydrogenase [Haemophilus parasuis 29755]
Length = 427
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 154/352 (43%), Gaps = 37/352 (10%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
++LVD++ ++KP+L+E+ +G +D A + N +F + + + P++ + V
Sbjct: 32 IILVDKNISHLWKPLLHEVATGSLDDGTDALSYRAHAKNHHFEFRQGTLTQVKPAEKIIV 91
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
P+ G ++ E ++ YD LVL++G+ PG AE + E A ++
Sbjct: 92 LAPIYDEAGELLVAERTIV--YDKLVLAIGSRSNDFNTPGVAEHCIFLDSSEQAKVFHKR 149
Query: 231 LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY--FVRC 288
+ EL + F EK V + G G E + ++ +A K GY
Sbjct: 150 MMELFLK-FSNNNEK------EVHIAVVGGGATG-IELSAELYNAVKHLNSYGYGKLDNT 201
Query: 289 IRRVGEFEASVK----QPESGAIPNIAADKNSDKYILELQPAIK----GLESQI---FEA 337
+V EA + PE + I + +L P I+ GL ++ F+A
Sbjct: 202 SLKVTLLEAGERLLPALPERVSASAIKELRALGVDVLTNTPVIRATAEGLVTKYDENFKA 261
Query: 338 DLVLWTVGSKPLLPHVEPP----NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 393
DL++W G K P + NR++ + + Q TDE ++ +GD +
Sbjct: 262 DLMVWAAGVKA--PEITKTFGFETNRINQIAIKDTLQTLTDEN--------VYVIGDCAF 311
Query: 394 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
L + G+P+P AQ A Q A G N+ A + ++PL F F + G ++ R
Sbjct: 312 LLQADGKPVPPRAQAAHQMATVCGKNILAQLENKPLKAFIFDDKGSLISFSR 363
>gi|402570158|ref|YP_006619502.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cepacia GG4]
gi|402251355|gb|AFQ51808.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia cepacia GG4]
Length = 452
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 163/384 (42%), Gaps = 28/384 (7%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL A RL V + + V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLQLATRLGDTVGRRGQA-DVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + ++ + + + G +L + L +YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALQRVDRAARTATIAAVQDADGTEILPQRAL--DYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
++G+ VPGAA A P L+ A RK + + E++ +A + +
Sbjct: 132 AVGSVTNFFNVPGAARHALPLENLDQAEDFRRKFLAACTKANHQAEQQPARRAAPICINV 191
Query: 258 CPTGTPGN------REAALKVLSARKVQLVLG--YFVRCI----RRVGEFEASVKQPESG 305
G G R A ++ + R LV +R I R + + +
Sbjct: 192 IGAGATGVELAAALRHAIQQLTTYRFKALVSARDVHIRLIEGGPRILPALDERLSTKMHA 251
Query: 306 AIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHD 362
+ + D +D + E+ A+ + +D+ +W G V P L D
Sbjct: 252 QLRTLNVDVLTDTRVAEVGADAVTTATGEPLASDITIWAAG-------VAGPAILRELGD 304
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSAL--RDSSGRPLPATAQVAFQQADFAGWNL 420
+ LN Q +TL P ++A GD +A D+SG LP AQVA QQA + G L
Sbjct: 305 IALNRSNQVIVTDTLQTPDDPHVYAFGDCAACPSADASG-ILPPRAQVAHQQAVYLGEAL 363
Query: 421 WAAINDRPLLPFRFQNLGEMMILG 444
+ +P+ F F++ G ++ LG
Sbjct: 364 ARRLAGKPVAGFTFRDAGTVVSLG 387
>gi|115373344|ref|ZP_01460643.1| NADH dehydrogenase [Stigmatella aurantiaca DW4/3-1]
gi|115369643|gb|EAU68579.1| NADH dehydrogenase [Stigmatella aurantiaca DW4/3-1]
Length = 456
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 166/392 (42%), Gaps = 60/392 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDA 136
K+ ++ I+G GFGGL AL+L+ K P V +VD+ +F+P+LY++ + +
Sbjct: 6 KRHQVVIVGAGFGGLQAALKLK-------KAPVDVTVVDRYNHHLFQPLLYQVATAVLSP 58
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EIA +L ++ LL + + + + GG + YD LV
Sbjct: 59 GEIAAPIRSVLRG------RNTTVLLAEAQSVDLRRKVLVCDGGDI--------AYDTLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE--RRNFERLEEKGIVQAINV 253
L+ GA P ++FA T++DA + +R L LE R + + ++ + + V
Sbjct: 105 LAAGATHSYFGHPEWSQFAPGLKTIDDARNIRERVLLALEAAERETDPVRQREWLTFVIV 164
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES-----GAIP 308
PTG L+ + + RRV +A V E A P
Sbjct: 165 GA--GPTGVE---------LAGALAHMTQHSLPKEFRRVDITQARVILLEGLPRVLTAYP 213
Query: 309 ---NIAADKNSDKYILELQPA-----IKGLESQIFE----ADLVLWTVGSKPLLPHVEPP 356
+ A ++ ++ ++++ + L Q+ E A VLW G P
Sbjct: 214 EELSTRARRDLERLGVDVRTGTMVTGVDELGVQVGETRIAARTVLWGAGV------AASP 267
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ +PL+ G+ + + TL V GH +F +GD ++++ G+P+P A A Q
Sbjct: 268 LAKTLGVPLDKAGRVKVEPTLAVPGHEDVFVIGDLASVQ-QDGKPVPGIAPAAMQMGKHV 326
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
N+ RPL PF + + G ++GR A
Sbjct: 327 AKNIRLRAEGRPLEPFHYLDKGSFAVIGRGSA 358
>gi|187922128|ref|YP_001893770.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia phytofirmans PsJN]
gi|187713322|gb|ACD14546.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia phytofirmans PsJN]
Length = 439
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 107/443 (24%), Positives = 176/443 (39%), Gaps = 65/443 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ + I+G GFGG+ A +L + V ++D+ +F+P+LY++ +
Sbjct: 7 NRHHVVIIGAGFGGIEVANQLAG------TEVDVTIIDRRNHHLFQPLLYQVAGASLSTS 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHG-----GTVLLESGLIVEY 192
EIA L F++R + VN MA G V+L +G Y
Sbjct: 61 EIAWPIRYL--------FRNRPE---------VNTLMAEVEGVDQDAREVILNNGSRQSY 103
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAI 251
D LVL+ GA FA TLEDA + R L+ E ER + Q
Sbjct: 104 DTLVLATGATHAYFGHDEWEPFAPGLKTLEDATTIRGRILAAFE--EAERTSDP--QQRA 159
Query: 252 NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG------ 305
++T + G P E L+ +L R R + + V E+G
Sbjct: 160 ALQTFVIIGGGPTGVE-----LAGTIAELARDTLARDFRSIDPSTSRVVLIEAGQRLLSV 214
Query: 306 ------AIPNIAADKNSDKYILELQPAIKGLESQIF-----EADLVLWTVGSKPLLPHVE 354
A A +K + +L E ++ A ++W G +
Sbjct: 215 FPEDLSAYTRQALEKLGVEVVLGTPVTGCSAEGVVYGGTPLSARTIVWAAGVQ------A 268
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
P R + G+ L V GHP IFA+GD+++ G+P+P A A QQ
Sbjct: 269 SPAARWLSATSDRAGRVVVGPDLTVAGHPEIFAIGDTASCTMPDGKPVPGIAPAAKQQGK 328
Query: 415 FAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
+ + + +P+ PF++++ G + +GR+ A + V+ L G KLA+
Sbjct: 329 YVASLIGRRLKGKPVDGPFKYRHQGNLATIGRSLAVIDMGRVK---LRGAFAWWIWKLAH 385
Query: 474 LIRLPTDEHRLKVGVSWLTKSAI 496
+ L ++RL V +SW+ +I
Sbjct: 386 IYFLIGTQNRLSVALSWVWNHSI 408
>gi|385210243|ref|ZP_10037111.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. Ch1-1]
gi|385182581|gb|EIF31857.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. Ch1-1]
Length = 435
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 109/443 (24%), Positives = 180/443 (40%), Gaps = 63/443 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K + + I+G GFGG+ A +L + + V ++D+ +F+P+LY++ +
Sbjct: 6 KNRHHVVIIGAGFGGIEVANQLAGV------EVDVTIIDRRNHHLFQPLLYQVAGASLST 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHG-----GTVLLESGLIVE 191
EIA L F++R + VN MA G V+L +G+
Sbjct: 60 SEIAWPIRYL--------FRNRPE---------VNTLMAEVEGIDQDARQVILNNGMRQT 102
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQA 250
YD LVL+ GA FA TLEDA + R L+ E ER + Q
Sbjct: 103 YDTLVLATGATHAYFGHDEWGAFAPGLKTLEDATTIRGRILAAFE--EAERTSDP--QQR 158
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
++T + G P E L+ +L R R + + V E+G
Sbjct: 159 AALQTFVIIGGGPTGVE-----LAGTIAELARDTLARDFRSIDPSTSRVVLIEAGPRLLS 213
Query: 311 AADKNSDKYILELQPAIKGLESQIF--------EADLVLWTVGSKPLLPHV--------E 354
K+ Y + A++ L ++ AD V++ G KPL
Sbjct: 214 VFPKDLSAYTRQ---ALEKLGVEVVLGTPVTECSADGVVY--GGKPLSAKTIVWAAGVQA 268
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
P R + G+ L V G P +FA+GD+++ + G+P+P A A QQ
Sbjct: 269 SPAARWLGAASDRAGRVVVGPDLTVAGRPEVFAIGDTASCTMADGKPVPGIAPAAKQQGK 328
Query: 415 FAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
+ + + +P PF++++ G + +GR+ A + V+ L G KLA+
Sbjct: 329 YVANLIGRRLKGKPADGPFKYRHQGNLATIGRSLAVIDMGRVK---LRGAFAWWIWKLAH 385
Query: 474 LIRLPTDEHRLKVGVSWLTKSAI 496
+ L +RL V +SW+ +I
Sbjct: 386 IYFLIGTRNRLSVALSWVWNHSI 408
>gi|166364928|ref|YP_001657201.1| type 2 NADH dehydrogenase [Microcystis aeruginosa NIES-843]
gi|166087301|dbj|BAG02009.1| type 2 NADH dehydrogenase [Microcystis aeruginosa NIES-843]
Length = 458
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 100/447 (22%), Positives = 177/447 (39%), Gaps = 76/447 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+I+ P L + D + P G V+L+ + YD L
Sbjct: 57 ADISSPLRLILRGHENTDILLDHAIDIDPVK-------------GEVILKDHPPIAYDQL 103
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE- 254
V++ G +A T+EDA + R++ FE+ E++ I+ E
Sbjct: 104 VIATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRI----YLAFEKAEKE-----IDAEK 154
Query: 255 -----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG---- 305
T + G P E L+ ++ G ++ EA + E
Sbjct: 155 RQALLTFVIVGGGPTGVE-----LAGAIAEIAHGALRSDFHQINPTEAKILLLEGMDRVL 209
Query: 306 --AIPNIAADKNSDKYILELQPAIKGLESQIFE---------------ADLVLWTVGSKP 348
P+++A + L + + + I E A+ +LW G K
Sbjct: 210 PPYSPDLSAKAAASLIKLGVTVQTNSIVTNIVEGCVSVRQGEKTTEIAAETILWAAGVKA 269
Query: 349 -----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 403
+L N L+ G+ + L + G+ IF +GD + +PLP
Sbjct: 270 SRMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYANIFVIGDLANFAHQGDKPLP 322
Query: 404 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGP 463
A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+ G
Sbjct: 323 GIAPVAMQEGEYLANLLISRLKGQTIQPFHYIDRGSLAVIGQNAAVVDLGFVK---FSGF 379
Query: 464 IGHSARKLAYLIRLPTDEHRLKVGVSW 490
I A++ L +++L V V W
Sbjct: 380 IAWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|425457773|ref|ZP_18837471.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9807]
gi|389800798|emb|CCI19956.1| Type 2 NADH dehydrogenase [Microcystis aeruginosa PCC 9807]
Length = 446
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 102/446 (22%), Positives = 179/446 (40%), Gaps = 74/446 (16%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I+ +L D +L DH P+ G V+LE + YD LV
Sbjct: 57 ADISSPLRLILRG------HDNTDILL--DHAIDIDPVK----GEVILEDHPPIAYDQLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE-- 254
++ G +A T+EDA + R++ FE+ E++ I+ E
Sbjct: 105 IATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRIY----LAFEKAEKE-----IDAEKR 155
Query: 255 ----TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG----- 305
T + G P E L+ ++ G ++ EA + E
Sbjct: 156 QALLTFVIVGGGPTGVE-----LAGAIAEIAHGALRSDFHQINPTEAKILLLEGMDRVLP 210
Query: 306 -AIPNIAADKNSDKYILELQPAIKGLESQIFE---------------ADLVLWTVGSKP- 348
P+++A + L + + + I E A+ +LW G K
Sbjct: 211 PYSPDLSAKAAASLTKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETILWAAGVKAS 270
Query: 349 ----LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 404
+L N L+ G+ + L + G+ IF +GD + +PL
Sbjct: 271 RMGRILAERTGVN-------LDRVGRVIVEPDLSIAGYANIFVIGDLANFAHQGDKPLAG 323
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 464
A VA Q+ ++ L + + + + PF + + G + ++G+N A V FV+ G I
Sbjct: 324 IAPVAMQEGEYLANLLISRLKGQTIQPFHYIDRGSLAVIGQNAAVVDLGFVK---FSGFI 380
Query: 465 GHSARKLAYLIRLPTDEHRLKVGVSW 490
A++ L +++L V V W
Sbjct: 381 AWLVWVWAHIYYLIEFDNKLVVMVQW 406
>gi|33864073|ref|NP_895633.1| NAD binding site:FAD-dependent pyridine nucleotide-disulfide
[Prochlorococcus marinus str. MIT 9313]
gi|33635657|emb|CAE21981.1| NADH dehydrogenase [Prochlorococcus marinus str. MIT 9313]
Length = 503
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 101/439 (23%), Positives = 174/439 (39%), Gaps = 56/439 (12%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + I+GGGF G+ L + + +V L+D+ +F+P+LY++ +G V
Sbjct: 18 RRAPHVVIIGGGFAGVRACKALA------NTEVRVTLIDKRNFNLFQPLLYQVATGLVSK 71
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A L+ VQ V L P D ++ + + YD+L
Sbjct: 72 GDVATPLRQLIGRQFNVQVLLGEVTQLNPQDKQ--------------IVFNNKSLSYDYL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
VL+ G+ FA P LE A + R+L + E+ + Q +
Sbjct: 118 VLATGSGSTYFGHEEWRSFAPPMKILEHAEEIRRRLL-MAMEQAEQTPDPNARQFLQ-RV 175
Query: 256 TICPTGTPGNREAA-------------LKVLSARKVQLVL-GYFVRCIRRVGEFEASVKQ 301
I G G A K L+ + ++ L VR +R + E + +
Sbjct: 176 VIVGAGPTGCEMAGAVSELMRNAMRREFKQLNPDQTKIYLVDPGVRVLRAMPEM---LSK 232
Query: 302 PESGAIPNIAADKNSDKYILELQPAIKGLES----QIFEADLVLWTVGSKPLLPHVEPPN 357
+ ++ + + +QP + + Q +A V+WT G +P H+
Sbjct: 233 SARTTLESLGVEIVFKGRVQSMQPGEVMISTPNGDQCIQAATVIWTAGVRP--SHL---G 287
Query: 358 NRLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR-PLPATAQVAFQQA 413
L D L+ G+ + V GHP I +GD + R ++ + PLP A A Q
Sbjct: 288 RNLADSIGCELDKGGRVVVEPDFSVAGHPEIRVVGDLCSYRHTTNQNPLPGMAGPATQAG 347
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
F G ++ A ++ F + + G M +L R A + G G IG LA+
Sbjct: 348 GFVGKDIAALVSGSSRPTFNWFDFGSMAVLDRVAAVAD---LRGFKFSGGIGWMCWALAH 404
Query: 474 LIRLPTDEHRLKVGVSWLT 492
L +P E+R+ + WL
Sbjct: 405 LAFMPNPENRITLLFKWLV 423
>gi|418273938|ref|ZP_12889520.1| NADH dehydrogenase [Lactobacillus plantarum subsp. plantarum NC8]
gi|376010644|gb|EHS83969.1| NADH dehydrogenase [Lactobacillus plantarum subsp. plantarum NC8]
Length = 400
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 161/401 (40%), Gaps = 91/401 (22%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF 143
+LGGG+ G+ L+ + +D +++LVDQ+ K L+E+ +G + I +
Sbjct: 6 VLGGGYAGMRAVKFLQKSLPTED---EIILVDQTPTHTEKTNLHEVAAGTIAPDRITYQI 62
Query: 144 ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203
D++ VQF + VK + V E + YD+LVL+LG +
Sbjct: 63 PDIIGKR-VQFVQATVKNVDIEQK-------------QVTFEDHPEMTYDYLVLALGFQS 108
Query: 204 KLDVVPGAAEFAFP----------FSTLED---ACRVDRKLSELE--------------- 235
+ V GA E A P + LE+ A R + ++L+
Sbjct: 109 ETFGVAGADENALPMDDLATSQAVYEHLEERFKAYRASKDKNDLKIAVCGAGFTGIELLG 168
Query: 236 --RRNFERLEEKGIVQAINVET-----TICPTGTPGNREAALKVLSARKVQLVLGYFVRC 288
+ RL+ K A + +I P T R+ ALK + V++ LG +
Sbjct: 169 ELTQTLPRLQAKYQTPAAKLVCLERMPSILPMFTQELRDYALKFMEKNNVEMRLGAVIEA 228
Query: 289 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 348
I+ GA+ ADKN + F A+ ++WTVG
Sbjct: 229 IK-------------PGAVVYSDADKNEHE----------------FTANTIIWTVGVSG 259
Query: 349 LLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATA 406
HV + D + R + L ++GHP +F +GD +A+ D S RP P TA
Sbjct: 260 --SHV------IADSGFDQRRNRVVVKPDLSLEGHPEVFIVGDVAAVMDPESNRPYPTTA 311
Query: 407 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 447
Q+A + A N+ A +++ F +++ G + L D
Sbjct: 312 QIALAAGEQAAKNIGALRHNQATATFHYESSGTVASLSDRD 352
>gi|119774073|ref|YP_926813.1| NADH dehydrogenase [Shewanella amazonensis SB2B]
gi|119766573|gb|ABL99143.1| NADH dehydrogenase [Shewanella amazonensis SB2B]
Length = 429
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 148/366 (40%), Gaps = 53/366 (14%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
K +LL+D+S ++KP L+E+ G +D + D G ++ + ++ L P
Sbjct: 31 KADILLIDRSPIHIWKPKLHEVAVGAIDQSIEGLLYRDHGLKNGYRYQRGSLEALDPDAK 90
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
A + LL +EYD+LVL+LG PGA L++A +
Sbjct: 91 --TIQLSALYNERQELLMGPRTIEYDYLVLALGGVSNSFNTPGAESHCIFLDNLQNAEQF 148
Query: 228 DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 287
R+L + L+E +I I G G AA L + V
Sbjct: 149 HRQLLD----GLMLLDETQSRLSIG----IVGAGATGVELAA-----------ELHHVVE 189
Query: 288 CIRRVGEFEASVKQPESGAI---PNI----------AADKNSDKYILELQPAIK------ 328
+R G S + + I P I A DK + L ++
Sbjct: 190 SVREFGYQNISKQHLDIHLIEAAPKILPQLPDRVSGRAQAVLDKIGIHLHLGVQVKEVTK 249
Query: 329 -GLESQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGH 382
G +Q + AD+ +W G V+ PN + L LP+ R Q E D + VKGH
Sbjct: 250 EGFTTQDGNLIRADIRVWAAG-------VKGPNVFSDLSKLPITPRNQVEVDACMRVKGH 302
Query: 383 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 442
I+ALGD + L + G+P+P AQ A Q A+ N+ + + PF +++ G ++
Sbjct: 303 TDIYALGDCAQLILADGKPVPPRAQAASQMAETLYHNILNRLAGQAEAPFEYRDYGSLVS 362
Query: 443 LGRNDA 448
L R A
Sbjct: 363 LSRFSA 368
>gi|385206453|ref|ZP_10033323.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. Ch1-1]
gi|385186344|gb|EIF35618.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. Ch1-1]
Length = 449
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 158/372 (42%), Gaps = 48/372 (12%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV LVD++ ++KP+L+E+ +G +D + +A G +F + + L ++
Sbjct: 34 RAQVTLVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELTGLDRANR 93
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
G + G +L E L EYD L++++G+ V GA+EF+ T+ A R
Sbjct: 94 RLTLGTVLDDDGAELLPEREL--EYDTLIIAIGSTTAFFGVKGASEFSLALDTVSQAERF 151
Query: 228 DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKV-----------LSAR 276
++L R ++ E VE+ GTP E ++V LSA
Sbjct: 152 RKRLIAACMRAEHQVHEP-------VESA---PGTPSTDEPRIQVAIVGGGATGVELSAE 201
Query: 277 ---KVQLVLGYFVRCI---------------RRVGEFEASVKQPESGAIPNIAADKNSDK 318
Q++ Y + + R + + V + + + + +
Sbjct: 202 LRNTAQVLSAYGLHKLDPRHDVGIVLIEAGPRILPALQERVSTATAELLTKLGVKLMTSE 261
Query: 319 YILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETL 377
+ E+ P I+ + ADL +W G K P + + L LP+N GQ TL
Sbjct: 262 TVAEVAPGVIRTASGKTVRADLTVWAAGIKA--PAIL---SELDGLPVNRLGQLVVRRTL 316
Query: 378 CVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 436
+ IFALGD +A + R +P AQ A QQA F L A ++ RPL F +++
Sbjct: 317 QTEIDDNIFALGDCAACPWPGNERNVPPRAQAAHQQASFLMKALTARLDGRPLPEFTYRD 376
Query: 437 LGEMMILGRNDA 448
G ++ LG A
Sbjct: 377 FGSLVSLGHFSA 388
>gi|116491794|ref|YP_811338.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni PSU-1]
gi|421190401|ref|ZP_15647703.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB422]
gi|116092519|gb|ABJ57673.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni PSU-1]
gi|399970304|gb|EJO04609.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB422]
Length = 390
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 103/430 (23%), Positives = 165/430 (38%), Gaps = 90/430 (20%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LG G+ GL R+ + +++L++++ L+E+ G +I+
Sbjct: 4 IVVLGAGYAGL----RVVRELVDHKANAKIVLINKNSYHYESTQLHEVAIGSKSPNDISL 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ N V F +D V + + V L+S V YD+LV LG
Sbjct: 60 NIRDVIGNQ-VDFIEDEVVKIDRQNK-------------KVELKSKSTVSYDYLVTCLGF 105
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
E + + GA EF P ++ A + L E R F+ ++ ++ +C G
Sbjct: 106 ESETFGIKGADEFGLPIIDIDTALVAKKHLEETLAR-FQSSHDEN-----DLHIAVCGAG 159
Query: 262 ----------------------TPGNR------EAALKVLSARKVQLVLGYFVRCIRRVG 293
P + EAA KVL +LV Y V ++ G
Sbjct: 160 FTSIEYIGELLHRLPDFVKRFNLPAEKIKIYCIEAAPKVLPMFDPKLV-DYAVNYLKNQG 218
Query: 294 -EF--EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350
EF E + + + GA+ I+ DK F A+ ++WT G K
Sbjct: 219 VEFYTETPITEVKKGAV--ISKDK-------------------AFNANTIIWTTGVKG-- 255
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 410
HV + R + L P F +GD SA+ GR P T Q++
Sbjct: 256 SHVINDSGYTQ-----KRNRVAVQNDLSSSDDPNEFIIGDVSAVPSPDGRFYPTTGQISV 310
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
QA A N+ A +N++ PF + +LG + LG + SF+ L G K
Sbjct: 311 AQATLAASNIIAKLNNQKTSPFTYHSLGTVCSLGPTNGVAELSFMGHWKLKG------HK 364
Query: 471 LAYLIRLPTD 480
+A L R+ D
Sbjct: 365 VAPLKRIVND 374
>gi|221210591|ref|ZP_03583571.1| NADH dehydrogenase [Burkholderia multivorans CGD1]
gi|221169547|gb|EEE02014.1| NADH dehydrogenase [Burkholderia multivorans CGD1]
Length = 452
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 160/392 (40%), Gaps = 36/392 (9%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL+ A RL + + V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLHLATRLGDTIGRRGHA-GVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + ++ + + + G + G +L L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALQRVDRAARIATIGAVHDADGTEILPARTL--AYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
++G+ VPGAA A P L+ A RK + R E++ A V ++
Sbjct: 132 AVGSVTNFFGVPGAARHALPLENLDQAEDFRRKFLAACTKANHRAEQQPAQPAAPVSISV 191
Query: 258 CPTGTPG-NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 316
G G AAL+ VQ + Y + + + + + +P + A + S
Sbjct: 192 IGAGATGVELAAALR----HAVQQLTTYRFKALDGARDVRIRLIEGAPRILPALDA-RLS 246
Query: 317 DKYILELQP-----------------AIKGLESQIFEADLVLWTVGSKPLLPHVEPPN-- 357
DK +L+ A+ + +D+ +W G V P
Sbjct: 247 DKMHAQLRALNVEVLTDTRVAEVGADAVTIASGERLASDITIWAAG-------VAGPAIL 299
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFA 416
L + LN Q +TL P ++A GD +A D + LP AQVA QQA +
Sbjct: 300 RELDGIALNRSNQVIVTDTLQTPDDPHVYAFGDCAACPSDGASGCLPPRAQVAHQQAVYL 359
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
I +P+ F F++ G ++ LG A
Sbjct: 360 SQAFARRIAGKPVAGFTFRDAGTVVSLGHAGA 391
>gi|134095227|ref|YP_001100302.1| NADH dehydrogenase transmembrane protein [Herminiimonas
arsenicoxydans]
gi|133739130|emb|CAL62179.1| NADH dehydrogenase [Herminiimonas arsenicoxydans]
Length = 435
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 110/443 (24%), Positives = 181/443 (40%), Gaps = 63/443 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K + + I+G GFGG+ A +L + + V ++D+ +F+P+LY++ +
Sbjct: 6 KNRHHVVIIGAGFGGIEVANQLAGV------EVDVTIIDRRNHHLFQPLLYQVAGASLST 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHG-----GTVLLESGLIVE 191
EIA L F++R + VN MA G V+L +G+
Sbjct: 60 SEIAWPIRYL--------FRNRPE---------VNTLMAEVEGIDQDARQVILNNGMRQT 102
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQA 250
YD LVL+ GA FA TLEDA + R L+ E ER + Q
Sbjct: 103 YDTLVLATGATHAYFGHDEWGAFAPGLKTLEDATTIRGRILAAFE--EAERTSDP--QQR 158
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
++T + G P E L+ +L R R + + V E+G P +
Sbjct: 159 AALQTFVIIGGGPTGVE-----LAGTIAELARDTLARDFRSIDPSTSRVVLIEAG--PRL 211
Query: 311 AADKNSDKYILELQPAIKGLESQIF--------EADLVLWTVGSKPLLPHV--------E 354
+ D Q A++ L ++ AD V++ G KPL
Sbjct: 212 LSVFPEDLSAYTRQ-ALEKLGVEVVLGTPVTECSADGVVY--GGKPLSAKTIVWAAGVQA 268
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
P R + G+ L V G P +FA+GD+++ + G+P+P A A QQ
Sbjct: 269 SPAARWLGAASDRAGRVVVGPDLTVAGRPEVFAIGDTASCTMADGKPVPGIAPAAKQQGK 328
Query: 415 FAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
+ + + +P PF++++ G + +GR+ A + V+ L G KLA+
Sbjct: 329 YVANLIGRRLKGKPADGPFKYRHQGNLATIGRSLAVIDMGRVK---LRGAFAWWIWKLAH 385
Query: 474 LIRLPTDEHRLKVGVSWLTKSAI 496
+ L +RL V +SW+ +I
Sbjct: 386 IYFLIGTRNRLSVALSWVWNHSI 408
>gi|406664971|ref|ZP_11072745.1| NADH dehydrogenase-like protein yjlD [Bacillus isronensis B3W22]
gi|405386897|gb|EKB46322.1| NADH dehydrogenase-like protein yjlD [Bacillus isronensis B3W22]
Length = 395
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/430 (23%), Positives = 177/430 (41%), Gaps = 80/430 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG GF G+ A + +D+ + + +V+Q L+ L G + +A
Sbjct: 5 EIVILGAGFAGVLAAQTARKYLNKDEAR--ITVVNQFPTHQIITELHRLAGGTIAEGAVA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ + +V V+L +G V+YD LV++LG
Sbjct: 63 LPLEKIFKGYDINLEIAKVNSFDVESK-------------NVVLSNGKTVQYDTLVVALG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ +PG E +F ++++A + R+ E + + +++ + TI
Sbjct: 110 SQTGFFGIPGLEENSFVLKSVDEANAI-REHIEARIKAYATTKDEA-------DATIVIG 161
Query: 261 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVG-EFE-ASVKQPESGAIPNIA------- 311
G + V ++ +F + + G +FE +K E+G P I
Sbjct: 162 GG--------GLTGVELVGEIVDHFPKVAEKYGVKFEDLKIKLVEAG--PKILPVFPENL 211
Query: 312 ---ADKNSDKYILELQPA--IKGLESQIFE--------ADLVLWTVGSKPLLPHVEPPNN 358
A K+ K +E + + G+E + + A+ ++WT G PL
Sbjct: 212 IDRATKSLSKRGVEFITSTPVTGVEGNVIQLKDREPIVANTLVWTGGVAPL--------- 262
Query: 359 RLHDLPLNA-------RGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPA-TAQVA 409
PL A RG+A ++ L HP +F +GD+SA + G RP A TAQVA
Sbjct: 263 -----PLVAESGLAADRGKATINDFLQSTSHPEVFVIGDASAHIPNPGDRPTYAPTAQVA 317
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND--AAVSPSFVEGVTLDGPIGHS 467
+QQ + AG+N++A I L F+F N G + LGR D A V + + V L +
Sbjct: 318 WQQGEIAGYNIFAQIKGADLKEFKFTNSGTLGSLGRKDGIATVGANNTQLVGLPASLMKE 377
Query: 468 ARKLAYLIRL 477
A + Y+ +
Sbjct: 378 ASNIRYMTHI 387
>gi|323529238|ref|YP_004231390.1| NADH dehydrogenase [Burkholderia sp. CCGE1001]
gi|407710078|ref|YP_006793942.1| NADH dehydrogenase [Burkholderia phenoliruptrix BR3459a]
gi|323386240|gb|ADX58330.1| NADH dehydrogenase [Burkholderia sp. CCGE1001]
gi|407238761|gb|AFT88959.1| NADH dehydrogenase [Burkholderia phenoliruptrix BR3459a]
Length = 448
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 157/364 (43%), Gaps = 32/364 (8%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV LVD++ ++KP+L+E+ +G +D + +A G +F + + L +
Sbjct: 33 RAQVTLVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELTGLDRASR 92
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
GP+ G +L E L EYD LV+++G+ V GA EF+ T+ A R
Sbjct: 93 RLTLGPVLDDDGAELLPERQL--EYDTLVIAIGSTTAFFGVKGAPEFSLALDTVSQAERF 150
Query: 228 DRKL----SELERRNFERLEE---KGIVQAINVETTICPTGTPGNREAA-----LKVLSA 275
++L E + E +E ++ I G G +A +VLSA
Sbjct: 151 RKRLIAACMRAEHQAHEPVESGPGTSPSSEPRIQVAIVGGGATGVELSAELRNTAQVLSA 210
Query: 276 ---------RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA 326
V +VL R + + V + + + + + + E+ P
Sbjct: 211 YGLHKLDPRHDVGIVL--IEAGPRILPALQERVSTATAELLTKLGVKLMTSETVAEVAPG 268
Query: 327 -IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 385
I+ + ADL +W G + P + ++L LP+N GQ TL + +
Sbjct: 269 IIRTASGKTVRADLTVWAAGIRA--PAIL---SQLDGLPVNRLGQLNVRRTLQTEIDDNV 323
Query: 386 FALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
FALGD +A + + +P AQ A QQA F L A +++RPL F +++ G ++ LG
Sbjct: 324 FALGDCAACPWPGNEKNVPPRAQAAHQQASFLLKALAARLDNRPLPEFTYRDFGSLVSLG 383
Query: 445 RNDA 448
A
Sbjct: 384 HFSA 387
>gi|421192949|ref|ZP_15650201.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB553]
gi|399973359|gb|EJO07534.1| NADH dehydrogenase, FAD-containing subunit [Oenococcus oeni
AWRIB553]
Length = 390
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/405 (23%), Positives = 163/405 (40%), Gaps = 40/405 (9%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I +LG G+ GL R+ + +++L++++ L+E+ G +I+
Sbjct: 4 IVVLGAGYAGL----RVVRELVDHKANAKIVLINKNSYHYESTQLHEVAIGSKSPNDISL 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ N V F +D V + + V L+S V YD+LV LG
Sbjct: 60 NIRDVIGNQ-VDFIEDEVVKIDRQNK-------------KVELKSKSTVSYDYLVTCLGF 105
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE--TTICP 259
E + + GA EF P ++ A + L E R +E + A+ T+I
Sbjct: 106 ESETFGIKGADEFGLPIIDIDTALVAKKHLEETLARFQSSHDENDLHIAVCGAGFTSIEY 165
Query: 260 TGTPGNREAALKV---LSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIPNIAADKN 315
G +R L A K+++ Y + +V F+ + + N +
Sbjct: 166 IGELLHRLPDFVKRFNLPAEKIKI---YCIEAAPKVLPMFDPKLVDYAVNYLKNQGVEFY 222
Query: 316 SDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE 375
++ I+E++ + + F A+ ++WT G K HV + R +
Sbjct: 223 TETPIIEVKKGAVISKDKAFNANTIIWTTGVKG--SHVINDSGYTQ-----KRNRVAVQN 275
Query: 376 TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQ 435
L P F +GD SA+ GR P T Q++ QA A N+ A +N++ PF +
Sbjct: 276 DLSSSDDPNEFIIGDVSAVPSPDGRFYPTTGQISVAQATLAASNIIAKLNNQKTSPFNYH 335
Query: 436 NLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 480
+LG + LG + SF+ L G K+A L R+ D
Sbjct: 336 SLGTVCSLGPTNGVAELSFMGHWKLKG------HKVAPLKRIVND 374
>gi|456388279|gb|EMF53769.1| transmembrane NADH dehydrogenase [Streptomyces bottropensis ATCC
25435]
Length = 468
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 106/429 (24%), Positives = 183/429 (42%), Gaps = 37/429 (8%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI I+G GF G TA L L K + L++ ++ F++ P+L ++ +G ++
Sbjct: 12 RPRIVIVGAGFAGYRTARTLARLT---RNKADITLLNPTDYFLYLPLLPQVAAGVLEPRR 68
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ L + + + + + + P GGT L YD LVL+
Sbjct: 69 VTVSLTGTLRHVRL-VLGEAEDIDLDARTVRYTDP----EGGTGTLT------YDRLVLA 117
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETTI 257
G+ KL +PG AE A F L +A + D ++E + E + V
Sbjct: 118 AGSVNKLLPIPGVAEHAHGFRGLPEALYLRDHVTRQVELAAGSQDPESCRARCTFVVVGA 177
Query: 258 CPTGTPGNREAALKVLS-ARKVQLVLGYFVRCI------RRVGEFEASVKQPESGAIPNI 310
TGT + + + R+ L G R + R + E + + + +
Sbjct: 178 GYTGTEVAAQGQMFTDALVRQQPLRDGVRPRWMLLDIAKRVLPEMDEKLSRTAGKVLRQR 237
Query: 311 AADKNSDKYILE-LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
D + + E Q + + + + ++W VG +P +P L LP+ RG
Sbjct: 238 GVDVRMETSVKEATQDGVLLSDGEFVDTRTLVWCVGVRP-----DPLAESL-GLPME-RG 290
Query: 370 QAETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNLWAAINDR 427
+ D TL V G P +FA GD++A+ D G+ P TAQ A++Q A N+ A++
Sbjct: 291 RLLVDPTLQVPGRPEVFACGDAAAVPDLTKPGQYTPMTAQHAWRQGKVAALNVAASLGRG 350
Query: 428 PLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVG 487
P+R +LG ++ LG AA +P GV L G + + +L +P + R++V
Sbjct: 351 EPKPYRHSDLGFVVDLGGVKAAANPL---GVPLSGLAAGAVTRGYHLAAMPGN--RVRVA 405
Query: 488 VSWLTKSAI 496
W + +
Sbjct: 406 ADWFLDAVL 414
>gi|425444974|ref|ZP_18825014.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9443]
gi|389735123|emb|CCI01309.1| Genome sequencing data, contig C317 [Microcystis aeruginosa PCC
9443]
Length = 459
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 102/442 (23%), Positives = 176/442 (39%), Gaps = 66/442 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K+PR+ I+GGGF GLYTA L+ + V L+D+ +F+P+LY++ +G +
Sbjct: 3 EKQPRVVIIGGGFAGLYTAKALK------NAPVHVTLIDKRNFHLFQPLLYQVATGALSP 56
Query: 137 WEIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+I+ P L + D + P G V+LE + YD L
Sbjct: 57 ADISSPLRLILRGHENTDILLDHAIDIDPVK-------------GEVILEDHPPIAYDQL 103
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS-ELERRNFERLEEKGIVQAINVE 254
V++ G +A T+EDA + R++ E+ E EK QA+
Sbjct: 104 VIATGVSHHYFGNDQWQPYAPGLKTIEDAVEMRRRIYLAFEKAEKEIDGEKR--QAL--L 159
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG------AIP 308
T + G P E L+ ++ G ++ EA + E P
Sbjct: 160 TFVIVGGGPTGVE-----LAGAIAEIAHGALRSDFHQINPTEAKILLLEGMDRVLPPYSP 214
Query: 309 NIAADKNSDKYILELQPAIKGLESQIFE---------------ADLVLWTVGSKP----- 348
+++A + L + + + I E A+ +LW G K
Sbjct: 215 DLSAKAAASLTKLGVTVQTNSIVTNIVEGCVTVRQGEKTTEIAAETILWAAGVKASRMGR 274
Query: 349 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 408
+L N L+ G+ + L + G+ IF +GD + +PLP A V
Sbjct: 275 ILAERTGVN-------LDRVGRVIVEPDLSIAGYGNIFVIGDLANFAHQGDKPLPGIAPV 327
Query: 409 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 468
A Q+ ++ L + + + + PF + + G + ++G+N A V FV+ G I
Sbjct: 328 AMQEGEYLANLLISRLKGQSIKPFHYIDRGSLAVIGQNAAVVDLGFVK---FSGFIAWLV 384
Query: 469 RKLAYLIRLPTDEHRLKVGVSW 490
A++ L +++L V V W
Sbjct: 385 WVWAHIYYLIEFDNKLVVMVQW 406
>gi|126173313|ref|YP_001049462.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella baltica OS155]
gi|386340074|ref|YP_006036440.1| NADH dehydrogenase [Shewanella baltica OS117]
gi|125996518|gb|ABN60593.1| NADH dehydrogenase [Shewanella baltica OS155]
gi|334862475|gb|AEH12946.1| NADH dehydrogenase [Shewanella baltica OS117]
Length = 429
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 148/362 (40%), Gaps = 51/362 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
+ LVD+S ++KP L+E+ G +D + D G ++ + ++ PS
Sbjct: 34 ICLVDRSPIHIWKPKLHEVAVGVIDQSLDGLLYRDHGLKNGYRYVRGEIEGCDPSGKTIQ 93
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
P+ G +L + L YD+LVL+LG+ GA E +LE+A R K
Sbjct: 94 LAPVYSDDGELLLADRAL--SYDYLVLALGSVSNTFNTKGAEENCIFLDSLENAERFHHK 151
Query: 231 LSE-LERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 289
L + L + N E +G + I G G AA L + + +
Sbjct: 152 LLDALLQLN----ESQG-----KLSIGIVGAGATGVELAA-----------ELHHVIESV 191
Query: 290 RRVGEFEASVKQPESGAI---PNI--------------AADKNSDKYILELQP---AIKG 329
+ G S + I P I DK K L +Q ++G
Sbjct: 192 KEYGYLNISKHHLDVHLIEASPKILPQLPEKVSARAQSVLDKIGIKLHLGVQVKEVTVQG 251
Query: 330 L---ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIF 386
+ + EA L +W G K P V + LP+ R Q + D + VKG I+
Sbjct: 252 FVTPDGDVIEASLKVWAAGVKG--PAV---CAKFTSLPITPRNQIDVDACMRVKGQEDIY 306
Query: 387 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 446
A+GD +AL +G+ +P AQ A Q AD N+ + D+ LPF +++ G ++ L R
Sbjct: 307 AIGDCAALILENGKAVPPRAQSADQMADRLYKNIVNRLQDKAELPFVYKDYGSLVSLSRF 366
Query: 447 DA 448
A
Sbjct: 367 SA 368
>gi|421479855|ref|ZP_15927518.1| pyridine nucleotide-disulfide oxidoreductase [Burkholderia
multivorans CF2]
gi|400222153|gb|EJO52555.1| pyridine nucleotide-disulfide oxidoreductase [Burkholderia
multivorans CF2]
Length = 452
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 162/387 (41%), Gaps = 26/387 (6%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL+ A RL + + +V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLHLATRLGDTIGRRGHA-EVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + ++ + + + G + G +L L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALQRVDRAARIATIGAVHDVDGTEILPARTL--AYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
++G+ VPGAA A P L+ A RK + R E++ A V ++
Sbjct: 132 AVGSVTNFFGVPGAARHALPLENLDQAEDFRRKFLAACTKANHRAEQQPAQPAAPVSISV 191
Query: 258 CPTGTPGNREA-----ALKVLSARKVQLVLG---YFVRCI----RRVGEFEASVKQPESG 305
G G A A++ L+ + + + G +R I R + +A +
Sbjct: 192 IGAGATGVELAAALRHAVQQLTTYRFKALDGARDVRIRLIEGAPRILPALDARLSDKMHA 251
Query: 306 AIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHD 362
+ + D +D + E+ A+ + +D+ +W G V P L
Sbjct: 252 QLRALNVDVLTDTRVAEVGADAVTIASGERLASDITIWAAG-------VAGPAILRELDG 304
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLW 421
+ LN Q +TL P + A GD +A + + LP AQVA QQA +
Sbjct: 305 IALNRSNQVIVTDTLQTPDDPHVHAFGDCAACPSNGASGCLPPRAQVAHQQAVYLSQAFA 364
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDA 448
I +P+ F F++ G ++ LG A
Sbjct: 365 RRIAGKPVAGFTFRDAGTVVSLGHAGA 391
>gi|221197481|ref|ZP_03570528.1| NADH dehydrogenase [Burkholderia multivorans CGD2M]
gi|221204154|ref|ZP_03577172.1| NADH dehydrogenase [Burkholderia multivorans CGD2]
gi|221176320|gb|EEE08749.1| NADH dehydrogenase [Burkholderia multivorans CGD2]
gi|221184035|gb|EEE16435.1| NADH dehydrogenase [Burkholderia multivorans CGD2M]
Length = 452
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 159/391 (40%), Gaps = 34/391 (8%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL+ A RL + + +V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLHLATRLGDTIGRRGHA-EVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + ++ + + + G + G +L L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALQRVDRAARIATIGAVHDADGTEILPARTL--AYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
++G+ VPGAA A P L+ A RK + R E++ A V ++
Sbjct: 132 AVGSVTNFFGVPGAARHALPLENLDQAEDFRRKFLAACTKANHRAEQQPAQPAAPVSISV 191
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 317
G G AA VQ + Y + + + + + +P + A + SD
Sbjct: 192 IGAGATGVELAAALC---HAVQQLTTYRFKALDAARDVRIRLIEGAPRILPALDA-RLSD 247
Query: 318 KYILELQP-----------------AIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--N 358
K +L+ A+ + +D+ +W G V P
Sbjct: 248 KMHAQLRALNVEVLTDTRVAEVGADAVTIASGERLASDITIWAAG-------VAGPAILR 300
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAG 417
L + LN Q +TL P ++A GD +A + + LP AQVA QQA +
Sbjct: 301 ELDGIALNRSNQVIVTDTLQTPDDPHVYAFGDCAACPSNGASGCLPPRAQVAHQQAVYLS 360
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
I +P+ F F++ G ++ LG A
Sbjct: 361 QAFARRIAGKPVARFTFRDAGTVVSLGHAGA 391
>gi|319891914|ref|YP_004148789.1| NADH dehydrogenase [Staphylococcus pseudintermedius HKU10-03]
gi|386319824|ref|YP_006015987.1| NADH dehydrogenase [Staphylococcus pseudintermedius ED99]
gi|317161610|gb|ADV05153.1| NADH dehydrogenase [Staphylococcus pseudintermedius HKU10-03]
gi|323464995|gb|ADX77148.1| NADH dehydrogenase, putative [Staphylococcus pseudintermedius ED99]
Length = 400
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 179/446 (40%), Gaps = 95/446 (21%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++ ++ +LG G+ GL T +L+ + + D Q+ L+++++ L+E +G ++
Sbjct: 3 ERKKVLVLGAGYAGLQTVTKLQKKLSEQD--AQITLINKNDYHYEATWLHEASAGTLNYE 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
++ ++L V F + V + + + T G I EYD LV+
Sbjct: 61 DVLYPIENVLKKH-VDFVRAEVTKIDRNAK-----KVETTRG---------IFEYDILVV 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS------------------------- 232
+LG E + + G E AF + A ++ R L
Sbjct: 106 ALGFESETFGIEGMKEHAFQIENVNTARQISRHLEDKFANYAASKTKDDKDLAILVGGAG 165
Query: 233 --------ELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 284
EL R E + G+ Q+ V+ T EAA K+L +LV
Sbjct: 166 FTGIEFLGELTDRIPELANKYGVEQS-KVKVTCV--------EAAPKMLPMFSDELVSHA 216
Query: 285 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 344
+R EF+ P +AA N +++++ E Q EA+ V+W
Sbjct: 217 VSYLEQRGVEFKVGT--------PIVAA--NDKGFVVKIND-----EEQQLEANTVIWAA 261
Query: 345 GSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSALRDSSG-RP 401
G + ++L + RG+ T + L ++G+ IF +GD SA G RP
Sbjct: 262 GVR---------GSQLMEKSFEGVKRGRIVTKQDLTIEGYDDIFVIGDVSAFIPEGGDRP 312
Query: 402 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLD 461
LP TAQ+A QQ + N+ + P F++ + G + LGR+D V G +
Sbjct: 313 LPTTAQIAMQQGEKTASNIVNILKGAPTEDFKYSDRGTVCSLGRHDGV---GIVYGREIT 369
Query: 462 GPIGHSARKLAYLIRLPTDEHRLKVG 487
G +K A++ R+ K+G
Sbjct: 370 G------KKAAFMKRVIDTRAIFKIG 389
>gi|110635841|ref|YP_676049.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chelativorans sp. BNC1]
gi|110286825|gb|ABG64884.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Chelativorans sp. BNC1]
Length = 471
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 106/432 (24%), Positives = 168/432 (38%), Gaps = 53/432 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ RI I+G GF GL A L V+L+D+ +F+P+LY++ + + A
Sbjct: 23 RSSRIVIVGAGFAGLEAAKEL------GRAGIPVVLLDRQNHHLFQPLLYQVATAALSAA 76
Query: 138 EIAPRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA +L VQ V ++ H L G + +D+L+
Sbjct: 77 DIAEPIRKILRPYESVQVLLGEVT--------SIDMAARVLH-----LADGSCLNFDYLI 123
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
L+ GA P A FA T+ DA R+ K FER E + T
Sbjct: 124 LATGASHSYFGHPDWARFAPGLKTIADARRIRAK----ALLAFERAERTLDPDEQARQMT 179
Query: 257 IC-----PTGT--PGNREAALKVLSARKVQLVLGYFVRCI------RRVGEFEASVKQPE 303
I PTG G+ ++ AR + R + R + F +
Sbjct: 180 IAIVGGGPTGVELAGSLAELSRLTLARDFRSARPEAARIMLIEAGPRILPAFSEKISAYA 239
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNRLH 361
+ + + ++ + ++Q LVLW G + PL + +R
Sbjct: 240 HERLERLGVEVHTSTPVEDIQKDSITFGGSTVPVGLVLWAAGVAASPLAAQLGAETDRA- 298
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 421
G+ D + V+G +FA+GD++ G+PLP AQVA QQ G L
Sbjct: 299 -------GRVIVDGAMRVRGLRNVFAMGDAALFAGQDGKPLPGLAQVAKQQGRHLGRMLA 351
Query: 422 AAIND-RPLLPFRFQNLGEMMILGRNDAAVSPSFVEG-VTLDGPIGHSARKLAYLIRLPT 479
+ D +PL F + G I+GR+ A F +G L G + + + ++ L
Sbjct: 352 RHLRDGKPLDEFVYHGRGNTAIVGRHAAV----FEQGRFKLTGWLAWLSWAIIHVYLLVG 407
Query: 480 DEHRLKVGVSWL 491
+HRL V V WL
Sbjct: 408 FQHRLTVSVQWL 419
>gi|336394136|ref|ZP_08575535.1| pyridine nucleotide-disulphide oxidoreductase [Lactobacillus
farciminis KCTC 3681]
Length = 395
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/393 (23%), Positives = 165/393 (41%), Gaps = 72/393 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I +LG G+GGL A L Q+ L+D++E+ V K L+ + +G A ++
Sbjct: 3 HILVLGAGYGGLRAA---RDLAKSTPAGTQIDLIDKNEKHVEKTALHTIAAGTNRADAVS 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+L + V F K V L + TV + YD++V+SLG
Sbjct: 60 FDVRSVLP-SNVNFIKATVSKLDLDNK-------------TVEFSDHEDITYDYIVVSLG 105
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
+ + GA+E A LE A + + +++ N+++ + + I +C
Sbjct: 106 FRSEDFGLEGASENALILQDLETAQNIYKTINQ-NIANYKKSNDPADLSII-----VCGA 159
Query: 261 GTPGNREAALKVLSARKVQLVLGYFVRCIR------RVGEFEASVKQPESGAIP----NI 310
G G +LG V ++ V E + + + + +P N+
Sbjct: 160 GFTGVE--------------ILGELVDTVKILKAKYEVPEIKVTCLEMATRILPMFDENL 205
Query: 311 AA------DKNSDKY-----ILELQPA----IKGLESQIFEADLVLWTVGSKPLLPHVEP 355
A DKN K I +++P + G + E ++WTVG
Sbjct: 206 ATYAVDYLDKNGIKLLTGAKIKKIEPKSVVYMDGDTEKSVEGSTIIWTVGV--------S 257
Query: 356 PNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQA 413
++ + D ++AR + T E L ++ HP + +GD SA+ RP P T Q+A +
Sbjct: 258 GSDVIKDSGIDARRNRVMTTEFLNLEAHPEAYFIGDDSAIIPKGEERPYPTTGQLATAEG 317
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 446
A +N+ AA+N + L PF + ++G + LG+N
Sbjct: 318 SGAAFNIAAALNGKDLKPFIYHSMGTVASLGQN 350
>gi|378764042|ref|YP_005192658.1| putative NADH dehydrogenase [Sinorhizobium fredii HH103]
gi|365183670|emb|CCF00519.1| putative NADH dehydrogenase [Sinorhizobium fredii HH103]
Length = 435
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/392 (23%), Positives = 153/392 (39%), Gaps = 55/392 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVD 135
+++PRI ILG GFGGL A+ L + P V ++D+ +F+P+LY++ + +
Sbjct: 20 ERRPRIVILGAGFGGLNAAMSLR-------RAPVDVTVIDRRNYHLFQPLLYQVATAGLS 72
Query: 136 AWEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+IA +L+ DRV+ A ++ V YD+
Sbjct: 73 PAQIAMPIRRILSRQANATVLMDRVE--------------AVDVAAKFVVTRNRRVAYDY 118
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE 254
LV++ GA A+ A T+ DA + ++ FER E Q+
Sbjct: 119 LVIATGARHTYFGNDAWADHAPGLKTIADATAIRARILS----AFERAEVTDDPQSRKRL 174
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--------- 305
T G L+ V+L VR RR+ A V E+G
Sbjct: 175 LTFVVVGG----GPTGVELAGAIVELARKAIVRDFRRIDASSARVVLIEAGERILPTMPP 230
Query: 306 --------AIPNIAADKNSDKYILELQ-PAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
+ + A+ K + E ++ + + VLW G +
Sbjct: 231 ALSARACEQLEGLGAEIVLGKAVAECDGSGVRLADGTEIGSACVLWAAGV------MASR 284
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ P + G+ + DE L GH +F +GD++ D++GRP+P A A Q +A
Sbjct: 285 AAKWIGAPADRAGRVKVDECLNPPGHDEVFVIGDTALAIDAAGRPVPGVAPAAKQMGRYA 344
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ + R PFR+++ G + +GR A
Sbjct: 345 ARAILDHMAGRRAAPFRYRDFGNLATIGRKAA 376
>gi|219871782|ref|YP_002476157.1| NADH dehydrogenase [Haemophilus parasuis SH0165]
gi|219691986|gb|ACL33209.1| NADH dehydrogenase [Haemophilus parasuis SH0165]
Length = 427
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 154/352 (43%), Gaps = 37/352 (10%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
++LVD++ ++KP+L+E+ +G +D A + N +F + + + P++ + V
Sbjct: 32 IILVDKNISHLWKPLLHEVAAGSLDDGTDALSYRAHAKNHHFEFRQGTLTQVKPAEKIIV 91
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
P+ G ++ E ++ YD LVL++G+ PG AE + E A ++
Sbjct: 92 LAPIYDEAGELLVAERTIV--YDKLVLAIGSRSNDFNTPGVAEHCIFLDSSEQAKVFHKR 149
Query: 231 LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY--FVRC 288
+ EL + F EK V + G G E + ++ +A K GY
Sbjct: 150 MMELFLK-FSNNNEK------EVHIAVVGGGATG-IELSAELYNAVKHLNSYGYGKLDNT 201
Query: 289 IRRVGEFEASVK----QPESGAIPNIAADKNSDKYILELQPAIK----GLESQI---FEA 337
+V EA + PE + I + +L P I+ GL ++ F+A
Sbjct: 202 SLKVTLLEAGERLLPALPERVSASAIKELRALGVDVLTNTPVIRATAEGLVTKYDENFKA 261
Query: 338 DLVLWTVGSKPLLPHVEPP----NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 393
DL++W G K P + NR++ + + Q TDE ++ +GD +
Sbjct: 262 DLMVWAAGVKA--PEITKTFGFETNRINQIAIKDTLQTLTDEN--------VYVIGDCAF 311
Query: 394 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
L + G+P+P AQ A Q A G N+ A + ++PL F F + G ++ R
Sbjct: 312 LLQADGKPVPPRAQSAHQMATVCGKNILAQLENKPLKAFIFDDKGSLISFSR 363
>gi|402307142|ref|ZP_10826170.1| NADH dehydrogenase [Haemophilus sputorum HK 2154]
gi|400373367|gb|EJP26300.1| NADH dehydrogenase [Haemophilus sputorum HK 2154]
Length = 426
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 145/347 (41%), Gaps = 28/347 (8%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ +VLL+D++ ++KP+L+E+ +G +D A + AN G QF + + +
Sbjct: 28 KRAKVLLIDRNPTHLWKPLLHEVATGSLDDGTDAVSYRAHAANHGFQFQQGTLTGVNREQ 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ P+ G ++ E + YD LV+++G++ G AE E A +
Sbjct: 88 REVILAPIVDEQGEELVKERH--ISYDKLVIAIGSKSNDFGTKGVAEHCIFLDGSEQAKQ 145
Query: 227 VDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPG-NREAALKVLSARKVQLVLGYF 285
+++ EL + F ++K +V+ I G G A L A + G
Sbjct: 146 FQQRMLELFLK-FSHSQDK------DVKIAIVGGGATGIELSAELYNAVAHLNEYGFGKL 198
Query: 286 VRCIRRVGEFEA----------SVKQPESGAIPNIAADKNSDKYILE-LQPAIKGLESQI 334
R +V EA V + D + I E ++ A+ + +
Sbjct: 199 DRASLKVTLVEAGPRLIPTLTEKVSNSALSELRKAGVDVRLNTMITEAVEGALITKDGEK 258
Query: 335 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 394
EADL++W G K P + N Q E +TL P +F +GD +AL
Sbjct: 259 IEADLMVWAAGIKA------PDFTKEFGFETNRLNQIEVKDTLQTTIDPNVFVIGDCAAL 312
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 441
G+ +P AQ A Q A G N+ A + + PFRF++ G ++
Sbjct: 313 I-QDGKAIPPRAQAAHQMATQCGKNIVALSEGKEMKPFRFRDKGSLL 358
>gi|373948532|ref|ZP_09608493.1| NADH dehydrogenase [Shewanella baltica OS183]
gi|386325623|ref|YP_006021740.1| NADH dehydrogenase [Shewanella baltica BA175]
gi|333819768|gb|AEG12434.1| NADH dehydrogenase [Shewanella baltica BA175]
gi|373885132|gb|EHQ14024.1| NADH dehydrogenase [Shewanella baltica OS183]
Length = 429
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 147/362 (40%), Gaps = 51/362 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
+ LVD+S ++KP L+E+ G +D + D G ++ + ++ PS
Sbjct: 34 ICLVDRSPIHIWKPKLHEVAVGVIDQSLDGLLYRDHGLKNGYRYVRGEIEGCDPSGKTIQ 93
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
P+ G +L + L YD+LVL+LG+ GA E +LE+A R K
Sbjct: 94 LAPVYSDDGELLLADRAL--SYDYLVLALGSVSNTFNTKGAEENCIFLDSLENAERFHHK 151
Query: 231 LSE-LERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 289
L + L + N E +G + I G G AA L + + +
Sbjct: 152 LLDALLQLN----ESQG-----KLSIGIVGAGATGVELAA-----------ELHHVIESV 191
Query: 290 RRVGEFEASVKQPESGAI---PNIA----------ADKNSDKYILELQPAIKGLE----- 331
+ G S + I P I A DK ++L ++ E
Sbjct: 192 KEYGYLNISKHHLDVHLIEASPKILPQLPEKVSARAQSVLDKIGIKLHLGVQVKEVTAQG 251
Query: 332 -----SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIF 386
+ EA L +W G K P V + LP+ R Q + D + VKG I+
Sbjct: 252 FVTPDGDVIEASLKVWAAGVKG--PAV---CAKFTSLPITPRNQIDVDACMRVKGQEDIY 306
Query: 387 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 446
A+GD +AL +G+ +P AQ A Q AD N+ + D+ LPF +++ G ++ L R
Sbjct: 307 AIGDCAALILENGKAVPPRAQSADQMADRLYKNIVNRLQDKAELPFVYKDYGSLVSLSRF 366
Query: 447 DA 448
A
Sbjct: 367 SA 368
>gi|388545747|ref|ZP_10149027.1| hypothetical protein PMM47T1_15181 [Pseudomonas sp. M47T1]
gi|388276158|gb|EIK95740.1| hypothetical protein PMM47T1_15181 [Pseudomonas sp. M47T1]
Length = 400
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 140/365 (38%), Gaps = 41/365 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K I ILG GFGGL+TAL L Q + +V ++ +P YE DA
Sbjct: 2 KQHILILGAGFGGLWTALGATRLFNQHGHRDTRVSVLAPQAELRIRPRFYE-----PDAH 56
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A DLLA V F K + ++ C T + + YD LVL
Sbjct: 57 RLAAPIGDLLAAVDVDFIKGAAQ--------AIDVAAKCVRY-TDAFGASQVCRYDKLVL 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+ G+ L PG AE AF +E A R++ L L R+ R +V
Sbjct: 108 ATGSGLALPGAPGVAEHAFDVDQIEQAVRLENHLKALARQPESRGRNTVVVAGGGFTGIE 167
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 317
T PG A L + V +V R + AS+ + +IA ++
Sbjct: 168 TATQMPGRLRAILGEQANIDVIIV--------DRGAQVGASMGAEIA---ESIAQASDAL 216
Query: 318 KYILELQPAIKGLES--------QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
LQ ++ +++ Q EA V+WT G + + P R + G
Sbjct: 217 GVSWRLQSSVVAVDAQGVTLEDGQCIEAHTVIWTTGVRAHGLTAQVPGER------DGLG 270
Query: 370 QAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
+ D L V G I+A GD + A D G T Q A F+G N+ A +
Sbjct: 271 RLHVDVNLKVIGQHDIYATGDVAHAATDELGNHALMTCQHAIMLGRFSGHNVAAQVLGVE 330
Query: 429 LLPFR 433
LP+R
Sbjct: 331 PLPYR 335
>gi|265985530|ref|ZP_06098265.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella sp. 83/13]
gi|306838133|ref|ZP_07470990.1| NADH dehydrogenase [Brucella sp. NF 2653]
gi|264664122|gb|EEZ34383.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella sp. 83/13]
gi|306406870|gb|EFM63092.1| NADH dehydrogenase [Brucella sp. NF 2653]
Length = 424
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 180/429 (41%), Gaps = 51/429 (11%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ++G GFGGL L D K ++ L+DQ +F+P+LY++ + + EI
Sbjct: 7 PHIVVVGAGFGGLQLIRDL------DGAKVRITLIDQRNHHLFQPLLYQVATTILSTSEI 60
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A +L F++R ++ + LG + T +VLLE+G V YD LVL+
Sbjct: 61 AWPIRNL--------FRNRAEV---TTLLGTVIDVD-TARKSVLLENGDEVSYDMLVLAT 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
GA + A LEDA + R+L L ER + QA+ + +I
Sbjct: 109 GARHAYFGNDQWEKLAPGLKALEDATTIRRRLL-LAFERAEREPDMARRQAL-LTFSIVG 166
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP---NIA 311
G G A + AR+ R + +A V E+G A P +
Sbjct: 167 GGPTGVELAGIIAELARRT------LWPEFRNIDTRQARVLLLEAGPRILSAFPEDLSTY 220
Query: 312 ADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE----PPNNRLHDLPLNA 367
A K +K +E++ I I + + TVG + + H L L+A
Sbjct: 221 ARKALEKLGVEVRLGIP--VKDITQEGV---TVGDEFIPCHTTVWAAGVAASPAALWLDA 275
Query: 368 R----GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
G+ + L V GH IFA+GD++ + G P+P A A QQ + + +
Sbjct: 276 ESDRAGRVKVLSNLSVPGHEDIFAIGDTAWVEGDDGHPVPGIAPAAKQQGAYVATVIRSR 335
Query: 424 I-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 482
+ N P LPFR+++ G + +G+ A V + L G I +A++ L
Sbjct: 336 VENKTPPLPFRYRHQGNLATIGKGAAVVDMGRIR---LKGTIAWWFWGIAHIFFLIGTRS 392
Query: 483 RLKVGVSWL 491
R V SWL
Sbjct: 393 RAAVAWSWL 401
>gi|217974378|ref|YP_002359129.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella baltica OS223]
gi|217499513|gb|ACK47706.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Shewanella baltica OS223]
Length = 429
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 150/363 (41%), Gaps = 37/363 (10%)
Query: 103 WQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL 162
W V L+D+S ++KP L+E+ G +D + D G ++ + ++
Sbjct: 26 WGGSDVVDVCLIDRSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYIRGDIEQ- 84
Query: 163 CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLE 222
C D + G +LLE I +YD+LVL+LG GA E +LE
Sbjct: 85 CDPDAKSIQLAAVYNDEGELLLEQRQI-DYDFLVLALGGVSNSFNTLGADEHCIFLDSLE 143
Query: 223 DACRVDRKLSE--LERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQL 280
+A KL + L+ + GIV A TG E + S ++
Sbjct: 144 NANLFHHKLLDALLQLNETQERVSIGIVGA-------GATGVELAAELHHVIESVKE--- 193
Query: 281 VLGYF--VRCIRRVGEFEASVK-QPESGAIPNIAADKNSDKYILELQPAIK-------GL 330
GY + V EAS K P+ + A DK + L ++ G
Sbjct: 194 -YGYLNIAKHHLDVHLIEASPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTRDGF 252
Query: 331 ESQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRI 385
+Q + +A L +W G V+ P LP+ R Q E D+ + VKGH I
Sbjct: 253 ITQDGDVIKAGLKVWAAG-------VKGPKAFQNFTKLPITPRNQVEVDDCMRVKGHQDI 305
Query: 386 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
+A+GD + L SSG+P+P AQ A Q AD N+ + +P F +++ G ++ L R
Sbjct: 306 YAVGDCALLIQSSGQPVPPRAQAAAQMADTLFDNIVNRLQGKPEKAFIYKDYGSLVSLSR 365
Query: 446 NDA 448
A
Sbjct: 366 FSA 368
>gi|379708916|ref|YP_005264121.1| putative oxidoreductase [Nocardia cyriacigeorgica GUH-2]
gi|374846415|emb|CCF63485.1| putative oxidoreductase [Nocardia cyriacigeorgica GUH-2]
Length = 397
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 159/381 (41%), Gaps = 60/381 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K RI +LG G+ G Y A L + D+ ++ +V+ FV + L++L +G E
Sbjct: 2 KHRIVVLGAGYAGAYCAGYLARKLRADEV--EITVVNAEPDFVERLRLHQLAAGH----E 55
Query: 139 IAPR-FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL-IVEYDWLV 196
+ R +++ A TG+ RV L +DH V T+ SG+ +EYD LV
Sbjct: 56 LPRRPLSEVFAGTGIVLRTARVTAL-DADHRTV----------TIADGSGVDRIEYDTLV 104
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
+LG+ VPG EFAF + A R+ +L EL+ + + AI T
Sbjct: 105 YTLGSAGAGHGVPGVGEFAFDVAARPSALRLRARLDELDGTGKVVVVGGNL-TAIETVTE 163
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLG-----YFVRCIRRVGEFEASVKQPESGAIPNIA 311
I PG + ++++ +V LG + +R R G + E A+ +
Sbjct: 164 IAEA-HPGLE---VSLVTSGEVGGWLGPKARRHLLRAFERFG-----ISIHEHTAVERVD 214
Query: 312 ADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQA 371
+ A+ + +F +D +W G +P + L + A G+
Sbjct: 215 ------------ETAVVAADGAVFASDATVWAAGFA--VPAIAAAGG----LAVQADGRI 256
Query: 372 ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI----NDR 427
D + HP ++A GDS + ++GRPLP ++ A F G +AI R
Sbjct: 257 TVDRQMRSVSHPNVYAAGDSVFVIGANGRPLP----MSCASAGFTGMQAVSAIVGDLTGR 312
Query: 428 PLLPFRFQNLGEMMILGRNDA 448
+ +G + LGR DA
Sbjct: 313 AVKATALSYVGNHISLGRRDA 333
>gi|227818786|ref|YP_002822757.1| NADH dehydrogenase [Sinorhizobium fredii NGR234]
gi|36959043|gb|AAQ87468.1| NADH Dehydrogenase [Sinorhizobium fredii NGR234]
gi|227337785|gb|ACP22004.1| putative NADH dehydrogenase [Sinorhizobium fredii NGR234]
Length = 438
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/393 (24%), Positives = 160/393 (40%), Gaps = 57/393 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVD 135
K +P + ILG GFGGL A+ L + P +V ++D+ +F+P+LY++ + +
Sbjct: 23 KHRPHVVILGAGFGGLNAAVALH-------RAPVEVTVIDRRNYHLFQPLLYQVATAGLS 75
Query: 136 AWEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+IA +L+ + D+V+ L + C ++ + YD+
Sbjct: 76 PAQIAMPIRRILSRQSNATVLMDKVEAL--------DTAARC------VVTVSRRIPYDY 121
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFERLEEKGIVQAINV 253
L+++ GA A+ A T+ DA + R LS ER E ++ + +
Sbjct: 122 LIVATGARHTYFGNDDWADHAPGLKTITDATAIRARILSAFER--AEVTDDPCLRH--KL 177
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP 308
T I G P E L+ +L VR RR+ A V E+G A+P
Sbjct: 178 LTFIVVGGGPTGVE-----LAGAIAELARRTIVRDFRRIDSSSARVVLVEAGERILPAMP 232
Query: 309 NIAADKNSDKY------ILELQPAIKGLESQIFEAD-------LVLWTVGSKPLLPHVEP 355
+ K + +L +S + AD +LW G +
Sbjct: 233 CCLSRKAQRQLEGLGVEVLLGNAVASCDDSGVRLADGTEIGSACILWAAGV------MAS 286
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ + G+ DE L GH IF +GD++++ + GRP+P A A Q +
Sbjct: 287 RAGKWIGAAADRAGRVIVDERLNPPGHSEIFVIGDTASVTGADGRPVPGVAPAAKQMGRY 346
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
A + I RP PFR+++ G + +GR A
Sbjct: 347 AARMILGDIAGRPSAPFRYRDYGNLATIGRKAA 379
>gi|387770824|ref|ZP_10126997.1| NADH dehydrogenase [Pasteurella bettyae CCUG 2042]
gi|386903245|gb|EIJ68061.1| NADH dehydrogenase [Pasteurella bettyae CCUG 2042]
Length = 443
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/395 (22%), Positives = 165/395 (41%), Gaps = 42/395 (10%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
++ V LVD+++ ++KP+L+E+ +G +D+ A + N F + + + ++
Sbjct: 28 QRANVTLVDRNQTHLWKPLLHEVATGVLDSETDAVSYRAHAHNHHFNFEQGSITRIDRTN 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G +++ + YD+LVL++G++ G AE + + A R
Sbjct: 88 KYVELAPITGQEGDILVVARR--IPYDYLVLAIGSQSNDFNTKGVAEHCIFLDSPDQAIR 145
Query: 227 VDRKLSELERRNFER--LEEKG-------IVQAINVETTICPTGTPGNR------EAALK 271
K+ EL + E LEE G +VQ V I G G AA
Sbjct: 146 FQHKMLELFLKFAENNALEEIGEDESKQKLVQDGKVNIAIVGGGATGVELSAELFNAAQH 205
Query: 272 VLSARKVQLVLGYFVRCIRRVGE---------FEASVKQPESGAIPNIAADKNSDKYILE 322
+ S ++ G+ + G+ +SV+Q + N+ + I E
Sbjct: 206 LSSYGYGKIKSGHLQVTLIEAGDRILPALPERISSSVQQE----LENLGVKVQTSTMITE 261
Query: 323 -LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKG 381
+ + E + ADL++W G + V + L +N Q +L
Sbjct: 262 ATKNTLLTKEGKEISADLMVWAAGIR-----VSKITQQFDGLEINRINQICVKNSLQTTV 316
Query: 382 HPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 441
IFA+GD + L G+P+P Q A Q A G N+ A N++PL F++ + G ++
Sbjct: 317 DESIFAIGDCAYLLQKDGKPVPPRGQAANQMATICGQNIVAIFNNKPLKDFQYFDKGSLV 376
Query: 442 ILGRNDA--AVSPSFVEGVTLDGPIGHSARKLAYL 474
L + A ++ +T++G + +LAY+
Sbjct: 377 SLSKFTALGNITTGKKSSLTIEGRLA----RLAYI 407
>gi|411120891|ref|ZP_11393263.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410709560|gb|EKQ67075.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 433
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 97/426 (22%), Positives = 172/426 (40%), Gaps = 43/426 (10%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
KK P++ ++G GFGG+ A L VLL+D++ F P+LY++ +++
Sbjct: 2 KKCPQVLVIGAGFGGMQAAQSLAG------SGADVLLIDRNNYNSFIPLLYQVAFAQLEP 55
Query: 137 WEIAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
IA L + V+F L+ ++ + T + YD+L
Sbjct: 56 GLIAYPVRTLFRRVSNVRF------LMADVQYIDLRQKYLETERDRI--------PYDYL 101
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS---ELERRNFERLEEKGIVQAIN 252
VL+ G++ ++ VPGA+E A P TLEDA + + E+ + + ++ +
Sbjct: 102 VLATGSQSRISGVPGASEVALPLRTLEDAIALRNHVVLRLEMASHEPDPDRRQQLLTFVI 161
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI------RRVGEFEASVKQPESGA 306
V G L+ L R ++ + R + + S+ +
Sbjct: 162 VGGGATGVEVAGALIELLRSLQRRDYPMLRREKAHVVMLQASDRLLPDLPPSLGGYTAKK 221
Query: 307 IPNIAADKNSDKYILELQPAIKGLES-QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
+ I D + ++ P L++ Q + V+WT G + +P V +
Sbjct: 222 LRQIGVDVRLGVKVSQVAPQAVYLQNGQSISTETVIWTAGLEAAVPEVA------DTVEA 275
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425
RG+ T TL + P ++A+GD + + D+ L A A Q N+ +
Sbjct: 276 TPRGKLTTLPTLQLPNFPEVYAIGDVAQVADAD---LTGVAPEALQAGVAVARNIHLQMK 332
Query: 426 DRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLK 485
R PF + N G + I+G + GVTL G + +L+ LP +RL
Sbjct: 333 GRSPKPFSYFNKGRLAIIGCYSGV---GQIAGVTLTGFLPWFMWLAVHLVYLPGFRNRLL 389
Query: 486 VGVSWL 491
V +SW+
Sbjct: 390 VFLSWI 395
>gi|359395628|ref|ZP_09188680.1| NADH dehydrogenase [Halomonas boliviensis LC1]
gi|357969893|gb|EHJ92340.1| NADH dehydrogenase [Halomonas boliviensis LC1]
Length = 426
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/407 (23%), Positives = 167/407 (41%), Gaps = 41/407 (10%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ +++L+D++ V+KP+L+EL +G +++ + DL ++ F++ + L
Sbjct: 24 KRAEIVLLDRNTTHVWKPLLHELATGVLNS---SMDEVDLRGHSSAHFYRYQRGSLT--- 77
Query: 167 HLGVNGPMACTHGGTVLLESGLIV------EYDWLVLSLGAEPKLDVVPGAAEFAFPFST 220
G+N + E G V YD+LV+++G+ PG AE +
Sbjct: 78 --GLNREQQTLQLAPIHDEDGQEVLPARELAYDYLVMAIGSVSNDFGTPGVAEHCHFIDS 135
Query: 221 LEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAA-----LKVLSA 275
E A R + F R + + Q + I G G AA ++L+A
Sbjct: 136 PEQAKAFQRDMIN----TFLRYTDPNLRQHTQLTIGIVGGGATGVELAAELFDASRMLNA 191
Query: 276 RKV------QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA--I 327
V Q+ + R + V + + ++ ++D + E Q +
Sbjct: 192 YGVTSLDNQQISVHLLEAAPRLLPGLSERVSETVKTELESMGVTVHTDTAVKEAQAHQLV 251
Query: 328 KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFA 387
G + ++ + D+ +W G K PP L N + Q + TL +IFA
Sbjct: 252 TG-DDEVIKTDINVWAAGIKA------PPFLAELGLTTNKKNQIDVKSTLQSVDDEKIFA 304
Query: 388 LGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 447
LGD ++ +P AQ A QQA NL + +PL FR+++ G ++ L R D
Sbjct: 305 LGDCASCPMGEDSTVPPRAQAAHQQAKLLAKNLVNLLEGKPLADFRYRDHGSLVSLARFD 364
Query: 448 AA---VSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
A + S G+ L+G + A Y + + K G++WL
Sbjct: 365 AVGNLMRSSASRGLFLEGWLARQAYASLYRMHQLSIHGAPKTGLAWL 411
>gi|87125061|ref|ZP_01080908.1| NAD binding site:FAD-dependent pyridine nucleotide-disulphide
[Synechococcus sp. RS9917]
gi|86167381|gb|EAQ68641.1| NAD binding site:FAD-dependent pyridine nucleotide-disulphide
[Synechococcus sp. RS9917]
Length = 503
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 107/467 (22%), Positives = 173/467 (37%), Gaps = 114/467 (24%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ P + I+GGGF G+ L + + ++ L+D+ +F+P+LY++ +G V
Sbjct: 18 RHAPHVVIVGGGFAGVRACKALA------NAEVRITLIDKRNFNLFQPLLYQVATGLVSR 71
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A L+ VQ V + P+ G ++ +G YD L
Sbjct: 72 GDVATPLRQLVGKQRNVQVLLGEVTQIHPA--------------GKQIVFNGKAYSYDHL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------------------------ 231
VL+ G+ FA P LE A + R+L
Sbjct: 118 VLATGSGSTFFGHEDWRTFAPPMKILEHAEEIRRRLLMALEQAEQTPDPQVRQFLQTVVI 177
Query: 232 --------------SELERRNFERLEEKGIVQAINVETTICPTGTPGNR----------E 267
SEL R R + +N +TT PG+R E
Sbjct: 178 VGGGPTGCEMAGAVSELMRNAMRRE-----FRQLNPDTTRIVLVDPGDRVLRAMPEMLSE 232
Query: 268 AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI 327
+A K L V+++ V+ +R E +V PE
Sbjct: 233 SARKTLEGLGVEMLFKGRVQTMR---PGEVTVGTPEG----------------------- 266
Query: 328 KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFA 387
+ +A V+WT G +P H+ D L+ G+ + VKGHP I
Sbjct: 267 ----DRRLQAATVIWTAGVRP--SHLGRKLAEEIDCDLDRGGRVVVEPDFSVKGHPEIRV 320
Query: 388 LGDSSALRDSS-GRPLPATAQVAFQQADFAGWNLWAAI--NDRPLLPFRFQNLGEMMILG 444
+GD + G+PLP A A Q F G ++ A + ++RP F + + G M +L
Sbjct: 321 VGDLCCYTHTKDGKPLPGMAGPATQAGGFVGKDIAAIVAGSNRP--NFSWFDFGSMAVLD 378
Query: 445 RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
R A + G G IG +A+L +P E+R+ + + WL
Sbjct: 379 RVSAVAD---LRGFKFSGGIGWLLWAVAHLAFMPNTENRISLLIKWL 422
>gi|374288695|ref|YP_005035780.1| putative transmembrane NADH dehydrogenase [Bacteriovorax marinus
SJ]
gi|301167236|emb|CBW26818.1| putative transmembrane NADH dehydrogenase [Bacteriovorax marinus
SJ]
Length = 420
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/390 (22%), Positives = 161/390 (41%), Gaps = 52/390 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
KKK I+G GFGGL A++L K +VLL+D++ +F+P+LY++ + +
Sbjct: 2 KKKFSTIIIGAGFGGLNAAIKL------GKKNQEVLLIDKTNHHLFQPLLYQVATAGLSP 55
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA ++L + D V + + + L+S +E+D L
Sbjct: 56 ADIATPVREILKKYPSITIIMDEVLDISKEEK-------------KLSLKSLHTLEFDNL 102
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
+++ GA ++A +L+DA R+ + ++FE+ E + Q I T
Sbjct: 103 IVATGARHSYFGNDQWEQYAPGLKSLDDALRIRENV----LKSFEKSELESDQQRIEALT 158
Query: 256 TIC-----PTGTP---GNREAALKVLSAR---------KVQLVLGYFVRCIRRVGEFEAS 298
T PTG E A K L+ K+ L+ G R + F +
Sbjct: 159 TFVIIGAGPTGVEMAGAIAEIATKTLAKNFSNIDPKTSKIYLIEG----GDRVLSTFHPT 214
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
+ + + ++ + ++ ++ + ++W G+K P N
Sbjct: 215 LSEKSKKDLESLGVIVKLNSFVKDINENGVLVGEDFIPTKNIVWAAGNK-----ANPILN 269
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
L D+ L+ +A +KGHP I+ +GD++ +D R LP A VA QQ +
Sbjct: 270 SL-DIELDRMQRAIVQNDCSIKGHPDIYVIGDAACFQDGE-RTLPGLAPVAAQQGKYVAT 327
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ + PF + + G M +G++ A
Sbjct: 328 IISKRLPKGKRNPFHYMDKGSMATIGKSKA 357
>gi|315506302|ref|YP_004085189.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Micromonospora sp. L5]
gi|315412921|gb|ADU11038.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Micromonospora sp. L5]
Length = 432
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 107/428 (25%), Positives = 182/428 (42%), Gaps = 48/428 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPR+ I+G GF G + A L L + +++L++ ++ F++ P+L E+ +G V+
Sbjct: 3 KPRVVIVGAGFAGYHAAKTLRRLA---RDRAEIVLLNTTDYFLYLPLLPEVAAGVVEPTR 59
Query: 139 IAPRFADLLANTGVQFFK-DRVKLLCP-SDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
IA A L V + DRV L + V G HG + YD LV
Sbjct: 60 IAVPLAGTLDGVRVVIGEADRVDLQNRWVGYRSVEG----DHGQ---------LAYDRLV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVET 255
LS+G+ KL +PG E+A F L +A + D + ++E L + Q
Sbjct: 107 LSVGSVNKLLPIPGVTEYAHGFRGLPEALFLHDHVVRQVE---LAELTQDPAEQRARTTF 163
Query: 256 TICPTGTPGNREAAL------KVLSAR---KVQLVLGYFVRCIRRVGEFEASVKQPESGA 306
+ G G AA ++++ R KV+ R + E + +
Sbjct: 164 VVVGAGYTGTEVAAHGQLFTDRLMAQRPHLKVRPRWMLLDVAPRVLPELDRRMSVTADRV 223
Query: 307 IPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
+ D + E P + + + ++W VG + P+ + +L L
Sbjct: 224 LRKRGVDVRMGTSVAEATPDGVMLTDGEYVPTCSLVWCVGVR--------PDPFVAELGL 275
Query: 366 NA-RGQAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPATAQVAFQQADFAGWNLWA 422
+G+ DE L V G+P +FA GD++A+ D + G+ TAQ A +Q A N+ A
Sbjct: 276 RTEKGRLVVDEFLNVPGYPEVFACGDAAAVPDPTRPGQVCAMTAQHAQRQGKLAAHNIAA 335
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 482
+ ++ +LG ++ LG DAA +P V L G + + +L+ +P +
Sbjct: 336 SYGQGVRKSYKHHDLGWVVDLGGKDAAANPL---KVPLAGLPAKAVTRGYHLLAMPGN-- 390
Query: 483 RLKVGVSW 490
R +V W
Sbjct: 391 RPRVAADW 398
>gi|81298912|ref|YP_399120.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 7942]
gi|81167793|gb|ABB56133.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 7942]
Length = 444
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 114/415 (27%), Positives = 168/415 (40%), Gaps = 73/415 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPR+ ++GGGFGGLYTAL L ++ L+D+ +F+P+LY++ +GE+ +
Sbjct: 7 KPRVVVIGGGFGGLYTALNL------GKTSVELTLIDKRNFHLFQPLLYQVATGEISPGD 60
Query: 139 I-APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I AP A + N + V + P H G IVEYD+LV+
Sbjct: 61 IAAPLRAIVGRNPNTRVILGEVTDIDPQAHWVRVGDE--------------IVEYDYLVV 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS-ELERRNFERLEEKGIVQAINVETT 256
+ GA FA T+EDA + R++ LE+ E E+ Q + T
Sbjct: 107 ATGASHHYFGNDQWQPFAPGLKTVEDALEMRRRIYFALEQAEQESDPER---QQAWLTFT 163
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI------PNI 310
I G G L+ +L G + R V +A V E P +
Sbjct: 164 IVGAGPTGVE------LAGAIAELTRGEMRKEFRNVDTTKAKVILIEGMDRVLPPFPPEL 217
Query: 311 AADKNSDKYILELQPAIKGLESQIFEADLV---------------LWTVGSKPLLPHVEP 355
+A L + K + + I E +V LW G K
Sbjct: 218 SAQAQVQLEGLGVTVQTKAMVTDIQEDRVVFKTGDDLHEIPSRTTLWAAGVK------AS 271
Query: 356 PNNRLHDLPLNARGQAETDET--------LCVKGHPRIFALGDSSALRDSSGRPLPATAQ 407
P +L L R AE D L + P ++ LGD + D +G PLP A
Sbjct: 272 PLGKL----LAQRTGAELDRIGRVIVQPDLQLPTDPNVYVLGDLAHCPDQAGNPLPGVAA 327
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 462
VA QQ + G L + +P+ PFR+Q+ G M ++GRN A + G+ L G
Sbjct: 328 VAMQQGAYLGKALKRRLKSQPVDPFRYQDFGSMAVIGRNAAVAR---LAGIRLSG 379
>gi|381183137|ref|ZP_09891898.1| hypothetical protein KKC_07562 [Listeriaceae bacterium TTU M1-001]
gi|380316976|gb|EIA20334.1| hypothetical protein KKC_07562 [Listeriaceae bacterium TTU M1-001]
Length = 403
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/389 (23%), Positives = 168/389 (43%), Gaps = 52/389 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GGL T +L+ + +++LV++++ L+E +G ++ +
Sbjct: 3 KPKIVILGAGYGGLKTLKKLQ----HANTGAELVLVNKNDYHHETTWLHEAAAGTIEPEQ 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ ++ + F +D V + + TV L + V YD+L+++
Sbjct: 59 LIYPLDKVIQPSKTTFIQDTVVKINKDEK-------------TVSLANNGDVSYDYLLIA 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG+E + + G E+A +++E ++ R + E K + + TI
Sbjct: 106 LGSEAETFGISGLKEYALTITSVESVKKI--------RAHIEAQFAKWKTEQKDELLTII 157
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-------RCI----RRVGEFEASVKQPESGAI 307
G L L+ R +LV Y V C+ + + +F+A + G +
Sbjct: 158 VGGAGFTGIEFLGELTNRIPELVKMYDVPKEKVRIVCLEAAPKVLPQFDAKLVDYGVGVL 217
Query: 308 PNIAADKNSDKYILE-----LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + K + E ++ A E + +A ++W G + N+ +
Sbjct: 218 EDRGVEFLVGKPVKEATAEGVKYAASETEVKEIKAATIIWAAGVRG--------NSVIEA 269
Query: 363 LPL-NARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNL 420
RG+ + + L V G+ I +GD S + + ++ RP P TAQ+A QQAD A NL
Sbjct: 270 SGFEQGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPYPPTAQIAMQQADIAAINL 329
Query: 421 WA-AINDRPLLPFRFQNLGEMMILGRNDA 448
A+ D L+ F + G + +G NDA
Sbjct: 330 AKLAVGDTDLVDFEYHEKGTVCSIGDNDA 358
>gi|352106262|ref|ZP_08961313.1| NADH dehydrogenase [Halomonas sp. HAL1]
gi|350597910|gb|EHA14035.1| NADH dehydrogenase [Halomonas sp. HAL1]
Length = 432
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 112/433 (25%), Positives = 181/433 (41%), Gaps = 40/433 (9%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGG GGL A RL + + K+ +++L+D++ V+KP+L+EL +G +++
Sbjct: 4 PRIVIVGGGAGGLALATRLGHTLGKR-KRAEIVLLDRNTTHVWKPLLHELATGVLNS--- 59
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSD---HLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+ D ++ F++ + L D + P+ G VL L YD+LV
Sbjct: 60 SMDEVDYRGHSSAHFYRYQRGSLTGVDRQQQVLRLAPVKDEDGAEVLPARELT--YDYLV 117
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
++LG+ PG AE + + A R + F R + + Q +
Sbjct: 118 MALGSVSNDFGTPGVAEHCHFIDSPQQAKAFQRDMIN----TFLRYTDPTLRQHTQLTIG 173
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR----VGEFEAS----------VKQP 302
I G G E A ++ A + ++ Y V I V EA+ V Q
Sbjct: 174 IVGGGATGV-ELAAELFDASR--MLNAYGVTAIDHQHISVHLLEAAPRLLPGLSDRVSQT 230
Query: 303 ESGAIPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
+ + ++D I E Q + + + D+ +W G K PP
Sbjct: 231 VKTELEKMGVTVHTDTAIKEAQAHRLITDNGEEIKTDINVWAAGIKA------PPFLTEL 284
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 421
L N + Q E +L RIFALGD ++ +P AQ A QQA NL
Sbjct: 285 GLTTNKKNQIEVKRSLQSVDDERIFALGDCASCPMGDEGTVPPRAQAAHQQAKLLAKNLV 344
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAA---VSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
+ D+PL FR+++ G ++ L R DA + +G+ L+G + A Y
Sbjct: 345 NQLEDKPLQDFRYRDHGSLVSLARYDAVGNLMRSGASKGLFLEGWLARQAYASLYRTHQL 404
Query: 479 TDEHRLKVGVSWL 491
+ K G+SWL
Sbjct: 405 SIHGPTKTGLSWL 417
>gi|171322700|ref|ZP_02911453.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria MEX-5]
gi|171091956|gb|EDT37415.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria MEX-5]
Length = 433
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 157/390 (40%), Gaps = 48/390 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + V ++D+S V+KPML+ + +G D +
Sbjct: 9 RIVIVGGGIAGLQLATRLGERLGRSGRA-LVTVIDRSPTHVWKPMLHTIAAGTRDVQQQQ 67
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
F + G + +K L + V + G +LL++ + EYD L+L+LG
Sbjct: 68 VIFLAHARDHGYTYQPGELKGLDRARRR-VQLREIRSPEGELLLDAREL-EYDVLILALG 125
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ VPG E + + + A + L R+ R E I
Sbjct: 126 SQANDFGVPGVREHCYFIDSQQQAETFNEALRMRVFRSIARDEP--------FRVAIVGA 177
Query: 261 GTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
G G AA L+V A + +L L R + F + + I
Sbjct: 178 GATGVELAAELSRLLEVAQAYGDATVRERLQLTLLESGPRILAAFPPRISASAQRRLEQI 237
Query: 311 -----------AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
+AD N Y + EADL++W G K
Sbjct: 238 GIHVLTSTRVTSADSNGFHYG----------DGSFAEADLMVWAAGVK-----ASDFMQA 282
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGW 418
L L N Q TL +FA+GD ++L+ D RPLP TAQVA QQA+
Sbjct: 283 LGGLDTNRANQIMVGPTLQATADEHVFAIGDCASLQPDGRERPLPPTAQVATQQAEHLAK 342
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+L A ++ +PL PF F + G ++ + DA
Sbjct: 343 HLPAWLDGKPLPPFAFHDFGALVSISDYDA 372
>gi|395234728|ref|ZP_10412949.1| hypothetical protein A936_13699 [Enterobacter sp. Ag1]
gi|394730429|gb|EJF30278.1| hypothetical protein A936_13699 [Enterobacter sp. Ag1]
Length = 400
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 165/399 (41%), Gaps = 57/399 (14%)
Query: 79 KPRICILGGGFGGLYTAL---RLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +I ILG GF G++ AL RL ++ +DD + VL R +P YE EV
Sbjct: 2 QQKILILGAGFAGMWAALSAARLVAMHNRDDIEIAVLAPQPELRV--RPRFYET---EV- 55
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLL-----CP--SDHLGVNGPMACTHGGTVLLESGL 188
A +AP L TGV F K + + C D G + P
Sbjct: 56 ASLVAP-LQPLFDVTGVTFVKGEAQRIDSVNQCVWYRDQQGNSTPR-------------- 100
Query: 189 IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIV 248
+YD LVL+ G+ K D++ GAAE AF LE A R+++ +S+L ++ IV
Sbjct: 101 --QYDRLVLATGSNLKRDLIDGAAEHAFDLDQLESALRLEQHISDLAQQPESEARNTVIV 158
Query: 249 QAINVETTICPTGTPGNREAAL------KVLSARKVQLVLGYFVRCIRRVGEFEASVKQP 302
T PG A L +V+ + + G + R +R V +
Sbjct: 159 CGGGFTGIEMATELPGRLRAVLGKETNARVIVVERGDKIGGRYSRELRDV----IATASE 214
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT-VGSKPLLPHVEPPNNRLH 361
E G + N+D ++ + +I + ++L V + PL + P ++
Sbjct: 215 ELG----VEWRLNTDVREIDANGIVLADGERIASSTVILTAGVQASPLTAQINAPRDK-- 268
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNL 420
+G+ D L V+G P IFA GD + A D G T Q A F G+N+
Sbjct: 269 ------QGRLHVDAFLRVEGQPAIFATGDVARAETDEQGNLALMTCQHAIMLGRFVGYNV 322
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVT 459
A++ D LP+R N + LG A + + + VT
Sbjct: 323 AASLLDVTPLPYRQINYVTCLDLGGWGAVFTEGWEQKVT 361
>gi|194367376|ref|YP_002029986.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Stenotrophomonas maltophilia R551-3]
gi|194350180|gb|ACF53303.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Stenotrophomonas maltophilia R551-3]
Length = 426
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/393 (22%), Positives = 166/393 (42%), Gaps = 52/393 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + ++GGGF GL+ L ++ ++ LVD+ +F+P+LY++ + + A
Sbjct: 4 ERVPHLVVVGGGFAGLWATRALAR------ERIRITLVDRRNHHLFQPLLYQVATAGLSA 57
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA +L + + + R+ + D + + G ++YD L+
Sbjct: 58 PDIAAPLRHILGHQ--RNVEVRLGEVVTID----------KQARQIRMADGSTLDYDTLL 105
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLE-EKGIVQAINVET 255
L+ GA A+ A TL+DA + RKL FER E E + +
Sbjct: 106 LATGATHAYFGNDQWADDAPGLKTLDDAIALRRKLLL----AFERAEAEPDPAKKAAWLS 161
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--------AI 307
G P E L+ ++ R + A V+ E+G +
Sbjct: 162 FAVVGGGPTGVE-----LAGTLAEIARHTLRNEFRHIDPASAKVRLVEAGPRVLSSFPEV 216
Query: 308 PNIAADKNSDKYILELQPA--IKGLESQIFE-------ADLVLWTVGSKPLLPHVEPPNN 358
++ A + +K +E+ + ++SQ F+ A V+W G P
Sbjct: 217 LSLKARRQLEKLGVEVLTGTPVSDIDSQGFKLGDQFVPARTVVWAAGV------AASPLA 270
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
R D+PL+ G+ + L + HP +F GD +AL ++G+P+P A A Q +
Sbjct: 271 RTLDVPLDRAGRVQVQPDLTLPDHPELFVAGDLAALNQANGKPVPGVAPAAKQMGKYVAE 330
Query: 419 NLWAAINDRPLL-PFRFQNLGEMMILGRNDAAV 450
+ A ++++P PF++ + G + +GR A V
Sbjct: 331 VIRARLHNKPAPGPFKYADFGNLATIGRMAAIV 363
>gi|383785150|ref|YP_005469720.1| NADH dehydrogenase [Leptospirillum ferrooxidans C2-3]
gi|383084063|dbj|BAM07590.1| NADH dehydrogenase [Leptospirillum ferrooxidans C2-3]
Length = 467
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 101/434 (23%), Positives = 186/434 (42%), Gaps = 60/434 (13%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P + RI +LG GFGGLYTA+ L+ + + ++ ++D+ F+F PML+ +G +
Sbjct: 29 PAVQPHRILVLGSGFGGLYTAVYLDRYL-KGLPDVRITVIDKHNFFLFTPMLHAAATGGL 87
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ IA + F K R+ H + ++ + + YD
Sbjct: 88 EPRYIAHSIRKI-------FRKTRI-------HAHIGEVLSIDLEKKTVSTQHRTMAYDD 133
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERL---EEKGIVQAI 251
LV+SLG+ + E F +L+DA ++ + R FE+ ++ I ++
Sbjct: 134 LVISLGSRTNFMNLEDRLEGVFTLKSLKDAAVINNHVI----RMFEKAYWEDDPEIRKSY 189
Query: 252 NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI---- 307
+ T L + R++ G RR+ + E V E+ +
Sbjct: 190 LTFVVVGGGPTGVELAGELHEYATRELLRDFG------RRIDKSEIRVILVEATSRILPM 243
Query: 308 --PNIAADK----NSDKYILELQPAIKGLESQIFE--------ADLVLWTVGSK--PLLP 351
PN++ + S + L+ ++G ++Q + + ++W G K PL+
Sbjct: 244 LPPNLSLEALERLRSIGIDVLLETRLEGYQNQKVQLVGGDEIPSTTLVWAAGVKTNPLVA 303
Query: 352 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAF 410
+ DL + G+ + + TL P ++ +GD++ ++ SG P P TAQ A
Sbjct: 304 AL--------DLEKDGIGRIKVNGTLESTKKPHVWVVGDNAHSMNPHSGMPYPPTAQTAV 355
Query: 411 QQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
+QA N+ A + RP F +++G + +G N A +S + +TL G +G
Sbjct: 356 RQAKVCAHNIVARLRKRPEKLFSHEHVGGFVSIGDNYALLS---AKQLTLTGMVGWFLWN 412
Query: 471 LAYLIRLPTDEHRL 484
L Y+ +LP +RL
Sbjct: 413 LVYIHKLPIIRYRL 426
>gi|56751412|ref|YP_172113.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 6301]
gi|56686371|dbj|BAD79593.1| type 2 NADH dehydrogenase [Synechococcus elongatus PCC 6301]
Length = 444
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 113/418 (27%), Positives = 170/418 (40%), Gaps = 79/418 (18%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPR+ ++GGGFGGLYTAL L ++ L+D+ +F+P+LY++ +GE+ +
Sbjct: 7 KPRVVVIGGGFGGLYTALNL------GKTSVELTLIDKRNFHLFQPLLYQVATGEISPGD 60
Query: 139 I-APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I AP A + N + V + P H G IVEYD+LV+
Sbjct: 61 IPAPLRAIVGRNPNTRVILGEVTDIDPQAHWVRVGDE--------------IVEYDYLVV 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS-ELERRNFERLEEKGIVQAINVETT 256
+ GA FA T+EDA + R++ LE+ E E+ Q + T
Sbjct: 107 ATGASHHYFGNDQWQPFAPGLKTVEDALEMRRRIYFALEQAEQESDPER---QQAWLTFT 163
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI------PNI 310
I G G L+ +L G + R V +A V E P +
Sbjct: 164 IVGAGPTGVE------LAGAIAELTRGEMRKEFRNVDTTKAKVILIEGMDRVLPPFPPEL 217
Query: 311 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP------ 364
+A L + K + + I E D V++ G + LH++P
Sbjct: 218 SAQAQVQLEGLGVTVQTKAMVTDIQE-DRVVFKTG------------DDLHEIPSRTTLW 264
Query: 365 ------------LNARGQAETDET--------LCVKGHPRIFALGDSSALRDSSGRPLPA 404
L R AE D L + P ++ LGD + D +G PLP
Sbjct: 265 AAGVKASPLGKLLAQRTGAELDRIGRVIVQPDLQLPTDPNVYVLGDLAHCPDQAGNPLPG 324
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 462
A VA QQ + G L + +P+ PFR+Q+ G M ++GRN A + G+ L G
Sbjct: 325 VAAVAMQQGAYLGKALKRRLKSQPVDPFRYQDFGSMAVIGRNAAVAR---LAGIRLSG 379
>gi|149183074|ref|ZP_01861526.1| NADH dehydrogenase [Bacillus sp. SG-1]
gi|148849203|gb|EDL63401.1| NADH dehydrogenase [Bacillus sp. SG-1]
Length = 410
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 97/398 (24%), Positives = 163/398 (40%), Gaps = 65/398 (16%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KPRI +LG G+GGL T RL+ +D+ +++L+++++ L+E +G +
Sbjct: 7 RKPRIVVLGAGYGGLMTVTRLQKQFSKDE--AEIVLINKNDYHYETTWLHEASAGTLHHD 64
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
++ D++ V F + V + + + T G VEYD+LV+
Sbjct: 65 KVRYDIKDVIDGHKVNFMQTTV------EDIKTDAKKVITANGE--------VEYDYLVI 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG-----IVQAIN 252
+LGA + + G E AF + + A R R+ E + ++ EEK IV
Sbjct: 111 ALGAVSETFGIKGLHEHAFMIANINSA-RQLREHIEYQFATYKNEEEKKDERLTIVVGGA 169
Query: 253 VETTICPTGTPGNR--------------------EAALKVLSARKVQLVLGYFVRCIRRV 292
T I G GNR EAA +L +LV + ++
Sbjct: 170 GFTGIEFLGELGNRIPELCKEYDVDFKKVRIVCVEAAPMILPGFDPELVKYARAKLEKKG 229
Query: 293 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 352
EF E+ A ++ K D E + +A ++W G + P
Sbjct: 230 VEFRIGTPLKEATA-NSVIISKGED-------------EVEEIQAGTIVWAAGVRG-NPV 274
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQ 411
+E N R + + ++ L GH +F +GD S + + + RP P TAQ+A Q
Sbjct: 275 IEKSGIE------NMRARVKVEKDLRAPGHDNVFVIGDCSLMINEETERPYPPTAQIAMQ 328
Query: 412 QADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 448
Q + N+ A + + L F G + LG +DA
Sbjct: 329 QGETCARNITALMKGNDALEQFTPDIKGTVCSLGEDDA 366
>gi|91777304|ref|YP_552512.1| putative NADH dehydrogenase [Burkholderia xenovorans LB400]
gi|91689964|gb|ABE33162.1| Putative NADH dehydrogenase [Burkholderia xenovorans LB400]
Length = 449
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 158/372 (42%), Gaps = 48/372 (12%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV LVD++ ++KP+L+E+ +G +D + +A G +F + + L ++
Sbjct: 34 RAQVTLVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELTGLDRANR 93
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
+ G + G +L E L EYD L++++G+ V GA EF+ T+ A R
Sbjct: 94 RLMLGTVLDDDGAELLPEREL--EYDTLIIAIGSTTAFFGVKGAPEFSLALDTVSQAERF 151
Query: 228 DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKV-----------LSAR 276
++L R ++ E VE+ GTP E ++V LSA
Sbjct: 152 RKRLIAACMRAEHQVHEP-------VESA---PGTPSTDEPRIQVAIVGGGATGVELSAE 201
Query: 277 ---KVQLVLGYFVRCI---------------RRVGEFEASVKQPESGAIPNIAADKNSDK 318
Q++ Y + + R + + V + + + + +
Sbjct: 202 LRNTAQVLSAYGLHKLDPRHDVGIVLIEAGPRILPALQERVSTATAELLTKLGVKLMTSE 261
Query: 319 YILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETL 377
+ E+ P I+ + ADL +W G K P + + L LP+N GQ TL
Sbjct: 262 TVAEVAPGLIRTASGKTVRADLTVWAAGIKA--PAIL---SELDGLPVNRLGQLVVRRTL 316
Query: 378 CVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 436
+ IFALGD +A + R +P AQ A QQA F L A ++ RPL F +++
Sbjct: 317 QTEIDDDIFALGDCAACPWPGNERNVPPRAQAAHQQASFLMKALTARLDGRPLPEFTYRD 376
Query: 437 LGEMMILGRNDA 448
G ++ LG A
Sbjct: 377 FGSLVSLGHFSA 388
>gi|434386416|ref|YP_007097027.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
gi|428017406|gb|AFY93500.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
Length = 441
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 94/422 (22%), Positives = 173/422 (40%), Gaps = 43/422 (10%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I I+G GFGGL A L ++LL+D+ F P+LY++ + +++ +I
Sbjct: 7 IAIVGAGFGGLQAAQSLAHC------GKEILLIDRVNYHTFVPLLYQVATAQLEPEQIVY 60
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+L + F L+ + + ++ + T + + YD+LVL+ G+
Sbjct: 61 PVRTILRRSRRCHF-----LMAEVEKIDLSARIITT--------DRIEINYDFLVLATGS 107
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFER--LEEKGIVQAINVETTIC 258
+ + VPGA E+AF ++L DA + DR L LE + E L + ++ + +
Sbjct: 108 KSQYLGVPGAKEYAFSVNSLPDAVALRDRLLECLEAASIEADPLRREQLLTFVIIGGGAT 167
Query: 259 PTGTPGNREAALK--------VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
T G + L+ V+L+L R + E + + +
Sbjct: 168 GTEVSGALVELFRSRIRHEYPTLNLHHVKLIL--VQSGDRLLSELSPKLGIYTQKYLHKL 225
Query: 311 AADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
D + + A+ + QI +WT G + +P + +R L R
Sbjct: 226 GVDIRFSTQVARITTEAVYLHDRQIIPTKTAIWTAGVEATMPELSEDWSRGQKNKLRVRP 285
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
++ E + ++A+GD + + D G+ A A QQ N+ + + +R
Sbjct: 286 TLQSIE------YDNVYAIGDVAYI-DRDGKGSSGVAPEALQQGVTVARNITSQLQNRQT 338
Query: 430 LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVS 489
PFR+ N G + I+G ++G T G + +L+ LP +RL V ++
Sbjct: 339 QPFRYFNKGRLAIIGCRSGVGD---IQGWTFTGLLAWLIWLGVHLVYLPGFRNRLLVLLT 395
Query: 490 WL 491
WL
Sbjct: 396 WL 397
>gi|399020445|ref|ZP_10722575.1| NADH dehydrogenase, FAD-containing subunit [Herbaspirillum sp.
CF444]
gi|398094860|gb|EJL85214.1| NADH dehydrogenase, FAD-containing subunit [Herbaspirillum sp.
CF444]
Length = 428
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 91/389 (23%), Positives = 159/389 (40%), Gaps = 52/389 (13%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+G GFGGL A L K + ++D+S +F+P+LY++ + + A I
Sbjct: 2 PHVIIVGCGFGGLAAARALAD------AKVDITIIDRSNHHLFQPLLYQVATAGLSAPAI 55
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ +LA ++ L+ + V T+ LE G + YD+L+++
Sbjct: 56 SAPIRSILATQ-----RNLTSLMAAVSKIDVTRK-------TIALEDGSEIAYDYLIVAA 103
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG--IVQAINVETTI 257
G+ A A TL DA + R++ FER E + + +A + T+
Sbjct: 104 GSTHSYFGHDEWAPLAPGLKTLADAFDIRRRI----LMAFERAEREADPVRRAEWLTFTV 159
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCI-------------RRVGEFEASVKQPES 304
G G A + AR + G F R R +G + + +
Sbjct: 160 IGAGATGVEMAGTLIEIAR--HTLRGEFRRIDPQQTKVVLLEGSERVLGAYPPDLSEKAR 217
Query: 305 GAIPNIAADKNSDKYILEL-----QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
+ + D + + + + A +G E Q + V+W+ G P +
Sbjct: 218 TQLLKLGVDVRTGSRVTHIDEECVRYADQGGE-QRLASRTVIWSAGV------AASPLGK 270
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
++PL+ G+ L + HP +F +GD +A S G+P+P + A Q A N
Sbjct: 271 SLNVPLDRAGRVIIGSELSIPDHPEVFVIGDLAAA-ISDGKPVPGVSPAAKQMGRVAARN 329
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ IN +PL F +Q+ G + +GR A
Sbjct: 330 ILNRINGKPLESFVYQDYGSLATIGRKAA 358
>gi|374375800|ref|ZP_09633458.1| NADH dehydrogenase (ubiquinone) [Niabella soli DSM 19437]
gi|373232640|gb|EHP52435.1| NADH dehydrogenase (ubiquinone) [Niabella soli DSM 19437]
Length = 431
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 112/421 (26%), Positives = 170/421 (40%), Gaps = 59/421 (14%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKPMLYELLSGE 133
D+ ++ ++GGGF GL +LV Q KP V LVD++ F P+LY++ +G
Sbjct: 2 DQSSKKVIVIGGGFAGL-------NLVMQLKNKPGFDVTLVDKNNYNFFPPLLYQVATGF 54
Query: 134 VDAWEIAPRFADLL-ANTGVQF-FKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE 191
++ I+ F L V F D +K+L P ++ V+L +G +
Sbjct: 55 LEPSSISYPFRRFLRGKHNVHFRMADLLKIL-PDEN-------------KVILSNGELA- 99
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI 251
YD+LVL+ GA + + A P TL DA + L +RLEE +Q +
Sbjct: 100 YDYLVLATGAASNFFGLENVEQHAIPMKTLSDALYMRNTL-------LDRLEEATRIQDL 152
Query: 252 N----VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI 307
+ + T + P E + R + Y R+VG+ V ++
Sbjct: 153 DRIKKLATIVVAGAGPTGVELSGMFAEMRIKIVQKDYPELAGRQVGKIYL-VDGGKAVLG 211
Query: 308 PNIAADKNSDKYILELQPAIKGLESQI--FEADLVLW----TVGSKPLLPHVEPPNNRLH 361
P ++ K LE I L + + F+ D V T+ + L+
Sbjct: 212 PMSEQSQHYSKESLEKLGVIIKLGTTVKDFKDDTVFLSDGTTIATTTLIWAAGVTAQTFE 271
Query: 362 DLPLNARGQAE---TDETLCVKGHPRIFALGDSSALRDSSGRP--LPATAQVAFQQADFA 416
+P A G+A D + G I+ALGD+ P P AQVA QQA
Sbjct: 272 GIPTEAYGRARRMLVDAFNKINGFSNIYALGDTCIQTTDPAFPNGHPQLAQVAIQQAKNL 331
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
G NL R PF + + G M I+GRN A L+ P H +A+LI
Sbjct: 332 GKNLLLPEGSRK--PFIYNDKGSMAIIGRNKAVAD--------LEKPKLHFNGFIAWLIW 381
Query: 477 L 477
L
Sbjct: 382 L 382
>gi|124024083|ref|YP_001018390.1| NADH dehydrogenase, FAD-containing subunit [Prochlorococcus marinus
str. MIT 9303]
gi|123964369|gb|ABM79125.1| NADH dehydrogenase, FAD-containing subunit [Prochlorococcus marinus
str. MIT 9303]
Length = 503
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 103/443 (23%), Positives = 177/443 (39%), Gaps = 64/443 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + I+GGGF G+ L + + +V L+D+ +F+P+LY++ +G V
Sbjct: 18 RRAPHVVIIGGGFAGVRACKALA------NTEVRVTLIDKRNFNLFQPLLYQVATGLVSK 71
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A L+ VQ V L P D ++ + + YD+L
Sbjct: 72 GDVATPLRQLVGRQFNVQVLLGEVTQLNPQDKQ--------------IVFNNKSLSYDYL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAIN--V 253
VL+ G+ FA P LE A + R+L + E+ + Q + V
Sbjct: 118 VLATGSGSTYFGHEEWRSFAPPMKILEHAEEIRRRLL-MAMEQAEQTPDPNARQFLQSVV 176
Query: 254 ETTICPTG------------TPGNREAALKVLSARKVQLVLGYFV----RCIRRVGEFEA 297
PTG +RE K L+ + ++ Y V R +R + E
Sbjct: 177 VVGAGPTGCEMAGAVSELMRNAMSRE--FKQLNPDQTKI---YLVDPGERVLRAMPEM-- 229
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLES----QIFEADLVLWTVGSKPLLPHV 353
+ + + ++ + + +QP + + Q +A V+WT G +P H+
Sbjct: 230 -LSKSARTTLESLGVEMVFKGRVQSMQPGEVMISTPNGDQCLQAATVIWTAGVRP--SHL 286
Query: 354 EPPNNRLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR-PLPATAQVA 409
L D L+ G+ + V GHP I +GD + R ++ + PLP A A
Sbjct: 287 ---GRNLADSIGCELDKGGRIVVEPDFAVAGHPEIRVVGDLCSYRHTTNQTPLPGMAGPA 343
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
Q F G ++ A ++ F + + G M +L R A + G G IG
Sbjct: 344 TQAGGFVGKDIAALVSGSSRPTFNWFDFGSMAVLDRVAAVAD---LRGFKFSGGIGWMCW 400
Query: 470 KLAYLIRLPTDEHRLKVGVSWLT 492
LA+L +P E+R+ + WL
Sbjct: 401 ALAHLAFMPNPENRITLLFKWLV 423
>gi|410479624|ref|YP_006767261.1| NADH dehydrogenase, FAD-containing subunit [Leptospirillum
ferriphilum ML-04]
gi|206603832|gb|EDZ40312.1| NADH dehydrogenase [Leptospirillum sp. Group II '5-way CG']
gi|406774876|gb|AFS54301.1| NADH dehydrogenase, FAD-containing subunit [Leptospirillum
ferriphilum ML-04]
Length = 452
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 111/430 (25%), Positives = 185/430 (43%), Gaps = 56/430 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLL--VDQSERFVFKPMLYELLSGEV 134
+K RI ILG GFGGLYTA+ L+ + K P V + +D+ F+F PML+ +G +
Sbjct: 16 EKPYRILILGAGFGGLYTAVYLDRFL---KKHPNVWITVIDRRNYFLFTPMLHSTATGSL 72
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ IA + T V V+ + + + + H + +D
Sbjct: 73 EPRYIAHSVRKIFRRTRVHAHIGEVRNIDLQNKI-----VQTEHRA---------LPFDD 118
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE 254
LV+SLG+E + E F +L+DA ++ L + + + + + A+
Sbjct: 119 LVISLGSETNFYGLESRLENIFTLKSLKDASAINNHLIRMFEKAYWEEDSEARRAAL--- 175
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR---RVGEFEASVK----QPESGAI 307
T + G P E A ++ +L+ + R + RV EA+ K PE ++
Sbjct: 176 TFVVVGGGPTGVELAGEIHEYAHRELLRDFGRRISKDEIRVILVEATGKILPSLPEKLSL 235
Query: 308 PNI-AADKNSDKYILE--LQPAIKGLESQI----FEADLVLWTVGSKPLLPHVEPPNNRL 360
+ K + ILE L+ KG+ S A+ ++W G + N +
Sbjct: 236 EALDRLRKIGIEVILEGRLEEYRKGVMSLSGKPPIRAETLVWAAGVRT--------NPLV 287
Query: 361 HDLPLNARGQAE-----TDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQAD 414
LP GQ T E+L ++ ++ +GD +S L GRP P TAQ A +QA
Sbjct: 288 ASLPFEKDGQNRIRVKGTLESLSME---HVWVVGDNASCLNPWEGRPYPPTAQTAVRQAR 344
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
N+ A ++ +P F ++G + +G N A +S + TL G +G L Y+
Sbjct: 345 TVAQNIVARLSRKPEKIFAHNHVGGFVSIGDNYALLS---AKQFTLSGILGWFLWNLVYI 401
Query: 475 IRLPTDEHRL 484
+LP +RL
Sbjct: 402 HKLPIIRYRL 411
>gi|422514058|ref|ZP_16590179.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL087PA2]
gi|313807024|gb|EFS45522.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL087PA2]
Length = 460
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 145/355 (40%), Gaps = 39/355 (10%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R AN G P H
Sbjct: 51 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAANNG------------PHTHF-- 96
Query: 171 NGPMACTHG-----GTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
AC G V +++G V YD+LVLS G PGAAE ++ T +
Sbjct: 97 --RRACVTGIDTENRIVEVDNGDPVSYDYLVLSQGVGANFFGTPGAAENSYTIYTRASSL 154
Query: 226 RV-DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNRE-----AALKVLSARKVQ 279
R D + LE + +R + ++ T + GT + A +S +V
Sbjct: 155 RARDAIFTYLEDLDTQRDKTFDVIIVGGGPTGVEMAGTLAEMKSIGIPAIFPDVSTDRVH 214
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEAD 338
+ L + + F+ +++ + D ++ I E+ + ++ + Q AD
Sbjct: 215 VTLVEMANHL--LMPFDPALRHYTRRQLQKRGVDVRTNTAIAEVREDSVLLKDGQTLPAD 272
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 398
+V+W G + H N G+ TD TL VKG RIFA+GD + ++
Sbjct: 273 MVIWAAG---VGAHKSVTN---WGFEQGRGGRIATDGTLLVKGQDRIFAVGDGAI---NT 323
Query: 399 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 453
P P AQ A Q + + PL F + + G M +GRN A V S
Sbjct: 324 EDPKPQLAQPAIQGGECVARQIVHLELGEPLEKFEYNDKGTMATIGRNSAVVQLS 378
>gi|358457823|ref|ZP_09168038.1| NADH dehydrogenase (ubiquinone) [Frankia sp. CN3]
gi|357078841|gb|EHI88285.1| NADH dehydrogenase (ubiquinone) [Frankia sp. CN3]
Length = 460
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 110/453 (24%), Positives = 183/453 (40%), Gaps = 92/453 (20%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI ++GGG+ G+YTALRL + + V +V+ + ++P L E +G ++
Sbjct: 6 EPRILVVGGGYVGMYTALRLRRRLRPGEA--SVTVVEPNSYMTYQPFLPEAAAGNLEPRH 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ +L G + RV + + L T GG E L YD LVL+
Sbjct: 64 VVVPLRKVL--RGCEMISGRVTSIAHAYRLAT----VRTVGGD---EYDL--GYDILVLA 112
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
G+ + +PG A+ F ++ +A + K+ IN
Sbjct: 113 PGSVARTLPIPGLADLGVGFKSVAEAIYLRNKV-------------------INRIDAAA 153
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD----- 313
T P R AL + +G I + E E + + P+I+ +
Sbjct: 154 STRDPVERVRALTFV-------FIGGGYAGIEALAELE-DMSRYACSYYPDISPNDLRWV 205
Query: 314 --KNSDKYILELQPAI----------KGLESQI-------------------FEADLVLW 342
+ +D+ + E+ PA+ +G+E ++ F+AD ++W
Sbjct: 206 LVEATDRILPEVSPAMGLYTVKQLEHRGIEVRLSRRVTSLVNGHVELDDGTEFDADTIVW 265
Query: 343 TVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR 400
T G + P+L H DLPL+ RG+ + L V+G P + GD +A+ D +G
Sbjct: 266 TAGVRANPVLGHT--------DLPLDERGRLRANPFLQVEGVPDAWTAGDCAAVPDLTGP 317
Query: 401 PLPAT---AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG 457
P T AQ A +QA NL A + P+ P+ + G + LG + V G
Sbjct: 318 PGATTSPSAQHAVRQARRLADNLVAHLRREPIQPYEHRYAGSVASLGLHRGVAD---VYG 374
Query: 458 VTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
+ L G + +L RLPT + +V W
Sbjct: 375 IKLHGWPAWFMHRTYHLSRLPTFNRKARVLADW 407
>gi|83746521|ref|ZP_00943572.1| NADH dehydrogenase [Ralstonia solanacearum UW551]
gi|207743833|ref|YP_002260225.1| nadh dehydrogenase, membrane flavoprotein fad nad ubiquinone
electron transport [Ralstonia solanacearum IPO1609]
gi|83726852|gb|EAP73979.1| NADH dehydrogenase [Ralstonia solanacearum UW551]
gi|206595233|emb|CAQ62160.1| nadh dehydrogenase, membrane flavoprotein fad nad ubiquinone
electron transport [Ralstonia solanacearum IPO1609]
Length = 441
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 170/411 (41%), Gaps = 39/411 (9%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL-CPS 165
+ +V+LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKSLDRAA 96
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ V+G + G VL E + YD LVL++G+ VPG AE A A
Sbjct: 97 KTITVSGCVDAD-GTEVLPERA--IAYDMLVLAIGSVTHFFGVPGTAEHAIALDAASQAE 153
Query: 226 RVDRKLSELERRNFERLEEKGIVQA-INVETTICPTGTPG--------NREAALKVLSAR 276
R RKL R + G+ A V+ I G G N L
Sbjct: 154 RFRRKLIAACMR-----AQNGVGDARAQVDIAIVGAGATGVELSAELRNTAHVLAAYGLH 208
Query: 277 KVQLVLGYFVRCI----RRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLE 331
K+ + + I R + V + + + D + + ++E+ A+K
Sbjct: 209 KLDPLRDIRIHLIEGSPRILAALSERVSAETTKLLHKLNVDVITGERVVEVTDSAVKTGS 268
Query: 332 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD- 390
+ ADL +W G + P LPL+ GQ TL V+G I+A GD
Sbjct: 269 GKSIPADLTVWAAGIRA------PAILGELGLPLSRLGQVVVSRTLQVEGDDSIYAFGDC 322
Query: 391 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
+S + +P AQ A QQA + L + +P+ PF F++LG ++ LG A
Sbjct: 323 ASCPWPEASTSVPPRAQAAHQQATYLYKALLRRLQGKPVEPFGFKDLGSLVSLGHFSAV- 381
Query: 451 SPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLTKSAIDSV 499
G + G IG + + RL T +R+ V + + A+D+V
Sbjct: 382 ------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFVRMALDTV 426
>gi|186473238|ref|YP_001860580.1| NADH dehydrogenase [Burkholderia phymatum STM815]
gi|184195570|gb|ACC73534.1| NADH dehydrogenase [Burkholderia phymatum STM815]
Length = 448
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 153/367 (41%), Gaps = 43/367 (11%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
QV LVD+ ++KP+L+E+ +G +D + +A G +F + + +G
Sbjct: 36 QVTLVDRYPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGEL--------IG 87
Query: 170 VNGPMACTHGGTVLLESGL------IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
++ + G VL + G ++EYD LV+++G+ V GA E++ T++
Sbjct: 88 IDRTVKTITLGRVLDDDGAELLPERVLEYDTLVIAIGSTTHFFGVKGAPEYSLALDTVQQ 147
Query: 224 ACRVDRKL----SELERRNFERLEEKGIVQAIN--VETTICPTGTPGNREAA-----LKV 272
A R ++L E + E +E + ++ I G G +A +V
Sbjct: 148 AERFRKRLIAACMRAEHQEHEPVESNPGASSTEPRIQVAIVGGGATGVELSAELRNTAQV 207
Query: 273 LSA---------RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL 323
LSA V +VL R + + V + + + + + E+
Sbjct: 208 LSAYGLHKLDPRHDVGIVL--IEAGPRILPALQERVSTATAELLQKLGVKLMVGETVAEV 265
Query: 324 QPAI-KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGH 382
P + + + ADL +W G K P +L LP+N GQ E TL
Sbjct: 266 APGVVRTASGKTVRADLTVWAAGIK-----APPVLGQLDGLPVNRLGQLEVRRTLQTAID 320
Query: 383 PRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 441
+FALGD +A + R +P AQ A QQA F L + RPL F +++ G ++
Sbjct: 321 ENVFALGDCAACPWPGNERNVPPRAQAAHQQASFLLRALGNRLEGRPLPEFTYRDFGSLV 380
Query: 442 ILGRNDA 448
LG A
Sbjct: 381 SLGHFSA 387
>gi|380512505|ref|ZP_09855912.1| NADH dehydrogenase (ubiquinone) [Xanthomonas sacchari NCPPB 4393]
Length = 430
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 98/398 (24%), Positives = 160/398 (40%), Gaps = 60/398 (15%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEV 134
+ + P + ++GGGF GL+ L + P ++ L+D+ +F+P+LY++ + +
Sbjct: 3 NTRVPHLIVIGGGFAGLWATRALA-------RTPLRITLIDRRNHHLFQPLLYQVATAGL 55
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT--VLLESGLIVEY 192
A +IA +L + +D V++ G + T V L G + Y
Sbjct: 56 SAPDIAAPLRQILRH------QDNVEVRL--------GEVVDIDKQTRQVRLADGQTLAY 101
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG--IVQA 250
D+L+++ GA A A TL+DA ++ R L FER E + +A
Sbjct: 102 DYLLVATGATHAYFGHDDWAAHAPGLKTLDDALQLRRHLLL----AFERAEAETDPAARA 157
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG----- 305
+ I G G A AR RR+ EA V+ E+G
Sbjct: 158 AWLSFAIVGGGPTGVELAGTLAEIARHT------LKHEFRRIDPAEARVRLIEAGPRVLS 211
Query: 306 AIP---NIAADKNSDKYILELQPAI---------KGLESQIFEADLVLWTVGSKPLLPHV 353
+ P + A K +K +E+ + L S A V+W G
Sbjct: 212 SFPEHLSAKAQKQLEKLGVEVLTGVPVADIDASGYRLGSTFVPARTVVWAAGV------A 265
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
P + PL+ G+ + L V GHP +F GD +A++ + GRP+P A A Q
Sbjct: 266 ASPLAKTLQTPLDRSGRVQVQPDLSVPGHPELFVAGDLAAVQQADGRPVPGVAPAAKQMG 325
Query: 414 DFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDAAV 450
L + D +PFR+ + G + +GR A V
Sbjct: 326 RHVADTLRRRLRGDTASVPFRYADYGNLATIGRMAAIV 363
>gi|52424236|ref|YP_087373.1| Ndh protein [Mannheimia succiniciproducens MBEL55E]
gi|52306288|gb|AAU36788.1| Ndh protein [Mannheimia succiniciproducens MBEL55E]
Length = 443
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 91/397 (22%), Positives = 163/397 (41%), Gaps = 46/397 (11%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
++ V+LVD+++ ++KP+L+E+ +G +D+ A + N F + + + ++
Sbjct: 28 QRANVVLVDRNQTHLWKPLLHEVATGVLDSETDAVSYRAHAHNHYFNFEQGSITRIDRTN 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G +++ + YD+LV+++G++ G AE + A R
Sbjct: 88 KYVELAPVTGQEGDVLVVARR--IPYDYLVIAIGSKSNDFNTKGVAENCIFLDSPNQALR 145
Query: 227 VDRKLSELERRNFER--LEEKG-------IVQAINVETTICPTGTPG--------NREAA 269
K+ EL + E LEE G +VQ V I G G N
Sbjct: 146 FQHKMLELFLKFSENNALEEIGEDDSKQRLVQDGKVNIAIVGGGATGVELSAELFNAAQH 205
Query: 270 LKVLSARKVQLVLGYFVRCIRRVGE---------FEASVKQPESGAIPNIAADKNSDKYI 320
L K+Q G+ + G+ +SV+Q + N+ + I
Sbjct: 206 LSSYGYGKIQS--GHLQVTLIEAGDRILPALPERISSSVQQE----LENLGVTVKTGTMI 259
Query: 321 LE-LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCV 379
E + + E + ADL++W G + V + L +N Q TL
Sbjct: 260 TEATEKCLITKEGEEINADLMVWAAGIR-----VSAITQQFDGLEVNRINQLNVKNTLQT 314
Query: 380 KGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGE 439
IFA+GD + L G+P+P Q A Q A G N+ A N++PL F + + G
Sbjct: 315 TVDDSIFAIGDCAFLLQKDGKPVPPRGQAANQMATICGQNIVALFNNKPLKDFHYFDKGS 374
Query: 440 MMILGRNDA--AVSPSFVEGVTLDGPIGHSARKLAYL 474
++ L + A ++ +T++G + +LAY+
Sbjct: 375 LVSLSKFTALGNITTGKRSSLTIEGRLA----RLAYI 407
>gi|225434562|ref|XP_002277505.1| PREDICTED: probable NADH dehydrogenase [Vitis vinifera]
gi|297745883|emb|CBI15939.3| unnamed protein product [Vitis vinifera]
Length = 499
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 116/455 (25%), Positives = 181/455 (39%), Gaps = 65/455 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K+KPR+ +LG G+ G L++ ++ V+ V VF P+L G ++
Sbjct: 60 KEKPRVVVLGSGWAGCRAMKGLDTNIYD------VVCVSPRNHMVFTPLLASTCVGTLEF 113
Query: 137 WEIAPRFADLLA----NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
+A A + TG FF + P +H V T+G V + Y
Sbjct: 114 RSVAEPIARIQPVISRETGSYFFLANCNRVDPDNH--VVHCQTLTNGANVREPWDFEISY 171
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------------SELERRNFE 240
D L+++ G+ P + G E AF + A + RKL SE E++
Sbjct: 172 DKLIIASGSMPLTFGIHGVEEHAFFLREVHHAQEIRRKLLLNLMLSDVPGISEAEKQRLL 231
Query: 241 RLEEKGIVQA---INVETTICPTGTPGNREAALK---VLSARKVQLVLGYFVRCIRRVGE 294
G + E + T R A +K ++ + +L F +R
Sbjct: 232 HCVVVGGGPTGVEFSGELSDFITRDVHQRYAHVKNYIHVTLIEANEILSSFDDRLRHY-- 289
Query: 295 FEASVKQPESGA--IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 352
A+ + +SG + I D DK IL G E L++W+ G P
Sbjct: 290 --ATRQLTKSGVRLVRGIVKDVKVDKIILN-----NGTE---VPYGLLVWSTGVGP---- 335
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP-LPATAQVAFQ 411
+ ++P + G+ DE L V IFA+GD S +S+G+P LPA AQVA +
Sbjct: 336 --SSFVKSMEVPKSPGGRIGIDEWLRVPSAQDIFAIGDCSGFLESTGKPVLPALAQVAER 393
Query: 412 QADF----------AGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAV---SPSFVEG 457
Q + AG D PF +++LG M LGR A V +G
Sbjct: 394 QGKYLAEQLNRIGKAGGGYANRARDMEFGEPFVYKHLGSMASLGRYKALVDLRQGKEGKG 453
Query: 458 VTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 492
++L G + AYL R+ + +RL V ++W T
Sbjct: 454 LSLAGFTSWIIWRSAYLTRVLSWRNRLYVAINWAT 488
>gi|348170728|ref|ZP_08877622.1| NADH dehydrogenase [Saccharopolyspora spinosa NRRL 18395]
Length = 446
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 108/440 (24%), Positives = 177/440 (40%), Gaps = 59/440 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PR+ I+GGG GL ALRL+ + + K V ++D ++P L E +G ++
Sbjct: 3 EPRVVIIGGGHVGLTLALRLQRKMKPGEAK--VTVIDTQPHMTYQPFLPEAAAGSLEPRH 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE--YDWLV 196
+ + L N C V+G T L G + YD LV
Sbjct: 61 VVVPLREALRN-------------CEVLTAQVSGIDHARQRLTATLGDGKVERFGYDMLV 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDAC--------RVDRKLSELERRNFERLEE---- 244
+ G+ + +PG AE F T+ +A R+D S + R RL
Sbjct: 108 VVPGSISRALPIPGLAEQGVGFKTIGEAIYLRNHVLSRLDIAASTTDERLRRRLLTFVFV 167
Query: 245 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 304
G I + R + +SA++++ VL + +G V P S
Sbjct: 168 GGGYAGIEAMAELESMARYAIR--SYPQVSAQEMRWVL------VEAMGRIMPEVSPPMS 219
Query: 305 GAIPNIAADK-------NSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
++ + K ++ A+ + F+AD V+WT G KP P
Sbjct: 220 EYTKGRLEERGIEVKLNTTAKSFVDGHVALS--DGDEFDADTVVWTAGVKP------HPM 271
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRP---LPATAQVAFQQA 413
DLP +A+G+ E L V+G +F+ GD +A+ D +S P +AQ A +QA
Sbjct: 272 LEDSDLPRDAKGRVECTARLQVRGTHNVFSAGDCAAVPDLTSSDPDALCSPSAQHAVRQA 331
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
N+ A + L+ ++ + G + LG A V GV L G + +
Sbjct: 332 KVLADNILAMLRGEQLVNYKHKYAGSVAGLGLFQGAAE---VHGVKLKGFPAWLLHRGYH 388
Query: 474 LIRLPTDEHRLKVGVSWLTK 493
L+R+PT H+ ++ WL +
Sbjct: 389 LMRMPTASHKARILGDWLME 408
>gi|332982514|ref|YP_004463955.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Mahella
australiensis 50-1 BON]
gi|332700192|gb|AEE97133.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Mahella
australiensis 50-1 BON]
Length = 600
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 164/381 (43%), Gaps = 34/381 (8%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ RI ILG GFGGL A + + ++D+ +L+V+QS V+ L+E+ V
Sbjct: 3 QKRIVILGAGFGGLTEAKAIHKYL-KNDQDVDILMVNQSPYHVYLTELHEVAGSRVSEDG 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I +L +T V+F +D +K + +H L+ +D+L+++
Sbjct: 62 ILVPIEHVLEHTKVRFVQDTIKTVDVDNH--------------KLISDEAEYPFDYLIVA 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFER--LEEKGIVQAINVET 255
G++P +PG E A +L+DA ++ + L E+ + E+ + K ++ +
Sbjct: 108 CGSQPAYFGIPGMKENALTLWSLDDAKKIHQHVLDVFEQASKEKDPAKRKELLTFVVGGG 167
Query: 256 TICPTGTPGNREAALKVLSAR----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIA 311
G +VL R K + L + + S+ + +
Sbjct: 168 GFTGVEMMGELRQWTEVLCKRYGIPKEERTLIIVEALPKILPNLPDSLIEKAKNYMTKKG 227
Query: 312 ADKNSDKYILELQPAIKGLES-QIFEADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNAR 368
+ +D I E++P I L+S + +A +WT G +K + ++ L R
Sbjct: 228 INIMTDSPITEVEPGIIHLKSGETIKAGTFIWTGGVEAKDFVKNI--------GLRTGKR 279
Query: 369 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
G+ E ++ + P I+ +GD + G +PA + A + A+ A +N+ A I+ +P
Sbjct: 280 GKIEVNKYMQSVDDPNIYVIGDDAYFVTEHGE-MPALVESAMESAECACYNIAADIHGQP 338
Query: 429 LLPFRFQNLGEMMILGRNDAA 449
F+ + G M+ +G A
Sbjct: 339 KKEFKLELRGVMVSIGSTYAV 359
>gi|161521783|ref|YP_001585210.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia multivorans ATCC 17616]
gi|189352055|ref|YP_001947682.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616]
gi|160345833|gb|ABX18918.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia multivorans ATCC 17616]
gi|189336077|dbj|BAG45146.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616]
Length = 452
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 160/392 (40%), Gaps = 36/392 (9%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL+ A RL + + +V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLHLATRLGDTIGRRGHT-EVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + ++ + + + G + G +L L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALQRVDRAARIATIGAVHDADGTEILPARTL--AYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
++G+ VPGAA A P L+ A RK + R E++ A V ++
Sbjct: 132 AVGSVTNFFGVPGAARHALPLENLDQAEDFRRKFLAACTKANHRAEQQPAQPAAPVSISV 191
Query: 258 CPTGTPG-NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 316
G G AAL+ VQ + Y + + + + + +P + A + S
Sbjct: 192 IGAGATGVELAAALR----HAVQQLTTYRFKALDGARDVRIRLIEGAPRILPALDA-RLS 246
Query: 317 DKYILELQP-----------------AIKGLESQIFEADLVLWTVGSKPLLPHVEPPN-- 357
DK +L+ A+ + +D+ +W G V P
Sbjct: 247 DKMHAQLRALNVEVLTDTRVAEVGADAVTIASGERLASDITIWAAG-------VAGPAIL 299
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFA 416
L + LN Q +TL P + A GD +A + + LP AQVA QQA +
Sbjct: 300 RELDGIALNRSNQVIVTDTLQTPDDPHVHAFGDCAACPSNGASGCLPPRAQVAHQQAVYL 359
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
I +P+ F F++ G ++ LG A
Sbjct: 360 SQAFARRIAGKPVAGFTFRDAGTVVSLGHAGA 391
>gi|167590364|ref|ZP_02382752.1| NADH dehydrogenase [Burkholderia ubonensis Bu]
Length = 452
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 163/390 (41%), Gaps = 32/390 (8%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL A RL V Q V+LVD+S +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLQLATRLGDAVGQRGLA-DVVLVDRSPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G QF + ++ + + + G + G +L V YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFQFVQGELQRVDRARRVATIGAVRDGDGSEILPPRD--VHYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
++G+ VPGA+ A P +E A RK + R E + +A V +
Sbjct: 132 AVGSVTNFFNVPGASRHALPLENVEQAEDFRRKFLAACAKANHRAEGQPDRRAPPVCINV 191
Query: 258 CPTGTPGNREAA-------------LKVLSAR---KVQLVLGYFVRCIRRVGEFEASVKQ 301
G G AA K LS +++L+ G R + +GE ++
Sbjct: 192 IGAGATGVELAAALTHAIDQLAAYRFKALSPDRDVRIRLIEGG-PRVLPVLGERLSARMH 250
Query: 302 PESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVG-SKPLLPHVEPPNNR 359
+ + + D + + E+ AI + +D+ +W G + P +
Sbjct: 251 AQ---LTALHVDVLTSTRVAEVGADAIVTATGERLASDITIWAAGVAGPAMLRT------ 301
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP-LPATAQVAFQQADFAGW 418
+ DL LN Q +TL P +FA GD +A + LP AQVA QQA +
Sbjct: 302 IGDLALNNANQVIVTDTLQTPDDPHVFAFGDCAACPSAGAHGFLPPRAQVAHQQAVYLSH 361
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
++ +P+ F F++ G ++ LG A
Sbjct: 362 AFARRLSGKPVAGFTFRDAGTVVSLGHAGA 391
>gi|421649690|ref|ZP_16090078.1| pyridine nucleotide-disulfide oxidoreductase [Acinetobacter
baumannii OIFC0162]
gi|445456005|ref|ZP_21445621.1| pyridine nucleotide-disulfide oxidoreductase [Acinetobacter
baumannii OIFC047]
gi|408513279|gb|EKK14908.1| pyridine nucleotide-disulfide oxidoreductase [Acinetobacter
baumannii OIFC0162]
gi|444778792|gb|ELX02798.1| pyridine nucleotide-disulfide oxidoreductase [Acinetobacter
baumannii OIFC047]
Length = 430
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 99/439 (22%), Positives = 179/439 (40%), Gaps = 59/439 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ R+ I+G GFGG+ A L + + ++D+ +F+P+LY++ + E
Sbjct: 7 RHRVVIIGAGFGGIEAANSLAGV------NVDITIIDRRNHHLFQPLLYQVAGSSLSTSE 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT--VLLESGLIVEYDWLV 196
IA + N + V+ L G + G+ V+L+ G + YD LV
Sbjct: 61 IAWPIRYIFRN------RPEVRTLM--------GEVQGIEVGSRLVVLDDGEKLHYDTLV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVET 255
++ GA FA TL DA + +R L+ E ER ++ + +A+ +T
Sbjct: 107 IATGATHAYFGHDEWERFAPGLKTLGDATNIRERILAAFE--EAERTKDPILRKAL--QT 162
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG---------- 305
+ G P E LS +L R R + E+ V E+G
Sbjct: 163 FVIIGGGPTGVE-----LSGTIAELAKDTLSRDFRLIDPRESRVVLIEAGPRLLSVFPEK 217
Query: 306 --AIPNIAADKNSDKYILELQPAIKGLESQIFE-----ADLVLWTVGSKPLLPHVEPPNN 358
+ A ++ + +L + +++ A ++W G + P
Sbjct: 218 LSSYTRQALEQLGVEVVLRTPVTSCSEDGVVYDGKQLPAKTIIWAAGVQA------SPAA 271
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
R ++ + G+ D L V GHP IF +GD++A+ G+ +P A A QQ +
Sbjct: 272 RWLNVESDRAGRVLVDSNLTVTGHPEIFVIGDTAAVTMEDGKLVPGIAPAAKQQGKYVAK 331
Query: 419 NLWAAINDRPLL-PFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
+ + + + PF++ + G + +GR+ A V + L G + KL ++ L
Sbjct: 332 TIDNRLKGKDIKEPFKYHHQGNLATIGRSRAVVDMGKFQ---LQGVLAWWFWKLIHIYFL 388
Query: 478 PTDEHRLKVGVSWLTKSAI 496
+ RL V +SWL ++
Sbjct: 389 IGVQSRLNVALSWLWNHSV 407
>gi|359300345|ref|ZP_09186184.1| NADH dehydrogenase [Haemophilus [parainfluenzae] CCUG 13788]
Length = 426
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 144/347 (41%), Gaps = 28/347 (8%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ +VLL+D++ ++KP+L+E+ +G +D A + AN G QF + + +
Sbjct: 28 KRAKVLLIDRNPTHLWKPLLHEVATGSLDDGTDAVSYRAHAANHGFQFQQGTLTGVNREQ 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ P+ G ++ E + YD LV+++G++ G AE E A +
Sbjct: 88 REVILAPIVDEQGEELVKERH--ISYDKLVIAIGSKSNDFGTKGVAEHCIFLDGSEQAKQ 145
Query: 227 VDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPG-NREAALKVLSARKVQLVLGYF 285
+++ EL + F ++K +V+ I G G A L A + G
Sbjct: 146 FQQRMLELFLK-FSHSQDK------DVKIAIVGGGATGIELSAELYNAVAHLNEYGFGKL 198
Query: 286 VRCIRRVGEFEAS----------VKQPESGAIPNIAADKNSDKYILE-LQPAIKGLESQI 334
R +V EA V + D + I E + A+ + +
Sbjct: 199 DRASLKVTLVEAGPRLIPALTEKVSNSALSELRKAGVDVRLNTMITEAVDGALITKDGEK 258
Query: 335 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 394
EADL++W G K P + N Q E +TL P +F +GD +AL
Sbjct: 259 IEADLMVWAAGIKA------PDFTKELGFETNRLNQIEIKDTLQTTIDPNVFVIGDCAAL 312
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 441
G+ +P AQ A Q A G N+ A + + PFRF++ G ++
Sbjct: 313 I-QDGKAIPLRAQAAHQMATQCGKNIVALSEGKEMKPFRFRDKGSLL 358
>gi|365967736|ref|YP_004949298.1| LOW QUALITY PROTEIN: Ndh protein [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|365746649|gb|AEW77554.1| LOW QUALITY PROTEIN: Ndh protein [Aggregatibacter
actinomycetemcomitans ANH9381]
Length = 444
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 162/391 (41%), Gaps = 49/391 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ V L+D+++ ++KP+L+EL +G +D A + N F + + L
Sbjct: 28 KRANVTLIDRNQTHLWKPLLHELATGALDDGVEALSYRAHACNHHFNFEQGSMVGLNRQH 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G +++ + YD+LV+++G++ G AE A R
Sbjct: 88 KYVELAPVYGEDGDMIVVSRR--IPYDYLVIAIGSKSNDFNTKGVAENCIFLDNPSQAMR 145
Query: 227 VDRKLSEL--ERRNFERLEEKG-------IVQAINVETTICPTGTPGNREAALKVLSARK 277
K+ EL + R + L++ G +V+ ++ I G G E + ++ +A +
Sbjct: 146 FQHKMLELFLKFRENQALDDIGEEESKQQLVEDGHINIAIVGAGATG-VELSAELYNAAE 204
Query: 278 VQLVLGYFVRCIRRVGEFEAS---VKQPESG-----AIP------------NIAADKNSD 317
GY G+ ++S V E+G A+P + D ++
Sbjct: 205 HLSSYGY--------GQIDSSRLKVTLVEAGPRILPALPERISNDATEELRKLGVDVKTN 256
Query: 318 KYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETL 377
I+E + + Q+ ADL++W+ G + L +N Q +TL
Sbjct: 257 TMIVEAKKNNWTKDGQLIPADLIVWSAGIR-----TSAITKNFDGLEINRINQLVVKKTL 311
Query: 378 CVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNL 437
IFA+GD L G+P+P AQ A Q A N+ A +++PL F + +
Sbjct: 312 QTTNDSTIFAMGDCCFLMQDDGKPVPPKAQAAHQMASLCAKNMVALFDNKPLKDFEYNDK 371
Query: 438 GEMMILGRNDA--AVSPSFVEG--VTLDGPI 464
G ++ L A A+S G +T++G I
Sbjct: 372 GSLVSLSEFTAFGALSGKITGGSSMTIEGKI 402
>gi|302867292|ref|YP_003835929.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Micromonospora aurantiaca ATCC 27029]
gi|302570151|gb|ADL46353.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Micromonospora aurantiaca ATCC 27029]
Length = 432
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 107/428 (25%), Positives = 181/428 (42%), Gaps = 48/428 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPR+ I+G GF G + A L L + +++L++ ++ F++ P+L E+ G V+
Sbjct: 3 KPRVVIVGAGFAGYHAAKTLRRLA---RDRAEIVLLNTTDYFLYLPLLPEVAVGVVEPTR 59
Query: 139 IAPRFADLLANTGVQFFK-DRVKLLCP-SDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
IA A L V + DRV L + V G HG + YD LV
Sbjct: 60 IAVPLAGTLDGVRVVIGEADRVDLQNRWVGYRSVEG----DHGQ---------LAYDRLV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVET 255
LS+G+ KL +PG E+A F L +A + D + ++E L + Q
Sbjct: 107 LSVGSVNKLLPIPGVTEYAHGFRGLPEALFLHDHVVRQVE---LAELTQDPAEQRARTTF 163
Query: 256 TICPTGTPGNREAAL------KVLSAR---KVQLVLGYFVRCIRRVGEFEASVKQPESGA 306
+ G G AA ++++ R KV+ R + E + +
Sbjct: 164 VVVGAGYTGTEVAAHGQLFTDRLMAQRPHLKVRPRWMLLDVAPRVLPELDRRMSVTADRV 223
Query: 307 IPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
+ D + E P + + + ++W VG + P+ + +L L
Sbjct: 224 LRKRGVDVRMGTSVAEATPDGVMLTDGEYVPTCSLVWCVGVR--------PDPFVAELGL 275
Query: 366 NA-RGQAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPATAQVAFQQADFAGWNLWA 422
+G+ DE L V G+P +FA GD++A+ D + G+ TAQ A +Q A N+ A
Sbjct: 276 RTEKGRLVVDEFLNVPGYPEVFACGDAAAVPDPTRPGQVCAMTAQHAQRQGKLAAHNIAA 335
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 482
+ ++ +LG ++ LG DAA +P V L G + + +L+ +P +
Sbjct: 336 SYGQGVRKSYKHHDLGWVVDLGGKDAAANPL---KVPLAGLPAKAVTRGYHLLAMPGN-- 390
Query: 483 RLKVGVSW 490
R +V W
Sbjct: 391 RPRVAADW 398
>gi|410453074|ref|ZP_11307036.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus bataviensis LMG 21833]
gi|409933819|gb|EKN70739.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus bataviensis LMG 21833]
Length = 407
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 157/385 (40%), Gaps = 56/385 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I ILG G+GG+ T+ LE L+ + V L+++ + L++ G +
Sbjct: 3 KPKIVILGAGYGGIITSKSLEKLLKSGE--ADVTLINKHDYHYLTTQLHKTGVGTAADRQ 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA +L+ +F K V H V LE G V YD+L+++
Sbjct: 61 IAMSIPELINPAKTRFLKAAVS-------------SVDIHSQGVHLEGGETVTYDYLLIA 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE---LERRNFE--RLEEKGIVQAINV 253
LG E + +PG E AF + + ++ + L +++++ RL V A
Sbjct: 108 LGFEVETFGIPGVKENAFKIRSFRSTKIIYHQIVKQFNLYKQDYDPSRLT---FVVAGGG 164
Query: 254 ETTICPTGTPGN------RE-----AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQP 302
T I G + +E ++++ V+ +F + E + +
Sbjct: 165 FTGIEMLGELADGLPKLCKEHDIPFEKIRIIGIEAAPSVIPFFPK-----QSIEYTQEVL 219
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGLESQI-FEADLVLWTVGSKPLLPHVEPPNNRLH 361
E I I A K ILE P LE+ + ++W+ G K N +H
Sbjct: 220 EKRNIEVITATK-----ILECTPEKVLLENNLEIPTRTLIWSCGVK--------GNTIVH 266
Query: 362 D--LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
LP+ +G+ D L VK IF++GD S LP TAQVA QQA N
Sbjct: 267 KWGLPIE-KGKIPVDSYLRVKNSKNIFSIGDCSLFMKDEKNALPPTAQVALQQAPVCAKN 325
Query: 420 LWAAINDRPLLPFRFQNLGEMMILG 444
+ A+I L F + + G + +G
Sbjct: 326 IVASIRGESLKTFEYHHKGSVASIG 350
>gi|295700822|ref|YP_003608715.1| NADH dehydrogenase [Burkholderia sp. CCGE1002]
gi|295440035|gb|ADG19204.1| NADH dehydrogenase [Burkholderia sp. CCGE1002]
Length = 451
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 154/364 (42%), Gaps = 34/364 (9%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
Q+ LVD+ ++KP+L+E+ +G +D + +A +F + + L ++
Sbjct: 36 QITLVDRFPTHIWKPLLHEVAAGSMDPFTQELPYAAQARWHRFEFQQGDLTALDRANQRI 95
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
G + G +L E ++EYD LV+++G+ V GAAEF+ T+ +A R +
Sbjct: 96 TLGTVLDDDGAELLPER--VLEYDTLVIAIGSTTAFFGVKGAAEFSIALDTVSEAERFRK 153
Query: 230 KL----SELERRNFERLEEKG-----IVQAINVETTICPTGTPGNREAA-----LKVLSA 275
+L E + E +E + ++ I G G +A +VLSA
Sbjct: 154 RLIAACMRAEHQAHEPVESRPGPGTWTSSEPRIQVAIVGGGATGVELSAELRNTAQVLSA 213
Query: 276 ---------RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA 326
V +VL R + + V S + + + + E+ P
Sbjct: 214 YGLHKLDPRHDVGIVL--IEAGPRILPALQERVSTATSELLTKLGVKLMIGETVAEVAPG 271
Query: 327 -IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 385
I+ ADL +W G K P V +L LP+N GQ TL + I
Sbjct: 272 YIRTASGHTVRADLTVWAAGIKA--PAVL---TQLDGLPVNRLGQLIVRRTLQTEIDDNI 326
Query: 386 FALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
FALGD +A + R +P AQ A QQA F L A + +RPL F +++ G ++ LG
Sbjct: 327 FALGDCAACEWPGNERNVPPRAQAAHQQASFLMKGLAARLENRPLPEFTYRDFGSLVSLG 386
Query: 445 RNDA 448
A
Sbjct: 387 HFSA 390
>gi|16330379|ref|NP_441107.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|383322120|ref|YP_005382973.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325289|ref|YP_005386142.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491173|ref|YP_005408849.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436440|ref|YP_005651164.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|451814537|ref|YP_007450989.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|1652869|dbj|BAA17787.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|339273472|dbj|BAK49959.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|359271439|dbj|BAL28958.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274609|dbj|BAL32127.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277779|dbj|BAL35296.1| NADH dehydrogenase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958299|dbj|BAM51539.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
gi|451780506|gb|AGF51475.1| NADH dehydrogenase [Synechocystis sp. PCC 6803]
Length = 445
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 94/436 (21%), Positives = 175/436 (40%), Gaps = 54/436 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDA 136
++P + I+GGGF GLYTA L + P + L+D+ +F+P+LY++ +G +
Sbjct: 8 RRPHVVIVGGGFAGLYTAKNLR-------RSPVDITLIDKRNFHLFQPLLYQVATGSLSP 60
Query: 137 WEIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA P L ++ D+V + P V+LE + YDWL
Sbjct: 61 ADIASPLRGVLKGQKNIRVLMDKVIDIDPDKQ-------------KVVLEDHAPIAYDWL 107
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVE 254
V++ G A A T+EDA + R + E E E+ V
Sbjct: 108 VVATGVSHHYFGNDHWAALAPGLKTIEDALTIRQRIFAAFEAAEKESNPERQQAWLTFVI 167
Query: 255 TTICPTGTP----------GNREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPE 303
PTG + + + R+ +++L + + RV ++ +
Sbjct: 168 VGAGPTGVELAGAIAEIAHSSLKDNFHRIDTRQAKILL---IEGVDRVLPPYKPQLSARA 224
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGL----ESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
+ ++ +++ + ++ P + +++ VLW G +
Sbjct: 225 QRDLEDLGVTVLTERMVTDINPEQVTVHNNGQTETIVTKTVLWGAGVR-----ASSLGKI 279
Query: 360 LHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ D L+ G+ + L V IF LGD + +PLP A VA Q+A +
Sbjct: 280 IGDRTGAELDRAGRVVVNPDLSVASFDNIFVLGDLANYSHQGDQPLPGVAPVAMQEAAYL 339
Query: 417 GWNLWAAINDRP--LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
+ A + ++ ++PFR+ + G + ++G+N A V F + L + + YL
Sbjct: 340 SKLIPARLAEKEQIMVPFRYIDYGSLAVIGQNKAVVDLGFAQFTGLVAWMIWVWAHVYYL 399
Query: 475 IRLPTDEHRLKVGVSW 490
I +++L V + W
Sbjct: 400 IEF---DNKLIVMLQW 412
>gi|399044509|ref|ZP_10738112.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium sp. CF122]
gi|398056929|gb|EJL48909.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium sp. CF122]
Length = 423
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 171/412 (41%), Gaps = 71/412 (17%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
++ LVD+ +F+P+LY+ +LS AW I ++D D LL
Sbjct: 28 RITLVDRRNHHLFQPLLYQVATTILSTSDIAWPIRHLYSDR---------PDVTTLL--G 76
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEFA 215
+ +G++ T V L SG+ + YD LVL+ GA EP V PG
Sbjct: 77 EVVGID-----TAAKEVALRSGMTLRYDSLVLATGATHAYFGRDDWEP---VAPG----- 123
Query: 216 FPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKV-- 272
TLEDA + R+ L ER E + I A+ + TI G G A + V
Sbjct: 124 --LKTLEDATTIRRRVLLAFERAETE--TDPAIRDAL-LTFTIVGAGPTGVELAGIIVEL 178
Query: 273 -----------LSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYI 320
+ RK ++VL V RV F + A+ + + + + +
Sbjct: 179 ARNALPREFRNIDTRKTRVVL---VEAGPRVLPTFAEELSAYAGKALEELGVELHIGERV 235
Query: 321 LELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVK 380
LE A I + ++W G + P + D+P + G+ ++ L
Sbjct: 236 LECTAAGVETSEGIIPSRTIVWAAGIQ------ASPAAKWLDVPADRAGRVIVEKDLTAP 289
Query: 381 GHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGE 439
G P +F +GD++++ SG P+P A A QQ +A + A + +P PFR+++ G
Sbjct: 290 GFPDVFVVGDTASVIQESGAPVPGIAPAAKQQGAYAAKVIRARLAAKPAPAPFRYRHQGS 349
Query: 440 MMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+ +G++ A + ++ L G I +A++ L R V SWL
Sbjct: 350 LATIGQSAAIIDFGRIK---LKGWIAWWIWGIAHIYFLIGTRSRFAVAWSWL 398
>gi|50841641|ref|YP_054868.1| NADH dehydrogenase [Propionibacterium acnes KPA171202]
gi|289424391|ref|ZP_06426174.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes SK187]
gi|289427552|ref|ZP_06429265.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes J165]
gi|295129692|ref|YP_003580355.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes SK137]
gi|335055422|ref|ZP_08548203.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium sp.
434-HC2]
gi|354606122|ref|ZP_09024093.1| hypothetical protein HMPREF1003_00660 [Propionibacterium sp.
5_U_42AFAA]
gi|386023098|ref|YP_005941401.1| NADH dehydrogenase-like protein YumB [Propionibacterium acnes 266]
gi|387502516|ref|YP_005943745.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes 6609]
gi|407934533|ref|YP_006850175.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes C1]
gi|417930539|ref|ZP_12573915.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes SK182]
gi|422384122|ref|ZP_16464263.1| NADH dehydrogenase [Propionibacterium acnes HL096PA3]
gi|422386951|ref|ZP_16467068.1| NADH dehydrogenase [Propionibacterium acnes HL096PA2]
gi|422394129|ref|ZP_16474176.1| NADH dehydrogenase [Propionibacterium acnes HL099PA1]
gi|422424138|ref|ZP_16501089.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL043PA1]
gi|422429276|ref|ZP_16506181.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL072PA2]
gi|422436965|ref|ZP_16513812.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL092PA1]
gi|422447824|ref|ZP_16524556.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL036PA3]
gi|422455327|ref|ZP_16531997.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL030PA1]
gi|422460782|ref|ZP_16537416.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL038PA1]
gi|422475832|ref|ZP_16552277.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL056PA1]
gi|422476410|ref|ZP_16552849.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL007PA1]
gi|422479367|ref|ZP_16555777.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL063PA1]
gi|422481878|ref|ZP_16558277.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL036PA1]
gi|422484846|ref|ZP_16561213.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL043PA2]
gi|422487955|ref|ZP_16564286.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL013PA2]
gi|422489399|ref|ZP_16565726.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL020PA1]
gi|422492407|ref|ZP_16568715.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL086PA1]
gi|422497668|ref|ZP_16573941.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL002PA3]
gi|422503885|ref|ZP_16580122.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL027PA2]
gi|422504596|ref|ZP_16580830.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL036PA2]
gi|422509064|ref|ZP_16585222.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL046PA2]
gi|422514639|ref|ZP_16590757.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA2]
gi|422519572|ref|ZP_16595618.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL074PA1]
gi|422520460|ref|ZP_16596502.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL045PA1]
gi|422523425|ref|ZP_16599437.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL053PA2]
gi|422525537|ref|ZP_16601539.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL083PA1]
gi|422527984|ref|ZP_16603971.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL053PA1]
gi|422531631|ref|ZP_16607579.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA1]
gi|422535009|ref|ZP_16610932.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL072PA1]
gi|422536166|ref|ZP_16612074.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL078PA1]
gi|422543979|ref|ZP_16619819.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL082PA1]
gi|422551585|ref|ZP_16627378.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA3]
gi|422554972|ref|ZP_16630742.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA2]
gi|422559385|ref|ZP_16635113.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA1]
gi|422567414|ref|ZP_16643040.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL002PA2]
gi|50839243|gb|AAT81910.1| putative NADH dehydrogenase [Propionibacterium acnes KPA171202]
gi|289155088|gb|EFD03770.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes SK187]
gi|289159482|gb|EFD07673.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes J165]
gi|291375104|gb|ADD98958.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes SK137]
gi|313771303|gb|EFS37269.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL074PA1]
gi|313792734|gb|EFS40815.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA1]
gi|313803398|gb|EFS44580.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA2]
gi|313811668|gb|EFS49382.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL083PA1]
gi|313817809|gb|EFS55523.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL046PA2]
gi|313821366|gb|EFS59080.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL036PA1]
gi|313824694|gb|EFS62408.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL036PA2]
gi|313826358|gb|EFS64072.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL063PA1]
gi|313832135|gb|EFS69849.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL007PA1]
gi|313832936|gb|EFS70650.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL056PA1]
gi|313839796|gb|EFS77510.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL086PA1]
gi|314926400|gb|EFS90231.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL036PA3]
gi|314961500|gb|EFT05601.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL002PA2]
gi|314964108|gb|EFT08208.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL082PA1]
gi|314975372|gb|EFT19467.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL053PA1]
gi|314977423|gb|EFT21518.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL045PA1]
gi|314980086|gb|EFT24180.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL072PA2]
gi|314985236|gb|EFT29328.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA1]
gi|314986940|gb|EFT31032.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA2]
gi|314990566|gb|EFT34657.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA3]
gi|315078786|gb|EFT50808.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL053PA2]
gi|315081739|gb|EFT53715.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL078PA1]
gi|315082945|gb|EFT54921.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL027PA2]
gi|315086463|gb|EFT58439.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL002PA3]
gi|315088179|gb|EFT60155.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL072PA1]
gi|315096990|gb|EFT68966.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL038PA1]
gi|315107555|gb|EFT79531.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL030PA1]
gi|327332670|gb|EGE74405.1| NADH dehydrogenase [Propionibacterium acnes HL096PA2]
gi|327333840|gb|EGE75557.1| NADH dehydrogenase [Propionibacterium acnes HL096PA3]
gi|327444692|gb|EGE91346.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL013PA2]
gi|327446545|gb|EGE93199.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL043PA2]
gi|327449011|gb|EGE95665.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL043PA1]
gi|327457243|gb|EGF03898.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL092PA1]
gi|328757809|gb|EGF71425.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL020PA1]
gi|328759641|gb|EGF73240.1| NADH dehydrogenase [Propionibacterium acnes HL099PA1]
gi|332674554|gb|AEE71370.1| NADH dehydrogenase-like protein YumB [Propionibacterium acnes 266]
gi|333761928|gb|EGL39451.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium sp.
434-HC2]
gi|335276561|gb|AEH28466.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes 6609]
gi|340772157|gb|EGR94670.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes SK182]
gi|353557529|gb|EHC26897.1| hypothetical protein HMPREF1003_00660 [Propionibacterium sp.
5_U_42AFAA]
gi|407903114|gb|AFU39944.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes C1]
gi|456740654|gb|EMF65166.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes FZ1/2/0]
Length = 460
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 145/355 (40%), Gaps = 39/355 (10%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R AN G P H
Sbjct: 51 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAANNG------------PHTHF-- 96
Query: 171 NGPMACTHG-----GTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
AC G V +++G + YD+LVLS G PGAAE ++ T +
Sbjct: 97 --RRACVTGIDTENRIVEVDNGDPISYDYLVLSQGVGANFFGTPGAAENSYTIYTRASSL 154
Query: 226 RV-DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNRE-----AALKVLSARKVQ 279
R D + LE + +R + ++ T + GT + A +S +V
Sbjct: 155 RARDAIFTYLEDLDTQRDKTFDVIIVGGGPTGVEMAGTLAEMKSIGIPAIFPDVSTDRVH 214
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEAD 338
+ L + + F+ +++ + D ++ I E+ + ++ + Q AD
Sbjct: 215 VTLVEMANHL--LMPFDPALRHYTRRQLQKRGVDVRTNTAIAEVREDSVLLKDGQTLPAD 272
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 398
+V+W G + H N G+ TD TL VKG RIFA+GD + ++
Sbjct: 273 MVIWAAG---VGAHKSVTN---WGFEQGRGGRIATDGTLLVKGQDRIFAVGDGAI---NT 323
Query: 399 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 453
P P AQ A Q + + PL F + + G M +GRN A V S
Sbjct: 324 EDPKPQLAQPAIQGGECVARQIVHLELGEPLEKFEYNDKGTMATIGRNSAVVQLS 378
>gi|72161354|ref|YP_289011.1| NADH dehydrogenase [Thermobifida fusca YX]
gi|71915086|gb|AAZ54988.1| NADH dehydrogenase [Thermobifida fusca YX]
Length = 451
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 108/441 (24%), Positives = 184/441 (41%), Gaps = 61/441 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI ++G GF GL RLE + + K +++LV ++ +++P+L ++ SG +
Sbjct: 3 RPRIVVVGAGFAGLTALRRLEQRI--PEGKAEIVLVAPNDYMLYQPLLPQVASGLLTPQS 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE--SGLIV--EYDW 194
IA L T + P +G++ T TV++ SG YD
Sbjct: 61 IAVSLHRQLHRTHI----------IPGIAVGLD-----TDRNTVVVRKISGEYSYERYDR 105
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNF-----ERLEE---- 244
L+L+ G+ + +PG E A L +A + D L++LE N ER E
Sbjct: 106 LILAPGSVTRTFNIPGLIEHARGNKNLAEAVYLRDHVLAQLELANASDDPAERDERCTFI 165
Query: 245 ------KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
G+ A ++E +C EAA K + + R + E
Sbjct: 166 VVGGGYTGVETAASLEL-LC--------EAACKQYPKLRPHIQWHVVDIAPRLMPELGEH 216
Query: 299 VKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
+ Q + + + + E+ + + + ++ ++WT G+ P P
Sbjct: 217 LGQKTMELLRQRGIEVSLGVSVREVTEDKVTLTDDRVLPCRTLIWTAGTAP------SPL 270
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS----GRPLPATAQVAFQQA 413
LP RG+ L V GHP IF +GDS+A+ D S G P TAQ A Q
Sbjct: 271 IAATGLP-TERGKLSVGADLSVPGHPEIFGIGDSAAVPDLSKGEDGALCPPTAQHASTQG 329
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
A N+ A++ R + +++ G ++ L DA P GV +G + + +
Sbjct: 330 PVAADNVIASLLGRSTKHYYYRDRGLLVDLSGRDAVARPF---GVEFNGTAALALTRAYH 386
Query: 474 LIRLPTDEHRLKVGVSWLTKS 494
L LP+ R++V +WL ++
Sbjct: 387 LYSLPSGPARMRVAANWLIQA 407
>gi|256015261|ref|YP_003105270.1| NADH dehydrogenase [Brucella microti CCM 4915]
gi|376276813|ref|YP_005152874.1| NADH dehydrogenase [Brucella canis HSK A52141]
gi|255997921|gb|ACU49608.1| NADH dehydrogenase [Brucella microti CCM 4915]
gi|363405187|gb|AEW15481.1| NADH dehydrogenase [Brucella canis HSK A52141]
Length = 441
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 116/430 (26%), Positives = 181/430 (42%), Gaps = 53/430 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ++G GFGGL L D K ++ L+DQ +F+P+LY++ + + EI
Sbjct: 24 PHIVVVGAGFGGLQLIRDL------DGAKVRITLIDQRNHHLFQPLLYQVATTILSTSEI 77
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A +L F+DR ++ + LG + T +V LE+G V YD LVL+
Sbjct: 78 AWPIRNL--------FRDRAEV---TTLLGTVIDVD-TARKSVFLENGDEVSYDMLVLAT 125
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFERLEEKGIVQAINVETTIC 258
GA + A LEDA + R L ER ER + QA+ + +I
Sbjct: 126 GARHAYFGNDQWEKLAPGLKALEDATTIRRRLLLAFERA--EREPDMARRQAL-LTFSIV 182
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP---NI 310
G G A + AR+ R + +A V E+G A P +
Sbjct: 183 GGGPTGVELAGIIAELARRT------LWPEFRNIDTRQARVLLLEAGPRILSAFPEDLSA 236
Query: 311 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE----PPNNRLHDLPLN 366
A + +K +E++ G+ + + V TVG + + H L L+
Sbjct: 237 YARRALEKLGVEVR---LGIPVKDITQEGV--TVGDEFIPCHTTVWAAGVAASPAALWLD 291
Query: 367 AR----GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
A G+ + L V GH IFA+GD++ + GRP+P A A QQ + + +
Sbjct: 292 AESDRAGRVKVLSNLSVPGHEDIFAIGDTAWVEGDDGRPVPGIAPAAKQQGAYVAKVIRS 351
Query: 423 AI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
+ N P LPFR+++ G + +G+ A V + L G I +A++ L
Sbjct: 352 RVENKTPPLPFRYKHQGNLATIGKGAAVVDMGRIR---LKGTIAWWFWGIAHIFFLIGTR 408
Query: 482 HRLKVGVSWL 491
R V SWL
Sbjct: 409 SRAAVAWSWL 418
>gi|29828434|ref|NP_823068.1| NADH dehydrogenase [Streptomyces avermitilis MA-4680]
gi|29605537|dbj|BAC69603.1| putative NADH dehydrogenase (complex I) [Streptomyces avermitilis
MA-4680]
Length = 453
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 188/471 (39%), Gaps = 109/471 (23%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI I+G GF G TA L L K + L++ ++ F++ P+L ++ +G ++
Sbjct: 3 RPRILIVGAGFAGYQTARTLSRLTRH---KADITLLNPTDYFLYLPLLPQVAAGILEPRR 59
Query: 139 IAPRFADLLANT----------GVQFFKDRVKLLCPSDHLG------------------- 169
+ A L + G+ V+ P +G
Sbjct: 60 VTVSLAGTLPHVRLVLGEAQTDGIDLDARTVRYTGPEGDVGTLTYDRLVLAAGSVNKLLP 119
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD---------VVPGAA----EFAF 216
+ G HG L E+ + ++ + L A VV GA E A
Sbjct: 120 IPGVAEHAHGFRGLPEALYLRDHVTRQVELAAAAADSETCASRCTFVVVGAGYTGTEVAV 179
Query: 217 PFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNRE----AALKV 272
L DA +R L E R + L+ + P PG E A +V
Sbjct: 180 QGQLLTDALVRNRPLREGRRPRWLLLD-------------VAPRVLPGLDERLSRTADRV 226
Query: 273 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 332
L R V++ +G V+ + SD +L +
Sbjct: 227 LRKRGVEVRMGTSVK-------------------------EATSDGVLLS--------DG 253
Query: 333 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 392
+ + ++W VG +P +P L LP+ + G+ + TL V GHP +FA GD++
Sbjct: 254 EFVDTRTLVWCVGVRP-----DPLAESL-GLPMES-GRLLVEPTLQVPGHPEVFACGDAA 306
Query: 393 ALRD--SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
A+ D + G+ P TAQ A++Q AG N+ A+ P+R ++LG ++ LG AA
Sbjct: 307 AVPDLENPGQYTPMTAQHAWRQGKTAGHNVAASFGIGTRRPYRHRDLGFVVDLGGVQAAA 366
Query: 451 SPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVAL 501
+P G+ L GP+ + + +L +P + R++V WL ++ + A+
Sbjct: 367 NPL---GIPLSGPLAGAVTRGYHLAAMPGN--RVRVAADWLLEAVLPRQAV 412
>gi|403053035|ref|ZP_10907519.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Acinetobacter bereziniae LMG 1003]
Length = 430
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 102/439 (23%), Positives = 179/439 (40%), Gaps = 59/439 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ R+ I+G GFGG+ A L + + ++D+ +F+P+LY++ + E
Sbjct: 7 RHRVVIIGAGFGGIEAANSLAGV------NVDITIIDRRNHHLFQPLLYQVAGSSLSTSE 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT--VLLESGLIVEYDWLV 196
IA + N + V+ L G + G+ V+L+ G + YD LV
Sbjct: 61 IAWPIRYIFRN------RPEVRTLM--------GEVQGIEVGSRLVVLDDGEKLHYDTLV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVET 255
++ GA FA TL DA + +R L+ E ER ++ + +A+ +T
Sbjct: 107 IATGATHAYFGHDEWERFAPGLKTLGDATNIRERILAAFE--EAERTKDPILRKAL--QT 162
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-AIPNIAADK 314
+ G P E LS +L R R + E+ V E+G + ++ +K
Sbjct: 163 FVIIGGGPTGVE-----LSGTIAELAKDTLSRDFRLIDPRESRVVLIEAGPRLLSVFPEK 217
Query: 315 NSDKYILELQ----------PAIKGLESQI------FEADLVLWTVGSKPLLPHVEPPNN 358
S L+ P E + A ++W G + P
Sbjct: 218 LSSYTRQALEQLGVEVVLGTPVTSCSEDGVVYDGKQLPAKTIIWAAGVQA------SPAA 271
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
R ++ + G+ D L V GHP IF +GD++A+ G+ +P A A QQ +
Sbjct: 272 RWLNVESDRAGRVLVDSNLTVTGHPEIFVIGDTAAVTMEDGKLVPGIAPAAKQQGKYVAK 331
Query: 419 NLWAAINDRPLL-PFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
+ + + + PF++ + G + +GR+ A V + L G + KL ++ L
Sbjct: 332 TIDNRLKGKDIKEPFKYHHQGNLATIGRSRAVVDMGKFQ---LQGVLAWWFWKLIHIYFL 388
Query: 478 PTDEHRLKVGVSWLTKSAI 496
+ RL V +SWL ++
Sbjct: 389 IGVQSRLNVALSWLWNHSV 407
>gi|298249077|ref|ZP_06972881.1| NADH dehydrogenase (ubiquinone) [Ktedonobacter racemifer DSM 44963]
gi|297547081|gb|EFH80948.1| NADH dehydrogenase (ubiquinone) [Ktedonobacter racemifer DSM 44963]
Length = 459
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 104/439 (23%), Positives = 181/439 (41%), Gaps = 70/439 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI ILG G+ GL AL+L + + +V+++D++ +F P+L+ + +G + +
Sbjct: 26 RILILGAGYSGLTLALQLGREL-KALNNIRVMVIDRNNDLLFTPLLWTVANGRANPNNVV 84
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
D G QFF ++ + + ++ T G++ YD LV++LG
Sbjct: 85 IPIRDF--QKGRQFFVRHAEI----EQIDLDQKEVRTSQGSL--------PYDILVIALG 130
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LERRNF-----ERLEEKGIVQAINVE 254
+ + +PG + A PF T DA ++ L + +E ++ ER E V
Sbjct: 131 SRTAVPDLPGLRQHALPFHTPADALQLRNHLIDAIESAHYATDPAERQEWLTFV------ 184
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYF----------VRCIRRVGEFEA--SVKQP 302
G G+ A L + L+ G F VR + VG E + P
Sbjct: 185 -----VGGAGDTGAELAAIV--HDYLLTGLFRAYPWLADAPVRVVM-VGRAERILPMSDP 236
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGLE-------SQIFEADLVLWTVG--SKPLLPHV 353
+ + A + + + +I G+E S A + W G + ++ H+
Sbjct: 237 RTSHLVYRALKREGIEVLTGR--SITGVEGRAVLTSSGTIPARTLFWAAGITAPEVVCHL 294
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR-PLPATAQVAFQQ 412
P+ R G D+ L + + ++ +GD + DS + P+P TAQ A QQ
Sbjct: 295 PVPHAR--------NGAVLVDDHLRIPEYQDVYVIGDCAWAYDSITKAPVPPTAQAARQQ 346
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
+ G L ++P LP+R+ LG + +LG V +T G L
Sbjct: 347 GAYVGKVLARECTNQPALPYRYTPLGHLALLGHETGVAQ---VGSLTFGGLPAWILWHLV 403
Query: 473 YLIRLPTDEHRLKVGVSWL 491
YL+R P+ R+++ WL
Sbjct: 404 YLLRNPSWTRRIRLVADWL 422
>gi|261750197|ref|ZP_05993906.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella suis bv. 5 str. 513]
gi|261739950|gb|EEY27876.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella suis bv. 5 str. 513]
Length = 424
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 116/430 (26%), Positives = 180/430 (41%), Gaps = 53/430 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ++G GFGGL L D K ++ L+DQ +F+P+LY++ + + EI
Sbjct: 7 PHIVVVGAGFGGLQLIRDL------DGAKVRITLIDQRNHHLFQPLLYQVATTILSTSEI 60
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A +L F+DR ++ + LG + T +V LE+G V YD LVL+
Sbjct: 61 AWPIRNL--------FRDRAEV---TTLLGTVIDVD-TARKSVFLENGDEVSYDMLVLAT 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFERLEEKGIVQAINVETTIC 258
GA + A LEDA + R L ER ER + QA+ + +I
Sbjct: 109 GARHAYFGNDQWEKLAPGLKALEDATTIRRRLLLAFERA--EREPDMARRQAL-LTFSIV 165
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP---NI 310
G G A + AR+ R + +A V E+G A P +
Sbjct: 166 GGGPTGVELAGIIAELARRT------LWPEFRNIDTRQARVLLLEAGPRILSAFPEDLSA 219
Query: 311 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE----PPNNRLHDLPLN 366
A + +K +E++ I I + + TVG + + H L L+
Sbjct: 220 YARRALEKLGVEVRLGIP--VKDITQEGV---TVGDEFIPCHTTVWAAGVAASPAALWLD 274
Query: 367 AR----GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
A G+ + L V GH IFA+GD++ + GRP+P A A QQ + + +
Sbjct: 275 AESDRAGRVKVLSNLSVPGHEDIFAIGDTAWVEGDDGRPVPGIAPAAKQQGAYVAKVIRS 334
Query: 423 AI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
+ N P LPFR+++ G + +G+ A V + L G I +A++ L
Sbjct: 335 RVENKTPPLPFRYKHQGNLATIGKGAAVVDMGRIR---LKGAIAWWFWGIAHIFFLIGTR 391
Query: 482 HRLKVGVSWL 491
R V SWL
Sbjct: 392 SRAAVAWSWL 401
>gi|424868725|ref|ZP_18292460.1| NADH dehydrogenase [Leptospirillum sp. Group II 'C75']
gi|124515031|gb|EAY56542.1| NADH dehydrogenase [Leptospirillum rubarum]
gi|387221061|gb|EIJ75656.1| NADH dehydrogenase [Leptospirillum sp. Group II 'C75']
Length = 450
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 113/431 (26%), Positives = 186/431 (43%), Gaps = 57/431 (13%)
Query: 77 KKKP-RICILGGGFGGLYTALRLESLVWQDDKKPQVLL--VDQSERFVFKPMLYELLSGE 133
++KP RI ILG GFGGLYTA+ L+ + K P V + +D+ F+F PML+ +G
Sbjct: 13 QEKPYRILILGAGFGGLYTAVYLDRFL---KKHPNVWITVIDRRNYFLFTPMLHSTATGS 69
Query: 134 VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
++ IA + T V V+ ++ + + T + +D
Sbjct: 70 LEPRYIAHSVRKIFRRTRVHAHIGEVR------NIDLQNKIVRTEHRDL--------PFD 115
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINV 253
LV+SLG+E + E F +L+DA ++ L + + + + + A+
Sbjct: 116 DLVISLGSETNFYGLESRLENIFTLKSLKDASAINNHLIRMFEKAYWEEDSEARRAAL-- 173
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR---RVGEFEASVK----QPESGA 306
T + G P E A ++ +L+ + R + RV EA+ K PE +
Sbjct: 174 -TFVVVGGGPTGVELAGEIHEYAHRELLRDFGRRISKEEIRVILVEATGKILPSLPEKLS 232
Query: 307 IPNI-AADKNSDKYILE--LQPAIKGLESQI----FEADLVLWTVGSKPLLPHVEPPNNR 359
+ + K + ILE L+ KG+ S A+ ++W G + N
Sbjct: 233 LEALDRLRKIGIEVILEGRLEEYRKGVMSLSGKPPIRAETLVWAAGVRT--------NPL 284
Query: 360 LHDLPLNARGQAE-----TDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQA 413
LPL GQ T E+L ++ ++ +GD +S L GRP P TAQ A +QA
Sbjct: 285 TAGLPLEKDGQNRIRVKGTLESLSME---HVWVVGDNASCLNPWEGRPYPPTAQTAVRQA 341
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
N+ A + +P F ++G + +G N A +S + TL G +G L Y
Sbjct: 342 RTVAQNIVARLTRKPEKIFAHNHVGGFVSIGDNYALLS---AKQFTLSGILGWFLWNLVY 398
Query: 474 LIRLPTDEHRL 484
+ +LP +RL
Sbjct: 399 IHKLPIIRYRL 409
>gi|148558547|ref|YP_001257453.1| NADH dehydrogenase [Brucella ovis ATCC 25840]
gi|161620545|ref|YP_001594431.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Brucella canis ATCC 23365]
gi|163844642|ref|YP_001622297.1| hypothetical protein BSUIS_B0479 [Brucella suis ATCC 23445]
gi|260568219|ref|ZP_05838688.1| NADH dehydrogenase [Brucella suis bv. 4 str. 40]
gi|261323269|ref|ZP_05962466.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella neotomae 5K33]
gi|261753470|ref|ZP_05997179.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella suis bv. 3 str. 686]
gi|376278449|ref|YP_005108482.1| NADH dehydrogenase [Brucella suis VBI22]
gi|148369832|gb|ABQ62704.1| NADH dehydrogenase [Brucella ovis ATCC 25840]
gi|161337356|gb|ABX63660.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella canis ATCC 23365]
gi|163675365|gb|ABY39475.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|260154884|gb|EEW89965.1| NADH dehydrogenase [Brucella suis bv. 4 str. 40]
gi|261299249|gb|EEY02746.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella neotomae 5K33]
gi|261743223|gb|EEY31149.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella suis bv. 3 str. 686]
gi|358259887|gb|AEU07620.1| NADH dehydrogenase [Brucella suis VBI22]
Length = 424
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 116/430 (26%), Positives = 180/430 (41%), Gaps = 53/430 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ++G GFGGL L D K ++ L+DQ +F+P+LY++ + + EI
Sbjct: 7 PHIVVVGAGFGGLQLIRDL------DGAKVRITLIDQRNHHLFQPLLYQVATTILSTSEI 60
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A +L F+DR ++ + LG + T +V LE+G V YD LVL+
Sbjct: 61 AWPIRNL--------FRDRAEV---TTLLGTVIDVD-TARKSVFLENGDEVSYDMLVLAT 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFERLEEKGIVQAINVETTIC 258
GA + A LEDA + R L ER ER + QA+ + +I
Sbjct: 109 GARHAYFGNDQWEKLAPGLKALEDATTIRRRLLLAFERA--EREPDMARRQAL-LTFSIV 165
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP---NI 310
G G A + AR+ R + +A V E+G A P +
Sbjct: 166 GGGPTGVELAGIIAELARRT------LWPEFRNIDTRQARVLLLEAGPRILSAFPEDLSA 219
Query: 311 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE----PPNNRLHDLPLN 366
A + +K +E++ I I + + TVG + + H L L+
Sbjct: 220 YARRALEKLGVEVRLGIP--VKDITQEGV---TVGDEFIPCHTTVWAAGVAASPAALWLD 274
Query: 367 AR----GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
A G+ + L V GH IFA+GD++ + GRP+P A A QQ + + +
Sbjct: 275 AESDRAGRVKVLSNLSVPGHEDIFAIGDTAWVEGDDGRPVPGIAPAAKQQGAYVAKVIRS 334
Query: 423 AI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
+ N P LPFR+++ G + +G+ A V + L G I +A++ L
Sbjct: 335 RVENKTPPLPFRYKHQGNLATIGKGAAVVDMGRIR---LKGTIAWWFWGIAHIFFLIGTR 391
Query: 482 HRLKVGVSWL 491
R V SWL
Sbjct: 392 SRAAVAWSWL 401
>gi|392962759|ref|ZP_10328188.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans DSM
17108]
gi|421053177|ref|ZP_15516159.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans B4]
gi|421062984|ref|ZP_15525020.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans B3]
gi|421073837|ref|ZP_15534886.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pelosinus fermentans A11]
gi|392437532|gb|EIW15399.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans B3]
gi|392442218|gb|EIW19808.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans B4]
gi|392443826|gb|EIW21335.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pelosinus fermentans A11]
gi|392452000|gb|EIW28969.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans DSM
17108]
Length = 418
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 100/435 (22%), Positives = 175/435 (40%), Gaps = 63/435 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + I+G GFGG+ TA +L QD K + L+D+ +F+P+LY++ + + +
Sbjct: 9 KPHVVIIGAGFGGIRTA---RALAKQDVK---ITLIDKYNYHLFQPLLYQVATAGLSVDD 62
Query: 139 IA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA P A V F L ++ + + + G + YD+L++
Sbjct: 63 IAYPVRAIFREQKNVDF------RLAEVSNVDFDNKVVSMNTGNI--------AYDYLII 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-RLEEKGIVQAINVETT 256
++G + F TL+++ + + R FE EK + + T
Sbjct: 109 AVGGMTNYFGMKSMEANGFGMKTLDESVTIRNHVL----RMFELAAHEKDADKRRALLTF 164
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES-----GAIPNIA 311
+ G P E+A LS +L+ VR + E + E+ +P
Sbjct: 165 VIVGGGPTGVESA-GALS----ELIYHVMVREYHHLNFKEVRIMLVEASDKLLATMPEEL 219
Query: 312 ADKNSDKYI---LELQPAIKGLE----------SQIFEADLVLWTVGSKP--LLPHVEPP 356
+ + I +E++ ++ + ++ V+W G K L+ +E
Sbjct: 220 REVTVETLIRKHVEVRMCVQVTDYDGEKMSLKGGEVIPTHTVIWAAGVKANGLMDTLEVE 279
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ +A ++ L + P +F +GD++ RPLP A VA QQAD
Sbjct: 280 QASMR--------RAVVNDFLQLPNRPEVFVIGDAAHYVQGE-RPLPMIAPVAIQQADIT 330
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
N+ I R L F ++++G M +GRN A V G I S L +++R
Sbjct: 331 AKNIRNLIRGRELKKFVYKDVGNMATIGRNAAVVHMG---AFKTHGFIAWSIWSLVHILR 387
Query: 477 LPTDEHRLKVGVSWL 491
L +R V V W+
Sbjct: 388 LIDFRNRAVVFVKWM 402
>gi|228993786|ref|ZP_04153691.1| NADH dehydrogenase-like protein yjlD [Bacillus pseudomycoides DSM
12442]
gi|228999835|ref|ZP_04159407.1| NADH dehydrogenase-like protein yjlD [Bacillus mycoides Rock3-17]
gi|229007389|ref|ZP_04164986.1| NADH dehydrogenase-like protein yjlD [Bacillus mycoides Rock1-4]
gi|228753777|gb|EEM03218.1| NADH dehydrogenase-like protein yjlD [Bacillus mycoides Rock1-4]
gi|228759777|gb|EEM08751.1| NADH dehydrogenase-like protein yjlD [Bacillus mycoides Rock3-17]
gi|228765997|gb|EEM14646.1| NADH dehydrogenase-like protein yjlD [Bacillus pseudomycoides DSM
12442]
Length = 392
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 154/389 (39%), Gaps = 54/389 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVSEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDKKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFE-------RLEEKGIVQ 249
++ +PG E + + DA + V+ ++ E + E V+
Sbjct: 109 SKTAYFGIPGLEENSMVLKSAADANKIYKHVEDRIREYAKTKNEADATILIGGGGLTGVE 168
Query: 250 AINVETTICP--TGTPGNREAALKVLSARKVQLVLGYFVRCI--RRVGEFEA-SVKQPES 304
+ I P + G +K+L +L + R EA VK
Sbjct: 169 LVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDDLIERATTSLEARGVKFLTG 228
Query: 305 GAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNRLHD 362
+ N+A ++ ++L+ + Q A+ +WT G PL+
Sbjct: 229 LPVTNVAGNE------IDLK------DGQKIVANTFVWTGGVQGNPLIGE--------SG 268
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
L +N RG+A D L H +F GDS+ + GRP P TAQ+A+Q + G+NL+A
Sbjct: 269 LEVN-RGRATVDAYLQSTSHKDVFVAGDSAVVFGPEGRPYPPTAQIAWQMGELIGYNLYA 327
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDAAVS 451
A+ + F N G + LGR DA +
Sbjct: 328 ALEGKAFEEFAPVNSGTLASLGRKDAVAT 356
>gi|423451650|ref|ZP_17428503.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG5X1-1]
gi|423471248|ref|ZP_17447992.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG6O-2]
gi|423557377|ref|ZP_17533680.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus MC67]
gi|401144519|gb|EJQ52048.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG5X1-1]
gi|401193185|gb|EJR00192.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus MC67]
gi|402432728|gb|EJV64784.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG6O-2]
Length = 392
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 159/392 (40%), Gaps = 60/392 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ +PG E + L+ A ++ +E R E + K A V T
Sbjct: 109 SKTAYFGIPGLEENSM---VLKSAADANKIYKHVEDRIREYAKTKNEADATIVIGGGGLT 165
Query: 261 GTPGNRE--------AALKVLSARKVQLVL---GYFVRCI-------RRVGEFEASVKQP 302
G E A ++ ++V+L+L G + + R EA
Sbjct: 166 GVELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATASLEARGVTF 225
Query: 303 ESGA-IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNR 359
+G + N+A ++ ++L+ + Q A+ +WT G PL+
Sbjct: 226 LTGLPVTNVAGNE------IDLK------DGQKIVANTFVWTGGVQGNPLIGE------- 266
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
L +N RG+A D L H +F GDS+ + + GRP P TAQ+A+Q + G+N
Sbjct: 267 -SGLEVN-RGRATVDAHLQSTSHKDVFVAGDSAVVFAADGRPYPPTAQIAWQMGELIGYN 324
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
L+AA+ + F N G + LGR DA +
Sbjct: 325 LYAALEGKAFEEFAPINSGTLASLGRKDAVAT 356
>gi|386332869|ref|YP_006029038.1| NADH dehydrogenase [Ralstonia solanacearum Po82]
gi|334195317|gb|AEG68502.1| NADH dehydrogenase [Ralstonia solanacearum Po82]
Length = 441
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 170/411 (41%), Gaps = 39/411 (9%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL-CPS 165
+ +V+LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKSLDRAA 96
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ V+G + G VL E + YD LVL++G+ VPG AE A A
Sbjct: 97 KTITVSGCVDAD-GTEVLPERA--IAYDMLVLAIGSVTHFFGVPGTAEHAIALDAASQAE 153
Query: 226 RVDRKLSELERRNFERLEEKGIVQA-INVETTICPTGTPG--------NREAALKVLSAR 276
R RKL R + G+ A V+ I G G N L
Sbjct: 154 RFRRKLIAACMR-----AQNGVGDARAQVDIAIVGAGATGVELSAELRNTAHVLAAYGLH 208
Query: 277 KVQLVLGYFVRCI----RRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLE 331
K+ + + I R + V + + + D + + ++E+ A+K
Sbjct: 209 KLDPLRDIRIHLIEGSPRILAALSERVSAETTKLLHKLNVDVITGERVVEVTDSAVKTGS 268
Query: 332 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD- 390
+ ADL +W G + P LPL+ GQ TL V+G I+A GD
Sbjct: 269 GKSIPADLTVWAAGIRA------PAILGELGLPLSRLGQVVVSRTLQVEGDDAIYAFGDC 322
Query: 391 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
+S + +P AQ A QQA + L + +P+ PF F++LG ++ LG A
Sbjct: 323 ASCPWPEASTSVPPRAQAAHQQATYLYKALCRRLQGKPVEPFGFKDLGSLVSLGHFSAV- 381
Query: 451 SPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLTKSAIDSV 499
G + G IG + + RL T +R+ V + + A+D+V
Sbjct: 382 ------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFVRMALDTV 426
>gi|159898966|ref|YP_001545213.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Herpetosiphon aurantiacus DSM 785]
gi|159892005|gb|ABX05085.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Herpetosiphon aurantiacus DSM 785]
Length = 429
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 106/431 (24%), Positives = 183/431 (42%), Gaps = 61/431 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ I+G GF GL A L KK VLL+DQ F+P+LY++ + ++ +IA
Sbjct: 3 KVIIIGAGFAGLRAAKTLAG------KKVDVLLIDQQNYHCFQPLLYQVATAGLEPEQIA 56
Query: 141 PRFADLLAN-TGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
++ N GV+F RV+ + S H+ T G +YD+L+++
Sbjct: 57 YPVRGIMHNWPGVRFLMARVEQIDRASKHV------VTTMGS---------FDYDYLIVA 101
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETTI 257
G + + +F L DA ++ + LS ER +ER + + QA++ +
Sbjct: 102 AGGQTNYFGNREIEQHSFGLKNLNDAEQLRNHLLSMFERAAYER--DPQVRQALHTFVVV 159
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES-----GAIPNIAA 312
T A++ +LV VR ++ + V E+ G +P
Sbjct: 160 GGGPTGVELAGAIR-------ELVKHVLVRDFPQLENSQVQVILLEATDKVLGMLPTRLQ 212
Query: 313 DKNSDK-----YILELQPAIKGLES--------QIFEADLVLWTVGSKPLLPHVEPPNNR 359
K + + L A++G + ++ + ++W G + VE +
Sbjct: 213 QKTLQRLEKMGVQVRLNTAVEGASADQVYLKGGEVIASHTLIWAAGVRG----VELAQSL 268
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
L R Q + D L + P +F +GD + L + +G+PLP A VA QQA A N
Sbjct: 269 ELALARGNRVQVQPD--LRLADDPNVFVVGDLAYL-EQAGKPLPQVAPVAIQQAVTAAKN 325
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ ++P F +++ G M +GRN AAV+ F G+ G +L+ L
Sbjct: 326 ILQQRQNQPTQTFIYRDRGSMATIGRN-AAVAHIF--GLQFWGFPAWVVWLFIHLMSLVG 382
Query: 480 DEHRLKVGVSW 490
+RL V ++W
Sbjct: 383 FRNRLVVLINW 393
>gi|254521239|ref|ZP_05133294.1| NADH dehydrogenase protein [Stenotrophomonas sp. SKA14]
gi|219718830|gb|EED37355.1| NADH dehydrogenase protein [Stenotrophomonas sp. SKA14]
Length = 426
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 92/394 (23%), Positives = 165/394 (41%), Gaps = 54/394 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + ++GGGF GL+ L ++ ++ LVD+ +F+P+LY++ + + A
Sbjct: 4 ERVPHLVVVGGGFAGLWATRALAR------ERIRITLVDRRNHHLFQPLLYQVATAGLSA 57
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA +L + + + R+ + D + + G ++YD L+
Sbjct: 58 PDIAAPLRHILGHQ--RNVEVRLGEVVAID----------KQARQIRMADGSTLDYDSLL 105
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG--IVQAINVE 254
L+ GA A+ A TL+DA + RKL FER E + +A +
Sbjct: 106 LATGATHAYFGNDQWADDAPGLKTLDDAIALRRKLL----LAFERAEAEPDPAKKAAWLS 161
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--------A 306
I G G A AR R + A V+ E+G
Sbjct: 162 FAIVGGGPTGVELAGTLAEIARHT------LRNEFRHIDPASAKVRLVEAGPRVLSSFPE 215
Query: 307 IPNIAADKNSDKYILELQPA--IKGLESQIFE-------ADLVLWTVGSKPLLPHVEPPN 357
+ ++ A + +K +E+ + ++SQ F+ A V+W G P
Sbjct: 216 VLSLKARRQLEKLGVEVLTGTPVSDIDSQGFKLGEQFVPARTVVWAAGV------AASPL 269
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
R D+PL+ G+ + L + HP +F GD +AL ++G+P+P A A Q +
Sbjct: 270 ARTLDVPLDRAGRVQVQPDLTLPDHPELFVAGDLAALNQANGKPVPGVAPAAKQMGKYVA 329
Query: 418 WNLWAAINDRPLL-PFRFQNLGEMMILGRNDAAV 450
+ A ++ +P PF++ + G + +GR A V
Sbjct: 330 EVIRARLHGKPAPGPFKYADYGNLATIGRMAAIV 363
>gi|225872948|ref|YP_002754405.1| pyridine nucleotide-disulfide oxidoreductase [Acidobacterium
capsulatum ATCC 51196]
gi|225794009|gb|ACO34099.1| pyridine nucleotide-disulfide oxidoreductase [Acidobacterium
capsulatum ATCC 51196]
Length = 422
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 167/400 (41%), Gaps = 44/400 (11%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
QV+LVD+S +F+P+LY++ + + +IA +L + K+ +L + +G
Sbjct: 29 QVVLVDRSNHHLFQPLLYQVATAVLAPGQIATPIRSVLHDQ-----KNATVIL--GNVVG 81
Query: 170 VNGPMACTHGGTVLLE----SGLIVEYDWLVLSLGAEPKLDVVPGAAEF---AFPFSTLE 222
++ T VL + + + YD+LVL+ GA D G +F F TL
Sbjct: 82 ID-----TEAKAVLADINDSKSVPIRYDFLVLATGAR---DAYFGHCDFERYTFGLKTLA 133
Query: 223 DACRV-DRKLSELERRNF-ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA----- 275
DA + +R LS E F E LE++ + V PTG A+ + S
Sbjct: 134 DAVALRNRILSVFEMAEFAEDLEQRQSLLTF-VLVGAGPTGVEMASAIAVLIQSTLKSDF 192
Query: 276 RKVQLVLGYFV---RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 332
R++ + + R R + F+ + + ++ + + + E+ +
Sbjct: 193 RRMDPAMARIILVERSDRVLDNFDPRLSMAAQRRLQSLGVELMLGQTVEEIDDTGVTIHG 252
Query: 333 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 392
Q A V+W G P P + L + G+ L V P +F +GD++
Sbjct: 253 QHIAARTVIWAAGVAP-----SPAGDWL-KAETDKSGRVLVHRDLSVPNLPEVFVVGDTA 306
Query: 393 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP-FRFQNLGEMMILGRNDAAVS 451
+ +G PLP AQVA QQ +A + A + D P P FR+ + G + + GR A +
Sbjct: 307 HF-EQNGHPLPGVAQVAIQQGQYAARVIAARVEDAPFAPMFRYLDKGNLAVAGRGFAVLQ 365
Query: 452 PSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+ + L G +L L + RL V V W+
Sbjct: 366 S---DKIKLSGFWAWWIWAAVHLRFLAGNNLRLSVSVQWM 402
>gi|408356209|ref|YP_006844740.1| oxidoreductase [Amphibacillus xylanus NBRC 15112]
gi|407726980|dbj|BAM46978.1| putative oxidoreductase [Amphibacillus xylanus NBRC 15112]
Length = 404
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 97/447 (21%), Positives = 176/447 (39%), Gaps = 103/447 (23%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I +LG G+ GL L+L+ + ++ ++ L+++ + L+ +G +
Sbjct: 5 KIVVLGAGYAGLTAILKLQH--AKIEQSIELTLINKHQYHYQTSWLHRNAAGSHSVNDTI 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
D+L V + V + P + + +SG YD+L++ LG
Sbjct: 63 FDLKDILDLQKVNLIEASVTDIDPKQQI-------------IKTDSGA-YPYDYLIIGLG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRK----LSELERRNFER--------------- 241
+E +PG E A+ +TL A R+ ++ L E + + R
Sbjct: 109 SEIDSFQIPGLKEHAYSITTLTRAMRLHQRILTILDEYRQTSMSRDLQFVIGGGGFTGVV 168
Query: 242 ------------LEEKGI------VQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 283
E+GI + +I E+T+ P E A++ L R+V+ LG
Sbjct: 169 LLGELTEQLPILCAERGIDYRKIKLLSIEYESTVLPEFDLELGEYAMQQLENRRVEFKLG 228
Query: 284 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 343
++ + S+K SG + ++ D L +WT
Sbjct: 229 TKIKSLN-----SNSIKIERSGIVEDLPVD-------------------------LFVWT 258
Query: 344 VGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 401
G + L+ + P G+ E ++ L V G+P I+ +GD + ++D GR
Sbjct: 259 AGVRGNHLIEQAKIPT---------MLGRVEVEQDLTVPGYPSIYVIGDVALVKDPKGRA 309
Query: 402 LPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 460
A +A Q+A A NL ++ ++PF F+N G + +G DA GVT
Sbjct: 310 YLPNADIAIQKAKTAVDNLLLKLSGSDEIIPFEFKNKGTIASIGAKDAI-------GVTA 362
Query: 461 DGPIGHSARKLAYLIRLPTDEHRLKVG 487
+G R +AYL +L + ++G
Sbjct: 363 NGR-RIFGRPVAYLKKLSDYQFLYEIG 388
>gi|386715194|ref|YP_006181517.1| NADH dehydrogenase [Halobacillus halophilus DSM 2266]
gi|384074750|emb|CCG46243.1| NADH dehydrogenase [Halobacillus halophilus DSM 2266]
Length = 406
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 99/416 (23%), Positives = 160/416 (38%), Gaps = 102/416 (24%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P I ILG G+GG+ TA++L+ + ++ V LV++ L+E +G +
Sbjct: 2 KNPNIVILGAGYGGIITAVKLQKSLGVNE--ANVTLVNKHSYHYQTTWLHENAAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
D++ + + F +D V + PS+ V+LE+G ++ YD+LV+
Sbjct: 60 HTRIPIKDVINTSKINFVQDTVTEIKPSEK-------------RVMLENGDLM-YDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDA---------------CRVDRK------------ 230
LG E +PG E AF ++ A D+K
Sbjct: 106 GLGYEAATFGIPGLKEHAFTIGSINSARLIRQHIEYNFAKYNNEADKKEERLNLVVGGAG 165
Query: 231 ------LSELERRNFERLEEKGI----VQAINVETTICPTGTPGNR----EAALKVLSAR 276
+ EL R + E I V+ INVE P+ PG E A+ L R
Sbjct: 166 FTGIEFVGELANRVPQLCREYDIPREKVRIINVEA--APSALPGFDPELVEYAMNSLEGR 223
Query: 277 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 336
V+ +G ++ + +K + E K + +
Sbjct: 224 GVEFKIGAMIKEV-------------------------TENKLVFE-----KDEQREEIP 253
Query: 337 ADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 394
+ V+W G + L+ +N RG+ + L GH +F +GD + L
Sbjct: 254 TNTVVWAAGVRGNSLVEQAGFESN---------RGRTPVSDDLRPAGHDDVFIVGDCALL 304
Query: 395 -RDSSGRPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 448
+ + RP P TAQ+A Q A+ NL + D+ L PF G + LG DA
Sbjct: 305 INEETERPYPPTAQIAIQMAEQTADNLTKLVKGDKHLEPFTPDLKGTVASLGHKDA 360
>gi|269925710|ref|YP_003322333.1| NADH dehydrogenase (ubiquinone) [Thermobaculum terrenum ATCC
BAA-798]
gi|269789370|gb|ACZ41511.1| NADH dehydrogenase (ubiquinone) [Thermobaculum terrenum ATCC
BAA-798]
Length = 459
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 92/399 (23%), Positives = 171/399 (42%), Gaps = 48/399 (12%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
VLLVD++ +F P+LY++ +G V+ + G +F + V+ + D
Sbjct: 65 VLLVDRANFHLFTPILYQVATGGVEPDNVTHPVRYATQADGFRFQESNVQKISVEDK--- 121
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DR 229
C V + G I YD+LV++LGA + A E +F T+ D + +
Sbjct: 122 -----C-----VYTDDGPIY-YDYLVVALGATNNFFGLASAEENSFTLKTISDGIELRNH 170
Query: 230 KLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSAR------------K 277
+ ER E+ E V PTG A+L+ L++ +
Sbjct: 171 IIDAFERAEVEQDPEVRRRLLTFVIVGAGPTGV--ELAASLRDLASHVLLKEYPGIDPGE 228
Query: 278 VQLVLGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPA-IKGLESQIF 335
V++VL V + R+ + ++Q + + + + + +++ ++ +
Sbjct: 229 VRVVL---VEALDRILLALDDQLRQNAMKTLQSKGVEVLLNTPVADVEKGGVRIKDGSFI 285
Query: 336 EADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 393
++ V+WT G K PL+ + P + D G+ ++ + + HP I+ +GD +
Sbjct: 286 PSETVVWTAGVKANPLVADL--PGEKGRD------GRVRVNDFMQLPDHPEIYVIGDCAM 337
Query: 394 -LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 452
RPLP A VA A N+ + + PL P +++ GE++ LG+N+A +
Sbjct: 338 YFMPGEQRPLPPNAPVAIAGGKTAAINIIHTLKNEPLEPLKYKYQGELVSLGKNNAVAN- 396
Query: 453 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+ G+ G IG + YL +L +++ V V WL
Sbjct: 397 --IMGIKFSGFIGWLVWRAVYLYKLEGFKNKASVLVDWL 433
>gi|428768989|ref|YP_007160779.1| NADH dehydrogenase (ubiquinone) [Cyanobacterium aponinum PCC 10605]
gi|428683268|gb|AFZ52735.1| NADH dehydrogenase (ubiquinone) [Cyanobacterium aponinum PCC 10605]
Length = 454
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 100/443 (22%), Positives = 180/443 (40%), Gaps = 75/443 (16%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+GGGF GLY A L + +V L+D+ +F+P+LY++ +G + EI
Sbjct: 11 PHVVIVGGGFAGLYAAKEL------GNAPVKVTLIDKRNFHLFQPLLYQVATGSLSPAEI 64
Query: 140 -APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+P + N D V + P V++ G +V YD+LV+
Sbjct: 65 CSPLRLIVGRNKNTHVVLDEVVDINPEQK-------------QVIMREG-VVNYDYLVIG 110
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL----SELERRNFERLEEKGIVQAINVE 254
G + A ++E+A + R++ E E+ + + +++ + AI
Sbjct: 111 TGVSHHYFGNDHWEQDAPGLKSIENALDIRRRIFLAFEEAEKLSSPQEKQEWLTFAI--- 167
Query: 255 TTICPTGTP----------GNREAALKVLSARKVQLVLGYFVRCIRRV---------GEF 295
PTG + + K + K ++VL + + RV +
Sbjct: 168 VGGGPTGVELAGAIAEIAHKSIKKDFKEIDTTKARIVL---IEGMNRVLPPYPEDLSAKA 224
Query: 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
+AS+++ + N N DK L ++ G + + +A +LW G K
Sbjct: 225 QASLEELGVEVLTNRMV-TNIDKNTLNIR---HGEQEETIKARTILWAAGVKA------- 273
Query: 356 PNNRLHDLPLNARGQAETDET--------LCVKGHPRIFALGDSSALRDSSGRPLPATAQ 407
+ L ++ + R AETD L +K HP IF +GD + +PLP A
Sbjct: 274 --SGLSEI-IADRTSAETDRAGRIMVEPDLSIKNHPNIFVVGDLAHFAHQDNKPLPGIAP 330
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 467
VA ++ + + A R + F + + G + ++G N A + FV+ L G
Sbjct: 331 VAMEEGRYVAGLIVAKEKGRQIESFSYVDKGSLAVIGNNHAVANLGFVK---LSGISAWL 387
Query: 468 ARKLAYLIRLPTDEHRLKVGVSW 490
A++ L +++L V + W
Sbjct: 388 VWVFAHIYYLIEFDNKLLVMLQW 410
>gi|332638625|ref|ZP_08417488.1| pyridine nucleotide-disulfide family oxidoreductase [Weissella
cibaria KACC 11862]
Length = 407
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 158/386 (40%), Gaps = 42/386 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSERFVFKPMLYELLSGEVDA 136
+K + ILG G+ GL + L+ L + D + LVDQ+ L+E+ SG + A
Sbjct: 3 EKTNVVILGAGYAGL---MALKVLQKRADASFMSITLVDQNPYHYEATDLHEVASGALTA 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
I AD++ +F +DRV + + H V L + + +D+L+
Sbjct: 60 DRITYPIADVVNPEMTEFIEDRVTKVDRAQH-------------RVELANHESIGFDYLI 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--LERRNFERLEEKGIVQAINVE 254
+ LG E + +PG E+A P +++ A R+ + +++ R IV A
Sbjct: 107 IGLGFESEDFGIPGVQEYALPMDSVDSAERIQQHITDEMFAYRQDNDPRHLHIVVAGAGF 166
Query: 255 TTICPTGT-PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 313
T + G NRE ++ Q+ + R + F + + A
Sbjct: 167 TGVELLGALSENRERYAEMAGVAPNQIQIMSVDGAKRPLSVFSQHLVDYGLAVLRGRGAV 226
Query: 314 KNSDKYILELQPAIKGL------ESQIFEADLVLWTVG----SKPLLPHVEPPNNRLHDL 363
S K I ++P + ES A ++WT G S + NR+
Sbjct: 227 IESGKGINAIEPDVMHYADRETGESGEVIAGTIIWTTGVRGSSVMAASGYQAKRNRMSVT 286
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGWNLWA 422
P L RI+ +GD +A DS +G+ LP TAQ+A + AG N+ A
Sbjct: 287 PY-----------LQDPADDRIYIVGDVAAATDSETGQILPTTAQLALVMGEIAGKNVLA 335
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDA 448
A+ L PF +++LG + +G A
Sbjct: 336 AVTGYELTPFTYKSLGTVCSIGNTSA 361
>gi|416976175|ref|ZP_11937613.1| NADH dehydrogenase [Burkholderia sp. TJI49]
gi|325520248|gb|EGC99414.1| NADH dehydrogenase [Burkholderia sp. TJI49]
Length = 433
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 93/369 (25%), Positives = 151/369 (40%), Gaps = 26/369 (7%)
Query: 92 LYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG 151
L A RL V + + +V+LVD+ +KP+L+E SG D +A G
Sbjct: 10 LQLATRLADTVGRRGQA-EVVLVDRYPTHFWKPLLHEAASGHRDPASHTIEYAAQAKRHG 68
Query: 152 VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGA 211
+F + ++ + + + G + G +L L YD LVL++G+ VPGA
Sbjct: 69 FRFVQGALQRVDRAARIATIGAVHDADGTEILPPREL--RYDDLVLAVGSVTNFFNVPGA 126
Query: 212 AEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGN------ 265
A A P ++ A RK + E++ +A V ++ G G
Sbjct: 127 ARHALPLENVDQAEDFRRKFLAACTKANHLAEQQPAQRAAPVCISVIGAGATGVELAGAL 186
Query: 266 REAALKVLSARKVQLVLG--YFVRCI----RRVGEFEASVKQPESGAIPNIAADKNSDKY 319
R A ++ + R LV +R I R + +A + + + D +D
Sbjct: 187 RHAIQQLTTYRFKALVSARDVHIRLIESGPRILPALDARLSDKMHAQLRTLNVDVLTDTR 246
Query: 320 ILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDET 376
+ E+ AI + +D+ +W G V P L + LN GQA +T
Sbjct: 247 VAEVGADAITTASGERLPSDITIWAAG-------VAGPAILRELDGIALNRSGQAIVTDT 299
Query: 377 LCVKGHPRIFALGDSSALRDSSGRP-LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQ 435
L P ++A GD +A S LP AQVA QQA + G + +P+ F F+
Sbjct: 300 LQTPDDPHVYAFGDCAACPSSGATGFLPPRAQVAHQQAVYLGNAFARRLAGKPVDGFTFR 359
Query: 436 NLGEMMILG 444
+ G ++ LG
Sbjct: 360 DAGTVVSLG 368
>gi|158339282|ref|YP_001520459.1| pyridine nucleotide-disulfide oxidoreductase [Acaryochloris marina
MBIC11017]
gi|158309523|gb|ABW31140.1| pyridine nucleotide-disulphide oxidoreductase [Acaryochloris marina
MBIC11017]
Length = 433
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 109/445 (24%), Positives = 179/445 (40%), Gaps = 76/445 (17%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P RI ++G GFGG+ A L +V L+D+ F P+LY++ + ++
Sbjct: 3 PVHNPQRIVVVGAGFGGMQAAQSLA------HSGAEVCLIDRHNYNTFVPLLYQVAAAQL 56
Query: 135 DAWEIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ IA P L +F V+ + +H V A ++ YD
Sbjct: 57 EPESIAYPLRTVLRRAPRTRFLMAEVQRI-DFEHQVVETDKA-------------VISYD 102
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFER-LEEKGIVQAIN 252
+LV++ G++ + VPGA +FAFP TL+ A + + L+R FE+ ++E VQ
Sbjct: 103 YLVMATGSQTQFLGVPGAEDFAFPLQTLDHAIALRNHI--LQR--FEQVVQEHDPVQRQQ 158
Query: 253 VETTICPTGTPGNREAALKVLSARK-------------VQLVL-----GYFVRCIRRVGE 294
+ T + G P E A ++ ++ +++VL V R+G
Sbjct: 159 LLTFVIVGGGPTGVEMAGTLVELKRSLRHDYPTLNWSQMRIVLVQSGDNLLVNLPNRLGH 218
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
+ + K + G N+ + + A++ + V+W G + LP V
Sbjct: 219 Y-TTRKLRQLGI--NVYFKTRVRRVT---EQAVEFSDGSTLPTGTVVWAAGLEAALPDVT 272
Query: 355 PP--NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
P R H L + TL + H ++A+GD A G+PL A A QQ
Sbjct: 273 APLTTARKHKL--------KVRPTLQLIDHDNVYAIGD-LAYTQQHGKPLAGVAPEALQQ 323
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI---GHSAR 469
NL + + PF + N G + I+G GV GP G
Sbjct: 324 GVAVAHNLRRQLRGKSPKPFSYFNKGRLAIIG---------VYAGVGKIGPFLLTGFLPW 374
Query: 470 KL---AYLIRLPTDEHRLKVGVSWL 491
L +L+ LP +RL V ++WL
Sbjct: 375 LLWLSVHLVYLPGFRNRLMVLLNWL 399
>gi|322419925|ref|YP_004199148.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacter sp. M18]
gi|320126312|gb|ADW13872.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacter sp. M18]
Length = 418
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 174/432 (40%), Gaps = 57/432 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ RI I+G GFGG+ TA L K V+LVD++ +F+P+LY++ + ++
Sbjct: 3 RKRIVIVGMGFGGIRTARVLAG------KGHDVILVDRNNYHLFQPLLYQVATAGLEQES 56
Query: 139 IAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA + + G QF V GV+ VL ++G ++ YD+LV+
Sbjct: 57 IAHSVRAMARSWPGTQFQLAEVT--------GVD-----FTAREVLTDTG-VIPYDYLVI 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQ-----AIN 252
G+ + +F L DA E R + E +V+
Sbjct: 103 GAGSVTNYFGLESVEGNSFDLKELADA--------ETLRNHILTAFESAVVEPDPARKRA 154
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGY--FVRCIRRVGEFEAS----VKQPESGA 306
+ T + G P E A ++ L Y RV EA+ PE
Sbjct: 155 LMTFVIVGGGPTGVEFAGALIELVHFVLAKDYPGLSTHTARVVLVEATDQLLAAMPEKQR 214
Query: 307 IPNIAADKN-SDKYILELQPAIKGLE------SQIFEADLVLWTVGSKPLLPHVEPPNNR 359
+ ++ S + +L + G E I A + W+ G K P
Sbjct: 215 KYTLKKLRSMSVEVLLNARVTDAGPERVMLHDGAIIPAHTLFWSAGVK------AAPIAA 268
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
+ D P G+ L + GHP +F +GD + L + G LP TA VA Q +AG
Sbjct: 269 VLDAPRTTGGRIPVGPELNLPGHPEVFIIGDMAYL-EQEGSALPMTAPVAMQMGIYAGRA 327
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ A L PFRF N G M +GRN AAV+ +F G+ G + L +L L
Sbjct: 328 ILAKEQGATLPPFRFHNKGTMATIGRN-AAVASAF--GMDFRGYLAWLVWLLLHLYYLIG 384
Query: 480 DEHRLKVGVSWL 491
+R+ V ++W+
Sbjct: 385 FRNRIVVMLNWV 396
>gi|338997759|ref|ZP_08636451.1| NADH dehydrogenase [Halomonas sp. TD01]
gi|338765388|gb|EGP20328.1| NADH dehydrogenase [Halomonas sp. TD01]
Length = 432
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 108/437 (24%), Positives = 185/437 (42%), Gaps = 48/437 (10%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGG GGL A RL + + K+ +++L+D++ V+KP+L+EL +G +++
Sbjct: 4 PRIVIVGGGAGGLALATRLGRTLGKK-KRAEIVLLDRNATHVWKPLLHELATGVLNS--- 59
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV------EYD 193
+ D ++ ++ + L G++ H + E G+ V YD
Sbjct: 60 SMDEVDYRGHSSAHHYRYQRGSLN-----GLDREQKVIHLAPIKDEDGVEVLPSRKLTYD 114
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINV 253
+LV++LG+ G AE + + A R + F R + + Q +
Sbjct: 115 YLVIALGSISNDFGTTGVAEHCHFIDSPQQAKAFQRDMIN----TFLRYTDPTLRQNAEL 170
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR----VGEFEAS----------V 299
I G G E + ++L A + L+ Y V + V EA+ +
Sbjct: 171 TIGIVGGGATG-VELSAELLDASR--LLNAYGVTAVDHQTISVHLIEAAPRLLPGLSERI 227
Query: 300 KQPESGAIPNIAADKNSDKYILELQPA--IKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
+ + ++ ++ I E Q + G + ++ E DL +W G K PP
Sbjct: 228 SETVQQELESMGVTVHAGTAIQEAQQYQLVTG-DGEVIETDLNVWAAGIKA------PPF 280
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
DL N + Q +TL P IFA+GD + + +P AQ A QQA
Sbjct: 281 LAELDLTTNKKNQISVHQTLQSVDDPYIFAMGDCADCPQGEDKTVPPRAQAAHQQAKVLA 340
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAA---VSPSFVEGVTLDGPIGHSARKLAYL 474
NL +N +PL F +++ G ++ L R DA + S G+ L+G + A Y
Sbjct: 341 KNLVHCLNSKPLQNFTYRDHGSLVSLARYDAVGNLMRSSASRGLFLEGWLARQAYASLYR 400
Query: 475 IRLPTDEHRLKVGVSWL 491
+ + K G++WL
Sbjct: 401 MHQLSIHGAPKTGLAWL 417
>gi|365865807|ref|ZP_09405441.1| putative NADH dehydrogenase [Streptomyces sp. W007]
gi|364004751|gb|EHM25857.1| putative NADH dehydrogenase [Streptomyces sp. W007]
Length = 467
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 111/444 (25%), Positives = 187/444 (42%), Gaps = 68/444 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKK--PQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
RI ++GGG+ G+YTALRL+ + Q K ++++V ++P L E +G +
Sbjct: 2 RILVVGGGYVGMYTALRLQRKLKQRLKSGDAEIVVVTPEPYMTYQPFLPEAAAGSISPRH 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ +L + + + R + + +A GT LE G YD +V++
Sbjct: 62 VVVPLRRVLNDCTIVIGEARS--IDHAKRTATVTTLATGEDGTGALEIG----YDEIVIA 115
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
G+ + VPG AEF F T+E+A + RN +++ +++ +
Sbjct: 116 PGSVSRTLPVPGLAEFGIGFKTVEEAIGL---------RNH-------VIEQMDIASA-- 157
Query: 259 PTGTPGNREAALK----------VLSARKVQLVLGYFVRCIRRVGE-------FEASVK- 300
T P R+AAL V + +++ + Y R + EAS +
Sbjct: 158 -TRDPAIRDAALTFVFVGGGYAGVEALAELEDMARYTARYYHNIKPADLKWILVEASGRI 216
Query: 301 QPESG-AIPNIAADKNSDKYI-LELQPAIKGLESQI--------FEADLVLWTVGSKPLL 350
PE G A+ A + + I + L + E ++ F ++WT G KP
Sbjct: 217 LPEVGEAMGTYAIGELRGRNIDVRLDTRLDTCEDRVAVLSDGSRFPTRTLVWTAGVKP-- 274
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS----GRPLPATA 406
P DLPL RG+ TL V+ P +A GD++A+ D + GR A
Sbjct: 275 ----APLLAATDLPLTERGRLRCTATLGVEDMPHAWAAGDAAAVPDLTASEPGRETAPNA 330
Query: 407 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 466
Q A +QA N+ A+++ RPL +R +G + LG + + V G L G
Sbjct: 331 QHAVRQAKVLADNVLASVDGRPLKEYRHAYVGSVASLGLHKGV---AHVYGRKLKGYPAW 387
Query: 467 SARKLAYLIRLPTDEHRLKVGVSW 490
+ +L R+PT + +V W
Sbjct: 388 LMHRTYHLSRVPTFNRKARVLAEW 411
>gi|209517787|ref|ZP_03266622.1| NADH dehydrogenase [Burkholderia sp. H160]
gi|209501733|gb|EEA01754.1| NADH dehydrogenase [Burkholderia sp. H160]
Length = 451
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 157/366 (42%), Gaps = 34/366 (9%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV LVD+ ++KP+L+E+ +G +D + +A G +F + + L ++
Sbjct: 34 QAQVTLVDRYPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELTGLDRANR 93
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
G + G +L E L EYD LV+++G+ V GAAEF+ T+ A R
Sbjct: 94 RITLGTVLDDDGAELLPEREL--EYDTLVIAIGSTTAFFGVKGAAEFSIALDTVGQAERF 151
Query: 228 DRKL----SELERRNFERLEEK---GIVQAIN--VETTICPTGTPGNREAA-----LKVL 273
++L E + E +E + G + ++ I G G +A +VL
Sbjct: 152 RKRLIAACMRAEHQAHEPVESRPGPGTWSSSEPRIQVAIVGGGATGVELSAELRNTAQVL 211
Query: 274 SA---------RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ 324
SA V +VL R + + V + + + + + E+
Sbjct: 212 SAYGLHKLDPRHDVGIVL--IEAGPRILPALQERVSTATAELLTKLGVKLMIGETVAEVA 269
Query: 325 PA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHP 383
P I+ ADL +W G K P V +L LP+N GQ TL +
Sbjct: 270 PGYIRTASGHTVRADLTVWAAGIKA--PAVLA---QLDGLPVNRLGQLVVRRTLQTEIDD 324
Query: 384 RIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 442
+FALGD +A + R +P AQ A QQA F L A ++++PL F +++ G ++
Sbjct: 325 NVFALGDCAACEWPGNERNVPPRAQAAHQQASFMMKALAARLDNKPLPEFTYRDFGSLVS 384
Query: 443 LGRNDA 448
LG A
Sbjct: 385 LGHFSA 390
>gi|158334388|ref|YP_001515560.1| pyridine nucleotide-disulfide oxidoreductase [Acaryochloris marina
MBIC11017]
gi|158304629|gb|ABW26246.1| pyridine nucleotide-disulphide oxidoreductase [Acaryochloris marina
MBIC11017]
Length = 415
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 167/430 (38%), Gaps = 65/430 (15%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD-AWEIAPR 142
I+G GFGGL TA+ L +V L+D++ F P+LY++ + ++ W P
Sbjct: 2 IIGAGFGGLQTAVSL------GGAAARVTLIDRNNYHTFVPLLYQVATATLEPEWIALPI 55
Query: 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
L VQF + V+ + + + + + ++YD+LVL G++
Sbjct: 56 HKLLRRYKNVQFVQGNVETVDLT--------------ARRVQTAHITLQYDYLVLGTGSQ 101
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL-----------ERRNFERLEEKG----I 247
L VPGA E A P TLEDA + L + ERR + G
Sbjct: 102 THLQGVPGAKEHALPLRTLEDAIALKHHLLQCIEQAAQTKDPDERRQLLTIAIVGGGATG 161
Query: 248 VQAINVETTIC----PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPE 303
V+ +C P P R+ ++++ + +L F +R + ++
Sbjct: 162 VEMAGALVELCHQSWPKDYPWLRDDPVQLILVQSGSELLPEFPHPLRTYTYKKLAILGVN 221
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 363
+A+ + LEL + +WT G K P E L
Sbjct: 222 IQVETKVASVHATH---LELDSGTR------IPCATTIWTAGVKAAHPPTET------AL 266
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
P R + +L ++ +P ++ALGD++ + D + L A A QQ NL
Sbjct: 267 PQGHRDKIPVLSSLQLQQYPEVYALGDAAQVPDQT---LAGVAPEALQQGVCTARNLRRQ 323
Query: 424 INDRPLLPFRFQNLGEMMILG--RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
+ PFR+ N G + I+G + P L G +G + + P
Sbjct: 324 LKGLTPQPFRYFNKGRLAIIGCFSGVGKIGP-----FPLRGFLGWFLWLAVHWVYSPGYR 378
Query: 482 HRLKVGVSWL 491
+RL + V+WL
Sbjct: 379 NRLMILVTWL 388
>gi|116075668|ref|ZP_01472927.1| hypothetical protein RS9916_39421 [Synechococcus sp. RS9916]
gi|116066983|gb|EAU72738.1| hypothetical protein RS9916_39421 [Synechococcus sp. RS9916]
Length = 502
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 102/435 (23%), Positives = 168/435 (38%), Gaps = 51/435 (11%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ P + I+GGGF G+ L + +V L+D+ +F+P+LY++ +G V
Sbjct: 18 RHAPHVVIVGGGFAGVSACKALA------NADVRVTLIDKRNFNLFQPLLYQVATGLVSR 71
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A L+ VQ V + P+D V A +YD L
Sbjct: 72 GDVATPLRQLVGKQRNVQVLLGEVTEINPTDKQIVFNSKA--------------YDYDHL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
VL+ G+ FA P LE A + R+L + E+ ++ Q + +T
Sbjct: 118 VLATGSGSTFFGHEQWRTFAPPMKILEHAEEIRRRLL-MAIEQAEQSPDEAARQFL--QT 174
Query: 256 TICPTGTPGNREAA------LKVLSARKVQLVLGYFVRCI------RRVGEFEASVKQPE 303
+ G P E A ++ R+ + + R + R + S+ +
Sbjct: 175 VVIVGGGPTGCEMAGAVSELMRNAMRREFKQLNPDHTRIVLVDPGERLLKAMPESLSKQA 234
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL------VLWTVGSKPLLPHVEPPN 357
+ + + + +QP + + E DL V+WT G +P H+
Sbjct: 235 QTTLEKLGVEMQFKARVQTMQPGEVTMSTP--EGDLRLQAATVIWTAGVRP--SHLGKKL 290
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFA 416
LN G+ +K HP I +GD S SSG PLP A A Q F
Sbjct: 291 ADATGCELN-HGRVVVQPDFSIKEHPEIRVVGDLCSYHHTSSGNPLPGMAGPATQAGGFV 349
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
G ++ A + F + + G M +L R DA + G G IG LA+L
Sbjct: 350 GKDIAAIVAGSKRPNFNWFDFGSMAVLDRVDAVAD---LRGFKFSGGIGWILWALAHLAF 406
Query: 477 LPTDEHRLKVGVSWL 491
+P E+R + + W+
Sbjct: 407 MPERENRWTLLIKWM 421
>gi|170696960|ref|ZP_02888056.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria IOP40-10]
gi|170138134|gb|EDT06366.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria IOP40-10]
Length = 452
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 163/388 (42%), Gaps = 28/388 (7%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL A RL + + + V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLQLATRLGDTLGRRGQA-DVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + + + + + G +L + L +YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALHRVDRAARTATIAAVQDADGTEILPQREL--DYDELVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
++G+ VPGAA A P L+ A RK + E++ A + +
Sbjct: 132 AVGSVTNFFNVPGAARHALPLENLDQAEDFRRKFLAACTKANHLAEQQPARPAAPICINV 191
Query: 258 CPTGTPGN------REAALKVLSARKVQLVLG--YFVRCI----RRVGEFEASVKQPESG 305
G G R A ++ + R LV +R I R + +A +
Sbjct: 192 IGAGATGVELAAALRHAIQQLTTYRFKALVSARDVHIRLIEGGPRILPALDARLSARMHA 251
Query: 306 AIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHD 362
+ + D +D + E+ A+ + +D+ +W G V P L D
Sbjct: 252 QLRTLNVDVLTDTRVAEVGADAVTTAAGERLASDITIWAAG-------VAGPAILRELGD 304
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSAL--RDSSGRPLPATAQVAFQQADFAGWNL 420
+ LN Q +TL P ++A GD +A D+SG LP AQVA QQA + G L
Sbjct: 305 IALNRSNQVIVTDTLQTPDDPHVYAFGDCAACPSADASGF-LPPRAQVAHQQAVYLGEAL 363
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ +P+ F F++ G ++ LG+ A
Sbjct: 364 ARRLAGKPVAGFTFRDAGTVVSLGQAGA 391
>gi|409358527|ref|ZP_11236890.1| NADH dehydrogenase [Dietzia alimentaria 72]
Length = 477
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 114/472 (24%), Positives = 184/472 (38%), Gaps = 65/472 (13%)
Query: 63 SEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122
+E E+ T P ++ R+ I+G GFGGL+ A +LE V LV ++ +F
Sbjct: 2 TEPETDQVNATAPAGRRHRVVIIGSGFGGLFAAQQLEK------ADVDVTLVAKTGHHLF 55
Query: 123 KPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTV 182
+P+LY++ +G + EIAP +L + K+ +L D + V G +
Sbjct: 56 QPLLYQVATGILSVGEIAPPTRLILRDQ-----KNATVVLGDVDKIDVAAKKVHASAGHI 110
Query: 183 LLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFER 241
G +EYD LV++ GA +A T++DA + R L E+
Sbjct: 111 ----GFDLEYDSLVVAAGANQSYFGNDHFERWAPGMKTVDDALELRSRILGCFEQAEVID 166
Query: 242 LEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV-- 299
EE+ + PTG ++ + +L RR+ A V
Sbjct: 167 DEEERRRLLTFIIVGAGPTGVE---------MAGQVAELAQHTLKDSFRRIDPASARVIL 217
Query: 300 ------KQPESGAIPNIAADKNSDKYILELQ-------PAIKGLESQ-------IFEADL 339
P G AA +K +E+Q G+E + +A
Sbjct: 218 LDAAPAVLPPFGNKLGNAARARLEKMGVEIQLNAMVTNVDYHGIEVKDPDGSVRRIDASC 277
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 399
+W+ G K + D ++ G+ ++ L + GHP IF +GD +L +
Sbjct: 278 KIWSAGVKA--SSLGKQLAEQTDAEIDRAGRVLVEKDLSLPGHPEIFVVGDMMSLDN--- 332
Query: 400 RPLPATAQVAFQQADFAGWNLWAAI------NDRPLLPFRFQNLGEMMILGRNDAAVSPS 453
LP AQVA Q +A + A + ++RP PF++ + G M + R A V
Sbjct: 333 --LPGVAQVAIQGGKYAAKQIVAGVEKGKTPSERP--PFKYFDKGSMATVSRYSAVVKMG 388
Query: 454 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVALLQST 505
+E + LAYLI ++RL SW D + L ST
Sbjct: 389 RIEISGFIAWVMWLIVHLAYLIGF---KNRLTAMFSWGMHMGGDHRSQLTST 437
>gi|171315604|ref|ZP_02904839.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria MEX-5]
gi|171099275|gb|EDT44034.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria MEX-5]
Length = 452
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 103/389 (26%), Positives = 162/389 (41%), Gaps = 28/389 (7%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL A RL + + + V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLQLATRLGDTLGRRGQA-DVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + + + + + G +L + L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALHRVDRAARTTTIAAVQDADGTEILPQREL--GYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
++G+ VPGAA A P L+ A RK + E++ A + +
Sbjct: 132 AVGSVTNFFNVPGAARHALPLENLDQAEDFRRKFLAACTKANHLAEQQPERPAAPICINV 191
Query: 258 CPTGTPGN------REAALKVLSARKVQLVLG--YFVRCI----RRVGEFEASVKQPESG 305
G G R A ++ + R LV +R I R + + +
Sbjct: 192 IGAGATGVELAAALRHAIQQLTTYRFKALVSARDVHIRLIEGGPRILPALDERLSARMHA 251
Query: 306 AIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHD 362
+ + D +D + E+ A+ + +D+ +W G V P L D
Sbjct: 252 QLRALNVDVRTDTRVAEVGADAVTASTGERLASDITIWAAG-------VAGPAILRELGD 304
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSAL--RDSSGRPLPATAQVAFQQADFAGWNL 420
+ LN Q +TL P ++A GD +A D+SG LP AQVA QQA + G L
Sbjct: 305 IALNRSNQVIVTDTLQTPDDPHVYAFGDCAACPSADASGF-LPPRAQVAHQQAVYLGEAL 363
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDAA 449
+ +P+ F F++ G ++ LGR AA
Sbjct: 364 ARRLVGKPVAGFTFRDAGTVVSLGRAGAA 392
>gi|163942789|ref|YP_001647673.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Bacillus weihenstephanensis KBAB4]
gi|229014256|ref|ZP_04171376.1| NADH dehydrogenase-like protein yjlD [Bacillus mycoides DSM 2048]
gi|229062738|ref|ZP_04200043.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH603]
gi|229135904|ref|ZP_04264668.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BDRD-ST196]
gi|229169789|ref|ZP_04297487.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH621]
gi|423369065|ref|ZP_17346496.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD142]
gi|423490238|ref|ZP_17466920.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BtB2-4]
gi|423495962|ref|ZP_17472606.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus CER057]
gi|423497244|ref|ZP_17473861.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus CER074]
gi|423513463|ref|ZP_17489993.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuA2-1]
gi|423519754|ref|ZP_17496235.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuA2-4]
gi|423595732|ref|ZP_17571762.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD048]
gi|423597655|ref|ZP_17573655.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD078]
gi|423660101|ref|ZP_17635270.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VDM022]
gi|423670620|ref|ZP_17645649.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VDM034]
gi|163864986|gb|ABY46045.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Bacillus weihenstephanensis KBAB4]
gi|228613691|gb|EEK70818.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH621]
gi|228647566|gb|EEL03637.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BDRD-ST196]
gi|228716498|gb|EEL68201.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus AH603]
gi|228747033|gb|EEL96916.1| NADH dehydrogenase-like protein yjlD [Bacillus mycoides DSM 2048]
gi|401078421|gb|EJP86732.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD142]
gi|401149798|gb|EJQ57265.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus CER057]
gi|401157895|gb|EJQ65291.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuA2-4]
gi|401162964|gb|EJQ70317.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus CER074]
gi|401221626|gb|EJR28240.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD048]
gi|401239187|gb|EJR45619.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VD078]
gi|401294907|gb|EJS00532.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VDM034]
gi|401303762|gb|EJS09323.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus VDM022]
gi|402429917|gb|EJV61999.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BtB2-4]
gi|402445707|gb|EJV77576.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus HuA2-1]
Length = 392
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 158/392 (40%), Gaps = 60/392 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V IA
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ +PG E + L+ A ++ +E R E + K A V T
Sbjct: 109 SKTAYFGIPGLEENSM---VLKSAADANKIYKHVEDRIREYAKTKNEADATIVIGGGGLT 165
Query: 261 GTPGNRE--------AALKVLSARKVQLVL---GYFVRCI-------RRVGEFEASVKQP 302
G E A ++ ++V+L+L G + + R EA
Sbjct: 166 GVELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATASLEARGVTF 225
Query: 303 ESG-AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNR 359
+G + N+A ++ ++L+ + Q A+ +WT G PL+
Sbjct: 226 LTGLPVTNVAGNE------IDLK------DGQKIVANTFVWTGGVQGNPLIGE------- 266
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
L +N RG+A D L H +F GDS+ + GRP P TAQ+A+Q + G+N
Sbjct: 267 -SGLEVN-RGRATVDAHLQSTSHKDVFVAGDSAVVFSPDGRPYPPTAQIAWQMGELIGYN 324
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
L+AA+ + F N G + LGR DA +
Sbjct: 325 LYAALEGKAFEEFAPINSGTLASLGRKDAVAT 356
>gi|443309114|ref|ZP_21038877.1| NADH dehydrogenase, FAD-containing subunit [Synechocystis sp. PCC
7509]
gi|442780841|gb|ELR90971.1| NADH dehydrogenase, FAD-containing subunit [Synechocystis sp. PCC
7509]
Length = 439
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 98/425 (23%), Positives = 176/425 (41%), Gaps = 43/425 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K I ++G GFGGL A L VLL+D++ F P+LY++ + +++
Sbjct: 15 QKFSIVVIGAGFGGLQAAKSLAR------SGKDVLLIDRNNYHTFVPLLYQVATAQIEPE 68
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA +L F V+ + S+ V+ L ++Y++LV+
Sbjct: 69 LIAYPVRTILRRRYGHFLMAEVEQIDFSER--------------VIRTDRLDIQYNYLVV 114
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-------SELERRNFERLEEKGIV-- 248
+ G++ + V GAAEFA P TLE+A + ++ S LE + + L IV
Sbjct: 115 ATGSQTQYLGVAGAAEFALPLRTLEEAVTLRDRIFACFEAASRLEPEHRQHLLTFAIVGG 174
Query: 249 QAINVETTICPTGTPGNR-EAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI 307
A VE +R L+ R+V+L L R + E A + +
Sbjct: 175 GATGVEIVGAFVELLRSRIRREYPSLNWREVKLSL--LQASDRLLTELPAKLGLAAQKYL 232
Query: 308 PNIAADKNSDKYILELQPAIKGL-ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 366
+ D + + ++ L + Q V+W G + +P + +L +
Sbjct: 233 QKLGVDVRLETRVKQISDTEVYLSDGQKISTATVIWVAGLEAAIPDLS------EELLKS 286
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
++G+ TL +P ++A+GD++ + + + +PL A A QQ N+ +
Sbjct: 287 SKGKLLVRPTLQSLTYPNVYAIGDAAYV-EQANKPLSGVAPEALQQGVTVAQNITRQLRG 345
Query: 427 RPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 486
+ PFR+ N G + I+G + + G + +L+ LP +RL V
Sbjct: 346 QEPKPFRYFNKGRLAIIGCYSGV---GLIGKWKVTGFLAWIMWLGVHLVYLPGLRNRLVV 402
Query: 487 GVSWL 491
+ WL
Sbjct: 403 LLCWL 407
>gi|421076594|ref|ZP_15537576.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans JBW45]
gi|392525206|gb|EIW48350.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans JBW45]
Length = 418
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 102/436 (23%), Positives = 179/436 (41%), Gaps = 63/436 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP + I+G GFGG+ TA +L QD K + L+D+ +F+P+LY++ + +
Sbjct: 8 KKPHVVIIGAGFGGIRTA---RALAKQDVK---ITLIDKYNYHLFQPLLYQVATAGLSVD 61
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA P A V F +L SD N ++ G + YD+L+
Sbjct: 62 DIAYPVRAIFREQKNVDF-----RLAEVSDVDFDNKVVSMNTGN---------IAYDYLI 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-RLEEKGIVQAINVET 255
+++G + F TL+++ + + R FE EK + + T
Sbjct: 108 VAVGGMTNYFGMKSMETNGFGMKTLDESVTIRNHIL----RMFELAAHEKDADKRRALLT 163
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES-----GAIPNI 310
+ G P E+A LS +L+ +R + E + E+ +P
Sbjct: 164 FVIVGGGPTGVESA-GALS----ELIYHVMIREYHHLNFKEVRIMLVEASDKLLATMPEE 218
Query: 311 AADKNSDKYI---LELQPAIKGLE----------SQIFEADLVLWTVGSKP--LLPHVEP 355
+ + I +E++ ++ + ++ + V+W G K L+ +
Sbjct: 219 LREVTVETLIRKHVEVRMCVQVTDYDGEKMSLKGGEVIPTNTVVWAAGVKASALMDTL-- 276
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
D+ + +A ++ L + P +F +GD++ RPLP A VA QQAD
Sbjct: 277 ------DVEQASMRRAIVNDFLQLPNRPEVFVIGDAAHYVQGE-RPLPMIAPVAIQQADI 329
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
N+ I + L F ++++G M +GRN A V G I S L +++
Sbjct: 330 TAKNIRNLIRGKELKKFVYKDVGNMATIGRNAAVVHMG---AFKTHGFIAWSIWSLVHIL 386
Query: 476 RLPTDEHRLKVGVSWL 491
RL +R V V W+
Sbjct: 387 RLIDFRNRAVVFVKWM 402
>gi|433679660|ref|ZP_20511368.1| NADH dehydrogenase [Xanthomonas translucens pv. translucens DSM
18974]
gi|430815229|emb|CCP41967.1| NADH dehydrogenase [Xanthomonas translucens pv. translucens DSM
18974]
Length = 435
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 93/392 (23%), Positives = 154/392 (39%), Gaps = 56/392 (14%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P + ++GGGF GL+ L K P ++ L+D+ +F+P+LY++ + + + +
Sbjct: 7 PHLIVVGGGFAGLWATRALA-------KAPLRITLIDRRNHHLFQPLLYQVATAGLSSPD 59
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA +L +D V + + L ++ H L G ++YD+L+++
Sbjct: 60 IAAPLRQILRK------QDNVAVRL-GEVLRLDKQARQVH-----LAGGETLDYDYLLVA 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG--IVQAINVETT 256
GA A A TL+DA L FER E + +A +
Sbjct: 108 TGATHAYFGHDEWARHAPGLKTLDDAL----HLRRHLLLAFERAEAESDPAARAAWLSFA 163
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG----------- 305
I G G A AR RR+ +A V+ E+G
Sbjct: 164 IVGGGPTGVELAGTLAEIARHT------LKHEFRRIDPAQAKVRLIEAGPRVLASFPERL 217
Query: 306 ------AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
+ + D + + ++ + L S A V+W G P R
Sbjct: 218 SAKAQKQLEKLGVDVLTGVPVADIDASGYRLGSTFVPARTVVWAAGV------AASPLGR 271
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
D+PL+ G+ + L + GHP +F GD +AL+ + G+P+P A A Q N
Sbjct: 272 TLDVPLDRSGRVQVQPDLSIPGHPEVFVAGDLAALQQADGKPVPGVAPAAKQMGRHVAEN 331
Query: 420 LWAAINDRPL-LPFRFQNLGEMMILGRNDAAV 450
L + P PFR+ + G + +GR A V
Sbjct: 332 LAKRLRGEPGDAPFRYADYGNLATIGRMAAIV 363
>gi|374990118|ref|YP_004965613.1| oxidoreductase [Streptomyces bingchenggensis BCW-1]
gi|297160770|gb|ADI10482.1| oxidoreductase [Streptomyces bingchenggensis BCW-1]
Length = 399
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 101/381 (26%), Positives = 159/381 (41%), Gaps = 57/381 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K RI +LG G+ G Y A L + D ++ +++ FV + L++L +G+ E
Sbjct: 2 KHRIVVLGAGYAGSYVAGTLARRLSPADT--EITVINAEPDFVQRLRLHQLAAGQ----E 55
Query: 139 I-APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I AP+ AD+ A TG++ RV + P + +A GG E G YD LV
Sbjct: 56 IEAPQLADVFAGTGIELRLARVTAVDPQRQVVA---VAGADGGG---EFG----YDTLVH 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+LG+ VPG AE AF + A R+ +L L RR+ E G V + T
Sbjct: 106 ALGSHGDDCGVPGVAEHAFDVAARPSALRLRERLDSLGRRD-----EGGSVLVVGDGLT- 159
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 317
E A ++ +R G V + R GE A + G + A D+
Sbjct: 160 -------GIETATEIAESRP-----GLSVTLVAR-GELGARLSAGARGHLRQ-ACDRLGI 205
Query: 318 KYI----LELQPAIKGL--ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQA 371
+ +E A + L + + +D+ +WT G P L + G+
Sbjct: 206 TVLEHTEVEAVEAARVLCADGTVLASDVTVWTAG------FAVDPIAAAGGLEVTEDGRI 259
Query: 372 ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI----NDR 427
D + +P ++A+GDS+ +GRPLP ++ A + G AAI R
Sbjct: 260 VVDRIMRSVSYPNVYAVGDSAYAIGDNGRPLP----MSCASAGYTGMQATAAIVGRLTGR 315
Query: 428 PLLPFRFQNLGEMMILGRNDA 448
+ + + LG + LGR D
Sbjct: 316 KIPNTKLEYLGNHISLGRRDG 336
>gi|375140481|ref|YP_005001130.1| NADH dehydrogenase, FAD-containing subunit [Mycobacterium rhodesiae
NBB3]
gi|359821102|gb|AEV73915.1| NADH dehydrogenase, FAD-containing subunit [Mycobacterium rhodesiae
NBB3]
Length = 393
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 100/394 (25%), Positives = 165/394 (41%), Gaps = 54/394 (13%)
Query: 78 KKPRICILGGGFGGLYTA--LRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+K R+ ++GGG+ G+ A LRL V V L++ +FV + L++L++G D
Sbjct: 4 QKTRVIVIGGGYAGVLAANHLRLNENV-------DVTLINPRPKFVERIRLHQLVTGTDD 56
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
A ++++L G+Q D V ++ P ++ L SG + YD+L
Sbjct: 57 A---VVDYSEIL-GAGIQLIVDSVAR--------IDAPRR-----SIELASGGELTYDYL 99
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
+ ++G+ VVPGAAEFA+P S LE A ++L+ +
Sbjct: 100 IYAIGSHGAAPVVPGAAEFAYPISELEHA---------------QQLKAAFQAAGTDAPM 144
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKN 315
T+ G G AA R+V LV G + ++ K+ + I +
Sbjct: 145 TVIGAGPTGLEVAAEFAEEGRRVTLVCGGVLGPYLHARGRRSAAKRLNRLGVTIIDGPGS 204
Query: 316 SDKYILELQPAIKGL-ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD 374
+ E++P L + + + + +WT G +P V + L +A G+ TD
Sbjct: 205 TAT---EVRPDCVILADGRTIASTVTVWTAGFG--VPDVAARSG----LSTDAAGRLLTD 255
Query: 375 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRF 434
ETL PRI A GD+SA S PL + Q A A + + I P
Sbjct: 256 ETLTSVDDPRIVAAGDASA---PSNLPLRMSCQAAIPLGAQAANTVLSRIAGTEPKPLNQ 312
Query: 435 QNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 468
G+ + LGR+ V + ++ + IG A
Sbjct: 313 AFTGQCISLGRDGGLVQLAHLDDTVMPLHIGGRA 346
>gi|392550972|ref|ZP_10298109.1| NADH dehydrogenase [Pseudoalteromonas spongiae UST010723-006]
Length = 439
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 90/372 (24%), Positives = 144/372 (38%), Gaps = 29/372 (7%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
++ + L+D++ ++KP+L+E+ +G +D ++ A G QF L +D
Sbjct: 32 QRANITLIDKNRTHIWKPLLHEVATGSLDTSLDGVSYSAHAATHGFQFILGEFIKLDTND 91
Query: 167 HLGVNGPMACTHGGTVLL-ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
++ G VLL E L YD L++++G+ PG AE + + + A
Sbjct: 92 Q-AISLKQHNDDNGKVLLPERAL--HYDKLIIAIGSISNDFNTPGVAEHCYFLDSQQQAE 148
Query: 226 RVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPG-NREAALKVLSARKVQLVLGY 284
R L R + + Q+ ++ I G G A L +S L
Sbjct: 149 RFQHALLNSFTRVHQNSSGEQSSQSNSLSIAIVGGGATGVELSAELIHVSGLLKHYGLSE 208
Query: 285 FVRCIRRVGEFEAS----------VKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQ 333
F R+ EA + + N+ + I E Q E +
Sbjct: 209 FKSTQLRIHLIEAGPTILPALPKRISDAARRELLNLGIQVLENTRISEANQHGFVTAEGE 268
Query: 334 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 393
ADL+LW G K V + L N Q D L KG ++ LGD+SA
Sbjct: 269 EIAADLMLWAAGVK-----VADFIKSIDGLEFNRSNQVLVDPYLQAKGVEHVYVLGDASA 323
Query: 394 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS-- 451
S G +P AQ A Q A N+ A +N + PF++++ G ++ L R A S
Sbjct: 324 CEQSDGSFVPPRAQAAHQMASNLAVNILAELNGKAKTPFKYKDHGSLVNLSRFSAVGSLM 383
Query: 452 ------PSFVEG 457
F+EG
Sbjct: 384 GNLTNNSMFIEG 395
>gi|300703486|ref|YP_003745088.1| NADH dehydrogenase [Ralstonia solanacearum CFBP2957]
gi|299071149|emb|CBJ42462.1| NADH dehydrogenase [Ralstonia solanacearum CFBP2957]
Length = 441
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 103/411 (25%), Positives = 170/411 (41%), Gaps = 39/411 (9%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL-CPS 165
+ +V+LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKSLDRAA 96
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ V+G + G VL E + YD LVL++G+ VPG AE A A
Sbjct: 97 KTITVSGCVDAD-GTEVLPERA--IAYDMLVLAIGSVTHFFGVPGTAEHAIALDAASQAE 153
Query: 226 RVDRKLSELERRNFERLEEKGIVQA-INVETTICPTGTPG--------NREAALKVLSAR 276
R RKL R + G+ A V+ I G G N L
Sbjct: 154 RFRRKLIAACMR-----AQNGVGDARAQVDIAIVGAGATGVELSAELRNTAHVLAAYGLH 208
Query: 277 KVQLVLGYFVRCI----RRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLE 331
K+ + + I R + V + + + D + + ++E+ A+K
Sbjct: 209 KLDPLRDIRIHLIEGSPRILAALSERVSAETTKLLHKLNVDVITGERVVEVTDSAVKTGS 268
Query: 332 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD- 390
+ ADL +W G + P LPL+ GQ TL V+G I+A GD
Sbjct: 269 GKSIPADLTVWAAGIRA------PAILGELGLPLSRLGQVVVSRTLQVEGDDSIYAFGDC 322
Query: 391 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
+S + +P AQ A QQA + + + +P+ PF F++LG ++ LG A
Sbjct: 323 ASCPWPEASTSVPPRAQAAHQQATYLYKAMRRRLQGKPVEPFGFKDLGSLVSLGHFSAV- 381
Query: 451 SPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLTKSAIDSV 499
G + G IG + + RL T +R+ V + + A+D+V
Sbjct: 382 ------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFVRMALDTV 426
>gi|167629611|ref|YP_001680110.1| pyridine nucleotide-disulfide oxidoreductase [Heliobacterium
modesticaldum Ice1]
gi|167592351|gb|ABZ84099.1| pyridine nucleotide-disulphide oxidoreductase, putative
[Heliobacterium modesticaldum Ice1]
Length = 418
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 170/395 (43%), Gaps = 54/395 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ KKPRI ILG G+ G+ TA RL+ L+ D+ +++LV++ L++ +G V+
Sbjct: 2 ETKKPRIVILGAGYAGILTARRLQKLLRHDE--AEIVLVNKHSYHYLTTWLHKAAAGTVE 59
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
I D++ + ++F KD V + + V+L G + YD+L
Sbjct: 60 DERITIAIKDVIDSRRIRFIKDTVTEVETTTQ-------------RVMLCHGEPLAYDYL 106
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
VL+LG E +PG E A ++ A ++ +L+ +E R E ++KG +
Sbjct: 107 VLALGFERADFGIPGIKEHALAICSMNSARQI--RLT-VEARFAEFAKQKGRDGQEKLTF 163
Query: 256 TICPTGTPGNREAA-----------LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 304
+ G G AA + ++VQ++ + +G F ++ +
Sbjct: 164 VVGGAGFTGIEFAAELAERIPALCRQHGIDRQRVQVINVEGAPAL--LGGFAPALAEYAK 221
Query: 305 GAIPNIAADKNSDKYILELQPAIKGLESQIFEADL----VLWTVGSKPLLPHVEPPNNRL 360
++ N+ I + L ++ E + V+WT G + NR+
Sbjct: 222 ASLENMGVQFRLSTRIQSVDRDGVTLLTEAGEERITPATVIWTGGVQ---------GNRV 272
Query: 361 --HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAG 417
++ RG+ ++ L GH +F LGD SA+ D +GRP P TAQ+A Q+
Sbjct: 273 VCNEDFAAVRGRIAAEKDLRAPGHDNVFVLGDCSAVIDKRTGRPFPPTAQLAILQSAVCA 332
Query: 418 WNLWAAIND----RPLLPFRFQNLGEMMILGRNDA 448
NL + + +PF G + LG +DA
Sbjct: 333 ENLATLVRGGSDLKEFVPF---IKGAVASLGSHDA 364
>gi|261217103|ref|ZP_05931384.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella ceti M13/05/1]
gi|261319974|ref|ZP_05959171.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella ceti M644/93/1]
gi|260922192|gb|EEX88760.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella ceti M13/05/1]
gi|261292664|gb|EEX96160.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella ceti M644/93/1]
Length = 424
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 116/430 (26%), Positives = 179/430 (41%), Gaps = 53/430 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ++G GFGGL L D K ++ L+DQ +F+P+LY++ + + EI
Sbjct: 7 PHIVVVGAGFGGLQLIRDL------DGAKVRITLIDQRNHHLFQPLLYQVATTILSTSEI 60
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A +L F DR ++ + LG + T +V LE+G V YD LVL+
Sbjct: 61 AWPIRNL--------FHDRAEV---TTLLGTVIDVD-TARKSVFLENGDEVSYDMLVLAT 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFERLEEKGIVQAINVETTIC 258
GA + A LEDA + R L ER ER + QA+ + +I
Sbjct: 109 GARHAYFGNDQWEKLAPGLKALEDATTIRRRLLLAFERA--EREPDMARRQAL-LTFSIV 165
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP---NI 310
G G A + AR+ R + +A V E+G A P +
Sbjct: 166 GGGPTGVELAGIIAELARRT------LWPEFRNIDTRQARVLLLEAGPRILSAFPEDLSA 219
Query: 311 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE----PPNNRLHDLPLN 366
A + +K +E++ I I + + TVG + + H L L+
Sbjct: 220 YARRALEKLGVEVRLGIP--VKDITQEGV---TVGDEFIPCHTTVWAAGVAASPAALWLD 274
Query: 367 AR----GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
A G+ + L V GH IFA+GD++ + GRP+P A A QQ + + +
Sbjct: 275 AESDRAGRVKVLSNLSVPGHEDIFAIGDTAWVEGDDGRPVPGIAPAAKQQGAYVAKVIRS 334
Query: 423 AI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
+ N P LPFR+++ G + +G+ A V + L G I +A++ L
Sbjct: 335 RVENKTPPLPFRYKHQGNLATIGKGAAVVDMGRIR---LKGTIAWWFWGIAHIFFLIGTR 391
Query: 482 HRLKVGVSWL 491
R V SWL
Sbjct: 392 SRAAVAWSWL 401
>gi|428223493|ref|YP_007107590.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geitlerinema sp. PCC 7407]
gi|427983394|gb|AFY64538.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geitlerinema sp. PCC 7407]
Length = 459
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 98/408 (24%), Positives = 159/408 (38%), Gaps = 49/408 (12%)
Query: 67 SASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPML 126
+A+QT T K I+GGGFGGLY A L D +V L+D+ +F+P+L
Sbjct: 3 NAAQTET---KAPHHAVIVGGGFGGLYAAKELGK-----DPNVKVTLIDKRNFHLFQPLL 54
Query: 127 YELLSGEVDAWEI-APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE 185
Y++ +G + +I +P A L N Q VK + P+ G TV L
Sbjct: 55 YQVATGGLSPGDISSPLRAVLGRNKNTQVLMAEVKEIDPA-------------GQTVTLP 101
Query: 186 SGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS-ELERRNFERLEE 244
G I YD L+++ G ++ A T+EDA + R++ E E E
Sbjct: 102 DGKI-SYDSLIIATGVSHHYFGNDHWSDDAPGLKTVEDALEMRRRIFLAFEAAEKETDPE 160
Query: 245 KGIVQAINVETTICPTGTP----------GNREAALKVLSARKVQLVLGYFVRCIRRVGE 294
K V PTG + + + + Q++L +
Sbjct: 161 KHKAWLTFVVVGAGPTGVELAGALAELAHTTLKNDFQTIDPTEAQIILLEGTDRVLPPYA 220
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVLWTVGSKPLL 350
E S K ES + N+ + + ++ + G + + + +LW G K
Sbjct: 221 PELSAKAEES--LTNLGVTVRTKTLVTHIEDGVVTVRNGEKIEYLPSQTILWAAGIK--- 275
Query: 351 PHVEPPNNRL---HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 407
P + L+ G+ + L + +P IF +GD S RPLP A
Sbjct: 276 --ASPMGKEIALRTGAELDRVGRVMVEPDLSLPNYPNIFVIGDLSNFSHQGDRPLPGVAP 333
Query: 408 VAFQQADFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSF 454
VA Q+ + + + + PF + + G + ++GRN A V F
Sbjct: 334 VAMQEGRYVANVIKRQVRGNHERSPFEYVDRGSLAVIGRNAAVVDLGF 381
>gi|405968830|gb|EKC33859.1| Putative NADH dehydrogenase [Crassostrea gigas]
Length = 418
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 107/419 (25%), Positives = 177/419 (42%), Gaps = 49/419 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ ++ ILG G+GG Y+ LR D K V+++ F+F PML G V+
Sbjct: 28 RKKLVILGTGWGG-YSLLRN-----IDKKLFDVVVISPRNYFLFTPMLASTTVGTVEFRS 81
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLL-ESGLIVEYDWLVL 197
I + F L + HL + + H +VL + G V +D LV+
Sbjct: 82 IIEPVRNTTFRQTGDFH------LSYATHLDMKNQVL--HCESVLQPQLGYTVNFDKLVI 133
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETT 256
++GA VPG E AF + DA ++ R + +E L E Q +N
Sbjct: 134 AVGARSNTFNVPGVEEHAFFLKDIPDARKIRSRIIRNIELSLHPGLSESERKQLLNF--- 190
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 316
+ G P E ++ + + Y R + + V ES I + + D++
Sbjct: 191 VIVGGGPTGVEFGAELYDWIEQDVARVYHQR------KDQVHVTLVESNQILS-SFDESL 243
Query: 317 DKYILELQP-AIKGLESQIFEADLVLWTVGSKP--LLPHVEPPNNRLHDLPLNARGQAET 373
KY ++ +K + LV+W+ G P + + NR GQ T
Sbjct: 244 RKYAEKVTSDCVKLSNGEDLPCGLVVWSTGLSPTQFVKSLGVDKNR--------NGQILT 295
Query: 374 DETLCVKGHP--RIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 431
D+ L V G P ++ALGD + +RD+ PLP AQVA +Q ++ NL+ +++
Sbjct: 296 DKNLHVIGDPTNNVYALGDCADIRDN---PLPCIAQVAERQGEYLA-NLFCGKDEK---E 348
Query: 432 FRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
F FQ+ G + +GR S + + + G + AYL +L + R++V + W
Sbjct: 349 FTFQSKGMLAYIGRYQGV---SDIPKIKMQGISSWFLWRSAYLTKLGSWRLRMQVPMDW 404
>gi|398784726|ref|ZP_10547906.1| NADH dehydrogenase [Streptomyces auratus AGR0001]
gi|396995032|gb|EJJ06055.1| NADH dehydrogenase [Streptomyces auratus AGR0001]
Length = 459
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 108/454 (23%), Positives = 189/454 (41%), Gaps = 82/454 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKPMLYELLSGEVDAWE 138
RI ++GGG+ G+YTALRL+ + Q+ ++ +V+++D ++P L E +G +
Sbjct: 8 RILVVGGGYVGMYTALRLQRKLKQELQQGTVEVIVIDPDPYMTYQPFLPEAAAGSISPRH 67
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ +L+ V V + SD +A G +E V YD LVL+
Sbjct: 68 VVVPLRRVLSQCKVVI--GEVTAIDHSDRRATITTLAAEETGNGAIE----VVYDELVLA 121
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
G+ + VPG AEF F T+E+A + RN ++ +++ ++
Sbjct: 122 PGSVSRTLPVPGLAEFGIGFKTVEEAIGL---------RNH-------VLGQLDIASS-- 163
Query: 259 PTGTPGNREAALK----------VLSARKVQLVLGYFVRCIRRVGE-------FEASVK- 300
T P R+AAL V + +++ + Y VR + EA+ +
Sbjct: 164 -TRDPAVRDAALTFVFVGGGYAGVEALAELEDMARYAVRYYHNIKPEDMKWILVEATGRI 222
Query: 301 ----QPESG--AIPNIAADKNSDKYILELQPAIKGLESQI--------FEADLVLWTVGS 346
PE G A+ + A +N D + L+ ++ E ++ F ++WT G
Sbjct: 223 LPEVGPEMGRYAVRELRA-RNID---VRLETRLESCEKRVAVLSDGSRFPTRTLVWTAGV 278
Query: 347 KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA-- 404
KP P LPL A G+ + L V G ++ GD++A+ D + P
Sbjct: 279 KP------HPILAATKLPLAAHGRLQCTPALQVDGVEHAWSAGDAAAVPDLTAEPPADPD 332
Query: 405 --------TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 456
AQ A +QA N+ +A+ P++ +R + G + LG + + +
Sbjct: 333 APRPMCAPNAQHALRQAKVLAENIASAVRGGPIVDYRHKYAGSVASLGLHKGV---AHIY 389
Query: 457 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
G L G + +L R+PT + +V W
Sbjct: 390 GRKLKGYPAWFMHRAYHLSRVPTFNRKARVLAEW 423
>gi|340792211|ref|YP_004757675.1| NADH dehydrogenase [Brucella pinnipedialis B2/94]
gi|340560670|gb|AEK55907.1| NADH dehydrogenase [Brucella pinnipedialis B2/94]
Length = 441
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/430 (26%), Positives = 181/430 (42%), Gaps = 53/430 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ++G GFGGL L D K ++ L+DQ +F+P+LY++ + + EI
Sbjct: 24 PHIVVVGAGFGGLQLIRDL------DGAKVRITLIDQRNHHLFQPLLYQVATTILSTSEI 77
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A +L F+DR ++ + LG + T +V LE+G V YD LVL+
Sbjct: 78 AWPIRNL--------FRDRAEV---TTLLGTVIDVD-TARKSVFLENGDEVSYDMLVLAT 125
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFERLEEKGIVQAINVETTIC 258
GA + A LEDA + R L ER ER + QA+ + +I
Sbjct: 126 GARHAYFGNDQWEKLAPGLKALEDATTIRRRLLLAFERA--EREPDMARRQAL-LTFSIV 182
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP---NI 310
G G A + AR+ R + +A V E+G A P +
Sbjct: 183 GGGPTGVELAGIIAELARRT------LWPEFRNIDTRQARVLLLEAGPRILSAFPEDLSA 236
Query: 311 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE----PPNNRLHDLPLN 366
A + +K +E++ G+ + + V TVG + + H L L+
Sbjct: 237 YARRALEKLGVEVR---LGIPVKDITQEGV--TVGDEFIPCHTTVWAAGVAASPAALWLD 291
Query: 367 AR----GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
A G+ + L V GH IFA+GD++ + GRP+P A A QQ + + +
Sbjct: 292 AESDRAGRVKVLSNLSVPGHEDIFAIGDTAWVEGDDGRPVPGIAPAAKQQGAYVAKVIRS 351
Query: 423 AI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
+ N P LPFR+++ G + +G+ A V + L G I +A++ L
Sbjct: 352 RVENKTPPLPFRYKHQGNLATIGKGAAVVDMGRIR---LKGTIAWWFWGIAHIFFLIGTR 408
Query: 482 HRLKVGVSWL 491
R + SWL
Sbjct: 409 SRAAMAWSWL 418
>gi|145594656|ref|YP_001158953.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Salinispora tropica CNB-440]
gi|145303993|gb|ABP54575.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Salinispora tropica CNB-440]
Length = 433
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/432 (24%), Positives = 185/432 (42%), Gaps = 44/432 (10%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPR+ I+G GF G + A L L + +++L++ ++ F++ P+L E+ +G V+
Sbjct: 3 KPRVVIVGAGFAGYHAAKTLGRLA---RDQAEIVLLNTTDYFLYLPLLPEVAAGVVEPTR 59
Query: 139 IAPRFADLLANTGVQFFKDRVKLLC-PSDHLGV-NGPMACTHGGTVLLESGLIVEYDWLV 196
++ A L D V+L+ +DH+ + N ++ T E I YD LV
Sbjct: 60 LSVPLAGTL---------DGVRLVVGEADHVDLRNRWVSFTQPEG---ERNRIA-YDRLV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDAC----RVDRKLSELERRNFERLEEKGIVQAIN 252
L++G+ KL +PG E+A F L +A V R++ EL + + E++ +
Sbjct: 107 LAVGSVNKLLPIPGVTEYAHGFRGLPEALYLHDHVVRQI-ELAEQATDPAEQRARATFVV 165
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLG----YFVRCIRRVGEFEASVKQPESGAIP 308
V T + + L ++ +L L R + E + + +
Sbjct: 166 VGAGYTGTEVAAHGQLFTDRLVGQRSRLKLRPRWMLLDVAPRVLPELDRRMSDTAHRVLE 225
Query: 309 NIAAD-KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA 367
D + + +K + + + W VG +P + + L L
Sbjct: 226 ERGIDVRMGTSVAVATADGVKLTDGEFIPTCSLFWCVGVRP--------DPLVAQLGLRT 277
Query: 368 -RGQAETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNLWAAI 424
+G+ TDE L V G P +FA GD++A+ D G+ TAQ A +Q N+ A+
Sbjct: 278 EKGRLVTDEYLNVPGFPEVFACGDAAAVPDLTQPGQVCAMTAQHAQRQGKLVAHNIAASY 337
Query: 425 NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 484
P++ LG ++ LG DAA +P V L G + +L+ LP + R
Sbjct: 338 GQGTRKPYKHHELGWVVDLGGLDAAANPL---KVPLAGLPAKVVTRGYHLLNLPGN--RA 392
Query: 485 KVGVSWLTKSAI 496
+VG WL + +
Sbjct: 393 RVGADWLLDATL 404
>gi|115359836|ref|YP_776974.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia ambifaria AMMD]
gi|115285124|gb|ABI90640.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia ambifaria AMMD]
Length = 452
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 162/388 (41%), Gaps = 28/388 (7%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL A RL + + + V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLQLATRLGDTLGRRGQA-DVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + + + + + G +L + L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALHRVDRAARTATIAAVQDADGTEILPQRAL--GYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
++G+ VPGAA A P L+ A RK + E++ A + +
Sbjct: 132 AVGSVTNFFNVPGAARHALPLENLDQAEDFRRKFLAACTKANHVAEQQPARPAAPICINV 191
Query: 258 CPTGTPGN------REAALKVLSARKVQLVLG--YFVRCI----RRVGEFEASVKQPESG 305
G G R A ++ + R LV +R I R + +A +
Sbjct: 192 IGAGATGVELAAALRHAIQQLTTYRFKALVSARDVHIRLIEGGPRILPALDARLSARMHA 251
Query: 306 AIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHD 362
+ + D +D + E+ A+ + +D+ +W G V P L D
Sbjct: 252 QLRTLNVDVLTDTRVAEVGADAVTTATGERLASDITIWAAG-------VAGPAILRELGD 304
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSAL--RDSSGRPLPATAQVAFQQADFAGWNL 420
+ LN Q +TL P ++A GD +A D+SG LP AQVA QQA + G L
Sbjct: 305 IALNRSNQVIVTDTLQTPDDPHVYAFGDCAACPSADASGF-LPPRAQVAHQQAVYLGEAL 363
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ +P+ F F++ G ++ LG+ A
Sbjct: 364 ARRLAGKPVAGFTFRDAGTVVSLGQAGA 391
>gi|406886462|gb|EKD33487.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[uncultured bacterium]
Length = 417
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 151/362 (41%), Gaps = 37/362 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++ I ILGGGF G+ TAL L SL + + +VD+ +F P+LYE+ +G +
Sbjct: 2 EQKNIVILGGGFAGIRTALDLGSLCHKRGMNCDIAVVDKMREHLFTPLLYEIATGLL--- 58
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHG-----GTVLLESGLIVEY 192
E AD G D + L + GV A G V SG + +
Sbjct: 59 EERGHSADSALQKGACLSFD--ECLVKAKKAGVRFVHAEVTGVDASSRIVKCASGDSMPF 116
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL---ERRNFERLEEKGIVQ 249
D LV++LG+E + G A+ A +L A + R++SE R F + G
Sbjct: 117 DHLVIALGSEVNDYGIAGIAKNAVMMKSLAGAEYIRRRISEFVTGSDREFNII--IGGAG 174
Query: 250 AINVETTICPTGTPGNREAALK-VLSARKVQLV------LGYFVRCIRRVGEFEASVKQP 302
A VET+ +R K L+A + LV L F +R++
Sbjct: 175 ATGVETSAELANFFQSRVYKTKPALAAPHITLVEAQDDILSSFKPSLRKIARERLHQLGI 234
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
E NI + I + L QI DL++W G K P +
Sbjct: 235 EILVNTNIVEAREGSVVIKSVGAL---LNKQI---DLLIWAGGIKA------PDFLKNFG 282
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
+ L +G + DE L V G I+ALGD +++R+ RP PA AQ A QA N+ +
Sbjct: 283 VALTEKGFIDVDENLRVIGSENIWALGDCASVRN---RPAPALAQAAVSQAGAVAKNIAS 339
Query: 423 AI 424
A+
Sbjct: 340 AL 341
>gi|392947599|ref|ZP_10313233.1| NADH dehydrogenase [Lactobacillus pentosus KCA1]
gi|334881082|emb|CCB81897.1| NADH dehydrogenase [Lactobacillus pentosus MP-10]
gi|339637802|emb|CCC16778.1| NADH dehydrogenase [Lactobacillus pentosus IG1]
gi|392437168|gb|EIW15058.1| NADH dehydrogenase [Lactobacillus pentosus KCA1]
Length = 400
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 97/416 (23%), Positives = 160/416 (38%), Gaps = 115/416 (27%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ +LGGG+ G+ L+ + +D +++LVDQ+ K L+E+ +G + I
Sbjct: 3 KTLVLGGGYAGMRAVKFLQKSLPTED---EIVLVDQTPTHTEKTNLHEVAAGTIAPDRIT 59
Query: 141 PRFADLLANTGVQFFKDRV-------KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ +++ VQF + V K + DH + YD
Sbjct: 60 YQIPEIIGKR-VQFVQATVNNVDIETKQVSFDDHADMT--------------------YD 98
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLE-------------DACRVDRKLSELE----- 235
+LVL+LG + + V GA E A P L A R + ++L+
Sbjct: 99 YLVLALGFQSETFGVEGADENALPMDDLATSQAVYEHIEERFKAYRTSKDKNDLKIAVCG 158
Query: 236 ------------RRNFERLEEKGIVQAINVET-----TICPTGTPGNREAALKVLSARKV 278
++ +L+ K A V +I P T R+ ALK + V
Sbjct: 159 AGFTGIELLGELTQSLPKLQAKYQTPAAKVVCLERMPSILPMFTQELRDYALKFMEKNNV 218
Query: 279 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 338
++ LG + I+ GA+ ADKN + F A+
Sbjct: 219 EMRLGSVIEAIK-------------PGAVVYSDADKNEHE----------------FTAN 249
Query: 339 LVLWTVGSKPLLPHV------EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 392
++WTVG HV E NR+ P L ++GHP +F +GD +
Sbjct: 250 TIIWTVGVSG--SHVIADSGFEQRRNRVVVKP-----------DLSLEGHPEVFIVGDVA 296
Query: 393 ALRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 447
A+ D S RP P TAQ+A + A N+ A +++ F +++ G + L D
Sbjct: 297 AVMDPESNRPYPTTAQIALAAGEQAAKNIGALRHNQATTTFNYESSGTVASLSDRD 352
>gi|187921420|ref|YP_001890452.1| NADH dehydrogenase [Burkholderia phytofirmans PsJN]
gi|187719858|gb|ACD21081.1| NADH dehydrogenase [Burkholderia phytofirmans PsJN]
Length = 449
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 156/364 (42%), Gaps = 32/364 (8%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV LVD++ ++KP+L+E+ +G +D + +A G +F + + L ++
Sbjct: 34 QAQVTLVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGDLTGLDRANK 93
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
G + G +L E L EYD L++++G+ V GA EF+ T+ A R
Sbjct: 94 RLTLGTVLDDDGAELLPERQL--EYDTLIIAIGSTTAFFGVKGAPEFSLALDTVSQAERF 151
Query: 228 DRKL----SELERRNFERLEEKGIVQAIN---VETTICPTGTPGNREAA-----LKVLSA 275
++L E + E +E V A ++ I G G +A +VLSA
Sbjct: 152 RKRLIAACMRAEHQVHEPVEAAPAVGAPGEPRIQVAIVGGGATGVELSAELRNTAQVLSA 211
Query: 276 ---------RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA 326
V +VL R + + V + + + + + E+ P
Sbjct: 212 YGLHKLDPRHDVGIVL--IEAGPRILPALQERVSTATAELLTKLGVKLMIGETVAEVAPG 269
Query: 327 -IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 385
I+ + ADL +W G K P + + L LP+N GQ TL + +
Sbjct: 270 MIRTASGKTVRADLTVWAAGIKA--PAIL---SELDGLPVNRLGQLIVRRTLQTETDDNV 324
Query: 386 FALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
FALGD +A + R +P AQ A QQA F L A + ++PL F +++ G ++ LG
Sbjct: 325 FALGDCAACPWPGNERNVPPRAQAAHQQASFLMKALAARLENKPLPEFTYRDFGSLVSLG 384
Query: 445 RNDA 448
A
Sbjct: 385 HFSA 388
>gi|395771633|ref|ZP_10452148.1| transmembrane NADH dehydrogenase [Streptomyces acidiscabies 84-104]
Length = 450
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 109/432 (25%), Positives = 189/432 (43%), Gaps = 46/432 (10%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI I+G GF G A +L + ++ +++ ++ F++ P+L ++ +G ++
Sbjct: 3 RPRILIVGAGFAGYRAARQLAR---AARGRAEITVLNPTDHFLYLPLLPQVATGVLEPRR 59
Query: 139 IAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVN--GPMACTHGGTVLLESGLIVEYDWL 195
+A L + + + DRV L DH V+ GP GGT L YD L
Sbjct: 60 VAVSLPGTLRDVRIVLGEADRVDL----DHRAVHYRGP----EGGTGSLP------YDRL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
VL++G+ KL VPG E+A F L +A + ++ + E+ + V
Sbjct: 106 VLAVGSVNKLLPVPGVTEYAHGFRGLPEALYLRDHITR--QMELAATEDDPAARCTFVVV 163
Query: 256 TICPTGTPGNREA-----ALKVLSARKVQLVLGYFV--RCIRRVGEFEASVKQPESGAIP 308
TGT + AL+ R L + + R + E + + + + +
Sbjct: 164 GAGYTGTEVAAQGRLFTDALQRTRPRHEALTTRWLLLDTAPRILPELDERLSRTATRVLG 223
Query: 309 NIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA 367
+ + + E + + + + ++W VG +P +P L LPL
Sbjct: 224 ERGVEVRTGTSVKEARKDGVLLTDGESVPTRTLVWCVGVRP-----DPLAESL-GLPLE- 276
Query: 368 RGQAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPATAQVAFQQADFAGWNLWAAIN 425
RG+ + TL V G P +FA GD +A+ D+ G TAQ A++Q N+ A++
Sbjct: 277 RGRILVEPTLQVPGRPEVFACGDVAAVPDTDRPGEFTAMTAQHAWRQGKLVAENVAASLT 336
Query: 426 DRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG-PIGHSARKLAYLIRLPTDEHRL 484
R P+ ++LG ++ LG +AA P G+ L G P G R +L LP + R+
Sbjct: 337 GRAQRPYHHKDLGFVVDLGGGEAAADPL---GLPLSGLPAGLVTRGY-HLAALPGN--RV 390
Query: 485 KVGVSWLTKSAI 496
+V WL + +
Sbjct: 391 RVAADWLLDAVL 402
>gi|408821867|ref|ZP_11206757.1| pyridine nucleotide-disulfide oxidoreductase [Pseudomonas
geniculata N1]
Length = 426
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/394 (22%), Positives = 164/394 (41%), Gaps = 54/394 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + ++GGGF GL+ L ++ ++ LVD+ +F+P+LY++ + + A
Sbjct: 4 ERVPHLVVVGGGFAGLWATRALAR------ERIRITLVDRRNHHLFQPLLYQVATAGLSA 57
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA +L + + + R+ + D + + G ++YD L+
Sbjct: 58 PDIAAPLRHILGHQ--RNVEVRLGEVVAID----------KQARQIRMADGSTLDYDSLL 105
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG--IVQAINVE 254
L+ GA A+ A TL+DA + RKL FER E + +A +
Sbjct: 106 LATGATHAYFGNDQWADDAPGLKTLDDAIALRRKLL----LAFERAEAEPDPAKKAAWLS 161
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--------A 306
+ G G A AR R + A V+ E+G
Sbjct: 162 FAVVGGGPTGVELAGTLAEIARHT------LRNEFRHIDPASAKVRLVEAGPRVLSSFPE 215
Query: 307 IPNIAADKNSDKYILELQPA--IKGLESQIFE-------ADLVLWTVGSKPLLPHVEPPN 357
+ ++ A + +K +E+ + ++SQ F A V+W G P
Sbjct: 216 VLSLKARRQLEKLGVEVLTGTPVSDIDSQGFTLGDEFVPARTVVWAAGV------AASPL 269
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
R ++PL+ G+ + L + GHP +F GD + L ++G+P+P A A Q +
Sbjct: 270 ARTLEVPLDRAGRVQVQPDLTLSGHPELFVAGDLAVLNQANGKPVPGVAPAAKQMGKYVA 329
Query: 418 WNLWAAINDRPLL-PFRFQNLGEMMILGRNDAAV 450
+ A ++ +P PF++ + G + +GR A V
Sbjct: 330 EVIRARLHGKPEPGPFKYADFGNLATIGRMAAIV 363
>gi|187929513|ref|YP_001900000.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Ralstonia pickettii 12J]
gi|309781711|ref|ZP_07676444.1| NADH dehydrogenase [Ralstonia sp. 5_7_47FAA]
gi|404396628|ref|ZP_10988422.1| hypothetical protein HMPREF0989_04585 [Ralstonia sp. 5_2_56FAA]
gi|187726403|gb|ACD27568.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Ralstonia pickettii 12J]
gi|308919352|gb|EFP65016.1| NADH dehydrogenase [Ralstonia sp. 5_7_47FAA]
gi|348610575|gb|EGY60263.1| hypothetical protein HMPREF0989_04585 [Ralstonia sp. 5_2_56FAA]
Length = 444
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/408 (25%), Positives = 169/408 (41%), Gaps = 39/408 (9%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL-CPSDHL 168
Q++LVD++ ++KP+L+E+ +G +D +A G +F + +K L + +
Sbjct: 43 QIILVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKGLDRVAKSI 102
Query: 169 GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD 228
V+G + G VL E + YD LVLS+G+ VPG AE A T A R
Sbjct: 103 MVSGCVDAD-GTEVLPERA--ISYDTLVLSIGSVTHFFGVPGTAEHAIALDTAWQAERFR 159
Query: 229 RKLSELERRNFERLEEKGIVQAI-NVETTICPTGTPG--------NREAALKVLSARKVQ 279
R+L R + G+ A V+ I G G N L K+
Sbjct: 160 RRLIAACMR-----AQNGVGDARPQVDIAIVGAGATGVELSAELRNTAHVLAAYGLHKLD 214
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGA----IPNIAADKNSDKYILELQP-AIKGLESQI 334
+ I +K+ S A + + D + + + E+ A+ +
Sbjct: 215 PRHDIRIHLIEGGPRILPVLKERISAATTELLRKLDVDVITSERVTEVTASAVNTASGKF 274
Query: 335 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSA 393
ADL +W G + P LP+N GQ TL V+G I+A GD +S
Sbjct: 275 IPADLTVWAAGIR------APSVLGELGLPVNKLGQVIVSRTLQVEGDDSIYAFGDCASC 328
Query: 394 LRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 453
+ +P AQ A QQA + L ++ RP+ PF F++LG ++ LG A
Sbjct: 329 PWPEASSSVPPRAQAAHQQATYLFDALRKRMDGRPVQPFAFKDLGSLVSLGHFSAV---- 384
Query: 454 FVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLTKSAIDSV 499
G + G IG S + RL T +R+ V + + ++D+V
Sbjct: 385 ---GSLMGGLIGGSMFIEGLMARLMYTSLYRMHVLALHGWVRMSVDTV 429
>gi|440731632|ref|ZP_20911628.1| NADH dehydrogenase [Xanthomonas translucens DAR61454]
gi|440371512|gb|ELQ08353.1| NADH dehydrogenase [Xanthomonas translucens DAR61454]
Length = 430
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 154/392 (39%), Gaps = 56/392 (14%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWE 138
P + ++GGGF GL+ L K P ++ ++D+ +F+P+LY++ + + + +
Sbjct: 2 PHLIVVGGGFAGLWATRALA-------KAPLRITVIDRRNHHLFQPLLYQVATAGLSSPD 54
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA +L +D V + + L ++ H L G ++YD+L+++
Sbjct: 55 IAAPLRQILRK------QDNVAVRL-GEVLRLDKQARQVH-----LAGGETLDYDYLLVA 102
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG--IVQAINVETT 256
GA A A TL+DA L FER E + +A +
Sbjct: 103 TGATHAYFGHDEWARHAPGLKTLDDAL----HLRRHLLLAFERAEAESDPAARAAWLSFA 158
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG----------- 305
I G G A AR RR+ +A V+ E+G
Sbjct: 159 IVGGGLTGVELAGTLAEIARHT------LKHEFRRIDPAQAKVRLIEAGPRVLASFPERL 212
Query: 306 ------AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
+ + D + + ++ + L S A V+W G P R
Sbjct: 213 SAKAQKQLEKLGVDVLTGVPVADIDASGYRLGSTFVPARTVVWAAGV------AASPLGR 266
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
D+PL+ G+ + L + GHP +F GD +AL+ + G+P+P A A Q N
Sbjct: 267 TLDVPLDRSGRVQVQPDLSIPGHPEVFVAGDLAALQQADGKPVPGVAPAAKQMGRHVAGN 326
Query: 420 LWAAINDRPL-LPFRFQNLGEMMILGRNDAAV 450
L + P PFR+ + G + +GR A V
Sbjct: 327 LAKRLRGEPGDAPFRYADYGNLATIGRMAAIV 358
>gi|39995601|ref|NP_951552.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase family
protein [Geobacter sulfurreducens PCA]
gi|409911058|ref|YP_006889523.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase family
protein [Geobacter sulfurreducens KN400]
gi|39982364|gb|AAR33825.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase family
protein [Geobacter sulfurreducens PCA]
gi|298504621|gb|ADI83344.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase family
protein [Geobacter sulfurreducens KN400]
Length = 419
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 104/426 (24%), Positives = 173/426 (40%), Gaps = 49/426 (11%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGG+ A L K V+LVD++ +F+P+LY++ + ++ IA
Sbjct: 3 RVVIIGMGFGGIRAARTLAQ------KGLDVVLVDRNNYHLFQPLLYQVATAGLEQESIA 56
Query: 141 -PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P A TG +F L + T GT+ YD+LV+
Sbjct: 57 YPVRAMARGWTGTRF------QLAEVTGVDFEARQVVTDNGTI--------PYDYLVIGA 102
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETTIC 258
G+ + + AF L DA R+ + L+ ER E K + T +
Sbjct: 103 GSVTNYFGLKSVEQHAFDLKELVDAERLRNHILTAFERAVVEPDPAK----RRALMTFVI 158
Query: 259 PTGTPGNREAALKVLSARKVQLVLGY------FVRCI------RRVGEFEASVKQPESGA 306
G P E A ++ + L Y R + R + A ++
Sbjct: 159 VGGGPTGVEFAGALIELVRYVLTKDYPELSVQAARVVLVEAFDRLLAAMPAELQGYTLEK 218
Query: 307 IPNIAADKNSDKYILELQPAIKGL-ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
+ + + + +++ P L + + A + W+ G K P +
Sbjct: 219 LRGMGVEVLLNARVVDAGPERVTLHDGAVIPAHTLFWSAGVK------AAPLAATLGVEQ 272
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425
N G+ + L + GHP ++ +GD + L + G PLP A VA Q AG ++ A
Sbjct: 273 NPGGRIAVEPDLTLPGHPDVYVVGDMAWL-EQDGAPLPMVAPVAMQMGIHAGKSILAREQ 331
Query: 426 DRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLK 485
P PFR+ + G M +GR+ AAV+ +F G+ L G A L +L L +R+
Sbjct: 332 GAPAPPFRYHDKGSMATIGRS-AAVASAF--GMNLRGYAAWIAWLLLHLYYLIGFRNRIV 388
Query: 486 VGVSWL 491
V ++W+
Sbjct: 389 VMLNWI 394
>gi|375100441|ref|ZP_09746704.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
cyanea NA-134]
gi|374661173|gb|EHR61051.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
cyanea NA-134]
Length = 452
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/432 (24%), Positives = 188/432 (43%), Gaps = 47/432 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI ++GGGF G+ RLE L+ D+ + LV ++ P+L ++ +G +
Sbjct: 2 EPPRILVVGGGFAGVECVRRLERLLTPDEAS--ITLVAARNYQLYLPLLPQVAAGMLTPQ 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN-GPMACTHGGTVLLESGLIVE-YDWL 195
+A LL T V P LGV+ C G L + VE Y++L
Sbjct: 60 SVAVSLRRLLRRTRV----------APGAALGVDLDAKVCVVRG---LSGRIRVEPYEYL 106
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNF--ERLEEKGIVQAIN 252
VL+ G+ + +PG AE A TL +A + D +++L+ ER E++ +Q +
Sbjct: 107 VLAPGSVTRTFDIPGLAEHARGMKTLAEAAYLRDHVIAQLDIAAAAPERDEQEARLQFVV 166
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR---------RVGEFEASVKQPE 303
V T T AAL L++ G I+ + E + +
Sbjct: 167 VGGGYSGTET----AAALHRLTSAAAGRYPGLDPHAIKWHLVDIAPKLMPELGDDLGEKA 222
Query: 304 SGAIPNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + D + + E ++ + ++ ++WT G +P P ++
Sbjct: 223 TDLLRQRGIDVSLGVSVAEADAETVRLTDGRVLPCHTLIWTAGVRPS-PLIDTLGAE--- 278
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS---GRPLPATAQVAFQQADFAGWN 419
RG+ + E + V P +FA+GD++A+ D S G P TAQ A +Q N
Sbjct: 279 ---TVRGRLKVTENMDVPERPGVFAVGDAAAVPDISKGDGAVCPPTAQHAQRQGRAVARN 335
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ A + +P+ P++ +++G ++ LG DA +P GV L G + + +++ L T
Sbjct: 336 VAATLRGQPMEPYQHRDMGLVVDLGGTDAVANPL---GVPLTGLPAQAVTRGYHMVALHT 392
Query: 480 DEHRLKVGVSWL 491
R +V +W+
Sbjct: 393 SVARARVLTNWV 404
>gi|302539977|ref|ZP_07292319.1| NADH dehydrogenase [Streptomyces hygroscopicus ATCC 53653]
gi|302457595|gb|EFL20688.1| NADH dehydrogenase [Streptomyces himastatinicus ATCC 53653]
Length = 470
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 114/460 (24%), Positives = 185/460 (40%), Gaps = 102/460 (22%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G GF G Y A R S + + +++L++ ++ F++ P+L E+ +G ++ ++
Sbjct: 37 RIVIVGAGFAG-YQAARTLSRSLR--RSAEIVLINPNDYFLYLPLLPEVAAGVLEPRRVS 93
Query: 141 -------PRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192
P +L N V RV P G G Y
Sbjct: 94 VSLTGTLPHVRLVLGNVDSVDLTGRRVTWTDPEGGRGEMG-------------------Y 134
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAI 251
D LVL++G+ KL +PG AE A F + +A + D ++E R + +A
Sbjct: 135 DRLVLAVGSVNKLLPIPGVAEHAHGFRGMPEALFLRDHVTRQIEMAANTRDPRE---RAA 191
Query: 252 NVETTICPTGTPGNREAALKVLSA----------------RKVQLVLGYFV--------- 286
+ G G AA VLS R V + + V
Sbjct: 192 RRTFVVVGAGYTGTEVAAHGVLSTDALARQNTALRREPRPRWVLIDVAKRVLPGLDERLS 251
Query: 287 ----RCIRRVG---EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 339
R +RR G SVK+ SD +L+ + + +
Sbjct: 252 RTADRVLRRRGVDVRLGTSVKE------------ATSDGILLD--------DGEFIDTRS 291
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPL-NARGQAETDETLCVKGHPRIFALGDSSALRDSS 398
++W VG +P P VE DL L G+ D+ L V GHP + A GD++A+ D +
Sbjct: 292 LIWCVGVRPD-PLVE-------DLGLATEHGRLRVDQYLAVPGHPEVLACGDAAAVPDLT 343
Query: 399 --GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 456
G TAQ A +Q A N+ A++ P++ +LG + LG AA P +
Sbjct: 344 RPGEFTAMTAQHAQRQGKAAARNILASLGRGAPRPYKHHDLGFTVDLGGVKAAADPLHIP 403
Query: 457 GVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 496
L GP ++ + +L+ +P + R++V WL +A+
Sbjct: 404 ---LAGPAANAVTRGYHLMAMPGN--RVRVATDWLLDAAL 438
>gi|290956256|ref|YP_003487438.1| transmembrane NADH dehydrogenase [Streptomyces scabiei 87.22]
gi|260645782|emb|CBG68873.1| putative transmembrane NADH dehydrogenase [Streptomyces scabiei
87.22]
Length = 458
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 104/427 (24%), Positives = 182/427 (42%), Gaps = 37/427 (8%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G GF G TA L L K + L++ ++ F++ P+L ++ +G ++ +
Sbjct: 5 RILIVGAGFAGYRTARTLARLT---RNKADITLLNPTDYFLYLPLLPQVAAGVLEPRRVT 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L + + + + + + P GGT L YD LVL+ G
Sbjct: 62 VSLTGTLRHVRL-VLGEAGDIDLDARTVRYTDP----EGGTGTLT------YDRLVLAAG 110
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETTICP 259
+ KL +PG AE A F L +A + D ++E E + V
Sbjct: 111 SVNKLLPIPGVAEHAHGFRGLPEALYLRDHVTRQVELAAGSEDPESCRARCTFVVVGAGY 170
Query: 260 TGTPGNREAALKVLSARKVQLVLG------YFVRCIRRV-GEFEASVKQPESGAIPNIAA 312
TGT + + + + Q + G V +RV E + + + +
Sbjct: 171 TGTEVAAQGQMFTDALARQQPLRGGVRPRWVLVDIAKRVLPEMDEKLSRTADEVLRQRGV 230
Query: 313 DKNSDKYILE-LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQA 371
D ++ + E + + + + + ++W VG +P +P L LP+ RG+
Sbjct: 231 DVRTETSVKEATEDGVLLSDGEFVDTRTLVWCVGVRP-----DPLAESL-GLPME-RGRL 283
Query: 372 ETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
+ TL V G P +FA GD++A+ D G+ P TAQ A++Q A N+ A++
Sbjct: 284 LVEPTLQVPGRPEVFACGDAAAVPDLTKPGQYTPMTAQHAWRQGRVAALNVAASLGRGEP 343
Query: 430 LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVS 489
P+R +LG ++ LG AA +P GV L G + + +L +P + R++V
Sbjct: 344 RPYRHSDLGFVVDLGGVKAAANPL---GVPLSGVAAGAVTRGYHLAAMPGN--RVRVAAD 398
Query: 490 WLTKSAI 496
WL + +
Sbjct: 399 WLLDAVL 405
>gi|317495421|ref|ZP_07953790.1| pyridine nucleotide-disulfide oxidoreductase [Gemella morbillorum
M424]
gi|316914480|gb|EFV35957.1| pyridine nucleotide-disulfide oxidoreductase [Gemella morbillorum
M424]
Length = 396
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/410 (24%), Positives = 165/410 (40%), Gaps = 103/410 (25%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ GL T L+ + K V LV+++ L+E+ +G + + +I
Sbjct: 4 VVILGAGYAGLTTLKGLKKAAKAGEVK--VTLVNKNSYHYDTVNLHEVSAGNIPSRDICI 61
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ GV F +D V + L +L ++YD LV+ LG
Sbjct: 62 DIKDVV-TPGVSFVQDEVIKIDTEKKL--------------VLTKKHEIDYDVLVIGLGF 106
Query: 202 EPKLDVVPGAAEFAFPF----------STLEDACR-------VDRK-------------- 230
+P+ + G AE A P +TLED R D K
Sbjct: 107 QPETFGIEGMAENAMPIADVLAAEKIAATLEDNFRKYATSEEKDVKDISVIVGGTGLAGM 166
Query: 231 --LSELERRNFERLEEKGI------VQAINVETTICPTGTPGNREAALKVLSARKVQLVL 282
L EL R E + GI + ++ T+ P T + A K L ++++L
Sbjct: 167 EFLGELVHRKKELCSKYGIDEKLVKIYGLDAAPTLLPMFTKEYSDYARKYLEDNGIEIIL 226
Query: 283 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 342
G ++ GA +D +I+E++ E + +A ++W
Sbjct: 227 GAGIK-----------------GA--------TADSFIIEVEG-----ERKELKASTLVW 256
Query: 343 TVGSKPLLPHVEPPNNRLHD--LP-LNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 399
T G + N+L D P L+ RG+ T + L V G I+ +GD +A ++
Sbjct: 257 TAGVR---------GNKLMDETFPELSKRGRLVTTQQLTVPGMEDIYIVGDCAAFIETGQ 307
Query: 400 -RPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
RP P TAQ+A Q + G A I+ +P+ F++ N G + LG D
Sbjct: 308 ERPYPTTAQIANQMGAYVG----ARISGKPVGDFKYINRGVVCSLGHKDG 353
>gi|224076814|ref|XP_002305005.1| predicted protein [Populus trichocarpa]
gi|222847969|gb|EEE85516.1| predicted protein [Populus trichocarpa]
Length = 451
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 117/458 (25%), Positives = 185/458 (40%), Gaps = 73/458 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KPR+ +LG G+ L++ ++ V+ + VF P+L G ++
Sbjct: 12 EKPRVVVLGTGWAACRFMKGLDTRIYD------VVCISPRNHMVFTPLLASTCVGTLEFR 65
Query: 138 EIAP---RFADLLANTGVQFF---------KDRVKLLCPSDHLGVNGPMACTHGGTVLLE 185
+A R LA + +F D+ ++ C + ++GG
Sbjct: 66 SVAEPVNRIQSALATSPNSYFYMASCFGIDTDKHEVYCET----------VSNGGLPHDP 115
Query: 186 SGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK 245
V YD LV++ GAEP + G E AF + A + +KL N E
Sbjct: 116 YQFKVAYDKLVIAAGAEPLTFGIKGVKEHAFFLREVNHAQEIRKKL----LLNLMLSENP 171
Query: 246 GIVQAINVETTIC------PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS- 298
GI + C PTG + E L R VQ + V+ +V EAS
Sbjct: 172 GISEEEKKHLLHCVVIGGGPTGVEFSGE--LSDFIKRDVQDRYTH-VKDYVKVTLIEASE 228
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLE-SQIFEAD-------LVLWTVGSKPLL 350
+ + A + + + ++ +K + +I +D L++W+ G P
Sbjct: 229 ILSSFDVGLRQYATNHLTKSGVSLMRGVVKEVHPKKIVLSDETNVPYGLLVWSTGVGP-- 286
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP-LPATAQVA 409
+ DLP G+ DE L V +FALGD + ++SGRP LPA AQVA
Sbjct: 287 ----SQFVKSLDLPKAPGGRIGIDEWLRVSSVEDVFALGDCAGFLENSGRPVLPALAQVA 342
Query: 410 FQQADFA-----------GWNLWAAINDRPLL-PFRFQNLGEMMILGRNDAAV---SPSF 454
+Q F G ++A D PL PF +++LG M +GR A V
Sbjct: 343 ERQGKFLVKFLNKIGKKDGGKAFSA-KDIPLGDPFVYKHLGSMASVGRYKALVDLRQSKD 401
Query: 455 VEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 492
+GV+L G + + AYL R+ + +R V V+W T
Sbjct: 402 AKGVSLAGFVSWLIWRSAYLTRVISWRNRFYVAVNWAT 439
>gi|89100537|ref|ZP_01173397.1| NADH dehydrogenase [Bacillus sp. NRRL B-14911]
gi|89084724|gb|EAR63865.1| NADH dehydrogenase [Bacillus sp. NRRL B-14911]
Length = 405
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/414 (24%), Positives = 163/414 (39%), Gaps = 97/414 (23%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP+I ILG G+GGL A RL+ V ++ +++LV++++ L+E +G +
Sbjct: 2 KKPKIVILGAGYGGLMVATRLQKQVGVNE--AEIVLVNKNDYHYETTWLHEASAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +++ ++F + + + V+LE G V YD+LV+
Sbjct: 60 RVRYDVKNVIDRNKIEFVQGTAVEIKTEEK-------------KVILEEGE-VTYDYLVV 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK------------ 245
SLGAEP+ + G AF + +A R R+ E + + EEK
Sbjct: 106 SLGAEPETFGIKGLDVHAFSIINV-NAARQIREHIEYQFATYNTEEEKKDERLTIVVGGA 164
Query: 246 ---GI-----------------------VQAINVET--TICPTGTPGNREAALKVLSARK 277
GI V+ I VE T+ P P A+ L +
Sbjct: 165 GFTGIEFLGELANRVPELCKEYDVDYSKVKIICVEAAPTVLPGFDPELVNYAVSHLEKKG 224
Query: 278 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 337
VQ ++G ++K+ I D+ E + +A
Sbjct: 225 VQFLIG-------------TAIKECNEDGITVGKGDE----------------EVEHIKA 255
Query: 338 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALR 395
V+W G + N+ + + + A RG+ + L V GH +F +GD S +
Sbjct: 256 GTVVWAAGVR--------GNSIIENSGIEAMRGRVKVQPDLRVPGHEDLFIIGDCSLIIN 307
Query: 396 DSSGRPLPATAQVAFQQADFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDA 448
+ RP P TAQ+A QQ + N+ A I N L F G + LG +DA
Sbjct: 308 EEINRPYPPTAQIAMQQGEVCARNIVALIRNKGELETFTPDIKGTVCSLGEDDA 361
>gi|261319314|ref|ZP_05958511.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella pinnipedialis B2/94]
gi|265986686|ref|ZP_06099243.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella pinnipedialis M292/94/1]
gi|261298537|gb|EEY02034.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella pinnipedialis B2/94]
gi|264658883|gb|EEZ29144.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella pinnipedialis M292/94/1]
Length = 424
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/430 (26%), Positives = 181/430 (42%), Gaps = 53/430 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ++G GFGGL L D K ++ L+DQ +F+P+LY++ + + EI
Sbjct: 7 PHIVVVGAGFGGLQLIRDL------DGAKVRITLIDQRNHHLFQPLLYQVATTILSTSEI 60
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A +L F+DR ++ + LG + T +V LE+G V YD LVL+
Sbjct: 61 AWPIRNL--------FRDRAEV---TTLLGTVIDVD-TARKSVFLENGDEVSYDMLVLAT 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFERLEEKGIVQAINVETTIC 258
GA + A LEDA + R L ER ER + QA+ + +I
Sbjct: 109 GARHAYFGNDQWEKLAPGLKALEDATTIRRRLLLAFERA--EREPDMARRQAL-LTFSIV 165
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP---NI 310
G G A + AR+ R + +A V E+G A P +
Sbjct: 166 GGGPTGVELAGIIAELARRT------LWPEFRNIDTRQARVLLLEAGPRILSAFPEDLSA 219
Query: 311 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE----PPNNRLHDLPLN 366
A + +K +E++ G+ + + V TVG + + H L L+
Sbjct: 220 YARRALEKLGVEVR---LGIPVKDITQEGV--TVGDEFIPCHTTVWAAGVAASPAALWLD 274
Query: 367 AR----GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
A G+ + L V GH IFA+GD++ + GRP+P A A QQ + + +
Sbjct: 275 AESDRAGRVKVLSNLSVPGHEDIFAIGDTAWVEGDDGRPVPGIAPAAKQQGAYVAKVIRS 334
Query: 423 AI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
+ N P LPFR+++ G + +G+ A V + L G I +A++ L
Sbjct: 335 RVENKTPPLPFRYKHQGNLATIGKGAAVVDMGRIR---LKGTIAWWFWGIAHIFFLIGTR 391
Query: 482 HRLKVGVSWL 491
R + SWL
Sbjct: 392 SRAAMAWSWL 401
>gi|452975953|gb|EME75770.1| NADH dehydrogenase-like protein Ndh [Bacillus sonorensis L12]
Length = 392
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 93/393 (23%), Positives = 148/393 (37%), Gaps = 68/393 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG G+GGL +AL + +++ + +V+Q L+ L +G V IA
Sbjct: 4 HIVILGAGYGGLLSALTVRKHYSKEE--ATITVVNQYPTHQIITELHRLAAGNVSEQAIA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
A L + +V V L G + YD LV+ LG
Sbjct: 62 MPLAKLFKGKDIDLKIAKVNSFSVDKK-------------EVALSDGSTLTYDALVVGLG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG------------IV 248
+ +PG E + + DA ++ + + E R + + + + V
Sbjct: 109 SVTAYFGIPGLEENSMVLKSANDAKKIFKHVEE-RVREYSKTKNEADATILIGGGGLTGV 167
Query: 249 QAINVETTICPTGTPGNR-----------EAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
+ + I P T EA K+L L+ +R EF
Sbjct: 168 ELVGELADIMPNLTKKYGVNPKEIKLKLVEAGPKILPVLPDDLIARATASLEKRGVEFLT 227
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEP 355
+ P + N+ K+ K + A+ +WT G PL+
Sbjct: 228 GL--PVTNVEGNVIDLKDGSKVV----------------ANTFVWTGGVQGNPLVGE--- 266
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
L +N RG+A +E L H +F GDS+ + GRP P TAQ+A+Q +
Sbjct: 267 -----SGLEVN-RGRATVNEFLQSTSHEDVFVAGDSAVVFGPDGRPYPPTAQIAWQMGEL 320
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
G+NL+A + ++ L F N G + LGR DA
Sbjct: 321 IGYNLYAYLENKSLETFSPVNSGTLASLGRKDA 353
>gi|404369785|ref|ZP_10975115.1| hypothetical protein CSBG_02910 [Clostridium sp. 7_2_43FAA]
gi|226914083|gb|EEH99284.1| hypothetical protein CSBG_02910 [Clostridium sp. 7_2_43FAA]
Length = 624
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/390 (22%), Positives = 160/390 (41%), Gaps = 61/390 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I +LG G+GG+ TA +L + + ++ L+D++ L+E+ G V
Sbjct: 3 KNKILVLGAGYGGVRTAKKLAKKY-KKNNDVEITLIDRNPYHTLMTELHEVAGGRVHPES 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ + + V D ++ + N + T+G YD+LV+
Sbjct: 62 VQVELCKIFGKSKVNVVTDFIEKVDTD-----NKVVKTTYGE---------YSYDYLVIG 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE------LERRNFERLEEKGIVQAIN 252
G+EP VPG E F + EDA ++ + + + LER +R E + A +
Sbjct: 108 TGSEPAFFGVPGVKENGFTLWSFEDALKIRKHIQDMFAKASLERNAAKRKEMLTFIVAGS 167
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES-GAIPNIA 311
T I G L K +L Y V E E ++K E+ G I N+
Sbjct: 168 GFTGIEMAGE----------LLEWKTRLAREY------NVDESEVTLKVVEAMGTILNML 211
Query: 312 ADKNSDKY----------ILELQPAIKGLESQI-------FEADLVLWTVGSKPLLPHVE 354
K +DK IL+ P ++ E++I ++WT G +
Sbjct: 212 DRKQADKAEKYMVKHGMEILKNSPIVEVTENKIVLKSGEKINTRTLIWTCGIQA------ 265
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 414
+ + + L G+ +T+E + G +F +GD + + +G+ P + A Q AD
Sbjct: 266 NQDAKEYGLDTARAGRLQTNEFMQAVGKKDVFVVGDMAYFEEEAGKGTPQIVEAAVQTAD 325
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
N+ A+I ++ + F+ + G M+ +G
Sbjct: 326 TVVKNIVASIENKEMQKFQGKYHGFMVSIG 355
>gi|374708668|ref|ZP_09713102.1| putative NADH dehydrogenase [Sporolactobacillus inulinus CASD]
Length = 396
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 368 RGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNLWAAIND 426
RG+ + L V GHP I +GD SA+ D SG+P P TAQ+A QQAD A +N+ A ++D
Sbjct: 273 RGRVRVMDDLSVPGHPEILIIGDCSAVIDPGSGQPYPTTAQIALQQADCAAYNVKAMLDD 332
Query: 427 RPLLPFRFQNLGEMMILGRNDA 448
RP F F+ G + LGR+DA
Sbjct: 333 RPTKSFVFKFKGTVCSLGRDDA 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 21/157 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKPMLYELLSGEVDA 136
+ RI ILG G+GGL T RL+ + KP +++L+D+++ K L+E+ +G +A
Sbjct: 2 RKRIVILGAGYGGLRTLKRLQRM------KPNAELILIDKNDYHCEKTSLHEVAAGTANA 55
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EI ++ QF +D V L V+ + L+ + YD+LV
Sbjct: 56 DEICYSLQQVIDPKRTQFIQDTV--------LRVD-----RESRRIQLKEHKPISYDYLV 102
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE 233
+ LG P+ + G F S + R+ + +
Sbjct: 103 IGLGFVPEYYGIEGMDRFGLAISDIPSVIRIRNHIED 139
>gi|299066169|emb|CBJ37352.1| NADH dehydrogenase [Ralstonia solanacearum CMR15]
Length = 441
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/410 (24%), Positives = 161/410 (39%), Gaps = 37/410 (9%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
+ +V+L+D++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLIDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKGLDRAA 96
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
G VL E + YD LVL++G+ VPG AE A A R
Sbjct: 97 KTVTVSGCVDADGTEVLPER--TIAYDMLVLAIGSVTHFFGVPGTAEHAIALDAASQAER 154
Query: 227 VDRKLSELERRNFERLEEKGIVQA-INVETTICPTGTPG--------NREAALKVLSARK 277
RKL R + G+ A V+ I G G N L K
Sbjct: 155 FRRKLISACMR-----AQNGVGDARAQVDIAIVGAGATGVELSAELRNTAHVLAAYGLHK 209
Query: 278 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE-----LQPAIKGLES 332
+ + + I A++ + S + N + E A+K L
Sbjct: 210 LDPLRDIRIHLIEGSPRILAALSERVSSETTKLLQKLNVEVITGERVNQVTDSAVKTLSG 269
Query: 333 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-S 391
+ ADL +W G + P LP+N GQ TL +G I+A GD +
Sbjct: 270 KSIPADLTVWAAGIRA------PSILGELGLPVNKLGQVVVSRTLQAEGDDAIYAFGDCA 323
Query: 392 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
S + +P AQ A QQA + L + +P+ PF F++LG ++ LG A
Sbjct: 324 SCPWPEASTSVPPRAQAAHQQATYLYKALCRRLEGKPVEPFGFKDLGSLVSLGHFSAV-- 381
Query: 452 PSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLTKSAIDSV 499
G + G IG + + RL T +R+ V + + A+D+V
Sbjct: 382 -----GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFVRMALDTV 426
>gi|421891277|ref|ZP_16322088.1| NADH dehydrogenase [Ralstonia solanacearum K60-1]
gi|378963386|emb|CCF98836.1| NADH dehydrogenase [Ralstonia solanacearum K60-1]
Length = 441
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 103/411 (25%), Positives = 170/411 (41%), Gaps = 39/411 (9%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL-CPS 165
+ +V+LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKSLDRAA 96
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ V+G + G VL E + YD LVL++G+ VPG AE A A
Sbjct: 97 KTITVSGCVDAD-GTEVLPERA--IAYDMLVLAIGSVTHFFGVPGTAEHAIALDAASQAE 153
Query: 226 RVDRKLSELERRNFERLEEKGIVQA-INVETTICPTGTPG--------NREAALKVLSAR 276
R RKL R + G+ A V+ I G G N L
Sbjct: 154 RFRRKLIAACMR-----AQNGMGDARAQVDIAIVGAGATGVELSAELRNTAHVLAAYGLH 208
Query: 277 KVQLVLGYFVRCI----RRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLE 331
K+ + + I R + V + + + D + + ++E+ A+K
Sbjct: 209 KLDPLRDIRIHLIEGSPRILAALSERVSAETTKLLHKLNVDVITGERVVEVTDSAVKTGS 268
Query: 332 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD- 390
+ ADL +W G + P LPL+ GQ TL V+G I+A GD
Sbjct: 269 GKSIPADLTVWAAGIRA------PAILGELGLPLSRLGQVVVSRTLQVEGDDAIYAFGDC 322
Query: 391 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
+S + +P AQ A QQA + + + +P+ PF F++LG ++ LG A
Sbjct: 323 ASCPWPEASTSVPPRAQAAHQQATYLYKAMRRRLQGKPVEPFGFKDLGSLVSLGHFSAV- 381
Query: 451 SPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLTKSAIDSV 499
G + G IG + + RL T +R+ V + + A+D+V
Sbjct: 382 ------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFVRMALDTV 426
>gi|190894007|ref|YP_001984301.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Rhizobium etli CIAT 652]
gi|190699668|gb|ACE93751.1| putative FAD-dependent pyridine nucleotide-disulphide
oxidoreductase protein [Rhizobium etli CIAT 652]
Length = 470
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 93/396 (23%), Positives = 164/396 (41%), Gaps = 41/396 (10%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLAN-TGVQFFKDRVKLLCPSDHLG 169
V +VD+ +F+P+LY++ + + +IA LA + V + P H
Sbjct: 46 VTVVDRRNHNLFQPLLYQVATAALSPADIAEPIRKTLARFKNINMIMAEVVGIDPRLH-- 103
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
V L G + YD LV++ G++ +FA ++ +A +
Sbjct: 104 -----------KVSLSDGDPLSYDKLVIATGSDYNYFGHDEWRQFAPGLKSIHEARHIRH 152
Query: 230 KLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKV------LSARKVQLVLG 283
+L L ER + + QA+ T+I G P E A + + +R + +
Sbjct: 153 RLL-LAFEKAERAKSEPEKQAL--LTSIVIGGGPTGVEMAGAISELGRFMISRDFRNLQP 209
Query: 284 YFVRCI------RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 337
Y ++ I R + F + + NI + + + +++++ +E + A
Sbjct: 210 YNLKVILVEAGPRILAAFPEHLSAYAKSYLENIGVEVRTGRRVMDIREDGAEIEGEFVPA 269
Query: 338 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 397
++W G K P + +P A G+ D+ L V G I+A+GD+SAL +
Sbjct: 270 GSIIWGAGVKA------SPAHSWLGIPGLAGGRIPVDDHLRVLGFDDIYAIGDTSALTGA 323
Query: 398 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG 457
G+ LP AQVA QQ + G +L + + F+F+N G ++GRN A
Sbjct: 324 DGKLLPGLAQVAKQQGTYLGKSLRMG---KAVSGFKFKNRGNTAVIGRNAAVFD---FGK 377
Query: 458 VTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTK 493
TL G L ++ L E RL V + W+ +
Sbjct: 378 WTLKGRAAWLLWALVHVYLLINFEKRLLVAIQWVGR 413
>gi|126651101|ref|ZP_01723312.1| YjlD [Bacillus sp. B14905]
gi|126592302|gb|EAZ86351.1| YjlD [Bacillus sp. B14905]
Length = 394
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 158/404 (39%), Gaps = 82/404 (20%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG G+ G+ TAL + D+ K + +V+Q L+ L G + +A
Sbjct: 4 EIVILGAGYAGVLTALTARKYLSADEAK--ITVVNQFPTHQIITELHRLAGGTIAEGAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ + +V + V L++G + YD LV+SLG
Sbjct: 62 LPLKKIFKGLDIDLHIAKVTKFNVDNK-------------KVDLDNGYTLTYDTLVVSLG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR----------------------- 237
++ +PG E + ++ DA ++++ + + +
Sbjct: 109 SQTGFFGIPGLEENSMVLKSVNDANKINKHIEDRIKAYAQSKDEADATIVIGGGGLTGVE 168
Query: 238 -------NFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 290
NF ++ K V +++ + EA K+L L+ +
Sbjct: 169 LVGEIVDNFPKIAAKHGVNFADLKIKLV--------EAGPKILPVLPDTLIQRATESLTK 220
Query: 291 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350
R EF P +G N+ + K+ + I A+ ++WT G PL
Sbjct: 221 RGVEFITGT--PVTGVDGNVISLKDREPII----------------ANTLVWTGGVAPL- 261
Query: 351 PHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPA-TAQ 407
P V L A RG+A +E L H +F +GD+S AL GRPL A TAQ
Sbjct: 262 PLVGESG-------LAADRGKATINEFLQSTSHEDVFVIGDASVALPADGGRPLYAPTAQ 314
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
VA+Q + AG+N++A ++ + F N G + LGR DA +
Sbjct: 315 VAWQMGELAGYNVFAQYKNQEMKTFSAVNSGTLASLGRKDAVAT 358
>gi|393200719|ref|YP_006462561.1| NADH dehydrogenase, FAD-containing subunit [Solibacillus silvestris
StLB046]
gi|327440050|dbj|BAK16415.1| NADH dehydrogenase, FAD-containing subunit [Solibacillus silvestris
StLB046]
Length = 395
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 177/430 (41%), Gaps = 80/430 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG GF G+ A + +D+ + + +V+Q L+ L G + +A
Sbjct: 5 EIVILGAGFAGVLAAQTARKYLNKDEAR--ITVVNQFPTHQIITELHRLAGGTIAEGAVA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ + +V V+L +G ++YD LV++LG
Sbjct: 63 LPLEKIFKGYDINLEIAKVNSFDVESK-------------NVVLSNGKRLQYDTLVVALG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ +PG E +F ++++A + R+ E + + +++ + TI
Sbjct: 110 SQTGFFGIPGLEENSFVLKSVDEANAI-REHIEARIKAYATTKDEA-------DATIVIG 161
Query: 261 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVG-EFE-ASVKQPESGAIPNIA------- 311
G + V ++ +F + + G +FE +K E+G P I
Sbjct: 162 GG--------GLTGVELVGEIVDHFPKVAAKYGVKFEDLKIKLVEAG--PKILPVFPENL 211
Query: 312 ---ADKNSDKYILELQPA--IKGLESQIFE--------ADLVLWTVGSKPLLPHVEPPNN 358
A K+ K +E + + G+E + + A+ ++WT G PL
Sbjct: 212 IDRATKSLSKRGVEFITSTPVTGVEGNVIQLKDREPIVANTLVWTGGVAPL--------- 262
Query: 359 RLHDLPLNA-------RGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPA-TAQVA 409
PL A RG+A ++ L HP +F +GD+SA + G RP A TAQVA
Sbjct: 263 -----PLVAESGLAADRGKATINDFLQSTSHPEVFVIGDASAHIPNPGDRPTYAPTAQVA 317
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND--AAVSPSFVEGVTLDGPIGHS 467
+QQ + AG+N++A I L F+F N G + LGR D A V + + V L +
Sbjct: 318 WQQGETAGYNIFAQIKGADLKEFKFTNSGTLGSLGRKDGIATVGANNTQLVGLPASLMKE 377
Query: 468 ARKLAYLIRL 477
A + Y+ +
Sbjct: 378 ASNIRYMTHI 387
>gi|424913112|ref|ZP_18336486.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. viciae USDA 2370]
gi|392844269|gb|EJA96792.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. viciae USDA 2370]
Length = 421
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 107/440 (24%), Positives = 171/440 (38%), Gaps = 75/440 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL----LSGEVDA 136
R+ I+GGGF GL A L+ L + ++D+ +F+P+LY++ L+ A
Sbjct: 5 RVVIVGGGFAGLQVAKDLKRL------GISITIIDKRNHHLFQPLLYQVATTVLATSDVA 58
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
W I F + KD LL + V+ + V L+ G + YD LV
Sbjct: 59 WPIRAVF---------RGRKDVTTLLGEVVGVDVDRRL-------VSLKDGKAIAYDTLV 102
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
L+ GA G FA LEDA + R+L FER E + +A N T
Sbjct: 103 LATGARHAYFGQDGWERFAPGLKALEDATTIRRRLL----LAFERAELETDPEARNALLT 158
Query: 257 IC-----PTGTP--------GNRE----------AALKVLSARKVQLVLGYFVRCIRRVG 293
PTG +R AA ++L VL F + R
Sbjct: 159 FSIIGAGPTGVELAGIIAELAHRTLVEEFRSIDTAAARILLVEAGPRVLPVFPDSLSRYA 218
Query: 294 EFE-ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 352
E A + P A D+N E P+ ++W G +
Sbjct: 219 EHSLAKMGVEVRTGRPVTACDENGITIGDEFVPS-----------RTIIWAAGVQASKAA 267
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
V ++ + G+A L V P IF +GD++ ++ G P+P A A QQ
Sbjct: 268 VWVGTDK------DRAGRAIVQSDLTVAQRPEIFIIGDTAFVKTGEGNPVPGVAPAAKQQ 321
Query: 413 ADFAGWNLWAAINDRPLLP-FRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
+ + A ++ +P P FR+++LG + +G + A + ++ + G + L
Sbjct: 322 GKYVAKVIRARLSRKPAPPNFRYKHLGNLATIGPSSAVIDFGKLQ---VKGALAWWIWGL 378
Query: 472 AYLIRLPTDEHRLKVGVSWL 491
++ L R+ V +SWL
Sbjct: 379 VHIYFLIGTRSRMAVALSWL 398
>gi|444430066|ref|ZP_21225245.1| putative NADH dehydrogenase [Gordonia soli NBRC 108243]
gi|443889071|dbj|GAC66966.1| putative NADH dehydrogenase [Gordonia soli NBRC 108243]
Length = 444
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/441 (23%), Positives = 175/441 (39%), Gaps = 50/441 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PR+ I+GGGFGGL+ A RL V ++D+ +F+P+LY+ +G +
Sbjct: 12 RPRVLIVGGGFGGLHAARRLAH------ADASVTVLDRGTSHLFQPLLYQCATGLLSQGA 65
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
I+ LL + R + + GV+ A T + S + YD+LV++
Sbjct: 66 ISSPIRHLLR-------RQRNAEVALGEASGVDA-AARTVTVSRFDGSTYDIGYDYLVVA 117
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------------SELERRNFERLEEKG 246
G A FA TL+DA + RK+ +E R G
Sbjct: 118 AGMRTSYHGNDDFARFAPGMKTLDDALAIRRKVIAAFEMAESLPDAEQRRPWLTFAVAGG 177
Query: 247 IVQAINVETTICPTGTPG--NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 304
+ + I T N ++ AR + L G R + F A + +
Sbjct: 178 GPTGVEIAGQIRELATLALENEFRSIDTAEARVLLLHGGD-----RVLPSFGARLSKHAQ 232
Query: 305 GAIPNIAADKNSDKYI-------LELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
+ ++ + + ++ +E+ P + + LWT G + + P +
Sbjct: 233 STLDDLGVETHLGVHVTDVTADDVEVTPKAEPRTPVRYPTKTTLWTTGVEAV-PFAKALA 291
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
+ L + + G+ L V GHP +F +GD SAL D LP A+VA Q AG
Sbjct: 292 STL-GVEQDRSGRIPVQPDLSVAGHPNVFVVGDMSALDD-----LPGVAEVAMQGGRHAG 345
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
+ ++ + PF++++LG + R A V + L G IG A + ++ L
Sbjct: 346 AVIAETLSGKGRRPFKYRDLGNAAYIARRHAIVESGRLN---LHGFIGWLAWGVIHIAFL 402
Query: 478 PTDEHRLKVGVSWLTKSAIDS 498
+R+ ++W DS
Sbjct: 403 AGIRNRMGTILTWAATLLTDS 423
>gi|294678107|ref|YP_003578722.1| NADH dehydrogenase, cyclic nucleotide-regulated [Rhodobacter
capsulatus SB 1003]
gi|294476927|gb|ADE86315.1| NADH dehydrogenase, cyclic nucleotide-regulated [Rhodobacter
capsulatus SB 1003]
Length = 549
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 115/443 (25%), Positives = 181/443 (40%), Gaps = 75/443 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV-DAWEI 139
RI +LGGGFGG+YTA +L + +K ++ L++ FVF+P+L E+ +G + A +
Sbjct: 4 RIVVLGGGFGGMYTA---RALARRLGRKAEIELINAENYFVFQPLLPEVGAGSIMPAHAV 60
Query: 140 AP-RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+P RF LL GVQ K V D + M G + V YD LV++
Sbjct: 61 SPLRF--LL--KGVQVRKAVV------DSVDFERKMVIVFQG--IQRRPTEVPYDHLVIA 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG +PG E A TLEDA RL E I Q + + T
Sbjct: 109 LGQGADFSRMPGLEEHALKMKTLEDA---------------RRLREHVIEQLEHAQVTAL 153
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES------------GA 306
P G + V+ V G + R F +++ E
Sbjct: 154 PDTKRGALTFTVVGGGFSGVETV-GEMKELLDRSLPFYSNIDPSEVRVLLVEYAPRILNE 212
Query: 307 IPNIAADKNS---DKYILELQPAIKGLES-----------QIFEADLVLWTVGSKPLLPH 352
+P AD + +++ +EL+ G+ S ++ + ++ T+G+ PL
Sbjct: 213 MPKELADYATAHLERHGIELKLG-TGVRSATHRQLVTSDGEVIDTRTIVATIGNAPL--- 268
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS--ALRDSSGRP---LPATAQ 407
P LPL +G+ D +L VKG ++ALGD + L+D + P TAQ
Sbjct: 269 ---PVILRMGLPLE-KGRVAVDRSLRVKGRTDVWALGDCALIPLKDDAAERNDFAPPTAQ 324
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 467
A ++A N+ A + R F + + G + LG + G + G
Sbjct: 325 FAVREAKRVAANITAVLKGRAPGVFAYSSRGALASLGAKRGVAD---IFGRNITGFPAWF 381
Query: 468 ARKLAYLIRLPTDEHRLKVGVSW 490
+ YL LP R++V ++W
Sbjct: 382 IWRSYYLALLPGIGTRIRVMINW 404
>gi|422500098|ref|ZP_16576354.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL063PA2]
gi|313828931|gb|EFS66645.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL063PA2]
Length = 460
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 145/355 (40%), Gaps = 39/355 (10%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R AN G P H
Sbjct: 51 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAANNG------------PHTHF-- 96
Query: 171 NGPMAC-----THGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
AC T V +++G + YD+LVLS G PGAAE ++ T +
Sbjct: 97 --RRACVTGIDTENRIVEVDNGDPISYDYLVLSQGVGANFFGTPGAAENSYTIYTRASSL 154
Query: 226 RV-DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNRE-----AALKVLSARKVQ 279
R D + LE + +R + ++ T + GT + A +S +V
Sbjct: 155 RARDAIFTYLEDLDTQRDKTFDVIIVGGGPTGVEMAGTLAEMKSIGIPAIFPDVSTDRVH 214
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEAD 338
+ L + + F+ +++ + D ++ I E+ + ++ + Q AD
Sbjct: 215 VTLVEMANHL--LMPFDPALRHYTRRQLQKRGVDVRTNTAIAEVREDSVLLKDGQTLPAD 272
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 398
+V+W G + H N G+ TD TL V+G RIFA+GD + ++
Sbjct: 273 MVIWAAG---VGAHKSVTN---WGFEQGRGGRIATDGTLLVEGQDRIFAVGDGAI---NT 323
Query: 399 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 453
P P AQ A Q + + PL F + + G M +GRN A V S
Sbjct: 324 EDPKPQLAQPAIQGGECVARQIVHLELGEPLEKFEYNDKGTMATIGRNSAVVQLS 378
>gi|78211845|ref|YP_380624.1| type 2 NADH dehydrogenase [Synechococcus sp. CC9605]
gi|78196304|gb|ABB34069.1| putative type 2 NADH dehydrogenase [Synechococcus sp. CC9605]
Length = 504
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/441 (23%), Positives = 184/441 (41%), Gaps = 63/441 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ P + I+GGGF G++ ++L D + + L+D+ +F+P+LY++ +G V
Sbjct: 18 RDAPHVVIVGGGFAGVHAC---KALAKADVR---ITLIDKRNFNLFQPLLYQVATGLVSR 71
Query: 137 WEIAPRFADLLANTG-VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A +L+ G VQ V + P G ++ +G YD L
Sbjct: 72 SDVATPLRELVGTQGNVQVLLGEVTAVNPE--------------GKQIVFNGKAYSYDHL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAIN-VE 254
+L+ G+ FA P LE A + R+L E+ E+ +A ++
Sbjct: 118 ILATGSGSTYFGHEDWRTFAPPMKILEHAEEIRRRL----LMAMEQAEQTPNPEARQFLQ 173
Query: 255 TTICPTGTPGNRE--------------AALKVLSARKVQLVL-GYFVRCIRRVGE--FEA 297
T + G P E +A K L ++K ++VL R +R + E +
Sbjct: 174 TVVIVGGGPTGCEMAGAVSELMRWALNSAFKQLDSQKTRIVLVDPGDRVLRAMPEELSKD 233
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPA---IKGLESQI-FEADLVLWTVGSKPLLPHV 353
+ K E + I + + ++P I + + +A V+WT G KP H+
Sbjct: 234 AQKTLELNGVEFIPQGR-----VQTMRPGEVVISSPDGDVRIQAATVIWTAGVKP--SHL 286
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQ 412
L+ G+ + + HP I GD + + +G+PLP A A Q
Sbjct: 287 GQKLTEATGCELDRGGRVIVNPDFSIPNHPEIRIAGDLCSYSHTVNGKPLPGMAAPAKQA 346
Query: 413 ADFAGWNLWAAI--NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARK 470
F G ++ A + DRP FR+ + G M ++ A + + + G + G +G
Sbjct: 347 GTFIGKDIAAIVAGQDRPT--FRYFDFGSMAVV----QASAVADLHGFKVSGRMGLLLWA 400
Query: 471 LAYLIRLPTDEHRLKVGVSWL 491
+ +L +P E+R+ + + WL
Sbjct: 401 IVHLALMPNRENRITLSIKWL 421
>gi|422550630|ref|ZP_16626427.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL050PA1]
gi|314917226|gb|EFS81057.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL050PA1]
Length = 460
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 145/355 (40%), Gaps = 39/355 (10%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R AN G P H
Sbjct: 51 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAANNG------------PHTHF-- 96
Query: 171 NGPMAC-----THGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
AC T V +++G + YD+LVLS G PGAAE ++ T +
Sbjct: 97 --RRACVTGIDTENRIVEVDNGDPISYDYLVLSQGVGANFFGTPGAAENSYTIYTRASSL 154
Query: 226 RV-DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNRE-----AALKVLSARKVQ 279
R D + LE + +R + ++ T + GT + A +S +V
Sbjct: 155 RARDAIFTYLEDLDTQRDKTFDVIIVGGGPTGVEMAGTLAEMKSIGIPAIFPDVSTDRVH 214
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEAD 338
+ L + + F+ +++ + D ++ I E+ + ++ + Q AD
Sbjct: 215 VTLVEMANHL--LMPFDPALRHYTRRQLQKRGVDVRTNTAIAEVREDSVLLKDGQTLPAD 272
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 398
+V+W G + H N G+ TD TL V+G RIFA+GD + ++
Sbjct: 273 MVIWAAG---VGAHKSVTN---WGFEQGRGGRIATDGTLLVEGQDRIFAVGDGAI---NT 323
Query: 399 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 453
P P AQ A Q + + PL F + + G M +GRN A V S
Sbjct: 324 EDPKPQLAQPAIQGGECVARQIVHLELGEPLEKFEYNDKGTMATIGRNSAVVQLS 378
>gi|386720144|ref|YP_006186470.1| NADH dehydrogenase [Stenotrophomonas maltophilia D457]
gi|384079706|emb|CCH14308.1| NADH dehydrogenase [Stenotrophomonas maltophilia D457]
Length = 426
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 164/394 (41%), Gaps = 54/394 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + ++GGGF GL+ L ++ ++ LVD+ +F+P+LY++ + + A
Sbjct: 4 ERVPHLVVVGGGFAGLWATRALAR------ERIRITLVDRRNHHLFQPLLYQVATAGLSA 57
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA +L + + + R+ + D MA G ++YD L+
Sbjct: 58 PDIAAPLRHILGHQ--RNVEVRLGEVVAIDKQARQIGMA----------DGSTLDYDSLL 105
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG--IVQAINVE 254
L+ GA A+ A TL+DA + RKL FER E + +A +
Sbjct: 106 LATGATHAYFGNDQWADDAPGLKTLDDAIALRRKLL----LAFERAEAEPDPARKAAWLS 161
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--------A 306
I G G A AR R + A V+ E+G
Sbjct: 162 FAIVGGGPTGVELAGTLAEIARHT------LRNEFRHIDPASAKVRLVEAGPRVLSSFPE 215
Query: 307 IPNIAADKNSDKYILELQPA--IKGLESQIFE-------ADLVLWTVGSKPLLPHVEPPN 357
+ ++ A + +K +E+ + ++SQ F+ A V+W G P
Sbjct: 216 VLSLKARRQLEKLGVEVLTGTPVSDIDSQGFKLGEQFVPARTVVWAAGV------AASPL 269
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
R D+PL+ G+ + L + HP +F GD +AL + G+P+P A A Q +
Sbjct: 270 ARTLDVPLDRAGRVQVQPDLTLPDHPELFVAGDLAALSQADGKPVPGVAPAAKQMGKYVA 329
Query: 418 WNLWAAINDRPLL-PFRFQNLGEMMILGRNDAAV 450
+ A ++ +P PF++ + G + +GR A V
Sbjct: 330 EVVRARLHGKPEPGPFKYADYGNLATIGRMAAIV 363
>gi|335052545|ref|ZP_08545426.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium sp.
409-HC1]
gi|342213089|ref|ZP_08705814.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium sp.
CC003-HC2]
gi|365961880|ref|YP_004943446.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes TypeIA2 P.acn31]
gi|365964124|ref|YP_004945689.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes TypeIA2 P.acn17]
gi|365973068|ref|YP_004954627.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes TypeIA2 P.acn33]
gi|419420384|ref|ZP_13960613.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes PRP-38]
gi|422394825|ref|ZP_16474866.1| NADH dehydrogenase [Propionibacterium acnes HL097PA1]
gi|422426901|ref|ZP_16503819.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL087PA1]
gi|422432190|ref|ZP_16509060.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL059PA2]
gi|422434785|ref|ZP_16511643.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL083PA2]
gi|422442510|ref|ZP_16519313.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL002PA1]
gi|422446299|ref|ZP_16523044.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL027PA1]
gi|422450363|ref|ZP_16527080.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL030PA2]
gi|422452943|ref|ZP_16529639.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL087PA3]
gi|422494494|ref|ZP_16570789.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL025PA1]
gi|422511231|ref|ZP_16587374.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL059PA1]
gi|422538647|ref|ZP_16614521.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL013PA1]
gi|422541435|ref|ZP_16617293.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL037PA1]
gi|422546210|ref|ZP_16622037.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL050PA3]
gi|422556979|ref|ZP_16632726.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL025PA2]
gi|422562202|ref|ZP_16637880.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL046PA1]
gi|422570813|ref|ZP_16646408.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL067PA1]
gi|422577951|ref|ZP_16653480.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA4]
gi|313764848|gb|EFS36212.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL013PA1]
gi|313814057|gb|EFS51771.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL025PA1]
gi|313815591|gb|EFS53305.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL059PA1]
gi|314916388|gb|EFS80219.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL005PA4]
gi|314921603|gb|EFS85434.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL050PA3]
gi|314930748|gb|EFS94579.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL067PA1]
gi|314955132|gb|EFS99537.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL027PA1]
gi|314959328|gb|EFT03430.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL002PA1]
gi|314969219|gb|EFT13317.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL037PA1]
gi|315099599|gb|EFT71575.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL059PA2]
gi|315102169|gb|EFT74145.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL046PA1]
gi|315109959|gb|EFT81935.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL030PA2]
gi|327334723|gb|EGE76434.1| NADH dehydrogenase [Propionibacterium acnes HL097PA1]
gi|327454421|gb|EGF01076.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL087PA3]
gi|327456487|gb|EGF03142.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL083PA2]
gi|328756180|gb|EGF69796.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL087PA1]
gi|328758561|gb|EGF72177.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL025PA2]
gi|333763380|gb|EGL40834.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium sp.
409-HC1]
gi|340768633|gb|EGR91158.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium sp.
CC003-HC2]
gi|365738561|gb|AEW82763.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes TypeIA2 P.acn31]
gi|365740805|gb|AEW80499.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes TypeIA2 P.acn17]
gi|365743067|gb|AEW78264.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes TypeIA2 P.acn33]
gi|379978758|gb|EIA12082.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes PRP-38]
Length = 460
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 145/355 (40%), Gaps = 39/355 (10%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R AN G P H
Sbjct: 51 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAANNG------------PHTHF-- 96
Query: 171 NGPMAC-----THGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
AC T V +++G + YD+LVLS G PGAAE ++ T +
Sbjct: 97 --RRACVTGIDTENRIVEVDNGDPISYDYLVLSQGVGANFFGTPGAAENSYTIYTRASSL 154
Query: 226 RV-DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNRE-----AALKVLSARKVQ 279
R D + LE + +R + ++ T + GT + A +S +V
Sbjct: 155 RARDAIFTYLEDLDTQRDKTFDVIIVGGGPTGVEMAGTLAEMKSIGIPAIFPDVSTDRVH 214
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEAD 338
+ L + + F+ +++ + D ++ I E+ + ++ + Q AD
Sbjct: 215 VTLVEMANHL--LMPFDPALRHYTRRQLQKRGVDVRTNTAIAEVREDSVLLKDGQTLPAD 272
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 398
+V+W G + H N G+ TD TL V+G RIFA+GD + ++
Sbjct: 273 MVIWAAG---VGAHKSVTN---WGFEQGRGGRIATDGTLLVEGQDRIFAVGDGAI---NT 323
Query: 399 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 453
P P AQ A Q + + PL F + + G M +GRN A V S
Sbjct: 324 EDPKPQLAQPAIQGGECVARQIVHLELGEPLEKFEYNDKGTMATIGRNSAVVQLS 378
>gi|168699122|ref|ZP_02731399.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Gemmata obscuriglobus UQM 2246]
Length = 473
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/450 (24%), Positives = 182/450 (40%), Gaps = 81/450 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDA 136
+ ++ I+GGGF GLY A L + P V L+D+ +F+P+LY++ +G + A
Sbjct: 3 HRNKVVIVGGGFAGLYCAQGLR-------RSPVDVTLIDRRNFHLFQPLLYQVATGALSA 55
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
IA +L ++ V LL + P A V+L G V +D LV
Sbjct: 56 ANIAAPLRGVLGRQ-----RNAVVLLGEVSDID---PAARA----VVLADGDRVPFDTLV 103
Query: 197 LSLGA-----------EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK 245
++ GA EP + PG T+EDA + RKL FER E
Sbjct: 104 VAAGATHHYFGHDADWEP---IAPG-------LKTVEDATEIRRKLLS----AFERAERA 149
Query: 246 GIVQAINVETTICPTGTPGNREAA--LKVLSARKVQLVLGYF----VRCI------RRVG 293
+ T + G P E A ++ L+ ++ +F R + R +
Sbjct: 150 PPEARKRLLTFVVVGGGPTGVEMAGSVRELARHTLRRDFRFFDPADARVVVVESQPRVLA 209
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQP------AIKGLESQIFEADLVLWTVGSK 347
F + + + A+ + + +D + + P A ++ + + V+W G K
Sbjct: 210 GFHEDLSRKAAAALDRLGIEVINDSRVTAVAPDHVVVTAKPDGSTRRIDTETVIWAAGVK 269
Query: 348 --PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 405
PLL + RL + ++ G V GHP +F +GD + R G+PLP
Sbjct: 270 ASPLLSRLAA---RL-GVEADSSGHLSVAADCTVSGHPWLFVIGDCATFRGEDGKPLPGV 325
Query: 406 AQVAFQQADFAGWNLWAAINDR-----PLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 460
A VA QQ + AI+ R P FR+++ G M + R+ A V +V
Sbjct: 326 APVAMQQGRYVA----DAIDRRARALPPPGAFRYRDKGSMATVSRSQAVVDLGWVR---F 378
Query: 461 DGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
G +++ L E+R+ V V W
Sbjct: 379 GGKPAWLTWLFVHILYLARFENRVLVLVQW 408
>gi|134095688|ref|YP_001100763.1| respiratory NADH dehydrogenase 2; cupric reductase [Herminiimonas
arsenicoxydans]
gi|133739591|emb|CAL62642.1| NADH dehydrogenase [Herminiimonas arsenicoxydans]
Length = 460
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 115/431 (26%), Positives = 186/431 (43%), Gaps = 57/431 (13%)
Query: 63 SEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122
S D + +Q + RI I+GGG GGL A L + + + + V+LVD+S ++
Sbjct: 9 SADTTTTQQRSGTGDAPHRIVIVGGGAGGLELATTLGNKLVKSGRI-SVVLVDRSSTHIW 67
Query: 123 KPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTV 182
KP+L+E+ +G +DA +A F + +K L + +A G +
Sbjct: 68 KPLLHEVAAGSMDANTHQLEYAAQARWHRFVFQQGELKGLDRTRKTISIASLADEDGIEL 127
Query: 183 LLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERL 242
L E + YD L+L++G+ VPGAA+ A TL +A R++ + R +
Sbjct: 128 LPERE--IAYDTLILAIGSVTNFFNVPGAAQHAIAVDTLSEAEHFRRRMIGMCMRAEHAI 185
Query: 243 EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG-YFVRCIRRVGEFEASVKQ 301
+ + + I G G +A R VLG Y + + + + +V +
Sbjct: 186 DTHAGQEHPKLNIAIIGAGATGVELSA----ELRNTAEVLGAYGLHQLDPLHDIRITVVE 241
Query: 302 ---------PESGAIPNIA------ADKNSDKYILELQP-AIKGLESQIFEADLVLWTVG 345
PE ++ A D +D + E++ A+ ADL +W G
Sbjct: 242 AGTRILSGLPEPVSVKTTALLNKLGIDVLTDAKVSEVRKDAVLFANGGSIPADLTVWAAG 301
Query: 346 SK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL----RDSSG 399
+ +L + NRL + + Q+ETD P IFA GD +A ++S+
Sbjct: 302 IRAPAILGELGLAVNRLGQIIVTQTLQSETD--------PDIFAFGDCAACPWPEKNST- 352
Query: 400 RPLPATAQVAFQQADFAGWNLWAAINDR----PLLPFRFQNLGEMMILGRNDAA------ 449
+P AQ A QQADF L+ AI R PL F +++LG ++ LGR DA
Sbjct: 353 --IPPRAQAAHQQADF----LFNAIKKRLAQQPLPAFEYRDLGSLVSLGRFDAVGNLMGP 406
Query: 450 --VSPSFVEGV 458
S F+EG+
Sbjct: 407 LIGSTLFIEGI 417
>gi|416075388|ref|ZP_11585053.1| Ndh protein [Aggregatibacter actinomycetemcomitans serotype b str.
SCC1398]
gi|348006243|gb|EGY46687.1| Ndh protein [Aggregatibacter actinomycetemcomitans serotype b str.
SCC1398]
Length = 452
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 163/392 (41%), Gaps = 50/392 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ V L+D+++ ++KP+L+EL +G +D A + N F + + L
Sbjct: 28 KRANVTLIDRNQTHLWKPLLHELATGALDDGVEALSYRAHACNHHFNFEQGSMVGLNRQH 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G +++ + YD+LV+++G++ G AE A R
Sbjct: 88 KYVELAPVYGEDGDMIVVSRR--IPYDYLVIAIGSKSNDFNTKGVAENCIFLDNPSQAMR 145
Query: 227 VDRKLSEL--ERRNFERLEEKG-------IVQAINVETTICPTGTPGNREAALKVLSARK 277
K+ EL + R + L++ G +V+ ++ I G G E + ++ +A +
Sbjct: 146 FQHKMLELFLKFRENQALDDIGEEESKQQLVEDGHINIAIVGAGATG-VELSAELYNAAE 204
Query: 278 VQLVLGYFVRCIRRVGEFEAS---VKQPESG-----AIP------------NIAADKNSD 317
GY G+ ++S V E+G A+P + D ++
Sbjct: 205 HLSSYGY--------GQIDSSRLKVTLVEAGPRILPALPERISNDATEELRKLGVDVKTN 256
Query: 318 KYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 376
I+E + + + Q+ ADL++W+ G + L +N Q +T
Sbjct: 257 TMIVEAKKKQLVTKDGQLIPADLIVWSAGIR-----TSAITKNFDGLEINRINQLVVKKT 311
Query: 377 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 436
L IFA+GD L G+P+P AQ A Q A N+ A +++PL F + +
Sbjct: 312 LQTTNDSTIFAMGDCCFLMQDDGKPVPPKAQAAHQMASLCAKNMVALFDNKPLKDFEYND 371
Query: 437 LGEMMILGRNDA--AVSPSFVEG--VTLDGPI 464
G ++ L A A+S G +T++G I
Sbjct: 372 KGSLVSLSEFTAFGALSGKITGGSSMTIEGKI 403
>gi|261313448|ref|ZP_05952645.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella pinnipedialis M163/99/10]
gi|261302474|gb|EEY05971.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella pinnipedialis M163/99/10]
Length = 424
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 115/430 (26%), Positives = 179/430 (41%), Gaps = 53/430 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ++G GFGGL L D K ++ L+DQ +F+P+LY++ + + EI
Sbjct: 7 PHIVVVGAGFGGLQLIRDL------DGAKVRITLIDQRNHHLFQPLLYQVATTILSTSEI 60
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A +L F+DR ++ + LG + T +V LE G V YD LVL+
Sbjct: 61 AWPIRNL--------FRDRAEV---TTLLGTVIDVD-TARKSVFLEKGDEVSYDMLVLAT 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFERLEEKGIVQAINVETTIC 258
GA + A LEDA + R L ER ER + QA+ + +I
Sbjct: 109 GARHAYFGNDQWEKLAPGLKALEDATTIRRRLLLAFERA--EREPDMARRQAL-LTFSIV 165
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP---NI 310
G G A + AR+ R + +A V E+G A P +
Sbjct: 166 GGGPTGVELAGIIAELARRT------LWPEFRNIDTRQARVLLLEAGPRILSAFPEDLSA 219
Query: 311 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE----PPNNRLHDLPLN 366
A + +K +E++ I I + + TVG + + H L L+
Sbjct: 220 YARRALEKLGVEVRLGIP--VKDITQEGV---TVGDEFIPCHTTVWAAGVAASPAALWLD 274
Query: 367 AR----GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
A G+ + L V GH IFA+GD++ + GRP+P A A QQ + + +
Sbjct: 275 AESDRAGRVKVLSNLSVPGHEDIFAIGDTAWVEGDDGRPVPGIAPAAKQQGAYVAKVIRS 334
Query: 423 AI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
+ N P LPFR+++ G + +G+ A V + L G I +A++ L
Sbjct: 335 RVENKTPPLPFRYKHQGNLATIGKGAAVVDMGRIR---LKGTIAWWFWGIAHIFFLIGTR 391
Query: 482 HRLKVGVSWL 491
R + SWL
Sbjct: 392 SRAAMAWSWL 401
>gi|224476039|ref|YP_002633645.1| putative NADH dehydrogenase [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420646|emb|CAL27460.1| putative NADH dehydrogenase [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 401
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/395 (23%), Positives = 162/395 (41%), Gaps = 67/395 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ +LG G+ GL T +L+ ++ D+ ++ L+D+ + +L+E +G V+ +I
Sbjct: 6 KVIVLGAGYAGLQTVTKLQKILPADE--AEITLIDKDDYHYESVLLHEASAGTVNYEDII 63
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
++ V+F K V + P H V +G YD LV+ LG
Sbjct: 64 YPIESVINQERVKFLKGEVVKVDP-------------HAKVVETNNGRF-NYDILVVGLG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
+ + G + AF ++ A ++ R + E + N+ +EK + T
Sbjct: 110 FVSETFGIKGMLDHAFQIENIQTARKLSRHI-EDKFANYASSKEKDPKDLAFLVGGAGFT 168
Query: 261 GTP--GNREAALKVLSAR------KVQL----------------VLGYFVRCIRRVGEFE 296
G G A + LS + KV++ ++ Y V + G E
Sbjct: 169 GIEFLGELTARVDELSNKYGVDRDKVKITCVEAAPTMLPMFDDELVNYAVNYLEERG-VE 227
Query: 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 356
+ P GA N +++++ G E Q EA+ +WT G +
Sbjct: 228 FKIGTPIVGA--------NEKGFLVKV-----GDEEQQLEANTSVWTAGVR--------- 265
Query: 357 NNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQA 413
+++ D RG+ ++ L G F +GD SA + + RPLP TAQ+A QQ
Sbjct: 266 GSKIMDNSFEGVKRGRLVVNQDLTAPGFNETFVIGDVSAYIPEGEERPLPTTAQIAMQQG 325
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ N+ +N +P PF + N G + LG +D
Sbjct: 326 ESVAKNVKNILNGQPKEPFNYVNRGTVCSLGAHDG 360
>gi|218288428|ref|ZP_03492718.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Alicyclobacillus acidocaldarius LAA1]
gi|218241401|gb|EED08575.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Alicyclobacillus acidocaldarius LAA1]
Length = 393
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 144/355 (40%), Gaps = 62/355 (17%)
Query: 113 LVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNG 172
LV++ FK +L+E+ D A L + VK L SD L
Sbjct: 29 LVNREPYHTFKTLLHEVAGARHDPHTYALSLEGLFHRKTSEIVIAEVKNLRLSDKL---- 84
Query: 173 PMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS 232
V + G IVEY+ L+++LG+ +PG AE F D+ R +L
Sbjct: 85 ---------VETDRG-IVEYETLIVALGSRTATFGLPGVAEHTFRL----DSLRAAMELH 130
Query: 233 ELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV---LGYFVRCI 289
R ER ++ G ++++ + G G V+L+ + + +
Sbjct: 131 HHVERELERYQQTG--NPVHLKVLVAGGGLTG-------------VELMGEWADWLPKRL 175
Query: 290 RRVG----EFEASVKQPESGAIPNI-------AADKNSDKYI-LELQPAIKGLESQIF-- 335
R G + + + +P++ A +K ++ + L L + G E Q +
Sbjct: 176 REEGLPLTDLHLGLIHAHAEILPDVDHQLRAVAQEKLVERGVELILNERVAGAEPQAYAL 235
Query: 336 ------EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 389
EA ++WT G + P + LP++AR + + DE L KG ++ +G
Sbjct: 236 ASGKKLEAGTLVWTGGVEA------PALLKEAGLPVDARNRVDVDEFLMAKGVSDVYVIG 289
Query: 390 DSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
D + + G LP T QVA Q G NL +DRP LPF +++ G + LG
Sbjct: 290 DCARFANVHGNALPPTGQVAEQMGHHLGANLVRRAHDRPPLPFVYRDHGMVASLG 344
>gi|114328316|ref|YP_745473.1| NADH dehydrogenase [Granulibacter bethesdensis CGDNIH1]
gi|114316490|gb|ABI62550.1| NADH dehydrogenase [Granulibacter bethesdensis CGDNIH1]
Length = 437
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 155/363 (42%), Gaps = 46/363 (12%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
K V L+D++ V+KP+L+ + +G +D E + LA F R+ +
Sbjct: 32 KAHVTLIDRARAHVWKPLLHIIAAGSMDPGE---HQVNYLAQAKWNHFDFRL-----GEM 83
Query: 168 LGVNGPMACTHGGTVLLESGLIVE------YDWLVLSLGAEPKLDVVPGAAEFAFPFSTL 221
+G++ H G + E G + YD LV+ LG+ PGAA++A P T
Sbjct: 84 IGLDRQAQLVHLGEMRDEEGRQITAPRSIPYDTLVICLGSVTNDFGTPGAAQYAVPLDTP 143
Query: 222 EDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV 281
+A R +R+L R + G + I G G+ AA +AR+ +
Sbjct: 144 TEAVRFNRRLLNACIRA---QSQDGPRHPGQLHVAIIGAGATGSELAAELHRTARQ---M 197
Query: 282 LGYFVRCI-----RRVGEFEASVK----QPESGAIPN------IAADKNSDKYILELQPA 326
+ Y + I R+ EA+ + PE ++ + + ++ + E++
Sbjct: 198 VAYGLDRIDPQRDMRIMLIEAASRILPALPERMSVATEELLKELGVEVMTNCRVAEVRED 257
Query: 327 IKGLESQIF-EADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHP 383
L S F A+LV+W+ G V+ P+ + L N Q ++TL P
Sbjct: 258 GVQLSSGTFLPAELVVWSAG-------VKAPDFLRDIDGLETNRANQLVVEQTLQTTRDP 310
Query: 384 RIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMI 442
IFA GD +A D +GR +P AQ A QQA + + L P+ +++ G ++
Sbjct: 311 NIFAFGDCAACPLDETGRLVPPRAQAAHQQASHMVGQIKRRMAGEALKPYHYRDFGSLVS 370
Query: 443 LGR 445
LGR
Sbjct: 371 LGR 373
>gi|312196480|ref|YP_004016541.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Frankia
sp. EuI1c]
gi|311227816|gb|ADP80671.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Frankia
sp. EuI1c]
Length = 430
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/395 (26%), Positives = 168/395 (42%), Gaps = 64/395 (16%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI +LGGG+ GL TA+R+ + QV L++ S+RFV + L++L +G+ E+A
Sbjct: 15 RILVLGGGYTGLMTAVRVARR--TRRQGGQVTLLNPSDRFVERLRLHQLATGQ----ELA 68
Query: 141 P-RFADLLANTGVQFFKDRVKLLCPSDH-LGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
R LLA TGV F + + + H + V GP G YD LV +
Sbjct: 69 DLRIPRLLAGTGVTFVRGAAVRIDRAAHTVDVEGPDGPGQLG-----------YDLLVYA 117
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG+ L VPGAA+ A+ + A R+ +L+EL L + + + ET
Sbjct: 118 LGSAADLGSVPGAADHAYTLNGPAAAGRLADRLAELA------LPGEDVT--VGAETPAG 169
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGE----FEA------SVKQPE--SGA 306
PG +A +V ++G + I E F A S QP GA
Sbjct: 170 AETPPGQATSAGRV-------AIVGAGLTGIEMAAEIAETFPALRVVLLSRDQPGLMMGA 222
Query: 307 IPNIAADKNSDKYILELQPAI---KGLESQI--------FEADLVLWTVGSKPLLPHVEP 355
+ D+ +E++ + K L + AD V+WT G + P
Sbjct: 223 AARAYLYRALDRLGIEVRAGVDVTKVLPGAVEVDGDLAPMAADAVVWTTGFR------AP 276
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
L ++ G+ D+ L + P ++ +GD++A+R G L + Q A
Sbjct: 277 ALAAEAGLAVDGHGRVVVDQALRSETDPAVYVIGDAAAVRQPWGT-LHGSCQSGLPTAAH 335
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
A ++ + R PFRF + + + LGR DA +
Sbjct: 336 AADSIGRQLRGRAPRPFRFGYIHQPVSLGRRDAVI 370
>gi|118577016|ref|YP_876759.1| NADH dehydrogenase, FAD-containing subunit [Cenarchaeum symbiosum
A]
gi|118195537|gb|ABK78455.1| NADH dehydrogenase, FAD-containing subunit [Cenarchaeum symbiosum
A]
Length = 417
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 99/417 (23%), Positives = 169/417 (40%), Gaps = 69/417 (16%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
D ++ +V + +F PML ++ SG ++ I + T F++ RVK + P
Sbjct: 4 DADVEITMVSEDNFLLFTPMLPQVASGMIETRHIVMPIRTICDRT--TFYEGRVKNIDP- 60
Query: 166 DHLGVNGPMACTHGGTVLL-----ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFST 220
+G +V L + G+ + YD+LVL+LG++ + + A+ T
Sbjct: 61 ------------YGKSVDLWGTREKRGISITYDFLVLALGSQTNFFGLSDVEKNAYTMKT 108
Query: 221 LEDACRVDRKLSELERRNFERLEEKG--IVQAINVETTICPTGTPGNREAALKV---LSA 275
L DA + ++ ++ E+ E + I++ + I G G A + L A
Sbjct: 109 LGDAVVLRNRVVDM----LEQAENETDPILRGTLLTFVIVGGGFAGIETAGEILDLLLDA 164
Query: 276 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI-------AADKNSDKYI-LELQPAI 327
RK IR+ +F V + +P A +K +K + + L+ A+
Sbjct: 165 RK-------HYPNIRK-DDFSVVVLEALGAILPGFDEKLAKFAHEKLLEKGMDIRLRTAV 216
Query: 328 KGLES-------------QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD 374
G + + ++WT G V P N L +G+ D
Sbjct: 217 SGFDGTEVSFKGLDGGGEDAIRTNTLVWTAG-------VTPVNTIKRSLFKTEKGKIVVD 269
Query: 375 ETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 433
L V P +FA+GD + D SGRP P TAQ+A Q + NL A I + F
Sbjct: 270 GFLAVPEFPGVFAVGDCALSVDPGSGRPFPPTAQLAEAQGETVAHNLQALIRGGGMKAFT 329
Query: 434 FQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
F+ G+M ++G+ S G + G + YL ++P E R++V + W
Sbjct: 330 FKQKGQMAVIGKRTGIAS---FLGANIAGFWAWFLWRNVYLSKIPRMEKRIRVLLDW 383
>gi|261867944|ref|YP_003255866.1| Ndh protein [Aggregatibacter actinomycetemcomitans D11S-1]
gi|415768831|ref|ZP_11483985.1| Ndh protein [Aggregatibacter actinomycetemcomitans D17P-2]
gi|416107669|ref|ZP_11590636.1| Ndh protein [Aggregatibacter actinomycetemcomitans serotype c str.
SCC2302]
gi|444337241|ref|ZP_21151246.1| Ndh protein [Aggregatibacter actinomycetemcomitans serotype b str.
SCC4092]
gi|444346571|ref|ZP_21154535.1| Ndh protein [Aggregatibacter actinomycetemcomitans serotype c str.
AAS4A]
gi|261413276|gb|ACX82647.1| Ndh protein [Aggregatibacter actinomycetemcomitans D11S-1]
gi|348005218|gb|EGY45707.1| Ndh protein [Aggregatibacter actinomycetemcomitans serotype c str.
SCC2302]
gi|348657677|gb|EGY75263.1| Ndh protein [Aggregatibacter actinomycetemcomitans D17P-2]
gi|443541389|gb|ELT51816.1| Ndh protein [Aggregatibacter actinomycetemcomitans serotype c str.
AAS4A]
gi|443547308|gb|ELT56831.1| Ndh protein [Aggregatibacter actinomycetemcomitans serotype b str.
SCC4092]
Length = 445
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 163/392 (41%), Gaps = 50/392 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ V L+D+++ ++KP+L+EL +G +D A + N F + + L
Sbjct: 28 KRANVTLIDRNQTHLWKPLLHELATGALDDGVEALSYRAHACNHHFNFEQGSMVGLNRQH 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G +++ + YD+LV+++G++ G AE A R
Sbjct: 88 KYVELAPVYGEDGDMIVVSRR--IPYDYLVIAIGSKSNDFNTKGVAENCIFLDNPSQAMR 145
Query: 227 VDRKLSEL--ERRNFERLEEKG-------IVQAINVETTICPTGTPGNREAALKVLSARK 277
K+ EL + R + L++ G +V+ ++ I G G E + ++ +A +
Sbjct: 146 FQHKMLELFLKFRENQALDDIGEEESKQQLVEDGHINIAIVGAGATG-VELSAELYNAAE 204
Query: 278 VQLVLGYFVRCIRRVGEFEAS---VKQPESG-----AIP------------NIAADKNSD 317
GY G+ ++S V E+G A+P + D ++
Sbjct: 205 HLSSYGY--------GQIDSSRLKVTLVEAGPRILPALPERISNDATEELRKLGVDVKTN 256
Query: 318 KYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 376
I+E + + + Q+ ADL++W+ G + L +N Q +T
Sbjct: 257 TMIVEAKKKQLVTKDGQLIPADLIVWSAGIR-----TSAITKNFDGLEINRINQLVVKKT 311
Query: 377 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 436
L IFA+GD L G+P+P AQ A Q A N+ A +++PL F + +
Sbjct: 312 LQTTNDSTIFAMGDCCFLMQDDGKPVPPKAQAAHQMASLCAKNMVALFDNKPLKDFEYND 371
Query: 437 LGEMMILGRNDA--AVSPSFVEG--VTLDGPI 464
G ++ L A A+S G +T++G I
Sbjct: 372 KGSLVSLSEFTAFGALSGKITGGSSMTIEGKI 403
>gi|421897738|ref|ZP_16328105.1| nadh dehydrogenase, membrane flavoprotein fad nad ubiquinone
electron transport [Ralstonia solanacearum MolK2]
gi|206588944|emb|CAQ35906.1| nadh dehydrogenase, membrane flavoprotein fad nad ubiquinone
electron transport [Ralstonia solanacearum MolK2]
Length = 441
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/411 (24%), Positives = 170/411 (41%), Gaps = 39/411 (9%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL-CPS 165
+ +++LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARIVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKSLDRAA 96
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ V+G + G VL E + YD LVL++G+ VPG AE A A
Sbjct: 97 KTITVSGCVDAD-GTEVLPERA--IAYDMLVLAIGSVTHFFGVPGTAEHAIALDAASQAE 153
Query: 226 RVDRKLSELERRNFERLEEKGIVQA-INVETTICPTGTPG--------NREAALKVLSAR 276
R RKL R + G+ A V+ I G G N L
Sbjct: 154 RFRRKLIAACMR-----AQNGVGDARAQVDIAIVGAGATGVELSAELRNTAHVLAAYGLH 208
Query: 277 KVQLVLGYFVRCI----RRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLE 331
K+ + + I R + V + + + D + + ++E+ A+K
Sbjct: 209 KLDPLRDIRIHLIEGSPRILAALSERVSAETTKLLHKLNVDVITGERVVEVTDSAVKTGS 268
Query: 332 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD- 390
+ ADL +W G + P LPL+ GQ TL V+G I+A GD
Sbjct: 269 GKSIPADLTVWAAGIRA------PAILGELGLPLSRLGQVVVSRTLQVEGDDSIYAFGDC 322
Query: 391 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
+S + +P AQ A QQA + + + +P+ PF F++LG ++ LG A
Sbjct: 323 ASCPWPEASTSVPPRAQAAHQQATYLYKAMRRRLQGKPVEPFGFKDLGSLVSLGHFSAV- 381
Query: 451 SPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLTKSAIDSV 499
G + G IG + + RL T +R+ V + + A+D+V
Sbjct: 382 ------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFLRMALDTV 426
>gi|443288605|ref|ZP_21027699.1| Dehydrogenase [Micromonospora lupini str. Lupac 08]
gi|385888006|emb|CCH15773.1| Dehydrogenase [Micromonospora lupini str. Lupac 08]
Length = 432
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 109/439 (24%), Positives = 170/439 (38%), Gaps = 67/439 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI I+G GF G + A RL + V+LV+ ++ F++ P+L E+ G +D
Sbjct: 3 RPRIVIVGAGFAGFHAARRLTRVA---RGAADVVLVNPTDYFLYLPLLPEVSGGVLDPRR 59
Query: 139 IAPRFADLLANT-----GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ AD L V + + +D G G +A Y
Sbjct: 60 VTVPLADTLPGVRVILGAVDGIDTDGRTVSYADPEGRPGRLA----------------YH 103
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINV 253
LVL+ G+ KL +PG A+ A F + +A + +L +++ + + +
Sbjct: 104 RLVLAAGSVNKLLPIPGVADHAHGFRGIPEALHLREQL--IQQIEMADATDDPVEREARC 161
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS--VKQPESGAIPNIA 311
+ G G AA + QL VR R+ + +P +
Sbjct: 162 TFVVVGAGYTGTEVAA-------QGQLFTDQIVRHHPRLSGIRPRWLLLDTADRVLPGL- 213
Query: 312 ADKNS----------------DKYILELQPAIKGLESQIFEADLVL-WTVGSKPLLPHVE 354
AD+ S ++E L F A L W VG +P
Sbjct: 214 ADRMSRVAGRVLGERGIEVCLGTSVVEATADGVHLSDGRFVASRTLVWCVGVRP------ 267
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPATAQVAFQQ 412
P LP RG+ DE L V GHP I A GD++A+ D + G P TAQ A +Q
Sbjct: 268 DPLVGATGLP-TTRGRITVDEHLAVPGHPEILACGDAAAVPDPARPGEITPMTAQHAVRQ 326
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
A N+ A+ P+R ++LG ++ LG A P V L G + +
Sbjct: 327 GRLAADNIAASYGVGRRRPYRHRDLGFVVDLGGWQATADPLHVP---LSGLPARAVARGY 383
Query: 473 YLIRLPTDEHRLKVGVSWL 491
+L+ LP + R + WL
Sbjct: 384 HLLSLPAN--RARTAADWL 400
>gi|237753208|ref|ZP_04583688.1| NADH dehydrogenase Ndh [Helicobacter winghamensis ATCC BAA-430]
gi|229375475|gb|EEO25566.1| NADH dehydrogenase Ndh [Helicobacter winghamensis ATCC BAA-430]
Length = 403
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 148/354 (41%), Gaps = 46/354 (12%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
+ L+ + + +L+++ G + A + + +L V F KD++K LCP ++ +
Sbjct: 33 ITLISKHDYHYQTTLLHKVAIGTLSARKARIYYRKVLDLNKVHFIKDKIKQLCPKENKVI 92
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
+GG YD LV++LG +P + G ++A+ S+L A ++D+
Sbjct: 93 G------NGGEYF--------YDILVVALGFKPNNFGIKGVEKYAYTLSSLNSALKLDK- 137
Query: 231 LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR--- 287
+E + E + K +++T +C TG G AA +++ L+ G R
Sbjct: 138 --NIENKFKEFVHTK---NPKDLQTIVCGTGFTGIEFAAELATQLQELCLICGINQRIPK 192
Query: 288 --CIRRVGE----FEASVKQPESGAIPNIAADKNSDKYILELQPA----IKGLESQIFEA 337
CI R F S+ + + N+ + S I E++ + E+Q
Sbjct: 193 VTCIGRSQHILPVFSDSLAKIAESKLKNLGVEILSSADIQEIKEGEVIIKREGETQSIYG 252
Query: 338 DLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 395
+ ++W+ G K ++ E PN G+ + L K I+ +GD +
Sbjct: 253 NTIIWSAGVKGSEIVEQSEIPNK---------NGRIAVNAQLQCKEFENIYVVGDCAIAT 303
Query: 396 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDA 448
D P TAQ+A Q D+ L A + ++ F+F + G + +G D
Sbjct: 304 DKDAIHAP-TAQLAAQMGDYVAELLCAKLENKSFDKVFKFNHRGTVCSIGHTDG 356
>gi|408377227|ref|ZP_11174830.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Agrobacterium albertimagni AOL15]
gi|407749186|gb|EKF60699.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Agrobacterium albertimagni AOL15]
Length = 427
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 99/432 (22%), Positives = 173/432 (40%), Gaps = 55/432 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PR+ I+G GFGGL A L D + V ++D+ +F+P+LY++ + + +
Sbjct: 10 RPRVVIVGAGFGGLACAKALA------DTEVDVTVIDRRNHNLFQPLLYQVATAALSPAD 63
Query: 139 IA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I+ P L + + V + P+ TV L G + YD LVL
Sbjct: 64 ISEPIRRTLGRSDNIHVLMGEVVSIDPNAR-------------TVSLADGAAIPYDRLVL 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL---SELERRNFERLEEKGIVQAINVE 254
+ G++ + A ++ +A ++ +L E R+ + E++ ++
Sbjct: 111 ATGSKYNYFGNEDWQKHAPGLKSIHEARQIRHRLLLAFEQAERSQDEAEQRRLL------ 164
Query: 255 TTICPTGTPGNREAA--------------LKVLSARKVQLVLGYFVRCIRRVGEFEASVK 300
T++ G P E A + L ++ +VL R + F ++
Sbjct: 165 TSVVIGGGPTGVEMAGAISELGRFMIERDFRTLRPEQLHVVL--VEAGPRILATFPENLS 222
Query: 301 QPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRL 360
+ + NI D + + ++ ++ A ++W G K P + L
Sbjct: 223 NYAADYLRNIGVDIRLNTPVEDVTAEGVQVKDGFLPASCIVWGAGVK-----ASPAADWL 277
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 420
P G+ L V G ++A+GD++ D G LPA AQVA QQ F G L
Sbjct: 278 GISP-GPGGRLPVARDLSVDGLEGVYAIGDTALALDEDGEALPALAQVAKQQGTFLGKAL 336
Query: 421 WAAINDRPLLP-FRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+++ +P FRF N G ++GRN A + L G + ++ L
Sbjct: 337 KSSLLKGAAVPNFRFHNRGNTAVIGRNAAIFDFGTWQ---LKGRFAWLLWAIVHVYLLVN 393
Query: 480 DEHRLKVGVSWL 491
E RL V V W+
Sbjct: 394 FEKRLLVSVQWI 405
>gi|423484868|ref|ZP_17461557.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG6X1-2]
gi|401136719|gb|EJQ44305.1| NADH dehydrogenase-like protein yjlD [Bacillus cereus BAG6X1-2]
Length = 392
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 158/392 (40%), Gaps = 60/392 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GGL AL + + + QV +++Q L+ L +G V +A
Sbjct: 4 QIVILGAGYGGLLAALNVRK--YYSKSEAQVTVINQYPTHQIITELHRLAAGNVAEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L KD + + V+ GGT L YD LV++LG
Sbjct: 62 MPLTKLFKG------KDIDLKIATVESFSVDSKEIKLAGGTTL-------SYDALVVALG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
++ +PG E + L+ A ++ +E R E + K A V T
Sbjct: 109 SKTAYFGIPGLEENSM---VLKSAADANKIYKHVEDRIREYAKTKNEADATIVIGGGGLT 165
Query: 261 GTPGNRE--------AALKVLSARKVQLVL---GYFVRCI-------RRVGEFEASVKQP 302
G E A ++ ++V+L+L G + + R EA
Sbjct: 166 GVELVGELADIMPKLAKSHGVNPKEVKLLLVEAGPKILPVLPDHLIERATASLEARGVTF 225
Query: 303 ESG-AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNR 359
+G + N+A ++ ++L+ + Q A+ +WT G PL+
Sbjct: 226 LTGLPVTNVAGNE------IDLK------DGQKIVANTFVWTGGVQGNPLIGE------- 266
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
L +N RG+A D L H +F GDS+ + GRP P TAQ+A+Q + G+N
Sbjct: 267 -SGLEVN-RGRATVDAHLQSTSHKDVFVAGDSAVVFAPDGRPYPPTAQIAWQMGELIGYN 324
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
L+AA+ + F N G + LGR DA +
Sbjct: 325 LYAALEGKAFEEFAPINSGTLASLGRKDAVAT 356
>gi|420247666|ref|ZP_14751061.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. BT03]
gi|398070560|gb|EJL61854.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. BT03]
Length = 448
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 93/365 (25%), Positives = 155/365 (42%), Gaps = 31/365 (8%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
+ + QV LVD++ ++KP+L+E+ +G +D + +A G +F + + L +
Sbjct: 32 EPRAQVTLVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELVALDRT 91
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
G + G +L E ++EYD LV+++G+ V GA E++ T+ A
Sbjct: 92 AKSIRLGRVLDDDGAELLPER--VLEYDTLVIAIGSTTHFFGVKGAPEYSLALDTVHQAE 149
Query: 226 RVDRKL----SELERRNFERLEEKGIVQAIN--VETTICPTGTPGNREAA-----LKVLS 274
R ++L E + E +E + ++ I G G +A +VLS
Sbjct: 150 RFRKRLIAACMRAEHQAHEPVETNPGTTSTEPRIQVAIVGGGATGVELSAELRNTAQVLS 209
Query: 275 A---------RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 325
A V +VL R + + V S + + + + E+ P
Sbjct: 210 AYGLHKLDPRHDVGIVL--IEAGPRILPALQERVSTATSELLQKLGVKLMVGETVAEVAP 267
Query: 326 A-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPR 384
++ + ADL +W G K P V ++L LP+N GQ E TL
Sbjct: 268 GVVRTASGKTVRADLTVWAAGIKA--PAVL---SQLDGLPVNRLGQLEVRPTLQTMIDDN 322
Query: 385 IFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMIL 443
+FALGD +A + R +P AQ A QQA F L + RPL F +++ G ++ L
Sbjct: 323 VFALGDCAACAWPGNERNVPPRAQAAHQQASFLLRALGNRLEGRPLPEFTYRDFGSLVSL 382
Query: 444 GRNDA 448
G A
Sbjct: 383 GHFSA 387
>gi|169826361|ref|YP_001696519.1| NADH dehydrogenase-like protein [Lysinibacillus sphaericus C3-41]
gi|168990849|gb|ACA38389.1| NADH dehydrogenase-like protein [Lysinibacillus sphaericus C3-41]
Length = 394
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 94/404 (23%), Positives = 158/404 (39%), Gaps = 82/404 (20%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG G+ G+ TAL + D+ K + +V+Q L+ L G + +A
Sbjct: 4 EIVILGAGYAGVLTALTARKYLSADEAK--ITVVNQFPTHQIITELHRLAGGTIAEGAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ + +V + V L++G + YD LV+SLG
Sbjct: 62 LPLKKIFKGLDIDLHIAKVTKFNVDNK-------------KVDLDNGYTLTYDTLVVSLG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR----------------------- 237
++ +PG E + ++ DA ++++ + + +
Sbjct: 109 SQTGFFGIPGLEENSMVLKSVNDANKINKHIEDRIKAYAQSKDEADATIVIGGGGLTGVE 168
Query: 238 -------NFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 290
NF ++ K V +++ + EA K+L L+ +
Sbjct: 169 LVGEIVDNFPKIAAKHGVNFADLKIKLV--------EAGPKILPVLPDTLIQRATESLTK 220
Query: 291 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350
R EF P +G N+ + K+ + + A+ ++WT G PL
Sbjct: 221 RGVEFITGT--PVTGVDGNVISLKDREPIV----------------ANTLVWTGGVAPL- 261
Query: 351 PHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPA-TAQ 407
P V L A RG+A +E L H +F +GD+S AL GRPL A TAQ
Sbjct: 262 PIVGESG-------LAADRGKATINEFLQSTSHEDVFVIGDASVALPADGGRPLYAPTAQ 314
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
VA+Q + AG+N++A ++ + F N G + LGR DA +
Sbjct: 315 VAWQMGELAGYNVFAQYKNQEMKSFSAVNSGTLASLGRKDAVAT 358
>gi|172062279|ref|YP_001809930.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia ambifaria MC40-6]
gi|171994796|gb|ACB65714.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia ambifaria MC40-6]
Length = 452
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 161/388 (41%), Gaps = 28/388 (7%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+GGG GGL A RL + + + V+LVD+ +KP+L+E SG D
Sbjct: 15 RVPRIVIVGGGAGGLQLATRLGDTLGRRGQA-DVVLVDRYPTHFWKPLLHEAASGHRDPA 73
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A G +F + + + + + G +L L YD LVL
Sbjct: 74 SHTIEYAAQAKRHGFRFVQGALHRVDRAARTATIAAVQDADGTEILPPRAL--GYDDLVL 131
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
++G+ VPGAA A P L+ A RK + E++ A + +
Sbjct: 132 AVGSVTNFFNVPGAARHALPLENLDQAEDFRRKFLAACTKANHLAEQQPAQPAAPICINV 191
Query: 258 CPTGTPGN------REAALKVLSARKVQLVLG--YFVRCI----RRVGEFEASVKQPESG 305
G G R A ++ + R LV +R I R + +A +
Sbjct: 192 IGAGATGVELAAALRHAIQQLTTYRFKALVSARDVHIRLIEGGPRILPALDARLSARMHA 251
Query: 306 AIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHD 362
+ + D +D + E+ A+ + +D+ +W G V P L D
Sbjct: 252 QLRTLNVDVLTDTRVAEVGADAVTTATGERLASDITIWAAG-------VAGPAILRELGD 304
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSAL--RDSSGRPLPATAQVAFQQADFAGWNL 420
+ LN Q +TL P ++A GD +A D+SG LP AQVA QQA + G L
Sbjct: 305 IALNRSNQVIVSDTLQTPDDPHVYAFGDCAACPSADASGF-LPPRAQVAHQQAVYLGEAL 363
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ +P+ F F++ G ++ LG+ A
Sbjct: 364 ARRLAGKPVAGFTFRDAGTVVSLGQAGA 391
>gi|403385468|ref|ZP_10927525.1| NADH dehydrogenase, FAD-containing subunit [Kurthia sp. JC30]
Length = 401
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/422 (25%), Positives = 174/422 (41%), Gaps = 58/422 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I I+G G+GGL + + L+ + D + L+++++ L+E +G + A +
Sbjct: 3 KTKIVIVGAGYGGLASVVTLQRKIALDTVD--ITLINKNDYHYETTWLHEAAAGAISAND 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ LL GV+F + V + L V T GT EYD+L++
Sbjct: 61 VCYEIEPLLKQ-GVRFVQATV------ETLDVEQQQVLTSHGTY--------EYDYLIVG 105
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV----DRKLSELERRNFERLEEKGIVQAINVE 254
LG E + +PG + A S A +V + + + E+ + R E+ IV
Sbjct: 106 LGFEAQHYNIPGIEQHALTISNALAASKVWAHVNAQFARYEQ--YGRPEDATIVVGGAGF 163
Query: 255 TTICPTGT-----PGNREA------ALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPE 303
T I GT P A L+V+ +L F + + + + + E
Sbjct: 164 TGIEFLGTFVDQLPKLAAAYHIPLETLRVICVESATTILPDFPETLAQYAQQALTARGVE 223
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 363
+ A +DK I Q + ++WT G K VE + L
Sbjct: 224 W--MTQTAIIGCTDKGITVRQQQ----QESFIPTSTIIWTAGVKGS-SIVEASS-----L 271
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGWNLWA 422
P +A G+ + TL V+ +P +F +GD S + D +P P TAQ+A QQ + NL
Sbjct: 272 P-SAGGRVQVLPTLNVEQYPNVFVVGDCSIVIDRYEQKPYPPTAQLAMQQGETIALNLQR 330
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 482
D P++PF G + LG+ D G+ L ++ RK A L ++ D H
Sbjct: 331 LFADEPMVPFMPNLKGSVCSLGKGD---------GIALVKGREYTGRKAAVLKKM-IDNH 380
Query: 483 RL 484
L
Sbjct: 381 AL 382
>gi|359683573|ref|ZP_09253574.1| NADH dehydrogenase [Leptospira santarosai str. 2000030832]
gi|421113002|ref|ZP_15573457.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. JET]
gi|422003522|ref|ZP_16350751.1| NADH dehydrogenase [Leptospira santarosai serovar Shermani str. LT
821]
gi|410801573|gb|EKS07736.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. JET]
gi|417257741|gb|EKT87137.1| NADH dehydrogenase [Leptospira santarosai serovar Shermani str. LT
821]
Length = 422
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/434 (19%), Positives = 171/434 (39%), Gaps = 54/434 (12%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +K ++ ++G GFGGL +L + ++ ++D+ +F+P+LY++ + +
Sbjct: 3 ESRKRKVVVIGAGFGGLQAIKKLSR-----NNDLEITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + V ++ + YD+L
Sbjct: 58 PADIAIPIRSLVGE------RSNVTVVLGE-------ATKVDLAAKTVYYQNTSTNYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG---IVQAIN 252
+LS GA ++ L+DA ++ KL +FE+ E G +V+A+
Sbjct: 105 ILSAGARSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKAL- 159
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYF---------VRCI----RRVGEFEASV 299
+ G P E A + Q++ F + I R + F+ S+
Sbjct: 160 -LNYVIIGGGPTGVELAGSIAELSH-QIIRDEFHTIDPALSKITLIEAAPRLLTTFDVSL 217
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
+ + + + + ++++ LE ++ V+W G + N+
Sbjct: 218 GEFTKKRLESRGVEVLTGARVIDIDERGVQLEGKMIPTQTVIWAAGVQA--------NSI 269
Query: 360 LHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
L L+ G+ DE ++GHP +F +GD + RPLP + VA QQ +
Sbjct: 270 ASTLGATLDRSGRVSVDEFCNIEGHPEVFVIGDIANYSKGLERPLPGVSPVAMQQGRYVA 329
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
+ + ++ PFR+ + G M +GR DA + + G G A +L
Sbjct: 330 ALIQGDLKNKKRKPFRYVDKGSMATIGRTDAVAQMGVLR---MKGLFGWFAWLFVHLFYQ 386
Query: 478 PTDEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 387 VGFKNKITILITWV 400
>gi|322703387|gb|EFY94997.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Metarhizium anisopliae ARSEF 23]
Length = 414
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/411 (24%), Positives = 163/411 (39%), Gaps = 60/411 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQD--DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
RI I+G GF G+Y+AL L+ Q+ D+ + +++ +P LYE +
Sbjct: 4 RIVIIGAGFAGMYSALAARRLISQNGRDQDIETVVIAPEPTLAVRPRLYE-----ANPAT 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A DL TGV+F + K + +GV GG +V+YD L+L
Sbjct: 59 MAAPLGDLFTATGVKFIQGVAKTIDTKMRQVGV-----VNTGG-----EAAVVDYDRLIL 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELER------RNFERLEEKGIVQAI 251
+ G++ ++ V G + +F L A +D+ L L R RN
Sbjct: 109 AAGSQLRVPSVDGLKQHSFNVDQLHSAIALDQHLHSLPRAPDCPARN------------- 155
Query: 252 NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIA 311
+C G G AA L AR ++ +LG V E ++ P G P
Sbjct: 156 --TVIVCGGGFTGIELAA--ELPAR-LRSILGQDTETRVIVVERNPTIG-PGLGPSPRPE 209
Query: 312 ADKNSDKYILELQ--PAIKGLES--------QIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
K D Y +EL+ A+ +++ + EA V+WT G + P +
Sbjct: 210 IQKALDGYGVELKLGVAVTSVDAGGVVTSTGERIEASTVVWTGGMVATGLTQQIPGKK-- 267
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQADFAGWNL 420
+ G+ DE L V +FA GD++ A+ D G + Q A +G N
Sbjct: 268 ----DGLGRLMVDENLRVAQTKHVFATGDAACAVTDEDGHTAMMSCQHALVLGRSSGHNA 323
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
A + P P+ + G + LG N A V+ + V G S ++
Sbjct: 324 AADLLGLPTRPYSQPDYGTCLDLGPNGAVVTAGWDRQVVFTGSQAKSVKQF 374
>gi|416051584|ref|ZP_11577632.1| Ndh protein [Aggregatibacter actinomycetemcomitans serotype e str.
SC1083]
gi|347993017|gb|EGY34394.1| Ndh protein [Aggregatibacter actinomycetemcomitans serotype e str.
SC1083]
Length = 445
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 162/392 (41%), Gaps = 50/392 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ V L+D+++ ++KP+L+EL +G +D A + N F + + L
Sbjct: 28 KRANVTLIDRNQTHLWKPLLHELATGALDDGVEALSYRAHACNHHFNFEQGSMVGLNRQH 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G +++ + YD+LV+++G++ G AE A R
Sbjct: 88 KYVELAPVYGEDGDMIVVSRR--IPYDYLVIAIGSKSNDFNTKGVAENCIFLDNPSQAMR 145
Query: 227 VDRKLSEL--ERRNFERLEEKG-------IVQAINVETTICPTGTPGNREAALKVLSARK 277
K+ EL + R + L++ G +V+ + I G G E + ++ +A +
Sbjct: 146 FQHKMLELFLKFRENQALDDIGEEESKQQLVEDGRINIAIVGAGATG-VELSAELYNAAE 204
Query: 278 VQLVLGYFVRCIRRVGEFEAS---VKQPESG-----AIP------------NIAADKNSD 317
GY G+ ++S V E+G A+P + D ++
Sbjct: 205 HLSSYGY--------GQIDSSRLKVTLVEAGPRILPALPERISNDATEELRKLGVDVKTN 256
Query: 318 KYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 376
I+E + + + Q+ ADL++W+ G + L +N Q +T
Sbjct: 257 TMIVEANKKQLVTKDGQLIAADLIVWSAGIR-----TSTITKNFDGLEINRINQLVVKKT 311
Query: 377 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 436
L IFA+GD L G+P+P AQ A Q A N+ A +++PL F + +
Sbjct: 312 LQTTNDSTIFAMGDCCFLMQDDGKPVPPKAQAAHQMASLCAKNMVALFDNKPLKDFEYND 371
Query: 437 LGEMMILGRNDA--AVSPSFVEG--VTLDGPI 464
G ++ L A A+S G +T++G I
Sbjct: 372 KGSLVSLSEFTAFGALSGKITGGSSMTIEGKI 403
>gi|334128805|ref|ZP_08502684.1| pyridine nucleotide-disulfide oxidoreductase [Centipeda periodontii
DSM 2778]
gi|333386217|gb|EGK57435.1| pyridine nucleotide-disulfide oxidoreductase [Centipeda periodontii
DSM 2778]
Length = 446
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 97/433 (22%), Positives = 177/433 (40%), Gaps = 46/433 (10%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ I I+G GFGG+ A L + +V LVD+ +F+P+LY++ + + + E
Sbjct: 22 QKHIVIVGAGFGGVRLAKELVK------ENVRVTLVDRHNYHLFQPLLYQVSTAVLSSSE 75
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA QFFK+ P+ + ++ + VL+ + YD+LVL+
Sbjct: 76 IA--------YPTRQFFKNN-----PNVNFYMSKALGVDQDRRVLITKHGEISYDYLVLA 122
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETTI 257
GA ++ TL++A + + E ER + + ++ + ++ I
Sbjct: 123 AGATTNFFGNKSVERNSYAMKTLQEAISLRGHIIHEFERASRKSGPDQREARQRHLNFVI 182
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV--GEFEASVKQPESGAIPNIAADKN 315
G G + A + ++ F + + E ++ + +P + D
Sbjct: 183 VGGGATG-------IEMAGALMELIDIFKKEFHTIDFSEVHVTLLEAMGSVLPMVPPDLQ 235
Query: 316 SDKY-ILELQPAIKGLESQIFEADLVLWTVGSKPLLPH---VEPPNNRLHDLPLNARGQA 371
+L + L + + E D T+ + ++P + R D + G+
Sbjct: 236 QHTIDVLRKKGVDVRLNTAVTEYDGNDLTLNNGEVIPTKTVIWAAGVRAQDFIKDCGGEV 295
Query: 372 E------TDETLCVKGHPRIFALGDSSALRDSS-GRPLPATAQVAFQQADFAGWNLWAAI 424
+ +E L VKG R+FA+GD + + RPLP A VA Q+A N+ A I
Sbjct: 296 DRAGRIIVEENLLVKGSDRVFAIGDCANFQHGDMQRPLPTVAPVATQEALQVKENIMALI 355
Query: 425 NDRP---LLPFRFQNLGEMMILGRNDAAVS---PSFVEGVTLDGPIGHSARKLAYLIRLP 478
+ L F +++LG M +G+ +A ++ P + + G A L +LIRL
Sbjct: 356 AGKTPDQLGKFVYKDLGAMATIGKGEAVMNGPMPVLGFNLKMSGFFAWFAWMLVHLIRLA 415
Query: 479 TDEHRLKVGVSWL 491
V V W+
Sbjct: 416 GKYADFTVSVKWI 428
>gi|350568703|ref|ZP_08937101.1| NADH dehydrogenase [Propionibacterium avidum ATCC 25577]
gi|348660946|gb|EGY77642.1| NADH dehydrogenase [Propionibacterium avidum ATCC 25577]
Length = 469
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 143/352 (40%), Gaps = 33/352 (9%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R A G + R +
Sbjct: 60 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAAQNGSRTHFRRASVTDVD----- 114
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DR 229
T V +++G + YD+L+LS G PGAAE ++ T + R D
Sbjct: 115 ------TENRIVNVDNGDPISYDYLILSQGVGANFFGTPGAAEHSYTIYTRASSLRARDA 168
Query: 230 KLSELERRNFERLEEKGIVQAINVETTICPTGTPGNRE-----AALKVLSARKVQLVLGY 284
+ LE + +R + ++ T + GT + A +S +V + L
Sbjct: 169 IFTYLEDLDTQRDKTFDVIIVGGGPTGVEMAGTLAEMKSIGIPAIFPDVSTDRVHVTLVE 228
Query: 285 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWT 343
+ + F+ +++ + D + I E+ + ++ + Q AD+V+W
Sbjct: 229 MADHL--LMPFDPALRHYTRRQLQKRGVDVRTKTAIAEVREDSVLLKDGQTLPADMVIWA 286
Query: 344 VGSKPLLPHVEPPNNRLHD--LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 401
G + + D G+ TD TL V GH RIFA+GD + ++ P
Sbjct: 287 AGVGA--------HKSVSDWGFEQGRGGRIATDGTLRVNGHDRIFAVGDGAI---NTEDP 335
Query: 402 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 453
P AQ A Q + + PL F +Q+ G M +GRN A V S
Sbjct: 336 KPQLAQPAIQGGECVARQIVHLELGEPLEKFEYQDKGTMATIGRNSAVVQLS 387
>gi|357058792|ref|ZP_09119638.1| hypothetical protein HMPREF9334_01355 [Selenomonas infelix ATCC
43532]
gi|355373138|gb|EHG20459.1| hypothetical protein HMPREF9334_01355 [Selenomonas infelix ATCC
43532]
Length = 428
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/434 (24%), Positives = 177/434 (40%), Gaps = 48/434 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ + I+G GFGG+ A L + +V LVD+ +F+P+LY++ + + A E
Sbjct: 4 QKHVVIVGAGFGGVRLAKELAK------ENVRVTLVDRHNYHLFQPLLYQVSTAVLSASE 57
Query: 139 IA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA P N V F+ +V GV+ V+ + G I YD+LVL
Sbjct: 58 IAYPTRQFFKNNQNVNFYMSKVT--------GVDQDRRV-----VITKHGEI-SYDYLVL 103
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETT 256
+ GA ++ TL++A + + E ER + E+ + ++
Sbjct: 104 AAGATTNFFGNKSVERNSYAMKTLQEAIALRGHIIHEFERAARKSAPEEREARRRHLNFV 163
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES--GAIPNIAADK 314
I G G + A + ++ F + + E SV E+ +P + D
Sbjct: 164 IVGGGATG-------IEMAGALMELIEIFKKEFHTIDFSEVSVTLLEAMGSVLPMVPPDL 216
Query: 315 NSDKY-ILELQPAIKGLESQIFEADLVLWTVGSKPLLPH---VEPPNNRLHDLPLNARGQ 370
+L + L + + E D T+ + ++P + R D + G+
Sbjct: 217 QQHTIDVLRKKGVDVRLNTAVTEYDGNDLTLNNGEVIPTKTVIWAAGVRAQDFIKDCGGE 276
Query: 371 AE------TDETLCVKGHPRIFALGDSSALRDSS-GRPLPATAQVAFQQADFAGWNLWAA 423
+ +E L VKG R+FA+GD + + RPLP A VA Q+A N+ A
Sbjct: 277 VDRAGRVIVEENLLVKGSDRVFAIGDCANFQHGDLQRPLPTVAPVATQEAMQVKKNIMAL 336
Query: 424 INDRP---LLPFRFQNLGEMMILGRNDAAVS-PSFVEGVTL--DGPIGHSARKLAYLIRL 477
I + L F + +LG M +G+ +A ++ P V G L G A L +L+RL
Sbjct: 337 IAGKTPDQLEKFVYHDLGAMATIGKGEAVMNGPMPVLGFNLKASGFFAWFAWMLVHLVRL 396
Query: 478 PTDEHRLKVGVSWL 491
V V W+
Sbjct: 397 AGKYADFTVSVKWI 410
>gi|189424099|ref|YP_001951276.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Geobacter lovleyi SZ]
gi|189420358|gb|ACD94756.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Geobacter lovleyi SZ]
Length = 418
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 105/425 (24%), Positives = 173/425 (40%), Gaps = 99/425 (23%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K RI I+G GFGG++ A L K +LLVD++ +F+P+LY++ + ++
Sbjct: 2 QKKRIVIVGMGFGGVHAAQALAG------KGHDILLVDRNNYHLFQPLLYQVATAGLEQE 55
Query: 138 EIA------------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE 185
IA RF L TG+ F + +++
Sbjct: 56 SIAYSVRAMARSWPDVRF-HLTEVTGIDFSRKEIQV-----------------------T 91
Query: 186 SGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFE---- 240
SGL+ YD+L++ G+ + + AF LEDA + + LS ER E
Sbjct: 92 SGLL-PYDYLIIGAGSATNFFGLTAVEQHAFDLKELEDAEVLRNHILSAFERAVIEPDPA 150
Query: 241 -----------------------RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARK 277
+E V A + T EA ++L+A
Sbjct: 151 RKRALMTFVVVGGGPTGVEFAGALIELVNFVLAKDYPELGIHTARVVLVEATDRLLAAMP 210
Query: 278 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 337
+L + Y ++ +R + SV+ + + ++ A+K S + + A
Sbjct: 211 QELGM-YTLQKLRSM-----SVEVLLNAQVVDVDAEKVSLH------------DGAVIPA 252
Query: 338 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS 397
++W+ G K P RL ++P A G+ + L + HP +F +GD + L+
Sbjct: 253 HTLVWSAGVK-----AAPLAARL-EVPRAAGGRIIVEPDLTLADHPDVFVIGDIAWLQ-Q 305
Query: 398 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG 457
G+ LP AQVA Q +A + A L PFR+ + G M +GRN AAV+ F G
Sbjct: 306 DGKALPMIAQVAMQMGVYAAKAILAKEQGSVLPPFRYHDKGSMATIGRN-AAVANVF--G 362
Query: 458 VTLDG 462
+ L G
Sbjct: 363 LQLRG 367
>gi|83814448|ref|YP_446316.1| NADH dehydrogenase [Salinibacter ruber DSM 13855]
gi|294508253|ref|YP_003572311.1| NADH dehydrogenase [Salinibacter ruber M8]
gi|83755842|gb|ABC43955.1| NADH dehydrogenase [Salinibacter ruber DSM 13855]
gi|294344581|emb|CBH25359.1| NADH dehydrogenase [Salinibacter ruber M8]
Length = 451
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/422 (23%), Positives = 165/422 (39%), Gaps = 38/422 (9%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+P + I+G GF GL A L D +V LVD++ F+P+LYE+ ++ +
Sbjct: 12 RPHVVIVGAGFAGLEAAKTLR------DAPVRVTLVDRNNYHKFQPLLYEVAMAGLEPDD 65
Query: 139 IAPRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA ++ N V F V + P+ V L + YD L+L
Sbjct: 66 IAHNVRNIFQGNETVNFRLGTVVDIDPARQ-------------QVHLHGSQSLSYDHLIL 112
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEE-KGIVQAINVET 255
+ GA +PG E A+P + DA + +R L + ER + +R +G + + V
Sbjct: 113 AAGAVSTDFGIPGVEEHAYPLKNVPDAVNLRNRVLRQFERYDRQRAAAGEGALTFVVVGG 172
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS--VKQPESGAIPNI--- 310
G L+ Q RC+ E + K P+ +
Sbjct: 173 GPTGVEMAGAFVELFDTLNDDFAQFDTREEARCLLLEMEDDLLPPYKAPQRAYTRQVLEA 232
Query: 311 -AADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 368
D ++ + + P + + ++ ++W G K P L D +
Sbjct: 233 RGVDVQTNTAVERVAPDRVHLADGRVLPTQTLVWAAGVK------ASPVANLLDAEQDRA 286
Query: 369 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
+ L V HP ++ +GD +A+ G P AQVA Q A + + D
Sbjct: 287 DRVVVSPDLTVPEHPDVYVVGDMAAIEGEDGYE-PQLAQVAIQSGRHAADQIQRRLRDAT 345
Query: 429 LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGV 488
F + +LG+M +GRN AAV+ F G+ G + + ++ +L +RL V
Sbjct: 346 TERFEYWDLGQMATIGRN-AAVA-EFAGGIAFRGFMAWFLWVVIHIAKLVGFRNRLSALV 403
Query: 489 SW 490
+W
Sbjct: 404 NW 405
>gi|410461176|ref|ZP_11314828.1| NADH dehydrogenase [Bacillus azotoformans LMG 9581]
gi|409925961|gb|EKN63159.1| NADH dehydrogenase [Bacillus azotoformans LMG 9581]
Length = 407
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 100/416 (24%), Positives = 166/416 (39%), Gaps = 100/416 (24%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K+P + ILG G+GG+ TA+ L+ + ++ + LV++ L+E +G +
Sbjct: 2 KRPNVVILGAGYGGIMTAVNLQKTLGVNE--ANITLVNKHNYHYQSTWLHEGAAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+I D++ + V F KD V + P + TV+LE G + YD+LV+
Sbjct: 60 KIRIPINDVIQPSKVNFIKDTVVEIKPQEK-------------TVILEKGEPLSYDYLVI 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLE---------DAC------RVDRK------------ 230
LG E + + G E+A+ +++ + C V+++
Sbjct: 107 GLGFESETFGIKGLKEYAYSITSINSVRLIREHIEVCFAQYNNEVEKREELLTIVVGGAG 166
Query: 231 ------LSELERRNFERLEEKGI----VQAINVETTICPTGTPGNREA----ALKVLSAR 276
L EL R E +E I V+ + VE PT PG +A A+ L R
Sbjct: 167 FTGIEFLGELANRIPELCDEYDIDRKKVRVVCVEAA--PTALPGFNQALVEYAMNHLEQR 224
Query: 277 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 336
V+ +G ++K+ I + D+ + E++ A
Sbjct: 225 GVEFKIG-------------TAIKECTPDGII-----VSKDEVVEEIKAAT--------- 257
Query: 337 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSAL- 394
V+W G + N+ + A RG+ + L G+ +F +GD + L
Sbjct: 258 ---VVWAAGVR--------GNSIVEKSGFEAMRGRVKVQPDLRAPGYDEVFIVGDCALLI 306
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDR--PLLPFRFQNLGEMMILGRNDA 448
+ RP P TAQ+A Q AD NL A I + L F G + LG +DA
Sbjct: 307 NEEINRPYPPTAQIAIQMADTCAANLAALIRGKEGELKAFVPDIKGTVCSLGHDDA 362
>gi|398836870|ref|ZP_10594196.1| NADH dehydrogenase, FAD-containing subunit [Herbaspirillum sp.
YR522]
gi|398210657|gb|EJM97299.1| NADH dehydrogenase, FAD-containing subunit [Herbaspirillum sp.
YR522]
Length = 427
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/392 (21%), Positives = 161/392 (41%), Gaps = 58/392 (14%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+G GFGGL A L D ++ ++D++ +F+P+LY++ + + A I
Sbjct: 2 PHVVIIGCGFGGLAAARELA------DADVRITMIDRTNHHLFQPLLYQVATAGLSAPAI 55
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ D+L++ ++ L+ + V+ V LE G ++YD L+++
Sbjct: 56 SAPIRDILSDQ-----RNVTTLMADVTAIDVDAR-------AVSLEDGSRIDYDHLIVAA 103
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL----SELERRNFERLEEKGIVQAINVET 255
G+ A A TL DA + R++ ER + +R ++ +
Sbjct: 104 GSTHSYFGRDDWARLAPGLKTLADAFEIRRRVLMAFEYAERESDDRRRQEWLT------F 157
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRC-------------IRRVGEFEASVKQP 302
T+ G G A V AR + G F R R +G + A + +
Sbjct: 158 TVIGGGATGVEMAGTLVEIAR--HTLRGEFRRIDPQSARVVLIEGSDRILGAYPADLSEK 215
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGLES----QIFEADLVLWTVG--SKPLLPHVEPP 356
+ + D + ++ + + Q + V+W+ G + PL +
Sbjct: 216 AREQLQALGVDVRTGSRVVHIDEQCVRYTNFDGEQSLASRTVVWSAGVAASPLGKSLGVE 275
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+R +P++ L + GH ++ +GD +A + S G+P+P + A Q A
Sbjct: 276 TDRAGRVPVS--------PELNIAGHDNVYVIGDLAAAQ-SDGKPVPGVSPAAKQMGRIA 326
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
G N+ I +R L F +++ G + +GR A
Sbjct: 327 GRNIKNRIANRALESFVYRDYGSLATIGRRAA 358
>gi|56964688|ref|YP_176419.1| NADH dehydrogenase [Bacillus clausii KSM-K16]
gi|56910931|dbj|BAD65458.1| NADH dehydrogenase [Bacillus clausii KSM-K16]
Length = 400
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 166/394 (42%), Gaps = 63/394 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K RI I G G+GG+ TA+ L + +D + LV++ + L+E +G ++
Sbjct: 3 KARIVIAGAGYGGMNTAVTLSKKLGPND--ASITLVNKHDYHYQTTWLHEPAAGTLEPDR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ AD+L + V F +D V L +D V+L+ G + EYD+LVL+
Sbjct: 61 TRVKIADVLNTSRVNFVQDEV-LEVKTDE------------KKVMLKEGEL-EYDYLVLA 106
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK--GIVQAINVETT 256
LGA + +PG E AF TL A +V + + + N+ +E+K G++ T
Sbjct: 107 LGATAETFGIPGVHEHAFTKWTLNGARQVKDHI-DAQFANYNNVEDKHEGLL-------T 158
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEASVKQPESGAIPNIAADKN 315
G + LS R +L Y V R R+ EA+ A+P D
Sbjct: 159 FVVAGAGFTGIEFIGELSERVPELCKTYDVPREKVRLFVVEAA-----PTALPGF--DPE 211
Query: 316 SDKYILELQPAIKGLESQI-------------------FEADLVLWTVGSKPLLPHVEPP 356
+Y + L + +G+E +I +A+ V+W G + P +E
Sbjct: 212 LVEYAMNLLES-RGVEFKINTPIKEVTASGVIVGEGEEIKAETVVWATGVRG-NPVIEKS 269
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVAFQQADF 415
RG+ + + L GH +F +GD + + + RP P TAQ+A Q A
Sbjct: 270 GFEA------MRGRVKVNPDLRAPGHDDVFIIGDCALIINEEINRPYPPTAQIAMQMAKT 323
Query: 416 AGWNLWA-AINDRPLLPFRFQNLGEMMILGRNDA 448
NL A L F+F N G + LG A
Sbjct: 324 CANNLIALNKGSTDLETFKFDNKGTVASLGGKQA 357
>gi|433604439|ref|YP_007036808.1| FAD dependent pyridine nucleotide-disulfide oxidoreductase
[Saccharothrix espanaensis DSM 44229]
gi|407882292|emb|CCH29935.1| FAD dependent pyridine nucleotide-disulfide oxidoreductase
[Saccharothrix espanaensis DSM 44229]
Length = 436
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 107/428 (25%), Positives = 177/428 (41%), Gaps = 49/428 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP++ ++G GF G + LE + D ++ V+ ++ ++ P+L E+ G +D
Sbjct: 3 KPKVLVVGTGFAGFHCLKALEKALPPD--AADLVAVNPTDYMLYVPLLPEVAGGTLDPRR 60
Query: 139 IA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A P +L VQ V P A T + ++ +D +VL
Sbjct: 61 VAVPLRPELPRTRLVQAHATSVD------------PDARTCTAIDVEGRSQVITWDRIVL 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG--------IVQ 249
+ G+ +L VPG AE A F ++ +A L + R E E+ G +V
Sbjct: 109 TAGSVTRLMSVPGVAEHALGFKSVAEAV----YLRDHVLRQIELAEQDGDPARTTFVVVG 164
Query: 250 AINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIP 308
A T + G ++ AL RKV + + RV + + P +
Sbjct: 165 AGYTGTELVAQG----QQLALAAARGRKVPPIRWVLLDLAPRVLPGLDERLSGPALKVLR 220
Query: 309 NIAADKNSDKYILELQPAIKGL-ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA 367
D + + E+ P L + +W VG +P P VE DLP
Sbjct: 221 QRGVDVRLETSVAEVTPTCAKLTDGTEIPTRTAVWCVGVRPD-PLVES-----VDLP-TV 273
Query: 368 RGQAETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNLWAAIN 425
+G+ L V G +FA GD +A+ D + G+P P TAQ A +Q A N+ A++
Sbjct: 274 KGRLAVGADLLVPGRSDVFAAGDMAAVPDVFNGGKPTPMTAQHAQRQGKLAAHNVAASLG 333
Query: 426 DRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG-PIGHSARKLAYLIRLPTDEHRL 484
+R ++LG ++ L A +P + L G P AR +L+ +P + R+
Sbjct: 334 HGTPREYRHRDLGFVVDLAGAQAVANPLHLP---LTGWPAKLVARGY-HLLAMPGN--RV 387
Query: 485 KVGVSWLT 492
+V WLT
Sbjct: 388 RVAADWLT 395
>gi|148238681|ref|YP_001224068.1| NADH dehydrogenase [Synechococcus sp. WH 7803]
gi|147847220|emb|CAK22771.1| NADH dehydrogenase [Synechococcus sp. WH 7803]
Length = 497
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 101/442 (22%), Positives = 177/442 (40%), Gaps = 64/442 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ P + I+GGGF G+ L + ++ L+D+ +F+P+LY++ +G V
Sbjct: 18 RHAPHVVIVGGGFAGVRACKALA------NADVRISLIDKRNFNLFQPLLYQVATGLVSR 71
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A L+ VQ V + P G ++ +G YD+L
Sbjct: 72 GDVATPLRQLVGRQRNVQVLLGEVTQINPE--------------GKQIVFNGKGYGYDYL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAIN-VE 254
VL+ G+ FA P LE A + R+L E+ E+ +A ++
Sbjct: 118 VLATGSGSTFFGHENWRTFAPPMKILEHAEEIRRRL----LMAMEQAEQTPDPEARRFLQ 173
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIPN 309
T + G P E ++ +L+ R R++ + + + G A+P
Sbjct: 174 TVVIVGGGPTGCE-----MAGATSELMRNAMRREFRQLNPADTRIVLVDPGDRVLRAMPE 228
Query: 310 I---AADKNSDKYILEL---------QPAIKGLES----QIFEADLVLWTVGSKPLLPHV 353
AA + + +E+ QP + + Q +A V+WT G +P H+
Sbjct: 229 ALSQAAQETLEALGVEMLFKGRVQTMQPGEVTVGTPDGDQRLQAATVIWTAGVRP--SHL 286
Query: 354 EPPNNRLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS-GRPLPATAQVA 409
+L D + G+ + V+GHP I +GD + + + G PLP A A
Sbjct: 287 ---GKKLADAIGCETDRSGRVIVEPDFSVQGHPEIRVVGDLCSYKHTKDGNPLPGMAGPA 343
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
Q F G ++ A + + F + + G M +L R DA + G G IG
Sbjct: 344 TQAGGFVGKDIAAMVGGQSRPTFSWFDFGSMAVLDRVDAVAD---LRGFKFKGGIGWLLW 400
Query: 470 KLAYLIRLPTDEHRLKVGVSWL 491
A+L +P E+R + + W+
Sbjct: 401 AAAHLAFMPDRENRYTLLIKWI 422
>gi|307726556|ref|YP_003909769.1| NADH dehydrogenase [Burkholderia sp. CCGE1003]
gi|307587081|gb|ADN60478.1| NADH dehydrogenase [Burkholderia sp. CCGE1003]
Length = 448
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 156/364 (42%), Gaps = 32/364 (8%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV LVD++ ++KP+L+E+ +G +D + +A G +F + + L ++
Sbjct: 33 RAQVTLVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELTGLDRANR 92
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
P+ G +L ++EYD LV+++G+ V GA EF+ T+ A R
Sbjct: 93 RLTLAPVVDDDGAELLPVR--VLEYDTLVIAIGSTTAFFGVKGAPEFSLALDTVSQAERF 150
Query: 228 DRKL----SELERRNFERLEE---KGIVQAINVETTICPTGTPGNREAA-----LKVLSA 275
++L E + E +E ++ I G G +A +VLSA
Sbjct: 151 RKRLIAACMRAEHQAHEPVESGPGTSPSSEPRIQVAIVGGGATGVELSAELRNTAQVLSA 210
Query: 276 ---------RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA 326
V +VL R + + V + + + + + + E+ P
Sbjct: 211 YGLHKLDPRHDVGIVL--IEAGPRILPALQERVSTATAELLGKLGVKLMTGETVAEVAPG 268
Query: 327 -IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 385
I+ + ADL +W G + P + +L LP+N GQ TL + +
Sbjct: 269 IIRTASGKTVRADLTVWAAGIRA--PAIL---GQLDGLPVNRLGQLNVRRTLQTEIDDNV 323
Query: 386 FALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
FALGD +A + + +P AQ A QQA F L A +++RPL F +++ G ++ LG
Sbjct: 324 FALGDCAACPWPGNEKNVPPRAQAAHQQATFLLKALAARLDNRPLPEFTYRDFGSLVSLG 383
Query: 445 RNDA 448
A
Sbjct: 384 HFSA 387
>gi|269929064|ref|YP_003321385.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Sphaerobacter thermophilus DSM 20745]
gi|269788421|gb|ACZ40563.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Sphaerobacter thermophilus DSM 20745]
Length = 406
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 145/388 (37%), Gaps = 67/388 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVD 135
++ + ILGGG+ GL A+RL + + P +V LVD F + L+++ +G+
Sbjct: 4 ERTQEVVILGGGYAGLMAAVRL-----ANRRVPSRVTLVDAKAEFPERIRLHQVAAGQQL 58
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
P +LL TGV+F + R L P L T G L YDWL
Sbjct: 59 RRRSIP---ELLRGTGVEFMQGRASELDPEAQL----VAVQTRDGQRTLR------YDWL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERL-----EEKGIVQA 250
+ +LG++ L +PG + L+D + LER R+ GI A
Sbjct: 106 LYALGSQVDLSPIPGLHQHTL---ALDDRSTAKDLAARLERLGDGRVLIVGGGLTGIEAA 162
Query: 251 I-------NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPE 303
+ + + G G + R+V G +R R+ E + V +
Sbjct: 163 VELAERFPRLAIELVTAGALGEDLSPAGAAHIRRVFERHGIALREHARIEEIQEGVAR-- 220
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 363
+ G E F D+ LW G + P L
Sbjct: 221 -----------------------LAGGERIPF--DICLWAGGFR------APGLAARAGL 249
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
P N RGQ D TL V GHP I GD++ G+PL + AG L
Sbjct: 250 PTNERGQVIVDRTLQVPGHPEILVAGDAALAPGPGGKPLRMSCAAGQPMGAHAGDTLARL 309
Query: 424 INDRPLLPFRFQNLGEMMILGRNDAAVS 451
I + PFRF + + LGR+D +
Sbjct: 310 IRGQEPEPFRFSYILRCISLGRHDGLIQ 337
>gi|218668141|ref|YP_002424609.1| DoxD family protein/pyridine nucleotide-disulfide oxidoreductase
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|218520354|gb|ACK80940.1| DoxD family protein/pyridine nucleotide-disulfide oxidoreductase
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 752
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 102/445 (22%), Positives = 179/445 (40%), Gaps = 70/445 (15%)
Query: 73 TWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLS 131
T P + P + I+G GFGGL A RL K P +V L+D+ +F+P+LY++ +
Sbjct: 320 TCPPEGAPHVVIVGAGFGGLACAARL-------TKTPVRVTLIDRHNYHLFQPLLYQVAT 372
Query: 132 GEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI-- 189
+ +IA L C DHL V + G + LI
Sbjct: 373 ASLSPADIAATVRGLF---------------C--DHLNVQVLLGQVTGIDTTQRAVLIGK 415
Query: 190 --VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEE-KG 246
+ YD+LVL+ GA +A T++DA + R++ FE+ E +
Sbjct: 416 RRLSYDYLVLATGASHSYFGRDEWEPYAPGLKTIDDAVEIRRRILS----AFEQAESAED 471
Query: 247 IVQAINVETTICPTGTPGNREAALKV--LSARKVQLVLGYFVRCIRRVGEFEASVK-QPE 303
+ + + T + G P E A + L ++ YF RV +++ + P
Sbjct: 472 PAERLGLLTFVIVGGGPTGVELAGDIAELVRHGMEKEFHYFDPASARVVLIQSAARILPT 531
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD--------------LVLWTVGSKPL 349
+ + A ++ ++ +E+ LES++ D VLW G
Sbjct: 532 FPGVLSEKAQRSLERLGVEVM-----LESRVEHIDQEGVRINGERLASRTVLWAAGV--- 583
Query: 350 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 409
V P R + + G+ + + L V G P +F +GD++ G+P+P A A
Sbjct: 584 ---VASPAARWLNAAADRSGRVKVEPDLSVAGLPNVFVIGDTALANAWKGKPVPGLAPAA 640
Query: 410 FQQADFAGWNLWAAI---NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 466
Q + + + +++P PF ++++G + +GR A S GV + G
Sbjct: 641 KQGGAYVARTIRRKLQGQSEQP--PFAYRHMGSLATIGRKAAVAS---FNGVNVSGASAW 695
Query: 467 SARKLAYLIRLPTDEHRLKVGVSWL 491
L ++ L +R+ V +W
Sbjct: 696 WLWGLIHVALLVGLRNRISVMFNWF 720
>gi|302035420|ref|YP_003795742.1| respiratory NADH dehydrogenase [Candidatus Nitrospira defluvii]
gi|300603484|emb|CBK39814.1| respiratory NADH dehydrogenase [Candidatus Nitrospira defluvii]
Length = 439
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 147/354 (41%), Gaps = 41/354 (11%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D+ F+P+LY++ G + EIA +L Q ++ +L + +G+
Sbjct: 40 VTLIDRKNHHTFQPLLYQVALGVLSPGEIASSLRRIL-----QPARNLHTIL--GEVVGI 92
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEF---AFPFSTLEDACRV 227
+ V L G +V YD+L+L+ GA G E+ A T+EDA +
Sbjct: 93 D-----VAARNVQLNDGALVAYDYLILAAGAR---HAYFGHDEWEADAPGLKTIEDAVEI 144
Query: 228 DRKLSELERRNFERLEEKGIVQAINVETTICPTGT-PGNREAALKVLSARKVQLVLGY-- 284
+L FER E+K + + + G P E A + ++ L +
Sbjct: 145 RSRLL----LAFERAEQKAQLTGRDEPLSFAVIGGGPTGVELAGAIADLARLALAKDFKA 200
Query: 285 ----------FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 334
+ R +G + + + + + + +D + +QP + +
Sbjct: 201 IDTMQARVRLYEGASRILGTYSEDSSRKAAEQLEQLGVEVCTDSLVRAVQPGRIRVGDEW 260
Query: 335 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 394
D+ +W G P P + + + G+ ++ L V GH +F +GD +AL
Sbjct: 261 IATDVTIWATGVAP------SPLAKTLGVATDRSGRVPIEQDLSVPGHREVFVIGDMAAL 314
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
D++GRP+P A A QQ A N+ + RP PFR+ + G M +G + A
Sbjct: 315 VDANGRPVPGLAAAALQQGQQAARNILNDLQRRPREPFRYVDRGSMATIGHHRA 368
>gi|88807978|ref|ZP_01123489.1| hypothetical protein WH7805_07446 [Synechococcus sp. WH 7805]
gi|88788017|gb|EAR19173.1| hypothetical protein WH7805_07446 [Synechococcus sp. WH 7805]
Length = 497
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 100/440 (22%), Positives = 174/440 (39%), Gaps = 60/440 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ P + I+GGGF G+ L + ++ L+D+ +F+P+LY++ +G V
Sbjct: 18 RHAPHVVIVGGGFAGVRACKALA------NADVRISLIDKRNFNLFQPLLYQVATGLVSR 71
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A ++ VQ V + P G ++ +G YD+L
Sbjct: 72 GDVATPLRQMVGRQRNVQVLLGEVTQINPE--------------GQQIVFNGKAYGYDYL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAIN-VE 254
VL+ G+ FA P LE A + R+L E+ E+ +A ++
Sbjct: 118 VLATGSGSTFFGHENWRTFAPPMKILEHAEEIRRRL----LMAMEQAEQTPDPEARRFLQ 173
Query: 255 TTICPTGTPGNREAA--------------LKVLSARKVQLVL-GYFVRCIRRVGEFEASV 299
T + G P E A + L+ ++VL R +R + E S+
Sbjct: 174 TVVIVGGGPTGCEMAGATSELMRNAMRREFRQLNPSDTRIVLVDPGDRVLRAMPE---SL 230
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLES----QIFEADLVLWTVGSKPLLPHVEP 355
Q + + + + +QP + + + +A V+WT G +P H+
Sbjct: 231 SQAAQETLEALGVEMLFKGRVQTMQPGEVTVGTPDGDRRLQAATVIWTAGVRP--SHL-- 286
Query: 356 PNNRLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQ 411
+L D + G+ V GHP I +GD + + + G PLP A A Q
Sbjct: 287 -GKKLADAIGCETDRSGRVIVAPDFSVPGHPEIRVVGDLCSYKHTRDGNPLPGMAGPATQ 345
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
F G ++ A ++ R F + + G M +L R DA + G G IG
Sbjct: 346 AGGFVGKDIAAVVSGRSRPTFSWFDFGSMAVLDRVDAVAD---LRGFKFKGGIGWLLWAA 402
Query: 472 AYLIRLPTDEHRLKVGVSWL 491
A+L +P E+R + + W+
Sbjct: 403 AHLAFMPDRENRYTLLIKWI 422
>gi|427711426|ref|YP_007060050.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
6312]
gi|427375555|gb|AFY59507.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
6312]
Length = 443
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 96/431 (22%), Positives = 166/431 (38%), Gaps = 53/431 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+GGGF GLY A L +V L+D+ +F+P+LY++ +G V I+
Sbjct: 7 HVVIVGGGFAGLYAAKSL------GQAPVKVTLIDKRNFHLFQPLLYQVATGSVSPANIS 60
Query: 141 -PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P A L VQ + V P + G + YD LV++
Sbjct: 61 SPLRAILNRYKNVQVLLEEVTGFDPQTQ--------------TIKTKGREIPYDSLVVAT 106
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLE-EKGIVQAINVETTIC 258
G + A T+EDA + R++ FE E E V+ T +
Sbjct: 107 GVSHHYFGNDHWQQTAPGLKTVEDALEIRRRIF----MAFEAAEKEMDPVKRQAWLTFVI 162
Query: 259 PTGTPGNREAA--------------LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 304
G P E A + + R+ +++L R + + A +
Sbjct: 163 VGGGPTGVELAGAIAELAFATLKQDFRNIDTRETKILL--LEGLDRILPPYPADLSAKAE 220
Query: 305 GAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVLWTVGSKPL-LPHVEPPNNR 359
++ + + + + I G E + A +LW G K L V +
Sbjct: 221 ASLSKLGVTVKTRTLVTNITDNIVTTKHGEEVEKIAAHTILWAAGVKASGLGRVLAEST- 279
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
L+ G+ + L + +P I+ +GD + +G PLP A VA Q+ ++
Sbjct: 280 --GASLDRVGRVIVEPDLSLPNYPNIYVIGDLANYAHQNGNPLPGIAPVAIQEGEYLAKL 337
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ A + PL F + + G + ++G+N+A V+ + G GP+ A++ L
Sbjct: 338 IRAKVKGEPLPTFNYDDAGSLAVIGQNEAVVN---LWGWKFSGPLAWLIWVFAHIYYLIE 394
Query: 480 DEHRLKVGVSW 490
+H+L V W
Sbjct: 395 FDHKLVVMTQW 405
>gi|241663632|ref|YP_002981992.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Ralstonia pickettii 12D]
gi|240865659|gb|ACS63320.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Ralstonia pickettii 12D]
Length = 444
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 156/393 (39%), Gaps = 36/393 (9%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
QV+LVD++ ++KP+L+E+ +G +D +A G +F + +K L
Sbjct: 43 QVILVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKGLDRVTKSI 102
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
+ G VL E + YD LVLS+G+ VPG AE A T A R R
Sbjct: 103 IVSGCVDADGTEVLPERA--ISYDTLVLSIGSVTHFFGVPGTAEHAIALDTAWQAERFRR 160
Query: 230 KLSELERRNFERLEEKGIVQAI-NVETTICPTGTPG--------NREAALKVLSARKVQL 280
KL R + G+ A V+ I G G N L K+
Sbjct: 161 KLIAACMR-----AQNGVGDARPQVDIAIVGAGATGVELSAELRNTAHVLAAYGLHKLDP 215
Query: 281 VLGYFVRCIRRVGEFEASVKQPESGA----IPNIAADKNSDKYILELQP-AIKGLESQIF 335
+ I +K+ S A + + D + + + E+ A+ +
Sbjct: 216 RHDIRIHLIEGGPRILPVLKERISAATTELLHKLDVDVITSERVTEVTASAVNTASGKSI 275
Query: 336 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSAL 394
ADL +W G + P LP+N GQ TL V+G I+A GD +S
Sbjct: 276 PADLTVWAAGIRA------PSVLGELGLPVNKLGQVIVSRTLQVEGDDSIYAFGDCASCP 329
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 454
+ +P AQ A QQA + L + +P+ PF F++LG ++ LG A
Sbjct: 330 WPEASTSVPPRAQAAHQQATYLFDALRKRMEGKPVQPFAFKDLGSLVSLGHFSAV----- 384
Query: 455 VEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV 486
G + G IG S + RL T +R+ V
Sbjct: 385 --GSLMGGLIGGSMFIEGLMARLMYTSLYRMHV 415
>gi|171914382|ref|ZP_02929852.1| hypothetical protein VspiD_24425 [Verrucomicrobium spinosum DSM
4136]
Length = 637
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 159/385 (41%), Gaps = 56/385 (14%)
Query: 133 EVDAWEIAPRFA---DLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI 189
EV +APR L G F+ VKL VN P G +LL+ G+
Sbjct: 4 EVVGGSLAPRHVVNPIRLICDGADVFRGLVKL--------VNLP-----GKRLLLDGGVT 50
Query: 190 V-----EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEE 244
+D +V +LGAE L +PG +E A+ DA ++ + R+EE
Sbjct: 51 AGTVEFTFDHIVFALGAEVDLTRIPGMSEHAYLVRNCGDAMKLRATI-------IGRMEE 103
Query: 245 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 304
++ + G + ++ +A ++ +L R +V + SV S
Sbjct: 104 ANLISDAATRRHLLSFIVVGGGYSGVE--TAGQMIDLLHSMCRFYEQVQPEDFSVTLVHS 161
Query: 305 G--AIPNIAADKNSDKYILELQP-AIKGL----------------ESQIFEADLVLWTVG 345
G +P ++A K +D +LQ +K L + + +A V+ TVG
Sbjct: 162 GEKVLPMLSA-KLADYTSTQLQNMGVKILFKARVKAATARTVILDDGRKIDAYTVVCTVG 220
Query: 346 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 405
+ P P + DLPL +G + T VKG ++A GD ++ + G P T
Sbjct: 221 NAPH-PQILALGAS-GDLPLE-KGHVVVEATGQVKGCTHVWAAGDCASFPKAGGGKCPET 277
Query: 406 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 465
AQ A++Q G N+ A + R L PF F LGE+ +G A + G G I
Sbjct: 278 AQFAYRQGLLVGDNIAACLQGRSLAPFAFTGLGELASIGHRKAVAE---IFGWHFSGIIA 334
Query: 466 HSARKLAYLIRLPTDEHRLKVGVSW 490
+ YL++LP + +L+V W
Sbjct: 335 WFMWRTIYLMKLPGLDRKLRVMSEW 359
>gi|340777755|ref|ZP_08697698.1| NADH dehydrogenase [Acetobacter aceti NBRC 14818]
Length = 427
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 150/383 (39%), Gaps = 31/383 (8%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KK I I+GGG GL A RL + + + + ++ L+D+S V+KPML+ +G
Sbjct: 3 KKSEILIVGGGVAGLALATRLGNSIGKQGQA-RITLIDKSFSHVWKPMLHCFAAGTAQNE 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
F + +F+ V + V GP+ + G VL G VEYD L+L
Sbjct: 62 NDRISFMAQASEHHFEFWPGEVIGVDRDKREAVLGPLHSSDGAIVL--EGRTVEYDALIL 119
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
S+G+ PG AE L +A + K E L A+++ I
Sbjct: 120 SIGSCANDFGTPGVAEHCLFIDNLVEANGFNEKF------RMELLRAYAGDGALDI--AI 171
Query: 258 CPTGTPGNREAA----------LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI 307
G G + AA L S L + R + F +V + +
Sbjct: 172 VGGGATGTQLAAELHKALELVGLHSFSQTPPSLNITLLEAGPRILPAFPEAVSEAAQKEL 231
Query: 308 PNIAADKNSDKYILELQPAIKGL-ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 366
I + + + L + A L +W G K P V L L+
Sbjct: 232 ERIGVKVRTSAMVSGADESGFSLKDGSHVPATLRVWAAGVKA--PEV---TTGFGGLSLS 286
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
GQ + + L P IFA+GD S + + PLP TAQVA QQA +L A + D
Sbjct: 287 RSGQIQINPNLQTIDDPAIFAMGDCSYIVND---PLPPTAQVARQQAHHLARHLPAWLRD 343
Query: 427 RPLLP-FRFQNLGEMMILGRNDA 448
+P F N G ++ LG +
Sbjct: 344 GREIPSCVFNNKGAIVALGNYNG 366
>gi|94986048|ref|YP_605412.1| NADH dehydrogenase [Deinococcus geothermalis DSM 11300]
gi|94556329|gb|ABF46243.1| NADH dehydrogenase [Deinococcus geothermalis DSM 11300]
Length = 379
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 151/379 (39%), Gaps = 55/379 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKP----QVLLVDQSERFVFKPMLYELLSGEVDA 136
+ ILG G+ GL TA +L KP + LL+DQ+ F+ L+E +
Sbjct: 2 KTLILGAGYAGLATATKL---------KPTPGLEALLIDQNPYHTFETRLHEAAAHNT-- 50
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+ LL TGV F + V+ + + V L+ G ++ YD LV
Sbjct: 51 -PVTLPILPLLRGTGVHFEQASVENVNVDER-------------EVKLKDGRVLTYDKLV 96
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV----DRKLSELERRNFERLEEKGIVQAIN 252
++LG+ +PG AE A L DA + +R S + N + + + +
Sbjct: 97 VALGSVTNFYRIPGLAEHAAELKQLSDADEIFNFINRVYSSDYQGNRDIVVGGAGLTGVE 156
Query: 253 VETTICPTGTPGNREAALK------VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA 306
+ T + +RE L V + K+ VL +R + +
Sbjct: 157 LVTELAQRAEVLSRERGLPPVQIYLVEAGPKILPVLDDALRAKAEKTLRDYGIHILVGHR 216
Query: 307 IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN-NRLHDLPL 365
I + AAD + ++ Q + Q+ A ++WT G ++ N + L
Sbjct: 217 ITSAAADSVT----VQTQDG----QEQVIPAGKIIWTGG-------IQARNIVQGEHLEK 261
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425
G+ DE L K +P +F +GD + G+P+P TAQ A QQ G NL
Sbjct: 262 GPGGRIAVDEYLRAKNYPDVFVIGDMGLALNQEGKPVPTTAQHAGQQGRLTGKNLMRLAK 321
Query: 426 DRPLLPFRFQNLGEMMILG 444
PL P+ LGE + LG
Sbjct: 322 GEPLEPYEPTTLGEFVSLG 340
>gi|198282247|ref|YP_002218568.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|198246768|gb|ACH82361.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Acidithiobacillus ferrooxidans ATCC 53993]
Length = 730
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 102/445 (22%), Positives = 179/445 (40%), Gaps = 70/445 (15%)
Query: 73 TWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLS 131
T P + P + I+G GFGGL A RL K P +V L+D+ +F+P+LY++ +
Sbjct: 298 TCPPEGAPHVVIVGAGFGGLACAARL-------TKTPVRVTLIDRHNYHLFQPLLYQVAT 350
Query: 132 GEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI-- 189
+ +IA L C DHL V + G + LI
Sbjct: 351 ASLSPADIAATVRGLF---------------C--DHLNVQVLLGQVTGIDTTQRAVLIGK 393
Query: 190 --VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEE-KG 246
+ YD+LVL+ GA +A T++DA + R++ FE+ E +
Sbjct: 394 RRLSYDYLVLATGASHSYFGRDEWEPYAPGLKTIDDAVEIRRRILS----AFEQAESAED 449
Query: 247 IVQAINVETTICPTGTPGNREAALKV--LSARKVQLVLGYFVRCIRRVGEFEASVK-QPE 303
+ + + T + G P E A + L ++ YF RV +++ + P
Sbjct: 450 PAERLGLLTFVIVGGGPTGVELAGDIAELVRHGMEKEFHYFDPASARVVLIQSAARILPT 509
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD--------------LVLWTVGSKPL 349
+ + A ++ ++ +E+ LES++ D VLW G
Sbjct: 510 FPGVLSEKAQRSLERLGVEVM-----LESRVEHIDQEGVRINGERLASRTVLWAAGV--- 561
Query: 350 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 409
V P R + + G+ + + L V G P +F +GD++ G+P+P A A
Sbjct: 562 ---VASPAARWLNAAADRSGRVKVEPDLSVAGLPNVFVIGDTALANAWKGKPVPGLAPAA 618
Query: 410 FQQADFAGWNLWAAI---NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 466
Q + + + +++P PF ++++G + +GR A S GV + G
Sbjct: 619 KQGGAYVARTIRRKLQGQSEQP--PFAYRHMGSLATIGRKAAVAS---FNGVNVSGASAW 673
Query: 467 SARKLAYLIRLPTDEHRLKVGVSWL 491
L ++ L +R+ V +W
Sbjct: 674 WLWGLIHVALLVGLRNRISVMFNWF 698
>gi|384566273|ref|ZP_10013377.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
glauca K62]
gi|384522127|gb|EIE99322.1| NADH dehydrogenase, FAD-containing subunit [Saccharomonospora
glauca K62]
Length = 375
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 155/376 (41%), Gaps = 56/376 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
I ++GGG+ GL ALR + + +V LV+ FV + L++L +G+ P
Sbjct: 5 IVVIGGGYSGLAAALRTARRL----RDARVTLVNPRAHFVERVRLHQLAAGQ--QLREHP 58
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
AD+L GV F RV+ L P D V + + YD LV ++G+
Sbjct: 59 -LADVLGRAGVDFVLGRVRELDPDDRRLVVDSLEAP------------MRYDTLVYAVGS 105
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
+ PG + A + +A + +++ + R E+G V + G
Sbjct: 106 VADTNA-PGVTDHAATVAEFAEARALRDRVATVAR-------EEGTVAVVG-------GG 150
Query: 262 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG------AIPNIAADKN 315
G AA +L Y +R V + + E G + + +
Sbjct: 151 LTGIETAA---------ELAETYPRLRVRLVTDGKPGATLSERGRSHLLRSFERLGVEVR 201
Query: 316 SDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD 374
D +E++P A++ + ADLV+W G +P + ++ L ++A G+ D
Sbjct: 202 GDAKAVEVRPGAVRLADGDAVTADLVVWATGFG--VPDLAARSS----LAVDAIGRVVVD 255
Query: 375 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRF 434
++L HP ++A+GDS+ + + G PL A + G + A N + P RF
Sbjct: 256 DSLRSVSHPDVYAVGDSAVVGHTDGSPLRMACATALPLGQYVGDVIAARANGKQPRPRRF 315
Query: 435 QNLGEMMILGRNDAAV 450
+ + + LGR D +
Sbjct: 316 RYVIRCLSLGRRDGLI 331
>gi|418464365|ref|ZP_13035305.1| Ndh protein [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359757161|gb|EHK91317.1| Ndh protein [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 445
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 162/392 (41%), Gaps = 50/392 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ V L+D+++ ++KP+L+EL +G +D A + N F + + L
Sbjct: 28 KRANVTLIDRNQTHLWKPLLHELATGALDDGVEALSYRAHACNHHFSFEQGSMVGLNRQH 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G +++ + YD+LV+++G++ G AE A R
Sbjct: 88 KYVELAPVYGEDGDMIVVSRR--IPYDYLVIAIGSKSNDFNTKGVAENCIFLDNPSQAMR 145
Query: 227 VDRKLSEL--ERRNFERLEEKG-------IVQAINVETTICPTGTPGNREAALKVLSARK 277
K+ EL + R + L++ G +V+ + I G G E + ++ +A +
Sbjct: 146 FQHKMLELFLKFRENQALDDIGEEESKQQLVEDGRINIAIVGAGATG-VELSAELYNAAE 204
Query: 278 VQLVLGYFVRCIRRVGEFEAS---VKQPESG-----AIP------------NIAADKNSD 317
GY G+ ++S V E+G A+P + D ++
Sbjct: 205 HLSSYGY--------GQIDSSRLKVTLVEAGPRILPALPERISNDATEELRKLGVDVKTN 256
Query: 318 KYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 376
I+E + + + Q+ ADL++W+ G + L +N Q +T
Sbjct: 257 TMIVEANKKQLVTKDGQLIAADLIVWSAGIR-----TSTITKNFDGLEINRINQLVVKKT 311
Query: 377 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 436
L IFA+GD L G+P+P AQ A Q A N+ A +++PL F + +
Sbjct: 312 LQTTNDSTIFAMGDCCFLMQDDGKPVPPKAQAAHQMASLCAKNMVALFDNKPLKDFEYND 371
Query: 437 LGEMMILGRNDA--AVSPSFVEG--VTLDGPI 464
G ++ L A A+S G +T++G I
Sbjct: 372 KGSLVSLSEFTAFGALSGKITGGSSMTIEGKI 403
>gi|345854875|ref|ZP_08807665.1| disulfide oxidoreductase [Streptomyces zinciresistens K42]
gi|345633658|gb|EGX55375.1| disulfide oxidoreductase [Streptomyces zinciresistens K42]
Length = 457
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 113/449 (25%), Positives = 185/449 (41%), Gaps = 70/449 (15%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP---MLYELLSGE 133
K++ RI ++GGG+ G+YTALRL Q + KP+ L ++E V P M Y+ E
Sbjct: 3 KERARILVVGGGYVGMYTALRL-----QRELKPE-LGRGEAEITVVSPDPYMTYQPFLPE 56
Query: 134 VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
A I+PR + + + + DH + G G + YD
Sbjct: 57 AAAGSISPRHVVVPLRRVLPRCRVVIGEATAIDHAKRTATLTTLASGEEGT-GGEQIAYD 115
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINV 253
LVL+ G+ + +PG A+ A F T+E+A + RN +++ +++
Sbjct: 116 ELVLAPGSVARTLPIPGLADHAVGFKTVEEAIGL---------RNH-------VIEQMDI 159
Query: 254 ETTICPTGTPGNREAALK---VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
++ T P R+AAL V LG R + +V+ + I
Sbjct: 160 ASS---TRDPEIRDAALTFVFVGGGYAGVEALGELEDMARYATRYYHNVRPEDMKWILVE 216
Query: 311 AADK-------NSDKY-ILELQPA------IKGLESQI-----------FEADLVLWTVG 345
AAD+ + +Y + EL+ LES + F V+WT G
Sbjct: 217 AADRILPEVGEDMGRYTVTELRRRNIDVRLHTRLESCVDRVAVLSDGARFPTRTVVWTAG 276
Query: 346 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRP--- 401
+P P DLPL ARG+ + L ++G P +A GD++++ D ++G P
Sbjct: 277 VRPH------PVLAASDLPLTARGRLKCTPELTIEGTPHAWAAGDAASVPDVTAGAPGTE 330
Query: 402 LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLD 461
AQ A +QA G N+ ++ PL + + G + LG + V G L
Sbjct: 331 CAPHAQHALRQAKVLGDNIAHSLRGEPLETYAHRYAGSVASLGFHKGVAQ---VYGRRLK 387
Query: 462 GPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
G ++ +L R+PT + +V W
Sbjct: 388 GYPAWFMHRVYHLSRVPTFNRKARVLAEW 416
>gi|258543121|ref|YP_003188554.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-01]
gi|384043043|ref|YP_005481787.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-12]
gi|384051560|ref|YP_005478623.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-03]
gi|384054667|ref|YP_005487761.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-07]
gi|384057902|ref|YP_005490569.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-22]
gi|384060543|ref|YP_005499671.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-26]
gi|384063835|ref|YP_005484477.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-32]
gi|384119844|ref|YP_005502468.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256634199|dbj|BAI00175.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-01]
gi|256637259|dbj|BAI03228.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-03]
gi|256640311|dbj|BAI06273.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-07]
gi|256643368|dbj|BAI09323.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-22]
gi|256646423|dbj|BAI12371.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-26]
gi|256649476|dbj|BAI15417.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-32]
gi|256652462|dbj|BAI18396.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655520|dbj|BAI21447.1| NADH dehydrogenase [Acetobacter pasteurianus IFO 3283-12]
Length = 430
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 144/381 (37%), Gaps = 34/381 (8%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K I I+GGG GL A RL + + K ++ L+D+S V+KPML+ +G V
Sbjct: 4 KSEILIVGGGVAGLALATRLGKTLGRHGKA-RITLIDKSFSHVWKPMLHCFAAGTVQNEN 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
F ++ +F+ V + V P+ + G VL + YD +VLS
Sbjct: 63 DRISFMAQASSHNFEFWPGEVVSIDREKREVVLSPLHASDGSKVL--DSRTMTYDAIVLS 120
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
+G+ PG E L +A + K ++F E ++ I
Sbjct: 121 IGSRANDFGTPGVLENCLFIDNLVEANAFNEKFRMEILKSFADNSE--------LDIAIV 172
Query: 259 PTGTPGNREAA-------------LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 305
G G + AA L +L + R + F SV
Sbjct: 173 GGGATGTQLAAELHKSLEIVDPVSLHAFGKAPPKLSITLLQSGARILPAFPESVSMAAQQ 232
Query: 306 AIPNIAADKNSDKYILELQPAIKGLESQIF-EADLVLWTVGSKPLLPHVEPPNNRLHDLP 364
+ I + + + P L+ A L +W G K P V L
Sbjct: 233 ELERIGVNVRTSARVAAADPTGFTLKDGTHVPATLRVWAAGVKA--PEV---TKTYGGLS 287
Query: 365 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 424
L+ GQ LC RIFA+GD S + D PLPATAQVA QQA +L A +
Sbjct: 288 LSRSGQINVKPNLCSVDDDRIFAMGDCSYIVDD---PLPATAQVARQQAHHLAQHLPAWL 344
Query: 425 NDRPLLP-FRFQNLGEMMILG 444
+P F N G ++ LG
Sbjct: 345 ESGKEVPSCIFHNKGAIVALG 365
>gi|343517869|ref|ZP_08754865.1| NADH dehydrogenase [Haemophilus pittmaniae HK 85]
gi|343394720|gb|EGV07267.1| NADH dehydrogenase [Haemophilus pittmaniae HK 85]
Length = 444
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 149/358 (41%), Gaps = 28/358 (7%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
+K +V LVD++ ++KP+L+E+ +G +D + + N F + + +
Sbjct: 28 EKAKVTLVDRNATHLWKPLLHEIATGVLDDGVDSLSYRAHGKNHHFSFEQGSITRINREQ 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ + G +++ + YD+LVL++G++ G A+ + + A R
Sbjct: 88 KYVELAPVYGSEGDMLVIARR--IPYDYLVLAIGSKSNDFNTKGVADNCIFLDSADQALR 145
Query: 227 VDRKLSEL-----ERRNFERLEE----KGIVQAINVETTICPTGTPGNREAALKVLSARK 277
K+ EL E R + + E + +V V I G G A +A
Sbjct: 146 FQEKMLELFLKFSENRALDDIGEAEFKQKLVDEHKVNIAIVGGGATGVELTAELYHAAED 205
Query: 278 VQLV-LGYFVRCIRRVGEFEASVKQ----PE--SGAI----PNIAADKNSDKYILELQP- 325
+ G +V EA + PE S A+ + AD + I E QP
Sbjct: 206 LSSYGYGKIDNSCLQVTLVEAGPRLLPALPEDLSAAVLSELQEMGADVRLNTMITEAQPN 265
Query: 326 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 385
+ E + +ADL++W G + + L +N Q +TL I
Sbjct: 266 TLLTKEGEEIKADLIVWAAGVR-----TSKVTQQFDGLEINRINQLVIKDTLQTSNDDSI 320
Query: 386 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMIL 443
FA+GD +AL +G+P+P AQ A Q A N+ A ++PL F++ + G ++ L
Sbjct: 321 FAIGDCTALIQPNGKPVPPRAQAAHQMAKACAKNIEAIFTNKPLKAFKYNDKGTLVSL 378
>gi|425748572|ref|ZP_18866558.1| pyridine nucleotide-disulfide oxidoreductase [Acinetobacter
baumannii WC-348]
gi|425491032|gb|EKU57321.1| pyridine nucleotide-disulfide oxidoreductase [Acinetobacter
baumannii WC-348]
Length = 430
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 102/439 (23%), Positives = 178/439 (40%), Gaps = 59/439 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ R+ I+G GFGG+ A L + + ++D+ +F+P+LY++ + E
Sbjct: 7 RHRVVIIGAGFGGIEAANSLAGV------NVDITIIDRRNHHLFQPLLYQVAGSSLSTSE 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT--VLLESGLIVEYDWLV 196
IA + N + V+ L G + G+ V+L+ G + YD LV
Sbjct: 61 IAWPIRYIFRN------RPEVRTLM--------GEVQGIDVGSRLVILDDGEKLHYDTLV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVET 255
++ GA FA TL DA + +R L+ E ER ++ + +A+ +T
Sbjct: 107 IATGATHAYFGHDEWERFAPGLKTLGDATNIRERILAAFE--EAERTKDPILRKAL--QT 162
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-AIPNIAADK 314
+ G P E LS +L R R + E+ V E+G + ++ +K
Sbjct: 163 FVIIGGGPTGVE-----LSGTIAELAKDTLSRDFRLIDPRESRVVLIEAGPRLLSVFPEK 217
Query: 315 NSDKYILELQ----------PAIKGLESQI------FEADLVLWTVGSKPLLPHVEPPNN 358
S L+ P E + A ++W G + P
Sbjct: 218 LSSYTRQALEQLGVEVVLGTPVTSCSEDGVVYDGKQLPAKTIIWAAGVQA------SPAA 271
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
R ++ + G+ D L V GHP IF +GD++A+ G+ +P A A QQ +
Sbjct: 272 RWLNVESDRAGRVVVDSNLTVTGHPEIFVIGDTAAVTMGDGKLVPGIAPAAKQQGKYVAK 331
Query: 419 NLWAAINDRPLL-PFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
+ + + L F++ + G + +GR+ A V + L G + KL ++ L
Sbjct: 332 TIDNRLKGKDLKESFKYYHQGNLATIGRSRAVVDMGKFQ---LQGVLAWWFWKLIHIYFL 388
Query: 478 PTDEHRLKVGVSWLTKSAI 496
+ RL V +SWL ++
Sbjct: 389 IGVQSRLNVALSWLWNHSV 407
>gi|390577027|ref|ZP_10257067.1| NADH dehydrogenase [Burkholderia terrae BS001]
gi|389931005|gb|EIM93093.1| NADH dehydrogenase [Burkholderia terrae BS001]
Length = 448
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 93/365 (25%), Positives = 155/365 (42%), Gaps = 31/365 (8%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
+ + QV LVD++ ++KP+L+E+ +G +D + +A G +F + + L +
Sbjct: 32 EPRAQVALVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQARWHGFEFQQGELVALDRT 91
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
G + G +L E ++EYD LV+++G+ V GA E++ T+ A
Sbjct: 92 AKSIRLGRVLDDDGAELLPER--VLEYDTLVIAIGSTTHFFGVKGAPEYSLALDTVHQAE 149
Query: 226 RVDRKL----SELERRNFERLEEKGIVQAIN--VETTICPTGTPGNREAA-----LKVLS 274
R ++L E + E +E + ++ I G G +A +VLS
Sbjct: 150 RFRKRLIAACMRAEHQAHEPVETNPGTTSTEPRIQVAIVGGGATGVELSAELRNTAQVLS 209
Query: 275 A---------RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 325
A V +VL R + + V S + + + + E+ P
Sbjct: 210 AYGLHKLDPRHDVGIVL--IEAGPRILPALQERVSTATSELLQKLGVKLMVGETVAEVAP 267
Query: 326 A-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPR 384
++ + ADL +W G K P V ++L LP+N GQ E TL
Sbjct: 268 GVVRTASGKTVRADLTVWAAGIKA--PAVL---SQLDGLPVNRLGQLEVRPTLQTMIDDN 322
Query: 385 IFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMIL 443
+FALGD +A + R +P AQ A QQA F L + RPL F +++ G ++ L
Sbjct: 323 VFALGDCAACAWPGNERNVPPRAQAAHQQASFLLRALGNRLEGRPLPEFTYRDFGSLVSL 382
Query: 444 GRNDA 448
G A
Sbjct: 383 GHFSA 387
>gi|397165971|ref|ZP_10489418.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Enterobacter radicincitans DSM 16656]
gi|402842751|ref|ZP_10891157.1| pyridine nucleotide-disulfide oxidoreductase [Klebsiella sp. OBRC7]
gi|396092392|gb|EJI89955.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Enterobacter radicincitans DSM 16656]
gi|402278645|gb|EJU27702.1| pyridine nucleotide-disulfide oxidoreductase [Klebsiella sp. OBRC7]
Length = 436
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 103/439 (23%), Positives = 179/439 (40%), Gaps = 56/439 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K + ++G GFGGL LE + + ++D+S +F+P+LY++ + +
Sbjct: 7 QKHHVVVIGAGFGGLSVVRELE------EPGVSITIIDRSNHHLFQPLLYQVAGASLPSA 60
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
EIA L + +D L+ + T VLL+ G ++YD LV+
Sbjct: 61 EIAWPVRSLFRHR-----EDVRTLMAEVQDVD-------TDSREVLLKDGSRIDYDTLVV 108
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFERLEEKGIVQAINVETT 256
+ GA +FA L+DA + R LS E+ E + + A +T
Sbjct: 109 ATGATHAYFGHDEWEQFAPGLKNLDDATTLRARILSAFEQA--ENTTDPALRAA--YQTF 164
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIPNIA 311
+ G P E LS +L R + E + E+G A P
Sbjct: 165 VIVGGGPTGVE-----LSGTIAELARKTLKNDFRSIDPTETRIILVEAGQRLLTAFPESL 219
Query: 312 AD---KNSDKYILEL---QPAIKG------LESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
++ ++ +K +E+ QP + Q A ++W G P R
Sbjct: 220 SEYTRQSLEKLGVEVSFGQPVTECSAEGVVYGGQPLPAKTIIWAAGV------TASPAAR 273
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
+ G+ L + HP IF +GD++A+ GR +P A A Q+ +
Sbjct: 274 WLKTEADRAGRVIVGADLTLPLHPEIFVIGDTAAVTGEDGRMIPGIAPAAKQEGQYVAKL 333
Query: 420 LWAAIND-RPLL-PFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
+ + + D +P+L PFR+++ G + +GR A V ++ L G + K+ +L L
Sbjct: 334 IQSRLKDEKPVLKPFRYRHQGNLATIGRGLAVVDMGRLK---LRGAMAWWFWKIIHLYFL 390
Query: 478 PTDEHRLKVGVSWLTKSAI 496
+RL V +SW+ +I
Sbjct: 391 IGTRNRLSVAISWIWNHSI 409
>gi|403668380|ref|ZP_10933655.1| NADH dehydrogenase-like protein [Kurthia sp. JC8E]
Length = 396
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 97/413 (23%), Positives = 158/413 (38%), Gaps = 97/413 (23%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+GG+ +AL + V + + +V +V+Q L+ L G + +A
Sbjct: 3 KIVILGAGYGGVLSALTVRQYV--NANEAEVTVVNQFPTHQIITELHRLAGGTISEKAVA 60
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L V +V D VN V L++G + YD LV+ LG
Sbjct: 61 FDLGKLFRGKNVNLKIAKV------DSFDVNAK-------AVKLDNGETLSYDALVVGLG 107
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERR---------------------- 237
++ +PG E +F ++EDA + + +S++E
Sbjct: 108 SKTGYFGIPGLEENSFVLKSVEDANNLRNHIISKIESYAKTGDKADATIVIGGGGLTGVE 167
Query: 238 -------NFERLEEKGIVQAINVETTICPTG------TPGNR-EAALKVLSARKVQLVLG 283
N ++ K V+A ++ + G P E A K L+ R V+ + G
Sbjct: 168 LVGEIIDNMPKIAAKYGVKAEELDVKLVEAGPRILPVLPQTLIERATKSLADRGVEFLTG 227
Query: 284 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 343
P +G N+ + K+ K A+ ++WT
Sbjct: 228 L-----------------PVTGVEGNVVSLKDGQK----------------ITANTIVWT 254
Query: 344 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-----SSALRDSS 398
G P VE L N RG+A ++ L HP +F +GD + +
Sbjct: 255 -GGVAQYPIVEQAG-----LVCN-RGKAVVNDFLQSDSHPDVFVVGDAAAAYAPGANKET 307
Query: 399 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
RP P TAQ A+Q + G+NL+A +N + + F N G + LGR D +
Sbjct: 308 DRPYPPTAQNAWQMGELVGYNLFAYLNGKDMKAFAPVNSGTLASLGRKDGVAT 360
>gi|294634075|ref|ZP_06712630.1| NADH dehydrogenase [Streptomyces sp. e14]
gi|292829889|gb|EFF88243.1| NADH dehydrogenase [Streptomyces sp. e14]
Length = 463
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 106/440 (24%), Positives = 189/440 (42%), Gaps = 64/440 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI ++G GF G+ RLE + + V LV ++ P+L ++ SG +
Sbjct: 12 RPRILVVGAGFAGVECVRRLERRL--SPHEADVTLVTPFAYQLYLPLLPQVASGVLTPQS 69
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE--YDWLV 196
IA ++ Q ++ R+ P +GV+ T+ + IV YD++V
Sbjct: 70 IA------VSLRRSQKYRTRI---IPGGAIGVDLRAKVCVIRTI---TDRIVNEPYDYIV 117
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVET 255
L+ G+ + +PG + AF TL +A + D +S+L + E +A ++
Sbjct: 118 LAPGSITRTFDIPGLTDHAFGMKTLAEAAYIRDHVISQL---DLADASEDPAERASRLQF 174
Query: 256 TICPTGTPGNREAA-LKVLSARKVQ--------LVLGYFVRCIRRVGEFEASVKQPESGA 306
+ G G AA L+ L+ V+ L+ + + ++ PE G
Sbjct: 175 VVVGGGYAGTETAACLQRLTHAAVERYPRLDPALIKWHLIDIAPKL--------MPELGD 226
Query: 307 IPNIAADKNSDKYILELQPAI---KGLESQIFEAD-------LVLWTVG--SKPLLPHVE 354
+A + + +E+ + K E ++ D ++WT G + PL+ ++
Sbjct: 227 KLGRSALEVLRRRGIEVSLGVSIAKAGEEEVTFTDGRVVPTRTLIWTAGVVASPLIATLD 286
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD---SSGRPLPATAQVAFQ 411
RG+ + +C+ G +FA+GDS+A+ D G P TAQ A +
Sbjct: 287 AET---------VRGRLAVNADMCLPGEDGVFAVGDSAAVPDLAKGDGAVCPPTAQHASR 337
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
Q N+ AA+ +PL P+ ++LG ++ LG DA P GV L G + +
Sbjct: 338 QGKAVAENVIAALRGQPLRPYHHKDLGLVVDLGGADAVSKPL---GVELHGVPAQAVARG 394
Query: 472 AYLIRLPTDEHRLKVGVSWL 491
+L L T+ + +V +WL
Sbjct: 395 YHLAALRTNVAKTRVATNWL 414
>gi|329767226|ref|ZP_08258753.1| hypothetical protein HMPREF0428_00450 [Gemella haemolysans M341]
gi|328836893|gb|EGF86540.1| hypothetical protein HMPREF0428_00450 [Gemella haemolysans M341]
Length = 396
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 101/389 (25%), Positives = 167/389 (42%), Gaps = 61/389 (15%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ GL T L+ + K V LV+++ L+E+ +G + A +I
Sbjct: 4 VVILGAGYAGLTTLKGLKKAAKAGEVK--VTLVNKNSYHYDTVNLHEVSAGNIPAKDICI 61
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
DL++ GV+F +D V + L +L ++YD LV+ LG
Sbjct: 62 DIKDLVS-PGVEFVQDEVIKIDVEKKL--------------VLTKKHELDYDVLVVGLGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
+P+ + G AE A P + + A ++ L + R + EEK + ++ + TG
Sbjct: 107 QPETFGIEGMAENALPIANVNAAEKIAATLED-NFRKYATSEEKDVK---DISVIVGGTG 162
Query: 262 TPGNREAALKVLSARKVQLVLGYFV--RCIRRVG-------------EF-EASVKQPESG 305
G L L RK +L Y + + ++ G E+ + + K E
Sbjct: 163 LAGME--FLGELVHRKKELCSKYGIDEKLVKIYGLDAAPTLLPMFTKEYSDYARKYLEDN 220
Query: 306 AIPNI--AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD- 362
I I A K + K ++ + G ++ + LV WT G + N+L D
Sbjct: 221 GIEIILGAGIKGATKDSFTIE--VDGERKDLYASTLV-WTAGVR---------GNKLMDE 268
Query: 363 -LP-LNARGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPATAQVAFQQADFAGWN 419
P L RG+ T + L V GH I+ +GD +A ++ RP P TAQ+A Q + G
Sbjct: 269 AFPELAKRGRLVTTQQLTVPGHDEIYIVGDCAAFIETGQERPYPTTAQIANQMGAYVG-- 326
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDA 448
A I+ + + F++ N G + LG D
Sbjct: 327 --ARISGKQVGDFKYINRGVVCSLGHKDG 353
>gi|357393677|ref|YP_004908518.1| putative oxidoreductase [Kitasatospora setae KM-6054]
gi|311900154|dbj|BAJ32562.1| putative oxidoreductase [Kitasatospora setae KM-6054]
Length = 454
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 97/431 (22%), Positives = 186/431 (43%), Gaps = 45/431 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++PRI I+GGGF GL A RLE + + ++ LV ++ P+L + +G +
Sbjct: 4 ERPRILIVGGGFAGLECARRLERKLAPSEA--EISLVTPFSYQLYLPLLPHVAAGVLTPQ 61
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+A L T + P +G++ P + + + + +YD+LVL
Sbjct: 62 SVAISLRRSLRRTHI----------VPGGAIGID-PRSKVAVVRKITDEVVAEKYDYLVL 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETT 256
+ G+ + +PG ++A TL +A + D +++L+ + E++ +A ++
Sbjct: 111 APGSVTRTFDIPGLTDYARGMKTLAEATYIRDHVIAQLDLASASMDEQE---RASRLQFV 167
Query: 257 ICPTGTPGNREAA-LKVLSARKV--------QLVLGYFVRCI-RRVGEFEASVKQPESGA 306
+ G G AA L+ L+ V QL+ + + + + E +
Sbjct: 168 VVGGGYAGTETAACLQRLTTAAVKRYPRLDPQLIKWHLIDIAPKLMPELGDKLGTTAMEI 227
Query: 307 IPNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNRLHDL 363
+ D + + E+ P +K + + ++WT G + PL+ ++
Sbjct: 228 LRKRGVDVSLGVSVAEVGPENVKFTDGRSLPCRTLIWTAGVAASPLIGTLDAET------ 281
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRD---SSGRPLPATAQVAFQQADFAGWNL 420
RG+ + V +FALGD++A+ D G P TAQ + +Q NL
Sbjct: 282 ---VRGRLAVTAEMRVPQFEGVFALGDAAAVPDLAKGDGAVCPPTAQHSARQGKRVAENL 338
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 480
AA+ ++PL P+ ++LG ++ LG DA P GV L G + +++ + T+
Sbjct: 339 VAALRNQPLEPYFHKDLGLVVDLGGKDAVSKPM---GVELHGAPAQVVARGYHVMAMRTN 395
Query: 481 EHRLKVGVSWL 491
+ + +WL
Sbjct: 396 SAKYRTAANWL 406
>gi|91780329|ref|YP_555536.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Burkholderia xenovorans LB400]
gi|91692989|gb|ABE36186.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia xenovorans LB400]
Length = 430
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 158/388 (40%), Gaps = 44/388 (11%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A RL + + + + V LVD+S ++KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGLLLATRLGNRLGRRGEA-HVTLVDRSPTHIWKPMLHTIAAGTTDVHQQQ 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMAC--THGGTVLLESGLIVEYDWLVLS 198
+ L + F R +C D +A G V++ G + YD LVLS
Sbjct: 65 VFY---LTHARAHGFTYRPGEMCGIDRDTQQIQLAALAMPNGEVVMGPGTL-GYDILVLS 120
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
G+ PG E + A +E R R +V+ + I
Sbjct: 121 TGSRANDFGTPGVPEHCHFIDSQPQA----EAFNEAIRSRIVR----SVVENEPLRVAIV 172
Query: 259 PTGTPGNREAA-----LKVLSAR-----KVQLVLGYFVRCIRRVGEFEASVKQPESGAIP 308
G G AA L V S+ + +L LG + R + F + +
Sbjct: 173 GAGATGVELAAELSHLLDVASSYGDASIRARLHLGLYESAPRVLTAFPPDISASSEALLR 232
Query: 309 NIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKP-----LLPHVEPPN-NRLH 361
+ + ++ + E + ++ + ADL++W G K LP +E + N+L
Sbjct: 233 RLGFEVHTRTRVTEARAQRLRLNDGSEVAADLMVWAAGVKAPDFLGKLPGIEASHANQLF 292
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPATAQVAFQQADFAGWNL 420
P TL IFALGD ++L RPLP TAQVA QQA+ +L
Sbjct: 293 VRP-----------TLQTTHDDHIFALGDCASLTPPGNERPLPPTAQVATQQAEHLAKHL 341
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDA 448
+N PL F F++ G ++ L +A
Sbjct: 342 PRWLNGEPLPEFTFRDFGALVSLSDYNA 369
>gi|335356465|ref|ZP_08548335.1| NADH dehydrogenase [Lactobacillus animalis KCTC 3501]
Length = 402
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 93/388 (23%), Positives = 165/388 (42%), Gaps = 57/388 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ +LG G+ GL T +L+ V K +++LVD+ + L+E+ SG A +I
Sbjct: 3 KVVVLGAGYAGLQTVHKLQKNV---KGKAKIILVDKDDYHYETTELHEVASGTQSALKIT 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
AD++ +F +D V L + V L+ +++YD+ VL+LG
Sbjct: 60 YPIADIVDPAVTEFIQDEVVKLDATKK-------------QVQLKQHGMLDYDYCVLALG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETTICP 259
+ + GA E A + ++ + + D L+ +E+ ++ ++K +Q + +C
Sbjct: 107 FVSETFGIKGAKENALEMTNIKQSLAIYDHILASMEK--YKETKDKRYLQLV-----VCG 159
Query: 260 TGTPG---------NREAALKVLSARKVQLVLGYFVRCIRRVGEF-----EASVKQPESG 305
G G R KV ++ + R + F + VK ES
Sbjct: 160 AGFTGIELAGALAEGRPEYAKVAGVAPSEVKITVVEAATRLLPMFSEKLADYGVKLVESL 219
Query: 306 AIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
I + K I E+ P K ++ +A+ ++WT G P V N +
Sbjct: 220 GIELLCGAK-----ISEVAPGEVIYEKDGQTNSLKAETIIWTTGVSGS-PVVGESNLQ-- 271
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNL 420
RG+ + L ++ LGD +A+ D SGRP P TAQ+A + A +A +L
Sbjct: 272 ----ERRGRVVVTDNLTDPNFDDLYILGDVAAVMDKESGRPYPTTAQIATEMAVYAAKDL 327
Query: 421 WAAINDRPLL--PFRFQNLGEMMILGRN 446
+ IN L PF +++ G + +G
Sbjct: 328 ESQINGNGHLSTPFVYKSKGTVASVGNT 355
>gi|187923508|ref|YP_001895150.1| NADH dehydrogenase [Burkholderia phytofirmans PsJN]
gi|187714702|gb|ACD15926.1| NADH dehydrogenase [Burkholderia phytofirmans PsJN]
Length = 445
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 154/382 (40%), Gaps = 26/382 (6%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
Q++L+D+ +KP+L+E SG++D ++A G +F + + L ++
Sbjct: 39 QIVLIDRWPTHFWKPLLHEAASGQLDPATHQLQYAVQAQRHGFEFEQGELTALDRAERHI 98
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
+ G +L V +D LVL++G+ + VPGAAE A P ++ A R
Sbjct: 99 TLSALHDADGREILPSRQ--VAFDTLVLAMGSVTQYFGVPGAAEHALPLESVAHAEAFRR 156
Query: 230 KLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAA--------LKVLSARKVQLV 281
KL + R + V I G G AA L + + V
Sbjct: 157 KLLDACLRANHARRARTAQADTPVSINIIGAGATGVELAAAVRDTVRLLNRYTPFSLDPV 216
Query: 282 LGYFVRCIRRVGEFEASVKQPESG----AIPNIAADKNSDKYILELQP-AIKGLESQIFE 336
+ +R I G ++ + S + N+ D S + E++ A+
Sbjct: 217 RDFRIRLIESSGRVLPALSETISARAQRMLANLGVDVLSSTRVTEVRTDAVLTDGGAPLA 276
Query: 337 ADLVLWTVG-SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL- 394
+D+ +WT G S P P L + +N Q + + TL +F LGD +A
Sbjct: 277 SDIAIWTAGISGP------PVLRTLDGIAVNRNAQIQVNRTLQCTNDANVFGLGDCAACP 330
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS- 453
D +G L AQVA QQA F L I L F +++ G ++ GR S S
Sbjct: 331 ADDAGAFLAPRAQVAHQQALFLARTLKCRIAGEALPEFVYRDAGTLVGFGREGTIGSLSS 390
Query: 454 --FVEGVTLDGPIGHSARKLAY 473
+ V +DG + + KL Y
Sbjct: 391 SLLTQPVFVDGWLATAVYKLIY 412
>gi|114564042|ref|YP_751556.1| NADH dehydrogenase [Shewanella frigidimarina NCIMB 400]
gi|114335335|gb|ABI72717.1| NADH dehydrogenase [Shewanella frigidimarina NCIMB 400]
Length = 428
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 145/360 (40%), Gaps = 49/360 (13%)
Query: 113 LVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNG 172
L+D++ ++KP L+E+ G +D ++ D G ++ + ++ PS
Sbjct: 35 LIDKNTVHIWKPKLHEVAVGVIDQSIEGLQYRDHGLKNGYRYIRGAIEQCDPSTKTIQLA 94
Query: 173 PMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS 232
P+ G ++ +EYD LVL+LG PGA + +L+ A KL
Sbjct: 95 PVFNDEGEMIIAARN--IEYDTLVLALGGVSNSFNTPGAEKHCIFLDSLDSANLFHHKLM 152
Query: 233 ELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 292
+ + E ++ GI I G G AA L + + +R
Sbjct: 153 DALLQLNETQDQLGI--------GIVGAGATGVELAA-----------ELHHVIESVREY 193
Query: 293 G-------EFEASVKQPESGAIPNIAADKNSDKYI--------LELQPAIKGLESQIF-- 335
G + ++ + + +P + ++ L L +K + + F
Sbjct: 194 GYQNISKDHLDINLIEASTKILPQLPEQVSTRAQTVLSKLGVKLHLGVQVKEVTKEGFVT 253
Query: 336 ------EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 389
+A++ +W G K P V LP+ R Q + D+ + VKG I+ALG
Sbjct: 254 ATGETIKANIKVWAAGVKG--PKV---FENFTQLPVTPRNQIDVDDCMRVKGIDDIYALG 308
Query: 390 DSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
D + L SG+P+P AQ A Q AD N+ + +P PF +++ G ++ L R A
Sbjct: 309 DCAQLILPSGKPVPPRAQAAAQMADRLYANICLKMKQQPEKPFVYKDYGSLVSLSRFSAV 368
>gi|402833902|ref|ZP_10882510.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas sp. CM52]
gi|402279370|gb|EJU28157.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas sp. CM52]
Length = 425
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 93/397 (23%), Positives = 165/397 (41%), Gaps = 54/397 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPRI ILGGG G+ A +L ++ VL++D + VF+P+LY++ + + A E
Sbjct: 7 KPRIVILGGGIAGIRAARKLA------NEAVDVLIIDHNNYQVFQPLLYQVATSMLSADE 60
Query: 139 -IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I P + + V F ++ G++ TV + G I +YD L++
Sbjct: 61 VIYPIRGFFRSASNVNFLLAEIE--------GIDAA-----AQTVRTDQGEI-DYDHLII 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR---KLSELERRNFERLEEKGIVQAINVE 254
+LG+ P E + P TL D+ + K+ E R + + K ++ + V
Sbjct: 107 ALGSTPNFFGSKSIEENSLPLKTLVDSIEIRSHVLKVFEEASREKDAAKRKALLTFVFVG 166
Query: 255 TTICPTGTPGN------------REAALKVLSARKVQLVL---GYFVRCIRRVGEFEASV 299
P G G+ +E S ++ L+ G + ++ + V
Sbjct: 167 A--GPIGVEGSGGLSELIYDVFQKEYHTIDFSEVEIHLIGADPGVLMMMPEKLRDETVRV 224
Query: 300 KQPESGAIPNIAADKNSDKYILELQP--AIKGLESQIFEADLVLWTVGSKPL--LPHVEP 355
+ + A+ + D L +P A K Q + V+W G +P+ L ++
Sbjct: 225 LEKKKVAVQCSMMVTDYDGETLRYKPFSAPKDAPLQEIKTRTVVWAAGVRPVDCLDGLDV 284
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQAD 414
+R + + D+T+ G ++A GD S+ RPLP A VA + D
Sbjct: 285 QKDRGRRIIV--------DDTMHAIGFENVYAAGDCSSFTPPGEERPLPTLAPVALAEGD 336
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
A N+ + PL +++ G M I+G ++A +S
Sbjct: 337 VAAANILHKLKGEPLEHLDYKSKGVMAIIGNSEAVMS 373
>gi|329766038|ref|ZP_08257599.1| NADH dehydrogenase, FAD-containing subunit [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137493|gb|EGG41768.1| NADH dehydrogenase, FAD-containing subunit [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 400
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 160/349 (45%), Gaps = 52/349 (14%)
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE----------RRN 238
+EYD+LVL++G++ E +FP T+EDA + ++ LS +E ++
Sbjct: 56 LEYDYLVLAVGSDNNFYGNKPIEENSFPIKTVEDAIELRNQTLSMMEIAAQTGSVELQQK 115
Query: 239 FERLEEKG-------IVQAIN--VETTICPTGTPGNREAALKVLSARKVQLV--LGYFVR 287
F G I+ IN V ++ N +L + K +++ L Y
Sbjct: 116 FLTFTVVGAGFAGVEIIGEINHFVRKSVKQAYPTINENNINMILISSKNEILPELNY--- 172
Query: 288 CIRRVGEFEAS-VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS 346
++GE S +K+ I N+ A + ++ EL + +I ++WT G
Sbjct: 173 ---KLGESARSYLKKMGVRIISNVKAIDAGESHV-ELS------DGEIIPCTTLIWTGGV 222
Query: 347 KPLLPHVEPPNNRLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLP 403
N+ + L + G+ D+ L +K HP +FALGD +A+ D+ +G+ P
Sbjct: 223 --------TTNSMIKSLICEHDKGGKVLVDKFLRLKDHPEVFALGDCAAILDTDTGKFYP 274
Query: 404 ATAQVAFQQADFAGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 462
TAQ A +++ N+ ++ +D L F +Q+ G M +G N A V+ + G+++ G
Sbjct: 275 PTAQHALRESTVVAQNIKKSLESDSNLKEFSYQSKGMMATIG-NKAGVAS--LMGLSITG 331
Query: 463 PIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDS-VALLQSTLTKVL 510
+ + YL LPT E ++K+G+ W S + + L+ T TK L
Sbjct: 332 VLAWVIWRTYYLSHLPTFESKVKIGIGWAINSFFGTDLTLIGETKTKYL 380
>gi|421886145|ref|ZP_16317324.1| NADH dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|379984274|emb|CCF89597.1| NADH dehydrogenase protein [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
Length = 438
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 103/439 (23%), Positives = 179/439 (40%), Gaps = 56/439 (12%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+K + ++G GFGGL LE + + ++D+S +F+P+LY++ + +
Sbjct: 9 QKHHVVVIGAGFGGLSVVRELE------EPGVSITIIDRSNHHLFQPLLYQVAGASLPSA 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
EIA L + +D L+ + T VLL+ G ++YD LV+
Sbjct: 63 EIAWPVRSLFRHR-----EDVRTLMAEVQDVD-------TDSREVLLKDGSRIDYDTLVV 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFERLEEKGIVQAINVETT 256
+ GA +FA L+DA + R LS E+ E + + A +T
Sbjct: 111 ATGATHAYFGHDEWEQFAPGLKNLDDATTLRARILSAFEQA--ENTTDPALRAA--YQTF 166
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIPNIA 311
+ G P E LS +L R + E + E+G A P
Sbjct: 167 VIVGGGPTGVE-----LSGTIAELARKTLKNDFRSIDPTETRIILVEAGQRLLTAFPESL 221
Query: 312 AD---KNSDKYILEL---QPAIKG------LESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
++ ++ +K +E+ QP + Q A ++W G P R
Sbjct: 222 SEYTRQSLEKLGVEVSFGQPVTECSAEGVVYGGQPLPAKTIIWAAGV------TASPAAR 275
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
+ G+ L + HP IF +GD++A+ GR +P A A Q+ +
Sbjct: 276 WLKTEADRAGRVIVGADLTLPLHPEIFVIGDTAAVTGEDGRMIPGIAPAAKQEGQYVAKL 335
Query: 420 LWAAIND-RPLL-PFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
+ + + D +P+L PFR+++ G + +GR A V ++ L G + K+ +L L
Sbjct: 336 IQSRLKDEKPVLKPFRYRHQGNLATIGRGLAVVDMGRLK---LRGAMAWWFWKIIHLYFL 392
Query: 478 PTDEHRLKVGVSWLTKSAI 496
+RL V +SW+ +I
Sbjct: 393 IGTRNRLSVAISWIWNHSI 411
>gi|373460111|ref|ZP_09551868.1| hypothetical protein HMPREF9944_00132 [Prevotella maculosa OT 289]
gi|371956597|gb|EHO74381.1| hypothetical protein HMPREF9944_00132 [Prevotella maculosa OT 289]
Length = 424
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 139/364 (38%), Gaps = 45/364 (12%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
D QV+LVD++ F P++Y++ S ++ IA F L N FF+ +
Sbjct: 31 DTDYQVVLVDKNNYNQFPPLIYQVASAGLEPSNIAFPFRRLFQNRKNFFFR-----MAEV 85
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ T GT+ YD LVL+ GA A T+ +A
Sbjct: 86 QRIDTEEKAILTSIGTI--------HYDDLVLAAGATTNFFGNKNIEASALSMKTVGEAM 137
Query: 226 RVDRKLSELERRNFERLE-EKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 284
R+ + + N ER E E V+ + T G P E A + R+ + Y
Sbjct: 138 RLRNTILQ----NLERAETEDDEVKRQRLLTIAIVGGGPSGVEIAGALAEMRRTIIPRDY 193
Query: 285 --------FVRCI----RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 332
+ I R +G + A+ + + +D + + Q LE
Sbjct: 194 PDLNASEMHIYLINAGPRLLGAMDEKSSHKAEKALKELGVEIIADCRVTDYQNHSLILED 253
Query: 333 QIF-EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAE---TDETLCVKGHPRIFAL 388
F A+ V+W G K NR+ +P+ + G TD VKG ++A+
Sbjct: 254 GDFIHAETVIWVSGIKA---------NRIEGIPVESIGHGGRILTDSFNRVKGMTNVYAI 304
Query: 389 GDSSALRDSSGRPL--PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRN 446
GD + P P AQVA QQA NL AA R PF ++N G M +GR
Sbjct: 305 GDQCLVEGDEAYPQGHPQLAQVALQQAANVARNLIAAGRGRSARPFVYRNPGTMATIGRK 364
Query: 447 DAAV 450
A V
Sbjct: 365 KAVV 368
>gi|406598578|ref|YP_006749708.1| respiratory NADH dehydrogenase II [Alteromonas macleodii ATCC
27126]
gi|407685571|ref|YP_006800745.1| respiratory NADH dehydrogenase II [Alteromonas macleodii str.
'English Channel 673']
gi|406375899|gb|AFS39154.1| respiratory NADH dehydrogenase II [Alteromonas macleodii ATCC
27126]
gi|407247182|gb|AFT76368.1| respiratory NADH dehydrogenase II [Alteromonas macleodii str.
'English Channel 673']
Length = 430
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 85/359 (23%), Positives = 148/359 (41%), Gaps = 40/359 (11%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ ++ LVD+S ++KP+L+E+ +G +D +A A +F + L
Sbjct: 28 KQAEITLVDRSRTHIWKPLLHEVAAGVIDKHSDGVDYAIHAAAHHYRFQLGEMCSLNAQA 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G VL E + YD LVL++G+ PG AE + +L+ A R
Sbjct: 88 QTITLSPLIDEEGTQVLPERE--IHYDQLVLAVGSVSNDFGTPGVAEHCYFLDSLKQAER 145
Query: 227 VDRK-LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAA-------------LKV 272
R L++L R N + E+K ++ I G G AA +
Sbjct: 146 FHRALLNQLIRINQQ--EDKD----ARIDVAIVGAGATGTELAAQLHHVANLSKAYGMPD 199
Query: 273 LSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 331
+SA ++++ + V R+ + A+ + D + E KGL
Sbjct: 200 MSASRLKITI---VEAGERILPALPERIANSARKALHKLGVDIKEQTMVAEADA--KGLI 254
Query: 332 SQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIF 386
++ +ADL++W G V+ P+ +L N Q D+ L H I+
Sbjct: 255 TKDGGRIDADLMVWAAG-------VKAPDFITKLALFETNRANQILVDKQLRSSSHKNIW 307
Query: 387 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
LGD + +G+ +P AQ A Q AD N+ + N + F +++ G ++ L +
Sbjct: 308 VLGDCCGFQQENGKWVPPRAQSAHQMADIVAHNITSLFNQKDTKDFTYKDYGSLVHLSK 366
>gi|302530219|ref|ZP_07282561.1| NADH dehydrogenase [Streptomyces sp. AA4]
gi|302439114|gb|EFL10930.1| NADH dehydrogenase [Streptomyces sp. AA4]
Length = 469
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 112/451 (24%), Positives = 178/451 (39%), Gaps = 67/451 (14%)
Query: 72 YTWPDKKKP-RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELL 130
Y K +P RI +LGGG+ GLYTA L+ ++ ++ V +VD + P L E
Sbjct: 27 YMAAAKSEPTRILVLGGGYVGLYTAYGLQKMLRANEA--SVTVVDPQPHMTYAPFLPEAA 84
Query: 131 SGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV 190
+G ++ + +L V RV + ++ V A H T+
Sbjct: 85 AGAIEPRHVVVPLRRVLKRCHV--LTARVTKI-ENERKSVTVEAADGHIETL-------- 133
Query: 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDA--------CRVDRKLSELERRNFERL 242
YD LV++LGA ++ +PG AE F T+ +A ++D S L+ +RL
Sbjct: 134 NYDVLVVALGAVARILPIPGLAEEGIAFKTIGEAIYLRNHIMTKLDEAASTLDPELRKRL 193
Query: 243 EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC----IRRVGEFEAS 298
+ T+ G G AL L V Y+ IR V A
Sbjct: 194 ----------LTFTVVGGGFAGIE--ALAELEDMTRFAVENYYPNIKPADIRWVMVEAAG 241
Query: 299 VKQPESGAIPNIAADKNSDKYILE--LQPAIKGLES--------QIFEADLVLWTVGSK- 347
PE + + +K +E L A K E+ F+ D ++WT G K
Sbjct: 242 RILPEVRETLGVYTVQQLEKRGIEVYLSTAAKSFENGHVVLSDGTEFDTDTIIWTAGVKA 301
Query: 348 -PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS------GR 400
P+L DLPL+ RG+ E + V GHP ++ GD++A+ D S
Sbjct: 302 NPVLAS--------SDLPLDKRGRVEATAAMQVVGHPDVWTAGDNAAIPDLSRTEQDPTA 353
Query: 401 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 460
P AQ A +QA N+ I + +NLG + LG + ++
Sbjct: 354 TCPPNAQHAVRQARLLAKNIIKVIRGGQPKDYYHKNLGAVASLGLHKGVADALNLKIKGF 413
Query: 461 DGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+ H A +L +PT ++++ W+
Sbjct: 414 PAWLFHRAY---HLKAMPTWNRKIRILFDWM 441
>gi|415757529|ref|ZP_11481369.1| Ndh protein [Aggregatibacter actinomycetemcomitans D17P-3]
gi|429734423|ref|ZP_19268445.1| NADH dehydrogenase [Aggregatibacter actinomycetemcomitans Y4]
gi|348655454|gb|EGY70907.1| Ndh protein [Aggregatibacter actinomycetemcomitans D17P-3]
gi|429152231|gb|EKX95063.1| NADH dehydrogenase [Aggregatibacter actinomycetemcomitans Y4]
Length = 445
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 89/392 (22%), Positives = 163/392 (41%), Gaps = 50/392 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ V L+D+++ ++KP+L+EL +G +D A + N F + + L
Sbjct: 28 KRANVTLIDRNQTHLWKPLLHELATGALDDGVEALSYRAHACNHHFNFEQGSMVGLNRQH 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G +++ + YD+LV+++G++ G AE A R
Sbjct: 88 KYVELAPVYGEDGDMIVVSRR--IPYDYLVIAIGSKSNDFNTKGVAENCIFLDNPSQAMR 145
Query: 227 VDRKLSEL--ERRNFERLEEKG-------IVQAINVETTICPTGTPGNREAALKVLSARK 277
K+ EL + R + L++ G +V+ ++ I G G E + ++ +A +
Sbjct: 146 FQHKMLELFLKFRENQALDDIGEEESKQQLVEDGHINIAIVGAGATG-VELSAELYNAAE 204
Query: 278 VQLVLGYFVRCIRRVGEFEAS---VKQPESG-----AIP------------NIAADKNSD 317
GY G+ ++S V E+G A+P + D ++
Sbjct: 205 HLSSYGY--------GQIDSSRLKVTLVEAGPRILPALPERISNDATEELRKLGVDVKTN 256
Query: 318 KYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 376
I+E + + + Q+ ADL++W+ G + L +N Q +T
Sbjct: 257 TMIVEAKKKQLVTKDGQLIPADLIVWSAGIR-----TSAITKNFDGLEINRINQLVVKKT 311
Query: 377 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 436
L IFA+GD L G+P+P AQ A Q A N+ + +++PL F + +
Sbjct: 312 LQTTNDSTIFAMGDCCFLMQDDGKPVPPKAQAAHQMASLCAKNMVSLFDNKPLKDFEYND 371
Query: 437 LGEMMILGRNDA--AVSPSFVEG--VTLDGPI 464
G ++ L A A+S G +T++G I
Sbjct: 372 KGSLVSLSEFTAFGALSGKITGGSSMTIEGKI 403
>gi|154346482|ref|XP_001569178.1| putative NADH dehydrogenase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066520|emb|CAM44317.1| putative NADH dehydrogenase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 527
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 107/449 (23%), Positives = 181/449 (40%), Gaps = 75/449 (16%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + +LG G+ G Y A L + K + ++ VF P+L + +G ++ +
Sbjct: 12 PNVVVLGTGWAGCYAAHHL------NPKLCNIQVISTRNHMVFTPLLPQTTTGTLEFRSV 65
Query: 140 APRFADL---LANTGVQFFK--------DRVKLLCPSDHLGVNGPMACTHGGTVLLESGL 188
++ LA +F + D ++ C +GV G G + +
Sbjct: 66 CEPITNIQPALAKLPHRFLRSVIYDVDFDEKQVKCVG--IGVVG------GSKNVPVNTF 117
Query: 189 IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIV 248
V YD+L+++ GA+P +PG E AF + +A + ++L ++ L I
Sbjct: 118 SVSYDYLIMAHGAKPNTFNIPGVEERAFFLREVTEARGIRKRL--VQNIMAANLPTTSIE 175
Query: 249 QAINVETTICPTGTPGNREAA---------------LKVLSARKVQL-----VLGYFVRC 288
+A + T+ G P E A +L KV + VLG F
Sbjct: 176 EAKRLLHTVVVGGGPTGIEFAANLADFFREDIKNVNTSLLPHCKVTVLEAGEVLGSFDAT 235
Query: 289 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT--VGS 346
+RR G+ E I A +DK + ++ LV+W+ VGS
Sbjct: 236 LRRYGQLRLKQLGVE---IRKTAVVNVTDKQVFTKS-------GEVLPTGLVVWSTGVGS 285
Query: 347 KPLLPHVEPPNNRLHDLPLNARGQAETDETLCV----KGHPRIFALGDSSALRDSSGRPL 402
P+ ++ + G+ D+ L V K P +FA GD +A S+ +PL
Sbjct: 286 GPITKALKCDK--------TSHGRISIDDHLRVLRDSKPIPNVFAAGDCAA---SNEKPL 334
Query: 403 PATAQVAFQQADFAGWNLWAAINDRPLL-PFRFQNLGEMMILGRNDAAVSPSFVEGVTLD 461
P A VA +Q + G + + + + PF +++LG M +G + A VS + L+
Sbjct: 335 PTLAAVASRQGRYIGKEINNLLKGKQMTKPFVYRSLGSMASIGSHSAIVSLGEKLKLDLN 394
Query: 462 GPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
G K AYL L + +L V V+W
Sbjct: 395 GYAALWVWKSAYLTILGSIRSKLYVIVNW 423
>gi|402492087|ref|ZP_10838872.1| NADH dehydrogenase protein [Rhizobium sp. CCGE 510]
gi|401809238|gb|EJT01615.1| NADH dehydrogenase protein [Rhizobium sp. CCGE 510]
Length = 420
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 175/430 (40%), Gaps = 55/430 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQ--VLLVDQSERFVFKPMLYELLSGEVDAWE 138
R+ I+GGGF GL A +D K P + ++D+ +F+P+LY++ + + E
Sbjct: 4 RVVIVGGGFAGLQLA--------KDLKCPNLSITIIDRRNHHLFQPLLYQVATTVLATSE 55
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA + KD LL + +GV+ + H V L+ G + YD LVL+
Sbjct: 56 IAWPIRAVFRGR-----KDVTTLL--GEVVGVD--VEKRH---VSLKGGHAIPYDTLVLA 103
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFER--LEEKGIVQAINVETT 256
GA FA LEDA + R+L FE+ LE +A + +
Sbjct: 104 TGARHAYFGRDEWEPFAPGLKALEDATTIRRRL----LLAFEKAELETDPHARAAMLTFS 159
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCI--------------RRVGEFEASVKQP 302
I G G A + A Q L R I R + F ++ Q
Sbjct: 160 IIGAGPTGVEMAGI---IAELAQRTLVEEFRNIDTTSARILLVEAGPRILPVFHEALSQY 216
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
++ ++ + + + + + + + + V+W G + V
Sbjct: 217 AERSLSSMGVEVRTGRPVTDCNEEGISIGDEFVPSRTVIWAAGVQASKAAVWVGAE---- 272
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
++ G+A L V HP IF +GD+++++ +G P+P A A QQ + + A
Sbjct: 273 --MDRAGRAIVQPDLTVFEHPEIFVVGDTASVKTGAGMPVPGIAPAAKQQGKYVAQVINA 330
Query: 423 AINDRPLLP-FRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
+ RP P F++++LG + +G + A + + L G I A++ L
Sbjct: 331 RLKQRPAPPAFKYRHLGNLATIGPSSAVIDFGRLR---LKGSIAWWIWGFAHIYFLIGTR 387
Query: 482 HRLKVGVSWL 491
R+ V +SWL
Sbjct: 388 SRMAVALSWL 397
>gi|298293540|ref|YP_003695479.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Starkeya novella DSM 506]
gi|296930051|gb|ADH90860.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Starkeya novella DSM 506]
Length = 436
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 102/432 (23%), Positives = 178/432 (41%), Gaps = 56/432 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PR+ I+G GFGGL A L D ++LVD+ F+P+LY++ + + +
Sbjct: 9 RPRVVIVGAGFGGLQVARGLA------DAPVDIILVDKHNYHCFQPLLYQVATAVLSPAD 62
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+A +L+ +D V +L + GV+ L+ S + YD+LVL+
Sbjct: 63 VAWPVRHILSR------QDNVTMLM-AQVTGVD------RAAQALITSEGPIPYDFLVLA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAIN-VETTI 257
GA A FA ++DA + R++ FER E A + T +
Sbjct: 110 TGATHSYFGHEEWAPFAPGLKDIQDATHLRRRILV----AFERAEASDDEAARRRLLTFV 165
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA--IPNIA---- 311
G P E A + + L + +RV A + E+G +P +
Sbjct: 166 IIGGGPTGVEMAGSIAEIARHALAPDF-----KRVDPRTARILLIEAGPRLLPVLTEPLS 220
Query: 312 --ADKNSDKYILEL---QPAIK-GLE------SQIFEADLVLWTVGSKPLLPHVEPPNNR 359
A + + +E+ +P + G + +I A +W G + P +
Sbjct: 221 AYARRRLEAMGVEVLTGRPVVDIGADHVELAGGEIIPASTKIWAAGVR------ASPAAQ 274
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
+ + G+ L V P IF +GD++A+ D +G+P+P A A Q D
Sbjct: 275 WLGVETDRAGRCLVGPDLSVPDAPEIFVIGDTAAVSDPAGKPVPGIAPAAKQMGDHVAKA 334
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ A + FR+++ G++ +GRN A V +E L G +G ++ L
Sbjct: 335 IEARLAGSTAPAFRYRHDGDLATIGRNSAVVKLGRLE---LTGFLGWMFWGFIHVYFLIG 391
Query: 480 DEHRLKVGVSWL 491
+R+ V ++WL
Sbjct: 392 TRNRIAVALAWL 403
>gi|434385616|ref|YP_007096227.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
gi|428016606|gb|AFY92700.1| NADH dehydrogenase, FAD-containing subunit [Chamaesiphon minutus
PCC 6605]
Length = 436
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 177/422 (41%), Gaps = 43/422 (10%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+G GFGGL A L Q K +VLL+D++ F P+LY++ + +++ P
Sbjct: 8 VVIIGAGFGGLQAAQSLA----QSGK--EVLLIDRNNYHTFVPLLYQVATAQLE-----P 56
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
A T V+ + R LL + + T + EYD+L+++ G+
Sbjct: 57 EHIIYPARTIVRCDRRRHFLLAEVEQIDFAARTIKTDRAEI--------EYDFLIIATGS 108
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFER--LEEKGIVQAINVETTIC 258
+ + VPGA EFAF ++ A + ++ L+ E + E L + ++ + +
Sbjct: 109 KSQYLGVPGAEEFAFSMRSIAQAVTLRNQILACFEAASIEVNPLRRQQLLTFVIIGGGAT 168
Query: 259 PTGTPGNREAALK--------VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
G L+ L+ R+V+L+L C+ + E + + +
Sbjct: 169 GAEVAGAFVELLRSRMRHEYPTLNLREVKLILVQSGDCL--LSELPPKLGIYTQKYLQKL 226
Query: 311 AADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
D I + P A+ + Q+ V+WT G +P + +D +
Sbjct: 227 GVDVRLSTKIDRITPDAVYLQDRQVISTKTVIWTAGVDAAVPDLA------NDWERGTKN 280
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
+ TL + ++A+GD++ + D +G+ L A A QQ N+ + +
Sbjct: 281 KLRVRPTLQSIEYANVYAIGDAAYV-DRAGQTLSGVAPEALQQGVAVARNITRQLRGQLP 339
Query: 430 LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVS 489
PF + N G + I+G + A V ++G G + +L+ LP +RL V ++
Sbjct: 340 QPFNYFNKGRLAIIGCH-AGVGQ--IQGWKFTGFLAWIMWLGVHLVYLPGYRNRLFVLLT 396
Query: 490 WL 491
WL
Sbjct: 397 WL 398
>gi|312194544|ref|YP_004014605.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Frankia
sp. EuI1c]
gi|311225880|gb|ADP78735.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Frankia
sp. EuI1c]
Length = 477
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 106/458 (23%), Positives = 177/458 (38%), Gaps = 98/458 (21%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ PRI ++GGG+ G+YTALRL + + + +V+ ++P L E +G ++
Sbjct: 20 RSAPRILVVGGGYVGMYTALRLRQRLRPGEA--TLTVVEPHSYMTYQPFLPEAAAGNLEP 77
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+ +L G RV + ++ T GG + YD LV
Sbjct: 78 RHVVVPLRKVL--RGCDVVSGRVTRVAHAERTAT----VRTVGG-----DEYDLGYDILV 126
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
++ G+ + +PG ++ F ++ +A + K+ I
Sbjct: 127 MAPGSVARTLPIPGLSDLGVGFKSVAEAIYLRNKV-------------------IGHLDA 167
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD--- 313
T P R AL + +G I + E E + S PNI D
Sbjct: 168 AASTRDPAERSRALTFV-------FIGGGYAGIEALAELEDMARYACS-YYPNICPDDLR 219
Query: 314 ----KNSDKYILELQPAI----------KGLESQI-------------------FEADLV 340
+ + + + E+ PA+ +G+E ++ F+AD V
Sbjct: 220 WVLVEATGRILPEVSPAMGLYTVKQLEHRGIEVRLNTRVTSLRDGRVELDDGAAFDADTV 279
Query: 341 LWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 398
+WT G + P+L DLPL+ +G+ + L V G + GD +A+ D S
Sbjct: 280 VWTAGVRAHPMLART--------DLPLDDKGRLRANPFLQVDGVEDAWTAGDCAAVPDLS 331
Query: 399 GRPLPA------TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSP 452
G PA +AQ A +QA NL A + DRP+ P+ + G + LG +
Sbjct: 332 G---PAGSFTSPSAQHAVRQARRLAENLVAHLRDRPIEPYCHRYAGSVASLGLHRGVAD- 387
Query: 453 SFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
V G+ L G + +L RLPT + +V W
Sbjct: 388 --VYGIKLRGWPAWFMHRTYHLSRLPTFNRKARVLADW 423
>gi|365879909|ref|ZP_09419305.1| NADH dehydrogenase protein [Bradyrhizobium sp. ORS 375]
gi|365292047|emb|CCD91836.1| NADH dehydrogenase protein [Bradyrhizobium sp. ORS 375]
Length = 416
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 110/437 (25%), Positives = 179/437 (40%), Gaps = 64/437 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD--- 135
KP + ++G GF GL E++ + V LVD+ F+P+LY++ + +
Sbjct: 6 KPSVVVIGAGFAGL------EAVRALARAEVSVTLVDRKNHHCFQPLLYQVATAALSPAD 59
Query: 136 -AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
AW I +D AN V + VNG V+ G + +D+
Sbjct: 60 VAWPIRAILSDQ-ANATVIMAE-------------VNGVDIARR--VVVTTDGPDLPFDY 103
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINV 253
LVL+ G P A FA T+EDA R+ + L+ ER ER ++ + Q +
Sbjct: 104 LVLATGVTTSYFNHPEWARFAPGLKTIEDATRIRAQILTCFERA--ERTDDVALRQ--KL 159
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI--------------RRVGEFEASV 299
T + G P E A + A Q VL R I R + F +
Sbjct: 160 MTFVIVGGGPTGVEMAGSI--ADIAQNVLAGDFRHIDPQSAKVVLIEAGQRLLSNFADEL 217
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL-VLWTVGSK--PLLPHVEPP 356
A+ + D +D + E L ++ A +LW G + P +
Sbjct: 218 SDYTRKALRRMNVDVITDAAVTECTRDSVTLSNRRHIACCSLLWAAGVRATPAADWIGAK 277
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
++R G+ D+ L V H IFA+GD +A S G+P+P A A Q +
Sbjct: 278 SDRA--------GRIVVDDHLRVPPHTNIFAVGDIAAA-SSGGKPVPGLAPAAKQMGRYV 328
Query: 417 GWNLWAAI--NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
G + I R LPF +++ G++ +GR A VS ++ + L G +G + + ++
Sbjct: 329 GELICGDIVGGARKPLPFVYRHQGDLATIGRKSAVVS---LKHLKLTGLLGWTFWGVVHI 385
Query: 475 IRLPTDEHRLKVGVSWL 491
L +R+ V ++WL
Sbjct: 386 YFLIGLRNRITVALNWL 402
>gi|62317654|ref|YP_223507.1| pyridine nucleotide-disulfide oxidoreductase [Brucella abortus bv.
1 str. 9-941]
gi|83269637|ref|YP_418928.1| flavin-containing monooxygenase FMO [Brucella melitensis biovar
Abortus 2308]
gi|260544885|ref|ZP_05820706.1| NADH dehydrogenase [Brucella abortus NCTC 8038]
gi|260756750|ref|ZP_05869098.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella abortus bv. 6 str. 870]
gi|260760180|ref|ZP_05872528.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella abortus bv. 4 str. 292]
gi|260763418|ref|ZP_05875750.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella abortus bv. 2 str. 86/8/59]
gi|260882565|ref|ZP_05894179.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella abortus bv. 9 str. C68]
gi|423168450|ref|ZP_17155152.1| hypothetical protein M17_02139 [Brucella abortus bv. 1 str. NI435a]
gi|423172115|ref|ZP_17158789.1| hypothetical protein M19_02647 [Brucella abortus bv. 1 str. NI474]
gi|423174154|ref|ZP_17160824.1| hypothetical protein M1A_01551 [Brucella abortus bv. 1 str. NI486]
gi|423176030|ref|ZP_17162696.1| hypothetical protein M1E_00292 [Brucella abortus bv. 1 str. NI488]
gi|423181544|ref|ZP_17168184.1| hypothetical protein M1G_02643 [Brucella abortus bv. 1 str. NI010]
gi|423184677|ref|ZP_17171313.1| hypothetical protein M1I_02645 [Brucella abortus bv. 1 str. NI016]
gi|423187829|ref|ZP_17174442.1| hypothetical protein M1K_02646 [Brucella abortus bv. 1 str. NI021]
gi|423190248|ref|ZP_17176857.1| hypothetical protein M1M_01929 [Brucella abortus bv. 1 str. NI259]
gi|62197847|gb|AAX76146.1| pyridine nucleotide-disulphide oxidoreductase family protein
[Brucella abortus bv. 1 str. 9-941]
gi|82939911|emb|CAJ12924.1| Flavin-containing monooxygenase FMO:Pyridine nucleotide-disulphide
oxidoreductase, class I:FAD-dependent pyridine
nucleotide- [Brucella melitensis biovar Abortus 2308]
gi|260098156|gb|EEW82030.1| NADH dehydrogenase [Brucella abortus NCTC 8038]
gi|260670498|gb|EEX57438.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella abortus bv. 4 str. 292]
gi|260673839|gb|EEX60660.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella abortus bv. 2 str. 86/8/59]
gi|260676858|gb|EEX63679.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella abortus bv. 6 str. 870]
gi|260872093|gb|EEX79162.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Brucella abortus bv. 9 str. C68]
gi|374536537|gb|EHR08057.1| hypothetical protein M19_02647 [Brucella abortus bv. 1 str. NI474]
gi|374538943|gb|EHR10450.1| hypothetical protein M17_02139 [Brucella abortus bv. 1 str. NI435a]
gi|374540155|gb|EHR11657.1| hypothetical protein M1A_01551 [Brucella abortus bv. 1 str. NI486]
gi|374546134|gb|EHR17594.1| hypothetical protein M1G_02643 [Brucella abortus bv. 1 str. NI010]
gi|374546977|gb|EHR18436.1| hypothetical protein M1I_02645 [Brucella abortus bv. 1 str. NI016]
gi|374554009|gb|EHR25422.1| hypothetical protein M1K_02646 [Brucella abortus bv. 1 str. NI021]
gi|374555688|gb|EHR27095.1| hypothetical protein M1E_00292 [Brucella abortus bv. 1 str. NI488]
gi|374556288|gb|EHR27693.1| hypothetical protein M1M_01929 [Brucella abortus bv. 1 str. NI259]
Length = 424
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 115/430 (26%), Positives = 180/430 (41%), Gaps = 53/430 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ++G GF GL L D K ++ L+DQ +F+P+LY++ + + EI
Sbjct: 7 PHIVVVGAGFCGLQLIRDL------DGAKVRITLIDQRNHHLFQPLLYQVATTILSTSEI 60
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A +L F+DR ++ + LG + T +V LE+G V YD LVL+
Sbjct: 61 AWPIRNL--------FRDRAEV---TTLLGTVIDVD-TARKSVFLENGDEVSYDMLVLAT 108
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFERLEEKGIVQAINVETTIC 258
GA + A LEDA + R L ER ER + QA+ + +I
Sbjct: 109 GARHAYFGNDQWEKLAPGLKALEDATTIRRRLLLAFERA--EREPDMARRQAL-LTFSIV 165
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP---NI 310
G G A + AR+ R + +A V E+G A P +
Sbjct: 166 GGGPTGVELAGIIAELARRT------LWPEFRNIDTRQARVLLLEAGPRILSAFPEDLSA 219
Query: 311 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE----PPNNRLHDLPLN 366
A + +K +E++ G+ + + V TVG + + H L L+
Sbjct: 220 YARRALEKLGVEVR---LGIPVKDITQEGV--TVGDEFIPCHTTVWAAGVAASPAALWLD 274
Query: 367 AR----GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
A G+ + L V GH IFA+GD++ + GRP+P A A QQ + + +
Sbjct: 275 AESDRAGRVKVLSNLSVPGHEDIFAIGDTAWVEGDDGRPVPGIAPAAKQQGAYVAKVIRS 334
Query: 423 AI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
+ N P LPFR+++ G + +G+ A V + L G I +A++ L
Sbjct: 335 RVENKTPPLPFRYKHQGNLATIGKGAAVVDMGRIR---LKGTIAWWFWGIAHIFFLIGTR 391
Query: 482 HRLKVGVSWL 491
R V SWL
Sbjct: 392 SRAAVAWSWL 401
>gi|433461574|ref|ZP_20419182.1| NADH dehydrogenase [Halobacillus sp. BAB-2008]
gi|432189906|gb|ELK46962.1| NADH dehydrogenase [Halobacillus sp. BAB-2008]
Length = 407
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 103/415 (24%), Positives = 163/415 (39%), Gaps = 100/415 (24%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
KKP I ILG G+GG+ TA++L+ + +D V LV++ L+E +G +
Sbjct: 2 KKPNIVILGAGYGGMMTAVKLQKNIGVND--ANVTLVNKHSYHYQTTWLHENAAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
D++ + ++ +D V + PS+ VLLE G V YD+LV+
Sbjct: 60 RTRIPIKDVIDTSKIKLIQDTVLEIKPSEK-------------RVLLEDGE-VTYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV---------------DRK------------ 230
SLG E + G E AF ++ A + D+K
Sbjct: 106 SLGFEAATFGIQGLKEHAFTIGSINSARLIRQHIEYNFAKYNTEPDKKPERLNIVVGGAG 165
Query: 231 ------LSELERRNFERLEEKGI----VQAINVETTICPTGTPGNR----EAALKVLSAR 276
+ EL R + E I V+ I VE PT PG E A+ L AR
Sbjct: 166 FTGIEFVGELANRVPDLCREYDIPRDQVRIICVEA--APTALPGFDPQLVEYAMNSLEAR 223
Query: 277 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 336
V+ L ++ + +K + E K + +
Sbjct: 224 GVEFKLSAMIKEV-------------------------TENKLVFE-----KDDQREEIG 253
Query: 337 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-AL 394
+ V+W G + N+ + + A RG+ E L +G+ +F +GD + +
Sbjct: 254 TNTVVWAAGVR--------GNSIVEESGFEANRGRIPVREDLRPEGYDDVFIVGDCALVM 305
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 448
+ + RP P TAQ+A Q+A+ NL I +R L PF G + LG +DA
Sbjct: 306 NEEAERPYPPTAQIAIQEAEHTAGNLERLIKGERHLEPFVPDLKGTVASLGDSDA 360
>gi|419712468|ref|ZP_14239928.1| putative oxidoreductase [Mycobacterium abscessus M93]
gi|382937723|gb|EIC62068.1| putative oxidoreductase [Mycobacterium abscessus M93]
Length = 393
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 96/401 (23%), Positives = 161/401 (40%), Gaps = 71/401 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGE-VDA 136
+ P + +LGGG+ G A RL Q + + LV+ E FV + L++ +G +
Sbjct: 4 QHPHVVVLGGGYAGTMAANRL-----QQNTNIDITLVNPREEFVHRLRLHQFAAGTGIAT 58
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
E AP RV+L+ S + ++ P + LESG +++YD+L+
Sbjct: 59 AEYAP------------MLGKRVRLVVDS-AVRIDAPARL-----IRLESGDVLDYDYLI 100
Query: 197 LSLGAEPKLDV-VPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
++G+ VPG +EFA+P S E A R+ LE G +V+
Sbjct: 101 YAIGSTDSTAAGVPGVSEFAYPLSEFESAQRLRVA-----------LETSG----PDVQI 145
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKN 315
T+ G G A+ R V+LV G G+ + P I A +
Sbjct: 146 TVVGAGLTGIEMASELADLGRHVRLVCG---------GQLAPTFGAPARRTIAQWFARRR 196
Query: 316 SD----KYILELQP-AIKGLESQIFEADLVLWT--VGSKPLLPHVEPPNNRLHDLPLNAR 368
D + E++P ++ + + + +W G L H L ++A
Sbjct: 197 VDVLENTSVTEVRPDSVVLADGTTLSSAITVWAGGFGVPALAAH--------SGLSVDAD 248
Query: 369 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
G+ TD+TL RI GD+ ++ P + A A + + + D
Sbjct: 249 GRLLTDDTLTSMDDGRIVGAGDAVT---TTSLPTRMSCYTANTTGAAAADTVLSRLADTE 305
Query: 429 LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
PFR +G+ + LGR +A + + + D P+G AR
Sbjct: 306 PAPFRLAYVGQCLSLGRGNAVLQFTRKD----DSPVGAHAR 342
>gi|312131230|ref|YP_003998570.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Leadbetterella byssophila DSM 17132]
gi|311907776|gb|ADQ18217.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Leadbetterella byssophila DSM 17132]
Length = 432
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 98/406 (24%), Positives = 163/406 (40%), Gaps = 73/406 (17%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P+ R+ I+G GFGGL A +L + QV+L+D++ F+P+ Y++ +
Sbjct: 6 PETPLKRVVIVGAGFGGLTLAQKLAK------ENVQVVLIDKNNYHQFQPLFYQVAMAGL 59
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI----- 189
+ I+ + F+ R N + T +LL+ I
Sbjct: 60 EPSSISFPLRKV--------FQKRK-----------NVHIRITKVREILLDKRRIRTDLG 100
Query: 190 -VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIV 248
+ YD+LVL +G + E A P ++ +A + ++ E NFE
Sbjct: 101 EIWYDYLVLGMGTNTNFFGMQNIIENAIPMKSISEAIYLRNRVLE----NFEAALSTRDQ 156
Query: 249 QAI-NVETTICPTGTPGNREAALKVLSARKVQLVLGY------FVRC--------IRRVG 293
AI + T + G P E + + +K+ L Y ++ I +V
Sbjct: 157 DAIAGLMTMVVVGGGPTGTEISGTLAEMKKMILPKDYPELDFDLMKIYIFESSDEILKVM 216
Query: 294 EFEASVKQ----PESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 349
EASVK E G I + ++ D Y+ AI +I D ++W+ G
Sbjct: 217 SDEASVKSRQYLEELGVI--VRVNERIDDYVDGY--AITSTGEKI-RTDNLIWSAGVIA- 270
Query: 350 LPHVEPPNNRLHDLP---LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP--LPA 404
N++ P G+ + +E ++G +FA+GD + + G P P
Sbjct: 271 --------NKIEGFPQEIYTRGGRLKVNEFNQLEGFHNLFAVGDMAYMSGDPGFPEGHPQ 322
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
AQ A QQ N+ I P+ PFR+++LG M +GRN A V
Sbjct: 323 LAQPAIQQGKLLAENILKLIKGEPMKPFRYKDLGSMATIGRNKAVV 368
>gi|393775971|ref|ZP_10364268.1| membrane bound respiratory NADH dehydrogenase 2 [Ralstonia sp. PBA]
gi|392716914|gb|EIZ04491.1| membrane bound respiratory NADH dehydrogenase 2 [Ralstonia sp. PBA]
Length = 450
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 153/363 (42%), Gaps = 43/363 (11%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
+V+L+D++ ++KP+L+E+ +G +D +A A F+ + L D +
Sbjct: 46 KVVLIDRAPTHIWKPLLHEVAAGSMDPNTHQLEYA---AQARWHHFEFQQGELLGLDRVA 102
Query: 170 VNGPMACTHG--GTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
+A H G +L + I YD LVL++G+ VPGAAE A T A R
Sbjct: 103 RTVSVAACHDEDGIEVLPARAIA-YDTLVLAIGSVTHDFGVPGAAEHAIKLDTAAQAERF 161
Query: 228 DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF-- 285
R+L R R+ ++ +V+ V+ I G G +A R VLG +
Sbjct: 162 RRRLIAACMRAENRIGQQDVVRP-TVDVAIIGAGATGVELSA----ELRNTAYVLGAYGL 216
Query: 286 ----------VRCIRRVGEFEASVKQPESGAIPNIAADKN----SDKYILEL-QPAIKGL 330
+ + ++ + SG + N + + + E+ + A+
Sbjct: 217 HHLDPKQDVRIHIVEAGPRILPALSERVSGETTKLLRRLNIEVLTGERVTEVREDAVLTA 276
Query: 331 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 390
+ ADL +W G P LP+N GQ E ++TL V+G I+A GD
Sbjct: 277 SGKTVPADLTVWAAGITA------PKVLGTLGLPVNRMGQIEVEQTLLVRGEDSIYAFGD 330
Query: 391 -SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR---PLLP-FRFQNLGEMMILGR 445
+S +P AQ A QQA F L AI R + P FRF++ G ++ LGR
Sbjct: 331 CASCAWPEMNTTVPPRAQAAHQQASF----LVKAIRTRLQGGVAPEFRFRDFGSLVSLGR 386
Query: 446 NDA 448
A
Sbjct: 387 FSA 389
>gi|386385141|ref|ZP_10070455.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces tsukubaensis NRRL18488]
gi|385667408|gb|EIF90837.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces tsukubaensis NRRL18488]
Length = 501
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 104/457 (22%), Positives = 190/457 (41%), Gaps = 75/457 (16%)
Query: 72 YTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKP--QVLLVDQSERFVFKPMLYEL 129
+T P + R+ + GGG+ G+YTAL L+ L+ + + ++L+V ++P L E
Sbjct: 20 FTGPARGT-RVLVAGGGYVGMYTALHLQKLLRPELARGDVEILVVSHDPYMTYQPFLPEA 78
Query: 130 LSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI 189
+G + + +L + + + + + +A GT +E
Sbjct: 79 AAGSISPRHVVVPLRRVLDKCAILIGE--ITAVTHAKRTATVSTLATAEEGTGAVE---- 132
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQ 249
+ YD LV++ G+ + VPG A++ F T+E+A + RN +++
Sbjct: 133 IPYDHLVIAPGSISRTLPVPGLADYGIGFKTVEEAIGL---------RNH-------VIE 176
Query: 250 AINVETTICPTGTPGNREAALK---VLSARKVQLVLGYFVRCIRRVGEFEASVK------ 300
+++ ++ T P R AAL V LG R + +VK
Sbjct: 177 QMDIASS---TRDPAIRAAALTFVFVGGGYAGVEALGELEDMARYTARYYHNVKPEDLRW 233
Query: 301 ---QPESGAIPNIAAD-----------KNSDKYILELQPAIKGLESQI--------FEAD 338
+ +P + + +N D + L+ + E+++ F +
Sbjct: 234 VLVEASDRILPEVGEEMGRYAIRELRRRNID---VRLETRLDSCENRLVVLSDGSRFPSR 290
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-S 397
++WT G KP P DLPLN RG+ L V+G R +A GD++A+ D +
Sbjct: 291 TIVWTAGVKPA------PVLAATDLPLNDRGRLRCTPELRVEGTDRAWAAGDAAAVPDVT 344
Query: 398 SGRP---LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSF 454
S P AQ A +QA N+ A+++DRP + + +G + LG + ++
Sbjct: 345 SAEPGALCAPNAQHAVRQAKVLAENIAASLHDRPAKEYAHKYVGSVASLGLHKGV---AY 401
Query: 455 VEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
V G L G ++ +L R+PT + ++ WL
Sbjct: 402 VYGRKLKGYPAWFMHRVYHLSRMPTLNRKARILGEWL 438
>gi|416043512|ref|ZP_11574576.1| Ndh protein [Aggregatibacter actinomycetemcomitans serotype d str.
I63B]
gi|347997013|gb|EGY38043.1| Ndh protein [Aggregatibacter actinomycetemcomitans serotype d str.
I63B]
Length = 445
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 89/392 (22%), Positives = 163/392 (41%), Gaps = 50/392 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ V L+D+++ ++KP+L+EL +G +D A + N F + + L
Sbjct: 28 KRANVTLIDRNQTHLWKPLLHELATGALDDGVEALSYRAHACNHHFNFEQGSMVGLNRQH 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G +++ + YD+LV+++G++ G AE A R
Sbjct: 88 KYVELAPVYGEDGDMIVVSRR--IPYDYLVIAIGSKSNDFNTKGVAENCIFLDNPSQAMR 145
Query: 227 VDRKLSEL--ERRNFERLEEKG-------IVQAINVETTICPTGTPGNREAALKVLSARK 277
K+ EL + R + L++ G +V+ ++ I G G E + ++ +A +
Sbjct: 146 FQHKMLELFLKFRENQALDDIGEEESKQQLVEDGHINIAIVGAGATG-VELSAELYNAAE 204
Query: 278 VQLVLGYFVRCIRRVGEFEAS---VKQPESG-----AIP------------NIAADKNSD 317
GY G+ ++S V E+G A+P + D ++
Sbjct: 205 HLSSYGY--------GQIDSSRLKVTLVEAGPRILPALPERISNDATEELRKLGVDVKTN 256
Query: 318 KYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 376
I+E + + + Q+ ADL++W+ G + L +N Q +T
Sbjct: 257 TMIVEAKKKQLVTKDGQLIPADLIVWSAGIR-----TSAITKNFDGLEINRINQLVVKKT 311
Query: 377 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 436
L IFA+GD L G+P+P AQ A Q A N+ + +++PL F + +
Sbjct: 312 LQTTNDSTIFAMGDCCFLMQDDGKPVPPKAQAAHQMASLCAKNMVSLFDNKPLKNFEYND 371
Query: 437 LGEMMILGRNDA--AVSPSFVEG--VTLDGPI 464
G ++ L A A+S G +T++G I
Sbjct: 372 KGSLVSLSEFTAFGALSGKITGGSSMTIEGKI 403
>gi|410448284|ref|ZP_11302367.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira sp.
Fiocruz LV3954]
gi|410017878|gb|EKO79927.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira sp.
Fiocruz LV3954]
gi|456875729|gb|EMF90924.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. ST188]
Length = 422
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 84/431 (19%), Positives = 169/431 (39%), Gaps = 54/431 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K ++ ++G GFGGL +L + ++ ++D+ +F+P+LY++ + + +
Sbjct: 6 KRKVVVIGAGFGGLQAIKKLSR-----NNDLEITVIDKKNHHLFQPLLYQVATAVLSPAD 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA L+ + V ++ + YD+L+LS
Sbjct: 61 IAIPIRSLVGE------RSNVTVVLGE-------ATKVDLAAKTVYYQNTSTNYDYLILS 107
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG---IVQAINVET 255
GA ++ L+DA ++ KL +FE+ E G +V+A+
Sbjct: 108 AGARSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKAL--LN 161
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYF---------VRCI----RRVGEFEASVKQP 302
+ G P E A + Q++ F + I R + F+ S+ +
Sbjct: 162 YVIIGGGPTGVELAGSIAELSH-QIIRDEFHTIDPALSKITLIEAAPRLLTTFDVSLGEF 220
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + + + ++++ LE ++ V+W G + N+
Sbjct: 221 TKKRLESRGVEVLTGARVIDIDERGVQLEGKMIPTQTVIWAAGVQA--------NSIAST 272
Query: 363 L--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 420
L L+ G+ DE ++GHP +F +GD + RPLP + VA QQ + +
Sbjct: 273 LGATLDRSGRVSVDEFCNIEGHPEVFVIGDIANYSKGLERPLPGVSPVAMQQGRYVAALI 332
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 480
+ ++ PFR+ + G M +GR DA + + G G A +L
Sbjct: 333 QGDLKNKKRKPFRYVDKGSMATIGRTDAVAQMGVLR---MKGLFGWFAWLFVHLFYQVGF 389
Query: 481 EHRLKVGVSWL 491
++++ + ++W+
Sbjct: 390 KNKITILITWV 400
>gi|389815644|ref|ZP_10206907.1| NADH dehydrogenase, FAD-containing subunit [Planococcus antarcticus
DSM 14505]
gi|388465850|gb|EIM08164.1| NADH dehydrogenase, FAD-containing subunit [Planococcus antarcticus
DSM 14505]
Length = 404
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 163/402 (40%), Gaps = 74/402 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K+P I +LG G+GGL T + L+ ++ D + L++++E L+E +G +
Sbjct: 2 KRPSILVLGAGYGGLTTVVNLQKVLSAD--AADITLINKNEYHYESTWLHEAAAGTLLPE 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
++ D++ + V+F + V + + V G T G YD++V+
Sbjct: 60 QVRYDIKDVIDSVKVKFVQATV------EAIDVVGKKVTTDNGEFT--------YDYIVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE--------RRNFERLEEKGIVQ 249
+LG E + + G ++A + ++ A R R+ E + ++ RL I+
Sbjct: 106 ALGFEGETFGIEGLDKYALSIANVK-AARYIREHIEFQFATWSAEPVKDDSRLT---IIV 161
Query: 250 AINVETTICPTGTPGNR--------------------EAALKVLSARKVQLVLGYFVRCI 289
T I G NR EAA VL +LV Y V +
Sbjct: 162 GGAGFTGIEFLGELANRVPELCKEFDVPREKVRVVCVEAAPMVLPGFDPELV-NYAVSNL 220
Query: 290 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 349
G E S+ P A P K D + +A V+W G +
Sbjct: 221 ESKG-IEFSIGTPVVEATPEGVKVKKGDDHF------------DFIKAGTVVWAAGVR-- 265
Query: 350 LPHVEPPNNRLHD-LPL-NARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATA 406
NRL + P+ N R + + D+ L G+ +F +GD + + + + RP P TA
Sbjct: 266 -------GNRLIEATPIENMRARVKVDKDLRAPGYDDVFIIGDCALMINEETNRPYPPTA 318
Query: 407 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
Q+A QQ + NL A +ND + F G + LG +DA
Sbjct: 319 QIAMQQGESVAKNLKALMNDETTIEFVPDLKGTVCSLGDDDA 360
>gi|317969257|ref|ZP_07970647.1| NADH dehydrogenase [Synechococcus sp. CB0205]
Length = 440
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 106/442 (23%), Positives = 171/442 (38%), Gaps = 64/442 (14%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ P + I+GGGF GL A L K +V L+D+ +F+P+LY++ SG V
Sbjct: 18 RSAPHVVIVGGGFAGLRAAHVLAG------KTVRVTLIDRRNFNLFQPLLYQVASGLVSQ 71
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A +L + +Q V + D ++ + YD L
Sbjct: 72 TDVASPLRVMLGESENIQILMGEVDDINTKDK--------------EVVFNNRRYRYDHL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELER-RNFERLEEKGIVQAINV 253
VL+ GA A P TLEDA + RK L+ LE E + +Q++
Sbjct: 118 VLAAGATSSYFGHDEWRSDAIPMKTLEDAYAIRRKVLNSLEEAEQTPDPERRKWLQSV-- 175
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG------AI 307
+ G P E L+A L+ R ++ V + G
Sbjct: 176 ---VVIGGGPTGCE-----LAASLNDLMRHTLERDFMQIDPTHCKVTLVDPGDRVLRAMD 227
Query: 308 PNIAADKNSD--------------KYILELQPAIKGLESQI-FEADLVLWTVG--SKPLL 350
P ++A K I E + I + ++ +A+ + WT G + PL
Sbjct: 228 PQLSASAGDHLKAKGVELLLGGRVKDISEGKVVITTKDGEVTLDANTICWTAGVAASPLG 287
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVA 409
+ L+ G+ + +KGH I +GD S G+PLP A A
Sbjct: 288 KLLAERTG----CELDRGGRVVVEPDFSIKGHGEIRVIGDLCSYSHTRDGKPLPGMAGPA 343
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
Q + ++ A +P F F + G M ++G A + + G+ L GP+G
Sbjct: 344 VQMGGWVAKDILAQCQSQPNPAFAFTDFGSMAVVGPLFAVAN---LRGLKLSGPLGWVLW 400
Query: 470 KLAYLIRLPTDEHRLKVGVSWL 491
LA+L +P +E RL + WL
Sbjct: 401 GLAHLAFMPANESRLTLLTKWL 422
>gi|421077121|ref|ZP_15538092.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans JBW45]
gi|392524509|gb|EIW47664.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans JBW45]
Length = 420
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 101/436 (23%), Positives = 177/436 (40%), Gaps = 63/436 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P I I+G GFGG+ TA L + ++ L+D+ +F+P+LY++ + +
Sbjct: 8 KPPHIVIIGAGFGGIRTARALAK------HEVKITLIDKYNYHLFQPLLYQVATAGLSVD 61
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA P A V F +L SD + + + + G + YD+LV
Sbjct: 62 DIAYPVRAIFRDQKNVDF-----RLAEVSD-VDFDNKVVTMNTGEI--------GYDYLV 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-RLEEKGIVQAINVET 255
++ G + + F TL+++ + + R FE EK + + T
Sbjct: 108 IAAGGSTNYFGMESMEKNGFGMKTLDESVMIRNHVL----RMFELAAHEKDADKRRALLT 163
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES-----GAIPNI 310
+ G P E+A LS +L+ V+ + E + E+ +P
Sbjct: 164 FVIVGGGPTGVESA-GALS----ELIYHVMVKEYHNMNFKEVRIMLVEASDKLFATMPKE 218
Query: 311 AADKNSDKYI---LELQPAIKGLE----------SQIFEADLVLWTVGSKPLLPHVEPPN 357
D + I +E++ ++ + ++ V+W G K N
Sbjct: 219 LRDATVETLIRKHVEVRLCVQVTDYNGEKMSLKGGEVIPTYTVVWAAGVKA--------N 270
Query: 358 NRLHDLPLN--ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ L L + + +A +E L + P +F +GDS+ RPLP A VA QQA+
Sbjct: 271 SLLDTLKVEQASMRRAIVNEFLQLPNRPEVFVIGDSAQFIQGE-RPLPMVAPVAIQQAEV 329
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
A N+ + I + L F ++++G M +GRN A V G I + +++
Sbjct: 330 AAKNIRSLIRGKELKKFTYRDVGNMATIGRNAAVVHMG---NFKTHGFIAWAIWSFVHIL 386
Query: 476 RLPTDEHRLKVGVSWL 491
RL +R V V W+
Sbjct: 387 RLIDFRNRAVVFVKWM 402
>gi|134097458|ref|YP_001103119.1| NADH dehydrogenase [Saccharopolyspora erythraea NRRL 2338]
gi|291004549|ref|ZP_06562522.1| NADH dehydrogenase [Saccharopolyspora erythraea NRRL 2338]
gi|133910081|emb|CAM00193.1| NADH dehydrogenase [Saccharopolyspora erythraea NRRL 2338]
Length = 440
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 101/434 (23%), Positives = 169/434 (38%), Gaps = 55/434 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI ILGGG+ G+YTAL L+ + + ++ V +VD ++P L E +G V+ +
Sbjct: 9 RILILGGGYVGMYTALHLQKKLGR--REASVTVVDPQPHMTYQPFLPEAAAGSVEPRHVV 66
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDH-LGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L V V + SD + VN P + +EYD LV++L
Sbjct: 67 APLRRVLKRCHV--ITAAVTEINNSDKVVTVNNPQTGSE----------TLEYDLLVVAL 114
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDAC----RVDRKLSELERRNFERLEEKGIVQAINVET 255
G+ +L +PG AE T+ +A V K+ + E L ++ +
Sbjct: 115 GSVSRLLPIPGLAEQGISLKTVGEAIYLRNHVLAKMDAAANTDDEELRKRLLT------F 168
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFV------RCIRRVGEFEASVKQPESGAIPN 309
T G G A AR + G V + +
Sbjct: 169 TFVGGGFAGGEALAELEDMARYATRYYSNITPEDMSWVLVEAAGRVMPEVSEKMGVYVVK 228
Query: 310 IAADKNSDKYILELQPAIKGLESQI-----FEADLVLWTVGSK--PLLPHVEPPNNRLHD 362
++ Y+ +++G + + F+ D ++W G K P+L + D
Sbjct: 229 ALEERGIKVYLNTFLKSVEGGHAVLSDGTEFDTDTLVWNAGVKANPVLKN--------SD 280
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT------AQVAFQQADFA 416
LPL+ RG+ L V+G ++A GD SA+ D S T AQ A +QAD
Sbjct: 281 LPLDERGRIRATAHLQVEGVSNVWAAGDCSAVPDLSKTEDDPTATCAPSAQHAVRQADQL 340
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
N+ A++ + ++ G + LG V G G I + ++ R
Sbjct: 341 AKNVLASMRGKATKEYKHAYAGSVAGLGLYKGVAD---VYGFKAKGFIAWFMHRSYHVSR 397
Query: 477 LPTDEHRLKVGVSW 490
+PT +L++ + W
Sbjct: 398 MPTFNRKLRIIIDW 411
>gi|416069205|ref|ZP_11583192.1| Ndh protein [Aggregatibacter actinomycetemcomitans serotype f str.
D18P1]
gi|348000420|gb|EGY41206.1| Ndh protein [Aggregatibacter actinomycetemcomitans serotype f str.
D18P1]
Length = 445
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 163/392 (41%), Gaps = 50/392 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ V L+D+++ ++KP+L+EL +G +D A + N F + + L
Sbjct: 28 KRANVTLIDRNQTHLWKPLLHELATGALDDGVEALSYRAHACNHHFNFEQGSMVGLNRQH 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G +++ + YD+LV+++G++ G AE A R
Sbjct: 88 KYVELAPVYGEDGDMIVVSRR--IPYDYLVIAIGSKSNDFNTKGVAENCIFLDNPSQAMR 145
Query: 227 VDRKLSEL--ERRNFERLEEKG-------IVQAINVETTICPTGTPGNREAALKVLSARK 277
K+ EL + R + L++ G +V+ ++ I G G E + ++ +A +
Sbjct: 146 FQHKMLELFLKFRENQALDDIGEEESKQQLVEDGHINIAIVGAGATG-VELSAELYNAAE 204
Query: 278 VQLVLGYFVRCIRRVGEFEAS---VKQPESG-----AIP------------NIAADKNSD 317
GY G+ ++S + E+G A+P + D ++
Sbjct: 205 HLSSYGY--------GQIDSSRLKITLVEAGPRILPALPERISNDATEELRKLGVDVKTN 256
Query: 318 KYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 376
I+E + + + Q+ ADL++W+ G + L +N Q +T
Sbjct: 257 TMIVEAKKKQLVTKDGQLIPADLIVWSAGIR-----TSAITKNFDGLEINRINQLVVKKT 311
Query: 377 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 436
L IFA+GD L G+P+P AQ A Q A N+ + +++PL F + +
Sbjct: 312 LQTTNDSTIFAMGDCCFLMQDDGKPVPPKAQAAHQMASLCAKNMVSLFDNKPLKDFEYND 371
Query: 437 LGEMMILGRNDA--AVSPSFVEG--VTLDGPI 464
G ++ L A A+S G +T++G I
Sbjct: 372 KGSLVSLSEFTAFGALSGKITGGSSMTIEGKI 403
>gi|189022903|ref|YP_001932644.1| NADH dehydrogenase [Brucella abortus S19]
gi|237817201|ref|ZP_04596193.1| NADH dehydrogenase [Brucella abortus str. 2308 A]
gi|297249697|ref|ZP_06933398.1| NADH dehydrogenase [Brucella abortus bv. 5 str. B3196]
gi|376271297|ref|YP_005114342.1| NADH dehydrogenase [Brucella abortus A13334]
gi|189021477|gb|ACD74198.1| NADH dehydrogenase [Brucella abortus S19]
gi|237788014|gb|EEP62230.1| NADH dehydrogenase [Brucella abortus str. 2308 A]
gi|297173566|gb|EFH32930.1| NADH dehydrogenase [Brucella abortus bv. 5 str. B3196]
gi|363402469|gb|AEW19438.1| NADH dehydrogenase [Brucella abortus A13334]
Length = 441
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 113/429 (26%), Positives = 179/429 (41%), Gaps = 51/429 (11%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I ++G GF GL L D K ++ L+DQ +F+P+LY++ + + EI
Sbjct: 24 PHIVVVGAGFCGLQLIRDL------DGAKVRITLIDQRNHHLFQPLLYQVATTILSTSEI 77
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A +L F+DR ++ + LG + T +V LE+G V YD LVL+
Sbjct: 78 AWPIRNL--------FRDRAEV---TTLLGTVIDVD-TARKSVFLENGDEVSYDMLVLAT 125
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
GA + A LEDA + R+ L ER + QA+ + +I
Sbjct: 126 GARHAYFGNDQWEKLAPGLKALEDATTI-RRRLLLAFERAEREPDMARRQAL-LTFSIVG 183
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG-----AIP---NIA 311
G G A + AR+ R + +A V E+G A P +
Sbjct: 184 GGPTGVELAGIIAELARRT------LWPEFRNIDTRQARVLLLEAGPRILSAFPEDLSAY 237
Query: 312 ADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE----PPNNRLHDLPLNA 367
A + +K +E++ G+ + + V TVG + + H L L+A
Sbjct: 238 ARRALEKLGVEVR---LGIPVKDITQEGV--TVGDEFIPCHTTVWAAGVAASPAALWLDA 292
Query: 368 R----GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
G+ + L V GH IFA+GD++ + GRP+P A A QQ + + +
Sbjct: 293 ESDRAGRVKVLSNLSVPGHEDIFAIGDTAWVEGDDGRPVPGIAPAAKQQGAYVAKVIRSR 352
Query: 424 I-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEH 482
+ N P LPFR+++ G + +G+ A V + L G I +A++ L
Sbjct: 353 VENKTPPLPFRYKHQGNLATIGKGAAVVDMGRIR---LKGTIAWWFWGIAHIFFLIGTRS 409
Query: 483 RLKVGVSWL 491
R V SWL
Sbjct: 410 RAAVAWSWL 418
>gi|398858148|ref|ZP_10613841.1| NADH dehydrogenase, FAD-containing subunit [Pseudomonas sp. GM79]
gi|398239781|gb|EJN25484.1| NADH dehydrogenase, FAD-containing subunit [Pseudomonas sp. GM79]
Length = 434
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 176/431 (40%), Gaps = 60/431 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G GFGGL A L K +V LVD+S +F+P+LY++ + + +IA
Sbjct: 6 RIVIVGTGFGGLAAAKALAG------KACEVTLVDRSNHHLFQPLLYQVATAMLSPADIA 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
++ ++ V +GV+ +L ++ + YD+L+L+ G
Sbjct: 60 TATRTIIRAQNLRIVMAEV--------IGVD-----VSKKRLLTKTNDDLPYDYLILATG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEE-KGIVQAINVETTICP 259
A+ A A +LEDA + KL NFE+ E K + + N+ T I
Sbjct: 107 ADYSFFGNDEWALHAPVLKSLEDALTIREKLLS----NFEQAERSKDVARIQNLLTFIVV 162
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 319
P E A V K L R + + + E+G+ A + Y
Sbjct: 163 GAGPTGVEMAGAVAELAKTALT-----RDFKSIDTKHLRILLVEAGSTALSAFPEGLSSY 217
Query: 320 ILEL-----------QPAIKGLESQIF------EADLVLWTVGS--KPLLPHVEPPNNRL 360
++ +P +S I ++ V+W G+ +P + R
Sbjct: 218 AVQALRTLGVEVHLGRPVKTITDSGIMLGNTWIASNSVIWCAGTQARPAATWIGAKAARN 277
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 420
+ +N + V G+P IFA+GD + + RPLP A VA QQ + +
Sbjct: 278 KAIIVN--------DDCSVPGNPEIFAIGDVACYQAGLNRPLPGIAPVAKQQGAYVAKAI 329
Query: 421 WAAINDRPLL-PFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
A I +P + PF+++N G M ++GR+ A + L G G A L +L+ L
Sbjct: 330 LARIQGKPRVSPFKYRNWGTMAVIGRSHAVAD---FGKIRLKGFTGWLAWSLVHLLLLID 386
Query: 480 DEHRLKVGVSW 490
R V ++W
Sbjct: 387 FRSRTSVYLNW 397
>gi|381399022|ref|ZP_09924293.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Microbacterium laevaniformans OR221]
gi|380773766|gb|EIC07199.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Microbacterium laevaniformans OR221]
Length = 489
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 109/437 (24%), Positives = 174/437 (39%), Gaps = 56/437 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I I+GGG+ G YTA +LE + + + +V +VD ++P L E+ +GE++A +
Sbjct: 14 PKILIVGGGYAGFYTAWKLEKHLRKGEA--EVTIVDPLPYMTYQPFLPEVAAGEIEARHV 71
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVL 197
L T V K V G T T+ G YD +V+
Sbjct: 72 IVGLRRHLKKTRVVTAK-------------VTGIDHATRTATITPAEGEPWQENYDQIVV 118
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERL-------EEKGIVQ 249
+ GA + +PG AE A T+E+A V DR L+ NF+R E ++
Sbjct: 119 TAGAVSRTFPIPGIAENAIGLKTIEEAVAVRDRILT-----NFDRAANLPAGPERDRLLT 173
Query: 250 AINVETTICPTGTPGNREAALKVLSARKVQLVLG----YFVRCIRRVGEFEASVKQPESG 305
+ V A L QL + V + R+ E S+K E
Sbjct: 174 VVVVGGGFAGIEVFAETRALASSLLKDYPQLRFEDTHFHLVEAMGRIMP-EVSLKTSEW- 231
Query: 306 AIPNIAADKNSDKYILELQPAIKG----LESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
+ ++A + ++ A+ G ++ DL++WT G P R
Sbjct: 232 VLKDLAKRGANVHLDTQVTGAVDGNVELSTGEVIPTDLIIWTAGVM-----ANPTVVRGS 286
Query: 362 DLPLNARGQAETDETLCVKGHPRI----FALGDSSALRDSSGRPLPA----TAQVAFQQA 413
DLP+ RG+ T L V + +A GD SA+ D +G+ + AQ A +QA
Sbjct: 287 DLPVEERGRIRTRADLRVGTADEVVEGAWAAGDVSAVPDLTGKGVGGYCVPNAQHAVRQA 346
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAY 473
NL A + D + NLG + LG + + L G I A + +
Sbjct: 347 KLLAKNLVAVLRDELPREYIHHNLGAVAGLGLYNGVFQS---RNIALKGFIAWCAHRGYH 403
Query: 474 LIRLPTDEHRLKVGVSW 490
+ +P+ E + +V W
Sbjct: 404 GLAMPSWERKWRVIGDW 420
>gi|389693481|ref|ZP_10181575.1| NADH dehydrogenase, FAD-containing subunit [Microvirga sp. WSM3557]
gi|388586867|gb|EIM27160.1| NADH dehydrogenase, FAD-containing subunit [Microvirga sp. WSM3557]
Length = 453
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/428 (22%), Positives = 178/428 (41%), Gaps = 46/428 (10%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDA 136
++P++ I+G GFGGL A L + P V ++D+ F+P+LY++ + +
Sbjct: 4 RRPKVVIVGAGFGGLTAAQSLA-------RAPVDVTIIDRHNFHYFQPLLYQVATAALSP 56
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA +L + + + +D G++ G+ L + YD+LV
Sbjct: 57 ADIAWPIRGILR-------RQKNATVFLADVTGIDAQARMVQAGS------LSIPYDYLV 103
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL---SELERRNFERLEEKGIVQAINV 253
L+ GA P A A +EDA + RK+ E + E++ ++ + V
Sbjct: 104 LATGATHSYFGHPEWASVAPGLKQIEDATVIRRKILLAFEHAELTDDANEQRRLLTFVVV 163
Query: 254 ETTICPTGTPGN-REAALKVLSARKVQLVLGYFVRCI------RRVGEFEASVKQPESGA 306
G E A LSA + + + + R I R + F + +
Sbjct: 164 GGGPTGVEMAGAIAEVAHHALSA-EFRRIDPHSARVILIEAGPRLLPAFPEDLAAYAQTS 222
Query: 307 IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNRLHDLP 364
+ + + ++ + + A LE A V+W G + P + ++R +
Sbjct: 223 LERMGVEVRTNARVTDCTEAGVDLEETQIAAGTVIWAAGVVASPAAEWLGAEHDRAERI- 281
Query: 365 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 424
+ + L V G IFA+GD++++ DS G+ +P A A Q + + A +
Sbjct: 282 -------KVEPNLKVPGRSEIFAIGDTASVVDSDGKTVPGIAPAAKQMGRYVARVIAAEV 334
Query: 425 NDRPLL-PFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHR 483
+ PFR+++ G++ +GR A V ++ + L G IG +A++ L +R
Sbjct: 335 EKKTSPGPFRYRHQGDLATIGRKSAVVK---LDSIHLTGFIGWLFWGIAHVYFLIGLRNR 391
Query: 484 LKVGVSWL 491
V +WL
Sbjct: 392 AVVAFTWL 399
>gi|455651121|gb|EMF29873.1| dehydrogenase [Streptomyces gancidicus BKS 13-15]
Length = 490
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 108/431 (25%), Positives = 182/431 (42%), Gaps = 51/431 (11%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF 143
I+G GF G TA ++L + + +++L++ ++ F++ P+L ++ +G ++ +
Sbjct: 2 IVGAGFAGYRTA---QTLSREAKGRAEIVLLNPTDYFLYLPLLPQVAAGILEPRRVTVSL 58
Query: 144 ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMAC----THGGTVLLESGLIVEYDWLVLSL 199
+ L + VKL+ LG G + H E G + YD LVL+
Sbjct: 59 SGTLPH---------VKLV-----LGEAGRIDLDAREVHYTDPEGEDGTL-SYDRLVLTA 103
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETTIC 258
G+ KL +PG AE A F L +A + D ++E E+ + V +
Sbjct: 104 GSVNKLLPIPGVAEHAHGFRGLPEALYLRDHVTRQVELAAATDDPERCASRCTFV---VV 160
Query: 259 PTGTPGNREAALKVL----SARKVQLVLGYFVRCI------RRVGEFEASVKQPESGAIP 308
G G AA L K L G R I R + E + + + +
Sbjct: 161 GAGYTGTEVAAHGQLFTDAQVAKQPLRTGMRPRWILLDIAERVLPELDERLSRTADTVLR 220
Query: 309 NIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA 367
D + E P + + + E ++W VG +P +P L LP+
Sbjct: 221 ERGVDVRMGTSVKEATPDGVLLTDGEFVETRTLVWCVGVRP-----DPLAESL-GLPME- 273
Query: 368 RGQAETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNLWAAIN 425
RG+ D L V G P +FA GD++A+ D G P TAQ A++Q N+ A+
Sbjct: 274 RGRLLVDPHLQVPGRPEVFACGDAAAVPDLEKPGSYTPMTAQHAWRQGKVCARNIAASFG 333
Query: 426 DRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLK 485
D +R ++LG ++ LG AA +P GV L G + + +L +P + R++
Sbjct: 334 DGERKAYRHKDLGFVVDLGGVKAAANPL---GVNLSGIAASAVTRGYHLAAMPGN--RVR 388
Query: 486 VGVSWLTKSAI 496
V WL + +
Sbjct: 389 VAADWLLDAVL 399
>gi|345003265|ref|YP_004806119.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces sp. SirexAA-E]
gi|344318891|gb|AEN13579.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces sp. SirexAA-E]
Length = 404
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 144/347 (41%), Gaps = 55/347 (15%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V +VD ERF + L+ +G+ A P LL TG +F + V +
Sbjct: 45 VTVVDAQERFTERLRLHMTATGQQLAELSVP---ALLEGTGARFVRGWVTSVDADAR--- 98
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
TV L+ + YD LV +LG VPGA E A+ + +DA +
Sbjct: 99 ----------TVRLDDERCLCYDTLVYALGGVADTAAVPGAGEHAYTLNGTQDA----QV 144
Query: 231 LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 290
L+E +RL +V +C G G AA ++ +VL
Sbjct: 145 LAE----RLDRLGGGTVV--------VCGNGPTGIEAAAEIAERHPELGVVL-------- 184
Query: 291 RVGEFE-ASVKQPESGAIPNIAADK-----NSDKYILELQP-AIKGLESQIFEADLVLWT 343
+G E + P +GA A D+ ++ ++P A++ + AD+VLW
Sbjct: 185 -LGRREPGTALHPRAGAYLRGALDRLGVQVRGGTTVVGIRPGAVETADGGSIAADVVLWA 243
Query: 344 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 403
G++ P L ++ARG+ TDETL HP+++A+GD++A+R G +
Sbjct: 244 GGTR------VSPIAAAAGLAVDARGRVVTDETLRSVSHPQVYAVGDAAAIRQGYG-VMH 296
Query: 404 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
T Q A ++ A+ + PFRF + LGR+D V
Sbjct: 297 GTCQGGMPSGVHAAVSIVRALRGKQPKPFRFGYYHTPVSLGRHDGVV 343
>gi|392560322|gb|EIW53505.1| FAD/NAD-P-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 481
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 114/449 (25%), Positives = 180/449 (40%), Gaps = 78/449 (17%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P + K R+ ILG G+GG Y LR D K+ V++V S F F P+L G +
Sbjct: 28 PARGKQRLVILGSGWGG-YEILRA-----IDKKRWNVVMVSPSNYFNFTPLLASCAVGTL 81
Query: 135 D-------AWEIAPRFADLLANTGVQFFKDRVKLLC-----PSDHLGVNGPMACT---HG 179
+ + P A FK + KL+C P + G + T
Sbjct: 82 EFRAAVEPVRKYTPEVIAYTAWCDSIDFKHK-KLVCMPATSPVNFSEPGGSASNTDPNES 140
Query: 180 GTVLLESG--LIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELER 236
+ + S + YD LV+++GA + VPG E A+ + DA R+ R L E+
Sbjct: 141 ASAVAGSSQKFQLTYDKLVIAVGAYSQTFNVPGVKEHAYFLKDISDARRIRTRVLDCFEQ 200
Query: 237 RNFERLEEKGIVQAINVETTICPTGT-PGNREAALKVLS-------------ARKVQLVL 282
N + + + +N C G P E A ++ AR ++ L
Sbjct: 201 ANQPTITDADRRKLLN----FCIVGGGPTGVEFAAELHDFLHTDIARHYPALARMAKINL 256
Query: 283 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD--LV 340
I +G F+ +++ + + ++ ++ + L ++ E + L+
Sbjct: 257 YDVAPSI--LGGFDTGLQEYATSKFKREGIRLLTQHHVQRVEQG-RMLVTEEGEVNFGLL 313
Query: 341 LWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGH------------PRIFAL 388
+W+ G P N L D A+ T TL GH P +FA+
Sbjct: 314 VWSTGLAP---------NPLIDSITEAKKDERTKRTLITDGHLNVVLKDTDAVDPDVFAI 364
Query: 389 GDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR--PLLPFRFQNLGEMMILGRN 446
GD++ + D PLPATAQVA QQA + L A + DR PF+FQN G + +G
Sbjct: 365 GDAATVVDE---PLPATAQVANQQAKYLTRRLNALVRDRTPSKAPFKFQNAGSLAYVGDW 421
Query: 447 DAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
+A F GP +LA+L+
Sbjct: 422 EAV----FDRTKAARGPKNKETGRLAWLL 446
>gi|359784857|ref|ZP_09288021.1| NADH dehydrogenase [Halomonas sp. GFAJ-1]
gi|359297773|gb|EHK61997.1| NADH dehydrogenase [Halomonas sp. GFAJ-1]
Length = 432
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 109/447 (24%), Positives = 185/447 (41%), Gaps = 68/447 (15%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGG GGL A RL + + K+ +++L+D++ V+KP+L+EL +G +++
Sbjct: 4 PRIVIVGGGAGGLALATRLGQTLGKK-KRAEIVLLDRNATHVWKPLLHELATGALNS--- 59
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV------EYD 193
+ D ++ ++ + L G++ H +L E+G V YD
Sbjct: 60 SMDEVDYRGHSSAHHYRYQRGSLD-----GLDREKKVIHLSPILDENGEEVLPARELTYD 114
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINV 253
+LVL+LG+ G AE + + A + F R + + Q +
Sbjct: 115 YLVLALGSVSNDFGTEGVAEHCHFMDSPQQAKAFQHHMIN----TFLRYTDPSLRQHTQL 170
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI---------------------RRV 292
I G G E + ++L A + L+ Y V + R+
Sbjct: 171 TIGIVGGGATG-VELSAELLDASR--LLNAYGVTALDHQNISVHLIEGAPRLLPALSERI 227
Query: 293 GEFEASVKQPESGAIPNIAAD---KNSDKYILELQPAIKGLESQIFEADLVLWTVGSK-- 347
G +V+Q ++ + K + +Y L + + E DL +W G K
Sbjct: 228 G---LTVQQELESMGVHVHVNTTIKQAQQYQLITD------DGDVIETDLNVWAAGIKAP 278
Query: 348 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 407
P L + L N + Q + +TL P IFA+GD ++ +P AQ
Sbjct: 279 PFLAEI--------GLTTNKKNQIQVAQTLQSVDDPHIFAMGDCASCPQGEDSTVPPRAQ 330
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA---VSPSFVEGVTLDGPI 464
A QQA NL A+ +PL PF +++ G ++ L R DA + S G+ L+G +
Sbjct: 331 AAHQQAKLLAKNLVNALESKPLKPFIYRDHGSLVSLARYDAVGNLMRSSASRGLFLEGWL 390
Query: 465 GHSARKLAYLIRLPTDEHRLKVGVSWL 491
A Y + + K G++WL
Sbjct: 391 ARQAYASLYRMHQLSIHGAPKTGLAWL 417
>gi|256389844|ref|YP_003111408.1| NADH dehydrogenase [Catenulispora acidiphila DSM 44928]
gi|256356070|gb|ACU69567.1| NADH dehydrogenase [Catenulispora acidiphila DSM 44928]
Length = 462
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 107/447 (23%), Positives = 186/447 (41%), Gaps = 69/447 (15%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+P+I +LG GF G A +LE + DD ++ LV ++ P+L + SG +
Sbjct: 3 RPKILVLGSGFAGTECAHKLEKKLSIDDA--EIRLVTPVNHQLYLPLLPHVASGVLTPQA 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVL---LESGLIVE-YDW 194
+A +L T L+ P +G++ T +V+ ++ +VE YD+
Sbjct: 61 VAVSLRRMLKRT----------LVIPGGAIGID-----TQTKSVVVRKIDGQEVVERYDY 105
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINV 253
L+L+ G+ + +PG ++A TL +A + D +++L + + + + +
Sbjct: 106 LILTPGSVTRQFNIPGVDKYAVGVKTLAEAAWIRDHVIAQL---DLAAVADTDAERESRL 162
Query: 254 ETTICPTGTPGNREAA-LKVLSARKVQ--------LVLGYFVRCIRRVGEFEASVKQPES 304
+ + G G AA L+ L+ V+ LV + V R+ PE
Sbjct: 163 QFVVVGGGYAGTETAAYLQRLTTEAVKRYPNLDGSLVKWHLVDIAPRL--------MPEL 214
Query: 305 GAIPNIAADKNSDKYILELQPAIKGLE----------SQIFEADLVLWTVG--SKPLLPH 352
G A K K L + + E ++ ++WT G PL+
Sbjct: 215 GEKLGEKALKILRKRGLHVSLGVSVAECTEDTVTLTDGRVLPCRTLIWTAGVAPSPLIAT 274
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD--SSGRPL-PATAQVA 409
+ P NR G+ + L V P +FALGD++A+ D G + P TAQ A
Sbjct: 275 MGAPTNR---------GRLVVNADLTVPDLPGVFALGDAAAVPDLAKGGDAICPPTAQHA 325
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
+Q A N+ +A+ PL + ++LG ++ LG A P G+ L G
Sbjct: 326 MRQGWAAAENVMSAVRGFPLKDYHHKDLGLVVDLGGLKAVSKPL---GIPLSGLPAQIVA 382
Query: 470 KLAYLIRLPTDEHRLKVGVSWLTKSAI 496
+ +++ L T R + G WL S +
Sbjct: 383 RGYHIMALRTFAARFRTGAGWLLNSLV 409
>gi|385681137|ref|ZP_10055065.1| NADH dehydrogenase, FAD-containing subunit [Amycolatopsis sp. ATCC
39116]
Length = 441
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 105/395 (26%), Positives = 160/395 (40%), Gaps = 57/395 (14%)
Query: 77 KKKP-RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
K +P RI ILGGG+ GLYTAL L+ + ++ V +VD ++P L E +G ++
Sbjct: 5 KSEPTRILILGGGYVGLYTALGLQKKLRANEA--SVTIVDPQPHMTYQPFLPEAAAGAIE 62
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI--VEYD 193
PR V RV C VN TV G I + YD
Sbjct: 63 -----PRH--------VVVPLRRVLKRCHVLTARVNKIEHERKTVTVEAADGHIEQLNYD 109
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINV 253
LV++LGA P+L +PG AE T+ +A L +L+E +
Sbjct: 110 VLVVALGAVPRLLPIPGLAEEGIGIKTIGEAIY-------LRNHVLTKLDEAASTLDPEL 162
Query: 254 ETTICPTGTPGNREAALKVLSARK--VQLVLGYFVRC----IRRVGEFEASVKQPESGAI 307
+ G A ++ L+ + + Y+ IR V A PE
Sbjct: 163 RKRLLTFTVVGGGFAGIEALAELEDMTRFATRYYENIQPEDIRWVLVEAAGRILPEVRET 222
Query: 308 PNIAADKNSDKYILE--LQPAIKGLES--------QIFEADLVLWTVGSK--PLLPHVEP 355
+ + +K +E L A K E+ F++D ++WT G K P+L +
Sbjct: 223 LGVWTVEQLEKRGIEVYLSTAAKSFENGRVVLSDGTEFDSDTIIWTAGVKANPVLAN--- 279
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS------GRPLPATAQVA 409
DLP++ RG+ E L V GHP ++ GD++A+ D S P AQ A
Sbjct: 280 -----SDLPIDKRGRVEATAALQVVGHPDVWTAGDNAAVPDLSRTESDPTATCPPNAQHA 334
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
+QA N+ + + + +NLG + LG
Sbjct: 335 VRQARHLAKNIIKTLRGGQPVDYFHKNLGAVAGLG 369
>gi|390942738|ref|YP_006406499.1| NADH dehydrogenase, FAD-containing subunit [Belliella baltica DSM
15883]
gi|390416166|gb|AFL83744.1| NADH dehydrogenase, FAD-containing subunit [Belliella baltica DSM
15883]
Length = 442
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 99/413 (23%), Positives = 171/413 (41%), Gaps = 76/413 (18%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P + RI I+G GF GL A +L +Q VLL+D++ F+P+ Y++ + +
Sbjct: 13 PPIESKRIVIIGAGFAGLKLARKLIGSSYQ------VLLLDKNNYHQFQPLFYQVATSGL 66
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+ I+ + N+ F+ + ++ + T+ G V +YD+
Sbjct: 67 EPSAISFPLRKVFHNSKNIIFR-----MAIAEKIDQKANRLYTNVGYV--------DYDY 113
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINV- 253
LVL++GA+ + + + P T+ +A + K+ N+E AIN+
Sbjct: 114 LVLAMGADTNYFGLENIEKHSIPMKTVSEALFIRNKIIS----NYE--------TAINIG 161
Query: 254 --------ETTICPTGTPGNREAALKV--------------LSARKVQLVL----GYFVR 287
+ G P E A V L+ + +++VL + +
Sbjct: 162 KENERKPIMNVVIVGGGPTGVELAGAVAELRNNVFPKDYPELNFKNMKVVLIEAGTHLLL 221
Query: 288 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL---QPAIKGLESQIFEADLVLWTV 344
+ + +A + G I +D +L+ + +KG ES E +LW
Sbjct: 222 SMSEQAKTKARTYLEKLGVIVM------TDTQVLDYDGNKVDLKGKES--IETKTLLWAA 273
Query: 345 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLP 403
G K H+E LP G+ +E +K IFALGD + ++ + R P
Sbjct: 274 GIKA--NHIEGVIEG-QTLP---NGRMIVNEFNRLKESENIFALGDIAISITEKFERGHP 327
Query: 404 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 456
AQVA QQAD NL A ++P F++++LG M +GR A V F++
Sbjct: 328 QVAQVALQQADNLANNLLAEKRNKPWKRFKYKDLGSMATIGRKLAVVDLPFIK 380
>gi|383807703|ref|ZP_09963263.1| NADH dehydrogenase, FAD-containing subunit [Candidatus Aquiluna sp.
IMCC13023]
gi|383299057|gb|EIC91672.1| NADH dehydrogenase, FAD-containing subunit [Candidatus Aquiluna sp.
IMCC13023]
Length = 463
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 108/440 (24%), Positives = 183/440 (41%), Gaps = 54/440 (12%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K K +I I+GGG+ G YTA +LE ++ +++ ++ LVD ++P L E+ +G ++
Sbjct: 22 KPKQQILIIGGGYAGFYTAWKLEKILGKNE--AEITLVDPLPYMTYQPFLPEVAAGSIEP 79
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDW 194
+ L T L VN + TV + G ++EYD
Sbjct: 80 RHVIVSHRQHLRKT----------TLISGSMTKVNHKL---KKATVKVPGGKNRVLEYDQ 126
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEE--KGIVQAIN 252
++++ GA + + G AE A T+E+A + ++ NFER K
Sbjct: 127 IIMTAGAVTRTFPIKGVAEEAIGIKTVEEAVEIRNRMVG----NFERAAALPKNSKTRRR 182
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE----ASVKQPESG--- 305
+ TT+ G EA ++LSA ++ Y+ + EF A PE
Sbjct: 183 LLTTVVVGGGFAGVEAFAELLSA--ATSLVRYYPQIDFEEIEFHLVEAAGRIMPEVSLKT 240
Query: 306 ---AIPNIAADKNSDKYILELQPAIKGLES----QIFEADLVLWTVG--SKPLLPHVEPP 356
I N+ +L A KGL + + E+DL++WT G + P++ + + P
Sbjct: 241 SLWVIANLEKRNAKVHLNTQLLSADKGLVTLSTGESMESDLIIWTAGVAAAPIVKNCDFP 300
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA----TAQVAFQQ 412
+ + N + Q D +KG + GD +A+ D+SG + AQ A +Q
Sbjct: 301 LDDRFRISANTKLQI-VDGKKVIKG---AWTAGDVAAVPDTSGGGVGGYCVPNAQHAVRQ 356
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG-VTLDGPIGHSARKL 471
A N+ I + +NLG + LG F G + L G I A +
Sbjct: 357 AKLLAKNIVGDIRGESPHEYHHKNLGAVAGLGIGVGV----FQSGKIGLTGFIAWIAHRG 412
Query: 472 AYLIRLPTDEHRLKVGVSWL 491
+ + +PT E +++V W
Sbjct: 413 YHGLAMPTWERKIRVVSGWF 432
>gi|307727580|ref|YP_003910793.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia sp. CCGE1003]
gi|307588105|gb|ADN61502.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Burkholderia sp. CCGE1003]
Length = 430
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 99/382 (25%), Positives = 159/382 (41%), Gaps = 42/382 (10%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG G+ A RL + + + V L+D S ++KPML+ + +G D +
Sbjct: 6 RIVIVGGGIAGILLATRLGNH-FAHSHEASVTLIDSSPTHIWKPMLHTIAAGTRD---VK 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHL--GVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ LA+ F + +C D V T G ++LE+ V YD LVLS
Sbjct: 62 QQQVSYLAHASAHRFAWQAGEMCGLDRQRKEVLLNKVRTPEGELVLEA-RTVPYDVLVLS 120
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG+ VPG + + + A + S L R + +V+ + I
Sbjct: 121 LGSRANDFGVPGVRQQCHFIDSQQQAEAFN---SVLRARML-----RAVVRDERLRVAIV 172
Query: 259 PTGTPGNREAALKVLSARKVQLVLGY-------------FVRCIRRVGEFEASVKQPESG 305
G G AA +R +++ GY R + F ++
Sbjct: 173 GAGATGVELAAEL---SRVLEIAQGYGDPTLRSRLSLTLLESGPRVLASFPPAISASTQQ 229
Query: 306 AIPNIAADK-NSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHD 362
+ +I S + Q + E+ + +ADL++W G V+ P+ L
Sbjct: 230 QLEHIGFRVLTSARVTAAQQDGFRHGENLLAKADLMVWAAG-------VKAPDFMRELAG 282
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPATAQVAFQQADFAGWNLW 421
L N Q D TL R+FA+GD ++L ++ RPLP TAQVA QQA+ +L
Sbjct: 283 LETNRSNQIVIDATLQSTRDERVFAVGDCASLTPANHERPLPPTAQVATQQAEHLARHLP 342
Query: 422 AAINDRPLLPFRFQNLGEMMIL 443
+ P+ F F++ G ++ L
Sbjct: 343 GWLAGVPMPEFAFRDFGSLVSL 364
>gi|282853202|ref|ZP_06262539.1| pyridine nucleotide-disulphide oxidoreductase [Propionibacterium
acnes J139]
gi|386070693|ref|YP_005985589.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes ATCC 11828]
gi|422389583|ref|ZP_16469680.1| NADH dehydrogenase [Propionibacterium acnes HL103PA1]
gi|422457940|ref|ZP_16534598.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL050PA2]
gi|422463608|ref|ZP_16540221.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL060PA1]
gi|422466751|ref|ZP_16543313.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA4]
gi|422468484|ref|ZP_16545015.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA3]
gi|422565925|ref|ZP_16641564.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL082PA2]
gi|422576706|ref|ZP_16652243.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL001PA1]
gi|282582655|gb|EFB88035.1| pyridine nucleotide-disulphide oxidoreductase [Propionibacterium
acnes J139]
gi|314922488|gb|EFS86319.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL001PA1]
gi|314965567|gb|EFT09666.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL082PA2]
gi|314982727|gb|EFT26819.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA3]
gi|315091383|gb|EFT63359.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL110PA4]
gi|315094318|gb|EFT66294.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL060PA1]
gi|315105040|gb|EFT77016.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes HL050PA2]
gi|327329110|gb|EGE70870.1| NADH dehydrogenase [Propionibacterium acnes HL103PA1]
gi|353455059|gb|AER05578.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
acnes ATCC 11828]
Length = 460
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 145/355 (40%), Gaps = 39/355 (10%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ F+P+LY++ +G ++ ++ R A+ G P H
Sbjct: 51 VTLIDRNPYTTFQPLLYQVATGGLNPGDVTYRLRSFAAHNG------------PHTHF-- 96
Query: 171 NGPMACTHG-----GTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
AC G V +++G + YD+LVLS G PGAAE ++ T +
Sbjct: 97 --RRACVTGIDTENRIVEVDNGDPISYDYLVLSQGVGANFFGTPGAAENSYTIYTRASSL 154
Query: 226 RV-DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNRE-----AALKVLSARKVQ 279
R D + LE + +R + ++ T + GT + A +S +V
Sbjct: 155 RARDAIFTYLEDLDTQRDKTFDVIIVGGGPTGVEMAGTLAEMKSIGIPAIFPGVSTDRVH 214
Query: 280 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEAD 338
+ L + + F+ +++ + D ++ I E+ + ++ + Q AD
Sbjct: 215 VTLVEMANHL--LMPFDPALRHYTRRQLQKRGVDVRTNTAIAEVRENSVLLKDGQTLPAD 272
Query: 339 LVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS 398
+V+W G + H N G+ T+ TL VKG RIFA+GD + ++
Sbjct: 273 MVIWAAG---VGAHKSVTN---WGFEQGRGGRIATNGTLLVKGQDRIFAVGDGAI---NT 323
Query: 399 GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPS 453
P P AQ A Q + + PL F + + G M +GRN A V S
Sbjct: 324 EDPKPQLAQPAIQGGECVARQIVHLELGEPLEKFEYNDKGTMATIGRNSAVVQLS 378
>gi|421750002|ref|ZP_16187327.1| NADH dehydrogenase [Cupriavidus necator HPC(L)]
gi|409771031|gb|EKN53464.1| NADH dehydrogenase [Cupriavidus necator HPC(L)]
Length = 442
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 109/413 (26%), Positives = 171/413 (41%), Gaps = 41/413 (9%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
V LVD+S ++KP+L+E+ +G +D +A A F+ + L D
Sbjct: 35 HVTLVDRSPTHIWKPLLHEVAAGSMDQNTHQLEYA---AQALWHHFEFQQGELTGLDRAR 91
Query: 170 VNGPMA-CTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD 228
+A C + L + YD LVL++G+ PGAAE A T+E A R
Sbjct: 92 KTISVAACVDQDGIELLPAREIPYDTLVLAIGSVTHFFGTPGAAEHAIALDTVEQAERFR 151
Query: 229 RKLSELERR---NFERLEEKGIVQAINVETTICPTGTPGNREAA-----LKVLSA----- 275
R+L R R ++ G + +V+ I G G +A +VL+A
Sbjct: 152 RRLISACVRAQNGLARNDDDGDGRP-DVDVVIVGAGATGVELSAELRNTAQVLNAYGLHR 210
Query: 276 ----RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGL 330
R + + L R + V + + + + + + E+ P A+
Sbjct: 211 LDPRRDIHITL--IEGGPRILPALSERVSKETAELLRKLDVRMLVGERVTEIAPDAVLTA 268
Query: 331 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 390
+ A+L +W G PP + LPL+ +GQ +TL P IFA GD
Sbjct: 269 SGKRIPAELTVWAAGI------TAPPVLKTLGLPLSRQGQIVVRQTLQSDDDPDIFAFGD 322
Query: 391 -SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAA 449
+S + +P AQ A QQA F L A + RPL F+F++LG ++ LGR A
Sbjct: 323 CASCPWPAKQTTVPPRAQAAHQQASFLYDALRARLEGRPLPEFQFKDLGSLVSLGRFTAV 382
Query: 450 VSPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLTKSAIDSVA 500
G + G IG S + RL T +R+ V + + +D+VA
Sbjct: 383 -------GNLMGGLIGGSMFIEGLMARLMYTSLYRMHVMALHGAVRMGLDTVA 428
>gi|170078906|ref|YP_001735544.1| type II NADH dehydrogenase A [Synechococcus sp. PCC 7002]
gi|22652016|gb|AAN03562.1|AF381043_1 type II NADH dehydrogenase A [Synechococcus sp. PCC 7002]
gi|169886575|gb|ACB00289.1| type II NADH dehydrogenase A [Synechococcus sp. PCC 7002]
Length = 460
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 94/400 (23%), Positives = 164/400 (41%), Gaps = 42/400 (10%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P K ++ I+GGGFGGLY A L + V L+D+ +F+P+LY++ +G +
Sbjct: 11 PQTDKHKVVIIGGGFGGLYAAKTLGKY----EAAVDVTLIDKRNFHLFQPLLYQVATGTL 66
Query: 135 DAWEIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+IA P L N D V + P TV++ G IV YD
Sbjct: 67 SPADIASPLRGVLSGNKNTHVLLDEVVDIDPDSK-------------TVVMNEG-IVNYD 112
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINV 253
L+++ G +A T+EDA + ++ + E+ + + QA
Sbjct: 113 SLIVATGVSHHYFGNDHWKPYAPGLKTVEDALEIRHRIF-MAFEAAEKETDPALQQAWLT 171
Query: 254 ETTIC--PTGTP---GNREAALKVLSA--RKVQLVLGYFVR---CIRRVGEFEASVKQPE 303
+ PTG E A VL RK+ + R + ++ S+
Sbjct: 172 FVIVGGGPTGVELAGAIAEIAYSVLKKDFRKIDTTRARIILLEGMDRVLPPYDPSLSAKA 231
Query: 304 SGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
++ N+ + + ++ + +G + A ++W G K +
Sbjct: 232 QKSLENLGVQVQTKSLVTNIEDHLVTFKQGDDQCEIAAKTIVWAAGVK-----ASGMSKV 286
Query: 360 LHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
L D L+ G+ + L V G+P +F +GD + + RPLP A VA Q+ ++
Sbjct: 287 LEDRLSATLDRAGRVIVEPNLSVAGYPDVFVIGDLANFPHQNERPLPGVAPVAMQEGEYV 346
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 456
+ +N + + PFR+ LG + ++G+N A V FV+
Sbjct: 347 AKLIKQRVNGQEMAPFRYMELGSLAVIGQNAAVVDLGFVK 386
>gi|260886322|ref|ZP_05897585.1| NADH dehydrogenase [Selenomonas sputigena ATCC 35185]
gi|330839703|ref|YP_004414283.1| NADH dehydrogenase (ubiquinone) [Selenomonas sputigena ATCC 35185]
gi|260864041|gb|EEX78541.1| NADH dehydrogenase [Selenomonas sputigena ATCC 35185]
gi|329747467|gb|AEC00824.1| NADH dehydrogenase (ubiquinone) [Selenomonas sputigena ATCC 35185]
Length = 425
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 93/397 (23%), Positives = 165/397 (41%), Gaps = 54/397 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KPRI ILGGG G+ A +L ++ VL++D + VF+P+LY++ + + A E
Sbjct: 7 KPRIVILGGGIAGIRAARKLA------NEAVDVLIIDHNNYQVFQPLLYQVATSMLSADE 60
Query: 139 -IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I P + + + V F ++ G++ TV + G I YD L++
Sbjct: 61 VIYPIRSFFRSASNVNFLLAEIE--------GIDAA-----AQTVRTDQGDI-GYDHLII 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR---KLSELERRNFERLEEKGIVQAINVE 254
+LG+ P E + P TL D+ + K+ E R + + K ++ + V
Sbjct: 107 ALGSTPNFFGSKSIEENSLPLKTLVDSIEIRSHVLKVFEEASRETDAAKRKALLTFVFVG 166
Query: 255 TTICPTGTPGN------------REAALKVLSARKVQLV---LGYFVRCIRRVGEFEASV 299
P G G+ +E S ++ L+ G + ++ + V
Sbjct: 167 A--GPIGVEGSGGLSELIYDVFQKEYHTIDFSEVEIHLIGADPGVLMMMPEKLRDETVRV 224
Query: 300 KQPESGAIPNIAADKNSDKYILELQP--AIKGLESQIFEADLVLWTVGSKPL--LPHVEP 355
+ + A+ + D L +P A K Q + V+W G +P+ L ++
Sbjct: 225 LEKKKVAVQCSMMVTDYDGETLRYKPFSAPKDAPLQEIKTRTVVWAAGVRPVDCLDGLDV 284
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD-SSGRPLPATAQVAFQQAD 414
+R + + D+T+ G ++A GD S+ RPLP A VA + D
Sbjct: 285 QKDRGRRIIV--------DDTMHAIGFENVYAAGDCSSFTPPEDERPLPTLAPVALAEGD 336
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
A N+ + PL +++ G M I+G ++A +S
Sbjct: 337 VAAANILHKLKGEPLEHLDYKSKGVMAIIGNSEAVMS 373
>gi|456735021|gb|EMF59791.1| NADH dehydrogenase [Stenotrophomonas maltophilia EPM1]
Length = 426
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/394 (23%), Positives = 162/394 (41%), Gaps = 54/394 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + ++GGGF GL+ L ++ ++ LVD+ +F+P+LY++ + + A
Sbjct: 4 ERVPHLVVVGGGFAGLWATRALAR------ERIRITLVDRRNHHLFQPLLYQVATAGLSA 57
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA +L + + + R+ + D + + G ++YD L+
Sbjct: 58 PDIAAPLRHILGHQ--RNVEVRLGEVVAID----------KQARQIRMADGSTLDYDSLL 105
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG--IVQAINVE 254
L+ GA A+ A TL+DA + RKL FER E + +A +
Sbjct: 106 LATGATHAYFGNDQWADDAPGLKTLDDAIALRRKLL----LAFERAEAEPDPAKKAAWLS 161
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--------A 306
+ G G A AR R + A V+ E+G
Sbjct: 162 FAVVGGGPTGVELAGTLAEIARHT------LRNEFRHIDPASAKVRLVEAGPRVLSSFPE 215
Query: 307 IPNIAADKNSDKYILELQPA--IKGLESQIFE-------ADLVLWTVGSKPLLPHVEPPN 357
+ ++ A + +K +E+ + ++SQ F A V+W G P
Sbjct: 216 VLSLKARRQLEKLGVEVLTGTPVSDIDSQGFTLGDQFVPARTVVWAAGV------AASPL 269
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
R D+PL+ G+ L + HP +F GD +AL + G+P+P A A Q +
Sbjct: 270 ARTLDVPLDRAGRVPVQPDLTLPDHPELFVAGDLAALTQADGKPVPGVAPAAKQMGKYVA 329
Query: 418 WNLWAAINDRPLL-PFRFQNLGEMMILGRNDAAV 450
+ A ++ +P PF++ + G + +GR A V
Sbjct: 330 EVIRARLHGKPEPGPFKYADYGNLATIGRMAAIV 363
>gi|344171960|emb|CCA84586.1| NADH dehydrogenase [Ralstonia syzygii R24]
Length = 441
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 168/414 (40%), Gaps = 45/414 (10%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
+ +V+LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKGLDRAA 96
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ G VL E + YD LVL++G+ VPG AE A A R
Sbjct: 97 KIITVSGCIDADGTEVLPERA--IAYDVLVLAIGSVTHFFGVPGTAEHAIALDAASQAER 154
Query: 227 VDRKLSELERRNFERLEEKGIVQA-INVETTICPTGTPGNREAA-----LKVLSAR---- 276
RKL R + G+ A V+ I G G +A VL+A
Sbjct: 155 FRRKLISACMR-----AQNGVGDARAQVDIAIVGAGATGVELSAELRNTAHVLAAYGLHK 209
Query: 277 -------KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ-PAIK 328
++ L+ G R + V + + + D + + ++E+ A+
Sbjct: 210 LDPRRDIRIHLIEG----SPRILAALSERVSTETTKLLHKLNVDVITGERVIEVTGSAVD 265
Query: 329 GLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFAL 388
+ ADL +W G + P LP+N GQ TL +G I+A
Sbjct: 266 TASGKSIPADLTVWAAGIRA------PSILGELGLPVNKLGQVVVSRTLQAEGDDAIYAF 319
Query: 389 GD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 447
GD +S + +P AQ A QQA + L + +P+ PF F++LG ++ LG
Sbjct: 320 GDCASCPWPEASASVPPRAQAAHQQATYLYKALCRRLEGKPVEPFGFKDLGSLVSLGHFS 379
Query: 448 AAVSPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLTKSAIDSV 499
A G + G IG + + RL T +R+ V + + A+D+V
Sbjct: 380 AV-------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFVRMALDTV 426
>gi|291441369|ref|ZP_06580759.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672]
gi|291344264|gb|EFE71220.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672]
Length = 457
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 99/440 (22%), Positives = 187/440 (42%), Gaps = 64/440 (14%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI ++G GF G+ RLE ++ D+ + LV ++ P+L ++ SG +
Sbjct: 6 RPRILVVGAGFAGVECMRRLERMLSPDEA--DLTLVTPFSYQLYLPLLPQVASGVLTPQS 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE--YDWLV 196
IA L+ + ++ R+ P +GV+ T+ E IV YD++V
Sbjct: 64 IA------LSLRRSKKYRTRI---IPGGAIGVDLRSKVCVIRTITDE---IVNQPYDYIV 111
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVET 255
L+ G+ + +PG + AF TL +A + D +S+L + +A ++
Sbjct: 112 LTPGSVTRTFDIPGLTDHAFGMKTLAEAAYIRDHVISQL---DLADASHDPAERASRLQF 168
Query: 256 TICPTGTPGNREAA-LKVLSARKVQ--------LVLGYFVRCIRRVGEFEASVKQPESGA 306
+ G G AA L+ L+ V+ L+ + + ++ PE G
Sbjct: 169 VVVGGGYAGTETAACLQRLTHAAVKRYPRLDPGLIKWHLIDIAPKL--------MPELGE 220
Query: 307 IPNIAADKNSDKYILELQ----------PAIKGLESQIFEADLVLWTVG--SKPLLPHVE 354
+A + + +E+ + + ++ ++WT G + PL+ +
Sbjct: 221 RLGRSAQEVLTRRGIEISLGVSIEKASPTEVTFTDGRVVPTRTLIWTAGVVASPLIATLG 280
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS---GRPLPATAQVAFQ 411
+G+ +C+ GH +FALGD++A+ D + G P TAQ A +
Sbjct: 281 AET---------VKGRLAVTSNMCLPGHDGVFALGDAAAVPDEAKGDGAVCPPTAQHALR 331
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
Q N+ A + ++P+ P+ ++LG ++ LG DA P G+ L G + +
Sbjct: 332 QGRQVADNVIATLRNQPMRPYHHKDLGLVVDLGGTDAVSKPL---GLELKGLPAQAVARG 388
Query: 472 AYLIRLPTDEHRLKVGVSWL 491
+ L T+ + +V +WL
Sbjct: 389 YHFAALRTNVAKTRVMTNWL 408
>gi|33864833|ref|NP_896392.1| type 2 NADH dehydrogenase (Ndh, Ndh2B or NdbA) [Synechococcus sp.
WH 8102]
gi|33632356|emb|CAE06812.1| putative type 2 NADH dehydrogenase (Ndh, Ndh2B or NdbA)
[Synechococcus sp. WH 8102]
Length = 505
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 102/435 (23%), Positives = 171/435 (39%), Gaps = 56/435 (12%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+GGGF G++ L + ++ L+D+ +F+P+L ++ +G V +I
Sbjct: 21 PHVVIVGGGFAGVHACKALA------NADVRITLIDKRNFNLFQPLLCQVSTGLVSRGDI 74
Query: 140 APRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
A +L+ VQ V + P G ++ +G YD LVL+
Sbjct: 75 ATPLRELVGKQHNVQVLLGEVTNVYPE--------------GKQIVFNGKAYSYDHLVLA 120
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
G+ FA P LE A + R+L E+ E+ +A T+
Sbjct: 121 TGSGSTFFGHDEWRTFAPPMKILEHAEEIRRRL----LMAMEQAEQTPDPEARQFLQTVV 176
Query: 259 PTGT-PGNREAA--------------LKVLSARKVQLVL-GYFVRCIRRVGEF--EASVK 300
G P E A K L K Q+VL R +R + E A++K
Sbjct: 177 IVGAGPSGCEMAGAVSELMRWALNNAFKQLDPNKTQIVLVDPGDRVLRAMPEMLSSAALK 236
Query: 301 QPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRL 360
E+ I + + E+ + ++ +A V+WT G + +L
Sbjct: 237 SLEADGIEFLPKGRVQTMRPGEVIVGTPDGDVRL-QAATVIWTAGVR-----ASSLGKKL 290
Query: 361 HD---LPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFA 416
+ ++ G+ + HP I GD SS S+G+PLP A A Q F
Sbjct: 291 AEATGCEVDRGGRVIVQHDFSIADHPEIRVAGDLSSYSHTSNGKPLPGMAAPAKQAGTFI 350
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
G ++ A + DRP F + + G M +L R A + G+ IG +L+
Sbjct: 351 GKDIAAIVADRPRPTFSYFDFGSMAVLDRASAVAD---LRGLHFADGIGWILWAFVHLVL 407
Query: 477 LPTDEHRLKVGVSWL 491
+P E+R+ + + W+
Sbjct: 408 IPDWENRISLSIKWI 422
>gi|190576026|ref|YP_001973871.1| pyridine nucleotide-disulfide oxidoreductase [Stenotrophomonas
maltophilia K279a]
gi|190013948|emb|CAQ47588.1| putative pyridine nucleotide-disulphide oxidoreductase
[Stenotrophomonas maltophilia K279a]
Length = 426
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 90/393 (22%), Positives = 162/393 (41%), Gaps = 52/393 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + ++GGGF GL+ L ++ ++ LVD+ +F+P+LY++ + + A
Sbjct: 4 ERVPHLVVVGGGFAGLWATRALAR------ERIRITLVDRRNHHLFQPLLYQVATAGLSA 57
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA +L + + + R+ + D + + G ++YD L+
Sbjct: 58 PDIAAPLRHILGHQ--RNVEVRLGEVVAID----------KQARQIRMADGSTLDYDSLL 105
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLE-EKGIVQAINVET 255
L+ GA A+ A TL+DA + RKL FER E E + +
Sbjct: 106 LATGATHAYFGNDQWADDAPGLKTLDDAIALRRKLL----LAFERAEAEPDPAKKAAWLS 161
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--------AI 307
G P E L+ ++ R + A V+ E+G +
Sbjct: 162 FAVVGGGPTGVE-----LAGTLAEIARHTLRNEFRHIDPASAKVRLVEAGPRVLSSFPEV 216
Query: 308 PNIAADKNSDKYILELQPA--IKGLESQIFE-------ADLVLWTVGSKPLLPHVEPPNN 358
++ A + +K +E+ + ++SQ F A V+W G P
Sbjct: 217 LSLKARRQLEKLGVEVLTGTPVSDIDSQGFTLGDQFVPARTVVWAAGV------AASPLA 270
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
R D+PL+ G+ L + HP +F GD +AL + G+P+P A A Q +
Sbjct: 271 RTLDVPLDRAGRVPVQPDLTLPDHPELFVAGDLAALSQADGKPVPGVAPAAKQMGKYVAE 330
Query: 419 NLWAAINDRPLL-PFRFQNLGEMMILGRNDAAV 450
+ A ++ +P PF++ + G + +GR A V
Sbjct: 331 VIRARLHGKPEPGPFKYADYGNLATIGRMAAIV 363
>gi|108801232|ref|YP_641429.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Mycobacterium sp. MCS]
gi|119870383|ref|YP_940335.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Mycobacterium sp. KMS]
gi|126437212|ref|YP_001072903.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Mycobacterium sp. JLS]
gi|108771651|gb|ABG10373.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Mycobacterium sp. MCS]
gi|119696472|gb|ABL93545.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Mycobacterium sp. KMS]
gi|126237012|gb|ABO00413.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Mycobacterium sp. JLS]
Length = 389
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 154/381 (40%), Gaps = 65/381 (17%)
Query: 78 KKPRICILGGGFGGLYTA--LRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+P + ++GGG+ G A LR+ + V V LV+ RFV + L++L++G
Sbjct: 4 HRPHVVVIGGGYSGTLAANHLRMRADV-------DVTLVNPRPRFVERIRLHQLVAG--- 53
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
E + DLL G++ D G++ T ++ L SG + YD++
Sbjct: 54 TGEATVDYGDLLGE-GIRLVVDTAT--------GID-----TAARSIELASGGALGYDYV 99
Query: 196 VLSLGAEPKL-DVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE 254
+ ++G+ + + VPGAAEFA P + LE A R+ L EL +
Sbjct: 100 IYAVGSTGAVPESVPGAAEFAHPVAELEQAQRLRAILDELHP---------------DAP 144
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 314
T+ G G A R+V LV G G S+ P ++ A
Sbjct: 145 VTVVGGGLTGIEVATELAEQNRRVTLVCG---------GRLGPSLSDPGRRSVAKTLAKL 195
Query: 315 N----SDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
+ + E++P A+ + + + L +WT G +P + + L + G
Sbjct: 196 HIAVLETDVVTEVRPGAVVFADGAVRPSALTIWTGGFG--VPGLAAQSG----LRTDGMG 249
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
+ TDETL PRI A GD +A SG PL A Q A + + I D
Sbjct: 250 RLLTDETLTSVDDPRIIAAGDCAA---PSGEPLRMCCASASQLGPQAANTVLSRIADEQP 306
Query: 430 LPFRFQNLGEMMILGRNDAAV 450
F + G LGR A V
Sbjct: 307 AVFEYGFAGTCTSLGRRAAIV 327
>gi|424670339|ref|ZP_18107364.1| hypothetical protein A1OC_03958 [Stenotrophomonas maltophilia
Ab55555]
gi|401070797|gb|EJP79311.1| hypothetical protein A1OC_03958 [Stenotrophomonas maltophilia
Ab55555]
Length = 426
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 91/394 (23%), Positives = 162/394 (41%), Gaps = 54/394 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + ++GGGF GL+ L ++ ++ LVD+ +F+P+LY++ + + A
Sbjct: 4 ERVPHLVVVGGGFAGLWATRALAR------ERIRITLVDRRNHHLFQPLLYQVATAGLSA 57
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA +L + + + R+ + D + + G ++YD L+
Sbjct: 58 PDIAAPLRHILGHQ--RNVEVRLGEVVAID----------KQSRQIRMADGSTLDYDSLL 105
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG--IVQAINVE 254
L+ GA A+ A TL+DA + RKL FER E + +A +
Sbjct: 106 LATGATHAYFGNDQWADDAPGLKTLDDAIALRRKLL----LAFERAEAEPDPAKKAAWLS 161
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--------A 306
+ G G A AR R + A V+ E+G
Sbjct: 162 FAVVGGGPTGVELAGTLAEIARHT------LRNEFRHIDPASAKVRLVEAGPRVLSSFPE 215
Query: 307 IPNIAADKNSDKYILELQPA--IKGLESQIFE-------ADLVLWTVGSKPLLPHVEPPN 357
+ ++ A + +K +E+ + ++SQ F A V+W G P
Sbjct: 216 VLSLKARRQLEKLGVEVLTGTPVSDIDSQGFTLGDQFVPARTVVWAAGV------AASPL 269
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
R D+PL+ G+ L + HP +F GD +AL + G+P+P A A Q +
Sbjct: 270 ARTLDVPLDRAGRVPVQPDLTLPDHPELFVAGDLAALSQADGKPVPGVAPAAKQMGKYVA 329
Query: 418 WNLWAAINDRPLL-PFRFQNLGEMMILGRNDAAV 450
+ A ++ +P PF++ + G + +GR A V
Sbjct: 330 EVIRARLHGKPEPGPFKYADYGNLATIGRMAAIV 363
>gi|408826497|ref|ZP_11211387.1| transmembrane NADH dehydrogenase [Streptomyces somaliensis DSM
40738]
Length = 445
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 110/459 (23%), Positives = 186/459 (40%), Gaps = 82/459 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+++PR+ I+G GF G TA L + + +++L++ ++ F++ P+L ++ +G ++
Sbjct: 6 RRRPRVLIVGAGFAGYQTARELSRTL---RGRAEIVLLNPTDYFLYLPLLPQVAAGILEP 62
Query: 137 WEIAPRFADLLANT--------GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL 188
+ L + V RV P G G
Sbjct: 63 RRVTVSLPGTLRHVRLVLGEAGHVDLETKRVHYTDPEGTAGELG---------------- 106
Query: 189 IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIV 248
YD LVL++G+ KL +PG AE A F L +A + R + R E
Sbjct: 107 ---YDRLVLAVGSVSKLLPIPGVAENATGFRGLPEALYL--------RDHITRQVELAAS 155
Query: 249 QAINVETT------ICPTGTPGNREAALKVL--------------SARKVQLVLGYFVRC 288
A E T + G G AA + +AR ++L R
Sbjct: 156 AADPAECTSRCTFVVVGAGYTGTEVAAHGKMFTDALVRKHPAWPENARPRWMLLDVADRV 215
Query: 289 I----RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 344
+ RR+ + V + + + K S + + L + E ++W V
Sbjct: 216 LPGLDRRLSDTADQVLRSRGVDVRMGTSVKESTREGVLLD------TGEFVETRSLIWCV 269
Query: 345 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD--SSGRPL 402
G +P +P + L LP+ RG+ L V G P +FA GD++A+ D G
Sbjct: 270 GVRP-----DPLVSEL-GLPVE-RGRLVVTPQLEVPGRPGVFACGDAAAVPDLHRPGEFT 322
Query: 403 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 462
P TAQ A +Q A N+ A++ +P+R +LG + LG AA +P GV L G
Sbjct: 323 PMTAQHASRQGKVAARNVAASLGVGDPVPYRHSDLGFAVDLGGVKAAANPL---GVPLSG 379
Query: 463 PIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAIDSVAL 501
+ + + +L +P + R++V WL +A+ A+
Sbjct: 380 ILAGAVTRGYHLAAMPGN--RVRVAADWLLDAALPRQAV 416
>gi|358458474|ref|ZP_09168683.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Frankia
sp. CN3]
gi|357078203|gb|EHI87653.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Frankia
sp. CN3]
Length = 415
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 167/385 (43%), Gaps = 68/385 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI +LGGG+ G+ A+R+ + + +V LV+ S+RFV + L++L +G+ A
Sbjct: 24 RILVLGGGYAGVLAAVRVARRTRR--RGGRVTLVNPSDRFVERLRLHQLSTGQQLADH-- 79
Query: 141 PRFADLLANTGVQFFK------DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
R DLLA +GV F + DR D T G L YD
Sbjct: 80 -RLPDLLAGSGVAFVQGVAVGLDRTARTVDVD----------TEDGRRQLG------YDI 122
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE 254
LV +LG+ VPGAA+ A+ + A R+ +L+E++ + +
Sbjct: 123 LVYALGSVTDTGAVPGAADHAYTLAG-PAAARLADRLTEVDAAAGRVAVVGAGLTGVEAA 181
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLG-----YFVRCIRRVG-EFEASVKQPESGAIP 308
T I T PG R + +LS + ++G Y R + R+G E + V + +P
Sbjct: 182 TEIAET-FPGLR---VTLLSRDEPGPMMGDAARAYLNRGLDRLGVEVRSGVDVTK--VLP 235
Query: 309 N---IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
+A D L+P AD V+WTVG + L P L +
Sbjct: 236 TGIEVAGD---------LEP---------VPADAVVWTVGVRAL------PLAEQAGLAV 271
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425
+ +G+ DETL + P I+A+GD++A+R G + T Q A N+ +
Sbjct: 272 DGQGRILVDETLRSESDPAIYAVGDAAAVRQPWGM-IHGTCQSGMPTGARAADNIGRRLR 330
Query: 426 DRPLLPFRFQNLGEMMILGRNDAAV 450
R PFRF + + + LGR DA +
Sbjct: 331 GRRPKPFRFGYIHQPVSLGRRDAVI 355
>gi|24375021|ref|NP_719064.1| respiratory NADH dehydrogenase II Ndh [Shewanella oneidensis MR-1]
gi|24349762|gb|AAN56508.1| respiratory NADH dehydrogenase II Ndh [Shewanella oneidensis MR-1]
Length = 429
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 144/364 (39%), Gaps = 53/364 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D+S ++KP L+E+ G +D + D G ++ + ++ C D +
Sbjct: 34 VCLIDKSPIHIWKPKLHEVAVGVIDQSIEGLLYRDHGLKNGYRYLRGEIEQ-CDPDTKTI 92
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
+ G +LLE I EYD+LVL+LG GA + +L++A +K
Sbjct: 93 RLAAVYSDSGELLLEPRQI-EYDFLVLALGGVSNSFNTLGAEQHCIFLDSLDNANLFHQK 151
Query: 231 LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 290
L + + E E+ V I G G AA L + + ++
Sbjct: 152 LLDALLQLNETQEK--------VSIGIVGAGATGVELAA-----------ELHHVIESVK 192
Query: 291 RVGEFEASVKQPESGAI---PNIA----------ADKNSDKYILELQPAIK-------GL 330
G S + I P I A DK + L ++ G
Sbjct: 193 EYGYLNISKHHLDVHLIEASPKILPQLPERVSARAQAVLDKIGIRLHIGVQVKEVTRDGF 252
Query: 331 ESQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRI 385
+Q + +A L +W G V+ P LP+ R Q E D + VKG I
Sbjct: 253 ITQDGDMIKASLKVWAAG-------VKGPKAFQNFSKLPITPRNQVEVDACMRVKGQQDI 305
Query: 386 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
+A+GD + L SG+P+P AQ A Q AD N+ + + PF +++ G ++ L R
Sbjct: 306 YAIGDCALLILDSGQPVPPRAQAAAQMADTLYENIVNRLQGKVEKPFVYKDYGSLVSLSR 365
Query: 446 NDAA 449
A
Sbjct: 366 FSAV 369
>gi|269925199|ref|YP_003321822.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermobaculum terrenum ATCC BAA-798]
gi|269788859|gb|ACZ41000.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Thermobaculum terrenum ATCC BAA-798]
Length = 449
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 100/444 (22%), Positives = 179/444 (40%), Gaps = 55/444 (12%)
Query: 69 SQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYE 128
SQT K +I ILG GFGG+ A+ L+ + + + +L+VD+ +F+P+L+
Sbjct: 16 SQTEEEYRKASYKILILGAGFGGIQAAIELDKHLGKR-QDVSILVVDRDNTQLFQPLLWT 74
Query: 129 LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL 188
+ SG+ + VK H+ + + V ++G
Sbjct: 75 VASGKNCPDDTTVPIRKFQKGRSFHVMHSAVK------HIDLQNQV-------VYFDNGE 121
Query: 189 IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIV 248
+D+LV++LG+ + +PG E A F + DA EL + + LE
Sbjct: 122 DRPFDFLVIALGSVTAIPDLPGLRERALLFRSPADAI-------ELRNKVIDALEMAHKE 174
Query: 249 QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV----------------RCIRRV 292
Q + G + +++ + K + G F R R V
Sbjct: 175 QDPEARKSWLTFVVGGGGDTGIELAATLKEYIYAGLFAEYPWLENEPARIVLVSRSSRLV 234
Query: 293 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 352
+ + + + + + ++ + + + +A + W G P
Sbjct: 235 PQSRPHISKTVQEVLEHEGIEVMNNTSVEAVTEDEVKTSAGTIKARTLFWAAGITA--PK 292
Query: 353 VEPPNNRLHDLPL-NAR-GQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPATAQVA 409
V + DLP+ +AR G D+ L + +P +F +GDS+ A + P+P TAQ A
Sbjct: 293 V------VKDLPVEHARNGSLIVDKFLRIPQYPNVFVVGDSAWAFDARTNDPIPPTAQAA 346
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND--AAVSPSFVEGVTLDGPIGHS 467
+ G + + I +R + PF F+ LG + +LG+ A V P G+ I HS
Sbjct: 347 EHMGRYVGRTISSLIQNRSIKPFVFKPLGHLALLGQRTGVAEVGPLTFTGIPA-WFIWHS 405
Query: 468 ARKLAYLIRLPTDEHRLKVGVSWL 491
YLI +P+ ++R+ + WL
Sbjct: 406 ----YYLIHIPSWQNRIYLFTHWL 425
>gi|338213153|ref|YP_004657208.1| NADH dehydrogenase (ubiquinone) [Runella slithyformis DSM 19594]
gi|336306974|gb|AEI50076.1| NADH dehydrogenase (ubiquinone) [Runella slithyformis DSM 19594]
Length = 434
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 101/432 (23%), Positives = 182/432 (42%), Gaps = 46/432 (10%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL-LSGE 133
P + R+ I+G GFGGL A L Q++L+D++ F+P+ Y++ ++G
Sbjct: 6 PKTELKRVVIVGAGFGGLVLARELSK-----RSDVQIVLIDKNNYHQFQPLFYQVAMAG- 59
Query: 134 VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
L + + F +V + H+ V + V+ VEYD
Sbjct: 60 -------------LEPSSISFPLRKVFQSKHNVHIRVTEVVKIDAEANVIETKLGPVEYD 106
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERR-NFERLEEK-GIVQA 250
+LVL+ GA+ + E A P ++ +A + +R L E + E LEE+ G++
Sbjct: 107 FLVLATGADTNFFGMKNMIENAMPMKSVSEALALRNRMLQNFEDALSVETLEERHGLMNV 166
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGY--FVRCIRRVGEFEASVKQPESGAIP 308
+ V G P E A + ++ L Y ++ +E+S PE +
Sbjct: 167 VIV------GGGPTGVEVAGTLAEMKRHILPKDYPELNFDSMQIYLYESS---PEVLEVM 217
Query: 309 NIAADKNSDKYILELQPAIK-GLESQIFEADLVLWTVGSK----PLLPHVEPPNNRLHDL 363
+ A K + +Y+ +L ++ G+ F+ G + L+ N + +
Sbjct: 218 SDQASKKAKEYLTDLGVNLRLGVRIIDFDGKYATTNTGDRLRTNNLIWAAGVKANAIEGI 277
Query: 364 PLNA---RGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWN 419
P+ + G+ + + V+G IFALGD +S + P AQ A QQ + N
Sbjct: 278 PVASIVRGGRVKVNRFSQVEGTQNIFALGDLASMAEEKYPNGHPQLAQPAMQQGELLAKN 337
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ + + + PF +++LG M +GRN A V F + G +LI +
Sbjct: 338 MVRMMKGQEMKPFTYKDLGSMATVGRNLAVVDLPFWK---FQGFFAWLTWMFVHLISIVG 394
Query: 480 DEHRLKVGVSWL 491
++RL + ++WL
Sbjct: 395 VKNRLLIFINWL 406
>gi|344209046|ref|YP_004794187.1| NADH dehydrogenase (ubiquinone) [Stenotrophomonas maltophilia JV3]
gi|343780408|gb|AEM52961.1| NADH dehydrogenase (ubiquinone) [Stenotrophomonas maltophilia JV3]
Length = 426
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 90/394 (22%), Positives = 164/394 (41%), Gaps = 54/394 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
++ P + ++GGGF GL+ L ++ ++ LVD+ +F+P+LY++ + + A
Sbjct: 4 ERVPHLVVVGGGFAGLWATRALAR------ERIRITLVDRRNHHLFQPLLYQVATAGLSA 57
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA +L + + + R+ + D + + G ++YD L+
Sbjct: 58 PDIAAPLRHILGHQ--RNVEVRLGEVLAID----------KQARQIRMADGSTLDYDSLL 105
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG--IVQAINVE 254
L+ GA A+ A TL+DA + RKL FER E + +A +
Sbjct: 106 LATGATHAYFGNDQWADDAPGLKTLDDAIALRRKLL----LAFERAEAEPDPAKKAAWLS 161
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--------A 306
+ G G A AR R + A V+ E+G
Sbjct: 162 FAVVGGGPTGVELAGTLAEIARHT------LRNEFRHIDPASAKVRLVEAGPRVLSSFPE 215
Query: 307 IPNIAADKNSDKYILELQPA--IKGLESQIFE-------ADLVLWTVGSKPLLPHVEPPN 357
+ ++ A + +K +E+ + ++SQ F+ A V+W G P
Sbjct: 216 VLSLKARRQLEKLGVEVLTGTPVSDIDSQGFKLGEQFVPARTVVWAAGV------AASPL 269
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
R D+PL+ G+ + L + HP +F GD +AL ++G+P+P A A Q +
Sbjct: 270 ARTLDVPLDRAGRVQVQPDLTLPDHPELFVAGDLAALNQANGKPVPGVAPAAKQMGKYVA 329
Query: 418 WNLWAAINDRPLL-PFRFQNLGEMMILGRNDAAV 450
+ A ++ + PF++ + G + +GR A V
Sbjct: 330 EVIRARLHGKAAPGPFKYADYGNLATIGRMAAIV 363
>gi|428222013|ref|YP_007106183.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
7502]
gi|427995353|gb|AFY74048.1| NADH dehydrogenase, FAD-containing subunit [Synechococcus sp. PCC
7502]
Length = 440
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 92/419 (21%), Positives = 165/419 (39%), Gaps = 49/419 (11%)
Query: 92 LYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANT- 150
LY A +L+ + ++ L+D+ +F+P+LY++ +G + +IA +LAN
Sbjct: 16 LYAAQKLQGI------DARITLIDKRNFHLFQPLLYQVATGVLSPADIASPLRGVLANQK 69
Query: 151 GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPG 210
VK + P + + G ++YD+ +++ G
Sbjct: 70 NTTVLMGEVKDIDPDSK-------------KIYVSGGEEIDYDYAIVATGVSHHYFGNDH 116
Query: 211 AAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAA 269
+++A T+EDA + R+ L E E EK V PTG A
Sbjct: 117 WSQWAPGLKTVEDAINIRRRILDAFETAEKETDPEKRKALLTFVVIGGGPTGV--ELAGA 174
Query: 270 LKVLSARKVQ-------------LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 316
+ L+ + L+L F R + + + + A+ + +
Sbjct: 175 IGELANHTLHDEFSNINTTEAEILLLEGFERILP---PYAPDLSASATDALTKLGVTVKT 231
Query: 317 DKYILELQPAIK----GLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAE 372
+ + + G ++ A +LW G K + + D PL+ G+
Sbjct: 232 GAIVTNIHDHVVTFRCGDRTEEVTAQTILWAAGVKA--SALGEILAKRADAPLDRVGRVM 289
Query: 373 TDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 431
L V HP +F +GD + G+PLP A VA QQ +F L A I + PL
Sbjct: 290 VSPDLSVPNHPSLFVIGDLAHYAHQDEGKPLPGVAPVAMQQGEFIAKLLKAQIRNLPLPQ 349
Query: 432 FRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
FR+ + G + ++GRN A V F++ + + + + YL+ +++L V V W
Sbjct: 350 FRYVDRGSLAVIGRNAAVVDLRFMKLTGMPAWLIWTFLHIFYLVEF---DNQLVVMVQW 405
>gi|418422363|ref|ZP_12995536.1| putative oxidoreductase [Mycobacterium abscessus subsp. bolletii
BD]
gi|363996279|gb|EHM17496.1| putative oxidoreductase [Mycobacterium abscessus subsp. bolletii
BD]
Length = 391
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 95/401 (23%), Positives = 161/401 (40%), Gaps = 71/401 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGE-VDA 136
+ P + +LGGG+ G A RL Q + + LV+ E FV + L++ +G +
Sbjct: 4 QHPHVVVLGGGYAGTMAANRL-----QQNTNIDITLVNPREEFVHRLRLHQFAAGTGIAT 58
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
E AP RV+L+ S + ++ P + LESG +++YD+L+
Sbjct: 59 AEYAP------------MLGKRVRLVVDS-AVRIDAPARM-----IRLESGDVLDYDYLI 100
Query: 197 LSLGAEPKLDV-VPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
++G+ +PG +EFA+P S E A R+ LE G +V+
Sbjct: 101 YAIGSTDSTAAGIPGLSEFAYPLSEFESAQRLRVA-----------LETSG----PDVQI 145
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKN 315
T+ G G A+ R V+LV G G+ + P I A +
Sbjct: 146 TVVGAGLTGIEMASELADLGRNVRLVCG---------GQLAPTFGAPARRTIAQWFARRR 196
Query: 316 SD----KYILELQP-AIKGLESQIFEADLVLWT--VGSKPLLPHVEPPNNRLHDLPLNAR 368
D + E++P ++ + + + +W G L H L ++A
Sbjct: 197 VDVLENTSVTEVRPDSVVLADGTALSSAITVWAGGFGVPALAAH--------SGLSVDAD 248
Query: 369 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
G+ TD+TL RI GD+ ++ P + A A + + + D
Sbjct: 249 GRLLTDDTLTSMDDGRIVGAGDAVT---TTSLPTRMSCYTANTTGAAAADTVLSHLADTE 305
Query: 429 LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
PFR +G+ + LGR +A + + + D P+G AR
Sbjct: 306 PAPFRLAYVGQCLSLGRGNAVLQFTRKD----DSPVGAHAR 342
>gi|256375945|ref|YP_003099605.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Actinosynnema mirum DSM 43827]
gi|255920248|gb|ACU35759.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Actinosynnema mirum DSM 43827]
Length = 442
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 101/432 (23%), Positives = 182/432 (42%), Gaps = 48/432 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP++ ++G GF G + LE + +D +++ V+ ++ ++ P+L E+ G +D
Sbjct: 3 KPKVLVVGTGFAGFHALKSLEKALPRD--AAELIAVNPTDYTLYVPLLPEVAGGSLDPRR 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+A L T L G++ P A T + G ++E+D L+++
Sbjct: 61 VAVPLRSTLKRT----------RLVLGTATGID-PEARTCSVVDVEGRGRVLEWDRLIVT 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETTI 257
G+ ++ VPG E A F ++ +A + D L ++E + +A V
Sbjct: 110 AGSVTRMLSVPGVGEHALGFKSVPEALYLRDHVLRQVELAEQSDDPAERAARATFVVVGA 169
Query: 258 CPTGTP----GNREAALKVLSARKVQ-----------LVLGYFVRCIRRVGEFEASVKQP 302
TGT G R A + L AR+ L+L R + + + P
Sbjct: 170 GYTGTELVAQGQRMTA-EALRARRGAPGALRPDECRWLLLDMADRVL---PGLDPRMSGP 225
Query: 303 ESGAIPNIAADKNSDKYILELQPAIKGL-ESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
+ + D + E+ L + V+W VG +P P +
Sbjct: 226 ARKVLESRGVDVRMKTSVAEVTDTCARLTDGSEIPTRTVVWCVGVRP------DPLVQAS 279
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWN 419
LP RG+ D +L V+G ++A GD +A+ D + G+P P TAQ A +Q AG N
Sbjct: 280 GLP-EERGRVVVDTSLAVRGLDGVYAAGDLAAVPDHYNRGKPTPMTAQHAQRQGALAGRN 338
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ A++ + ++ ++LG ++ L DA P V L G + +L+ +P
Sbjct: 339 VAASLGHGQVKRYKHRDLGFVVDLAGMDAVADPLRVP---LSGVPAKIVARGYHLLAMPG 395
Query: 480 DEHRLKVGVSWL 491
+ R++V W+
Sbjct: 396 N--RVRVAAEWI 405
>gi|420241063|ref|ZP_14745229.1| NADH dehydrogenase, FAD-containing subunit, partial [Rhizobium sp.
CF080]
gi|398072901|gb|EJL64094.1| NADH dehydrogenase, FAD-containing subunit, partial [Rhizobium sp.
CF080]
Length = 333
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 332 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDS 391
SQ F V+W G K P+ R + A G+ + L + G P IFA+GD+
Sbjct: 152 SQRFRTSCVIWGAGVKA------SPSARWLGIEGKAGGRIPVEPDLSITGFPDIFAIGDT 205
Query: 392 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND-RPLLPFRFQNLGEMMILGRNDAAV 450
+ G+PLPA AQVA QQ + G L A + D +P PF F N G ++GR DAA+
Sbjct: 206 ALGLAEDGKPLPALAQVAKQQGQYLGKALRAKLLDGKPAEPFHFHNRGNTAVIGR-DAAI 264
Query: 451 SPSFVEGV-TLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTK 493
F G TL G + L ++ L E RL V V W+ +
Sbjct: 265 ---FDFGKWTLKGRLAWFLWALVHVYLLVNFEKRLLVSVQWIWR 305
>gi|221215312|ref|ZP_03588277.1| DoxD family protein/pyridine nucleotide-disulfide oxidoreductase
[Burkholderia multivorans CGD1]
gi|221164744|gb|EED97225.1| DoxD family protein/pyridine nucleotide-disulfide oxidoreductase
[Burkholderia multivorans CGD1]
Length = 435
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 107/447 (23%), Positives = 173/447 (38%), Gaps = 71/447 (15%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K + + I+G GFGG+ A +L + + V ++D+ +F+P+LY++ +
Sbjct: 6 KNRHHVVIIGAGFGGIEVANQLAGV------EVDVTIIDRRNHHLFQPLLYQVAGASLST 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHG-----GTVLLESGLIVE 191
EIA L F++R + VN MA G V+L +G
Sbjct: 60 SEIAWPIRYL--------FRNRPE---------VNTLMAEVEGIDQDARQVILNNGSRQT 102
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQA 250
YD LVL+ GA FA TLEDA + R L+ E + Q
Sbjct: 103 YDTLVLATGATHAYFGHDEWGAFAPGLKTLEDATAIRGRILAAFEEAELTSDPQ----QR 158
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG----- 305
++T + G P E L+ +L R R + + V E+G
Sbjct: 159 AALQTFVIIGGGPTGVE-----LAGTIAELARDTLARDFRSIDPSTSRVVLIEAGPRLLS 213
Query: 306 -------AIPNIAADKNSDKYILELQPAIKGLESQIF-----EADLVLWTVGSKPLLPHV 353
A A +K + +L + ++ A ++W G K
Sbjct: 214 VFPEDLSAYTRQALEKLGVEVVLGTPVTECSADGVVYGGKPLSAKTIVWAAGVKA----- 268
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ- 412
P R + G+ L V G P +FA+GD+++ + G+P+P A A QQ
Sbjct: 269 -SPAARWLGAASDRAGRVVVGPDLTVAGRPEVFAIGDTASCTMADGKPVPGIAPAAKQQG 327
Query: 413 ---ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
A+ G L D PF +++ G + +GR+ A + V+ L G
Sbjct: 328 KYVANLIGRRLKGKSADG---PFIYRHQGNLATIGRSLAVIDMGRVK---LRGAFAWWIW 381
Query: 470 KLAYLIRLPTDEHRLKVGVSWLTKSAI 496
KLA++ L +RL V +SW+ +I
Sbjct: 382 KLAHIYFLIGTRNRLSVALSWVWNHSI 408
>gi|418751816|ref|ZP_13308088.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. MOR084]
gi|409967545|gb|EKO35370.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. MOR084]
Length = 422
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 84/434 (19%), Positives = 170/434 (39%), Gaps = 54/434 (12%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +K + ++G GFGGL +L + ++ ++D+ +F+P+LY++ + +
Sbjct: 3 ESRKRKAVVIGAGFGGLQAIKKLSR-----NNDLEITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + V ++ + YD+L
Sbjct: 58 PADIAIPIRSLVGE------RSNVTVVLGE-------ATKVDLAAKTVYYQNTSTNYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG---IVQAIN 252
+LS GA ++ L+DA ++ KL +FE+ E G +V+A+
Sbjct: 105 ILSAGARSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKAL- 159
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYF---------VRCI----RRVGEFEASV 299
+ G P E A + Q++ F + I R + F+ S+
Sbjct: 160 -LNYVIIGGGPTGVELAGSIAELSH-QIIRDEFHTIDPALSKITLIEAAPRLLTTFDVSL 217
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
+ + + + + ++++ LE ++ V+W G + N+
Sbjct: 218 GEFTKKRLESRGVEVLTGARVIDIDERGVQLEGKMIPTQTVIWAAGVQA--------NSI 269
Query: 360 LHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
L L+ G+ DE ++GHP +F +GD + RPLP + VA QQ +
Sbjct: 270 ASTLGATLDRSGRVSVDEFCNIEGHPEVFVIGDIANYSKGLERPLPGVSPVAMQQGRYVA 329
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
+ + ++ PFR+ + G M +GR DA + + G G A +L
Sbjct: 330 ALIQGDLKNKKRKPFRYVDKGSMATIGRTDAVAQMGVLR---MKGLFGWFAWLFVHLFYQ 386
Query: 478 PTDEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 387 VGFKNKITILITWV 400
>gi|146104827|ref|XP_001469921.1| putative NADH dehydrogenase [Leishmania infantum JPCM5]
gi|134074291|emb|CAM73037.1| putative NADH dehydrogenase [Leishmania infantum JPCM5]
Length = 527
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 108/457 (23%), Positives = 179/457 (39%), Gaps = 89/457 (19%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + +LG G+ G Y AL + D + ++ VF P+L + +G ++
Sbjct: 11 KPNVVVLGTGWAGCYAALHV------DPNLCNIHVISTRNHMVFTPLLPQTTTGTLEFRS 64
Query: 139 IAPRFADL---LANTGVQFFK--------DRVKLLCP-------SDHLGVNGPMACTHGG 180
+ ++ LA +F + D ++ C S+++ VN
Sbjct: 65 VCEPITNIQPALAKPPHRFLRSVIYDVDFDEKQVKCVGVGVVGGSENVPVNT-------- 116
Query: 181 TVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE 240
V YD+L+++ GA P +PG E AF + +A + ++L ++
Sbjct: 117 -------FSVPYDYLIMAYGARPNTFNIPGVEEKAFFLREVNEARGIRKRL--VQNIMTA 167
Query: 241 RLEEKGIVQAINVETTICPTGTPGNREAA---------------LKVLSARKVQL----- 280
L I +A + T+ G P E A +L KV +
Sbjct: 168 NLPTTSIAEAKRLLHTVVVGGGPTGIEFAANLAEFFREDIKNVNTSLLPYCKVTVLEAGE 227
Query: 281 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 340
VLG F +RR G+ + E I A +D+ + ++ LV
Sbjct: 228 VLGSFDTALRRYGQLRLNQLGVE---IRKTAVVGVTDEEVFTKS-------GEVLPTGLV 277
Query: 341 LWT--VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCV----KGHPRIFALGDSSAL 394
+W+ VGS P+ ++ RG+ D+ L V K P +FA GD +A
Sbjct: 278 VWSTGVGSGPVTKALKCDKTN--------RGRISIDDHLRVLRDGKPIPNVFAAGDCAA- 328
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAVSPS 453
S+ RPLP A VA +Q + G + + + + PF +++LG M +G A VS
Sbjct: 329 --SNERPLPTLAAVASRQGRYIGKEMNNLLKGKQMSRPFVYRSLGSMASIGNRSAIVSLG 386
Query: 454 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
L+G K AYL L + +L V V+W
Sbjct: 387 DKFKFDLNGCAALWVWKSAYLTILGSIRSKLYVIVNW 423
>gi|17546948|ref|NP_520350.1| NADH dehydrogenase, membrane flavoprotein FAD NAD ubiquinone
electron transport oxidoreductase [Ralstonia
solanacearum GMI1000]
gi|17429249|emb|CAD15936.1| probable nadh dehydrogenase, membrane flavoprotein fad nad
ubiquinone electron transport oxidoreductase [Ralstonia
solanacearum GMI1000]
Length = 441
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 103/411 (25%), Positives = 165/411 (40%), Gaps = 39/411 (9%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLL-CPS 165
+ +V+LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKGLDRAA 96
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ V+G + G VL E + YD LVL++G+ VPG AE A A
Sbjct: 97 KTITVSGCVDAD-GTEVLPERA--IAYDMLVLAIGSVTHFFGVPGTAEHAIALDAASQAE 153
Query: 226 RVDRKLSELERRNFERLEEKGIVQA-INVETTICPTGTPG--------NREAALKVLSAR 276
R RKL R + G+ A V+ I G G N L
Sbjct: 154 RFRRKLISACMR-----AQNGVGDARAQVDIAIVGAGATGVELSAELRNTAHVLAAYGLH 208
Query: 277 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE-----LQPAIKGLE 331
K+ + + I A++ + S + N + E A+K
Sbjct: 209 KLDPLRDIRIHLIEGSPRILAALSERVSTETTKLLQKLNVEVITGERVNQVTDSAVKTAS 268
Query: 332 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD- 390
+ ADL +W G + P LP+N GQ TL +G I+A GD
Sbjct: 269 GKSIPADLTVWAAGIRA------PAILGELGLPVNKLGQVVVSRTLQAEGDDAIYAFGDC 322
Query: 391 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
+S + +P AQ A QQA + L + +P+ PF F++LG ++ LG A
Sbjct: 323 ASCPWPEASASVPPRAQAAHQQATYLYKALCRRLEGKPVEPFGFKDLGSLVSLGHFSAV- 381
Query: 451 SPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLTKSAIDSV 499
G + G IG + + RL T +R+ V + + A+D+V
Sbjct: 382 ------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFVRMALDTV 426
>gi|418746409|ref|ZP_13302735.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. CBC379]
gi|410792684|gb|EKR90613.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. CBC379]
Length = 422
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 84/434 (19%), Positives = 170/434 (39%), Gaps = 54/434 (12%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +K + ++G GFGGL +L + ++ ++D+ +F+P+LY++ + +
Sbjct: 3 ESRKRKAVVIGAGFGGLQAIKKLSR-----NNDLEITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + V ++ + YD+L
Sbjct: 58 PADIAIPIRSLVGE------RSNVTVVLGE-------ATKVDLASKTVYYQNTSTNYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG---IVQAIN 252
+LS GA ++ L+DA ++ KL +FE+ E G +V+A+
Sbjct: 105 ILSAGARSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKAL- 159
Query: 253 VETTICPTGTPGNREAALKVLSARKVQLVLGYF---------VRCI----RRVGEFEASV 299
+ G P E A + Q++ F + I R + F+ S+
Sbjct: 160 -LNYVIIGGGPTGVELAGSIAELSH-QIIRDEFHTIDPALSKITLIEAAPRLLTTFDVSL 217
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
+ + + + + ++++ LE ++ V+W G + N+
Sbjct: 218 GEFTKKRLESRGVEVLTGARVIDIDERGVQLEGKMIPTQTVIWAAGVQA--------NSI 269
Query: 360 LHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
L L+ G+ DE ++GHP +F +GD + RPLP + VA QQ +
Sbjct: 270 ASTLGATLDRSGRVSVDEFCNIEGHPEVFVIGDIANYSKGLERPLPGVSPVAMQQGRYVA 329
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
+ + ++ PFR+ + G M +GR DA + + G G A +L
Sbjct: 330 ALIQGDLKNKKRKPFRYVDKGSMATIGRTDAVAQMGVLR---MKGLFGWFAWLFVHLFYQ 386
Query: 478 PTDEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 387 VGFKNKITILITWV 400
>gi|253574172|ref|ZP_04851514.1| pyridine nucleotide-disulphide oxidoreductase [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846649|gb|EES74655.1| pyridine nucleotide-disulphide oxidoreductase [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 392
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 91/399 (22%), Positives = 151/399 (37%), Gaps = 74/399 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG G+GG+ +AL + D + ++ +V+Q L+ L +G + ++
Sbjct: 4 HILILGAGYGGVLSALSARK--FMDKSQARITVVNQYPTHQIITELHRLAAGSISERAVS 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L + +V+ V L G ++ YD LV+ LG
Sbjct: 62 LPLDKLFKGKDIDLRIAKVESFSVDKK-------------EVKLSDGTVLSYDALVVGLG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
+ +PG + + + +DA +R + +E + I
Sbjct: 109 SITAYFGIPGLEKHSMVLKSADDA-----------KRIYAHIESR-----------IREY 146
Query: 261 GTPGNREAALKVLSA---RKVQLV---LGYFVRCIRRVGEFEASVKQPESGAIPNI---- 310
GN A V+ V+LV ++ G ++ +K A P I
Sbjct: 147 AASGNEADATIVIGGGGLTGVELVGEIADKLPELTKKYGVPQSEIKLMLVEAGPKILPVL 206
Query: 311 ----------AADKNSDKYILEL------QPAIKGLESQIFEADLVLWTVG--SKPLLPH 352
+ +K K++ L I + Q A+ +WT G PL+
Sbjct: 207 PDELIERATASLEKRGVKFLTGLPVTNVEGNTIDLKDGQKIVANTFVWTGGVQGNPLVGE 266
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
L +N RG+A +E L HP +F GDS+ GRP P TAQ+A+Q
Sbjct: 267 --------SGLEVN-RGRASVNEFLQSVSHPDVFVAGDSAVFMGPDGRPYPPTAQIAWQM 317
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
+ G+NL+A +N + + F N G + LGR DA +
Sbjct: 318 GELIGYNLFAYLNGKTMNAFSPINSGTLASLGRKDAVAT 356
>gi|332143220|ref|YP_004428958.1| respiratory NADH dehydrogenase II [Alteromonas macleodii str. 'Deep
ecotype']
gi|410863414|ref|YP_006978648.1| respiratory NADH dehydrogenase II [Alteromonas macleodii AltDE1]
gi|327553242|gb|AEA99960.1| Respiratory NADH dehydrogenase II [Alteromonas macleodii str. 'Deep
ecotype']
gi|410820676|gb|AFV87293.1| respiratory NADH dehydrogenase II [Alteromonas macleodii AltDE1]
Length = 430
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 153/362 (42%), Gaps = 46/362 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCP-- 164
K+ ++ LVD+S ++KP+L+E+ +G +D +A + ++ ++ +C
Sbjct: 28 KQAEITLVDRSRTHIWKPLLHEVAAGVIDKHSDGVDYA---IHAAAHHYRFQLGEMCSLN 84
Query: 165 SDHLGVN-GPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
+D ++ P+ G VL E V YD LVL++G+ PG AE + +L+
Sbjct: 85 ADAQTISLAPLVDEEGTQVLPERE--VHYDQLVLAIGSVSNDFGTPGVAEHCYFLDSLKQ 142
Query: 224 ACRVDRK-LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAA------------- 269
A R R L++L R N + E+K E I G G AA
Sbjct: 143 AERFHRALLNQLIRINQQ--EDKD----ARFEVAIVGAGATGTELAAQLHHVANLSKAYG 196
Query: 270 LKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIK 328
+ +SA ++++ + V R+ + A+ + D + E K
Sbjct: 197 MPEMSASRLKITI---VEAGERILPALPERIANSARKALHKLGVDIKEQTMVAEADA--K 251
Query: 329 GLESQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHP 383
GL ++ +ADL++W G V+ P+ +L N Q D+ L +
Sbjct: 252 GLITKDGGRIDADLMVWAAG-------VKAPDFITQLDLFETNRANQILVDKQLRSSTNK 304
Query: 384 RIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMIL 443
I+ LGD + +G+ +P AQ A Q AD G N+ A + F +++ G ++ L
Sbjct: 305 NIWVLGDCCGFQQENGKWVPPRAQSAHQMADIVGHNITALFTQKETKAFTYKDYGSLVHL 364
Query: 444 GR 445
+
Sbjct: 365 SK 366
>gi|420865738|ref|ZP_15329127.1| NADH dehydrogenase [Mycobacterium abscessus 4S-0303]
gi|420870532|ref|ZP_15333914.1| NADH dehydrogenase [Mycobacterium abscessus 4S-0726-RA]
gi|420874976|ref|ZP_15338352.1| NADH dehydrogenase [Mycobacterium abscessus 4S-0726-RB]
gi|420988380|ref|ZP_15451536.1| NADH dehydrogenase [Mycobacterium abscessus 4S-0206]
gi|421040431|ref|ZP_15503439.1| NADH dehydrogenase [Mycobacterium abscessus 4S-0116-R]
gi|421045330|ref|ZP_15508330.1| NADH dehydrogenase [Mycobacterium abscessus 4S-0116-S]
gi|392064454|gb|EIT90303.1| NADH dehydrogenase [Mycobacterium abscessus 4S-0303]
gi|392066451|gb|EIT92299.1| NADH dehydrogenase [Mycobacterium abscessus 4S-0726-RB]
gi|392070002|gb|EIT95849.1| NADH dehydrogenase [Mycobacterium abscessus 4S-0726-RA]
gi|392182659|gb|EIV08310.1| NADH dehydrogenase [Mycobacterium abscessus 4S-0206]
gi|392221359|gb|EIV46882.1| NADH dehydrogenase [Mycobacterium abscessus 4S-0116-R]
gi|392234783|gb|EIV60281.1| NADH dehydrogenase [Mycobacterium abscessus 4S-0116-S]
Length = 393
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 94/401 (23%), Positives = 158/401 (39%), Gaps = 71/401 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGE-VDA 136
+ P + +LGGG+ G A RL Q + LV+ E FV + L++ +G +
Sbjct: 4 QHPHVVVLGGGYAGTMAANRL-----QQHTNIDITLVNPREEFVHRLRLHQFAAGTGIAT 58
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
E AP RV+L+ S + ++ P + LESG +++YD+L+
Sbjct: 59 AEYAP------------MLGKRVRLVVDS-AVRIDAPARM-----IRLESGDVLDYDYLI 100
Query: 197 LSLGAEPKLDV-VPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
++G+ VPG +EFA+P S E A R+ L +V+
Sbjct: 101 YAIGSTDSTAAGVPGLSEFAYPLSEFESAQRLRVALE---------------TSGPDVQI 145
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKN 315
T+ G G A+ R V+LV G G+ + P I A +
Sbjct: 146 TVVGAGLTGIEMASELADLGRHVRLVCG---------GQLAPTFGAPARRTIAQWFARRR 196
Query: 316 SD----KYILELQP-AIKGLESQIFEADLVLWT--VGSKPLLPHVEPPNNRLHDLPLNAR 368
D + E++P ++ + + + +W G L H L ++A
Sbjct: 197 VDVLENTSVTEVRPDSVVLADGTALSSTITVWAGGFGVPALAAH--------SGLSVDAD 248
Query: 369 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
G+ TD+TL RI GD+ ++ P + A A + + + D
Sbjct: 249 GRLLTDDTLTSMDDGRIIGAGDAVT---TTSLPTRMSCYTANTTGAAAADTVLSRLADTE 305
Query: 429 LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
PFR +G+ + LGR +A + + + D P+G AR
Sbjct: 306 PAPFRLAYVGQCLSLGRGNAVLQFTRKD----DSPVGAHAR 342
>gi|365872199|ref|ZP_09411738.1| putative oxidoreductase [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|421051305|ref|ZP_15514299.1| NADH dehydrogenase [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|363994539|gb|EHM15760.1| putative oxidoreductase [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|392239908|gb|EIV65401.1| NADH dehydrogenase [Mycobacterium massiliense CCUG 48898]
Length = 393
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 96/401 (23%), Positives = 161/401 (40%), Gaps = 71/401 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGE-VDA 136
+ P + +LGGG+ G A RL Q + + LV+ E FV + L++ +G +
Sbjct: 4 QHPHVVVLGGGYAGTMAANRL-----QQNTNIDITLVNPREEFVHRLRLHQFAAGTGIAT 58
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
E AP RV+L+ S + ++ P + LESG +++YD+L+
Sbjct: 59 AEYAP------------MLGKRVRLVVDS-AVRIDAPARL-----IRLESGDVLDYDYLI 100
Query: 197 LSLGAEPKLDV-VPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
++G+ VPG +EFA+P S E A R+ LE G +V+
Sbjct: 101 YAIGSTDSTAAGVPGLSEFAYPLSEFESAQRLRVA-----------LETSG----PDVQI 145
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKN 315
T+ G G A+ R V+LV G G+ + P I A +
Sbjct: 146 TVVGAGLTGIEMASELADLGRHVRLVCG---------GQLAPTFGAPARRTIAQWFARRR 196
Query: 316 SD----KYILELQP-AIKGLESQIFEADLVLWT--VGSKPLLPHVEPPNNRLHDLPLNAR 368
D + E++P ++ + + + +W G L H L ++A
Sbjct: 197 VDVLENTSVTEVRPDSVVLADGTALSSAITVWAGGFGVPALAAH--------SGLSVDAD 248
Query: 369 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
G+ TD+TL RI GD+ ++ P + A A + + + D
Sbjct: 249 GRLLTDDTLTSMDDGRIVGAGDAVT---TTSLPTRMSCYTANTTGAAAADTVLSRLADTE 305
Query: 429 LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
PFR +G+ + LGR +A + + + D P+G AR
Sbjct: 306 PAPFRLAYVGQCLSLGRGNAVLQFTRKD----DSPVGAHAR 342
>gi|388569064|ref|ZP_10155471.1| putative NADH dehydrogenase [Hydrogenophaga sp. PBC]
gi|388263623|gb|EIK89206.1| putative NADH dehydrogenase [Hydrogenophaga sp. PBC]
Length = 432
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 145/352 (41%), Gaps = 30/352 (8%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
+V LVD+ ++KP L+E+ +G +D + + L + F K L +
Sbjct: 29 RVTLVDRQLFHIWKPSLHEVAAGTLDIHQEGLSYEMLAYDNRFTFCLGAFKGLNADQRVI 88
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
+ HG ++ E L+ Y LVL+LG+ VPGAAE + + DA R +
Sbjct: 89 TVDAVHDEHGEQLIPERTLV--YGQLVLALGSTANHFNVPGAAEHSMSLNQPADAERFRQ 146
Query: 230 KLSELERRNFERLEEKGIVQAINVETTICPTGTPGN------REAAL--------KVLSA 275
++ +L E + G A+ V I G G REA+ ++
Sbjct: 147 RMLKL-LTAAELRKSAGAEAAVRV--VIIGGGATGVELAAELREASQVHTRYGFRRLDGL 203
Query: 276 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQI 334
R VQL L R + V + + A + + + + P A+ E +
Sbjct: 204 RDVQLTL--IEGADRILAPLPERVSASATALLRERAVNVVTGCRVAGVTPDAVTDTEGRS 261
Query: 335 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 394
F ADLV+W G K P LP+ GQ E + L VKG I ALGD +A
Sbjct: 262 FPADLVVWAAGIKA------PALLGEQGLPVTRSGQVEVEANLRVKGQDAIHALGDCAAC 315
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL--LPFRFQNLGEMMILG 444
G +P AQ A QQA + L R L P+R+++ G ++ LG
Sbjct: 316 ALPGGGLVPPRAQAAHQQASYLAKRLRDLSEGRALDNEPYRYRDHGSLVSLG 367
>gi|424854556|ref|ZP_18278914.1| NADH dehydrogenase [Rhodococcus opacus PD630]
gi|356664603|gb|EHI44696.1| NADH dehydrogenase [Rhodococcus opacus PD630]
Length = 471
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 159/404 (39%), Gaps = 52/404 (12%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + R+ I+G GFGGL+ A L VL+VD++ +F+P+LY++ +G +
Sbjct: 19 EARHRVVIIGSGFGGLFAAKALRR------ADVDVLVVDRTSHHLFQPLLYQVATGILSE 72
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EIAP +L V L +D + TH G EYD L+
Sbjct: 73 GEIAPSTRMVLKKQS----NASVMLGDVTDIDLAARTINSTHQGRT-----TTTEYDSLI 123
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVET 255
+S GA AE A +++DA + R L ER E+ V
Sbjct: 124 VSAGARQSYFGNDHFAEHAPGMKSIDDALELRGRILGAFERAELSTDPEERARLLTFVVV 183
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYF---VRCIRRVGEFEASVKQPESGAIPNIAA 312
PTG E A ++ LV Y R R V AS P G AA
Sbjct: 184 GAGPTGV----ETAGQIAELAHRTLVGAYRNIDTRDARIVLLDAASAVLPPFGDRLGSAA 239
Query: 313 DKNSDKYILE--LQPAIKGL------------ESQIFEADLVLWTVG--SKPLLPHVEPP 356
+ +K +E L A+ + E+ E+ +W+ G + PL +
Sbjct: 240 AERLEKIGVEVRLGAAVTDVDADGVTIKDGRGETVRIESACKVWSAGVEASPLARQLAEQ 299
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ L+ G+ E L V GH +F +GD A RD LP AQVA Q +A
Sbjct: 300 SG----AELDRAGRIAVREDLTVPGHREVFVIGDMMA-RDR----LPGVAQVAIQGGRYA 350
Query: 417 GWNLWAAINDRPL----LPFRFQNLGEMMILGRNDAAVSPSFVE 456
+ A R +PFR+++ G M + R +A V +E
Sbjct: 351 ARQISADAGGRATSPDRVPFRYRDKGSMATISRFNAVVKVGGIE 394
>gi|300690853|ref|YP_003751848.1| NADH dehydrogenase [Ralstonia solanacearum PSI07]
gi|299077913|emb|CBJ50552.1| NADH dehydrogenase [Ralstonia solanacearum PSI07]
gi|344167305|emb|CCA79515.1| NADH dehydrogenase [blood disease bacterium R229]
Length = 441
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 168/414 (40%), Gaps = 45/414 (10%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
+ +V+LVD++ ++KP+L+E+ +G +D +A G +F + +K L +
Sbjct: 37 RAARVVLVDRNPTHIWKPLLHEVAAGSMDPNTHQLEYAAQARWHGFEFQQGELKGLDRAA 96
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ G VL E + YD LVL++G+ VPG AE A A R
Sbjct: 97 KIITVSGCIDADGTEVLPERA--IAYDVLVLAIGSVTHFFGVPGTAEHAIALDAASQAER 154
Query: 227 VDRKLSELERRNFERLEEKGIVQA-INVETTICPTGTPGNREAA-----LKVLSAR---- 276
RKL R + G+ A V+ I G G +A VL+A
Sbjct: 155 FRRKLISACMR-----AQNGVGDARAQVDIAIVGAGATGVELSAELRNTAHVLAAYGLHK 209
Query: 277 -------KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ-PAIK 328
++ L+ G R + V + + + D + + ++E+ A+
Sbjct: 210 LDPRRDIRIHLIEG----SPRILAALSERVSAETTKLLHKLNVDVITGERVIEVTGSAVN 265
Query: 329 GLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFAL 388
+ ADL +W G + P LP+N GQ TL +G I+A
Sbjct: 266 TGSGKSIPADLTVWAAGIRA------PSILGELGLPVNKLGQVVVSRTLQAEGDDAIYAF 319
Query: 389 GD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 447
GD +S + +P AQ A QQA + L + +P+ PF F++LG ++ LG
Sbjct: 320 GDCASCPWPEASASVPPRAQAAHQQATYLYKALCRRLEGKPVEPFGFKDLGSLVSLGHFS 379
Query: 448 AAVSPSFVEGVTLDGPIGHSARKLAYLIRLP-TDEHRLKV-GVSWLTKSAIDSV 499
A G + G IG + + RL T +R+ V + + A+D+V
Sbjct: 380 AV-------GSLMGGLIGGTMFIEGMMARLMYTSLYRMHVMALHGFVRMALDTV 426
>gi|300913967|ref|ZP_07131284.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter sp. X561]
gi|300890652|gb|EFK85797.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter sp. X561]
Length = 594
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 91/415 (21%), Positives = 172/415 (41%), Gaps = 65/415 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G G+GG++ A +L +++D +++L+D+ L+E+ ++ +
Sbjct: 6 RIVIVGAGYGGVHAA-KLLHKKFKNDSNIEIILIDKKPYHTLLTDLHEVAGSRIEPDSVR 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDH--LGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ AN V+ D V+ + +G +G YD+L+L
Sbjct: 65 VYLHKIFANKKVEVIIDEVEKIDYEKQSVIGKDGEY----------------NYDYLILG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR-NFERLEEKGIVQAI------ 251
+G+EP +PG E+ F TLE A + + E+ R+ + E EK ++ +
Sbjct: 109 IGSEPCDFGIPGVFEYGFTVGTLEAAIKTREHIEEMFRKASVESNAEKKMLTFVVAGAGF 168
Query: 252 -NVET---------TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA--SV 299
+ET ++C + + + V+ A ++ + + +F A V
Sbjct: 169 TGIETAGELMEWTKSLCDKYHLDHNDVKIMVIEALN-TILPNLNAKLANKAAKFLAKKGV 227
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
+ + I +A D YI+ L+ K E ++WT G + N
Sbjct: 228 EVLTNAPIVEVAKD-----YIV-LKDGRK------IETKTLIWTCGVQ--------GNKC 267
Query: 360 LHD--LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
+ + L L R + +T+E + G I+ +GD A + G+P+P + A Q A+
Sbjct: 268 VENFGLELGRRSRVQTNEYMQAVGKENIYVIGD-LAYYELDGKPIPQIVETALQSAETVV 326
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
N+ A I PF+ + G M+ +G A + GV+L G + + + L
Sbjct: 327 HNIVADIKGGEKQPFKPKYHGFMVSIGSRYAVAE---LMGVSLTGFLAMAMKHLV 378
>gi|386389762|ref|ZP_10074570.1| NADH dehydrogenase [Haemophilus paraphrohaemolyticus HK411]
gi|385694917|gb|EIG25497.1| NADH dehydrogenase [Haemophilus paraphrohaemolyticus HK411]
Length = 426
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 150/346 (43%), Gaps = 32/346 (9%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
+VLL+D++ ++KP+L+E+ +G +D A + N F + + +
Sbjct: 31 EVLLIDRNATHLWKPLLHEVATGSLDDGTDAVSYRAHATNHHFHFQQGTLTGVNREQKEI 90
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
+ P+ +G ++ E + YD L+L++G++ G AE + E A +
Sbjct: 91 LLEPLLDENGEVLVKERH--IAYDKLILAIGSKSNDFGTKGVAEHCIFLDSSEQAKHFQK 148
Query: 230 KLSELERRNFERLEEKGIVQAINVETTICPTGTPG-NREAALKVLSARKVQLVLGYFVRC 288
++ EL R F E+K +V+ I G G A L + + G R
Sbjct: 149 RMLELFLR-FSHSEDK------DVKIAIVGGGATGIELSAELYNAVSHLNEYGFGKLNRA 201
Query: 289 IRRVGEFEAS-------VKQPESGAIPNI---AADKNSDKYILE-LQPAIKGLESQIFEA 337
+V EA ++ S A+ + D + + I E ++ + + + EA
Sbjct: 202 SLKVALVEAGPRLIPALTEKVSSSALSELRKAGVDVHLNTMITEAVEDGLITKDGEKIEA 261
Query: 338 DLVLWTVGSKP--LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 395
DL++W G K + + NRL+ + + Q D+ +F +GD +AL
Sbjct: 262 DLMVWAAGVKAPDFIKEFDFETNRLNQIEITDLMQTTVDKD--------VFVIGDCAALI 313
Query: 396 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 441
+G+P+P AQ A Q A G N+ A ++ + + PF+F + G ++
Sbjct: 314 -QNGKPIPPRAQAAHQMATQCGKNIVALLDGKEMKPFKFNDKGSLL 358
>gi|411007765|ref|ZP_11384094.1| NADH dehydrogenase [Streptomyces globisporus C-1027]
Length = 475
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 106/444 (23%), Positives = 188/444 (42%), Gaps = 68/444 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKK--PQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
RI ++GGG+ G+YTALRL+ + Q + ++++V ++P L E +G +
Sbjct: 2 RILVVGGGYVGMYTALRLQRKLKQRLRSGDAEIVVVTPEPYMTYQPFLPEAAAGSISPRH 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ +L + + + + + + +A GT LE G YD +V++
Sbjct: 62 VVVPLRRVLKDCTIVIGE--AQRVDHAKRTATVTTLATGEDGTGALEIG----YDEIVIA 115
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
G+ + +PG A+F F T+E+A + RN +++ +++ +
Sbjct: 116 PGSVSRTLPIPGLADFGIGFKTVEEAIGL---------RNH-------VIEQMDIASA-- 157
Query: 259 PTGTPGNREAALK----------VLSARKVQLVLGYFVRCIRRVGE-------FEASVK- 300
T P R+AAL V + +++ + Y R + EAS +
Sbjct: 158 -TRDPAIRDAALTFVFVGGGYAGVEALAELEDMARYTARYYHNIKPTDLKWILVEASGRI 216
Query: 301 QPESG-AIPNIAADKNSDKYI-LELQPAIKGLESQI--------FEADLVLWTVGSKPLL 350
PE G A+ A + + I + L+ + E ++ F ++WT G KP
Sbjct: 217 LPEVGEAMGTYAIGELRSRNIDVRLETRLDTCEDRVAALSDGSRFPTRTLVWTAGVKPA- 275
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS----GRPLPATA 406
P DLPL RG+ TL V+ P +A GD++A+ D + GR A
Sbjct: 276 -----PLLAATDLPLTERGRLRCTATLGVEDMPHAWAAGDAAAVPDLTASEPGRETAPNA 330
Query: 407 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGH 466
Q A +QA N+ A+++ +PL +R G + LG + + V G L G
Sbjct: 331 QHAVRQAKVLADNVLASVDGKPLTEYRHAYAGSVASLGLHKGV---AHVYGRKLKGYPAW 387
Query: 467 SARKLAYLIRLPTDEHRLKVGVSW 490
++ +L R+PT + +V W
Sbjct: 388 LLHRIYHLSRVPTFNRKARVLAEW 411
>gi|258652530|ref|YP_003201686.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Nakamurella multipartita DSM 44233]
gi|258555755|gb|ACV78697.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Nakamurella multipartita DSM 44233]
Length = 445
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/399 (23%), Positives = 160/399 (40%), Gaps = 46/399 (11%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF-ADLLANTGVQFFKDRVKLLCP-SDHL 168
+ LVD+ F+P+LY++ + ++ ++ A +A V F + V+ + P + H+
Sbjct: 53 ITLVDRHTYNAFQPLLYQVATAGLNPGDVTFFLRATRMAQRNVSFRQAEVEGIDPGTQHI 112
Query: 169 GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV- 227
G G + YD+L+++ GA GA E + T A R+
Sbjct: 113 SFVG--------------GTGLHYDYLIIATGATTNYFGTKGAQENSLAIYTRAQALRLR 158
Query: 228 DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGN------REAALKV----LSARK 277
D+ + LE EE + + PTG R A+ L R+
Sbjct: 159 DKIFTNLEHAAAANTEEDLAIVVVGA----GPTGVEMAGALAELRNDAMATVYPELDPRR 214
Query: 278 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFE 336
+VL + + F ++ + A+ + + + E++P + + +
Sbjct: 215 THIVLVEMSDKV--LAPFAPPLRDFAARALRERGVELRLNTSVAEVRPDGVVLGGGEFLK 272
Query: 337 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD 396
A +V+W G P + LP G+ D+ L V G IFA+GD + L +
Sbjct: 273 AGVVVWATGV------TVPAAVKDWGLPQGRGGRITVDKDLRVTGFKNIFAVGDIALLPE 326
Query: 397 SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 456
PLP AQ A Q AG + A I RP PF + + G M +GR A ++
Sbjct: 327 ----PLPQLAQPALQGGQHAGKQVVALIAGRPTHPFHYHDKGTMATVGRRAAIADIQLIK 382
Query: 457 G--VTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTK 493
G + L G + A +++ L + +RL V+ TK
Sbjct: 383 GRSIRLTGTLAWLAWLFVHIVMLLGNRNRLATFVNLTTK 421
>gi|407649078|ref|YP_006812837.1| oxidoreductase [Nocardia brasiliensis ATCC 700358]
gi|407311962|gb|AFU05863.1| oxidoreductase [Nocardia brasiliensis ATCC 700358]
Length = 362
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 149/356 (41%), Gaps = 75/356 (21%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGE-VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHL 168
++ +VD + FV + L++ +G+ + AW+I +LLA + F + R + P+
Sbjct: 31 EITVVDPRQHFVERVRLHQQAAGQRISAWDIR----ELLARKEIGFVRARATAIDPA--- 83
Query: 169 GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD 228
G V L++G + YD LV +LG+ LD VPG AE A+ +T EDA D
Sbjct: 84 ----------GKRVFLDTGTELGYDTLVYALGSVADLDGVPGVAEHAYSVATPEDA---D 130
Query: 229 RKLSELERRNFERLEEKGIVQAINV-----ETTICPTGTPGNREAALKVLSARKVQLVLG 283
R ++ GI A + E + G+ EA LS R
Sbjct: 131 RFVAPDGTVVVVGGGSTGIELAAELGESRPEVRVLLLGS----EAPGAWLSPR----AQA 182
Query: 284 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLW 342
+ R + R+G + SD ++E+ + ++ + + EA +W
Sbjct: 183 HIRRVLERLG------------------VEIRSDAKVIEVTEQGVRLADGTLLEAAATVW 224
Query: 343 TVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS--------AL 394
T G + P + + ++ G+ TD TL HP I+A GD + AL
Sbjct: 225 TAGFRV------PDLAQRSGIAVDGMGRVHTDATLRSISHPEIYAAGDCAVMAGPGDRAL 278
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
R + LPA QV AD L A RPL RF+ +G+ M LGR + +
Sbjct: 279 RMACATALPAGRQV----ADAIAARLRGA-QPRPL---RFRYVGQAMSLGRRNGII 326
>gi|352095055|ref|ZP_08956158.1| NADH dehydrogenase (ubiquinone) [Synechococcus sp. WH 8016]
gi|351679066|gb|EHA62208.1| NADH dehydrogenase (ubiquinone) [Synechococcus sp. WH 8016]
Length = 504
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 102/437 (23%), Positives = 172/437 (39%), Gaps = 54/437 (12%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ P + I+GGGF G+ L + ++ L+D+ +F+P+LY++ +G V
Sbjct: 18 RNAPHVVIVGGGFAGVRACKALAQ------AEVRITLIDKRNFNLFQPLLYQVATGLVAP 71
Query: 137 WEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A L+ VQ VK L + +N S ++ YD L
Sbjct: 72 GDVATPLRQLVGKQRNVQVLLGEVKGL-DAKKRQIN-------------FSEKVISYDHL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAIN-VE 254
VL+ G+ FA P LE A + R+L E+ E+ A ++
Sbjct: 118 VLASGSGSTYFGHEEWRTFAPPMKILEHAQEIRRRL----LMAMEQAEQTPDPAARKFLQ 173
Query: 255 TTICPTGTPGNREAA------LKVLSARKVQ---------LVLGYFVRCIRRVGEFEASV 299
T + G P E A ++ R+ + +V+ R +R + E S+
Sbjct: 174 TVVIVGGGPTGCEMAGATSELMRNAMRREFKQLDPDDSRIIVIDPGDRLLRAMPE---SL 230
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGLES----QIFEADLVLWTVGSKPLLPHVEP 355
+ ++ + + +QP + + Q +A V+WT G +P H+
Sbjct: 231 SASAQKTLESLGVETLFKGRVQSMQPGEVSVGTPDGEQTIQAATVIWTAGVRP--SHLGK 288
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQAD 414
D L+ G+ VK HP I +GD S S+G PLP A A Q
Sbjct: 289 TLAASIDCALDRGGRVIVQPDFSVKDHPEIRVVGDLCSYKHTSTGNPLPGMAGPATQAGG 348
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYL 474
F G ++ A I R F++ + G M +L R A + G G G + A+L
Sbjct: 349 FVGKDIAAIIGGRQRPNFKWFDFGSMAVLDRVAAVAD---LRGFKFSGSPGWAVWAAAHL 405
Query: 475 IRLPTDEHRLKVGVSWL 491
+P E+R + + W+
Sbjct: 406 AFMPDRENRWSLLIKWM 422
>gi|299536093|ref|ZP_07049410.1| NADH dehydrogenase-like protein [Lysinibacillus fusiformis ZC1]
gi|424738592|ref|ZP_18167024.1| NADH dehydrogenase-like protein [Lysinibacillus fusiformis ZB2]
gi|298728517|gb|EFI69075.1| NADH dehydrogenase-like protein [Lysinibacillus fusiformis ZC1]
gi|422947431|gb|EKU41826.1| NADH dehydrogenase-like protein [Lysinibacillus fusiformis ZB2]
Length = 394
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/404 (23%), Positives = 157/404 (38%), Gaps = 82/404 (20%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG G+ G+ TAL + D+ K + +V+Q L+ L G + +A
Sbjct: 4 EIVILGAGYAGVLTALTARKYLSADEAK--ITVVNQFPTHQIITELHRLAGGTIAEGAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ + +V V L++G + YD LV+SLG
Sbjct: 62 LPLKKIFKGLDIDLHIAKVSKFNVDTK-------------KVDLDNGYTLTYDTLVVSLG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR----------------------- 237
++ +PG E + ++ DA ++++ + + +
Sbjct: 109 SQTGFFGIPGLEENSMVLKSVNDANKINKHIEDRIKAYAQSKDEADATIVIGGGGLTGVE 168
Query: 238 -------NFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 290
NF ++ K V +++ + EA K+L L+ +
Sbjct: 169 LVGEIVDNFPKIAAKHGVNFADLKIKLV--------EAGPKILPVLPDTLIQRATESLTK 220
Query: 291 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350
R EF P +G N+ + K+ + + A+ ++WT G PL
Sbjct: 221 RGVEFITGT--PVTGVDGNVISLKDREPIV----------------ANTLVWTGGVAPL- 261
Query: 351 PHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-ALRDSSGRPLPA-TAQ 407
P V L A RG+A +E L H +F +GD+S AL GRPL A TAQ
Sbjct: 262 PIVGESG-------LAADRGKATINEFLQSTSHEDVFVIGDASVALPADGGRPLYAPTAQ 314
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
VA+Q + AG+N++A ++ + F N G + LGR DA +
Sbjct: 315 VAWQMGECAGYNVFAQYKNQDMKAFSAVNSGTLASLGRKDAVAT 358
>gi|308050638|ref|YP_003914204.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Ferrimonas balearica DSM 9799]
gi|307632828|gb|ADN77130.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Ferrimonas balearica DSM 9799]
Length = 429
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 153/356 (42%), Gaps = 36/356 (10%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
K Q+ LVDQS+ ++KP+L+EL +G +D A + + G +F + + L +H
Sbjct: 29 KAQITLVDQSDHHIWKPLLHELATGSLDEGLNALDYRVHASQNGYRFEQGTLHALDQVNH 88
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
V P+ G VL E ++YD+LVL +GA +PG E E A +
Sbjct: 89 QIVLAPIYDNKGSEVLPERR--IDYDYLVLGVGAITNDFGIPGVKEHCDFLDLTEQAMGL 146
Query: 228 DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV- 286
+K+ R + + K + E TI G G E A ++ A GY +
Sbjct: 147 RKKILNRFLRYAKNHDHK------HFEITIVGAGATG-VEMAAEMHHAADTLRGYGYEIS 199
Query: 287 RCIRRVGEFEASVK---QPESGAIPNIAADK--------NSDKYILEL-QPAIKGLESQI 334
+ RV EA+ + + E I N A++ + I E+ + ++ + +
Sbjct: 200 EDLLRVTLVEAADRVLPRVEKPRICNAVAEELEKLGVVVKTHTRITEVTERGMQTADGEF 259
Query: 335 FEADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 392
+DL++W+ G P L + NR + + + Q +++ RIFA GD +
Sbjct: 260 LPSDLMIWSAGVMGHPFLTTLGLETNRANQILVKPNCQVPSND--------RIFAFGDCA 311
Query: 393 ALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP---LLPFRFQNLGEMMILGR 445
A G P Q A Q A G N+ + D P L + +++LG ++ L +
Sbjct: 312 ACPQPDGSFTPPRGQTARQMALMIGDNIQRLM-DNPNAELKEYVYKDLGSLVNLSK 366
>gi|255560820|ref|XP_002521423.1| Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial
precursor, putative [Ricinus communis]
gi|223539322|gb|EEF40913.1| Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial
precursor, putative [Ricinus communis]
Length = 546
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 117/477 (24%), Positives = 186/477 (38%), Gaps = 77/477 (16%)
Query: 63 SEDESASQTY-----TWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117
SE+E A Y T P +K PR+ +LG G + A R + D K V+ +
Sbjct: 88 SENEYAEPRYPGLEATKPGEK-PRVVVLGTG----WAACRF--MKGLDTKTYDVVCISPR 140
Query: 118 ERFVFKPMLYELLSGEVDAWEIA---PRFADLLANTGVQFF---------KDRVKLLCPS 165
VF P+L G ++ +A R LA +F D+ ++ C +
Sbjct: 141 NHMVFTPLLASTCVGTLEFRSVAEPVSRIQSALATGPNSYFYLASCMGVDTDKHEVYCET 200
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
++GG V YD LV++ GAEP + G E A+ + A
Sbjct: 201 ----------VSNGGLPQEPYRFKVAYDKLVIAAGAEPLTFGIKGVKEHAYFLREVNHAQ 250
Query: 226 RVDRKLSELERRNFERLEEKGIVQAINVETTIC------PTGTPGNREAALKVLSARKVQ 279
+ +KL N E GI + C PTG + E L R VQ
Sbjct: 251 EIRKKL----LLNLMLSENPGIPEEEKKRLLHCVVIGGGPTGVEFSGE--LSDFIMRDVQ 304
Query: 280 LVLGYFVRCIRR--------VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL- 330
+ I+ + F+ ++Q + + + + + + E+ P L
Sbjct: 305 ERYAHVKDHIKVTLIEANEILSSFDVGLRQYATNHLTK-SGVRLARGVVKEVHPKKLALS 363
Query: 331 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 390
+ L++W+ G P + DLP + G+ DE L V +FALGD
Sbjct: 364 DGTEVPYGLLVWSTGVGP------SQFVKSLDLPKSPGGRIGIDEWLRVPSVEDVFALGD 417
Query: 391 SSALRDSSGRP-LPATAQVAFQQADF-----------AGWNLWAAINDRPLLPFRFQNLG 438
+ + +GRP LPA AQVA +Q + G + A + R PF ++++G
Sbjct: 418 CAGFLEQTGRPVLPALAQVAERQGKYLVGLFNKIGKETGGKAFRAKDVRLGDPFVYKHMG 477
Query: 439 EMMILGRNDAAV---SPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 492
M +GR A V +G++L G + AYL R+ + +R V V+W T
Sbjct: 478 SMASVGRYKALVDLRQSKDAKGLSLAGFFSWLIWRSAYLTRVVSWRNRFYVAVNWAT 534
>gi|78063830|ref|YP_373738.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. 383]
gi|77971715|gb|ABB13094.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. 383]
Length = 452
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 163/385 (42%), Gaps = 26/385 (6%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PRI I+GGG GGL+ A RL V + + +V+LVD+ +KP+L+E SG D
Sbjct: 17 PRIVIVGGGAGGLHLATRLGDTVGRRGQA-EVVLVDRYPTHFWKPLLHEAASGHRDPASH 75
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+A G +F + ++ + + + G +L + L +YD LVL++
Sbjct: 76 TIEYAAQAKRHGFRFVQGALQQVDRAARTATIAAVQDADGTEILPQREL--DYDDLVLAV 133
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICP 259
G+ VPGAA A P L+ A RK + E++ +A + +
Sbjct: 134 GSVTNFFNVPGAARHALPLENLDQAEDFRRKFLAACTKANHLAEQQPARRAAPICINVIG 193
Query: 260 TGTPGNREAA-----LKVLSARKVQLVLG---YFVRCI----RRVGEFEASVKQPESGAI 307
G G AA ++ L+ + + ++ +R I R + + + +
Sbjct: 194 AGATGVELAAALRDSIQQLTTYRFKALVSARDVHIRLIEGGPRILPALDERLSGKMHAQL 253
Query: 308 PNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLP 364
+ D +D + E+ A+ + +D+ +W G V P ++ D+
Sbjct: 254 RALNVDVLTDTRVAEVGADAVTTSTGERLASDITIWAAG-------VAGPAFLRQIGDIA 306
Query: 365 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP-LPATAQVAFQQADFAGWNLWAA 423
LN Q +TL P ++A GD +A + LP AQVA+QQA +
Sbjct: 307 LNRSNQVIVTDTLQTPDDPHVYAFGDCAACPTAGANGFLPPRAQVAYQQAVYLVNAFARR 366
Query: 424 INDRPLLPFRFQNLGEMMILGRNDA 448
+ +P+ F F++ G ++ LG A
Sbjct: 367 VAGKPVAGFTFRDAGTVVSLGHAGA 391
>gi|297196338|ref|ZP_06913736.1| dehydrogenase [Streptomyces pristinaespiralis ATCC 25486]
gi|297153179|gb|EFH32192.1| dehydrogenase [Streptomyces pristinaespiralis ATCC 25486]
Length = 447
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 116/438 (26%), Positives = 190/438 (43%), Gaps = 66/438 (15%)
Query: 86 GGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA----- 140
G GF G + A R S +D+ +V+L++ ++ F++ P+L ++ +G ++ +
Sbjct: 16 GAGFAG-FQAARTLSRTLRDEA--EVVLLNPTDYFLYLPLLPQVAAGILEPRRVTVSLPG 72
Query: 141 --PRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
PR +L TGV V P GG+ L+ YD LVL
Sbjct: 73 SLPRVRLVLGRATGVDLEGRYVHYEGPE-------------GGSGRLD------YDRLVL 113
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE-RRNFERLEEKGIVQAINVET 255
++G+ KL VPG AE A F L +A + D ++E E +EE+ +
Sbjct: 114 AVGSVNKLLPVPGVAEHAHGFRGLPEALYLRDHVTRQMELAATAETVEERTARRTF---- 169
Query: 256 TICPTGTPGNREAALKVLSARKV--QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 313
+ G G AA L R + +L G+ R + A PE + AD
Sbjct: 170 VVVGAGYTGTEVAAQGALFTRALGQRLRTGHPEPPPRWILVDIAERVLPELDRKLSDTAD 229
Query: 314 KNSDKYILELQPAIKGLESQIFEADL----------VLWTVGSKPLLPHVEPPNNRLHDL 363
+ + +E++ E+ A L ++W VG +P +P + + L
Sbjct: 230 RVLRERGVEVRTRTSVKEATASGALLDDGDDIATRTLVWCVGVRP-----DPLVSEV-GL 283
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPATAQVAFQQADFAGWNLW 421
P+ RG+ D L V GHP +FA GD++A+ D + G P TAQ A +Q AG N+
Sbjct: 284 PVE-RGRLVVDSRLTVPGHPEVFACGDAAAVPDVTRPGEYTPMTAQHASRQGRTAGVNVA 342
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
A++ + +LG + LG AA +P V L GP+ + + +L +P +
Sbjct: 343 ASLGRGTARAYSHHDLGFAVDLGGVKAAANPL---AVALSGPLAGAVTRGYHLAAMPGN- 398
Query: 482 HRLKVGVSWLTKSAIDSV 499
R++V W A+D+V
Sbjct: 399 -RVRVAADW----ALDAV 411
>gi|45655611|ref|YP_003420.1| NADH dehydrogenase [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|421086668|ref|ZP_15547516.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. HAI1594]
gi|421103876|ref|ZP_15564472.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Icterohaemorrhagiae str. Verdun LP]
gi|45602582|gb|AAS72057.1| NADH dehydrogenase [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|410366357|gb|EKP21749.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Icterohaemorrhagiae str. Verdun LP]
gi|410430697|gb|EKP75060.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira santarosai
str. HAI1594]
Length = 422
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/432 (18%), Positives = 173/432 (40%), Gaps = 50/432 (11%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ + ++ ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 ESNQKKVVVIGAGFGGLQAVKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + K+ +L + + + + YD+L
Sbjct: 58 PADIAIPTRSLVGES-----KNVTVVLGEATKIDLKTKTVYYQNTST--------NYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI-NVE 254
+LS GA ++ L+DA ++ KL +FE+ E G + + ++
Sbjct: 105 ILSAGARSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKSLL 160
Query: 255 TTICPTGTPGNREAALKV--LSARKVQLVLGYFVRCIRRVGEFEASVK-----QPESGAI 307
+ G P E A + LS + ++ + ++ EAS + P G
Sbjct: 161 NYVIIGGGPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLIEASPRLLMTFDPSLGEF 220
Query: 308 PNIAADKN-----SDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH- 361
++ + ++++ LE ++ V+W G + N +
Sbjct: 221 TKKRLERRGVEVLTGTRVIDINERGVQLEGKMIPTQTVIWAAGVQA---------NSIAA 271
Query: 362 --DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
D+ L+ G+ DE ++GH +F +GD ++ RPLP + VA QQ +
Sbjct: 272 TLDVTLDRGGRVIVDEFCNIEGHSEVFVIGDIASYSKGLERPLPGVSPVAMQQGRYVASL 331
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ + ++ PF + + G M +GR DA ++ + G G A +L
Sbjct: 332 IQNDLKNKKRKPFHYIDKGSMATIGRTDAVAQVGILK---MKGLFGWLAWLFVHLFYQVG 388
Query: 480 DEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 389 FKNKITILITWV 400
>gi|170691112|ref|ZP_02882278.1| NADH dehydrogenase [Burkholderia graminis C4D1M]
gi|170144361|gb|EDT12523.1| NADH dehydrogenase [Burkholderia graminis C4D1M]
Length = 448
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 164/383 (42%), Gaps = 35/383 (9%)
Query: 92 LYTALRLESLVWQDDK---KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLA 148
L A RL ++K + QV LVD++ ++KP+L+E+ +G +D + +A
Sbjct: 14 LELATRLGDRYGHNNKAGTRAQVTLVDRNPTHIWKPLLHEVAAGSMDPFTQELEYAAQAR 73
Query: 149 NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVV 208
G +F + + L ++ G + G +L L EYD L++++G+ V
Sbjct: 74 WHGFEFQQGELTGLDRANKRLTLGTVLDDDGAELLPVRQL--EYDTLIIAIGSTTAFFGV 131
Query: 209 PGAAEFAFPFSTLEDACRVDRKL----SELERRNFERLEEK-GIVQAIN--VETTICPTG 261
GA EF+ T+ A R ++L E + E +E G + ++ I G
Sbjct: 132 KGAPEFSLALDTVSQAERFRKRLIAACMRAEHQAHEPVESGPGTSPSTEPRIQVAIVGGG 191
Query: 262 TPGNREAA-----LKVLSA---------RKVQLVLGYFVRCIRRVGEFEASVKQPESGAI 307
G +A +VLSA V +VL R + + V + +
Sbjct: 192 ATGVELSAELRNTAQVLSAYGLHKLDPRHDVGIVL--IEAGPRILPALQERVSTATAELL 249
Query: 308 PNIAADKNSDKYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 366
+ + + + E+ P I+ + ADL +W G + P + ++L LP+N
Sbjct: 250 TKLGVRLMTSETVAEVAPGIIRTASGKTVRADLTVWAAGIRA--PAIL---SQLDGLPVN 304
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAIN 425
GQ TL + +FALGD +A + + +P AQ A QQA F L A +
Sbjct: 305 RLGQLNVRRTLQTEIDDNVFALGDCAACPWPGNEKNVPPRAQAAHQQASFLLKALAARLE 364
Query: 426 DRPLLPFRFQNLGEMMILGRNDA 448
+RPL F +++ G ++ LG A
Sbjct: 365 NRPLPEFTYRDFGSLVSLGHFSA 387
>gi|387907200|ref|YP_006337536.1| NADH dehydrogenase (quinone) [Blattabacterium sp. (Blaberus
giganteus)]
gi|387582093|gb|AFJ90871.1| NADH dehydrogenase (quinone) [Blattabacterium sp. (Blaberus
giganteus)]
Length = 432
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/401 (23%), Positives = 158/401 (39%), Gaps = 74/401 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GF GL A +L K QV+L+D++ F P+LY++ + ++ IA
Sbjct: 11 RVVIIGAGFAGLQVAKKLRR------DKFQVVLIDKNNYHTFHPLLYQVATAGLEPDSIA 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+++ T FF+ L ++ T+ G + YD+L+++ G
Sbjct: 65 HSIRNIIKKTKNFFFR-----LAKVHYINTKEQRIYTNIGR--------LSYDYLIVATG 111
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFER-LEEKGIVQAINVETTICP 259
+ FA P ++ +A L + ++FE L K + + T +
Sbjct: 112 SVTNYFGNKNIESFALPMKSIPEALN----LRSVILQDFETALLTKNDKEKKRLMTFVIV 167
Query: 260 TGTPGNREAALKVLSARK-----------VQLVLGYFVRCIRRV--GEFEASVKQ----- 301
G P E A + +K +Q + + ++ R+ G E S KQ
Sbjct: 168 GGGPTGVELAGALAEMKKYVLPHDYPDLDIQHMNIHLLQATSRLLDGMSEQSAKQAYKNL 227
Query: 302 PESGAI---PNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL----PHVE 354
E G I ++ D N + +E I E+ V+W G K + +
Sbjct: 228 KELGVIIWLNSLVKDYNGEVVFMEKNKKI--------ESSNVIWAAGVKGAILKGFIKED 279
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP--LPATAQVAFQQ 412
NR+ D L + IFA+GD + + ++ P P TAQ A QQ
Sbjct: 280 VKGNRI-----------LVDNYLKTIKYNNIFAIGDVAYMNENKHYPNGHPMTAQPAIQQ 328
Query: 413 ADFAGWNLWAAI----NDRPLLPFRFQNLGEMMILGRNDAA 449
+ NL + N + PF ++NLG M +GRN A
Sbjct: 329 GNHLAKNLNCFLFDNDNKTKMKPFVYKNLGSMATIGRNKAV 369
>gi|108761762|ref|YP_628657.1| pyridine nucleotide-disulfide oxidoreductase [Myxococcus xanthus DK
1622]
gi|108465642|gb|ABF90827.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Myxococcus xanthus DK 1622]
Length = 470
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 149/386 (38%), Gaps = 53/386 (13%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA- 140
+ +LG GF GL A L V ++DQ +F+P+LY++ + + +IA
Sbjct: 15 VVVLGAGFAGLTAAKALAR-----HSALYVTVLDQRNHHLFQPLLYQVATSGLSPADIAV 69
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
P + V RV + + V G E + + YD+LV++ G
Sbjct: 70 PIRSQFARKPNVSVHLGRVTWVNLKERW-VGG------------EGDVRLRYDYLVIACG 116
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTICP 259
A+ +FA TLE A + R+ LS E+ ER E+ V P
Sbjct: 117 AQHSYFGKSEWEDFAPGLKTLEQATELRRRILSAFEQAENERDAERQRALLSFVVVGAGP 176
Query: 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA------------- 306
TG L+ + VR RR+ A V E+G
Sbjct: 177 TGVE---------LAGAIADISRTVLVRDFRRIKPSRARVFLVEAGPRILPSFSEKLGVR 227
Query: 307 ----IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + + ++ + + L S+ + V+W G + R
Sbjct: 228 AHRDLAALGVEVRTEARVTAVDAEGVMLGSERLASRTVVWAAGVQAEY------LTRGLG 281
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
+PL+ G+ + L + GHP +FA GD + + + G+ +P A A Q N+ A
Sbjct: 282 VPLDRAGRVQVAADLTLPGHPEVFAAGDVAHV-ELDGKLVPGVAPAAMQMGRAVARNVLA 340
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDA 448
+ RP PFR+++ G M +G++ A
Sbjct: 341 DLRGRPRTPFRYKDKGAMATIGKHRA 366
>gi|169631277|ref|YP_001704926.1| putative oxidoreductase [Mycobacterium abscessus ATCC 19977]
gi|420911847|ref|ZP_15375159.1| NADH dehydrogenase [Mycobacterium abscessus 6G-0125-R]
gi|420923468|ref|ZP_15386764.1| NADH dehydrogenase [Mycobacterium abscessus 6G-0728-S]
gi|420929129|ref|ZP_15392408.1| NADH dehydrogenase [Mycobacterium abscessus 6G-1108]
gi|420968818|ref|ZP_15432021.1| NADH dehydrogenase [Mycobacterium abscessus 3A-0810-R]
gi|420979467|ref|ZP_15442644.1| NADH dehydrogenase [Mycobacterium abscessus 6G-0212]
gi|420984851|ref|ZP_15448018.1| NADH dehydrogenase [Mycobacterium abscessus 6G-0728-R]
gi|421009390|ref|ZP_15472499.1| NADH dehydrogenase [Mycobacterium abscessus 3A-0119-R]
gi|421015024|ref|ZP_15478099.1| NADH dehydrogenase [Mycobacterium abscessus 3A-0122-R]
gi|421020121|ref|ZP_15483177.1| NADH dehydrogenase [Mycobacterium abscessus 3A-0122-S]
gi|421025487|ref|ZP_15488530.1| NADH dehydrogenase [Mycobacterium abscessus 3A-0731]
gi|421031763|ref|ZP_15494793.1| NADH dehydrogenase [Mycobacterium abscessus 3A-0930-R]
gi|421036638|ref|ZP_15499655.1| NADH dehydrogenase [Mycobacterium abscessus 3A-0930-S]
gi|169243244|emb|CAM64272.1| Putative oxidoreductase [Mycobacterium abscessus]
gi|392113841|gb|EIU39610.1| NADH dehydrogenase [Mycobacterium abscessus 6G-0125-R]
gi|392126117|gb|EIU51868.1| NADH dehydrogenase [Mycobacterium abscessus 6G-1108]
gi|392128121|gb|EIU53871.1| NADH dehydrogenase [Mycobacterium abscessus 6G-0728-S]
gi|392163745|gb|EIU89434.1| NADH dehydrogenase [Mycobacterium abscessus 6G-0212]
gi|392169847|gb|EIU95525.1| NADH dehydrogenase [Mycobacterium abscessus 6G-0728-R]
gi|392194996|gb|EIV20615.1| NADH dehydrogenase [Mycobacterium abscessus 3A-0119-R]
gi|392198096|gb|EIV23710.1| NADH dehydrogenase [Mycobacterium abscessus 3A-0122-R]
gi|392205844|gb|EIV31427.1| NADH dehydrogenase [Mycobacterium abscessus 3A-0122-S]
gi|392209010|gb|EIV34582.1| NADH dehydrogenase [Mycobacterium abscessus 3A-0731]
gi|392219645|gb|EIV45170.1| NADH dehydrogenase [Mycobacterium abscessus 3A-0930-R]
gi|392220490|gb|EIV46014.1| NADH dehydrogenase [Mycobacterium abscessus 3A-0930-S]
gi|392244474|gb|EIV69952.1| NADH dehydrogenase [Mycobacterium abscessus 3A-0810-R]
Length = 393
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/401 (23%), Positives = 158/401 (39%), Gaps = 71/401 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGE-VDA 136
+ P + +LGGG+ G A RL Q + LV+ E FV + L++ +G +
Sbjct: 4 QHPHVVVLGGGYAGTMAANRL-----QQHTNIDITLVNPREEFVHRLRLHQFAAGTGIAT 58
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
E AP RV+L+ S + ++ P + LESG +++YD+L+
Sbjct: 59 AEYAP------------MLGKRVRLVVDS-AVRIDAPARM-----IRLESGDVLDYDYLI 100
Query: 197 LSLGAEPKLDV-VPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
++G+ VPG +EFA+P S E A R+ L +V+
Sbjct: 101 YAIGSTDSTAAGVPGLSEFAYPLSEFESAQRLRVALE---------------TSGPDVQI 145
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKN 315
T+ G G A+ R V+LV G G+ + P I A +
Sbjct: 146 TVVGAGLTGIEMASELADLGRHVRLVCG---------GQLAPTFGAPARRTIAQWFARRR 196
Query: 316 SD----KYILELQP-AIKGLESQIFEADLVLWT--VGSKPLLPHVEPPNNRLHDLPLNAR 368
D + E++P ++ + + + +W G L H L ++A
Sbjct: 197 VDVLENTSVTEVRPDSVVLADGTALSSAITVWAGGFGVPALAAH--------SGLSVDAD 248
Query: 369 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
G+ TD+TL RI GD+ ++ P + A A + + + D
Sbjct: 249 GRLLTDDTLTSMDDGRIIGAGDAVT---TTSLPTRMSCYTANTTGAAAADTVLSRLADTE 305
Query: 429 LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
PFR +G+ + LGR +A + + + D P+G AR
Sbjct: 306 PAPFRLAYVGQCLSLGRRNAVLQFTRKD----DSPVGAHAR 342
>gi|228473625|ref|ZP_04058377.1| NADH:quinone dehydrogenase [Capnocytophaga gingivalis ATCC 33624]
gi|228274997|gb|EEK13807.1| NADH:quinone dehydrogenase [Capnocytophaga gingivalis ATCC 33624]
Length = 440
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 95/415 (22%), Positives = 166/415 (40%), Gaps = 73/415 (17%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P PRI ++G GFGG+ +L + + QV+L++++ F+P+LY++ + +
Sbjct: 10 PTVNLPRIVVIGAGFGGINIVKQL------NFSQMQVVLINKTNYHTFQPLLYQVATAGL 63
Query: 135 DAWEIAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ IA + F+ VK + P D + + + YD
Sbjct: 64 EPDSIAHSVRSIFKKENQFHFRIAEVKKINP-DKKNIETDLGE-------------LSYD 109
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL----------SELERRNFERLE 243
+LV++ G++ ++A P T+ +A + + ++LE RN L
Sbjct: 110 YLVIATGSQTNFYGNANIEKYAMPMKTVPEAIDMRSLIIQNLEAAILTNDLEERN--SLM 167
Query: 244 EKGIVQA-----------INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR- 291
IV +++ I PT P L RK+ + + ++ R
Sbjct: 168 NFVIVGGGPTGVELAGAFAELKSHILPTDYPD--------LDIRKMNV---HLIQADPRL 216
Query: 292 -VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350
VG E S Q + + + ++ + + + FE ++WT G K
Sbjct: 217 LVGMGEKS-SQKAKEYLEKMGVTIWFNTFVKDYDGSNVVTNTHHFETRTLIWTAGVK--- 272
Query: 351 PHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQ 407
+ + LP + G+ +E VKG IFA+GD + + D + P AQ
Sbjct: 273 ------GSTIEGLPQESIQFGRYIVNEFNEVKGCENIFAIGDIACMISDKYPKGHPMVAQ 326
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 462
A QQ G NL IN++ + PF + + G M +GRN A V V G+ G
Sbjct: 327 PAIQQGKLLGKNLKRKINNKSMTPFSYFDKGSMATVGRNKAVVE---VAGMRFSG 378
>gi|381199685|ref|ZP_09906831.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Sphingobium yanoikuyae XLDN2-5]
Length = 441
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 170/401 (42%), Gaps = 58/401 (14%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
PDKK +I I+GGG GL A +L + + K+ ++L+D++ ++KP+L+E+ +G +
Sbjct: 5 PDKKT-QIVIVGGGAAGLELARKLGARYGR--KRHDIILIDRNRTHIWKPLLHEVATGSL 61
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
DA + G ++ ++ + + P+ G V+ S V YD+
Sbjct: 62 DASLDEVGYRSHCHRWGYRYLYGTLQGIDRTARRVHIAPVFDPKGREVV--SAHSVRYDY 119
Query: 195 LVLSLGAEPKLDVVPGAAEF-----------AFPFSTLEDACRVDRKLSELERRNFERLE 243
LVL+ G+ PG A+ +F L+ RV R +S +
Sbjct: 120 LVLAYGSVTNDFGTPGVADNCLFLDSRAQADSFRDQLLDHCLRVSRAMSADPASD----- 174
Query: 244 EKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPE 303
V I G G E A ++ +A LGY+ + V E
Sbjct: 175 -------ARVRIAIVGGGATGV-ELAAELYNAADA---LGYY--GLEVFDRQRLDVTLLE 221
Query: 304 SG-----AIPNIAADKNSDKYIL---ELQPAI-------KGLESQ---IFEADLVLWTVG 345
+G A+P+ AD ++ + +++ + +G+E++ ADL +W G
Sbjct: 222 AGPRILPALPDRLADAAREELEVLGVKVRAGVAVTASTPEGMETKDGGFVPADLQVWAAG 281
Query: 346 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPA 404
K + L L L+ GQ TL R+FA+GD +S + + RP+P
Sbjct: 282 VK-----AAAIRDGLDGLELSRAGQVIVRPTLQSLADDRVFAMGDCASYMPQGADRPIPP 336
Query: 405 TAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
AQ A Q AD NL + DRPL F +++ G ++ L R
Sbjct: 337 RAQAAHQMADTVFANLGRLMADRPLKSFVYKDHGSLVSLSR 377
>gi|392963239|ref|ZP_10328665.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans DSM
17108]
gi|421056797|ref|ZP_15519714.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans B4]
gi|421060884|ref|ZP_15523300.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans B3]
gi|421065621|ref|ZP_15527343.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans A12]
gi|421069382|ref|ZP_15530554.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pelosinus fermentans A11]
gi|392437977|gb|EIW15839.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans B4]
gi|392450402|gb|EIW27455.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pelosinus fermentans A11]
gi|392451063|gb|EIW28057.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans DSM
17108]
gi|392453647|gb|EIW30516.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans B3]
gi|392458482|gb|EIW35012.1| Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding
domain-containing protein [Pelosinus fermentans A12]
Length = 420
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 100/439 (22%), Positives = 177/439 (40%), Gaps = 69/439 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K P I I+G GFGG+ TA L + ++ L+D+ +F+P+LY++ + +
Sbjct: 8 KPPHIVIIGAGFGGIRTARALAK------HEVKITLIDKYNYHLFQPLLYQVATAGLSVD 61
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA P A V F +L SD + + + + G + YD+LV
Sbjct: 62 DIAYPVRAIFRDQKNVDF-----RLAEVSD-VDFDNKVVTMNTGEI--------GYDYLV 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE-RLEEKGIVQAINVET 255
++ G + + F TL+++ + + R FE EK + + T
Sbjct: 108 IAAGGSTNYFGMESMEKNGFGMKTLDESVMIRNHVL----RMFELAAHEKDADKRRALLT 163
Query: 256 TICPTGTPGNREAA--------------LKVLSARKVQLVL-----GYFVRCIR--RVGE 294
+ G P E+A L+ ++V+++L F + R
Sbjct: 164 FVIVGGGPTGVESAGALSELIYHVMVKEYHTLNFKEVRIMLVEASDKLFATMPKELRDAT 223
Query: 295 FEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 354
E +++ + D N +K ++KG ++ V+W G K
Sbjct: 224 VETLIRKHVEVRLCVQVTDYNGEKM------SLKG--GEVIPTYTVVWAAGVKA------ 269
Query: 355 PPNNRLHDLPLN--ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
N+ + L + + +A +E L + P +F +GDS+ RPLP A VA QQ
Sbjct: 270 --NSLIDTLKVEQASMRRAIVNEFLQLPNRPEVFVIGDSAQFMQGE-RPLPMVAPVAIQQ 326
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
A+ N+ + I + L F ++++G M +GRN A V G I +
Sbjct: 327 AEVTAKNIRSLIRGKELKKFTYRDVGNMATIGRNAAVVHMG---NFKTHGFIAWAIWSFV 383
Query: 473 YLIRLPTDEHRLKVGVSWL 491
+++RL +R V V W+
Sbjct: 384 HILRLIDFRNRAVVFVKWM 402
>gi|119513154|ref|ZP_01632204.1| hypothetical protein N9414_12238 [Nodularia spumigena CCY9414]
gi|119462204|gb|EAW43191.1| hypothetical protein N9414_12238 [Nodularia spumigena CCY9414]
Length = 421
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/380 (22%), Positives = 155/380 (40%), Gaps = 34/380 (8%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ PRI I+G GFGGL TA L + V L+D+ F P+LY++ + +++
Sbjct: 2 QTPRIVIVGAGFGGLQTAQSLA------NSGADVCLIDRHNYHTFVPLLYQVATSQLE-- 53
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
P + T ++ F + P ++ + YD+LVL
Sbjct: 54 ---PEYIAYPIRTIIRRFSGKRHQHKPKTRFLWAEVQRIDFKAQIVKTDRCAIAYDFLVL 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETT 256
+ G++ + V GA+E+AF TL +A ++ R L+ LE + E E ++ + T
Sbjct: 111 ATGSKTQYLGVTGASEYAFSLRTLAEAIKLRHRILACLELASQESDPE---IRQQLLTFT 167
Query: 257 ICPTGTPGNREAALKVLSARK-----------VQLVLGYFVRCIRRVGEFEASVKQPESG 305
I G G A + R QL L R + E +
Sbjct: 168 IVGGGATGVEIAGALIEMLRGKFRRDYPTLDLQQLRLIVIQSGDRLLAELPKKLGVYTYK 227
Query: 306 AIPNIAADKNSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 364
+ + + + ++ + ++ ++I V+WT G + P E P ++
Sbjct: 228 RLTQLGVEVYLQTRVSQVTKESVHLQNNEIIPTATVIWTAGLEANSP--ETPE----EIS 281
Query: 365 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 424
+G+ TL + P ++A+GD + + + +G+PL A VA QQ N+ +
Sbjct: 282 TAKKGKLSVHPTLQLLEQPNVYAIGDLAYI-EQNGKPLAGVAPVALQQGVTVARNIQQQL 340
Query: 425 NDRPLLPFRFQNLGEMMILG 444
+ PF + N G + I+G
Sbjct: 341 RGKSPKPFSYFNKGRLAIIG 360
>gi|427722309|ref|YP_007069586.1| NADH dehydrogenase (ubiquinone) [Leptolyngbya sp. PCC 7376]
gi|427354029|gb|AFY36752.1| NADH dehydrogenase (ubiquinone) [Leptolyngbya sp. PCC 7376]
Length = 459
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 102/432 (23%), Positives = 182/432 (42%), Gaps = 42/432 (9%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P K ++ I+GGGFGGLY A L + V L+D+ +F+P+LY++ +G +
Sbjct: 11 PKTDKHKVVIIGGGFGGLYAAKTLGK-----NGAVDVTLIDKRNFHLFQPLLYQVATGTL 65
Query: 135 DAWEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+IA +L+ N D+V+ + P TV++ G V+YD
Sbjct: 66 SPADIASPLRGILSRNENTHVLLDQVQDVDPETK-------------TVVMTEG-TVQYD 111
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAIN 252
LV++ G +A T+EDA + R + E E+ + + QA
Sbjct: 112 SLVVATGVSHHYFGNDQWKPYAPGLKTVEDALEIRHRIFAAFEAA--EKETDPALQQAWL 169
Query: 253 VETTIC--PTGTP---GNREAALKVLSA--RKVQLVLGYFV---RCIRRVGEFEASVKQP 302
I PTG E A VL RK+ + R + ++ S+
Sbjct: 170 TFVIIGGGPTGVELAGAISEIAYSVLKKDFRKIDTAKAKVILLEGMDRVLPPYDPSLSAK 229
Query: 303 ESGAIPNIAADKNSDKYILELQP---AIKGLESQI-FEADLVLWTVGSKPLLPHVEPPNN 358
++ ++ D + + ++ +K E Q+ A ++W G K + +
Sbjct: 230 AQQSLESLGVDVQTSSLVTNIEGDRVTVKQGEEQLELHAKTIVWAAGVKAS-GMGKVLGD 288
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
RL D L+ G+ + L V+G+P +F +GD + + RPLP A VA Q+ +
Sbjct: 289 RL-DANLDRAGRVIVEPNLSVEGYPDVFVIGDLANFPHQNERPLPGVAPVAMQEGQYVAK 347
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
+ I + PFR+ +G + ++G+N A V +V+ G + A++ L
Sbjct: 348 LIKQRIQGNEMAPFRYTEVGSLAVIGQNAAVVDLGYVK---FSGFLAWLVWIFAHVYYLI 404
Query: 479 TDEHRLKVGVSW 490
++++ V + W
Sbjct: 405 EFDNKMVVMIQW 416
>gi|307152048|ref|YP_003887432.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
gi|306982276|gb|ADN14157.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Cyanothece sp. PCC 7822]
Length = 451
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 107/438 (24%), Positives = 179/438 (40%), Gaps = 60/438 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KPR+ I+GGGFGGLYTA L+ D QV L+D+ +F+P+LY++ +G +
Sbjct: 7 RKPRVVIVGGGFGGLYTAKALK------DAPVQVTLIDKRNFHLFQPLLYQVATGSISPA 60
Query: 138 EI-APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I +P L + +Q D V L P + V+L+ +EYD L+
Sbjct: 61 DISSPLRLVLRHHKNIQVLLDEVIDLDPENK-------------QVILKGHEPIEYDILI 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
++ G FA T+EDA + R++ + E+ + I QA T
Sbjct: 108 VATGVSHFYFGNDHWKTFAPGLKTIEDALEIRRRIF-MAFEAAEKESDPEIRQAW--LTF 164
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF---------------EASVKQ 301
+ G P E A + L G F + + E S K
Sbjct: 165 VIVGGGPTGVELAGAIAEIAHSSLT-GDFRQIDTGAAKILLLEGMDRLLPPYPPELSAKA 223
Query: 302 PESGAIPNIAADKNSDKYILELQPAI----KGLESQIFEADLVLWTVGSKP-----LLPH 352
ES + + + ++ + +G + + +A +LW G K +L H
Sbjct: 224 EES--LTRFGVTIQTKTMVTDVSEGMVTIRQGEQVKNIQAKTILWAAGVKASSMGEVLAH 281
Query: 353 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
L+ G+ + L + HP IF +GD + +PLP A VA QQ
Sbjct: 282 RTGAK-------LDRAGRVIVEPDLSIAQHPNIFVIGDLANFPHQDDKPLPGVAPVAMQQ 334
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
++ L + +LPF + + G + ++G + A V+ FV+ L G + A
Sbjct: 335 GEYMAQLLKKRLKGEAVLPFYYVDHGSLAVIGHHSAVVNLGFVK---LHGLLAWFIWLWA 391
Query: 473 YLIRLPTDEHRLKVGVSW 490
++ L +++L V V W
Sbjct: 392 HIYYLIEFDNKLVVMVQW 409
>gi|302538034|ref|ZP_07290376.1| oxidoreductase [Streptomyces sp. C]
gi|302446929|gb|EFL18745.1| oxidoreductase [Streptomyces sp. C]
Length = 401
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 154/385 (40%), Gaps = 45/385 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSG-EVDAW 137
K RI +LG G+ G Y A L + D ++ +V+ FV + L++L +G EV+A
Sbjct: 2 KHRIVVLGAGYAGAYVAGTLARRLAPADA--EITVVNAEPDFVQRMRLHQLAAGQEVEA- 58
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
PR AD+ A T V+ RV L P + +A G + G + YD L+
Sbjct: 59 ---PRLADVFAGTEVRLRVARVTALDPERRV-----VALADAGA---DGGGELGYDTLLY 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+LG+ VPG A+ AF + A R+ +L LE R+ +ET
Sbjct: 108 ALGSRGADHGVPGVADHAFDIAARPSALRLRERLDGLEGRDGGGGVLVVGDGLTGIET-- 165
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS- 316
A ++ +R G V + R GE A++ G + A
Sbjct: 166 -----------ATEIAESRP-----GLSVTLVAR-GELGAALSAGARGHLRQACARLGVT 208
Query: 317 --DKYILELQPAIKGL--ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAE 372
+ +E A + L + + +D +WT G P L + G+
Sbjct: 209 VLEHTTVEAVEATRVLCADGTVLASDATVWTAG------FTVGPLAAASGLEVTDDGRIA 262
Query: 373 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPF 432
D T+ HP ++A+GDS+ +GRPLP + A A + + R +
Sbjct: 263 VDRTMRSVSHPDVYAVGDSAYAVGDNGRPLPMSCGSAGYTGRQAVEAVVGRLTGREVPNA 322
Query: 433 RFQNLGEMMILGRNDAAVSPSFVEG 457
+ + LG + LGR D + EG
Sbjct: 323 KLEYLGNHISLGRLDGILQMVDAEG 347
>gi|297545455|ref|YP_003677757.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296843230|gb|ADH61746.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 596
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/416 (21%), Positives = 172/416 (41%), Gaps = 65/416 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G G+GG++ A +L +++D +++L+D+ L+E+ ++ +
Sbjct: 6 RIVIVGAGYGGVHAA-KLLHKKFKNDSNIEIILIDKKPYHTLLTDLHEVAGSRIEPDSVR 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDH--LGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ AN V+ D V+ + + +G +G YD+L+L
Sbjct: 65 VYLHKIFANKKVKVIIDEVEKIDYETNRVIGKDGEY----------------HYDYLILG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR-NFERLEEKGIVQAINVETTI 257
+G+EP VPG E+ F TLE A + + E+ R+ + E EK + + +
Sbjct: 109 IGSEPCDFGVPGVFEYGFTVGTLEAAIKTKEHIEEMFRKASVESNPEK---KRKMLTFVV 165
Query: 258 CPTGTPGNREAALKVLSARKV--QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD-- 313
G G A + A+ + + L Y + + V + + +PN+ A
Sbjct: 166 AGAGFTGIETAGELMEWAKSLCDKYHLDY--------KDVKIMVVEALNTILPNLNAKLA 217
Query: 314 KNSDKY-------ILELQPAIKGLESQI-------FEADLVLWTVGSKPLLPHVEPPNNR 359
K + ++ +L P ++ + I E ++WT G + N+
Sbjct: 218 KKATRFLAKKGVEVLTNAPIVEVAKDYIVLKDGRKIETKTLIWTCGVQ---------GNK 268
Query: 360 LHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
+ L L R + +T+E + I+ +GD A + G+P+P + A Q A+
Sbjct: 269 CAENFGLELGRRSRIQTNEYMQAVNKENIYVIGD-LAYYEIDGKPIPQVVETALQSAETV 327
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
+N+ A I PF+ + G M+ +G A + GV+L G + + + L
Sbjct: 328 VYNIVADIKGGEKQPFKPKYHGFMVSIGSRYAVAE---IMGVSLTGFLAMAMKHLV 380
>gi|291335271|gb|ADD94890.1| putative type 2 NADH dehydrogenase [uncultured marine bacterium
MedDCM-OCT-S09-C166]
Length = 504
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 101/439 (23%), Positives = 177/439 (40%), Gaps = 59/439 (13%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ P + I+GGGF G++ ++L D + + L+D+ +F+P+LY++ +G V
Sbjct: 18 RHAPHVVIVGGGFAGVHAC---KALAKADVR---ITLIDKRNFNLFQPLLYQVATGLVSR 71
Query: 137 WEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++A +L+ VQ V + P G ++ +G YD L
Sbjct: 72 SDVATPLRELVGKQKNVQVLLGEVTTVNPE--------------GKQIVFNGKAYSYDHL 117
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
VL+ G+ FA P LE A + R+L E+ E+ +A
Sbjct: 118 VLATGSGSTYFGHEDWRTFAPPMKILEHAEEIRRRL----LMAMEQAEQTPNPEARQFLQ 173
Query: 256 TICPTGT-PGNREAA--------------LKVLSARKVQLVL---GYFVRCIRRVGEFEA 297
T+ G P E A K L +K ++VL G V EA
Sbjct: 174 TVVIVGAGPSGCEMAGAVSELMRWALNNAFKQLDPQKTRIVLVDPGDRVLRAMPAELSEA 233
Query: 298 SVKQPESGAIPNIAADKNSDKYILELQPA---IKGLESQI-FEADLVLWTVGSKPLLPHV 353
++K E I + + + ++P I G + +A V+WT G K H+
Sbjct: 234 ALKGLERDGIEYMRQGR-----VQTMRPGEVVIGGPTGDVRVQAATVIWTAGVKA--SHL 286
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQ 412
+ ++ G+ + + HP I GD + + +G+PLP A A Q
Sbjct: 287 GQKLTKATGCEVDRGGRVIVNSDFSIPNHPEIRIAGDLCSYSHTVNGKPLPGMAAPAKQA 346
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
F G ++ A + R FR+ + G M ++ + +AV+ + G + G +G +
Sbjct: 347 GTFIGKDIAAIVARRSRPTFRYFDFGSMAVV--HASAVAD--LHGFKVSGRLGLLLWAIV 402
Query: 473 YLIRLPTDEHRLKVGVSWL 491
+L +P E R+ + + WL
Sbjct: 403 HLALIPNQETRITLSIKWL 421
>gi|403069389|ref|ZP_10910721.1| NADH dehydrogenase [Oceanobacillus sp. Ndiop]
Length = 406
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 158/386 (40%), Gaps = 47/386 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP+I +LG G+ GL T RL + ++ +++L+++ L+E+ +G ++ +
Sbjct: 7 KPKIVVLGAGYAGLVTTRRLSQKLSPEE--AEIVLINKHNYHYESTWLHEVAAGTINPNQ 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
D + V+ D V + + V+LE+ V YD+LV++
Sbjct: 65 ARFMLTDAVNPKKVRLIYDSVLEVKRDEQ-------------RVVLENSE-VTYDYLVIA 110
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
LG +PG E AF + +E + R ++E F + N+ +
Sbjct: 111 LGFVSNTFGIPGMDEHAFSITDIESS----RLIAEHIEYQFAKYATDENPSDDNLTILVG 166
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFV-RCIRRVGEFEA--SVKQPESGAIPNIAADKN 315
G G + L+ + QL Y + R R+ EA S+ + A
Sbjct: 167 GGGFTGIE--FVGELAEKVPQLCKKYDIDRSKARIINVEAAPSILPVFDEDLVTYAKKSL 224
Query: 316 SDKYI-LELQPAIK---------GLESQIFEADLVLWTVG--SKPLLPHVEPPNNRLHDL 363
D+ + + IK G + ++ +A V+WT G P+L
Sbjct: 225 EDRGVEFRIGAPIKECTADGFIVGDDKELIKAGTVVWTGGVTGNPVLAK--------SGF 276
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGWNLWA 422
L +G+ D L V G IF LGD S + D SGRP P T Q+A Q+ A N+ A
Sbjct: 277 EL-VKGKVNVDADLRVPGEENIFILGDCSWVMDKESGRPYPPTGQLATQEGAVAADNIAA 335
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDA 448
I ++P+ F F N G + LG D
Sbjct: 336 LIRNQPVQDFVFHNKGTVASLGITDG 361
>gi|452958485|gb|EME63838.1| NADH dehydrogenase [Amycolatopsis decaplanina DSM 44594]
Length = 442
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 105/399 (26%), Positives = 160/399 (40%), Gaps = 64/399 (16%)
Query: 77 KKKP-RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
K +P RI +LGGG+ GLYTA L+ ++ ++ V +VD + P L E +G ++
Sbjct: 5 KSEPTRILVLGGGYVGLYTAYGLQKMLRANEA--SVTVVDPQPHMTYAPFLPEAAAGAIE 62
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ +L V RV + + V A H +E + YD L
Sbjct: 63 PRHVVVPLRRVLKRCHV--LTARVTKI-EHERKAVTVEAADGH-----VEQ---LNYDVL 111
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDA--------CRVDRKLSELERRNFERLEEKGI 247
V++LGA ++ +PG E F T+ +A ++D S L+ +RL
Sbjct: 112 VVALGAVARILPIPGLVEEGIAFKTIGEAIYLRNHVMTKLDEAASTLDPEQRKRL----- 166
Query: 248 VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF----VRCIRRVGEFEASVKQPE 303
+ T+ G G AL L V Y+ V IR V A PE
Sbjct: 167 -----LTFTVVGGGFAGIE--ALAELEDMTRFAVENYYPNLKVEDIRWVLVEAAGRILPE 219
Query: 304 SGAIPNIAADKNSDKYILE--LQPAIKGLES--------QIFEADLVLWTVGSK--PLLP 351
+ + +K +E L A K E+ F+ D ++WT G K P+L
Sbjct: 220 VRETLGVYTVEQLEKRGIEVYLSTAAKSFENGHVVLSDGTEFDTDTIIWTAGVKANPVLA 279
Query: 352 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS------GRPLPAT 405
DLPL+ RG+ E + V GHP ++ GD++A+ D S P
Sbjct: 280 S--------SDLPLDKRGRVEATAAMQVVGHPDVWTAGDNAAVPDLSRTEQDPTATCPPN 331
Query: 406 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
AQ A +QA N+ I + +NLG + LG
Sbjct: 332 AQHAVRQARLLAKNIIKVIRGGKPKDYYHKNLGAVASLG 370
>gi|338529980|ref|YP_004663314.1| putative NADH dehydrogenase [Myxococcus fulvus HW-1]
gi|337256076|gb|AEI62236.1| putative NADH dehydrogenase [Myxococcus fulvus HW-1]
Length = 424
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 143/354 (40%), Gaps = 47/354 (13%)
Query: 113 LVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNG 172
+VD+ +F+P+LY++ + + EIA LL V V GV+
Sbjct: 1 MVDRHNHHLFQPLLYQVATATLSPSEIAAPLRALLGRHDVSVVLAEVT--------GVD- 51
Query: 173 PMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL- 231
T G VLL G + +YD+LV++ GA A+ A ++EDA + R++
Sbjct: 52 ----TVGKRVLLSDGEL-KYDFLVIATGATHSYFGNDAWAQHAPGLKSIEDAVEIRRRIL 106
Query: 232 --SELERRNFERLEEKGIVQAINVETTICPTGT--------------PGNREAALKVLSA 275
EL R + + ++ I + PTG PG+ + +
Sbjct: 107 VAFELAEREPDPEVRRALLNFIIIGA--GPTGVELAGSLAEISRHSLPGD----FRNIDP 160
Query: 276 RKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 334
R+ +++L + I RV + + Q + + + + + + + ++
Sbjct: 161 REARIIL---IEGIDRVLPVYPDDLSQKACRTLEKLGVEVRTGARVTHINEQGIFIGTEF 217
Query: 335 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 394
A VLW G P R L+ G+ L V GH +F +GD ++L
Sbjct: 218 IPARTVLWAAGV------AASPVARSLGAQLDRAGRVLVTPELTVPGHDDVFVVGDLASL 271
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
D+ G+P+P A A Q+ A N+ + +P+ F + + G ++GR A
Sbjct: 272 NDADGKPVPGLAPAAMQEGKHAAHNIRRQLQGKPMEAFSYWDRGSYAVIGRGHA 325
>gi|149197833|ref|ZP_01874882.1| NADH dehydrogenase [Lentisphaera araneosa HTCC2155]
gi|149139054|gb|EDM27458.1| NADH dehydrogenase [Lentisphaera araneosa HTCC2155]
Length = 420
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/429 (21%), Positives = 165/429 (38%), Gaps = 56/429 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ I+GGGF G+ A L + + V L+D+ +F+P+LY++ + +IA
Sbjct: 3 KVVIIGGGFAGINAARNL-----GNKEGFDVTLIDRRNHHLFQPLLYQVAMAGLSPADIA 57
Query: 141 PRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+L ++ D K + P D + C G ++D L+++
Sbjct: 58 APIRTILKKYKNIKVVMDYAKKIDPEDK-----KVICKAGE---------YDFDLLIMAC 103
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLE--EKGIVQAINVETTI 257
GA ++A T+ A + R++ FE+ E E + + ++ I
Sbjct: 104 GARHSYFGHNEWEKYAPGLKTINQATEIRRRVF----MAFEKAEKTENDLEMSKHLTFVI 159
Query: 258 C---PTG-------------TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQ 301
PTG T G+ + L V R + + G R + F+ Q
Sbjct: 160 VGAGPTGVELAGAIGEMNRYTLGDEFSQLDVSKTRVLLIEAG-----PRILAAFDEDQSQ 214
Query: 302 PESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
+ + D + + + L + + VLW G + P
Sbjct: 215 RAQSDLVKLGVDVRLGQAVTHIDDQCVKLGDETIQTSTVLWAAGVEASRLGKSLP----- 269
Query: 362 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW 421
+ L+ G+ +E L +K P IF GD + GRPLP A VA QQ + L
Sbjct: 270 -VELDRAGRVPIEEDLSMKQFPYIFVAGDQANFTGKDGRPLPGMAPVAMQQGRYLAKLLV 328
Query: 422 AAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDE 481
A + + F++ + G+M +GR+ A + L+G I A +++ L +
Sbjct: 329 AREKGKDIGGFKYVDKGKMATIGRSSAIAQAG---KIKLEGFIAWLAWLFIHILYLSGFK 385
Query: 482 HRLKVGVSW 490
+R V V W
Sbjct: 386 NRFFVFVQW 394
>gi|441496041|ref|ZP_20978276.1| NADH dehydrogenase [Fulvivirga imtechensis AK7]
gi|441440000|gb|ELR73283.1| NADH dehydrogenase [Fulvivirga imtechensis AK7]
Length = 441
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 171/398 (42%), Gaps = 65/398 (16%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++PR+ IL GG + +L QD QV+L+D+ F+P+LY++ + ++A
Sbjct: 30 ERPRLVIL---GGGFGGLHLIRALRKQD---FQVVLIDKQNHHTFQPLLYQVATSGLEAD 83
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
IA P L A+ F V + P +L T+GGT + YD+LV
Sbjct: 84 SIAYPLRKPLNAHPDCHFRMVEVTEVVPEKNL------VVTNGGT--------LRYDYLV 129
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERL------EEKGIVQA 250
++ GA + A P ++ DA + +L RN+E E+K Q
Sbjct: 130 IATGARTNYFGMKDIERHALPMKSISDAIGIRNRLL----RNYEEALLINDPEQKD--QL 183
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR--RVGEFEASVKQPESGAIP 308
+NV + G P E A + +K + Y ++ ++ E + PE
Sbjct: 184 MNV---VIAGGGPTGVELAGAIAEFKKYIMPHDYPDLDVKSAKIHLIELT---PELLPAM 237
Query: 309 NIAADKNSDKYILELQPAIK------GLESQIFEAD-------LVLWTVG-SKPLLPHVE 354
+ A + +++Y+ +L IK G + ++ D ++LWT G S +LP
Sbjct: 238 SDEASQKAEEYLRQLSVIIKTNTKIEGYDGRVVRTDAGNIPARVMLWTGGVSGAILP--- 294
Query: 355 PPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL--PATAQVAFQQ 412
L + +G+ + + + VKG+ +FA+GD + + ++ P P A VA QQ
Sbjct: 295 ----GLGKGLVTKKGRIKANASGRVKGYDNVFAIGDVAQI-ETKNYPQGHPQLASVAVQQ 349
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
F NL I + L F + N G M +GR A V
Sbjct: 350 GKFLATNLTRHIKGKELKEFHYINKGTMATVGRKKAVV 387
>gi|424871453|ref|ZP_18295115.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. viciae WSM1455]
gi|393167154|gb|EJC67201.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. viciae WSM1455]
Length = 421
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 100/413 (24%), Positives = 167/413 (40%), Gaps = 73/413 (17%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
++ LVD+ +F+P+LY+ +LS AW I +AD + V +L
Sbjct: 28 RITLVDRRNHHLFQPLLYQVATTILSTSEIAWPIRRLYAD----------RPDVTVLL-G 76
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEFA 215
D GV+ + TV L +G+ + YD LVL+ GA EP V PG
Sbjct: 77 DVTGVD-----SGAKTVSLRNGMTLGYDTLVLATGATHAYFGHDEWEP---VAPG----- 123
Query: 216 FPFSTLEDACRVDRKLSELERRNFER--LEEKGIVQAINVETTICPTGTPGNREAAL--- 270
TLEDA + R+L FE+ +E V+ + TI G G A +
Sbjct: 124 --LKTLEDATTIRRRL----LLAFEKAEMEPDPAVRDALLTFTIVGAGPTGVELAGIIAE 177
Query: 271 ----------KVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIPNIAADKNSDKY 319
+ + RK ++VL V RV F + A+ + + + K
Sbjct: 178 LAHFTLPKEFRNIDTRKTRVVL---VEAGPRVLPTFAEELSAYAQKALEKLGVEIHLGKP 234
Query: 320 ILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCV 379
+ E + + ++W G P R D+ + G+ ++ L
Sbjct: 235 VTECNADGVKIGETFVASRTIVWAAGV------TASPAARWLDVASDRAGRVVVEKDLSA 288
Query: 380 KGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLG 438
G P +F +GD++++ G+P+P A A QQ + + A I+ +P PFR+ + G
Sbjct: 289 PGLPNVFVVGDTASVMREDGKPVPGIAPAAKQQGGYVAKVIRARISGKPAPAPFRYWHQG 348
Query: 439 EMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+ +G++ A + ++ L G + LA++ L R V SWL
Sbjct: 349 SLATIGKSAAIIDFGRIK---LKGWLAWWIWGLAHIYFLIGTRSRFSVAWSWL 398
>gi|309792243|ref|ZP_07686715.1| AD-dependent pyridine nucleotide-disulfide oxidoreductase
[Oscillochloris trichoides DG-6]
gi|308225784|gb|EFO79540.1| AD-dependent pyridine nucleotide-disulfide oxidoreductase
[Oscillochloris trichoides DG6]
Length = 452
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 108/442 (24%), Positives = 182/442 (41%), Gaps = 68/442 (15%)
Query: 74 WPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGE 133
WP +PR+ I+G GFGG+ A L +K VL++D++ F P+LY++ +
Sbjct: 27 WP-SARPRVVIIGAGFGGINAARALA------NKDVDVLMIDRNNYHGFWPLLYQVATAG 79
Query: 134 VDAWEIA-PRFADLLANTGVQFFKDRV-KLLCPSDHLGVNGPMACTHGGTVLLESGLIVE 191
++ +A P A + + V F V ++ C + ++ + +
Sbjct: 80 LEPESVAYPVRAIIRRFSNVSFMMAEVTRIDCAAK---------------MVYTPTIALP 124
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQA 250
YD+L+++ G+ AE + L+DA R+ + LS E E ++ I Q
Sbjct: 125 YDYLIIAAGSANNYFGNDSLAEHTYGLKDLDDAERLRNHVLSNFEYAVSE--QDPAIRQ- 181
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES-----G 305
+ T + G P E L+ ++LV VR + EA V E+
Sbjct: 182 -RLMTLVIVGGGPTGVE-----LAGAFIELVRHVLVRDYPMLDISEARVVLVEASEHILA 235
Query: 306 AIPN---IAADKNSDKYILE--LQPAIKGLESQ--------IFEADLVLWTVGSKPLLPH 352
P + + +K +E L+ + +++Q E V+W G +
Sbjct: 236 VFPEGLRRSGLRRLEKMGVEVRLKTMVANVDAQGVTFGDGSRLETGSVIWAAGVR----- 290
Query: 353 VEPPNNRLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS-GRPLPATAQV 408
L D + L G+ TL + +P +F +GD + L G P P A V
Sbjct: 291 ----GAHLGDSLGMKLARGGRVPVQPTLNLATNPDVFVIGDMAYLDTYKPGVPYPMIAPV 346
Query: 409 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA 468
A Q A+ A N+ A RPL F + + G M +GR AV +F GV L G +
Sbjct: 347 AVQMAELAAHNILAKTRRRPLRSFHYFDKGNMATIGRR-GAVMDAF--GVRLSGFLAWMG 403
Query: 469 RKLAYLIRLPTDEHRLKVGVSW 490
L +L+ L +R+ V ++W
Sbjct: 404 WLLVHLMFLVGFRNRVIVLLNW 425
>gi|222086349|ref|YP_002544883.1| NADH dehydrogenase [Agrobacterium radiobacter K84]
gi|221723797|gb|ACM26953.1| NADH dehydrogenase protein [Agrobacterium radiobacter K84]
Length = 405
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 105/423 (24%), Positives = 172/423 (40%), Gaps = 93/423 (21%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCP- 164
++ L+D+ +F+P+LY+ LL+ AW I FF+DR ++
Sbjct: 13 RITLIDRRNHHLFQPLLYQVATTLLATSEIAWPIR------------NFFRDRPEVTTLL 60
Query: 165 SDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEF 214
++ GV+ + TV L++G + YD LVL+ GA EP V PG
Sbjct: 61 AEVAGVD-----SQAHTVTLKNGDTIGYDTLVLATGATHAYFGHDEWEP---VAPG---- 108
Query: 215 AFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVL 273
TLEDA + R+ L E+ E+ + I A+ + TI G G A +
Sbjct: 109 ---LKTLEDATTIRRRVLLAFEQAELEK--DPAIRDAL-LTFTIVGAGPTGVELAGIIAE 162
Query: 274 SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLES 332
ARK + R + +A + E+G P + A ++ EL A K LE
Sbjct: 163 LARKT------LPKEFRNIDTSKARIILVEAG--PRVLAS-----FVEELSDYAQKALEK 209
Query: 333 QIFEADL-----------------------VLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
E L ++W G + P + D+P + G
Sbjct: 210 LGVEIHLGKPVTSCTAEGVTIGDTFVPCRTIVWAAGVQ------ASPAAKWLDVPADRAG 263
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
+ D+ L G P IF +GD++A+ G P+P A A QQ + + A + +P
Sbjct: 264 RVVVDKELHAPGQPDIFVIGDTAAVTREDGSPVPGIAPAAKQQGAYVAKVIRAKLAGQPA 323
Query: 430 L-PFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGV 488
PF +++ G + +G++ A + ++ L G + LA++ L R+ V
Sbjct: 324 PGPFHYRHQGSLATIGKSAAIIDFGRIK---LKGWLAWWVWGLAHIYFLIGTRWRIAVAW 380
Query: 489 SWL 491
SWL
Sbjct: 381 SWL 383
>gi|419713047|ref|ZP_14240476.1| putative oxidoreductase [Mycobacterium abscessus M94]
gi|382947100|gb|EIC71381.1| putative oxidoreductase [Mycobacterium abscessus M94]
Length = 391
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 95/401 (23%), Positives = 160/401 (39%), Gaps = 71/401 (17%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGE-VDA 136
+ P + +LGGG+ G A RL Q + + LV+ E FV + L++ +G +
Sbjct: 4 QHPHVVVLGGGYAGTMAANRL-----QQNTNIDITLVNPREEFVHRLRLHQFAAGTGIAT 58
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
E AP RV+L+ S + ++ P + LESG +++YD+L+
Sbjct: 59 AEYAP------------MLGKRVRLVVDS-AVRIDAPARM-----IRLESGDVLDYDYLI 100
Query: 197 LSLGAEPKLDV-VPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
++G+ +PG +EFA+P S E A R+ LE G +V+
Sbjct: 101 YAIGSTDSTAAGIPGLSEFAYPLSEFESAQRLRVA-----------LETSG----PDVQI 145
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKN 315
T+ G G A+ R V+LV G G+ + P I A +
Sbjct: 146 TVVGAGLTGIEMASELADLGRNVRLVCG---------GQLAPTFGAPARRTIAQWFARRR 196
Query: 316 SD----KYILELQP-AIKGLESQIFEADLVLWT--VGSKPLLPHVEPPNNRLHDLPLNAR 368
D + E++P ++ + + + +W G L H L ++A
Sbjct: 197 VDVLENTSVTEVRPDSVVLADGTALSSAITVWAGGFGVPALAAH--------SGLSVDAD 248
Query: 369 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428
G+ TD+TL RI GD+ ++ P + A A + + D
Sbjct: 249 GRLLTDDTLTSMDDGRIVGAGDAVT---TTSLPTRMSCYTANTTGAAAADTVLNHLADTE 305
Query: 429 LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
PFR +G+ + LGR +A + + + D P+G AR
Sbjct: 306 PAPFRLAYVGQCLSLGRGNAVLQFTRKD----DSPVGAHAR 342
>gi|337752039|ref|YP_004646201.1| hypothetical protein KNP414_07845 [Paenibacillus mucilaginosus
KNP414]
gi|379724950|ref|YP_005317081.1| hypothetical protein PM3016_7364 [Paenibacillus mucilaginosus 3016]
gi|386727705|ref|YP_006194031.1| hypothetical protein B2K_37165 [Paenibacillus mucilaginosus K02]
gi|336303228|gb|AEI46331.1| YjlD [Paenibacillus mucilaginosus KNP414]
gi|378573622|gb|AFC33932.1| YjlD [Paenibacillus mucilaginosus 3016]
gi|384094830|gb|AFH66266.1| hypothetical protein B2K_37165 [Paenibacillus mucilaginosus K02]
Length = 392
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 19/275 (6%)
Query: 182 VLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFER 241
VLL SG + YD LV++LG+E +PG E +F +++DA +R + +E R
Sbjct: 90 VLLGSGKTLSYDILVIALGSETAYFGIPGLQEHSFTLKSVQDA---NRVRAHVEARIDAY 146
Query: 242 LEEKGIVQAINVETTICPTGTP--GNREAALKVLSARKVQLVLGYFVRCIRR----VGEF 295
++ K A V TG G L L +K + C+ + F
Sbjct: 147 VQSKDKADATFVVGGGGLTGIELVGEFADMLPGLCRKKGVDFNDISIYCVEAGPSILAGF 206
Query: 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGL-ESQIFEADLVLWTVGSKPLLPHVE 354
+ + ++ + I E+ L + + + ++WT G +
Sbjct: 207 APELVERAQTSLAKRGVQFLTGVAITEMTATTVHLKDGSTIDTNTLVWTGGVQG------ 260
Query: 355 PPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 413
N+ + + + RG+A E L HP +F GDS+ + GRP P TAQ+A+Q
Sbjct: 261 --NSVVANCGIEVNRGRATVTEGLQSTSHPDVFLAGDSAVVFGPEGRPYPPTAQLAWQMG 318
Query: 414 DFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ G+N++A +N P+ PF G + LGR D
Sbjct: 319 ETIGYNIFAYLNGAPMDPFTPVFSGTLASLGRKDG 353
>gi|298244179|ref|ZP_06967985.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Ktedonobacter racemifer DSM 44963]
gi|297551660|gb|EFH85525.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Ktedonobacter racemifer DSM 44963]
Length = 441
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 159/379 (41%), Gaps = 39/379 (10%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PR+ I+G GFGGL A L D QV ++D++ +F+P+LY++ + + +I
Sbjct: 17 PRVVIVGAGFGGLRVARSLR------DAPAQVTVIDKNNHHLFQPLLYQVATAGLSPADI 70
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ +L + ++ LL + GV+ ++L + + YD+L+L+
Sbjct: 71 SAPIRSILKSQ-----QNTTVLLA--EVTGVDTER------QLVLTAEREIPYDYLILAT 117
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTIC 258
GA ++FA T+ DA + R+ L E E ++ V
Sbjct: 118 GAAHSYFGHDEWSDFAPGLKTITDATHIRRQVLLAFEAAEMEPDPDRQQELMTFVLVGAG 177
Query: 259 PTGTPGN---REAALKVLSARKVQLVLGYFVRCI------RRVGEFEASVKQPESGAIPN 309
PTG + E A K L AR + + R I R + F + Q A+ +
Sbjct: 178 PTGVEMSGAIAELAHKAL-ARDFRHIDPRSARVILVEAMPRILPAFPEKLAQKARKALNH 236
Query: 310 IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
+ + ++ + + + Q A V+WT G P + ++ G
Sbjct: 237 LGVEVRTNSPVENIDREGVVVAGQRIPARNVIWTAGV------AASPAGKWLQAEVDRAG 290
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
+ + L V G P +F +GD+S+L +G+PLP A VA QQ ++ G + +
Sbjct: 291 RVKVQPDLSVPGLPNVFVIGDTSSLMQ-NGKPLPGVAPVAMQQGNYIGSLIVQKVKGSQA 349
Query: 430 L--PFRFQNLGEMMILGRN 446
F++ N G + +GR+
Sbjct: 350 SEPAFQYTNKGNLATVGRS 368
>gi|435854676|ref|YP_007315995.1| NADH dehydrogenase, FAD-containing subunit [Halobacteroides
halobius DSM 5150]
gi|433671087|gb|AGB41902.1| NADH dehydrogenase, FAD-containing subunit [Halobacteroides
halobius DSM 5150]
Length = 586
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/421 (22%), Positives = 169/421 (40%), Gaps = 61/421 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I ILG G+ G+ A L +DD + L+DQ++ L+E+ + +
Sbjct: 3 KIAILGAGYAGIKAAKTLNKKFKRDDT-VDITLIDQNQHHTLLTELHEVAGNRIGPDGVK 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
AD+ A T V +D++ + ++ L+ + +YD+LVL +G
Sbjct: 62 ISLADVFAQTKVNLVQDKITNVETNNQ--------------KLISNTSEYDYDYLVLGVG 107
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKL----------SELERRNFERLEEKGIVQA 250
+EP +PG E AF +L+DA +++ + ++L++R+ G
Sbjct: 108 SEPTYFNIPGMEENAFTLWSLDDAQQINSHIHNMFRLAANETDLDKRDEMLTFVVGGGGF 167
Query: 251 INVETT---------ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQ 301
+ET +C +E ++KV+ A L V RR+ + + + +
Sbjct: 168 TGIETVGEIAEWSEELCERYDILPQEVSIKVVEAMDSILP----VLSERRINKAKKYLTE 223
Query: 302 PESGAIPNIAADKNSDKYILELQP---AIKGLESQIFEADLVLWT--VGSKPLLPHVEPP 356
+ + +D I E++ I + +I LV WT V +K L+ +
Sbjct: 224 K-------LGVEVLTDTRICEVKENSVIINDCDEEIRTQTLV-WTGGVKTKSLVKKLGLE 275
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
NR + +N Q D IFA+GD++ LP + A Q
Sbjct: 276 LNRRDRIEVNKYLQTSID---------NIFAIGDNAYFETEDEWVLPQLVEAAVQAGKCV 326
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
N+ A I + F Q G M+ +G N A + + G+T+ +G A +LI
Sbjct: 327 AQNIHAQITGSKMKEFDPQLHGVMVSIGSNYAVAELNPISGITIP-LVGFLAMMTKHLIN 385
Query: 477 L 477
+
Sbjct: 386 M 386
>gi|456384821|gb|EMF50399.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces bottropensis ATCC 25435]
Length = 403
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 151/375 (40%), Gaps = 56/375 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
K + ++GGG+ G+ A RL +DD V L++ FV + L++L+ G DA
Sbjct: 3 KNTAVVVIGGGYAGVMAANRL---TRRDDVT--VTLINPRPDFVNRVRLHQLVGGSDDA- 56
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ ++LA GV+ D V + ++ V L SG V+YD+LV
Sbjct: 57 --VVDYREVLAE-GVRLVVDTVTRIETAER-------------GVTLASGATVDYDYLVY 100
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
++G+ VPGAAEFA+P ++LE+A R+ L QA V +
Sbjct: 101 AVGSGSADPGVPGAAEFAYPIASLEEARRLRPVLDA-------------TAQAAPV--AV 145
Query: 258 CPTGTPGNREAALKVLSARKVQL----VLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 313
G G AA R V L VLG ++ A+ D
Sbjct: 146 VGAGPTGIETAAELAEQGRPVTLLCGGVLGPYLH------RRGRRAVARRLTALGVTVLD 199
Query: 314 KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAET 373
K A++ + + + + +WT G +P + + L +A G+ T
Sbjct: 200 GPGTKVTAVTDTAVRLGDGREVPSAVTVWTAGFG--VPDLAARSG----LSTDALGRLLT 253
Query: 374 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 433
DETL PRI A GDS+A SG PL + Q A A + A I P
Sbjct: 254 DETLTSVDDPRIVAAGDSAA---PSGLPLRMSCQAAIPLGARAADTVLARIEGERPAPLN 310
Query: 434 FQNLGEMMILGRNDA 448
G+ + LGR +
Sbjct: 311 QLFAGQCISLGRGEG 325
>gi|451335587|ref|ZP_21906154.1| NADH dehydrogenase [Amycolatopsis azurea DSM 43854]
gi|449421992|gb|EMD27383.1| NADH dehydrogenase [Amycolatopsis azurea DSM 43854]
Length = 442
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 105/399 (26%), Positives = 160/399 (40%), Gaps = 64/399 (16%)
Query: 77 KKKP-RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
K +P RI +LGGG+ GLYTA L+ ++ ++ V +VD + P L E +G ++
Sbjct: 5 KSEPTRILVLGGGYVGLYTAYGLQKMLRANEA--SVTVVDPQPHMTYAPFLPEAAAGAIE 62
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ +L V RV + + V A H +E + YD L
Sbjct: 63 PRHVVVPLRRVLKRCHV--LTARVTKI-EHERKAVTVEAADGH-----VEQ---LNYDVL 111
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDA--------CRVDRKLSELERRNFERLEEKGI 247
V++LGA ++ +PG E F T+ +A ++D S L+ +RL
Sbjct: 112 VVALGAVARILPIPGLVEEGIAFKTIGEAIYLRNHVMTKLDEAASTLDPEQRKRL----- 166
Query: 248 VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF----VRCIRRVGEFEASVKQPE 303
+ T+ G G AL L V Y+ V IR V A PE
Sbjct: 167 -----LTFTVVGGGFAGIE--ALAELEDMTRFAVENYYPNLKVEDIRWVLVEAAGRILPE 219
Query: 304 SGAIPNIAADKNSDKYILE--LQPAIKGLES--------QIFEADLVLWTVGSK--PLLP 351
+ + +K +E L A K E+ F+ D ++WT G K P+L
Sbjct: 220 VRETLGVYTVEQLEKRGIEVYLSTAAKSFENGHVVLSDGTEFDTDTIIWTAGVKANPVLA 279
Query: 352 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS------GRPLPAT 405
DLPL+ RG+ E + V GHP ++ GD++A+ D S P
Sbjct: 280 S--------SDLPLDKRGRVEATAAMQVVGHPDVWTAGDNAAVPDLSRTEQDPTATCPPN 331
Query: 406 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
AQ A +QA N+ I + +NLG + LG
Sbjct: 332 AQHAVRQARLLSKNIIKVIRGGKPKDYYHKNLGAVASLG 370
>gi|113868698|ref|YP_727187.1| NADH dehydrogenase type2 [Ralstonia eutropha H16]
gi|113527474|emb|CAJ93819.1| NADH dehydrogenase type2 [Ralstonia eutropha H16]
Length = 441
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 151/360 (41%), Gaps = 26/360 (7%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV+LVD+ ++KP+L+E+ +G +D +A A F+ ++ L D
Sbjct: 34 QAQVVLVDRLPTHIWKPLLHEVAAGSMDPNTHQLEYA---AQARWHHFEFQLGELTGIDR 90
Query: 168 L--GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
+ ++ + G LL + + YD LVL++G VPGAAE A + A
Sbjct: 91 IRKTISVSASFDEDGAELLPAREL-PYDTLVLAIGCVTHFFGVPGAAENAIALDVVAQAE 149
Query: 226 RVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAA-----LKVLSARKVQL 280
R ++L R G V+ I G G +A VLSA +
Sbjct: 150 RFRKRLIAACVRAQNWRGRVGADGRPRVDVAIIGAGATGVELSAELRNTAHVLSAYGLHQ 209
Query: 281 V---LGYFVRCI----RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLES 332
+ + I R + V + + + D + + + E+ P A+
Sbjct: 210 LDPRRDVHIHVIEAGPRILPALSERVSVETAKLLKKLDVDVLTSERVTEVTPQAVLTASG 269
Query: 333 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSS 392
+ +ADL +W G PP LP++ +GQ TL +G P IFA GD +
Sbjct: 270 KHIDADLTVWAAGI------TAPPVLATLGLPVSRQGQIVVGPTLQSEGDPDIFAFGDCA 323
Query: 393 ALRDSSGRP-LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
+ + + +P AQ A QQA F L A ++ RPL F F++LG ++ LG A S
Sbjct: 324 SCPWAEKQTTVPPRAQAAHQQATFLYSALRARLDGRPLPSFAFKDLGSLVSLGHFSAVGS 383
>gi|456862519|gb|EMF81062.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira weilii
serovar Topaz str. LT2116]
Length = 423
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/435 (20%), Positives = 174/435 (40%), Gaps = 56/435 (12%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +K +I ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 ESRKRKIVVIGAGFGGLQVVKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYDW 194
+IA L+ +R+ + V G T + YD+
Sbjct: 58 PADIAIPIRSLVG--------ERLNVTV------VLGEATKVDLATKTVYYQNTSTNYDY 103
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG---IVQAI 251
L+LS GA+ ++ L+DA ++ KL +FE+ E G +V+A+
Sbjct: 104 LILSAGAKSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKAL 159
Query: 252 NVETTICPTGTPGNREAALKVLSARKVQLVLGYF---------VRCI----RRVGEFEAS 298
+ G P E A + Q++ F + I R + F+ S
Sbjct: 160 --LNYVIIGGGPTGVELAGSIAELSH-QIIRDEFHTIDPALSKITLIEAAPRLLMTFDPS 216
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
+ + + + + + ++++ LE ++ + V+W G + N
Sbjct: 217 LGEFTKKRLESRGVEVLTGTRVIDINEQGVQLEGKMIPTETVIWAAGVQA--------NG 268
Query: 359 RLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416
L L+ G+ DE V+GHP +F +GD + RPLP + VA QQ +
Sbjct: 269 IASTLGVTLDRGGRVIVDEFCNVEGHPEVFVIGDIANYSKGLERPLPGVSPVAMQQGRYV 328
Query: 417 GWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIR 476
+ + ++ FR+ + G M +GR DA ++ + G G A +L
Sbjct: 329 AALIQGDLKNKKRKSFRYVDKGSMATIGRTDAVAQVGVLK---MKGLFGWLAWLFVHLFY 385
Query: 477 LPTDEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 386 QVGFKNKVTILITWV 400
>gi|398380303|ref|ZP_10538421.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium sp. AP16]
gi|397721619|gb|EJK82167.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium sp. AP16]
Length = 425
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 105/423 (24%), Positives = 172/423 (40%), Gaps = 93/423 (21%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCP- 164
++ L+D+ +F+P+LY+ LL+ AW I FF+DR ++
Sbjct: 33 RITLIDRRNHHLFQPLLYQVATTLLATSEIAWPIR------------NFFRDRPEVTTLL 80
Query: 165 SDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEF 214
++ GV+ + TV L++G + YD LVL+ GA EP V PG
Sbjct: 81 AEVAGVD-----SQAHTVTLKNGNTIGYDTLVLATGATHAYFGHDEWEP---VAPG---- 128
Query: 215 AFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVL 273
TLEDA + R+ L E+ E+ + I A+ + TI G G A +
Sbjct: 129 ---LKTLEDATTIRRRVLLAFEQAELEK--DPAIRDAL-LTFTIVGAGPTGVELAGIIAE 182
Query: 274 SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLES 332
ARK + R + +A + E+G P + A ++ EL A K LE
Sbjct: 183 LARKT------LPKEFRNIDTSKARIILVEAG--PRVLAS-----FVEELSDYAQKALEK 229
Query: 333 QIFEADL-----------------------VLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
E L ++W G + P + D+P + G
Sbjct: 230 LGVEIHLGKPVTSCTAEGVTIGDTFVPCRTIVWAAGVQ------ASPAAKWLDVPADRAG 283
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
+ D+ L G P IF +GD++A+ G P+P A A QQ + + A + +P
Sbjct: 284 RVVVDKELHAPGQPDIFVIGDTAAVTREDGSPVPGIAPAAKQQGAYVAKVIRAKLAGQPA 343
Query: 430 L-PFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGV 488
PF +++ G + +G++ A + ++ L G + LA++ L R+ V
Sbjct: 344 PGPFHYRHQGSLATIGKSAAIIDFGRIK---LKGWLAWWVWGLAHIYFLIGTRWRIAVAW 400
Query: 489 SWL 491
SWL
Sbjct: 401 SWL 403
>gi|304438482|ref|ZP_07398422.1| NADH dehydrogenase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304368565|gb|EFM22250.1| NADH dehydrogenase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 427
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 109/449 (24%), Positives = 176/449 (39%), Gaps = 79/449 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ + I+G GFGG++ A L + ++ LVD+ +F+P+LY++ + + A E
Sbjct: 4 QKHVVIVGAGFGGVHLAKELAQ------ENVRITLVDRHNYHLFQPLLYQVSTAVLSASE 57
Query: 139 IA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA P A N V FF + GV+ G VLL + YD+LVL
Sbjct: 58 IAYPTRAFFRNNNNVNFFMAKAT--------GVD------QGRRVLLTDHGEISYDYLVL 103
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELER--------RNFERLEEKGIV 248
+ G A ++ TL++A + + E ER ERL V
Sbjct: 104 AAGGTTNFFGNESVARNSYGMKTLQEAIALRGHIVHEFERASKKTDPSHTEERLRHLNFV 163
Query: 249 QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV--GEFEASVKQPESGA 306
I G G + A + ++G F + + E ++ +
Sbjct: 164 --------IVGGGATG-------IEMAGAIMELIGVFKKEFHNIDFSEVHVTLLEAMGSV 208
Query: 307 IPNIAAD-----------KNSDKYILELQPAIKG-----LESQIFEADLVLWTVGSKPLL 350
+P + D K D + A G + +I V+W G +
Sbjct: 209 LPMVPPDLQQHTIDVLRKKGVDVRLNTAVTAYDGNDLVLKDGEIISTKTVIWAAGVRA-- 266
Query: 351 PHVEPPNNRLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 408
+ + D ++ G+ +E L VKG +FA+GD + + + RPLP A V
Sbjct: 267 ------QDFIKDCGGEVDRAGRIIVEENLLVKGSDCVFAIGDCANFQHGTERPLPTVAPV 320
Query: 409 AFQQADFAGWNLWAAINDR---PLLPFRFQNLGEMMILGRNDAAVS-PSFVEGVTL--DG 462
A Q+A N+ A I+ + L F + +LG M +GR +A ++ P V G L G
Sbjct: 321 ATQEAMQVKANIMALISGKMPDQLGKFVYHDLGAMATIGRGEAVMNGPMPVLGFNLKASG 380
Query: 463 PIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
A L +LIRL V + W+
Sbjct: 381 FFAWFAWMLVHLIRLAGKYADFTVSIKWI 409
>gi|325962593|ref|YP_004240499.1| NADH dehydrogenase, FAD-containing subunit [Arthrobacter
phenanthrenivorans Sphe3]
gi|323468680|gb|ADX72365.1| NADH dehydrogenase, FAD-containing subunit [Arthrobacter
phenanthrenivorans Sphe3]
Length = 501
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 164/407 (40%), Gaps = 45/407 (11%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V LVD ++P L E+ G ++A L T + + RV + DH
Sbjct: 40 VTLVDPLPYMTYQPFLPEVAGGNIEARHAVVSHRKHLQQT--ELIQGRVTSI---DHENR 94
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
+A GG + V Y +VL+ GA + + G A+ T+E+A + K
Sbjct: 95 TAVVAPADGG-----APFEVPYFDVVLAAGAITRTFPIKGLADKGIGLKTIEEAVALRNK 149
Query: 231 LSELERRNFERLEEKGIVQAINVETTICPTGTPGNR---------EAALKVLSARKVQLV 281
+ LER +A + + G G AA++ K + V
Sbjct: 150 V--LERIELASTMTDPAARARALTFVVVGGGFAGIECITEMEDLARAAVRNNPRVKQEEV 207
Query: 282 LGYFVRCIRRVGEFEASVKQPE--------SGAIPNIAADKNSDKYILELQPAIKGLESQ 333
V + R+ E + KQ E G + +S + L+L +Q
Sbjct: 208 RFVLVEAMGRIMP-EVTAKQAEWVVEHLRSRGIEVLLNTSLDSAEGTLKLINLPDKTPAQ 266
Query: 334 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI----FALG 389
FEAD ++WT G + P R D PL RG+ L + G I +A G
Sbjct: 267 EFEADTLVWTAGVQ------ANPMVRSTDFPLEPRGRVRVLPDLRIAGDEGIIDNAWAAG 320
Query: 390 DSSALRDSSGRPLP-----ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
D +A+ D +G+ LP AQ A +QA NLWA+ D+PL ++ +NLG + G
Sbjct: 321 DVAAVPDLTGKGLPDGTCVPNAQHALRQAKRLAKNLWASRWDKPLKDYKHKNLGAVAGFG 380
Query: 445 RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+ + V + L G + A + + + +PT E + +V ++W+
Sbjct: 381 EWKGVANINLVGSIGLKGGLAWLAHRGYHGLAMPTFERKFRVILNWI 427
>gi|445495298|ref|ZP_21462342.1| NADH dehydrogenase Ndh [Janthinobacterium sp. HH01]
gi|444791459|gb|ELX13006.1| NADH dehydrogenase Ndh [Janthinobacterium sp. HH01]
Length = 424
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 147/390 (37%), Gaps = 67/390 (17%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK------DRVK 160
K+ +VLLVD+ +KP+L+ + SG+ D F +F + DR
Sbjct: 28 KRARVLLVDRYPGHFWKPLLHTVASGKCDPRVEELSFPAQAVEHDFEFIQGEVLCLDRAH 87
Query: 161 ---LLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFP 217
L P + G++G C + YD LVL+LGA VPGAA+ A
Sbjct: 88 QTITLAPRNRSGIDG--VCR-----------TIAYDKLVLALGAVTNFYNVPGAADHALT 134
Query: 218 FSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARK 277
+++DA E+ RR F K Q V+ I G G AA SAR
Sbjct: 135 LDSVDDA--------EVFRRRFIDACIKAGEQKTQVDVVIVGGGATGVELAAELSNSARA 186
Query: 278 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP------------ 325
+ Y V + + SV + +P + + +++ +L+
Sbjct: 187 LA---AYRVHTLNPETDIRISVIERGQHLLPQLHP-QQANRAARQLRSLGIDVLTGTAVA 242
Query: 326 -----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPN-NRLHDLPLNARGQAETDETLCV 379
A+ ADL LW G VE P L +N Q D +LC
Sbjct: 243 QVTAEAVIDAAGTAHRADLTLWAAG-------VEAPQLCATFGLTVNNLRQIVVDSSLCS 295
Query: 380 KGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGE 439
+I+ALGD ++ P AQVA QQA F +L + P FR+ + G
Sbjct: 296 TNDSQIYALGDCASYVCPIKGAAPPRAQVAHQQAMFLA-DLLSRRGGTPRPDFRYHDYGS 354
Query: 440 MMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
++ LG P GV G S R
Sbjct: 355 LVSLG-------PQTAVGVLTGAVTGKSIR 377
>gi|313672518|ref|YP_004050629.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Calditerrivibrio nitroreducens DSM 19672]
gi|312939274|gb|ADR18466.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Calditerrivibrio nitroreducens DSM 19672]
Length = 458
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 96/410 (23%), Positives = 160/410 (39%), Gaps = 68/410 (16%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V L+D++ +F PML E++SG V I ++ F +D V + + L
Sbjct: 30 VTLIDKNNYSLFTPMLPEVVSGNVTPDNIVFPLREITKKNNSNFIRDTVLYVDRENKL-- 87
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
+ C G YD+L+++ G+ A E F + ++ D +
Sbjct: 88 ---VKCEKGE---------YHYDYLIIATGSTTNFRGNKTAEEHCFEYKSISDGIALKYF 135
Query: 231 LSEL----------ERRNFERLEEKGIVQAINVETTICPTGTPGNREAA-------LKV- 272
L EL ERR + +I G G A LK+
Sbjct: 136 LIELLEAAVSTPKEERRRI-------------LSFSIIGGGITGVELACELVDFIKLKIK 182
Query: 273 -----LSARKVQLVLGYFVRCIRRVGEFEASVKQ----PESGA--IPNIAADKNSDKYIL 321
+S ++ + + + I + S+K E G I N + D+ SD I
Sbjct: 183 KDYSSISYDDFEVTIFEYAKNILPAIDESQSIKAQQYVEEKGIKIINNASVDRVSDGVIY 242
Query: 322 ELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKG 381
Q E + ++++WT G K N RL D R + + T
Sbjct: 243 YNQNG----EVKEHLTNIIVWTAGVKAQDFLKSVSNERLPD----GRIKVNKNLTPVDAQ 294
Query: 382 HPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 441
+ IF +GDSSA + G+ LP A +A QQA A N+ N PL F++ + G ++
Sbjct: 295 NDGIFVIGDSSAY-EYKGKVLPPVAPLAMQQATIAVKNILNLENGFPLQDFKYIHFGYLV 353
Query: 442 ILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
LG+N++ V+ + G+ G + KL Y+ ++ +L V W+
Sbjct: 354 SLGKNNSVVN---LFGLKFRGAFAYILWKLVYIYKIGMLRKQLGVFFDWV 400
>gi|397729223|ref|ZP_10496010.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Rhodococcus sp. JVH1]
gi|396934830|gb|EJJ01953.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Rhodococcus sp. JVH1]
Length = 440
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 104/435 (23%), Positives = 181/435 (41%), Gaps = 59/435 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI ++G GF G A L + D + + L+ + ++ P+L E+ G +DA +
Sbjct: 11 RIVVVGSGFAGFECARALTRRLRGTDTR--ITLISAHDYMLYTPLLPEVAGGILDARFVT 68
Query: 141 PRFADLLANTGVQFFK---DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
A+ L N V+ K D V + H+ C HG +E V +D +VL
Sbjct: 69 VPLAEALPN--VELVKGNVDSVDFEARTVHV-----TDCEHG----VED---VAWDRVVL 114
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETT 256
+ G+ +L +PG AE A T +A D+ L+++E ER + + A
Sbjct: 115 TPGSVTRLFDIPGLAEHARGLKTPAEALYFRDQLLTQIELA--ERDTDPSVADARRTVVV 172
Query: 257 ICPT--GTP--------GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA 306
+ + GT + AA + L K++ +L + V + G
Sbjct: 173 VGASYAGTELTAQLRALADEAAARRNLDPAKIRFLL------LDAADTVMPEVGEKLGGK 226
Query: 307 IPNIAADKNSD----KYILELQPAIKGLE-SQIFEADLVLWTVG--SKPLLPHVEPPNNR 359
+ ++ + D + EL P L+ + V W G + PL+ + P +
Sbjct: 227 VLDVLRSRGIDVRLETTLTELGPEHVTLDDGTVIPTRTVAWVTGVTASPLIDTLGLPTEK 286
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAG 417
G+ L V GHP +FA GD++A+ D +SG P TAQ A +Q
Sbjct: 287 ---------GRLTVRPDLSVDGHPDVFAGGDAAAVPDPKNSGSITPPTAQHAVRQGQTLA 337
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
N+ A++ P+ +++G ++ LG A +P G+ L G + + +L +
Sbjct: 338 RNVAASLGVGDPKPYSHRDMGLVVDLGPGFAVANPL---GIQLSGFLAKVVTRAYHLYAM 394
Query: 478 PTDEHRLKVGVSWLT 492
P +R V +++LT
Sbjct: 395 PNTANRWAVALAYLT 409
>gi|329769817|ref|ZP_08261218.1| hypothetical protein HMPREF0433_00982 [Gemella sanguinis M325]
gi|328838179|gb|EGF87797.1| hypothetical protein HMPREF0433_00982 [Gemella sanguinis M325]
Length = 396
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 106/394 (26%), Positives = 163/394 (41%), Gaps = 71/394 (18%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ GL T L+ V + K V LV+++ L+E+ +G + A +I
Sbjct: 4 VVILGAGYAGLTTLKGLKKAVKAGEVK--VTLVNKNSYHYDTVNLHEVSAGNIPAKDICI 61
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ GV+F +D V + L +L ++YD LV+ LG
Sbjct: 62 DIKDVVV-PGVEFVQDEVIKIDTEKKL--------------VLTKKHELDYDILVIGLGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
+P+ + G AE A P + + A ++ L + R + EEK + ++ + TG
Sbjct: 107 QPETFGIEGMAENALPIADVLAAEKIATTLED-NFRKYATSEEKDVK---DISVIVGGTG 162
Query: 262 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI--AADKNSDKY 319
G L L RK +L C + G E VK A P + DK Y
Sbjct: 163 LAGIE--FLGELVHRKKEL-------C-NKYGIDEKLVKIYGLDAAPTLLPMFDKEYSDY 212
Query: 320 ---ILE-------LQPAIKGL-----------ESQIFEADLVLWTVGSKPLLPHVEPPNN 358
LE L IKG E + A ++WT G + N
Sbjct: 213 ARKYLEDNGIEIILGAGIKGATKDSFTIEVDGERKELRASTLVWTAGVR---------GN 263
Query: 359 RLHD--LP-LNARGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPATAQVAFQQAD 414
+L D P L+ RG+ T + L V GH I+ +GD +A ++ RP P TAQ+A Q
Sbjct: 264 KLMDETFPELSKRGRLVTTQQLTVPGHDDIYIVGDCAAFIETGQERPYPTTAQIANQMGA 323
Query: 415 FAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ G A I+ + F++ N G + LG D
Sbjct: 324 YVG----ARISGKESGDFKYVNRGVVCSLGLKDG 353
>gi|313895815|ref|ZP_07829369.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312975240|gb|EFR40701.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 426
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 101/442 (22%), Positives = 180/442 (40%), Gaps = 64/442 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++ + I+G GFGG+ A L + ++ LVD+ +F+P+LY++ + +
Sbjct: 3 EQKHVVIVGAGFGGICLAKELAK------ENVRITLVDRHNYHLFQPLLYQVATAVLAVP 56
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EIA P A N V+F L ++ GV+ VLL + + YD+LV
Sbjct: 57 EIAYPTRAFFKHNKNVEF------QLASAE--GVDQER------KVLLTNHGEIAYDYLV 102
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTL--------------EDACRVDRKLSELERRNFERL 242
L+ GA A+ ++P +L E A RV+ + +R+ +
Sbjct: 103 LAAGATTNFFGNESVAQNSYPMKSLQEAIALRSHLVHEFERAARVNETDDDERQRHLNFV 162
Query: 243 EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV--- 299
G I + I +E L +V ++L + +G V
Sbjct: 163 IVGGGATGIELAGAIIELIDVFKKE--YHSLDFSRVHVIL------LEAMGSVLPMVPPD 214
Query: 300 -KQPESGAIPNIAADKNSDKYILELQPAIKGLES-QIFEADLVLWTVGSKPLLPHVEPPN 357
+Q + D + + + + L+ + V+W G +
Sbjct: 215 LQQKTIDVLRKKGVDVRLNTAVTDYDGSTLSLKGGDVIPTKTVIWAAGVRA--------Q 266
Query: 358 NRLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ + D ++ G+ +E L V+G +FA+GD + + + RPLP A VA Q+A
Sbjct: 267 DFIKDCGGEVDRAGRIIVEENLLVRGSDCVFAIGDCANFQHGTERPLPTVAPVATQEALQ 326
Query: 416 AGWNLWAAINDRP---LLPFRFQNLGEMMILGRNDAAVS-PSFVEGVTL--DGPIGHSAR 469
G N+ A I+ + L F +Q+LG M + R +A ++ P V G+ + G I +A
Sbjct: 327 VGRNIMALIHGKKPEELGRFVYQDLGAMATIARGEAVMNGPIPVIGINMKASGFIAWTAW 386
Query: 470 KLAYLIRLPTDEHRLKVGVSWL 491
+L+RL V + W+
Sbjct: 387 MFVHLMRLAGKYANFTVMMKWI 408
>gi|302338113|ref|YP_003803319.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Spirochaeta smaragdinae DSM 11293]
gi|301635298|gb|ADK80725.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Spirochaeta smaragdinae DSM 11293]
Length = 694
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 159/413 (38%), Gaps = 57/413 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQV--LLVDQSERFVFKPMLYELLSGEVDA 136
K I ILGGG+GG+ TA +L Q K+P++ L+D++ L+E+ V+
Sbjct: 3 KTNIVILGGGYGGVETAKKLHK---QFKKRPEIEITLIDRNPYHTLMTELHEVAGARVEP 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+ FA + + V D + A G L EYD+LV
Sbjct: 60 DSVRVSFARIFSGKRVHVVLDEIT--------------AIDFTGKKLTGKSDSYEYDYLV 105
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
L GAEP VPGA E AF + EDA ++ + + L+ + + +
Sbjct: 106 LGTGAEPCFFGVPGAQEHAFTLWSFEDAMKIREHTERMFLEASQTLDPEERKKLLTF--A 163
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES-GAIPNIAADKN 315
+ G G A L R+ L Y + E E + E+ G I I +K
Sbjct: 164 VAGAGFTGIELAG--ELVERRSTLCREY------GIDESEVRIMVVEALGEILPILPEKL 215
Query: 316 SDKYI--LELQPAIKGLESQIFE---------------ADLVLWTVGSKPLLPHVEPPNN 358
K + LE LES+I E A +WT G E
Sbjct: 216 QQKTMKYLEKHGVEICLESRITEVTPDGFSTNNCDSHDAKTFIWTCGVFGTAFGGEL--- 272
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
DL + + DE L G +F GD ++ +PLP + A Q A+
Sbjct: 273 ---DLEQGHCSRQKADEYLRSPGKENVFLTGDMVWFLENE-KPLPQIVETALQTAEVVAH 328
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
N+ A+I P+ F+ G M+ LG AVS + G+++ G + + L
Sbjct: 329 NVAASIEGSPMKAFKSNYHGFMVSLG-GKYAVSHNM--GISMSGFFATALKHL 378
>gi|310814963|ref|YP_003962927.1| NADH dehydrogenase protein [Ketogulonicigenium vulgare Y25]
gi|385232518|ref|YP_005793860.1| NADH dehydrogenase transmembrane protein [Ketogulonicigenium
vulgare WSH-001]
gi|308753698|gb|ADO41627.1| NADH dehydrogenase protein [Ketogulonicigenium vulgare Y25]
gi|343461429|gb|AEM39864.1| putative NADH dehydrogenase transmembrane protein
[Ketogulonicigenium vulgare WSH-001]
Length = 420
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 114/444 (25%), Positives = 178/444 (40%), Gaps = 83/444 (18%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ ++G GF GL L+ + L+DQ +F+P+LY++ + + EIA
Sbjct: 4 RVVVVGAGFAGLQLVQNLKG------SGCDITLIDQRNHHLFQPLLYQVATTLLATSEIA 57
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
L+ KD LL D GV+ VLL G V YD LVL+ G
Sbjct: 58 WPIRRLMRPR-----KDVTTLLATVD--GVD-----RETREVLLRDGTRVPYDTLVLATG 105
Query: 201 AEPKLDVVPGAAEF---AFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
A G E+ A TLEDA + R+L FER E
Sbjct: 106 AR---HAYFGRDEWEADAPGLKTLEDATTIRRRLL----LAFERAEL------------- 145
Query: 258 CPTGTPGNREAALKV-----------LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA 306
T P REA L L+ +L R RR+ A + E+G
Sbjct: 146 --TTDPAEREALLTFAIIGAGPTGVELAGIIAELAHRILPREFRRIDTDRARIMLIEAGP 203
Query: 307 ------IPNIA--ADKNSDKYILEL-------QPAIKG--LESQIFEADLVLWTVGSKPL 349
PN++ A ++ K +E+ Q + KG L + A V+W G +
Sbjct: 204 RILPAFSPNLSDYAAQSLQKVGVEVLTGKPVTQISDKGIVLGDEPIAARTVIWAAGVQ-- 261
Query: 350 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 409
+ L + + G+ L + G P IF LGD++ + +S G+P+P A A
Sbjct: 262 ---ASRAKDWLGGVEADRAGRVMVQPDLTLAGAPDIFVLGDTAHV-ESDGKPVPGVAPAA 317
Query: 410 FQQADFAGWNLWAAI--NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 467
QQ ++A + + D P PF+++++G + +GRN A + + + G +
Sbjct: 318 KQQGEYAAKLIRTRLEGKDAPA-PFKYKHMGNLATIGRNSAVIEFGKFQ---MRGWLAWW 373
Query: 468 ARKLAYLIRLPTDEHRLKVGVSWL 491
A++ L R+ V +SWL
Sbjct: 374 IWGFAHIYFLIGTRSRIVVLLSWL 397
>gi|392971571|ref|ZP_10336965.1| putative NADH dehydrogenase [Staphylococcus equorum subsp. equorum
Mu2]
gi|403047112|ref|ZP_10902580.1| NADH dehydrogenase FAD-containing subunit [Staphylococcus sp. OJ82]
gi|392510458|emb|CCI60251.1| putative NADH dehydrogenase [Staphylococcus equorum subsp. equorum
Mu2]
gi|402762646|gb|EJX16740.1| NADH dehydrogenase FAD-containing subunit [Staphylococcus sp. OJ82]
Length = 402
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 96/405 (23%), Positives = 156/405 (38%), Gaps = 83/405 (20%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ ++ +LG G+ GL T +L+ + D+ +V L+++++ L+E +G +
Sbjct: 5 RKKVLVLGAGYAGLQTITKLQKQISADE--AEVTLINKNDYHYEATWLHEASAGTI---- 58
Query: 139 IAPRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ DLL KD+V + + N T G I +YD LV+
Sbjct: 59 ---SYEDLLYPVESVVNKDKVNFVKAEVTKIDRNAKKVETDAG--------IFDYDILVV 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK--------------------------- 230
SLG E + + G + AF + A ++ R
Sbjct: 108 SLGFETETFGIKGMKDHAFQIENVLTARKLSRHIEDKFANYASSKQKDDKDLAIIVGGAG 167
Query: 231 ------LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 284
L EL R E + G+ Q V+ T EAA K+L +LV
Sbjct: 168 FTGVEFLGELTDRIPELCNKYGVEQG-KVKITCV--------EAAPKMLPMFSDELVNHA 218
Query: 285 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 344
R EF+ P +AA N +++++ E Q EA+ +W
Sbjct: 219 VSYLEDRGVEFKIGT--------PIVAA--NEKGFVVKVND-----EEQQLEANTAVWAA 263
Query: 345 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLP 403
G V N RG+ T + L ++G+ +FA+GD SA + RPLP
Sbjct: 264 G-------VRGSNLMEESFEGVKRGRIVTKQDLTIEGYDDVFAIGDVSAFIPAGEERPLP 316
Query: 404 ATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
TAQ+A QQ + N+ + +P F + + G + LG ND
Sbjct: 317 TTAQIAMQQGEQTAKNIINILEGQPTQEFEYVDRGTVCSLGSNDG 361
>gi|403744059|ref|ZP_10953504.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Alicyclobacillus hesperidum URH17-3-68]
gi|403122276|gb|EJY56500.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Alicyclobacillus hesperidum URH17-3-68]
Length = 394
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 142/353 (40%), Gaps = 58/353 (16%)
Query: 113 LVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNG 172
L+++ FK +L+E+ G DA A D+L KD V+ L
Sbjct: 30 LINKHSYHYFKTLLHEVAGGRHDAQTYAIDLRDVLHRDTSVIVKDVVRELD--------- 80
Query: 173 PMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS 232
H V E+G EYD LV++LG++ +PG AF +L A + +
Sbjct: 81 ----LHKNMVWTEAGY-YEYDKLVVALGSQTATFGIPGLTSHAFVLDSLATA----KSIR 131
Query: 233 ELERRNFERLEEKG------IVQAINVETTICPTGTPGNREAALKV---LSARKVQLVLG 283
E +F R G IV A T + G + L + LSA QL L
Sbjct: 132 EHIEASFLRYGRTGDPNDLKIVVAGGGLTGVELMGELADFAPKLLLQHQLSADDFQLTLV 191
Query: 284 Y--------FVRCIRRVGEFEASVKQPESGA---IPNIAADKNSDKYILELQPAIKGLES 332
+ R +R++ A K E G + N+++ +L + K L +
Sbjct: 192 HAHDEILPNVHRDLRQI----AMQKLQERGVRLVLNERVIGANANEVLL---ASGKSLHA 244
Query: 333 QIFEADLVLWTVGSKPLLPHVEPPNN-RLHDLPLNARGQAETDETLCVKGHPRIFALGDS 391
F +WT G VE P+ R LP++ R + E D L V+GHP +FA+GDS
Sbjct: 245 HTF-----IWTGG-------VEAPSLLRQSGLPIDDRNRIEVDSYLQVQGHPDVFAIGDS 292
Query: 392 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
+ G LP T QVA Q N+ ++ + F + + G + LG
Sbjct: 293 ARFTTKDGEVLPPTGQVAEQMGKHVADNIIRFCHNDTMDEFVYHDHGMVASLG 345
>gi|383642557|ref|ZP_09954963.1| dehydrogenase, partial [Streptomyces chartreusis NRRL 12338]
Length = 599
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 115/435 (26%), Positives = 185/435 (42%), Gaps = 48/435 (11%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF 143
I+G GF G Y A R +L + + L++ ++ F++ P+L ++ +G ++ +
Sbjct: 2 IVGAGFAG-YRAAR--TLARTTRGRAHITLLNPTDYFLYLPLLPQVAAGVLEPRRVTVSL 58
Query: 144 ADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
+D L + + + DRV L + H GP GGT+ YD LVL+ G+
Sbjct: 59 SDTLPDVRLVLGEADRVDLDGRTLHY--TGPEG--DGGTLA--------YDRLVLAAGSV 106
Query: 203 PKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
KL +PG AE+A F L +A + D ++E + A + G
Sbjct: 107 NKLLPIPGVAEYAHGFRGLPEALYLRDHVTRQVE---LAAAADDPKTCAARCTFVVVGAG 163
Query: 262 TPGNREAALKVL----SARKVQLVLGYFVRCI------RRVGEFEASVKQPESGAIPNIA 311
G AA + RK L G R + R + E + + +
Sbjct: 164 YTGTEVAAHGQMFTDAQVRKHPLRQGMRPRWMLLDVAPRVLPEMDEKLSATADRVLRQRG 223
Query: 312 ADKNSDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQ 370
D + E P + + + E ++W VG +P P VE LPL +G+
Sbjct: 224 VDVRMGTSVKEATPDGVVLTDGEFVETRTLVWCVGVRPD-PLVE-----SLGLPLE-KGR 276
Query: 371 AETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNLWAAIN-DR 427
D L V G P +FA GD +A+ D G P TAQ A++ A N+ A++
Sbjct: 277 LLVDPHLQVPGRPELFACGDVAAVPDLEKPGSYTPMTAQHAWRHGKVAAENVAASLGLGG 336
Query: 428 PLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG-PIGHSARKLAYLIRLPTDEHRLKV 486
P+R ++LG ++ LG AA +P GV L G P G AR +L +P + R++V
Sbjct: 337 ARKPYRHRDLGFVVDLGGAKAAANPL---GVPLSGVPAGAVARGY-HLAAMPGN--RVRV 390
Query: 487 GVSWLTKSAIDSVAL 501
WL + + A+
Sbjct: 391 AADWLLDAVLPRQAV 405
>gi|320529376|ref|ZP_08030464.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas artemidis
F0399]
gi|320138342|gb|EFW30236.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas artemidis
F0399]
Length = 426
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 101/442 (22%), Positives = 180/442 (40%), Gaps = 64/442 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++ + I+G GFGG+ A L + ++ LVD+ +F+P+LY++ + +
Sbjct: 3 EQKHVVIVGAGFGGVCLAKELAK------ENVRITLVDRHNYHLFQPLLYQVATAVLAVP 56
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EIA P A N V+F L ++ GV+ VLL + + YD+LV
Sbjct: 57 EIAYPTRAFFKHNKNVEF------QLASAE--GVDQER------KVLLTNHGEIAYDYLV 102
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTL--------------EDACRVDRKLSELERRNFERL 242
L+ GA A+ ++P +L E A RV+ + +R+ +
Sbjct: 103 LAAGATTNFFGNESGAQNSYPMKSLQEAIALRSHLVHEFERAARVNETDDDERQRHLNFV 162
Query: 243 EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV--- 299
G I + I +E L +V ++L + +G V
Sbjct: 163 IVGGGATGIELAGAIIELIDVFKKE--YHSLDFSRVHVIL------LEAMGSVLPMVPPD 214
Query: 300 -KQPESGAIPNIAADKNSDKYILELQPAIKGLES-QIFEADLVLWTVGSKPLLPHVEPPN 357
+Q + D + + + + L+ + V+W G +
Sbjct: 215 LQQKTIDVLRKKGVDVRLNTAVTDYDGSTLSLKGGDVIPTKTVIWAAGVRA--------Q 266
Query: 358 NRLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ + D ++ G+ +E L V+G +FA+GD + + + RPLP A VA Q+A
Sbjct: 267 DFIKDCGGEVDRAGRIIVEENLLVRGSDCVFAIGDCANFQHGTERPLPTVAPVATQEALQ 326
Query: 416 AGWNLWAAINDRP---LLPFRFQNLGEMMILGRNDAAVS-PSFVEGVTL--DGPIGHSAR 469
G N+ A I+ + L F +Q+LG M + R +A ++ P V G+ + G I +A
Sbjct: 327 VGRNIMALIHGKKPEELGRFVYQDLGAMATIARGEAVMNGPIPVIGINMKASGFIAWTAW 386
Query: 470 KLAYLIRLPTDEHRLKVGVSWL 491
+L+RL V + W+
Sbjct: 387 MFVHLMRLAGKYANFTVMMKWI 408
>gi|386875496|ref|ZP_10117662.1| pyridine nucleotide-disulfide oxidoreductase [Candidatus
Nitrosopumilus salaria BD31]
gi|386806697|gb|EIJ66150.1| pyridine nucleotide-disulfide oxidoreductase [Candidatus
Nitrosopumilus salaria BD31]
Length = 446
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 113/472 (23%), Positives = 192/472 (40%), Gaps = 123/472 (26%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P KKK I ILGGGFGG++ L+ + D K + +V + F++ PML E+ SG +
Sbjct: 2 PSKKK--ILILGGGFGGMHVLKELQKKI--DVKNASITIVSEDNYFLYTPMLPEVASGML 57
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVL---LESGLI-- 189
+ +I T +++F C S A + TV LE L+
Sbjct: 58 NPRDIT---------TAIRYF-------CVS---------AKFYQATVFSVDLEQKLVTI 92
Query: 190 ----------VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF 239
+EYD+LVL++G+ E +F T+EDA +E RN
Sbjct: 93 TRKFDGKDHALEYDYLVLAVGSINNFFGNKAIEENSFTIKTVEDA---------IELRN- 142
Query: 240 ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299
Q + + TG+ G ++ L V+G + +GE V
Sbjct: 143 ---------QILLMMEIAAQTGSMGLQQKFLTFT-------VVGAGFAGVETIGEINHFV 186
Query: 300 KQPESGAIPNIAADKNSDKYIL----ELQP--------------------------AIKG 329
++ A P+I D N + ++ E+ P AI
Sbjct: 187 RKSVKQAYPSIV-DTNINMILISSRNEILPELNKKLGESARAYLEKVGVRIITNVKAINA 245
Query: 330 LES-------QIFEADLVLWT--VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVK 380
ES +I ++WT V + ++ + +++ G+ D+ L +K
Sbjct: 246 GESYVELSDGEIIPCTTLIWTGGVTTNSMIKSMNCEHSK--------DGKILVDKYLKLK 297
Query: 381 GHPRIFALGDSSALRD-SSGRPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLG 438
H +FALGD +A+ D +G+ P TAQ A +++ N+ ++ D L F + + G
Sbjct: 298 EHSEVFALGDCAAIPDVDTGKFYPPTAQHALRESKIVAENIKKTLDGDSSLKEFSYHSKG 357
Query: 439 EMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
M +G S + G ++ G + + YL+ LPT E ++++G+SW
Sbjct: 358 MMATIGDKAGVAS---LMGHSISGVLAWVIWRTYYLLHLPTLETKIRIGISW 406
>gi|386774086|ref|ZP_10096464.1| NADH dehydrogenase, FAD-containing subunit [Brachybacterium
paraconglomeratum LC44]
Length = 457
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 104/417 (24%), Positives = 159/417 (38%), Gaps = 98/417 (23%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + ILGGG G+ TA L + + + +VD + P L E+ +G +D
Sbjct: 8 KPHVLILGGGSVGMTTASELRKTLGAE---VAITVVDPRPYMTYAPFLPEVGAGSIDPRN 64
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLV 196
+ +L TG + V + ++H V V E G L + YD+LV
Sbjct: 65 VLAPLRKIL--TGTKVVTGSVAAIRSAEHTVV-----------VDTEEGEQLEISYDYLV 111
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDAC----RVDRKLSELERRNFERLEEKGIVQAIN 252
+ LGA P+L +PG AE A F +E+A R+ L+E +L ++ +
Sbjct: 112 VGLGAVPRLLPIPGLAENAIGFKQVEEAAAVRDRILANLAEAATTKDPKLRKRLLT---- 167
Query: 253 VETTICPTGTPGNREA---------ALKV---LSARKVQLVL----------------GY 284
T G G AL+ L A ++ VL Y
Sbjct: 168 --FTFIGGGFAGGEAVSEAEDMVRDALRYYPDLHASDIRFVLVDGAPFIFPELTEDQRAY 225
Query: 285 FVRCIRRVG---EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 341
+ +R G + E + E+G I D+ FE DL++
Sbjct: 226 VLNQLRERGIEVKLETFLNSAENGVIKTSDGDE--------------------FETDLLV 265
Query: 342 WTVGSKPLLPHVEPP--NNRLHDLPLNAR-----GQAETDETLCVKGHP----RIFALGD 390
W G KP P + DLP+ G+ + L V G +FA GD
Sbjct: 266 WNAGVKP-----NPVLFDEETSDLPIVTERGPLMGKVQVLPDLRVNGEDGPFDDVFAAGD 320
Query: 391 SSALRD---SSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
+A+ D G+ P AQ A +QA N+ ++ RPL+ + +NLG LG
Sbjct: 321 CAAVPDLASGEGKFCPPNAQHAVRQAKRLADNIARSVQGRPLVDYYHKNLGVFATLG 377
>gi|325104767|ref|YP_004274421.1| NADH dehydrogenase (ubiquinone) [Pedobacter saltans DSM 12145]
gi|324973615|gb|ADY52599.1| NADH dehydrogenase (ubiquinone) [Pedobacter saltans DSM 12145]
Length = 432
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/369 (24%), Positives = 150/369 (40%), Gaps = 48/369 (13%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
DK+ +VL++D+ F+P+LY++ +G ++A IA + + + FK RV
Sbjct: 29 DKEVEVLMIDRHNYHTFQPLLYQVATGALEADSIAFPLRKIFQHQ--KNFKFRV------ 80
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
N + T+ G EYD+LVL+ G+E ++ P T+ +A
Sbjct: 81 ----ANVTQINSESNTISTSIGDF-EYDYLVLATGSETNFFGQKEIEHYSMPMKTVPEAL 135
Query: 226 RVDRKLSELERRNFER--LEEKGIVQAINVETTICPTGTPGNREA-ALKVL--------- 273
L + +NFE +E V+ + I G G A AL L
Sbjct: 136 ----NLRSMILQNFEEAVMETDEQVKEALLNFVIVGAGPTGVETAGALAELKKHVLPSDY 191
Query: 274 -----SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ-PAI 327
S K+ LV G R + F + + + D ++ + + I
Sbjct: 192 SELDFSKMKIYLVEG----ANRVLPPFSEQASRKAQSFLEEMGVDVLTNTMVDQYDGKVI 247
Query: 328 KGLESQIFEADLVLWTVGSK-PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIF 386
+ + + V+W+ G K ++P ++ + G+ +T ++G+ IF
Sbjct: 248 SFKDGKTIRTNNVVWSAGVKGAVIPGIDKAQ-------IVRGGRIKTTTYNLIEGYNNIF 300
Query: 387 ALGDSSALR-DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
A+GD S + + P AQVA QQ G NL IN+ + PF + + G M +GR
Sbjct: 301 AIGDVSYMEVEKFPNGHPGVAQVAIQQGQQLGDNLIRLINNEEVKPFDYFDKGSMATVGR 360
Query: 446 NDAAVSPSF 454
N A V F
Sbjct: 361 NKAVVDLKF 369
>gi|407689507|ref|YP_006804680.1| respiratory NADH dehydrogenase II [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292887|gb|AFT97199.1| respiratory NADH dehydrogenase II [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 430
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 147/359 (40%), Gaps = 40/359 (11%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ ++ LVD+S ++KP+L+E+ +G +D +A A +F + L
Sbjct: 28 KQAEITLVDRSRTHIWKPLLHEVAAGVIDKHSDGVDYAIHAAAHHYRFQLGEMCSLNAQA 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G VL E + YD LVL++G+ PG AE + +L+ A R
Sbjct: 88 QTITLSPLIDEEGTQVLPERE--IHYDQLVLAVGSVSNDFGTPGVAEHCYFLDSLKQAER 145
Query: 227 VDRK-LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAA-------------LKV 272
R L++L R N + E+K ++ I G G AA +
Sbjct: 146 FHRALLNQLIRINQQ--EDKD----ARIDVAIVGAGATGTELAAQLHHVANLSKAYGMPD 199
Query: 273 LSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 331
+SA ++++ + V R+ + A+ + D + E KGL
Sbjct: 200 MSASRLKITI---VEAGERILPALPERIANSARKALHKLGVDIKEQTMVAEADA--KGLI 254
Query: 332 SQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIF 386
++ +ADL++W G V+ P+ +L N Q D+ L H I+
Sbjct: 255 TKGGGRIDADLMVWAAG-------VKAPDFITKLALFETNRANQILVDKQLRSSSHKNIW 307
Query: 387 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
LGD + +G+ +P AQ A Q AD N+ + + F +++ G ++ L +
Sbjct: 308 VLGDCCGFQQENGKWVPPRAQSAHQMADIVAHNITSLFTQKDTKDFTYKDYGSLVHLSK 366
>gi|240950315|ref|ZP_04754589.1| NADH dehydrogenase [Actinobacillus minor NM305]
gi|240295179|gb|EER45990.1| NADH dehydrogenase [Actinobacillus minor NM305]
Length = 425
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 140/347 (40%), Gaps = 28/347 (8%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
KK V+L+D++ ++KP+L+E+ +G +D A + + F + + L +
Sbjct: 27 KKANVILIDRNSTHLWKPLLHEVATGSLDDGTDAVSYRAHATHHNFSFRQGTMSGLDREN 86
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ P+ G ++ E + YD LVL++G++ G E F E A
Sbjct: 87 KQVIIAPIYNEEGELLVAERR--IAYDKLVLAIGSQSNDFGTKGVKENCFFLDGSEQA-- 142
Query: 227 VDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPG-NREAALKVLSARKVQLVLGYF 285
++R E + + +V+ I G G A L +A G
Sbjct: 143 -----KMFQKRFLESVLKFSFNDDHDVKIAIVGGGATGIELSADLYNAAAHLNDYGFGKL 197
Query: 286 VRCIRRVGEFEA------SVKQPESGA----IPNIAADKNSDKYILE-LQPAIKGLESQI 334
R V EA ++ + S A + D + + E L+ + + +
Sbjct: 198 KRTNINVTLIEAGPRLIPALTEKVSAAALSELTKTGVDVRLNTMVTEALEDGLITKDGEK 257
Query: 335 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 394
EADL++W G K P + N Q E +TL ++ +GD +AL
Sbjct: 258 IEADLMVWAAGVKA------PEFTKEFGFETNRLNQIEIKDTLQTTVDDSVYVIGDCAAL 311
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 441
G+P+P AQ A Q A G N+ AA+ +PL F+F + G ++
Sbjct: 312 I-QDGKPIPPRAQAAHQMAKVCGKNIVAALEGKPLQAFKFNDKGSLL 357
>gi|425737966|ref|ZP_18856235.1| NADH dehydrogenase FAD-containing subunit [Staphylococcus
massiliensis S46]
gi|425480871|gb|EKU48034.1| NADH dehydrogenase FAD-containing subunit [Staphylococcus
massiliensis S46]
Length = 402
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/401 (23%), Positives = 169/401 (42%), Gaps = 71/401 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ L+ +D +V L+++++ L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTITKLQKLISAED--AEVTLINKNDYHYESTWLHEASAGTINY 60
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
E+ + N+ V F K V + N T G I ++D LV
Sbjct: 61 EELLYPIETAIDNSKVNFVKAEVT------KIDRNAKKVETDSG--------IYDFDILV 106
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK----------- 245
++LG + + G ++AF + + ++ R + E + N+ +EK
Sbjct: 107 VALGFISETFGIEGMKDYAFQIENVLTSRKLSRHI-EDKFANYASSKEKDENDLAILVGG 165
Query: 246 ----GIVQAINVETTI---C-PTGTPGNR------EAALKVLSARKVQLVLGYFVRCIRR 291
GI + T I C G ++ EAA K+L +LV Y V +
Sbjct: 166 AGFTGIEFLGELVTRIPELCNKYGVDQDKVRITCVEAAPKMLPMFSDELV-NYAVSFLED 224
Query: 292 VG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350
G EF+ A P +AA N +++++ + Q EA+ +W G +
Sbjct: 225 RGVEFKI--------ATPIVAA--NEKGFVVKVDD-----KEQQLEANTAVWAAGVR--- 266
Query: 351 PHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQ 407
+ L + RG+ + L +KG+ IF +GD SA + + RPLP TAQ
Sbjct: 267 ------GSELMEESFEGVKRGRIVNESDLTIKGYDDIFVIGDCSAFIPEGEERPLPTTAQ 320
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+A QQ + N+ +N P F + + G + LG +D
Sbjct: 321 IAMQQGEATAKNIANILNGNPTDKFEYIDRGTVCSLGAHDG 361
>gi|420247626|ref|ZP_14751024.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. BT03]
gi|398070753|gb|EJL62039.1| NADH dehydrogenase, FAD-containing subunit [Burkholderia sp. BT03]
Length = 448
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 99/382 (25%), Positives = 157/382 (41%), Gaps = 31/382 (8%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GGL A RL + V + ++ +VLLVD+ +KP+L+E SG +D +
Sbjct: 15 RIVIVGGGAGGLELATRLGNTVGRK-RRAEVLLVDRYPTHFWKPLLHEAASGHIDPAQHD 73
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+A +F + K L ++ M ++ + YD LVL++G
Sbjct: 74 ISYAVQAKRHSFRFVQGDFKALDSNERRITVASMVDEENREIV--PAQQIPYDTLVLAVG 131
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPT 260
+ V GA E A +E A + RKL R G + V I
Sbjct: 132 SVTNFFNVAGAEEEALRLENVEQAEQFRRKLLAACFRAGHEKNRTGGSEEPLVNVNIIGG 191
Query: 261 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD--K 318
G G E A V A V+ Y + + V + +P ++ + ++
Sbjct: 192 GATGV-ELAASVRDA--VEHFADYRFAALDPTKDICVRVIEGNDRVLPGLSPELSAAALS 248
Query: 319 YILEL--------------QPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNRLHD 362
++L L + A+ + +DL LW G P L H
Sbjct: 249 HLLRLNVQIMTKARVIEVRKDALLTAAGDVLPSDLTLWAAGVAGAPSLSHCP-------G 301
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
L LN GQ + TL PRI+A+GD +++ + G P TAQ A QQA + L A
Sbjct: 302 LRLNRNGQMLINTTLQSVADPRIYAIGDCASIDPNLGTGWPITAQAAHQQAVYLASALAA 361
Query: 423 AINDRPLLPFRFQNLGEMMILG 444
+ + + FR+++ G ++ G
Sbjct: 362 NLTLKNISEFRYRDGGTLVSFG 383
>gi|298244592|ref|ZP_06968398.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Ktedonobacter racemifer DSM 44963]
gi|297552073|gb|EFH85938.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Ktedonobacter racemifer DSM 44963]
Length = 413
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 154/380 (40%), Gaps = 49/380 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI +LG G GL LRL V + QV LVD+++ F +P L+E + + I
Sbjct: 7 RILVLGAGIAGLVFTLRLSGKVAHESV--QVTLVDEADTFTIRPRLHEFATNQ----RIF 60
Query: 141 PR-FADLLANTGVQFFKDRVKLLCPSDH--LGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
R F+ +L T +QFF+ RV L P DH + V H +EYD+L+
Sbjct: 61 SRPFSQILRKTHIQFFQGRVTSLDP-DHRRVAVLDQQQQEHE----------LEYDYLIY 109
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+LG+ VPG ++A+ S R S L ERL E G V
Sbjct: 110 ALGSMTDRHNVPGVEQYAYSLS-----ARGLFSASALR----ERLPEIGARGGRVVVCGG 160
Query: 258 CPTGTPGNREAALKVLSARKVQLVL-GYFVRCIRRVGEFEASVKQPESGAIPNIA---AD 313
TG + A + KV LV G R ++ SV + ++ D
Sbjct: 161 GATGIETATQVA-SIYPQIKVSLVTRGELARS------WDKSVADIFRRRLLSLGVEIVD 213
Query: 314 KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAET 373
+++ + A++G + DL +WT G V P R L +N R Q
Sbjct: 214 QSTVSAVRAQSVAMEG--GRELPCDLCIWTTG------FVVQPLAREAGLAVNERDQVLV 265
Query: 374 DETLCVKGHPRIFALGDSSALRDSSG-RPLPATAQVAFQQADFAGWNLWAAINDRPLLPF 432
+ L HP+I A+GD++ ++ G + +A A A L + + P
Sbjct: 266 NPFLHSISHPQILAIGDAALPVENPGVSHVRMSAFTASIMGAHAADCLSTELAGKLPKPL 325
Query: 433 RFQNLGEMMILGRNDAAVSP 452
F + + + LGRN A P
Sbjct: 326 SFAYVAQAVALGRNHALFLP 345
>gi|418736047|ref|ZP_13292450.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
gi|421096509|ref|ZP_15557212.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
borgpetersenii str. 200801926]
gi|410360660|gb|EKP11710.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
borgpetersenii str. 200801926]
gi|410748054|gb|EKR00955.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
gi|456886608|gb|EMF97748.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
borgpetersenii str. 200701203]
Length = 422
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 87/436 (19%), Positives = 173/436 (39%), Gaps = 58/436 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +K +I ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 ETRKRKIVVVGAGFGGLQVIKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYDW 194
+IA L+ +R+ + V G T + YD+
Sbjct: 58 PADIAIPIRSLVG--------ERLNVTV------VLGEATKVDLATKTVYYQNTSTNYDY 103
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG---IVQAI 251
L+LS GA+ ++ L+DA R+ KL +FE+ E G +V+A+
Sbjct: 104 LILSAGAKSSYFGNDHWEKYTIGLKNLKDALRIRHKL----LISFEKAELSGDPEVVKAL 159
Query: 252 NVETTICPTGTPGNREAALKVLSARKVQLVLGYF---------VRCI----RRVGEFEAS 298
+ G P E A + Q++ F + I R + F+ S
Sbjct: 160 --LNYVIIGGGPTGVELAGSIAELSH-QIIRDEFHTIDPALSKITLIEAAPRLLTTFDPS 216
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
+ + + + + + ++++ LE ++ V+W G + N
Sbjct: 217 LGEFTKKRLESRGVEVLTGTRVIDINERGVQLEEKMITTQTVIWAAGVQA---------N 267
Query: 359 RLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ + L+ G+ DE ++GHP +F +GD + RPLP + VA QQ +
Sbjct: 268 TIASTLGVTLDRGGRVIVDEFCNIEGHPEVFVIGDIAHYSKGLERPLPGVSPVAMQQGRY 327
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
+ + ++ FR+ + G M +GR DA + + G G A +L
Sbjct: 328 VAALIQGDLKNKKRKSFRYVDKGSMATIGRTDAVAQMGVLR---MRGLFGWFAWLFVHLF 384
Query: 476 RLPTDEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 385 YQVGFKNKVTILITWV 400
>gi|402302518|ref|ZP_10821629.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas sp.
FOBRC9]
gi|400380336|gb|EJP33155.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas sp.
FOBRC9]
Length = 426
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 101/442 (22%), Positives = 180/442 (40%), Gaps = 64/442 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++ + I+G GFGG+ A L + ++ LVD+ +F+P+LY++ + +
Sbjct: 3 EQKHVVIVGAGFGGVCLAKELAK------ENVRITLVDRHNYHLFQPLLYQVATAVLAVP 56
Query: 138 EIA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EIA P A N V+F L ++ GV+ VLL + + YD+LV
Sbjct: 57 EIAYPTRAFFKHNKNVEF------QLASAE--GVDQER------KVLLTNHGEIAYDYLV 102
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTL--------------EDACRVDRKLSELERRNFERL 242
L+ GA A+ ++P +L E A RV+ + +R+ +
Sbjct: 103 LAAGATTNFFGNESVAQNSYPMKSLQEAIALRSHLVHEFERAARVNETDDDERQRHLNFV 162
Query: 243 EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV--- 299
G I + I +E L +V ++L + +G V
Sbjct: 163 IVGGGATGIELAGAIIELIDVFKKE--YHSLDFSRVHVIL------LEAMGSVLPMVPPD 214
Query: 300 -KQPESGAIPNIAADKNSDKYILELQPAIKGLES-QIFEADLVLWTVGSKPLLPHVEPPN 357
+Q + D + + + + L+ + V+W G +
Sbjct: 215 LQQKTIDVLRKKGVDVRLNTAVTDYDGSTLSLKGGDVIPTKTVIWAAGVRA--------Q 266
Query: 358 NRLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ + D ++ G+ +E L V+G +FA+GD + + + RPLP A VA Q+A
Sbjct: 267 DFIKDCGGEVDRAGRIIVEENLLVRGSDCVFAIGDCANFQHGTERPLPTVAPVATQEALQ 326
Query: 416 AGWNLWAAINDRP---LLPFRFQNLGEMMILGRNDAAVS-PSFVEGVTL--DGPIGHSAR 469
G N+ A I+ + L F +Q+LG M + R +A ++ P V G+ + G I +A
Sbjct: 327 VGRNIMALIHGKKPEELGRFVYQDLGAMATIARGEAVMNGPIPVIGINMKASGFIAWTAW 386
Query: 470 KLAYLIRLPTDEHRLKVGVSWL 491
+L+RL V + W+
Sbjct: 387 MFVHLMRLAGKYANFTVMMKWI 408
>gi|170782775|ref|YP_001711109.1| dehydrogenase [Clavibacter michiganensis subsp. sepedonicus]
gi|169157345|emb|CAQ02532.1| putative dehydrogenase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 495
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/442 (21%), Positives = 180/442 (40%), Gaps = 65/442 (14%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P+I I+GGG+ G YTA +LES + + +V +VD ++P L E++SG ++
Sbjct: 2 PKILIVGGGYAGFYTAWKLESHLRSGEA--EVTMVDPLPYMTYQPFLPEVVSGSIE---- 55
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE--YDWLVL 197
PR A + ++ + DH + T+ G E YD +V+
Sbjct: 56 -PRHAVVSQRRHLRTTNVVTAKVTGIDH--------ASKTATITPPVGEPYEFTYDIIVV 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+ G+ + +PG A+ A T+E+A + ++ F + + A +
Sbjct: 107 TAGSVSRTFPIPGVADEAIGLKTIEEAVAIRDRI-------FANFDRAATLPAGPERERL 159
Query: 258 CPTGTPGNREAALKVLSARK---VQLVLGY--------FVRCIRRVGEFEASVKQPESGA 306
G A ++V + + LV Y I +G V S
Sbjct: 160 LTFVVVGGGFAGIEVFAEMRSIATDLVKKYPEIDFEDTHFHLIEAMGRIMPEVSLETSHW 219
Query: 307 IPNIAADKNSDKYI-LELQPAIKGL----ESQIFEADLVLWTVG--SKPLLPHVEPPNNR 359
+ A++ ++ ++ +L+ A+ G+ + FE+D+++WT G + P+L + + P
Sbjct: 220 VLKNLAERGANVHLDTQLKSAVGGVVELSTGESFESDVIVWTAGVMASPMLKNTDLPIEE 279
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA----TAQVAFQQADF 415
L + A G+ E D+ + + GD +A D +G + AQ A +Q
Sbjct: 280 RGRLRVRADGRVEGDDGIVADA----WGAGDVAATPDLTGGGVGGFCVPNAQHAVRQGKL 335
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSA------R 469
NL A++ + + +NLG + LG +G G IG +
Sbjct: 336 MAKNLTASLRGEGVTDYFHKNLGAVAGLG---------LYQGAFQSGKIGITGFPAWVMH 386
Query: 470 KLAYLIRLPTDEHRLKVGVSWL 491
+ + + +P+ E + +V W+
Sbjct: 387 RGYHGLAIPSFERKARVVTGWV 408
>gi|116329586|ref|YP_799305.1| NADH dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116332475|ref|YP_802192.1| NADH dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|116122479|gb|ABJ80372.1| NADH dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116127342|gb|ABJ77434.1| NADH dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
Length = 422
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 87/436 (19%), Positives = 173/436 (39%), Gaps = 58/436 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ +K +I ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 ETRKRKIVVVGAGFGGLQVIKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYDW 194
+IA L+ +R+ + V G T + YD+
Sbjct: 58 PADIAIPIRSLVG--------ERLNVTV------VLGEATKVDLATKTVYYQNTSTNYDY 103
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG---IVQAI 251
L+LS GA+ ++ L+DA R+ KL +FE+ E G +V+A+
Sbjct: 104 LILSAGAKSSYFGNDHWEKYTIGLKNLKDALRIRHKL----LISFEKAELSGDPEVVKAL 159
Query: 252 NVETTICPTGTPGNREAALKVLSARKVQLVLGYF---------VRCI----RRVGEFEAS 298
+ G P E A + Q++ F + I R + F+ S
Sbjct: 160 --LNYVIIGGGPTGVELAGSIAELSH-QIIRDEFHTIDPALSKITLIEAAPRLLTTFDPS 216
Query: 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN 358
+ + + + + + ++++ LE ++ V+W G + N
Sbjct: 217 LGEFTKKRLESRGVEVLTGTRVIDINERGVQLEEKMITTQTVIWAAGVQA---------N 267
Query: 359 RLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ + L+ G+ DE ++GHP +F +GD + RPLP + VA QQ +
Sbjct: 268 TIASTLGVTLDRGGRVIVDEFCNIEGHPEVFVIGDIANYSKGLERPLPGVSPVAMQQGRY 327
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
+ + ++ FR+ + G M +GR DA + + G G A +L
Sbjct: 328 VAALIQGDLKNKKRKSFRYVDKGSMATIGRTDAVAQMGVLR---MRGLFGWFAWLFVHLF 384
Query: 476 RLPTDEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 385 YQVGFKNKVTILITWV 400
>gi|186476585|ref|YP_001858055.1| NADH dehydrogenase [Burkholderia phymatum STM815]
gi|184193044|gb|ACC71009.1| NADH dehydrogenase [Burkholderia phymatum STM815]
Length = 450
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 136/349 (38%), Gaps = 22/349 (6%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLG 169
QV+LVD+S +KP+L+E SG++D ++A G F + ++ L + H
Sbjct: 46 QVVLVDRSPTHFWKPLLHEAASGQIDPATHQLQYAVQARRHGFAFEQGALQSLDRAQHRI 105
Query: 170 VNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
G VL +E+D LVL+LG+ V GAA+ A P ++ A R
Sbjct: 106 TISATRDEDGRDVL--PARHIEFDTLVLALGSVTNYFGVKGAADHALPLESVTHAESFRR 163
Query: 230 KLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR-- 287
KL + R G Q V I G G AA S R + + +
Sbjct: 164 KLLDACTRANHVRRVSGAQQVQPVSINIIGAGATGVELAAALRDSIRLMHRYSLFALDPE 223
Query: 288 ---CIRRVG-------EFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLESQIFE 336
CIR + V + + D + + E++ A+ + Q
Sbjct: 224 RDFCIRLIEGTDRVLPALSQRVSMRARRMLSGLGVDVLTTTRVTEVRADAVWTHDGQQLP 283
Query: 337 ADLVLWTVGSKPLLPHVEPPNNRLHD-LPLNARGQAETDETLCVKGHPRIFALGDSSALR 395
D+ +WT G PP R+ D + +N Q TL +FALGD +A
Sbjct: 284 NDIAIWTAGI------AGPPVLRVLDGIEVNRNAQVLVSRTLQTTTDENVFALGDCAACP 337
Query: 396 DSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
+ L AQVA QQA F L + L F +++ G ++ G
Sbjct: 338 SHADGFLAPRAQVAHQQATFLARALKCRVGGEALPEFTYRDAGTLVGFG 386
>gi|157960093|ref|YP_001500127.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Shewanella pealeana ATCC 700345]
gi|157845093|gb|ABV85592.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Shewanella pealeana ATCC 700345]
Length = 402
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 96/399 (24%), Positives = 162/399 (40%), Gaps = 56/399 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+GGG GL A L V D +V+LV+ +KP +E+ +G D+
Sbjct: 3 RIVIVGGGAAGLEIASMLGRSVNSQD---EVILVEGETHHYWKPRFHEIAAGTFDSDLDT 59
Query: 141 PRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ AN G ++ + + L V P T + YD+L++++
Sbjct: 60 ICYFSHGANNGYMHYQAWMTDVNRAAKQLVVRKPNGETD----------TLAYDYLIIAI 109
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFER-----------LEEKGIV 248
GA GA E T E A ++S L R R LE +
Sbjct: 110 GAISNDFATQGAKEHCLFLDTPEQARDSWHQISSLLRSGLSRTINIVGAGATGLELAAEL 169
Query: 249 QAINVETTICPTGTPGN---REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 305
++ E + P N EAA +VL V++ + + R+ +++ +V +
Sbjct: 170 AKVSEELSRNPYAAKLNINLIEAADRVLPNGPVKMS----EQALLRLEKYQVNVML--NT 223
Query: 306 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDL 363
I ++ AD+ + + Q+ AD+ W G ++ P+ + L
Sbjct: 224 RIASVEADRMTTS------------DGQVLNADVQFWAAG-------IKAPDWLKEIGGL 264
Query: 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423
N+ Q ++TL IFALGD +A+ + G +P AQ A + A NL A
Sbjct: 265 QSNSLNQLVVEQTLATTFDSSIFALGDCAAIPQADGSQVPPKAQAANRAAVHLAKNLVAH 324
Query: 424 INDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 462
+ +PL PF + + G ++ +G N A+S + + L G
Sbjct: 325 LKGKPLKPFVYNDGGMVVAIGHN-FAISTMMNDRLILKG 362
>gi|68535991|ref|YP_250696.1| NADH dehydrogenase [Corynebacterium jeikeium K411]
gi|68263590|emb|CAI37078.1| NADH dehydrogenase [Corynebacterium jeikeium K411]
Length = 471
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 98/430 (22%), Positives = 167/430 (38%), Gaps = 105/430 (24%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ + I+G GFGGL+ A + + ++ QV +VD++ +F+P+LY++ +G +
Sbjct: 6 NRHHVVIIGAGFGGLFAAKKFK------NENVQVTIVDRTNHHLFQPLLYQVATGILSEG 59
Query: 138 EIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
EIAP +LA+ V+ K V+ + ++ + GGT ++ YD L+
Sbjct: 60 EIAPSIRQILADQDNVRVVKGEVRNVDINEQ-----TVTADLGGT-----DAVLNYDSLI 109
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS-ELERRNF-------ERLEEKGIV 248
L+ GA AEFA +++DA + +++ ER +RL +V
Sbjct: 110 LAAGAGQSYFGNEQFAEFAPGMKSVDDALEIRARVTGAFERAEITTDPEARKRLLTFVVV 169
Query: 249 QA-------------------------INVETT-----------ICPTGTPGNREAALKV 272
A IN E T + P G R+AA +
Sbjct: 170 GAGPTGVELAGQLAEMSHRTLRDEFREINTEDTRILLIDGGPQVLAPFGKRLGRKAARR- 228
Query: 273 LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 332
L V +VL V + + G +K E +P+ A
Sbjct: 229 LEDLGVDIVLNSLVTDVSKEGVRYKDMKTEEEHFVPSYAK-------------------- 268
Query: 333 QIFEADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 390
+W+ G + PL HV + ++ G+ ++ L + H IF +GD
Sbjct: 269 --------IWSAGVAASPLGKHVAEQAG----IEVDRAGRVPVNDDLTLGEHRNIFIVGD 316
Query: 391 SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND----RPLLPFRFQNLGEMMILGRN 446
S LP AQVA Q +A + +N+ +PF + + G M I+ R
Sbjct: 317 M-----MSKDRLPGVAQVAMQGGQYAASTILDEVNNGTAPEGRVPFSYFDKGSMAIVSRF 371
Query: 447 DAAVSPSFVE 456
+A V + E
Sbjct: 372 NAVVKMNKAE 381
>gi|395775159|ref|ZP_10455674.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces acidiscabies 84-104]
Length = 460
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 102/441 (23%), Positives = 185/441 (41%), Gaps = 58/441 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
++PRI ++GGG+ GLY A R+ L + V +VD ++P L E +G +
Sbjct: 5 ERPRILVVGGGYVGLYAARRI--LKKMRYGEATVTVVDPRSYMTYQPFLPETAAGNISPR 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ +L + RV + + P L+ + +D+LV+
Sbjct: 63 HVVVPLRRVLPKA--EVLTGRVTTIDQDRKVATIAP---------LVGEAYELPFDYLVI 111
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEE--KGIVQAINVE 254
+LGA + +PG AE +E+A + + L +L++ + EE + + + +
Sbjct: 112 ALGAVSRTFPIPGLAEQGIGMKGVEEAIGLRNHVLEQLDKADSTTDEEIRRKALTFVFIG 171
Query: 255 TTICPTGTPGN-----REAA--LKVLSARKVQLVLGYFVRCIR-----RVGEFEASVKQP 302
T G R+AA K +S ++ VL I ++G++ +
Sbjct: 172 GGFAGAETIGEVEDLARDAAKYYKTVSREDMRFVLVDAADKILPEVGPKLGQY--GKEHL 229
Query: 303 ESGAIP---NIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
ES + + + D D +++ GLE +++ ++WT G KP P +R
Sbjct: 230 ESRGVEIYLSTSMDSCVDGHVV----LKNGLE---VDSNTIVWTAGVKP-----NPVLSR 277
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP-------LPATAQVAFQQ 412
+ LPL RG +T ETL V+G I+A GD++ + D + R P AQ A +Q
Sbjct: 278 -YGLPLGPRGHVDTSETLQVQGTDYIWAAGDNAQVPDVAARKAGVENAWCPPNAQHALRQ 336
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG---VTLDGPIGHSAR 469
A G N+ + + P + N G + LG + V G + + G +
Sbjct: 337 AKVLGDNVVSGMRGFPQKTYAHSNKGAVAGLGLHKGVA--MIVMGKMKIKVRGRLAWYMH 394
Query: 470 KLAYLIRLPTDEHRLKVGVSW 490
+ + + +PT +++V W
Sbjct: 395 RGYHGMAMPTWNRKIRVFADW 415
>gi|111017147|ref|YP_700119.1| NADH dehydrogenase [Rhodococcus jostii RHA1]
gi|110816677|gb|ABG91961.1| NADH dehydrogenase [Rhodococcus jostii RHA1]
Length = 440
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 104/435 (23%), Positives = 181/435 (41%), Gaps = 59/435 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI ++G GF G A L + D + + L+ + ++ P+L E+ G +DA +
Sbjct: 11 RIVVVGSGFAGFECARALTRRLRGTDTR--ITLISAHDYMLYTPLLPEVAGGILDARFVT 68
Query: 141 PRFADLLANTGVQFFK---DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
A+ L N V+ K D V + H+ C HG +E V +D +VL
Sbjct: 69 VPLAEALPN--VELVKGNVDSVDFEARTVHV-----TDCEHG----VED---VAWDRVVL 114
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETT 256
+ G+ +L +PG AE A T +A D+ L+++E ER + + A
Sbjct: 115 TPGSVTRLFDIPGLAEHARGLKTPAEALYFRDQLLTQIELA--ERDTDPSVADARRTVVV 172
Query: 257 ICPT--GTP--------GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGA 306
+ + GT + AA + L K++ +L + V + G
Sbjct: 173 VGASYAGTELTAQLRALADEAAARRNLDPAKIRFLL------LDAADTVMPEVGEKLGGK 226
Query: 307 IPNIAADKNSD----KYILELQPAIKGLE-SQIFEADLVLWTVG--SKPLLPHVEPPNNR 359
+ ++ + D + EL P L+ + V W G + PL+ + P +
Sbjct: 227 VLDVLRSRGIDVRLETTLTELGPEHVTLDDGTVIPTRTVAWVTGVTASPLIDTLGLPTEK 286
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAG 417
G+ L V GHP +FA GD++A+ D +SG P TAQ A +Q
Sbjct: 287 ---------GRLTVRPDLSVDGHPDVFAGGDAAAVPDPRNSGSITPPTAQHAVRQGQTLA 337
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
N+ A++ P+ +++G ++ LG A +P G+ L G + + +L +
Sbjct: 338 RNVAASLGVGDPKPYGHRDMGLVVDLGPGFAVANPL---GIQLSGFLAKVVTRAYHLYAM 394
Query: 478 PTDEHRLKVGVSWLT 492
P +R V +++LT
Sbjct: 395 PNTANRWAVALAYLT 409
>gi|407795473|ref|ZP_11142432.1| NADH dehydrogenase [Salimicrobium sp. MJ3]
gi|407020358|gb|EKE33071.1| NADH dehydrogenase [Salimicrobium sp. MJ3]
Length = 406
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 99/415 (23%), Positives = 158/415 (38%), Gaps = 100/415 (24%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+P I ILG G+GG+ TA +L+ V D + LV+ L+E +G +
Sbjct: 2 NRPNIVILGAGYGGMMTASKLQKKVSAD--SANMTLVNMHSYHYQSTWLHENAAGTLHHD 59
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+++ + F +D V + P + V L +G I YD+LV+
Sbjct: 60 RTRMEVDNVIDTNKINFVQDTVTGIDPDNK-------------KVSLLNGEI-SYDYLVI 105
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV---------------DRK------------ 230
LG E + G E AF S++ A + D+K
Sbjct: 106 GLGFEAATFGIKGLLENAFTISSINKARLIRQHIEYNFAKYNNEKDKKQERLNLVVGGAG 165
Query: 231 ------LSELERRNFERLEEKGI----VQAINVETTICPTGTPGNR----EAALKVLSAR 276
+ EL R E +E + V+ INVE PT PG E A+ L AR
Sbjct: 166 FTGIEFVGELANRVPELCKEYDVPRENVRIINVEA--APTALPGFDPELVEYAMNSLEAR 223
Query: 277 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 336
V+ LG ++ + +DK + E +G E +
Sbjct: 224 GVEFKLGAMIKEV-------------------------TADKLVYE-----QGDEIEEIP 253
Query: 337 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSS-AL 394
+ V+W G + N+ + + + RG+ E L G+ +F +GD + +
Sbjct: 254 TNTVVWAAGVRG--------NSLVEEAGFESNRGRTPVREDLRPNGYDDVFIVGDCALIM 305
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAIN-DRPLLPFRFQNLGEMMILGRNDA 448
+ + RP P TAQ+A Q+A+ NL + + L PF G + LG DA
Sbjct: 306 NEETERPYPPTAQIAIQEAEHTAGNLKRIVEGNHNLEPFEPNIQGTVASLGNKDA 360
>gi|398345855|ref|ZP_10530558.1| NADH dehydrogenase [Leptospira broomii str. 5399]
Length = 434
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/427 (20%), Positives = 172/427 (40%), Gaps = 42/427 (9%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K K ++ ++G GFGGL +L D+ + ++D+ +F+P+LY++ + +
Sbjct: 6 KSKKKVVVIGAGFGGLQAIKKLSR-----DEDLDITVIDKKNHHLFQPLLYQVATAVLSP 60
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+IA L+ + K+ V + +LG + + YD+L+
Sbjct: 61 ADIAIPTRSLVGD------KENVTV-----YLGEVDKVDLKERKVYFQDHS--ENYDFLI 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS-ELERRNFERLEEKGIVQAINVET 255
L+ GA ++ L+DA + KL ER E E K I +++
Sbjct: 108 LAAGARTSYFGNDHWKKYTTGLKNLKDALEIRTKLLLSFERAELE--ENKEIAKSLLNYV 165
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIA--AD 313
I T ++ LS V+ + ++ EAS + + PN++ A
Sbjct: 166 IIGGGPTGVELAGSIAELSHEIVRNEFHTIDPALSKITLIEASPRLLMAFH-PNLSEFAK 224
Query: 314 KNSDKYILELQPAIK---------GLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 364
+K +E+ K L+ + ++W G + ++ +P
Sbjct: 225 TRLEKRGVEVLVGTKVINIDEEGVHLDGCTIRSSNIIWAAGVQA------NAISQALGVP 278
Query: 365 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 424
L+ G+ DE ++GHP +F +GD + + RPLP + VA QQ +A ++ +
Sbjct: 279 LDRTGRVMVDEYCNIEGHPEVFVIGDIANFTKNLERPLPGVSPVAMQQGRYAASLIFGDL 338
Query: 425 NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 484
+ F++ + G M +GR DA L G G +A +L ++++
Sbjct: 339 KGKKRSIFKYVDKGSMATIGRQDAVAQVGLWR---LKGFFGWAAWLFVHLFYQVGFKNKV 395
Query: 485 KVGVSWL 491
+ ++W
Sbjct: 396 SILITWF 402
>gi|289579988|ref|YP_003478454.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Natrialba magadii ATCC 43099]
gi|448281226|ref|ZP_21472533.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Natrialba magadii ATCC 43099]
gi|289529541|gb|ADD03892.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Natrialba magadii ATCC 43099]
gi|445579156|gb|ELY33552.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Natrialba magadii ATCC 43099]
Length = 389
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 97/405 (23%), Positives = 173/405 (42%), Gaps = 74/405 (18%)
Query: 81 RICILGGGFGGLYTALRLES-------LVWQDDKKPQVLLVDQSERFVFKPMLYELLSGE 133
+ +LG G+ G +L+S L W D ++L ++ R V P + ++
Sbjct: 4 NVVVLGAGYAGTGAITKLQSELGGNARLTWIADVDYHLVL-HEAHRVVRDPDVRSDITFP 62
Query: 134 VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
VD +A+ +F +D V L + + V L G V+YD
Sbjct: 63 VDQ----------IADPSTRFIQDEVVGLDVDEQV-------------VELAEGDDVDYD 99
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINV 253
+++++LG++ +PG E + +L+DA + ++S+ ++ R E +V
Sbjct: 100 YVLVALGSQTAYYGIPGLEEHSLTLKSLDDAMEIHDEISQA-SQDATRGEPAQVVVGGAG 158
Query: 254 ETTICPTGTPG----NREAALKVLSARKVQLVLGYFVRCIRRV--GEFEASVKQPESGAI 307
+ I G N A +++ + V + + G + ++Q +
Sbjct: 159 LSGIQTAGEIAEFRDNHRAPIEI-----------HLVEALDEIFPGN-DPEIQQALRDLL 206
Query: 308 PNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVG--SKPLL--PHVEPPNNRLHD 362
N ++D I E + I+ E E D+++WT G + L +E +NR+
Sbjct: 207 ENAGVHIHTDDPITEAKADVIEFDEGDPLEHDVLIWTGGITGRDALDDADLEKEHNRV-- 264
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
N +T E +FA+GDS AL D RP P TAQ A+Q A+ G N+
Sbjct: 265 ---NVEANFQTTEE-------NVFAIGDS-ALIDQGDRPAPPTAQAAWQAAEVVGENISR 313
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDAA--VSPSFVEGVTLDGPIG 465
AI +RPL + ++ G ++ +G A V P+F G++L P+G
Sbjct: 314 AIENRPLKTWEHEDRGTVVSVGDKAVAHEVKPAF--GLSL--PVG 354
>gi|421128816|ref|ZP_15589027.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira kirschneri
str. 2008720114]
gi|410359928|gb|EKP06968.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira kirschneri
str. 2008720114]
Length = 422
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/432 (19%), Positives = 176/432 (40%), Gaps = 50/432 (11%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ + ++ ++G GFGGL +L Q+D + ++D+ +F+P+LY++ + +
Sbjct: 3 ESNQKKVVVIGAGFGGLQAVKQLS----QNDN-LDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + K+ +L + + P T + YD+L
Sbjct: 58 PADIAIPTRSLVGES-----KNVTVVLGEATKID---PKTKT-----VYYQNTSTNYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI-NVE 254
+LS GA+ ++ L+DA ++ KL +FE+ E G + + ++
Sbjct: 105 ILSAGAKSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKSLL 160
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVR---CIRRVGEFEASVK-----QPESGA 306
+ G P E A + Q++ F + + ++ EAS + P G
Sbjct: 161 NYVIIGGGPTGVELAGSIAELSH-QIIRDEFHKIDPALSKITLIEASPRLLMTFDPSLGE 219
Query: 307 IPNIAADKN-----SDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
+K + ++++ LE ++ V+W G + N+
Sbjct: 220 FTKKRLEKRGVEVLTGTRVIDINEQGVQLEGKMIPTQTVIWAAGVQA--------NSIAS 271
Query: 362 DL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
L L+ G+ DE ++GH +F +GD ++ RPLP + VA QQ +
Sbjct: 272 TLGTTLDRGGRVIVDEFCNIEGHSEVFVIGDIASYSKGLERPLPGVSPVAMQQGRYVASL 331
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ + ++ PF + + G M +GR DA ++ + G G A +L
Sbjct: 332 IQNDLKNKKRKPFHYIDKGSMATIGRTDAVAQVGILK---MKGLFGWLAWLFVHLFYQVG 388
Query: 480 DEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 389 FKNKITILITWV 400
>gi|291288647|ref|YP_003505463.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Denitrovibrio acetiphilus DSM 12809]
gi|290885807|gb|ADD69507.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Denitrovibrio acetiphilus DSM 12809]
Length = 431
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 91/414 (21%), Positives = 172/414 (41%), Gaps = 61/414 (14%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K +V L+D++ +F PML E++SG V I ++ V+F +D+V
Sbjct: 27 KHVEVTLIDKNNYSLFTPMLPEVVSGNVKPDNIVLPLREICVKNSVRFVRDKV------- 79
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ V+ C + +E+ L +YD+L+++ G++ A E A F ++ DA
Sbjct: 80 -ISVDKDNNC----VICIENEL--KYDYLIVATGSKTNFRGNESAIENALQFKSITDAI- 131
Query: 227 VDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPG----NREAALKVLSARKVQL-- 280
+L+ + LE+ + + + + ++ G E A ++ K ++
Sbjct: 132 ------DLKYLIIDHLEKASSMTSSDAKKSLLSFSVIGGGITGVELACEMNDFIKAKIKR 185
Query: 281 -------------VLGYFVRCIRRVGEFEASVKQP---ESGAIPNIAADKNSDKYILELQ 324
+L Y+ + + E +A Q ESG NI + N + E
Sbjct: 186 EYSNIGSEEYSINILEYYKTILPSIDESQAQKAQEAVVESGI--NIINNANVQEISKESI 243
Query: 325 PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAET--DETLCVKG- 381
+ E +I + + +WT G + L + N G + L +G
Sbjct: 244 RFEQNGEQKILNSSITVWTAGV--------MGRDYLETISTNQTGDKRVFIEHELTPQGI 295
Query: 382 -HPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEM 440
IF +GDS A + + LP A +A QQ A N+ I+ +P F + + G +
Sbjct: 296 TDSNIFVIGDSCAYQYNE-HILPPVAPLAMQQGIMAVINIVRNIDGKPKKDFNYFHFGYL 354
Query: 441 MILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKS 494
+ LG+N++ V+ + G+ L G + K+ YL ++ + ++ V W+ S
Sbjct: 355 VSLGKNNSVVN---LFGLKLRGRFAYYVWKMLYLYKVGMFKKQIGVFFDWIMTS 405
>gi|261494980|ref|ZP_05991449.1| NADH dehydrogenase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261309389|gb|EEY10623.1| NADH dehydrogenase [Mannheimia haemolytica serotype A2 str. OVINE]
Length = 426
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 146/355 (41%), Gaps = 44/355 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
+K +V+L+D++ ++KP+L+E+ +G +D A + N +F + + +
Sbjct: 28 QKAKVVLIDRNATHLWKPLLHEVATGTIDEGTDALSYRAHAKNHSFEFQQGTLVAVDREK 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ ++ E + YD LV+++G++ G AE E A
Sbjct: 88 KTVSLAPIYNDQNQLLVKERH--ISYDKLVIAIGSKSNDFGTKGVAENCIFLDGSEQAKD 145
Query: 227 VDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV----- 281
+++ EL R F E K +V+ I G G LSA +V
Sbjct: 146 FQKRMMELFLR-FSHSENK------DVKIAIVGGGATGIE------LSAELYHVVKNLNS 192
Query: 282 --LGYFVRCIRRVGEFEASVKQ----PESGAIPNIAADKNSD------KYILELQPAIKG 329
G R +V EA + PE ++ K + I E +P G
Sbjct: 193 YGFGKLNRASLKVTLIEAGPRLIPALPEKVSVSAFHELKKAGVSVRLGTMITEARP--DG 250
Query: 330 LESQI---FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIF 386
L +++ EAD+++W G K P R N Q E +TL +F
Sbjct: 251 LMTRLGEKIEADIMVWAAGVKA------PEITREFGFETNRLNQIEIKDTLQTTVDDSVF 304
Query: 387 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 441
+GD ++L G+P+P AQ A Q A G N+ A I+ + + PFRF++ G ++
Sbjct: 305 VIGDCASL-IQDGKPIPPRAQAAHQMATRCGKNIVALIDGKEMKPFRFKDKGSLL 358
>gi|445496480|ref|ZP_21463335.1| NADH dehydrogenase Ndh [Janthinobacterium sp. HH01]
gi|444786475|gb|ELX08023.1| NADH dehydrogenase Ndh [Janthinobacterium sp. HH01]
Length = 436
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 146/378 (38%), Gaps = 71/378 (18%)
Query: 109 PQ-VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
PQ V LVD ++KP L+E+ +G +D + + L + G F
Sbjct: 27 PQAVTLVDSRLFHIWKPSLHEVAAGTLDVHQEGLSYQMLAHDNGFTF------------- 73
Query: 168 LGVNGPMACTHGGTVLLESGLI------------------VEYDWLVLSLGAEPKLDVVP 209
V GPM L G I + Y+ LVL++G+ VP
Sbjct: 74 --VYGPMLALDAAQRQLTVGAIYSGASDQAAREAVLPERRIGYESLVLAVGSTSNYFGVP 131
Query: 210 GAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAA 269
GAAE + EDA R +L+ L+ L++ +A V+ I G G E A
Sbjct: 132 GAAEHTISLNATEDAERF--RLTLLKLLTQAELQKSTRPEA-GVDIVIIGGGATGV-ELA 187
Query: 270 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD--KNSDKYILEL--QP 325
++ A V G+ R + E V+ P I A + LEL Q
Sbjct: 188 AELREASGVYAAYGF------RQLKAERDVRITLLEGAPRILAPLPEKVSAAALELLHQR 241
Query: 326 AIKGLESQ---------------IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQ 370
A+K + ++ A +V+W G K P LP GQ
Sbjct: 242 AVKVVTDTRVTAIGADAVTAGDTVYPAQIVVWAAGIK------APDFLSQLGLPTVKSGQ 295
Query: 371 AETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP-- 428
+ D L VKGH I+ALGD +A G+ +P AQ A QQAD+ + RP
Sbjct: 296 LDVDARLAVKGHADIYALGDCAACAGPDGKLVPPRAQAAHQQADYLAAHFLRRRQGRPPQ 355
Query: 429 LLPFRFQNLGEMMILGRN 446
P+ +++ G ++ G+
Sbjct: 356 EQPYVYRDYGSLVSFGQT 373
>gi|363423735|ref|ZP_09311795.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Rhodococcus pyridinivorans AK37]
gi|359731462|gb|EHK80512.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Rhodococcus pyridinivorans AK37]
Length = 394
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 152/383 (39%), Gaps = 73/383 (19%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PR+ ++GGG+ G A R+ +K V +++ FV + L++ G A
Sbjct: 5 RPRVVVIGGGYAGTVAANRMS-------RKAAVTVINPRPHFVQRTRLHQFAVGNHHA-- 55
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ + LLA GV D V + P TV L SG V+YD+LV +
Sbjct: 56 -SGDYRTLLAK-GVDLLVDTVTRIEPGTR-------------TVHLASGGTVDYDYLVYA 100
Query: 199 LGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
+G+ + VPG EFAFP + E A R+ LS LE + +V T+
Sbjct: 101 VGSTATRRSTVPGVEEFAFPVAEFEYAERLQYALSN--------LEPEAVV-------TV 145
Query: 258 CPTGTPGNREAALKVLSARKVQLV----LGYFVRCIRRVGEFEA----SVKQPESGAIPN 309
G G A R+V+LV +G + R +E V+ E+ +
Sbjct: 146 VGAGLTGLETAGELAEQGRRVRLVCSSTIGPMLSEKARAATYERLADLRVEIIENARVTR 205
Query: 310 IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
+ D + L+ + + E+ + +WT G P R + G
Sbjct: 206 V----GPDGFTLD--------DDTVLESAITVWTAGFGV------PELARTSGFRTDELG 247
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI-NDRP 428
+ TDETL R+ A GD +A SG P+ Q A A + + I + P
Sbjct: 248 RILTDETLTSIDDDRVIAAGDCAA---PSGEPVRMACQSALPTGLAAADTVLSRIAGEEP 304
Query: 429 L-LPFRFQNLGEMMILGRNDAAV 450
L F F +G + LGR+ V
Sbjct: 305 ADLDFGFNGVG--VSLGRHVGVV 325
>gi|375143577|ref|YP_005006018.1| NADH dehydrogenase (ubiquinone) [Niastella koreensis GR20-10]
gi|361057623|gb|AEV96614.1| NADH dehydrogenase (ubiquinone) [Niastella koreensis GR20-10]
Length = 450
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/440 (21%), Positives = 171/440 (38%), Gaps = 59/440 (13%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P K PR+ I+GGGF G A +L QV+L+D++ + F+P+LY++ + +
Sbjct: 15 PVSKNPRVVIVGGGFAGTELAKKLSK------ASLQVVLIDKNNYYTFQPLLYQVATAGL 68
Query: 135 DAWEIAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESGL-IVEY 192
+A I + +L FF+ V+ + P + ++E+ + +V Y
Sbjct: 69 NAPSIVYPYRKILEKGDDTFFRLAEVESVYPVER---------------IIETSIGLVHY 113
Query: 193 DWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAIN 252
D+LV++ GA + A ++EDA + + NFE+ + G + +N
Sbjct: 114 DYLVIATGATTNFYGNKQIEQHAIAMKSVEDALMLRNTII----CNFEKALQIGDEEQLN 169
Query: 253 -VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIA 311
+ + G P E A + RK F + + + + + +SG
Sbjct: 170 SLMDFVIVGGGPTGVEIAGALSELRK-----HVFPKDYKELDFIKMDIHLIQSGDHILKG 224
Query: 312 ADKNSDKYILE----------LQPAIKGLESQIFEAD--------LVLWTVGSKPLLPHV 353
+ + L+ L +K + D ++W G
Sbjct: 225 MSHEASTHALKFLEKAGVQVWLNRRVKSFDGYTVVLDNGEKLITRTLIWAAGVTG----- 279
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS-GRPLPATAQVAFQQ 412
P L + + + + DE V G+ IFALGD + + + P AQ A QQ
Sbjct: 280 -APIKGLSAECITSGNRLKVDEYNRVAGYENIFALGDIAEMATAELPEGYPMLAQPAIQQ 338
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV-EGVTLDGPIGHSARKL 471
G NL + +PL F + + G + +GRN A F + G
Sbjct: 339 GRLLGDNLPKLVAGKPLKKFVYTDKGSLATIGRNKAVADVKFFNKEFKTQGLFAWFIWLF 398
Query: 472 AYLIRLPTDEHRLKVGVSWL 491
+L + ++RL V ++W+
Sbjct: 399 VHLFSIIGFKNRLLVFINWI 418
>gi|407362556|ref|ZP_11109088.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Pseudomonas mandelii JR-1]
Length = 400
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 142/366 (38%), Gaps = 65/366 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAW 137
K I ++G GFGG+++AL L+ + D+K Q+ ++ +P YE D
Sbjct: 2 KQNILVIGAGFGGVWSALSAARLLDKHDRKDVQITVLAPQAELRIRPRFYE-----ADVH 56
Query: 138 EIAPRFADLLANTGVQFFK---DRV----KLLCPSDHLGVNGPMACTHGGTVLLESGLIV 190
+ DL GV+F K D + K + SD G G ++
Sbjct: 57 TMMAPLGDLFDAVGVKFVKGSADHIDVENKQVAYSDVFGTQGTLS--------------- 101
Query: 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQA 250
YD LVL+ G+ + G E AF +E+A R++ + L+ + +V
Sbjct: 102 -YDRLVLAAGSRVIRPALEGMIEHAFDVDQIEEASRLEAHIKSLKNLPYSTARNTVVVAG 160
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
T P AAL ++ +V +V R + AS+ G P+I
Sbjct: 161 GGFTGIETATEMPARLRAALGSDASIRVIVV--------DRGPQIAASMGD---GIRPSI 209
Query: 311 AADKNSDKYILELQPAIKGLES--------QIFEADLVLWTVG--SKPLLPHV---EPPN 357
N L ++ +++ Q E++ V+WTVG + PL V P
Sbjct: 210 IEASNHLGIEWVLNSSVASVDAGGVTLADGQRIESNTVIWTVGFRASPLTEQVVGTRDPQ 269
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATAQVAFQQADFA 416
RLH D L V GH +FA GD + A D+ G + Q A +A
Sbjct: 270 GRLH-----------VDGNLKVLGHADVFAAGDVAYAATDTLGNFAGMSCQHAISLGRYA 318
Query: 417 GWNLWA 422
G N+ A
Sbjct: 319 GNNVAA 324
>gi|339506083|ref|YP_004716752.1| NADH dehydrogenase protein [Sinorhizobium fredii GR64]
gi|338760190|gb|AEI89615.1| NADH dehydrogenase protein [Sinorhizobium fredii GR64]
Length = 420
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 99/427 (23%), Positives = 170/427 (39%), Gaps = 49/427 (11%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQ--VLLVDQSERFVFKPMLYELLSGEVDAWE 138
R+ I+GGGF GL A +D K P + +VD+ +F+P+LY++ + + E
Sbjct: 4 RVVIVGGGFAGLQLA--------KDLKCPNLSITIVDRRNHHLFQPLLYQVATTVLATSE 55
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA + KD LL + +GV+ V L+ G + YD LVL+
Sbjct: 56 IAWPIRAVFRGR-----KDVTTLL--GEVVGVD-----VEKRLVSLKGGHAIPYDTLVLA 103
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
GA FA LEDA + R+L FE+ E + QA T
Sbjct: 104 TGARHAYFGRDEWEPFAPGLKALEDATTIRRRL----LLAFEKAELETDPQARAAMLTFS 159
Query: 259 PTGT-PGNREAALKVLSARKVQLVLGY------FVRCI------RRVGEFEASVKQPESG 305
G P E A + + LV + R + R + F ++ Q
Sbjct: 160 IIGAGPTGVEMAGIIAELAQRTLVEEFRNIDTTLARILLVEAGPRVLPVFHEALSQYAER 219
Query: 306 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 365
++ ++ + + + + + + + + V+W G + V
Sbjct: 220 SLASMGVEVRTGRPVTDCTEEGISIGDEFVPSRTVIWAAGVQASKAAVWVGAE------T 273
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425
+ G+A L + HP IF +GD+++++ G P+P A A QQ + + A +
Sbjct: 274 DRAGRAIVQPDLTISEHPEIFVVGDTASVKTGEGMPVPGIAPAAKQQGKYVAQVIKARLK 333
Query: 426 DRPL-LPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRL 484
R PF++++LG + +G + A + + L G I A++ L R+
Sbjct: 334 QRSAPPPFKYRHLGNLATIGPSSAVIDFGRLR---LKGSIAWWIWGFAHIYFLIGTRSRM 390
Query: 485 KVGVSWL 491
V +SWL
Sbjct: 391 AVALSWL 397
>gi|241205463|ref|YP_002976559.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240859353|gb|ACS57020.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 421
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 99/413 (23%), Positives = 166/413 (40%), Gaps = 73/413 (17%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
++ LVD+ +F+P+LY+ +LS AW I +AD + V +L
Sbjct: 28 KITLVDRRNHHLFQPLLYQVATTILSTSEIAWPIRRLYAD----------RPDVTVLL-G 76
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEFA 215
+ GV+ + TV L +G+ + YD LVL+ GA EP V PG
Sbjct: 77 EVTGVD-----SGAKTVSLRNGMTLSYDTLVLATGATHAYFGHDEWEP---VAPG----- 123
Query: 216 FPFSTLEDACRVDRKLSELERRNFER--LEEKGIVQAINVETTICPTGTPGNREAAL--- 270
TLEDA + R+L FE+ +E V+ + TI G G A +
Sbjct: 124 --LKTLEDATTIRRRL----LLAFEKAEMESDPAVRDALLTFTIVGAGPTGVELAGIIAE 177
Query: 271 ----------KVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIPNIAADKNSDKY 319
+ + RK ++VL V RV F + A+ + + + K
Sbjct: 178 LAHFTLPKEFRNIDTRKTRVVL---VEAGPRVLPTFAEELSAYAQKALEKLGVEIHLGKP 234
Query: 320 ILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCV 379
+ E + + ++W G P R + + G+ ++ L
Sbjct: 235 VTECNADGVKIGETFVASRTIVWAAGV------TASPAARWLGVAADRAGRVVVEKDLSA 288
Query: 380 KGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLG 438
G P +F +GD++++ G+P+P A A QQ + + A I+ +P PFR+ + G
Sbjct: 289 PGLPEVFVVGDTASVMREDGKPVPGIAPAAKQQGGYVAKVIRARISGKPTPAPFRYWHQG 348
Query: 439 EMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+ +G++ A + ++ L G I LA++ L R V SWL
Sbjct: 349 SLATIGKSAAIIDFGRIK---LKGWIAWWIWGLAHIYFLIGTRSRFSVAWSWL 398
>gi|376254296|ref|YP_005142755.1| NADH dehydrogenase [Corynebacterium diphtheriae PW8]
gi|372117380|gb|AEX69850.1| NADH dehydrogenase [Corynebacterium diphtheriae PW8]
Length = 454
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 113/452 (25%), Positives = 181/452 (40%), Gaps = 79/452 (17%)
Query: 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
P+ + + ++G GFGGL+ L+ D + L+D++ +F+P+LY++ +G +
Sbjct: 8 PEGGRHHVVVIGSGFGGLFAVQNLK------DADVDITLIDRTNHHLFQPLLYQVATGIL 61
Query: 135 DAWEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
+ EIAP+ +LA V K V + V L + +EYD
Sbjct: 62 SSGEIAPQTRQVLAQQNNVHVLKAEVTDIDTESKTVVAD----------LDDYSKTIEYD 111
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELER-------RNFERLEEK 245
L+++ GA AEFA T++DA + R + ER + ERL
Sbjct: 112 SLIVAAGAGQSYFGNDHFAEFAPGMKTIDDALELRARIIGAFERAEMCEDPKERERLLTF 171
Query: 246 GIVQAINVETTICPTGT--PGN-REAALKVLSARKVQL---------------VLGYFVR 287
IV A PTG G E A + LS Q VL F +
Sbjct: 172 VIVGA-------GPTGVELAGQLAEMAHRTLSGEYTQFTPSNAKIILLDGAPQVLPPFGK 224
Query: 288 CIRRVG--EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES--QIFEADLVLWT 343
+ R E E + AI D+NS Y + ++ ++S +I+ A +
Sbjct: 225 RLGRTAQRELEKIGVTVKLNAIVT-GVDENSVTYKSTVDDSLHTIDSFCKIWSAGVAASP 283
Query: 344 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 403
+G K + + +R+ +P+N E L V +F +GD +L LP
Sbjct: 284 LG-KLVAEQLGVEVDRVGRVPVN--------EDLSVGDDKNVFVIGDMMSL-----NRLP 329
Query: 404 ATAQVAFQQADFAGWNLWAAI-----NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGV 458
AQVA Q ++ + A + ++RP F + + G M + R +A V VE
Sbjct: 330 GVAQVAIQGGEYVAEQIAAEVEGRSSSERP--AFEYYDKGSMATVSRFNAVVKLGKVE-- 385
Query: 459 TLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
+ G IG L YL+ L +R SW
Sbjct: 386 -VTGFIGWVMWLLVYLMFLVGFRNRATAAFSW 416
>gi|295835100|ref|ZP_06822033.1| NADH dehydrogenase [Streptomyces sp. SPB74]
gi|295825301|gb|EDY44922.2| NADH dehydrogenase [Streptomyces sp. SPB74]
Length = 453
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 111/436 (25%), Positives = 188/436 (43%), Gaps = 56/436 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI ++G GF G+ RLE + + ++ LV ++ P+L ++ SG +
Sbjct: 3 RPRILVVGAGFAGVECVRRLERRI--PPGRAEITLVAPYSYQLYLPLLPQVASGVLTPQS 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE--YDWLV 196
+A + K R ++L P +GV+ V +G IV+ YD LV
Sbjct: 61 VAVSLR--------RSRKHRTRIL-PGGAIGVDPEKKIC---VVQKVTGEIVDEPYDHLV 108
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVET 255
L+ G+ + +PG E A TL +A + D +++L+ + E + +A ++
Sbjct: 109 LTPGSITRTFDIPGLTENARGMKTLAEAAYIRDHVIAQLDLADASEDETE---RASRLQF 165
Query: 256 TICPTGTPGNREAA-LKVLSARKVQLVLGYFVRCIRRVGEFE----ASVKQPESG-AIPN 309
+ G G AA L+ L+ V+ ++ R + ++ A PE G +
Sbjct: 166 VVVGGGYAGTETAACLQRLTTSAVK----HYPRLDPSLIKWHLIDIAPKLMPELGDELGK 221
Query: 310 IAADKNSDKYI---LELQPAIKGLESQIFE------ADLVLWTVG--SKPLLPHVEPPNN 358
A D S++ I L + A G E F ++WT G + PL+ +E
Sbjct: 222 AALDVLSERGIEVSLGVSIAEAGPEKVTFTDGRTLPCRTLIWTAGVAASPLMATLERET- 280
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD---SSGRPLPATAQVAFQQADF 415
RG+ L V G +FALGD++A+ D G P TAQ A +Q
Sbjct: 281 --------VRGRLAVTPELTVPGLDGVFALGDAAAVPDLTKGEGAICPPTAQHAMRQGRI 332
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
A N+ A I +PL P+ ++LG ++ LG +DA P G+ L G + + +
Sbjct: 333 AADNVLATILHQPLRPYVHKDLGLVVDLGGHDAVSRPL---GINLSGVPAQAVARGYHWS 389
Query: 476 RLPTDEHRLKVGVSWL 491
L T + +V +W+
Sbjct: 390 ALRTGVAKTRVLTNWM 405
>gi|33152018|ref|NP_873371.1| NADH dehydrogenase [Haemophilus ducreyi 35000HP]
gi|33148240|gb|AAP95760.1| NADH dehydrogenase [Haemophilus ducreyi 35000HP]
Length = 428
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 151/352 (42%), Gaps = 40/352 (11%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
K VLL+D++ ++KP+L+E+ +G +D A + N G +F + + +
Sbjct: 31 KAHVLLIDRNTTHLWKPLLHEVATGSLDEGIDALSYRAHAKNHGFEFQQGTLIAVDREQK 90
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV 227
P+ ++ E V YD LV+++G++ G AE ++ A
Sbjct: 91 QITLAPIYNEQNELLVKERQ--VAYDKLVIAIGSKSNDFGTKGVAEHCIFLDDIKQAKLF 148
Query: 228 DRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKV-QLVLGYFV 286
+++ EL + F + + +V+ I G G +A +A+ + + G
Sbjct: 149 QKRMMELFLQ-FSHSDNQ------DVKIAIVGGGATGIELSAELYNTAKHLHEYGFGKLH 201
Query: 287 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA---IK-----------GLES 332
R +V EAS + IP + K S+ + EL+ A +K GL +
Sbjct: 202 RASLKVTLVEASER-----LIPALT-QKVSNSALYELRKAGVDVKLNTMITEAVENGLIT 255
Query: 333 QI---FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 389
Q EA+L++W+ G K P + N Q E ETL ++ +G
Sbjct: 256 QTGEKIEANLIVWSAGVKA------PDFVKNLGFETNHLNQIEVKETLQTTVDDAVYVIG 309
Query: 390 DSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 441
D ++L G+P+P AQ A Q A G N+ AA+ + L PF+F + G ++
Sbjct: 310 DCASLM-QDGKPIPPRAQAAHQMATQCGKNIIAALTGKELKPFKFNDRGSLL 360
>gi|403507724|ref|YP_006639362.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Nocardiopsis alba ATCC BAA-2165]
gi|402802850|gb|AFR10260.1| pyridine nucleotide-disulfide oxidoreductase family protein
[Nocardiopsis alba ATCC BAA-2165]
Length = 457
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 163/400 (40%), Gaps = 69/400 (17%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI ++G GFGGL+T LE + + + LV + ++ P+L ++ SG +
Sbjct: 3 RPRIVVVGAGFGGLHTVRHLERRI--PNGAADIALVAPHDYMLYSPLLPQVASGLLTPQS 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+A L T P +GV+ P + YD LVL+
Sbjct: 61 VAMSVHRLTRKT----------RFVPGHAIGVD-PRERVVVVRRPTGELIPCPYDRLVLA 109
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELE-----RRNFERLEEKGIVQAIN 252
G + +PG AE A+ TL +A + D L++LE R ER EE+ +
Sbjct: 110 PGGVTREFDIPGLAEHAYGAKTLAEAVLLRDHVLAQLELANDSRDPIER-EERCRFVVVG 168
Query: 253 VETTICPTGTPGNR---EAALKVLSARKV---QLV-------------LGYFVRCIRRVG 293
T T R EAA + R V LV LG + R
Sbjct: 169 GGYTGVETAASLMRLCEEAARRYPELRSVIRWHLVDIAPKVLPELGDRLGRKAMDLLRGM 228
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLP 351
E +K ++ ++ADK + + + ++WT G PL+
Sbjct: 229 GIEVKLKV----SVREVSADK------------VVLTDGRSLPCRTLIWTAGVSPSPLME 272
Query: 352 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP---LPATAQV 408
++ P RG+ E L V G +FALGD++A+ D S P TAQ
Sbjct: 273 TLDKPT---------MRGRLEVGTDLSVPGLSDVFALGDAAAVPDLSSADSAYCPPTAQY 323
Query: 409 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
A +QA+ A N+ A++ RPL F+ +++G ++ L DA
Sbjct: 324 AGRQAEVAAHNVVASVLGRPLHEFKHKDMGLVVDLSGRDA 363
>gi|411118962|ref|ZP_11391342.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410710825|gb|EKQ68332.1| NADH dehydrogenase, FAD-containing subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 453
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 94/417 (22%), Positives = 156/417 (37%), Gaps = 77/417 (18%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANT-GVQFFKDRVKLLCPSDHL 168
QV LVD+ +F+P+LY++ +G + +I+ +L+N+ D V + P
Sbjct: 35 QVTLVDRRNFHLFQPLLYQVATGTLSPADISSPLRGILSNSRNTTVLMDEVLDVDPQQQ- 93
Query: 169 GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD 228
++ G + YD L+L+ G A T+EDA
Sbjct: 94 -------------TVITRGQQLPYDTLILATGVSHHYFGNDQWKTTAPGLKTVEDAL--- 137
Query: 229 RKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKV-----------LSARK 277
E+ RR F E A ET P R+A L L+
Sbjct: 138 ----EMRRRIFMAFE------AAEKETD------PSKRQAWLTFVIVGGGPTGVELAGAI 181
Query: 278 VQLVLGYFVRCIRRVGEFEASV------------KQPE-----SGAIPNIAADKNSDKYI 320
+L + R + EA V PE + A+ + + +
Sbjct: 182 AELAFNTLKQDFRNIDTTEAKVILLEGMDRILPPYAPELSAKAAEALTQLGVSVQTKTLV 241
Query: 321 LELQPAI----KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD---LPLNARGQAET 373
++ I +G Q A +LW G K L D + L+ G+
Sbjct: 242 TNIEHNIVTAKQGDTIQQIPARTILWAAGVK-----ASGMGKILADRTGVTLDRVGRVIV 296
Query: 374 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 433
+ L + G+P IF +GD + +PLP A VA Q+ F L A + ++P+ FR
Sbjct: 297 EPDLSIAGYPNIFVIGDLANYSHQGEKPLPGVAPVAMQEGQFVAKLLKARLQNQPVPTFR 356
Query: 434 FQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
+ + G + ++G+N A + V L GPI A++ L +++L V + W
Sbjct: 357 YHDAGSLAVIGQNKAVAD---LNNVKLSGPIAWFVWVFAHIFYLIEYDNKLIVMLQW 410
>gi|197335229|ref|YP_002157160.1| NADH dehydrogenase [Vibrio fischeri MJ11]
gi|197316719|gb|ACH66166.1| NADH dehydrogenase [Vibrio fischeri MJ11]
Length = 408
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 172/407 (42%), Gaps = 70/407 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
RI ++GGG GL L +L+ + +K +++LV+ +KP L+E+ +G D+
Sbjct: 3 RIIVVGGGAAGL----ELSTLLTKSTRKEDEIILVEPETHHYWKPRLHEIAAGTFDSDLD 58
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDH-LGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ + A+ G Q ++ + + + L V P GT ESGL YD+LV++
Sbjct: 59 SVCYFTHGAHHGYQHYQGAMTGIDRENQTLLVRRP-----DGT---ESGL--SYDYLVVA 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
+GA GA E + A + ++S++ R +G IN I
Sbjct: 109 IGAISNDFNTLGAQEHCLFLDSAGQARQAWNQISQILR--------EGKSSTIN----IV 156
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--AIPNIAADKNS 316
G G AA ++K ++R S+ E+ +PN + K S
Sbjct: 157 GAGATGVELAAELARVSKK-----------LKRYNASSLSINLIEAAHRVLPN-SPQKMS 204
Query: 317 DKYILELQPA--------------IKGLESQI---FEADLVLWTVGSKPLLPHVEPPN-- 357
DK + EL+ + + G+ + + AD+ W G V+ P+
Sbjct: 205 DKVLKELEKSGVNVLLETRISEVTVNGMRTDVDKFLGADIQFWAAG-------VKAPDWL 257
Query: 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
N + DL N Q ++ L PRIFA+GD +A+ G +P AQ A + A
Sbjct: 258 NGIGDLSYNRMNQINVNQNLSSTEDPRIFAIGDCAAIPQPDGSFVPPKAQAANRAAVHLA 317
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPI 464
+L + + L F FQ+ G ++ +G + A +F G L+G +
Sbjct: 318 KSLGRYLRGKELTDFIFQDSGMVVAVGHHFAV--GTFAPGTRLEGKL 362
>gi|424885046|ref|ZP_18308657.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. trifolii WSM2012]
gi|424886426|ref|ZP_18310034.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. trifolii WSM2012]
gi|393175777|gb|EJC75819.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. trifolii WSM2012]
gi|393176808|gb|EJC76849.1| NADH dehydrogenase, FAD-containing subunit [Rhizobium leguminosarum
bv. trifolii WSM2012]
Length = 421
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 95/412 (23%), Positives = 167/412 (40%), Gaps = 71/412 (17%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
++ LVD+ +F+P+LY+ +LS AW I +AD + V +L
Sbjct: 28 KITLVDRRNHHLFQPLLYQVATTILSTSEIAWPIRRLYAD----------RPDVTVLL-G 76
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEFA 215
+ GV+ + TV L +G+ + YD LVL+ GA EP V PG
Sbjct: 77 EVTGVD-----SGAKTVSLRNGMTLGYDTLVLATGATHAYFGHDEWEP---VAPG----- 123
Query: 216 FPFSTLEDACRVDRKLSELERRNFER--LEEKGIVQAINVETTICPTGTPGNREAAL--- 270
TLEDA + R++ FE+ +E V+ + TI G G A +
Sbjct: 124 --LKTLEDATTIRRRV----LLAFEKAEMESDPAVRDALLTFTIVGAGPTGVELAGIIAE 177
Query: 271 ----------KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI 320
+ + RK ++VL R + F + A+ + + + + +
Sbjct: 178 LAHFTLPKEFRNIDTRKTRVVL--VEAGPRALPSFAEELSAYAEKALEKLGVEIHLGRAV 235
Query: 321 LELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVK 380
E + + ++W G P R + P + G+ ++ L
Sbjct: 236 TECSADGVKIGETFVASRTIVWAAGV------TASPAARWLNAPADRAGRVAVEKGLSAP 289
Query: 381 GHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGE 439
G P +F +GD++++ G+P+P A A QQ + + A ++ +P PFR+++ G
Sbjct: 290 GLPDVFVIGDTASVMREDGKPVPGIAPAAKQQGGYVAKVIRARLSGKPAPGPFRYRHQGS 349
Query: 440 MMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+ +G++ A + ++ L G I LA++ L R V SWL
Sbjct: 350 LATIGQSAAIIDFGRIK---LKGWIAWWIWGLAHIYFLIGTRSRFSVAWSWL 398
>gi|410942335|ref|ZP_11374122.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira noguchii
str. 2006001870]
gi|410782590|gb|EKR71594.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira noguchii
str. 2006001870]
Length = 422
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 86/436 (19%), Positives = 176/436 (40%), Gaps = 58/436 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ + ++ ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 ESNQKKVVVIGAGFGGLQAVKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + K+ +L + + P T + YD+L
Sbjct: 58 PADIAIPTRSLVGES-----KNVTVVLGEATKID---PKTKT-----VYYQNTSTNYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI-NVE 254
+LS GA+ ++ L+DA ++ KL +FE+ E G + + ++
Sbjct: 105 ILSAGAKSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKSLL 160
Query: 255 TTICPTGTPGNREAALKV--LSARKVQLVLGYFVRCIRRVGEFEAS-------------- 298
+ G P E A + LS + ++ + ++ EAS
Sbjct: 161 NYVIIGGGPTGVELAGSIAELSHQIIRDEFHKIDPALSKITLIEASPRLLMTFDPSLGEF 220
Query: 299 -VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 357
K+ ES + + + D +Q LE ++ V+W G + N
Sbjct: 221 TKKRLESRGVEVLTGTRVVDINERGIQ-----LEGKMIPTQTVIWAAGVQA--------N 267
Query: 358 NRLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
+ L L+ G+ DE ++G+P +F +GD ++ RPLP + VA QQ +
Sbjct: 268 SIASTLGATLDRGGRVIVDEFCNIEGYPEVFVIGDIASYSKGLERPLPGVSPVAMQQGRY 327
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
+ + ++ PF + + G M +GR DA ++ + G +G A +L
Sbjct: 328 VASLIQNDLKNKKRKPFHYIDKGSMATIGRTDAVAQVGILK---MKGLVGWFAWLFVHLF 384
Query: 476 RLPTDEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 385 YQVGFKNKITILITWV 400
>gi|375361879|ref|YP_005129918.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|421732116|ref|ZP_16171239.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|451347416|ref|YP_007446047.1| NADH dehydrogenase [Bacillus amyloliquefaciens IT-45]
gi|371567873|emb|CCF04723.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|407074329|gb|EKE47319.1| NADH dehydrogenase [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|449851174|gb|AGF28166.1| NADH dehydrogenase [Bacillus amyloliquefaciens IT-45]
Length = 392
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 153/388 (39%), Gaps = 58/388 (14%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG G+GG+ +AL + +D+ + V +V++ L+ L +G V +A
Sbjct: 4 HIVILGAGYGGVLSALTVRKHYSKDEAR--VTVVNKYPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
LL V V V L G + YD LV+ LG
Sbjct: 62 MPLEKLLKGKDVDIKIAEVNSFSVDKK-------------EVALSDGSKLTYDALVVGLG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG------------IV 248
+ +PG E + + DA +V + + E R + + + + V
Sbjct: 109 SVTAYFGIPGLEENSMVLKSAADANKVYKHV-EDRVREYSKTKNEADATILIGGGGLTGV 167
Query: 249 QAINVETTICPTGTPGN----REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES 304
+ + I P T +E LK++ A G + + E + K E
Sbjct: 168 ELVGELADIMPNLTKKYGVDPKEIKLKLVEA-------GPKILPVLPDDLIERATKSLEK 220
Query: 305 GAIPNIAA--DKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNRL 360
+ + N + +++L+ K + A+ +WT G PL+
Sbjct: 221 RGVEFLTGLPVTNVEGNVIDLKDGSKVV------ANTFVWTGGVQGNPLVGE-------- 266
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 420
L +N RG+A ++ L H +F +GDS+ GRP P TAQ+A+Q + G+NL
Sbjct: 267 SGLEVN-RGRATVNDFLQSTSHEDVFVVGDSAVYFAPDGRPYPPTAQIAWQMGELVGYNL 325
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDA 448
+A + + L F+ N G + LGR DA
Sbjct: 326 FAYLEGKTLETFKPVNSGTLASLGRKDA 353
>gi|374998861|ref|YP_004974360.1| NADH dehydrogenase FAD-containing subunit [Azospirillum lipoferum
4B]
gi|357426286|emb|CBS89186.1| NADH dehydrogenase FAD-containing subunit [Azospirillum lipoferum
4B]
Length = 473
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 97/394 (24%), Positives = 153/394 (38%), Gaps = 59/394 (14%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+G GFGGL A L V ++D+ +F P+LY++ + + +I
Sbjct: 16 PHVVIIGAGFGGLACAQALGG------TGIPVTVIDRRNYHLFVPLLYQVATAALSPADI 69
Query: 140 APRFADLLAN-----------TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL 188
A +L+ TGV + V+L +GP
Sbjct: 70 AQPIRKILSRHPDIRVVLGEVTGVDTERRLVRL-------NPDGPRRDGD---------- 112
Query: 189 IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFERLEEKGI 247
+ YD LV++ G+ A A T+EDA + R L ER E+
Sbjct: 113 -IRYDRLVIATGSSYSYFGHDEWAAVAPGIKTIEDAQHIRARLLGCFERAELSTDPEE-- 169
Query: 248 VQAINVETTICPTGTPGNREAALKVLS------ARKVQLVLGYFVRCI------RRVGEF 295
QA+ + T + G P E A V AR + + R + R +G F
Sbjct: 170 -QAM-LMTVVIVGGGPTGVELAGAVAELTRYALARDFRRIDPRSARILLVEAGPRLLGTF 227
Query: 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
+ + A+ + + + + ++ + + A ++W G
Sbjct: 228 PEHLSRYAQHALGWLGVTVMTGQAVENIEAGGVTIGGRFIPAGTMVWGAGV------AAS 281
Query: 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415
P R + + G+ D L V G +FALGD++ G+PLP AQVA QQ
Sbjct: 282 PAGRWLGVETDRAGRIRVDADLSVPGLDGVFALGDTALGAADDGKPLPGLAQVAKQQGQH 341
Query: 416 AGWNLWAAI-NDRPLLPFRFQNLGEMMILGRNDA 448
G L A I +P+ PFRF+N G I+GR+ A
Sbjct: 342 LGTALAANILRGKPMPPFRFKNRGNTAIVGRSAA 375
>gi|241889775|ref|ZP_04777073.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase YumB
[Gemella haemolysans ATCC 10379]
gi|241863397|gb|EER67781.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase YumB
[Gemella haemolysans ATCC 10379]
Length = 396
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 99/389 (25%), Positives = 165/389 (42%), Gaps = 61/389 (15%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ILG G+ GL T L+ + K V LV+++ L+E+ +G + + +I
Sbjct: 4 VVILGAGYAGLTTLKGLKKAAKAGEVK--VTLVNKNSYHYDTVNLHEVSAGNIASRDICI 61
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
DL++ GV+F +D V + L +L ++YD LV+ LG
Sbjct: 62 DIKDLVS-PGVEFIQDEVIKIDTEKKL--------------VLTKKHELDYDVLVVGLGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
+P+ + G AE A P + + A ++ L + R + EEK + ++ + TG
Sbjct: 107 QPETFGIEGMAENAMPIADINAAEKISATLED-NFRKYATSEEKDVK---DISVIVGGTG 162
Query: 262 TPGNREAALKVLSARKVQLVLGYFV--RCIRRVGEFEASVKQP--------------ESG 305
G L L RK +L Y + + ++ G A P E
Sbjct: 163 LAGME--FLGELVHRKKELCSKYGIDEKLVKIYGLDAAPTLLPMFTKEYSDYARKFLEDN 220
Query: 306 AIPNI--AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD- 362
I I A K + K ++ + G ++F + LV WT G + N+L D
Sbjct: 221 GIEIILGAGIKGATKDSFTIE--VDGERKELFASTLV-WTAGVR---------GNKLMDE 268
Query: 363 -LP-LNARGQAETDETLCVKGHPRIFALGDSSALRDSSG-RPLPATAQVAFQQADFAGWN 419
P L+ RG+ T + L V G ++ +GD +A ++ RP P TAQ+A Q + G
Sbjct: 269 AFPELSKRGRLVTTQQLTVPGLDDVYIVGDCAAFIETGQERPYPTTAQIANQMGAYVG-- 326
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDA 448
A I+ + + F++ N G + LG D
Sbjct: 327 --ARISGKQVGDFKYINRGVVCSLGHKDG 353
>gi|223041857|ref|ZP_03612045.1| NADH dehydrogenase [Actinobacillus minor 202]
gi|223017350|gb|EEF15773.1| NADH dehydrogenase [Actinobacillus minor 202]
Length = 425
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 139/347 (40%), Gaps = 28/347 (8%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
KK V+L+D++ ++KP+L+E+ +G +D A + + F + + L +
Sbjct: 27 KKANVILIDRNSTHLWKPLLHEVATGSLDDGTDAVSYRAHATHHNFSFRQGTMSGLDREN 86
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ P+ G ++ E + YD LVL++G++ G E F E A
Sbjct: 87 KQVIIAPIYNEEGELLVAERR--IAYDKLVLAIGSQSNDFGTKGVKENCFFLDGSEQA-- 142
Query: 227 VDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPG-NREAALKVLSARKVQLVLGYF 285
++R E + + +V+ I G G A L +A G
Sbjct: 143 -----KMFQKRFLESVLKFSFNDDHDVKIAIVGGGATGIELSADLYNAAAHLNDYGFGKL 197
Query: 286 VRCIRRVGEFEA------SVKQPESGA----IPNIAADKNSDKYILE-LQPAIKGLESQI 334
R V EA ++ + S A + D + + E L+ + + +
Sbjct: 198 KRTNINVTLIEAGPRLIPALTEKVSAAALSELTKTGVDVRLNTMVTEALEDGLITKDGEK 257
Query: 335 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 394
EADL++W G K P + N Q E TL ++ +GD +AL
Sbjct: 258 IEADLMVWAAGVKA------PEFTKEFGFETNRLNQIEIKNTLQTTVDDSVYVIGDCAAL 311
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 441
G+P+P AQ A Q A G N+ AA+ +PL F+F + G ++
Sbjct: 312 I-QDGKPIPPRAQAAHQMAKVCGKNIVAALEGKPLQSFKFNDKGSLL 357
>gi|344998232|ref|YP_004801086.1| NADH dehydrogenase (ubiquinone) [Streptomyces sp. SirexAA-E]
gi|344313858|gb|AEN08546.1| NADH dehydrogenase (ubiquinone) [Streptomyces sp. SirexAA-E]
Length = 453
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 107/434 (24%), Positives = 187/434 (43%), Gaps = 52/434 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI ++G GF G+ RLE + + + LV ++ P+L ++ SG +
Sbjct: 3 RPRILVVGAGFAGIECVRRLERSLAPGEA--DIALVTPFSYQLYLPLLPQVASGVLTPQS 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+A ++ + + P +GV+ P A + + + YD+LVL+
Sbjct: 61 VA---------VSLRRSRRHRTRIVPGGAIGVD-PKAKVCVVRKITDEIVNEPYDYLVLA 110
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETTI 257
G+ + +PG E A TL +A + D +S+L+ + + E + +A ++ +
Sbjct: 111 AGSVTRTFDIPGLVENARGMKTLAEAAYIRDHVISQLDLADASQDEAE---RASRLQFVV 167
Query: 258 CPTGTPGNREAA-LKVLSARKVQLVLGYFVRCIRRVGEFE----ASVKQPESGAIPNIAA 312
G G AA L+ L+ L ++ R ++ ++ A PE G +AA
Sbjct: 168 VGGGYAGTETAACLQRLTTN----ALKHYPRLDPKLIKWHLIDIAPKLMPELGDKLGLAA 223
Query: 313 -DKNSDKYI---LELQPAIKGLESQIFEADLVL------WTVG--SKPLLPHVEPPNNRL 360
D D+ I L + A G + F VL WT G + PL+ ++
Sbjct: 224 LDILRDRGIEVSLGVSVAEAGPDKVTFTDGRVLPCRTLIWTAGVAASPLVATLDAE---- 279
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD---SSGRPLPATAQVAFQQADFAG 417
RG+ + V G +FALGD++A+ D G P TAQ A +Q
Sbjct: 280 -----TVRGRLAVSPEMSVPGADGVFALGDAAAVPDLTKDDGAICPPTAQHAMRQGRALA 334
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
NL A++ +RPL P+ ++LG ++ LG DA P G+ L G + + + L
Sbjct: 335 DNLIASLRNRPLQPYVHKDLGLVVDLGGRDAVSRPL---GIELKGMPAQAVARGYHWSAL 391
Query: 478 PTDEHRLKVGVSWL 491
T+ + +V +W+
Sbjct: 392 RTNVAKTRVMTNWM 405
>gi|409438829|ref|ZP_11265892.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Rhizobium mesoamericanum STM3625]
gi|408749489|emb|CCM77068.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Rhizobium mesoamericanum STM3625]
Length = 423
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 102/415 (24%), Positives = 175/415 (42%), Gaps = 77/415 (18%)
Query: 110 QVLLVDQSERFVFKPMLYE----LLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPS 165
++ L+D+ +F+P+LY+ +LS AW I ++D D LL
Sbjct: 28 RITLIDRRNHHLFQPLLYQVATTILSTSEIAWPIRHLYSDR---------PDVTTLL--G 76
Query: 166 DHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA----------EPKLDVVPGAAEFA 215
+ +G++ T V L SG+ + YD LVL+ GA EP V PG
Sbjct: 77 EVVGID-----TAAKAVSLRSGMTLRYDTLVLATGATHAYFGRDEWEP---VAPG----- 123
Query: 216 FPFSTLEDACRVDRKLSELERRNFERLEEK--GIVQAINVETTICPTGTPGNREAAL--- 270
TLEDA + R+L FER E + ++ + TI G G A +
Sbjct: 124 --LKTLEDATTIRRRL----LLAFERAETETDAAIRDALLTFTIVGAGPTGVELAGIIAE 177
Query: 271 ----------KVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIPNIAADKNSDKY 319
+ + RK ++VL V RV F + S A+ + + + +
Sbjct: 178 LARKTLPREFRNIDTRKTRVVL---VEAGPRVLPTFAEELSAYASQALQELGVELHIGER 234
Query: 320 ILELQPAIKGLE-SQIF-EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETL 377
++E +G+E SQ F + ++W G + P + D+ + G+ ++ L
Sbjct: 235 VVEC--TTEGVETSQGFIPSHTIVWAAGVQ------ASPAAKWLDVAADRAGRVVVEKDL 286
Query: 378 CVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQN 436
G+P +F +GD++A+ + G P+P A A QQ +A + A + P PF +++
Sbjct: 287 TAPGYPDVFVVGDTAAVMQTGGAPVPGIAPAAKQQGAYAAKVIRARLAGDPAPPPFCYRH 346
Query: 437 LGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
G + +G++ A + ++ L G I +A++ L R V SWL
Sbjct: 347 QGSLATIGQSAAIIDFGRIK---LKGWIAWWIWGIAHIYFLIGTRSRFAVAWSWL 398
>gi|427738976|ref|YP_007058520.1| NADH dehydrogenase, FAD-containing subunit [Rivularia sp. PCC 7116]
gi|427374017|gb|AFY57973.1| NADH dehydrogenase, FAD-containing subunit [Rivularia sp. PCC 7116]
Length = 425
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 97/433 (22%), Positives = 174/433 (40%), Gaps = 58/433 (13%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KPR+ I+G GF G+ A +L VLL+D+ F PMLY++ + +
Sbjct: 4 QKPRVVIIGAGFAGVEVAKKL------GKYGVNVLLIDRHNYHTFVPMLYQVATAVLYPH 57
Query: 138 EIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
+I LL N V F + V+ + + + C + ++Y++LV
Sbjct: 58 QIIYPLRRLLRNLPTVNFLQADVR------KVDFDNQIVCA--------DNVAIDYNYLV 103
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
++ G++ + V GA E +FP TL DA + ++ R E+ V + +T
Sbjct: 104 IATGSQSQFLGVTGAPENSFPMRTLTDAIAIRNQV-------LSRFEQATKVTNKDEQTR 156
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--AIPNIAAD- 313
+ G ++ L+ +L+ + + A V +SG P+
Sbjct: 157 LLTFVIVGGGATGIE-LAGSLNELIQSALKKDYPTLNPDSARVILIQSGDRLFPSYPQKL 215
Query: 314 -KNSDKYIL-------------ELQPAIKGLE-SQIFEADLVLWTVGSKPLLPHVEPPNN 358
K ++K++L ++ P LE + + D V+WT G P +
Sbjct: 216 GKYTEKWLLHHGIKVHLNSKVSKVTPEAVYLEDNTVIFTDTVIWTAGVLAATPETK---- 271
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
+ A+ + ++TL + GH I+ +GD S + + AQ A QQ A
Sbjct: 272 --QSVKTAAKEKVIVEQTLQLCGHKNIYGVGDVSYV--DTQEEFNGVAQEAIQQGKTAAD 327
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
N+ + F + N G + I+ ++ A V + + G I +L+ LP
Sbjct: 328 NILLQMRGESPKSFNYFNKGRLAIIAKH-AGVGK--IGKFPIKGFIAWFLWLEVHLLYLP 384
Query: 479 TDEHRLKVGVSWL 491
+RL V +WL
Sbjct: 385 GIRNRLGVLFNWL 397
>gi|398330939|ref|ZP_10515644.1| NADH dehydrogenase [Leptospira alexanderi serovar Manhao 3 str. L
60]
Length = 422
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 86/440 (19%), Positives = 173/440 (39%), Gaps = 66/440 (15%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
D +K ++ ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 DSRKRKVVVIGAGFGGLQVIKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI------ 189
+IA L+ +N + V L + +
Sbjct: 58 PADIAIPIRSLVGEK-------------------LNVTVVLGEATKVDLATKTVYYQNTS 98
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG--- 246
YD+L+LS GA+ ++ L+DA ++ KL +FE+ E G
Sbjct: 99 TNYDYLILSAGAKSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPE 154
Query: 247 IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF---------VRCI----RRVG 293
+V+A+ + G P E A + Q++ F + I R +
Sbjct: 155 VVKAL--LNYVIIGGGPTGVELAGSIAELSH-QIIRDEFHTIDPALSKITLIEAAPRLLM 211
Query: 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 353
F+ S+ + + + + + ++++ LE ++ + V+W G +
Sbjct: 212 AFDPSLGEFTKKRLESRGVEVLTGTRVIDINERGVQLEGKMIPTETVIWAAGVQA----- 266
Query: 354 EPPNNRLHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 411
N L L+ G+ DE ++GHP +F +GD + RPLP + VA Q
Sbjct: 267 ---NGIASTLGVTLDRGGRVIVDEFCNIEGHPEVFVIGDIANYSKDLERPLPGVSPVAMQ 323
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
Q + + + ++ FR+ + G M +GR DA ++ + G G A
Sbjct: 324 QGRYVAALIQGDLKNKKRKSFRYIDKGSMATIGRTDAVAQVGVLK---MKGLFGWLAWLF 380
Query: 472 AYLIRLPTDEHRLKVGVSWL 491
+L ++++ + ++W+
Sbjct: 381 VHLFYQVGFKNKVTILLTWV 400
>gi|242373108|ref|ZP_04818682.1| NADH dehydrogenase [Staphylococcus epidermidis M23864:W1]
gi|242349262|gb|EES40863.1| NADH dehydrogenase [Staphylococcus epidermidis M23864:W1]
Length = 402
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 94/408 (23%), Positives = 162/408 (39%), Gaps = 85/408 (20%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D+ ++ L++++E L+E +G ++
Sbjct: 3 QNRKKVLVLGAGYAGLQTVTKLQKEISTDE--AEITLINKNEYHYESTWLHEASAGTIN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DL+ +D+V + + N T G + +YD L
Sbjct: 60 ------YEDLMYPVESALKQDKVNFVVAEVTKIDRNAKRVETDKG--------VYDYDVL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK------------------------- 230
V++LG + + G ++AF + + ++ R
Sbjct: 106 VVALGFVSETFGIDGMKDYAFQIENVLTSRKLSRHIEDKFANYAASKEKDDKDLAILVGG 165
Query: 231 --------LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 282
L EL R E + GI Q+ V+ T EAA K+L +LV
Sbjct: 166 AGFTGIEFLGELTERIPELCSKYGIDQS-KVKITCV--------EAAPKMLPMFSDELV- 215
Query: 283 GYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 341
Y V + G EF+ A P +A N +++E+ E Q EA +
Sbjct: 216 SYAVNFLEDRGVEFKI--------ATPIVAC--NDKGFVVEVNG-----EKQQLEAGTSV 260
Query: 342 WTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGR 400
WT G + H+ + RG+ + L ++GH IF +GD SA + + R
Sbjct: 261 WTAGVRG--SHLMEES-----FEGVKRGRIINKQDLTIEGHDDIFVIGDCSAFIPEGEER 313
Query: 401 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
PLP TAQ+A QQ + N+ +N F + N G + LG +D
Sbjct: 314 PLPTTAQIAMQQGEHVAKNIKHILNGEAKEDFHYVNRGTVCSLGSHDG 361
>gi|162451296|ref|YP_001613663.1| NADH dehydrogenase [Sorangium cellulosum So ce56]
gi|161161878|emb|CAN93183.1| NADH dehydrogenase [Sorangium cellulosum So ce56]
Length = 445
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 152/389 (39%), Gaps = 60/389 (15%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ I+G GFGGLY A L ++P +V ++D+ F+P+LY++ + + A +IA
Sbjct: 4 VVIIGAGFGGLYAARALR-------REPVRVTVIDRHNHHTFQPLLYQVATAGLSASDIA 56
Query: 141 PRFADLL---ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+L NT V + VK + P V+ E G + YD L++
Sbjct: 57 TPIRHVLRKQKNTSVILAE--VKAIDPVQK-------------RVIFEDGEL-GYDKLIV 100
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK-LSELERRNFERLEEKGIVQAINVETT 256
+ GA A A T+EDA + R+ L E E + V
Sbjct: 101 AAGASHSYFGNDAWAAVAPGLKTVEDALEIRRRVLLAFEAAEREPDPARRSAWMTFVVVG 160
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV------------KQPES 304
PTG L+ +L VR RR+ +A + PE
Sbjct: 161 AGPTGVE---------LAGALSELARHTLVREFRRIDPSKARILLLEGAGQVLPSYVPEL 211
Query: 305 G--AIPNIAA---DKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
G A +AA + ++ + ++ + + EA VLW G R
Sbjct: 212 GEKARQQLAALNVEVRTNCRVTDIDEEGVSIGDKRIEARTVLWGAGV------AASALAR 265
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
+PL+ G+ L V GH I+ +GD ++++ G P+P A A Q A
Sbjct: 266 TLGVPLDRAGRVLVAPDLTVPGHEDIYVIGDLASVKQEDGTPVPGVAPAAIQGGRHAARC 325
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDA 448
+ + P LPFR+ + G + +GR A
Sbjct: 326 IARTLRGLPRLPFRYNDRGSLSTIGRAAA 354
>gi|85708066|ref|ZP_01039132.1| NADH dehydrogenase [Erythrobacter sp. NAP1]
gi|85689600|gb|EAQ29603.1| NADH dehydrogenase [Erythrobacter sp. NAP1]
Length = 456
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 173/408 (42%), Gaps = 43/408 (10%)
Query: 61 VTSEDESASQTYTWPD-KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119
V S +S P+ K+K +I I+GGG GGL +L + + K+ ++LVDQ+
Sbjct: 5 VISRSDSERHPIAIPEAKRKTQIVIVGGGAGGLELVRKLGAKYGR--KRHDIILVDQNLS 62
Query: 120 FVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHG 179
++KP+L+E+ +G +DA + A G +FF+ R++ + P+
Sbjct: 63 HIWKPLLHEVAAGSLDANLDEVGYRGHCARWGYRFFQGRLESIDRKAKTIRLAPVMDDDD 122
Query: 180 GTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR-KLSELERRN 238
++ + YD LVL++G+ VPG AE + A R L+ R +
Sbjct: 123 EEII--GAHTIRYDMLVLAIGSVSNDFGVPGVAEHCLYLDSRRQADRFRTLLLNHCLRVS 180
Query: 239 FERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298
+E G + V I G G E A ++ +A G V E
Sbjct: 181 RAMIENPGADSRVKV--AIVGAGATGV-ELAAELYNAAGALKHYGLEV-----FDESRLD 232
Query: 299 VKQPESG-----AIP---NIAADKNSDKYILELQPAIKGLES----------QIFEADLV 340
V E+G A+P + +A K +E++ ++ +E+ + EADL+
Sbjct: 233 VTILEAGPRILPALPERLSTSARKELKALGVEVREGVQVVEAKRRQLITKTGETIEADLM 292
Query: 341 LWTVGSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSALR-DS 397
+W G K L L L+ R Q ETL P IFA+GD ++ DS
Sbjct: 293 VWAAGVK--------GAEFLSTLGLDTTMRNQIVVTETLQTVTDPDIFAIGDCASYSPDS 344
Query: 398 SGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
P+P AQ A Q AD NL RPL F +Q+ G ++ L R
Sbjct: 345 DAPPIPPRAQAAHQMADTVFKNLRLREQGRPLKRFVYQDNGSLISLSR 392
>gi|418684471|ref|ZP_13245655.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
gi|410740671|gb|EKQ85385.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
Length = 422
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 85/432 (19%), Positives = 176/432 (40%), Gaps = 50/432 (11%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ + ++ ++G GFGGL +L Q+D + ++D+ +F+P+LY++ + +
Sbjct: 3 ESNQKKVVVIGAGFGGLQAVKQLS----QNDN-LDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + K+ +L + + P T + YD+L
Sbjct: 58 PADIAIPTRSLVGES-----KNVTVVLGEATKID---PKTKT-----VYYQNTSTNYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI-NVE 254
+LS GA+ ++ L+DA ++ KL +FE+ E G + + ++
Sbjct: 105 ILSAGAKSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKSLL 160
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVR---CIRRVGEFEASVK-----QPESGA 306
+ G P E A + Q++ F + + ++ EAS + P G
Sbjct: 161 NYVIIGGGPTGVELAGSIAELSH-QIIRDEFHKIDPALSKITLIEASPRLLMTFDPSLGE 219
Query: 307 IPNIAADKN-----SDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
++ + ++++ LE ++ V+W G + N+
Sbjct: 220 FTKKRLERRGVEVLTGTRVIDINEQGVQLEGKMIPTQTVIWAAGVQA--------NSIAS 271
Query: 362 DL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
L L+ G+ DE ++GH +F +GD ++ RPLP + VA QQ +
Sbjct: 272 TLGTTLDRGGRVIVDEFCNIEGHSEVFVIGDIASYSKGLERPLPGVSPVAMQQGKYVASL 331
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ + ++ PF + + G M +GR DA ++ + G G A +L
Sbjct: 332 IQNDLKNKKRKPFHYIDKGSMATIGRTDAVAQVGILK---MKGLFGWLAWLFVHLFYQVG 388
Query: 480 DEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 389 FKNKITILITWV 400
>gi|410944274|ref|ZP_11376015.1| NADH dehydrogenase [Gluconobacter frateurii NBRC 101659]
Length = 430
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 164/390 (42%), Gaps = 40/390 (10%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
K + I I+GGG GL A L + + +K ++ L+D+S V+KPML+ +G V
Sbjct: 2 KPQSEILIVGGGVAGLSLAASLGKTLGKR-RKARITLIDKSFSHVWKPMLHCFAAGTVAN 60
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
F + +F+ V + + V P + G +++LES I YD ++
Sbjct: 61 ENDRISFITQASEHHFEFWPGEVVSIDRENRQVVLSPFHASDG-SLVLESRTI-RYDTII 118
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
L++G+ PG + L +A + K R F E ++
Sbjct: 119 LAIGSCANDFGTPGVKQHCLCIDNLVEANVFNEKFRMELMRAFAHGSE--------LDIA 170
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG-EFEASVKQPESGAIP------N 309
I G G + AA + + +V Y + + + ++ Q +P +
Sbjct: 171 IVGGGATGTQLAAEL---HKALDIVDPYSLHAFGKTPPKLRVTLLQSGPRILPAFPEAVS 227
Query: 310 IAADKNSDKYILELQPA--IKGLESQIF--------EADLVLWTVGSKPLLPHVEPPNNR 359
+AA + ++ + ++ + + +S F A L +W G K P V
Sbjct: 228 LAAQQELERLGVTVRTSARVAAADSTGFILKDGTHIPAKLRVWAAGVKA--PEV---TQT 282
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
+L LN GQ T LC RIFA+GD S ++D PLPATAQVA QQA +
Sbjct: 283 YGNLSLNPTGQILTHSNLCSIDDDRIFAVGDCSFIKDD---PLPATAQVARQQALHLARH 339
Query: 420 LWAAINDRPLLP-FRFQNLGEMMILGRNDA 448
L A + +P F+N G ++ LG+ +
Sbjct: 340 LPAFVERGVKVPGCVFKNKGAIVALGKYNG 369
>gi|414582749|ref|ZP_11439889.1| NADH dehydrogenase [Mycobacterium abscessus 5S-1215]
gi|420878940|ref|ZP_15342307.1| NADH dehydrogenase [Mycobacterium abscessus 5S-0304]
gi|420884232|ref|ZP_15347592.1| NADH dehydrogenase [Mycobacterium abscessus 5S-0421]
gi|420890598|ref|ZP_15353945.1| NADH dehydrogenase [Mycobacterium abscessus 5S-0422]
gi|420894997|ref|ZP_15358336.1| NADH dehydrogenase [Mycobacterium abscessus 5S-0708]
gi|420902546|ref|ZP_15365877.1| NADH dehydrogenase [Mycobacterium abscessus 5S-0817]
gi|420905877|ref|ZP_15369195.1| NADH dehydrogenase [Mycobacterium abscessus 5S-1212]
gi|420973898|ref|ZP_15437089.1| NADH dehydrogenase [Mycobacterium abscessus 5S-0921]
gi|392077858|gb|EIU03685.1| NADH dehydrogenase [Mycobacterium abscessus 5S-0422]
gi|392079995|gb|EIU05821.1| NADH dehydrogenase [Mycobacterium abscessus 5S-0421]
gi|392083849|gb|EIU09674.1| NADH dehydrogenase [Mycobacterium abscessus 5S-0304]
gi|392094309|gb|EIU20104.1| NADH dehydrogenase [Mycobacterium abscessus 5S-0708]
gi|392099907|gb|EIU25701.1| NADH dehydrogenase [Mycobacterium abscessus 5S-0817]
gi|392103781|gb|EIU29567.1| NADH dehydrogenase [Mycobacterium abscessus 5S-1212]
gi|392117901|gb|EIU43669.1| NADH dehydrogenase [Mycobacterium abscessus 5S-1215]
gi|392161781|gb|EIU87471.1| NADH dehydrogenase [Mycobacterium abscessus 5S-0921]
Length = 393
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 98/403 (24%), Positives = 162/403 (40%), Gaps = 75/403 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGE-VDA 136
+ P + +LGGG+ G A RL Q + + LV+ E FV + L++ +G +
Sbjct: 4 QHPHVVVLGGGYAGTMAANRL-----QQNTNIDITLVNPREEFVHRLRLHQFAAGTGIAT 58
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
E AP RV+L+ S + ++ P + LESG +++YD+L+
Sbjct: 59 AEYAP------------MLGKRVRLVVDS-AVRIDAPARL-----IRLESGDVLDYDYLI 100
Query: 197 LSLGAEPKLDV-VPGAAEFAFPFSTLEDA-C-RVDRKLSELERRNFERLEEKGIVQAINV 253
++G+ VPG +EFA+P S E A C RV LE G +V
Sbjct: 101 YAIGSTDSTAAGVPGLSEFAYPLSEFESAQCLRVA-------------LETSG----PDV 143
Query: 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 313
+ T+ G G A+ R V+LV G G+ + P I A
Sbjct: 144 QITVVGAGLTGIEMASELADLGRHVRLVCG---------GQLAPTFGAPARRTIAQWFAR 194
Query: 314 KNSD----KYILELQP-AIKGLESQIFEADLVLWT--VGSKPLLPHVEPPNNRLHDLPLN 366
+ D + E++P ++ + + + +W G L H L ++
Sbjct: 195 RRVDVLENTSVTEVRPDSVVLADGTALSSAITVWAGGFGVPALAAH--------SGLSVD 246
Query: 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426
A G+ TD+TL RI GD+ ++ P + A A + + + D
Sbjct: 247 ADGRLLTDDTLTSMDDGRIVGAGDAVT---TTSLPTRMSCYTANTTGAAAADTVLSRLAD 303
Query: 427 RPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSAR 469
PFR +G+ + LGR +A + + + D P+G AR
Sbjct: 304 TEPAPFRLAYVGQCLSLGRGNAVLQFTRKD----DSPVGAHAR 342
>gi|15805974|ref|NP_294674.1| NADH dehydrogenase II [Deinococcus radiodurans R1]
gi|6458671|gb|AAF10523.1|AE001947_6 NADH dehydrogenase II [Deinococcus radiodurans R1]
Length = 379
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 88/374 (23%), Positives = 149/374 (39%), Gaps = 45/374 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G+ GL T L+ + + LL++Q+ F+ L+E + I
Sbjct: 2 KTLILGAGYAGLATTTSLKPI-----PGLESLLIEQNAYHTFETRLHEAAAHNA---RIT 53
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
LL TGV + +V + + V L+ G ++ YD LV+ LG
Sbjct: 54 LPLIPLLRGTGVHLEQAKVDYVDLDER-------------EVGLKDGRVLMYDTLVVGLG 100
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACR----VDRKLSELERRNFERLEEKGIVQAINVETT 256
+ +PG AE A L DA V+R + N + + + + + T
Sbjct: 101 SVTNFYRIPGLAENATELKQLSDADDIFNFVNRTFDNGYQGNRDIVVGGAGLTGVELVTE 160
Query: 257 ICPTGTPGNREAALK------VLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
+ ++E L V + K+ +L +R + + +K I
Sbjct: 161 LAQRAELLSKERGLPPFNIYLVEAGPKILPILDEALRAKAQQTLEDYGIKIMVGHRIMQA 220
Query: 311 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQ 370
AD + +Q A E ++ +A ++WT G + R + G+
Sbjct: 221 TADS------VTVQTADG--EQKVIKAGKIIWTGGIQA------RDVVRGQKIEKGPGGR 266
Query: 371 AETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLL 430
DE L KG+P +F +GD + G+P+P TAQ A QQ N+ + ++PL+
Sbjct: 267 VVVDEFLRAKGYPDVFIIGDMGLALNQQGKPVPTTAQHAGQQGRTTAKNIMNMVQNKPLV 326
Query: 431 PFRFQNLGEMMILG 444
P+ LGE + LG
Sbjct: 327 PYEPTTLGEFVSLG 340
>gi|222152298|ref|YP_002561473.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus uberis
0140J]
gi|222113109|emb|CAR40504.1| pyridine nucleotide-disulphide oxidoreductase [Streptococcus uberis
0140J]
Length = 403
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 85/393 (21%), Positives = 159/393 (40%), Gaps = 64/393 (16%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ +LG G+ GL T +L+ + + LVD++E L+E+ SG +I+
Sbjct: 4 VLVLGAGYAGLKTVRQLQ----KQSGDFHITLVDRNEYHYEATELHEVASGSQPKEKISF 59
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
D++ V F +D V + P + TV L++ + YD++V++LG
Sbjct: 60 SIKDVINPKKVTFIQDDVVKVNPESN-------------TVELKANGTLHYDYVVVALGF 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
+ + GA E A ++ A + R + ++ + + ++K ++ + IC G
Sbjct: 107 CSETFGISGAKENALEMVDIKSAENIHRHILKMMEK-YRETKDKNYLRLL-----ICGAG 160
Query: 262 TPG-----------NREAALKVLSARKVQLVLGYFVRCI----RRVGEFEASVKQPESGA 306
G R A + +S +++++ C+ R + F+ + Q
Sbjct: 161 FTGIELAGALVDERKRYAEIAGVSENQIEII------CVEAATRILPMFDDEMAQYGVDL 214
Query: 307 IPNIAADKNSDKYILELQPA--------IKGLESQIFEADLVLWTVG--SKPLLPHVEPP 356
I + I E++P + E A+ ++WT G P++
Sbjct: 215 IKKLGVQLMLGSMIKEIKPGEVVYVTSPDEDAERHSIVAETIIWTTGVSGSPVMAESGFA 274
Query: 357 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADF 415
R G+ + L + ++ LGD SAL DS S RP P TAQ+A +
Sbjct: 275 ERR---------GRVIVNNDLRDPKYDNVYILGDVSALMDSESNRPYPTTAQIATRMGAH 325
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
A NL + + F +++LG + +G A
Sbjct: 326 AAKNLLLQLKGEAPVDFNYKSLGTVASVGNTHA 358
>gi|402833819|ref|ZP_10882430.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas sp. CM52]
gi|402279701|gb|EJU28481.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas sp. CM52]
Length = 436
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 99/431 (22%), Positives = 164/431 (38%), Gaps = 102/431 (23%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA-PRFADLLANTGVQFFKDRVKLLCP 164
DK + +VD+ +F+P+LY+L + + EIA P A N V F +++ L
Sbjct: 26 DKSLDITIVDRRNFHLFQPLLYQLATSLLSTDEIAYPIRAFFRHNKNVDLFMAKLRGLDK 85
Query: 165 SDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDA 224
+ + HG + YD+LVL+ GA + E +FP TL++A
Sbjct: 86 ERKVVI-----TNHGE---------IPYDYLVLAAGATTNFFGMESVEEHSFPMKTLQEA 131
Query: 225 CRV-DRKLSELERRN-FERLEEK---------------------GIVQAIN--------- 252
+ + + ER N E EE+ + + IN
Sbjct: 132 LHIRNHVIHMFERANKIEHNEEERRRMLNFVVVGGGPTGVELAGSLAEVINLIMKDEYHN 191
Query: 253 ----------VETT--ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVK 300
VE T + P P ++ ++VL + + ++L V
Sbjct: 192 LSPDEISVKLVEATGGLLPMMPPDLQQETVRVLEKKGIDVMLNTQV-------------- 237
Query: 301 QPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRL 360
DKNS IL+ + ++ + V+W G K + P ++L
Sbjct: 238 ---------AGCDKNS--LILK--------DGRVIPTNTVIWAAGVKAV-----PIISKL 273
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 420
+ G+ +E L V+G IFA+GD ++ + RPL A VA Q A N+
Sbjct: 274 -GFACDRAGRVIVNEKLQVEGERDIFAIGDCASFCHGTERPLATVAPVATQGGAVAARNI 332
Query: 421 WAAI-NDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
I D L F +++ G M +GR +A V+ + G + G I +L+RL
Sbjct: 333 KRLIAGDENLETFHYKDQGAMATIGRTEAVVN---MNGTKMKGFIAWVVWMFVHLLRLAG 389
Query: 480 DEHRLKVGVSW 490
V + W
Sbjct: 390 AHTNTTVLLKW 400
>gi|398025028|ref|XP_003865675.1| NADH dehydrogenase, putative [Leishmania donovani]
gi|322503912|emb|CBZ38998.1| NADH dehydrogenase, putative [Leishmania donovani]
Length = 527
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 107/457 (23%), Positives = 178/457 (38%), Gaps = 89/457 (19%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + +LG G+ G Y A + D + ++ VF P+L + +G ++
Sbjct: 11 KPNVVVLGTGWAGCYAAHHV------DPNLCNIHVISTRNHMVFTPLLPQTTTGTLEFRS 64
Query: 139 IAPRFADL---LANTGVQFFK--------DRVKLLCP-------SDHLGVNGPMACTHGG 180
+ ++ LA +F + D ++ C S+++ VN
Sbjct: 65 VCEPITNIQPALAKPPHRFLRSVIYDVDFDEKQVKCVGVGVVGGSENVPVNT-------- 116
Query: 181 TVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFE 240
V YD+L+++ GA P +PG E AF + +A + ++L ++
Sbjct: 117 -------FSVPYDYLIMAYGARPNTFNIPGVEEKAFFLREVNEARGIRKRL--VQNIMTA 167
Query: 241 RLEEKGIVQAINVETTICPTGTPGNREAA---------------LKVLSARKVQL----- 280
L I +A + T+ G P E A +L KV +
Sbjct: 168 NLPTTSIAEAKRLLHTVVVGGGPTGIEFAANLAEFFREDIKNVNTSLLPYCKVTVLEAGE 227
Query: 281 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 340
VLG F +RR G+ + E I A +D+ + ++ LV
Sbjct: 228 VLGSFDTALRRYGQLRLNQLGVE---IRKTAVVGVTDEEVFTKS-------GEVLPTGLV 277
Query: 341 LWT--VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCV----KGHPRIFALGDSSAL 394
+W+ VGS P+ ++ RG+ D+ L V K P +FA GD +A
Sbjct: 278 VWSTGVGSGPVTKALKCDKTN--------RGRISIDDHLRVLRDGKPIPNVFAAGDCAA- 328
Query: 395 RDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL-LPFRFQNLGEMMILGRNDAAVSPS 453
S+ RPLP A VA +Q + G + + + + PF +++LG M +G A VS
Sbjct: 329 --SNERPLPTLAAVASRQGRYIGKEMNNLLKGKQMSRPFVYRSLGSMASIGNRSAIVSLG 386
Query: 454 FVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
L+G K AYL L + +L V V+W
Sbjct: 387 DKFKFDLNGCAALWVWKSAYLTILGSIRSKLYVIVNW 423
>gi|392374757|ref|YP_003206590.1| NADH dehydrogenase FAD-containing subunit transmembrane protein
[Candidatus Methylomirabilis oxyfera]
gi|258592450|emb|CBE68759.1| putative NADH dehydrogenase FAD-containing subunit transmembrane
protein [Candidatus Methylomirabilis oxyfera]
Length = 442
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 104/445 (23%), Positives = 177/445 (39%), Gaps = 60/445 (13%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
++K +I +LGGGFGGLY A+ L+ + D QV LVD+ F F P L E+ +G +
Sbjct: 2 NRKPAQIVVLGGGFGGLYAAMTLQRELAGSDLA-QVTLVDRRNYFTFTPFLPEVAAGTLG 60
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ L +F + V+ A + + YD+L
Sbjct: 61 RAHVTYPLRFLAQKGEFRFIQGTVQ--------------AFNLVKRTIRTETTTIPYDYL 106
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE- 254
++SLG P P A ++++DA + R + RL E+ +V+ +
Sbjct: 107 IVSLGGVPSFFGNPQIEAHALTLNSVDDALGI--------RNHVIRLFEQAVVEPDPIRR 158
Query: 255 ----TTICPTGTPGNREAALKVLSARKVQLVLGYFV-----RCI------RRVGEFEASV 299
T + P E A ++ + L+ Y V R + R + +F +
Sbjct: 159 RQLLTFVVAGAGPCGVELAAELHHLIRTALLKFYPVDPSEIRIVLVSKGERILPDFAGKL 218
Query: 300 KQPESGAIPNIAADKNSDKYILELQPAIKGL-ESQIFEADLVLWTVGSKP-----LLPHV 353
A+ D S+ + L + +I +W G P LLP
Sbjct: 219 ADTGQQALIKRGIDVKSNTRVTGASAEYVELNDREIIPTRTTIWAAGVTPNPVLALLPAT 278
Query: 354 EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQ 412
+ P +G DE L + P ++ +GD +++ D GRP PA A VA +Q
Sbjct: 279 KSP-----------QGGIVVDEFLKIPEFPEVYVIGDGASVMDRRQGRPYPALAPVAIRQ 327
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
A N+ + R PFRF G ++ LG A V+ + G+ G +G ++A
Sbjct: 328 GIRAAGNIMNTLQGRAREPFRFDFTGNIVGLGCGMALVN---LLGIKFHGRLGWWLYRMA 384
Query: 473 YLIRLPTDEHRLKVGVSWLTKSAID 497
+L RL + ++ + ++ + D
Sbjct: 385 HLQRLVSFRNKASLALTLALNTIFD 409
>gi|304309896|ref|YP_003809494.1| oxidoreductase [gamma proteobacterium HdN1]
gi|301795629|emb|CBL43828.1| predicted oxidoreductase [gamma proteobacterium HdN1]
Length = 408
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 88/407 (21%), Positives = 160/407 (39%), Gaps = 89/407 (21%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
KKK RICI+GGGF GL+ A + +K +V ++D + P ++E+LSG
Sbjct: 9 KKKHRICIVGGGFSGLHAAQYFKP------EKYEVTVIDPQPFIEWLPNIHEVLSGMKKG 62
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLV 196
E+ ++ G F ++V + ++ E G ++ +D +
Sbjct: 63 DELRLPRQPVIERLGHTFRMEKVTDIS---------------ANSLTTEWGKVLPFDACI 107
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETT 256
+ G L VPGA +F FPF ++E ++ ++L +G + + T
Sbjct: 108 VCTGNSYDLQQVPGANQFTFPFKSVESCQQIAKRL------------HRGTLSSRVTRVT 155
Query: 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD-KN 315
+ +G G VLG +R R +FE V P + N +D +
Sbjct: 156 VVGSGLGGVE--------------VLGEVLRAYRARPQFEFQVVSPTQKMLENAPSDLEA 201
Query: 316 SDKYILELQPAIKGLESQI---------------FEADLVLWTVGSKPLLPHVEPPNNRL 360
S ++ P L +++ E+D+ +WT G+ P V+ +++
Sbjct: 202 SIRHHTRRLPMEYHLGNEVDTVDREGLVLTSGRLIESDVTIWTGGAAPRSGKVQSESSQW 261
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 420
+ +E L + H +F +GD++ D + A A + A N
Sbjct: 262 ----------GKVNEFLQSQ-HSNVFVVGDAAQFDDK----VIKQAFHAVEMGRLAAENA 306
Query: 421 WAAINDRPLLPFR---------FQNLGEMMILGRNDAAVSPSFVEGV 458
+ D+PL ++ F +L M+ +D A+S S + V
Sbjct: 307 ERFLTDKPLKSYKPSHRPQLVTFGDLDTFMLF--DDFAISSSLLGAV 351
>gi|374849468|dbj|BAL52483.1| pyridine nucleotide-disulphide oxidoreductase family protein
[uncultured candidate division OP1 bacterium]
gi|374849615|dbj|BAL52626.1| pyridine nucleotide-disulphide oxidoreductase family protein
[uncultured candidate division OP1 bacterium]
gi|374856762|dbj|BAL59615.1| pyridine nucleotide-disulphide oxidoreductase family protein
[uncultured candidate division OP1 bacterium]
Length = 425
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 98/403 (24%), Positives = 159/403 (39%), Gaps = 54/403 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
R+ I+G GFGGL A L + VLL+D++ +F P+LY++ S +D +IA
Sbjct: 4 RVVIIGAGFGGLSCARALAH------RPVDVLLMDKNNYHLFTPLLYQVASSLLDPSDIA 57
Query: 141 -PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P A V F V + L + G ++ Y+++VL+
Sbjct: 58 YPVRAVFRRAKNVHFQMATVTEIDLQARL-------------IKTADGALIPYEYVVLAT 104
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERL--EEKGIVQAINVETTI 257
G+ + A A + +A + + R FE E I + + I
Sbjct: 105 GSVTNYFGMQSVAHIAHELKDIPEALELRNHIL----RCFEAAARESDPIARQRWLTFVI 160
Query: 258 CPTGTPGNREAA-------------LKVLSARKVQLVLGYFVRCIRRV-GEFEASVKQPE 303
G G A L + V++VL V + +V F + Q
Sbjct: 161 VGAGPNGVEYAGALSELIRLVLVRDFSELDMKSVRIVL---VEALGQVLPAFAPKLGQYA 217
Query: 304 SGAIPNIAADKNSDKYILELQPAIKGLES-QIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ + + +L++ L S + E ++WT G K PP
Sbjct: 218 QWQLERRGIEVRLNTRVLDVSGDTVRLSSGETLETKTLIWTAGVKASDLVTVPP------ 271
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
LP G+ E D+ L KG+ +F +GD +A GR LP A+ A Q+ N+
Sbjct: 272 LPRTRAGRIEVDQFLRAKGYENVFVIGDLAAF-VQDGRELPMLARPAMQEGTHVAENILR 330
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIG 465
+ L+PFR+++ G M +GRN A ++ V+L G IG
Sbjct: 331 LGRGQSLIPFRYRDPGIMATIGRNSAVAQ---LKRVSLTGFIG 370
>gi|399022254|ref|ZP_10724332.1| NADH dehydrogenase, FAD-containing subunit [Chryseobacterium sp.
CF314]
gi|398085197|gb|EJL75859.1| NADH dehydrogenase, FAD-containing subunit [Chryseobacterium sp.
CF314]
Length = 422
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 105/443 (23%), Positives = 179/443 (40%), Gaps = 75/443 (16%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K I I+GGGF G+ ++SL Q+D + + LVD++ F P++Y++ + ++A
Sbjct: 2 KKHIIIVGGGFAGINL---IKSL--QNDGRFLITLVDKNNYHFFPPLIYQVATSFIEASN 56
Query: 139 IAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
I+ F L +N V+F R + P T+ ++G + YD LVL
Sbjct: 57 ISYPFRKLFSNNKNVRFHMGRFLRVIPESK-------------TIETDTGNL-GYDDLVL 102
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETT 256
+LG E + +A P +E+A + + L LE E K I A ++
Sbjct: 103 ALGTESNFFGMENVQRYALPMKNIEEALYLRNHILLNLE----EAARNKDIKTAQKLQNV 158
Query: 257 ICPTGTPG-----------NREAALKVLSARKVQLVLGYFVRCI--------RRVGEFEA 297
+ G P R A K K+ L Y + + ++ E
Sbjct: 159 VIAGGGPTGVELAGMLAEMGRYIAEKEYPEIKLALSNLYLIDALPTLLSPMSKKAQETAC 218
Query: 298 -SVKQPESGAIPNIAADKNSD-KYILELQPAIKGLESQIFEADLVLWTVG----SKPLLP 351
++K+ I N++ D K IL + + E + ++WT G P +P
Sbjct: 219 QTLKKLGVKIILNVSVKDYVDGKVILS--------DGKRIETETLIWTSGVIGREVPGIP 270
Query: 352 HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD--SSALRDSSGRPLPATAQVA 409
+ R + +NA Q E G I+ LGD D + P AQVA
Sbjct: 271 EDRVGHGR--RILVNAYNQVE--------GINNIYVLGDLCLQLTEDPYPKGHPQLAQVA 320
Query: 410 FQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS-PSFVEGVTLDGPIGHSA 468
QQ G N +++ L+PF + + G M I+ + +A V P F + +G I
Sbjct: 321 IQQGKNLGRNFKRIEDEKVLVPFEYNDKGSMAIISKFNAVVDLPKF----SFEGFIAWLT 376
Query: 469 RKLAYLIRLPTDEHRLKVGVSWL 491
++I L +++++ + W
Sbjct: 377 WLFIHIIPLVGFGNKIRLAMDWF 399
>gi|298493100|ref|YP_003723277.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase ['Nostoc
azollae' 0708]
gi|298235018|gb|ADI66154.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase ['Nostoc
azollae' 0708]
Length = 453
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 97/405 (23%), Positives = 170/405 (41%), Gaps = 56/405 (13%)
Query: 77 KKKP--RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEV 134
+KKP + I+GGGFGGLY A L + V L+D+ +F+P+LY++ +G +
Sbjct: 6 QKKPSHEVVIIGGGFGGLYAAKALA------NTNVNVTLIDKRNFHLFQPLLYQVATGTL 59
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+I+ + + + K+ LL +++ P A ++ I+ YD
Sbjct: 60 SPADISAPLRSVFSKS-----KNTKVLLGEVNNID---PKAQK-----VIMGDEIIPYDT 106
Query: 195 LVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLE----EKGIVQA 250
L+++ GA EFA T+EDA E+ RR F E E V++
Sbjct: 107 LIVATGANHSYFGKDNWREFAPGLKTVEDAI-------EMRRRIFSAFEGAEKETDPVKS 159
Query: 251 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--AIP 308
T + G P E L+ +L R + E V + G +P
Sbjct: 160 RAFLTFVLVGGGPTGVE-----LAGAIAELAYKTLQEDFRNINTSETRVLLLQGGDRILP 214
Query: 309 NIAADKNSDK--------YILELQPAIKGLESQI--FEADLVLWTVGSKPLLPHVEPPNN 358
+IA + + ++ + +E+ I F+ D L + SK +L +
Sbjct: 215 HIAPELSQAAAAALQKLGVVIHTNTRVTNIENDIVTFKQDGELIEIASKTILWAAGVQGS 274
Query: 359 RL-------HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 411
L D+ + G+ + L +KG+ IF +GD + +G+PLP A VA Q
Sbjct: 275 ALGRILAERTDVECDHAGRVIVEPNLTIKGYKNIFVIGDLANFSHQNGKPLPGVAPVAKQ 334
Query: 412 QADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVE 456
Q ++ G + + L F + ++G + ++G+N A V F++
Sbjct: 335 QGEYVGGLIQLRLQGHTLPEFHYTDVGSLAMIGQNLAVVDLGFIK 379
>gi|398338347|ref|ZP_10523050.1| NADH dehydrogenase [Leptospira kirschneri serovar Bim str. 1051]
gi|418679636|ref|ZP_13240897.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|418740300|ref|ZP_13296678.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
gi|400320078|gb|EJO67951.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|410752304|gb|EKR09279.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
Length = 422
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 85/432 (19%), Positives = 176/432 (40%), Gaps = 50/432 (11%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ + ++ ++G GFGGL +L Q+D + ++D+ +F+P+LY++ + +
Sbjct: 3 ESNQKKVVVIGAGFGGLQAVKQLS----QNDN-LDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + K+ +L + + P T + YD+L
Sbjct: 58 PADIAIPTRSLVGES-----KNVTVVLGEATKID---PKTKT-----VYYQNTSTNYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI-NVE 254
+LS GA+ ++ L+DA ++ KL +FE+ E G + + ++
Sbjct: 105 ILSAGAKSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKSLL 160
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVR---CIRRVGEFEASVK-----QPESGA 306
+ G P E A + Q++ F + + ++ EAS + P G
Sbjct: 161 NYVIIGGGPTGVELAGSIAELSH-QIIRDEFHKIDPALSKITLIEASPRLLMTFDPSLGE 219
Query: 307 IPNIAADKN-----SDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
++ + ++++ LE ++ V+W G + N+
Sbjct: 220 FTKKRLERRGVEVLTGTRVIDINEQGVQLEGKMIPTQTVIWAAGVQA--------NSIAS 271
Query: 362 DL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
L L+ G+ DE ++GH +F +GD ++ RPLP + VA QQ +
Sbjct: 272 TLGTTLDRGGRVIVDEFCNIEGHSEVFVIGDIASYSKGLERPLPGVSPVAMQQGRYVASL 331
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ + ++ PF + + G M +GR DA ++ + G G A +L
Sbjct: 332 IQNDLKNKKRKPFHYIDKGSMATIGRTDAVAQVGILK---MKGLFGWLAWLFVHLFYQVG 388
Query: 480 DEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 389 FKNKITILITWV 400
>gi|418576721|ref|ZP_13140854.1| putative NADH dehydrogenase FAD-containing subunit [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379324878|gb|EHY92023.1| putative NADH dehydrogenase FAD-containing subunit [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 405
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 95/408 (23%), Positives = 164/408 (40%), Gaps = 89/408 (21%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ ++ +LG G+ GL T +L+ + D+ +V L+++++ L+E +G +
Sbjct: 8 RKKVLVLGAGYAGLQTITKLQKQISADE--AEVTLINKNDYHYEATWLHEASAGTI---- 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLL-CPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ DLL KD+V + + N T G I ++D LV+
Sbjct: 62 ---SYEDLLYPVESVVNKDKVNFVKAEVTKIDRNAKKVETDAG--------IFDFDILVV 110
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK--------------------------- 230
SLG E + + G ++AF + A ++ R
Sbjct: 111 SLGFESETFGIKGMKDYAFQIENVLTARKLSRHIEDKFANYASSKQKDDKDLAIIVGGAG 170
Query: 231 ------LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 284
L EL R E + G+ Q+ V+ T EAA K+L +LV +
Sbjct: 171 FTGVEFLGELTDRIPELCNKYGVEQS-KVKITCV--------EAAPKMLPMFSDELV-NH 220
Query: 285 FVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 343
V + G EF+ P +AA N +++++ E Q EA+ V+W
Sbjct: 221 AVNYLENKGVEFKIGT--------PIVAA--NEKGFVVKVND-----EEQQLEANTVVWA 265
Query: 344 VGSKPLLPHVEPPNNRLHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGR 400
G + ++L + RG+ T + L ++G+ IF +GD SA + R
Sbjct: 266 AGVR---------GSKLMEESFEGVKRGRIVTKQDLTIEGYDDIFVIGDCSAFIPAGEER 316
Query: 401 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
PLP TAQ+A QQ + N+ + +P F + + G + LG +D
Sbjct: 317 PLPTTAQIAMQQGEHTAKNVKNILEGQPTNEFEYVDRGTVCSLGAHDG 364
>gi|21224799|ref|NP_630578.1| dehydrogenase [Streptomyces coelicolor A3(2)]
gi|3861428|emb|CAA22033.1| putative dehydrogenase [Streptomyces coelicolor A3(2)]
Length = 629
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 106/431 (24%), Positives = 181/431 (41%), Gaps = 51/431 (11%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI I+G GF G TA L L + + L++ ++ F++ P+L ++ +G ++
Sbjct: 3 RPRIVIVGAGFAGYRTARTLSRLTRH---QADITLLNPTDYFLYLPLLPQVAAGILEPRR 59
Query: 139 IAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
++ + L + + + D + L + H GP GG L YD LVL
Sbjct: 60 VSVSLSGTLPHVRLVLGEADGIDLDGRTVHY--TGP----EGGEGTLA------YDRLVL 107
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDAC----RVDRKLSELERRNFERLEEKGIVQAINV 253
+ G+ KL +PG AE A F L +A V R++ EL +R E A
Sbjct: 108 AAGSVNKLLPIPGVAEHAHGFRGLPEALYLRDHVTRQV-ELAAAADDRAE-----CAARC 161
Query: 254 ETTICPTGTPGNREAALKVL----SARKVQLVLGYFVRCI------RRVGEFEASVKQPE 303
+ G G AA + R+ + G R + R + E + + +
Sbjct: 162 TFVVVGAGYTGTEVAAHGAMYTDAQVRRHPMRTGMRPRWMLLDVAPRVMPEMDERLSRTA 221
Query: 304 SGAIPNIAADKNSDKYILE-LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
+ D + E + + + ++W VG +P P VE
Sbjct: 222 ERVLRQRGVDVRMGTSVKEATHDGVVLTDGSTVDTRTLVWCVGVRPD-PLVE-----SLG 275
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRD--SSGRPLPATAQVAFQQADFAGWNL 420
LP+ RG+ D L V G P +FA GD +A+ D G+ P TAQ A++ N+
Sbjct: 276 LPME-RGRLLVDPHLQVPGRPELFACGDVAAVPDLNQPGQYTPMTAQHAWRHGKVCAHNV 334
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTD 480
A++ +R +++G ++ LG AA +P G+ + GP + + +L +P +
Sbjct: 335 VASLGRGQRRAYRHRDMGFVVDLGGAKAAANPL---GLPMSGPAAGAVTRGYHLAAMPGN 391
Query: 481 EHRLKVGVSWL 491
R++V WL
Sbjct: 392 --RVRVAADWL 400
>gi|442609651|ref|ZP_21024387.1| NADH dehydrogenase [Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441748895|emb|CCQ10449.1| NADH dehydrogenase [Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 439
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 84/366 (22%), Positives = 143/366 (39%), Gaps = 53/366 (14%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
++ + L+D++ ++KP+L+E+ +G +D ++ A G QF L
Sbjct: 32 QRATITLIDKNRTHIWKPLLHEVATGSLDTSLDGVCYSAHAAKHGFQFILGEFTHLNQHS 91
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ G +L E ++YD LV+++G+ PG E F + A R
Sbjct: 92 QTITLKQLTNNKGKVLLPER--TIQYDELVIAIGSVSNDFNTPGVVEHCFFLDSQNQAER 149
Query: 227 VDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 286
L + R + + + ++ I G G LSA V +
Sbjct: 150 FQHALLDSFTRVHQTANDADPSKPSHLSIAIVGGGATGVE------LSAELV-----HVA 198
Query: 287 RCIRRVG--EFEA---SVKQPESG-----AIPNIAADKNSDKYILELQP-AIKGLES--- 332
++ G EF++ S+ E+G A+P + SD ELQ + LE+
Sbjct: 199 SLLKHYGMSEFKSTKLSIHLIEAGPTILPALPK----RISDAARKELQQLGVNVLENTAV 254
Query: 333 -------------QIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETL 377
++ ADL+LW G K + H++ N Q D L
Sbjct: 255 KEATKEGFITKNDELIAADLMLWAAGVKVNDFIKHID-------GFEFNRSNQVLVDAFL 307
Query: 378 CVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNL 437
KG I+ LGD+ A + GR +P AQ A Q A +N+ A + + PF + +
Sbjct: 308 QAKGTEHIYVLGDACAFLQADGRFVPPRAQAAHQMASTLAYNINAKLKGKACKPFEYNDH 367
Query: 438 GEMMIL 443
G ++ L
Sbjct: 368 GSLVNL 373
>gi|428299991|ref|YP_007138297.1| NADH dehydrogenase (ubiquinone) [Calothrix sp. PCC 6303]
gi|428236535|gb|AFZ02325.1| NADH dehydrogenase (ubiquinone) [Calothrix sp. PCC 6303]
Length = 455
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 151/372 (40%), Gaps = 54/372 (14%)
Query: 111 VLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGV 170
V LVD+ +F+P+LY++ +G V +I+ +L+ + K+ +L +H+
Sbjct: 36 VTLVDKRNFHLFQPLLYQVATGTVSPADISSPLRSVLSKS-----KNTKVILGEVNHID- 89
Query: 171 NGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL-------DVVPGAAEFAFPFSTLED 223
+ VL+ I YD L+L+ GA+ +V PG T+ED
Sbjct: 90 ------SQTQQVLMGDEAI-PYDTLILATGAKHSYFGKDEWENVAPG-------LKTVED 135
Query: 224 ACRVDRKL-SELERRNFERLEEKGIVQAINVETTICPTGTP----------GNREAALKV 272
A + RK+ S E E EK V PTG + +
Sbjct: 136 AIEMRRKIFSAFEAAEKETSPEKRRAWLTFVIVGGGPTGVELAGAIAEIAYHTMKDDFRN 195
Query: 273 LSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAI---- 327
+ + Q++L + + RV F + Q ++ + + + ++ +
Sbjct: 196 IDTSETQILL---LEGLDRVLPPFAPELSQEAETSLTKLGVTVQTKTLVTNIENDVVTIK 252
Query: 328 KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD---LPLNARGQAETDETLCVKGHPR 384
+G E A VLW G K P L + + G+ + L +KGHP
Sbjct: 253 QGEEVHQIPAKTVLWAAGVK-----ASPLGKILAESTGAECDRAGRVIVESDLSIKGHPN 307
Query: 385 IFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILG 444
IF +GD + +G+PLP A VA Q+ ++ + A + + L F++ + G + ++G
Sbjct: 308 IFVVGDLANFSHQNGKPLPGVAPVAIQEGEYVASLIKAKLQGQTLPQFKYIDKGSLAVIG 367
Query: 445 RNDAAVSPSFVE 456
N A V F++
Sbjct: 368 HNCAVVDLGFIK 379
>gi|421088152|ref|ZP_15548981.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira kirschneri
str. 200802841]
gi|410003408|gb|EKO53853.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira kirschneri
str. 200802841]
Length = 422
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 85/432 (19%), Positives = 176/432 (40%), Gaps = 50/432 (11%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ + ++ ++G GFGGL +L Q+D + ++D+ +F+P+LY++ + +
Sbjct: 3 ESNQKKVVVIGAGFGGLQAVKQLS----QNDN-LDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + K+ +L + + P T + YD+L
Sbjct: 58 PADIAIPTRSLVGES-----KNVTVVLGEATKID---PKTKT-----VYYQNTSTNYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI-NVE 254
+LS GA+ ++ L+DA ++ KL +FE+ E G + + ++
Sbjct: 105 ILSAGAKSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKSLL 160
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVR---CIRRVGEFEASVK-----QPESGA 306
+ G P E A + Q++ F + + ++ EAS + P G
Sbjct: 161 NYVIIGGGPTGVELAGSIAELSH-QIIRDEFHKIDPALSKITLIEASPRLLMTFDPSLGE 219
Query: 307 IPNIAADKN-----SDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
++ + ++++ LE ++ V+W G + N+
Sbjct: 220 FTKKRLERRGVEVLTGTRVIDINEQGVQLEGKMIPTQTVIWAAGVQA--------NSIAS 271
Query: 362 DL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
L L+ G+ DE ++GH +F +GD ++ RPLP + VA QQ +
Sbjct: 272 TLGTTLDRGGRVIVDEFCNIEGHSEVFVIGDIASYSKGLERPLPGVSPVAMQQGRYVASL 331
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ + ++ PF + + G M +GR DA ++ + G G A +L
Sbjct: 332 IQNDLKNKKRKPFHYIDKGSMATIGRTDAVAQVGILK---MKGLFGWLAWLFVHLFYQVG 388
Query: 480 DEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 389 FKNKITILITWV 400
>gi|340348396|ref|ZP_08671480.1| pyridine nucleotide-disulfide oxidoreductase [Prevotella dentalis
DSM 3688]
gi|433653260|ref|YP_007297114.1| NADH dehydrogenase, FAD-containing subunit [Prevotella dentalis DSM
3688]
gi|339606965|gb|EGQ11917.1| pyridine nucleotide-disulfide oxidoreductase [Prevotella dentalis
DSM 3688]
gi|433303793|gb|AGB29608.1| NADH dehydrogenase, FAD-containing subunit [Prevotella dentalis DSM
3688]
Length = 437
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 105/403 (26%), Positives = 152/403 (37%), Gaps = 83/403 (20%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
R+ I+GGG GL A L + P QV+LVD++ F P++Y++ S ++ I
Sbjct: 12 RVVIVGGGIAGLQLARIL-------CRTPFQVVLVDKNNYNQFPPLIYQVASAGLEPSSI 64
Query: 140 APRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ F L T F V+ + P + L S + YD+LVL+
Sbjct: 65 SFPFRRLFQGRTNFYFRMGEVQAVNPEEQ--------------SLQTSFGTLYYDFLVLA 110
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETTI 257
GA A P T+ +A R+ + L LER E EE + +NV +
Sbjct: 111 AGATTNFFGNADIERNALPMKTVAEAMRLRNTILQNLERAETEDNEE-ARQRLMNV---V 166
Query: 258 CPTGTPGNREAALKV--------------LSARKVQLVL-------------GYFVRCIR 290
G P E A + L A ++ + L G R R
Sbjct: 167 IVGGGPSGVEIAGALAEMKRTIVPRDYPDLDASRMHICLLDSGDRLLKGMDAGLSARAER 226
Query: 291 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350
+ E V + D N +L+ EA L +W G +
Sbjct: 227 DLTELGIKVMKGCR------VVDCNDCGVVLQ--------GGDTLEAGLTVWVSGVRA-- 270
Query: 351 PHVEPPNNRLHDLPLNARGQAE---TDETLCVKGHPRIFALGDSSALRDSSGRPL--PAT 405
+ + LP + G A TD VKG P ++A+GD S + PL P
Sbjct: 271 -------SAIGGLPTASIGHAGRILTDRYCRVKGVPNVYAVGDQSLVEGDEAYPLGHPQL 323
Query: 406 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
AQVA QQA NL + R PF ++NLG M +GR A
Sbjct: 324 AQVAMQQAATVAHNLSRRLEGRAEQPFSYRNLGAMATIGRKKA 366
>gi|394990881|ref|ZP_10383694.1| YjlD [Bacillus sp. 916]
gi|393808235|gb|EJD69541.1| YjlD [Bacillus sp. 916]
Length = 392
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 152/390 (38%), Gaps = 62/390 (15%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
I ILG G+GG+ +AL + +D+ + V +V++S L+ L +G V +A
Sbjct: 4 HIVILGAGYGGVLSALTVRKHYSKDEAR--VTVVNKSPTHQIITELHRLAAGNVSEQAVA 61
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
LL V V V L G + YD LV+ LG
Sbjct: 62 MPLEKLLKGKDVDIKIAEVNSFSVDKK-------------EVALSDGSKLTYDALVVGLG 108
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG-------------- 246
+ +PG E + L+ A ++ +E R E + K
Sbjct: 109 SVTAYFGIPGLEENSM---VLKSAADANKVYKHVEDRVREYAKTKNEADATILIGGGGLT 165
Query: 247 IVQAINVETTICPTGTPGN----REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQP 302
V+ + I P T +E LK++ A G + + E + K
Sbjct: 166 GVELVGELADIMPNLTKKYGVDPKEIKLKLVEA-------GPKILPVLPDDLIERATKSL 218
Query: 303 ESGAIPNIAA--DKNSDKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNN 358
E + + N + +++L+ K + A+ +WT G PL+
Sbjct: 219 EKRGVEFLTGLPVTNVEGNVIDLKDGSKVV------ANTFVWTGGVQGNPLVGE------ 266
Query: 359 RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418
L +N RG+A ++ L H +F +GDS+ GRP P TAQ+A+Q + G+
Sbjct: 267 --SGLEVN-RGRATVNDFLQSTSHEDVFVVGDSAVYFAPDGRPYPPTAQIAWQMGELVGY 323
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
NL+A + + L F+ N G + LGR DA
Sbjct: 324 NLFAYLEGKTLETFKPVNSGTLASLGRKDA 353
>gi|398780617|ref|ZP_10544946.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces auratus AGR0001]
gi|396998082|gb|EJJ09016.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces auratus AGR0001]
Length = 434
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 110/454 (24%), Positives = 187/454 (41%), Gaps = 67/454 (14%)
Query: 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRF 143
I+G GF G A +L Q +++L++ ++ F++ P+L E+ +G ++ I+
Sbjct: 2 IVGAGFAGYECA---RTLSRQAKGAAEIVLLNPNDYFLYVPLLPEVATGILEPRRISVSL 58
Query: 144 ADLLANT--------GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
L V F +V P + G + YD L
Sbjct: 59 TGTLPGVRLVLGEARDVDFEARQVHYTDPEERKGS-------------------LPYDRL 99
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDAC----RVDRKLSELERRNFERLEEKG----- 246
VL++G+ KL VPG AE A F + +A + R++ EL + E
Sbjct: 100 VLTVGSVNKLLPVPGVAEHAHGFRGMPEALFLRDHITRQI-ELAGAAEDAAERSARTTFV 158
Query: 247 IVQAINVETTICPTGTP-----GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQ 301
+V A T + G + L+ R L+L R + E + + +
Sbjct: 159 VVGAGYTGTEVTAQGVRFTDALARQNTGLRDGGPRPRWLLLDIADRLLP---ELDERLSR 215
Query: 302 PESGAIPNIAADKNSDKYILE-LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRL 360
+ D + + E Q + + + + +LW VG +P +P + L
Sbjct: 216 TAERVLRAQGVDVRTGTSVKEATQDGVLLDDGEFVASRSLLWCVGVRP-----DPLVDSL 270
Query: 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPATAQVAFQQADFAGW 418
LP + +G+ DE L V G P +FA GD++A+ D + G P TAQ A +Q A
Sbjct: 271 -GLPTD-KGRLCVDEFLNVPGRPGVFACGDAAAVPDLTRPGEVTPMTAQHAQRQGKVAAR 328
Query: 419 NLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLP 478
N+ A+ +R +LG M+ LG AA +P V L GP+ + +L+ +P
Sbjct: 329 NVAASCGRGAPRAYRHHDLGFMVDLGGLQAAANPLHVP---LSGPLAGLVTRGYHLMAMP 385
Query: 479 TDEHRLKVGVSWLTKSAIDSVALLQSTLTKVLSS 512
++R++V WL +D+V Q ++SS
Sbjct: 386 --DNRVRVAADWL----LDAVLPRQGVQLGLVSS 413
>gi|330468647|ref|YP_004406390.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Verrucosispora maris AB-18-032]
gi|328811618|gb|AEB45790.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Verrucosispora maris AB-18-032]
Length = 428
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 101/429 (23%), Positives = 182/429 (42%), Gaps = 44/429 (10%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+G GF G + A L L + +++L++ ++ F++ P+L E+ +G V+ IA
Sbjct: 1 MVIVGAGFAGYHAAKTLSRLA---RGRAEIVLLNSTDYFLYLPLLPEVAAGVVEPGRIAV 57
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
L + V ++ +DH+ + G T + YD L+LS+G+
Sbjct: 58 PLTGTLGDVRV--------VIGEADHVDLQNRWV---GFTQPEGDRNRLAYDRLILSVGS 106
Query: 202 EPKLDVVPGAAEFAFPFSTLEDAC----RVDRKLSELERRNFERLEEKG-----IVQAIN 252
KL +PG E+A F L +A V R++ EL + + E++ +V A
Sbjct: 107 VNKLLPIPGVTEYAHGFRGLPEALYLHDHVIRQI-ELAEQATDPAEQQARSTFVVVGAGY 165
Query: 253 VETTICPTGTPGNREAALKV--LSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 310
T + G E A + L R ++L R + E + + + +
Sbjct: 166 TGTEVAAHGQLFTDELASQRPRLKIRPKWMLLDVAPRVLP---ELDRRMSRTADRVLRRR 222
Query: 311 AAD-KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
D + + +K + + ++W VG +P P V R +G
Sbjct: 223 GVDVRMGTSVAVATADGVKLTDGEYVPTCSLVWCVGVRPD-PFVAQLGLR------TEKG 275
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPATAQVAFQQADFAGWNLWAAINDR 427
+ DE L V G P ++A GD++A+ D + G TAQ A +Q A N+ A+
Sbjct: 276 RLVVDEYLNVPGFPEVYACGDAAAVPDLTRPGEICTMTAQHAQRQGRLAAHNIAASYGQG 335
Query: 428 PLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVG 487
P++ +LG ++ LG AA +P V L G + + +L+ +P + R +V
Sbjct: 336 RRRPYKHHDLGWVVDLGGKQAAANPL---NVPLSGLPAKAVTRGYHLLAMPGN--RARVS 390
Query: 488 VSWLTKSAI 496
W+ +A+
Sbjct: 391 ADWVLDAAL 399
>gi|357018998|ref|ZP_09081258.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Mycobacterium thermoresistibile ATCC 19527]
gi|356481319|gb|EHI14427.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Mycobacterium thermoresistibile ATCC 19527]
Length = 428
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 93/379 (24%), Positives = 152/379 (40%), Gaps = 58/379 (15%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
D + P++ ++GGG+ G A RL+ D + LV+ V + L+ L +G D
Sbjct: 35 DTRGPKVVVIGGGYAGTLAANRLQRRADVD-----ITLVNARPTMVQRLQLHRLAAGTAD 89
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
A E+ + LL RV+L+ T V L SG +EYD+L
Sbjct: 90 ADEVTADYRGLLGA--------RVRLVVG------EATRIDTAARRVQLRSGAPLEYDYL 135
Query: 196 VLSLGAEPKL-DVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVE 254
+ ++G+ + + VPGAAEFA+P + E A R+ + EL + +
Sbjct: 136 IYAVGSTSAVPESVPGAAEFAYPMADFESAQRLRAVVDELPAQAW--------------- 180
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 314
T+ G G AA R V LV G G + +P +I
Sbjct: 181 ITVVGAGLTGIEIAAELAEQDRTVSLVCG---------GRLAPAFGEPARRSIAAWLTAH 231
Query: 315 N----SDKYILELQP-AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369
+ D ++E++P A+ + + + + +W G +P + + L +A G
Sbjct: 232 HVAVLEDDSVVEVRPDAVVFADGAVRPSAVTVWAGGFG--VPQLAAASG----LSTDALG 285
Query: 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429
+ TD+TL RI GD+ SS PL + A A A + + ++
Sbjct: 286 RLRTDDTLTSVDDDRIVGAGDAVT---SSATPLRMSCYAAAPTAATAADTVLSRLDGAEP 342
Query: 430 LPFRFQNLGEMMILGRNDA 448
PF +G + LGR A
Sbjct: 343 APFALAYVGSTVGLGRRAA 361
>gi|313676638|ref|YP_004054634.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
[Marivirga tractuosa DSM 4126]
gi|312943336|gb|ADR22526.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Marivirga tractuosa DSM 4126]
Length = 437
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 92/395 (23%), Positives = 168/395 (42%), Gaps = 43/395 (10%)
Query: 70 QTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL 129
++ P+ K+ RI I+GGGF G+ A + QD QV+L+D+ F+P+LY++
Sbjct: 5 NSFKIPNTKQKRIVIIGGGFAGITMAKKFAG---QD---VQVVLLDRHNYHTFQPLLYQV 58
Query: 130 LSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI 189
+ ++ IA LL N FF+ + + ++ G +
Sbjct: 59 ATAGLEPDSIAGPLRKLLENHKNIFFR-----MATVSRIDKEDSKVMSNVGEL------- 106
Query: 190 VEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERL----EEK 245
+D+L+++ G++ E AFP + A + + NFE +E+
Sbjct: 107 -SFDYLIIAAGSKTNFFGQNEKFEKAFPLKQIPQALDFRSHILQ----NFEEAVLSSDEE 161
Query: 246 GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 305
I + +N+ + G P E A + +K L Y R+ + G
Sbjct: 162 KIERLMNI---VIVGGGPTGVELAGALGELKKHVLPNDYPDLDFNRLNIYLVEGMDRLLG 218
Query: 306 AIPNIAADKNSDKYILELQPAIKGLESQI--FEADLVLW----TVGSKPLLPHVEPPNNR 359
+ A DK + KY+ + + +K L + + ++ + V++ T+ + LL N
Sbjct: 219 GMSEFA-DKKAQKYLKKFEVNVK-LNTMVDSYDGEKVVFNNNETIPAATLLWGAGVMGNV 276
Query: 360 LHDLPLNA--RGQAETDETLCVKGHPRIFALGDSSALRDSSGRP--LPATAQVAFQQADF 415
+ L + + + D V+G I+A+GD AL ++ P P A VA QQ +
Sbjct: 277 IEGLSEQSVKNSRYKVDRYNLVEGTDNIYAVGDI-ALMETEDFPKGHPMLAPVAMQQGER 335
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAV 450
N+ A++ + PF++ + G M +GRN A V
Sbjct: 336 LSKNILASLKGKEQKPFKYLDKGSMATVGRNKAVV 370
>gi|386838195|ref|YP_006243253.1| oxidoreductase [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374098496|gb|AEY87380.1| putative oxidoreductase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451791487|gb|AGF61536.1| putative oxidoreductase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 458
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 106/436 (24%), Positives = 183/436 (41%), Gaps = 55/436 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+PRI ++G GF G+ RLE + D+ V LV ++ P+L ++ SG +
Sbjct: 6 RPRILVVGAGFAGVDCVRRLERKLAPDEA--DVTLVTPFAYQLYLPLLPQVASGVLTPQS 63
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVN-GPMACTHGGTVLLESGLIVEYDWLVL 197
IA L+ + ++ R+ P +GV+ C + + + YD++VL
Sbjct: 64 IA------LSLRRSRKYRTRI---IPGGAIGVDLKAKVCVI--RTITDKIVNERYDYIVL 112
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEKGIVQAINVETT 256
+ G+ + +PG E AF TL +A + D +S+L + + +A ++
Sbjct: 113 APGSVTRTFDIPGLTEHAFGMKTLAEAAYIRDHVISQL---DLADASDNPAERAARLQFV 169
Query: 257 ICPTGTPGNREAA-LKVLSARKVQ----LVLGYFVRCIRRVGEFEASVKQPESGAIPNIA 311
+ G G AA L+ L+ VQ LV G + + A PE G +
Sbjct: 170 VVGGGYAGTETAACLQRLTHAAVQRYPRLVPGLIKWHLIDI----APKLMPELGDKLGRS 225
Query: 312 ADKNSDKYILELQPAIK----GLESQIFEADLV------LWTVG--SKPLLPHVEPPNNR 359
A + + +E+ + G E F V +WT G + PL+ +
Sbjct: 226 AQEILRRRGIEVSLGVSIAKAGPEEVTFTDGRVVPTHTLIWTAGVVASPLIATLGAET-- 283
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD----SSGRPLPATAQVAFQQADF 415
+G+ +C+ GH +FALGDS+A+ D G P TAQ A +Q
Sbjct: 284 -------VKGRLAVTAEMCLPGHDGVFALGDSAAVPDLAKGQEGAVCPPTAQHAMRQGRK 336
Query: 416 AGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLI 475
N+ A + + + P+ ++LG ++ LG DA P G+ L G + + +
Sbjct: 337 VADNVIATLRGQQMQPYVHKDLGLVVDLGGKDAVSKPL---GIELRGLPAQAVARGYHWS 393
Query: 476 RLPTDEHRLKVGVSWL 491
L T+ + +V +WL
Sbjct: 394 ALRTNVAKTRVMTNWL 409
>gi|363582196|ref|ZP_09315006.1| NADH dehydrogenase (ubiquinone) [Flavobacteriaceae bacterium HQM9]
Length = 419
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 99/409 (24%), Positives = 168/409 (41%), Gaps = 82/409 (20%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+I I+G GF G+ A L+ +KK VL++D++ F+P+LY++ +G ++ + IA
Sbjct: 5 QIVIIGAGFAGISMAKYLK------NKKVDVLVLDENNFHNFQPLLYQIATGGLEPYSIA 58
Query: 141 -PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
P L ++F +V + D+ L S +++YD L+++
Sbjct: 59 YPVRRILRGCRNIRFRMAKVNSIEAKDN--------------TLHTSLGVIKYDQLIIAT 104
Query: 200 GAEPK--------------LDVVPGAAEF-AFPFSTLEDACRVDRKLSELERRNFERLEE 244
G++ L VP A + +F F LE R L + E + +
Sbjct: 105 GSKTNFFNFSEETKKHLLSLKSVPEALDIRSFIFQNLE------RALVKWEGETVDEIIS 158
Query: 245 KGIVQA-----------INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293
IV ++ + P P + +K+ + R ++ +
Sbjct: 159 IAIVGGGPAGIEVAGAIAEMKKHVIPRDFPDLDVSKMKIHLYQSSP-------RLLKSMS 211
Query: 294 EFEASVKQPESGAIPNIAADKNS-----DKYILELQPAIKGLESQIFEADLVLWTVGSKP 348
E EAS K E + NS D +L L+ K F+ D V+W G K
Sbjct: 212 E-EASSKSLEFLEAMGVDVKLNSRVTDYDGDLLVLKTGEK------FKTDTVIWAAGVKG 264
Query: 349 LLPHVEPPNNRLHDLPLNARG-QAETDETLCVKGHPRIFALGD-SSALRDSSGRPLPATA 406
L P + + RG + + DE V G I+A+GD +S + D++ LP A
Sbjct: 265 TLIEGLPED-------VIMRGDRIKVDEFNRVVGSTNIYAIGDVASHVTDTNAYGLPMLA 317
Query: 407 QVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS-PSF 454
VA QQ + N+ ++ + + PF + + G M +GRN A V P F
Sbjct: 318 PVAQQQGELLAKNMLLSLKGKQMTPFNYHDKGCMATIGRNKAVVDLPKF 366
>gi|359725878|ref|ZP_09264574.1| NADH dehydrogenase [Leptospira weilii str. 2006001855]
gi|417781937|ref|ZP_12429672.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira weilii
str. 2006001853]
gi|410777922|gb|EKR62565.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira weilii
str. 2006001853]
Length = 423
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 88/432 (20%), Positives = 172/432 (39%), Gaps = 56/432 (12%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
K +I ++G GFGGL +L + + ++D+ +F+P+LY++ + + +
Sbjct: 6 KRKIVVIGAGFGGLQVIKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLSPAD 60
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYDWLVL 197
IA L+ +R+ + V G T + + YD+L+L
Sbjct: 61 IAIPIRSLVG--------ERLNVTV------VLGEATKVDLATKTVYYQNTSINYDYLIL 106
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKG---IVQAINVE 254
S GA+ ++ L+DA ++ KL +FE+ E G +V+A+
Sbjct: 107 SAGAKSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKAL--L 160
Query: 255 TTICPTGTPGNREAALKVLSARKVQLVLGYF---------VRCI----RRVGEFEASVKQ 301
+ G P E A + Q++ F + I R + F+ S+ +
Sbjct: 161 NYVIIGGGPTGVELAGSIAELSH-QIIRDEFHTIDPALSKITLIEAAPRLLMTFDPSLGE 219
Query: 302 PESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361
+ + + + ++++ LE ++ V+W G + N
Sbjct: 220 FTKKRLESRGVEVLTGTRVIDINERGVQLEGKMIPTGTVIWAAGVQA--------NGIAS 271
Query: 362 DL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
L L+ G+ DE V+GHP +F +GD + RPLP + VA QQ +
Sbjct: 272 TLGVTLDRGGRVIVDEFCNVEGHPEVFVIGDIANYSKGLERPLPGVSPVAMQQGRYVAAL 331
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ + ++ FR+ + G M +GR DA ++ + G G A +L
Sbjct: 332 IQGDLRNKKRKSFRYVDKGSMATIGRTDAVAQVGVLK---MKGLFGWLAWLFVHLFYQVG 388
Query: 480 DEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 389 FKNKVTILITWV 400
>gi|433615682|ref|YP_007192477.1| NADH dehydrogenase, FAD-containing subunit [Sinorhizobium meliloti
GR4]
gi|429553929|gb|AGA08878.1| NADH dehydrogenase, FAD-containing subunit [Sinorhizobium meliloti
GR4]
Length = 438
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 96/403 (23%), Positives = 163/403 (40%), Gaps = 77/403 (19%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVD 135
+ +PR+ ILG GFGGL A+ L + P +V L+D+ +F+P+LY++ + +
Sbjct: 23 QHRPRVVILGAGFGGLNAAMALR-------RAPVEVTLIDRRNYHLFQPLLYQVATAGLS 75
Query: 136 AWEIAPRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194
+IA +L+ D+V+ + + V G + YD+
Sbjct: 76 PAQIAMPIRRILSRQLNATVLMDKVEAVDTTARYVVTGSRR--------------IPYDY 121
Query: 195 LVLSLGAEPKL-------DVVPGAAEFAFPFSTLEDACRVD-RKLSELERRNFE---RLE 243
L+++ GA D PG T+ DA + R LS E+
Sbjct: 122 LIVATGARHTYFGNDTWEDHAPG-------LKTITDATAIRARILSAFEQAEVTDDPHFR 174
Query: 244 EKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPE 303
K + A+ PTG A+ LS R + V RR+ A V E
Sbjct: 175 RKLLTFAV---VGGGPTGV--ELAGAIAELSRRTI-------VHDFRRIDSSSARVVLVE 222
Query: 304 SG-----AIP---NIAADKNSDKYILEL--QPAIKGL-ESQIFEAD-------LVLWTVG 345
+G A+P + A + ++ +E+ A+ G ES + A+ +LW G
Sbjct: 223 AGERILPAMPPCLSRKAQRQLERLGVEIVFGNAVAGCDESGVRLANGTEIGSACILWAAG 282
Query: 346 SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 405
+ + + G+ DE L GH IF +GD++++ D++GR +P
Sbjct: 283 V------MASRAAKWIGAAADRAGRVIVDERLNPPGHDEIFVIGDTASVMDAAGRAVPGV 336
Query: 406 AQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
A A Q +A + + R PFR+++ G + +GR A
Sbjct: 337 APAAKQMGRYAADAIRGDMAGRRSAPFRYRDYGNLATIGRKAA 379
>gi|403378459|ref|ZP_10920516.1| hypothetical protein PJC66_01395 [Paenibacillus sp. JC66]
Length = 392
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 153/369 (41%), Gaps = 70/369 (18%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
++ ++ LV+++ L+ L +G + IA LL V+ D V+ + P
Sbjct: 28 EEARITLVNKTASHQIITELHRLAAGNIAEKAIALPLEKLLRGKDVELRIDTVQGIDPEA 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
+ GG G+ + YD LV++LG+E +PG E + ++EDA
Sbjct: 88 K-------KVSFGG------GVSMSYDILVVALGSETAFFGIPGLQENSLILKSVEDANH 134
Query: 227 VDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 286
+ + +E R E + K A V TG ++LV G V
Sbjct: 135 IR---AHIESRLKEYAKSKNKADATFVVGGGGLTG----------------IELV-GELV 174
Query: 287 RCI----RRVG-EFE-ASVKQPESGAIPNIAA--------------DKNSDKY-----IL 321
+ R++G F+ SV E+G P+I A +K + +
Sbjct: 175 DTLPETCRKLGVSFQDVSVYCVEAG--PSILAGFAPELVDRARTSLEKRGATFLTGLPVT 232
Query: 322 ELQPAIKGL-ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCV 379
E +P + L + E ++W+ G + N+ + + + RG+A TL
Sbjct: 233 EAKPGVVSLKDGSSIETSTLIWSGGVQG--------NSVVAECGIEVNRGRATVTPTLQS 284
Query: 380 KGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGE 439
HP +F GDS+ + GRP P TAQ+A+Q + G N++A + D P+ F+ G
Sbjct: 285 TSHPEVFLAGDSAVVMSPEGRPYPPTAQLAWQMGETVGANIYAYLRDMPMEEFQPVFSGA 344
Query: 440 MMILGRNDA 448
+ LGR DA
Sbjct: 345 LASLGRKDA 353
>gi|374988415|ref|YP_004963910.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces bingchenggensis BCW-1]
gi|297159067|gb|ADI08779.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Streptomyces bingchenggensis BCW-1]
Length = 399
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 136/315 (43%), Gaps = 45/315 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ ++GGG+ G+ A R+ +DD V L++ FV + L++ ++G DA
Sbjct: 7 VVVIGGGYAGVMAANRM---TQRDDV--TVTLINPRPNFVARLRLHQRVAGTHDA---VV 58
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+ D+L G++ D V + PS+ +V L +G V Y +LV ++G+
Sbjct: 59 NYQDILGK-GIRLVVDTVTRINPSER-------------SVTLATGDTVGYGYLVYAVGS 104
Query: 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTICPTG 261
VPGAAEF +P +TLE+A R+ R + E + + T+ G
Sbjct: 105 GSADPRVPGAAEFGYPIATLEEAQRL-RPVLE--------------AASGSAAVTVVGAG 149
Query: 262 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYIL 321
G AA R+V LV G + A K+ + + D K
Sbjct: 150 PSGIETAAELAERGRRVTLVCGGLLGPYLHPRGRRAVAKRLARLGVTVL--DGPDTKVTA 207
Query: 322 ELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKG 381
+ A++ + + +++ +WTVG +P + + L +A G+ TDETL
Sbjct: 208 VTRDAVRLRDGRELRSEITVWTVGFG--VPDLAVRSG----LSTDALGRLLTDETLTSVD 261
Query: 382 HPRIFALGDSSALRD 396
RI A GDS+A D
Sbjct: 262 DERIVAAGDSAAPSD 276
>gi|289579305|ref|YP_003477932.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter italicus Ab9]
gi|289529018|gb|ADD03370.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter italicus Ab9]
Length = 596
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 89/420 (21%), Positives = 168/420 (40%), Gaps = 73/420 (17%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G G+GG++ A +L +++D +++L+D+ L+E+ ++ +
Sbjct: 6 RIVIVGAGYGGVHAA-KLLHKKFKNDSNIEIILIDKKPYHTLLTDLHEVAGSRIEPDSVR 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDH--LGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ AN V+ D V+ + +G +G YD+L+L
Sbjct: 65 VYLHKIFANKKVEVIIDEVEKIDYEKQSVIGKDGEY----------------NYDYLILG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERR--------------------- 237
+G+EP +PG E+ F TLE A + + E+ R+
Sbjct: 109 IGSEPCDFGIPGVFEYGFTVGTLEAAIKTREHIEEMFRKASVESNAEKKRKMLTFVVAGA 168
Query: 238 NFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297
F +E G + + ++C + + + V+ A ++ + + +F A
Sbjct: 169 GFTGIETAG--ELMEWTKSLCDKYHLDHNDVKIIVIEALN-TILPNLNAKLANKAAKFLA 225
Query: 298 --SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355
V+ + I +A D YI+ L+ K E ++WT G +
Sbjct: 226 KKGVEVLTNAPIVEVAKD-----YIV-LKDGRK------IETKTLIWTCGVQ-------- 265
Query: 356 PNNRLHD---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 412
N+ + L L R + +T+E + G I+ +GD A + G+P+P + A Q
Sbjct: 266 -GNKCVENFGLELGRRSRVQTNEYMQAVGKENIYVIGD-LAYYELDGKPIPQIVETALQS 323
Query: 413 ADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLA 472
A+ N+ A I PF+ + G M+ +G A + GV+L G + + + L
Sbjct: 324 AETVVHNIVADIKGGEKQPFKPKYHGFMVSIGSRYAVAE---LMGVSLTGFLAMAMKHLV 380
>gi|434395238|ref|YP_007130185.1| NADH dehydrogenase (ubiquinone) [Gloeocapsa sp. PCC 7428]
gi|428267079|gb|AFZ33025.1| NADH dehydrogenase (ubiquinone) [Gloeocapsa sp. PCC 7428]
Length = 453
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 145/379 (38%), Gaps = 66/379 (17%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIA-PRFADLLANTGVQFFKDRVKLLCPSDHL 168
+V L+D+ +F+P+LY++ +G + +I+ P + L N + V + P H
Sbjct: 35 EVTLIDKRNFHLFQPLLYQVATGTLSPADISSPLRSVLNRNKNTKVLMGEVVDIDPEQH- 93
Query: 169 GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD 228
V L++ + YD L+++ G + +EFA T+EDA +
Sbjct: 94 ------------KVTLQNQEL-HYDSLIVATGVKHSYFGKDEWSEFAPGLKTVEDALEMR 140
Query: 229 RKL-SELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 287
R++ E E EK V PTG L+ +L +
Sbjct: 141 RRIFVAFEAAEKETDPEKRRAWLTFVIVGGGPTGVE---------LAGAIAELAYSTLKK 191
Query: 288 CIRRVGEFEASV------------KQPESGA------------------IPNIAADKNSD 317
R + EA + PE A + NIA D +
Sbjct: 192 DFRNIDTAEAKILLLEGMDRLLPPYAPELSAKAAKSLQQLGVTVQTKTLVTNIADDIVTT 251
Query: 318 KYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETL 377
K +G E A VLW G K P E R L+ G+ + L
Sbjct: 252 K---------QGDEVAQIAAKTVLWAAGVKAS-PMGETLAKRT-GAQLDRAGRVIVEPDL 300
Query: 378 CVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNL 437
+ GHP IF +GD + +G+PLP A VA Q+ + + + ++ L PF + +
Sbjct: 301 SIPGHPNIFVVGDLANFSHQNGKPLPGVAPVAMQEGQYVAALIKQRLQEKTLPPFSYLDR 360
Query: 438 GEMMILGRNDAAVSPSFVE 456
G + ++GRN A V FV+
Sbjct: 361 GSLAVIGRNAAVVDFGFVK 379
>gi|418710585|ref|ZP_13271355.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Grippotyphosa str. UI 08368]
gi|410769174|gb|EKR44417.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Grippotyphosa str. UI 08368]
gi|456972328|gb|EMG12753.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Grippotyphosa str. LT2186]
Length = 422
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/432 (18%), Positives = 172/432 (39%), Gaps = 50/432 (11%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ + ++ ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 ESNQKKVVVIGAGFGGLQAVKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + K+ +L + + + + YD+L
Sbjct: 58 PADIAIPTRSLVGES-----KNVTVVLGEATKIDLKTKTVYYQNTST--------NYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI-NVE 254
+LS GA ++ L+DA ++ KL +FE+ E G + + ++
Sbjct: 105 ILSAGARSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKSLL 160
Query: 255 TTICPTGTPGNREAALKV--LSARKVQLVLGYFVRCIRRVGEFEASVK-----QPESGAI 307
+ G P E A + LS + ++ + ++ EAS + P G
Sbjct: 161 NYVIIGGGPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLIEASPRLLMTFDPSLGEF 220
Query: 308 PNIAADKN-----SDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH- 361
++ + ++++ LE ++ V+W G + N +
Sbjct: 221 TKKRLERRGVEVLTGTRVIDINERGVQLEGKMIPTQTVIWAAGVQA---------NSIAA 271
Query: 362 --DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
+ L+ G+ DE ++GH +F +GD ++ RPLP + VA QQ +
Sbjct: 272 TLGVTLDRGGRVIVDEFCNIEGHSEVFVIGDIASYSKGLERPLPGVSPVAMQQGRYVASL 331
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ + ++ PF + + G M +GR DA ++ + G G A +L
Sbjct: 332 IQNDLKNKKRKPFHYIDKGSMATIGRTDAVAQVGILK---MKGLFGWLAWLFVHLFYQVG 388
Query: 480 DEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 389 FKNKITILITWV 400
>gi|359444905|ref|ZP_09234668.1| NADH dehydrogenase [Pseudoalteromonas sp. BSi20439]
gi|358041276|dbj|GAA70917.1| NADH dehydrogenase [Pseudoalteromonas sp. BSi20439]
Length = 430
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 153/359 (42%), Gaps = 40/359 (11%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
+ +LL+D++ ++KP+L+E+ +G +DA ++ A+ + ++ C D
Sbjct: 32 QHANILLIDKNRTHIWKPLLHEVATGSIDADLDGVVYS---AHAAKHHYNFQLGTFCNLD 88
Query: 167 HLGVNGPMACTH---GGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLED 223
+ ++ + G +L + V YD LV+++G+ PG E F + +
Sbjct: 89 NNNKTITLSSLNDELGHQILPKR--TVHYDHLVIAIGSVSNDFNTPGIKEHCFYLDSNQQ 146
Query: 224 ACRVDRKLSELERRNFERL-EEKGIVQAINVETTICPTGTPGNREAA--------LKV-- 272
A R L + NF RL ++ + ++N+ I G G +A LK+
Sbjct: 147 AERFQHALLD----NFTRLHQDDDPLHSLNI--AIVGGGATGVELSAELYHVSDLLKIYG 200
Query: 273 ---LSARKVQL-VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIK 328
+SA+++ + ++ R + + E AS + E + I + K E K
Sbjct: 201 LTNMSAKRLHIHLIEAGPRILPALSERIASSAKRELLRLGVIVRENTQVKQATEHGFITK 260
Query: 329 GLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIF 386
G E AD+++W G V+ P+ L L Q + ++ L P+I+
Sbjct: 261 GDEQ--INADIMVWAAG-------VKAPDFIKELDIFELTRNNQIKVNDYLQSNLDPQIY 311
Query: 387 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
LGD A G +P AQ A Q A NL A + ++PL F + + G ++ L R
Sbjct: 312 VLGDCCAFTQDDGTQVPPRAQSAHQMAQCVEKNLIATLREQPLKKFEYNDHGSLVNLSR 370
>gi|414173433|ref|ZP_11428196.1| hypothetical protein HMPREF9695_01842 [Afipia broomeae ATCC 49717]
gi|410892085|gb|EKS39881.1| hypothetical protein HMPREF9695_01842 [Afipia broomeae ATCC 49717]
Length = 429
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 98/425 (23%), Positives = 171/425 (40%), Gaps = 43/425 (10%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P I I+G GFGGL A L + ++ +VDQ +F+P+LY++ + + EI
Sbjct: 12 PHIVIVGAGFGGLEAARGLA------EAPVRITIVDQRNHHLFQPLLYQVATATLATSEI 65
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
A L V+ K+ LL +GVN T VLL+ + +D L+L+
Sbjct: 66 AWPVRHL-----VRRQKNVTTLLGSV--VGVN-----TQAKQVLLDGEEPIAFDTLILAT 113
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL------SELERRNFERLEEKGIV----- 248
GA +A TLEDA ++ R++ +E E ER + V
Sbjct: 114 GARHAYFGHDEWEPYAPGLKTLEDATKIRRRILAAFEQAEWETDPAERAKFLTFVIIGAG 173
Query: 249 -QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI 307
+ + TI R+ + R ++VL R + F + A+
Sbjct: 174 PTGVELAGTIAELARDTLRDE-FRNFDTRSARVVL--IEAGPRILSSFSEDLSDYAQRAL 230
Query: 308 PNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA 367
+ + + + L + A ++W G P LH +P +
Sbjct: 231 TRLGVEVKLGHAVSKCGEGGVELGGEFLPAKTIIWAAGVA-----ASPAAEWLH-VPADR 284
Query: 368 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 427
G+ + L GHP IF +GD++ + + G+ +P A A Q+ + + + R
Sbjct: 285 AGRVLVEPDLTAPGHPDIFVIGDAAHVESADGKLVPGVAPAAKQEGQYVARRIMERLRGR 344
Query: 428 -PLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKV 486
P F ++N G + +G+ A V +++ L G + +A++ L +RL V
Sbjct: 345 NPGERFAYKNAGNLATIGKRAAIVDFGWIK---LKGRLAWWMWGVAHIFFLIGLRNRLAV 401
Query: 487 GVSWL 491
++WL
Sbjct: 402 AMNWL 406
>gi|258650645|ref|YP_003199801.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Nakamurella multipartita DSM 44233]
gi|258553870|gb|ACV76812.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Nakamurella multipartita DSM 44233]
Length = 446
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 366 NARGQAETDETLCVKGHPRIFALGDSSAL------RDSSG-RPL-PATAQVAFQQADFAG 417
++G+ D+ L V H ++A+GD++A+ +D G RPL P TAQ A +QA
Sbjct: 284 TSKGRLVVDKVLRVPQHHDVYAIGDAAAVPDLTKPQDEHGQRPLCPPTAQHAMRQATAVA 343
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRL 477
N+ A ++ RPL P+R +LG ++ LG DAA +P G L G + + +L L
Sbjct: 344 RNIVADLDGRPLRPYRHHDLGLVVDLGGPDAAATPV---GFRLRGRLAKAVTLGYHLYAL 400
Query: 478 PTDEHRLKVGVSW 490
PT + R++V V W
Sbjct: 401 PTGKRRIRVAVDW 413
>gi|254424493|ref|ZP_05038211.1| FAD dependent oxidoreductase, putative [Synechococcus sp. PCC 7335]
gi|196191982|gb|EDX86946.1| FAD dependent oxidoreductase, putative [Synechococcus sp. PCC 7335]
Length = 466
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 156/382 (40%), Gaps = 71/382 (18%)
Query: 110 QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLA-NTGVQFFKDRVKLLCPSDHL 168
+V L+D+ +F+P+LY++ +G + A +I+ +L+ VQ V + P+ +
Sbjct: 45 KVTLIDKRNFHLFQPLLYQVATGGLSAGDISSPLRSVLSKQKNVQVLMGEVTGIEPTTQI 104
Query: 169 GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL-------DVVPGAAEFAFPFSTL 221
V L++G V YD L+++ G+ D+ PG T+
Sbjct: 105 -------------VTLKNGETVSYDSLIVATGSSHHYFGKDEWSDIAPG-------MKTI 144
Query: 222 EDACRVDRKLSELERRNFERLE-EKGIVQAINVETTICPTGTPGNREAA----------- 269
EDA V R++ FE E E V+ + T G P E A
Sbjct: 145 EDALEVRRRIF----LAFEAAEKESDPVRREALLTFFIVGGGPTGVELAGALAELAYETL 200
Query: 270 ---LKVLSARKVQLVLGYFVRCIRRV-----GEFEASVKQPESGAIPNIAADKNSDKYIL 321
+ ++ + ++VL + + RV G+ AS K ++ + + ++ +
Sbjct: 201 REDFRSINPGETKVVL---LEGMDRVLPPYPGDLSASAKN----SLEKLGVEVRTNTLVT 253
Query: 322 ELQPAIKGLES----QIFEADLVLWTVGSKPLLPHVEPPNNRLHD---LPLNARGQAETD 374
++ I L++ + +A VLW G K P + D L+ G+
Sbjct: 254 NIEGDIVTLKNGDSIEKVQAFTVLWAAGIK-----ASPMGKAIADQTGAELDRIGRIIVG 308
Query: 375 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRF 434
L V G I+ GD + +S PLP TA A QQ + ++ + + + PF +
Sbjct: 309 PDLSVPGCSNIYIAGDLAHYAHNSESPLPGTASTAMQQGSYLADSIQRRLEGQSVSPFEY 368
Query: 435 QNLGEMMILGRNDAAVSPSFVE 456
+N G M ++GRN+A F +
Sbjct: 369 KNKGSMAVIGRNEAVADLGFAK 390
>gi|336176824|ref|YP_004582199.1| NADH dehydrogenase (ubiquinone) [Frankia symbiont of Datisca
glomerata]
gi|334857804|gb|AEH08278.1| NADH dehydrogenase (ubiquinone) [Frankia symbiont of Datisca
glomerata]
Length = 499
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 103/450 (22%), Positives = 178/450 (39%), Gaps = 84/450 (18%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ P I ++GGG+ G+YTALRL+ + Q + V +V+ + ++P L E +G ++
Sbjct: 5 QPPHILVVGGGYVGMYTALRLQRRLRQGEAT--VTVVEPNSYMTYQPFLPEAAAGNLEPR 62
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGP-MACTHGGTVLLESGLIVEYDWLV 196
+ +L G + V + + + P H + YD LV
Sbjct: 63 HVVVPLRRVL--NGCRVVSGSVTGINHAQRVAYIAPNQGAPHD----------LHYDILV 110
Query: 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE------------LERR------- 237
G+ + +PG AE F ++ +A + K+ E L RR
Sbjct: 111 ACPGSIARTLPIPGLAERGIGFKSVAEAIHIRNKVIERMDAAASSTDPQLRRRALTFVFI 170
Query: 238 --NFERLEEKGIVQAINVETTIC---PTGTPGNREAALKVLSAR---KVQLVLGYFVRCI 289
F +E I + ++ C P +P + + S R +V +G +
Sbjct: 171 GGGFAGIE--AIAELEDMARDACKFYPELSPSDMRWVMVEASGRVLPEVSPAMGLY---- 224
Query: 290 RRVGEFEASVKQPESGAIP---NIAADKNSDKYILELQPAIKGLES-QIFEADLVLWTVG 345
++KQ E I N D +++ L+S + F+A+ ++WT G
Sbjct: 225 --------TLKQLEHRGIEMKINTRVKSLVDGHVV--------LDSGEEFDAETIVWTAG 268
Query: 346 SK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD---SSGR 400
K PLL + DLPL+ RG+ L V G + + GD +A+ D G
Sbjct: 269 VKAHPLLANT--------DLPLDDRGRIRATAFLQVDGVEQAWTAGDCAAVPDLTKGEGV 320
Query: 401 PLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTL 460
+AQ A +QA N+ A + P+ P+ + G + LG + V G+ L
Sbjct: 321 TTGPSAQHAVRQAKVLADNILADLRAEPIAPYEHKYAGSVASLGLHKGVAD---VYGMKL 377
Query: 461 DGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
G + +L R+PT +++V W
Sbjct: 378 RGWPAWLMHRTYHLSRVPTFNRKVRVLADW 407
>gi|417772723|ref|ZP_12420611.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Pomona str. Pomona]
gi|418681090|ref|ZP_13242324.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Pomona str. Kennewicki LC82-25]
gi|418699098|ref|ZP_13260065.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Bataviae str. L1111]
gi|418704810|ref|ZP_13265677.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Hebdomadis str. R499]
gi|418712849|ref|ZP_13273578.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. UI 08452]
gi|421118511|ref|ZP_15578848.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Canicola str. Fiocruz LV133]
gi|400327193|gb|EJO79448.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Pomona str. Kennewicki LC82-25]
gi|409945400|gb|EKN95416.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Pomona str. Pomona]
gi|410009870|gb|EKO68024.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Canicola str. Fiocruz LV133]
gi|410761958|gb|EKR28129.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Bataviae str. L1111]
gi|410765423|gb|EKR36123.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Hebdomadis str. R499]
gi|410790618|gb|EKR84310.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. UI 08452]
gi|455668189|gb|EMF33435.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Pomona str. Fox 32256]
Length = 422
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/432 (18%), Positives = 172/432 (39%), Gaps = 50/432 (11%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ + ++ ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 ESNQKKVVVIGAGFGGLQAVKKLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + K+ +L + + + + YD+L
Sbjct: 58 PADIAIPTRSLVGES-----KNVTVVLGEATKIDLKTKTVYYQNTST--------NYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI-NVE 254
+LS GA ++ L+DA ++ KL +FE+ E G + + ++
Sbjct: 105 ILSAGARSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKSLL 160
Query: 255 TTICPTGTPGNREAALKV--LSARKVQLVLGYFVRCIRRVGEFEASVK-----QPESGAI 307
+ G P E A + LS + ++ + ++ EAS + P G
Sbjct: 161 NYVIIGGGPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLIEASPRLLMTFDPSLGEF 220
Query: 308 PNIAADKN-----SDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH- 361
++ + ++++ LE ++ V+W G + N +
Sbjct: 221 TKKRLERRGVEVLTGTRVIDINERGVQLEGKMIPTQTVIWAAGVQA---------NSIAA 271
Query: 362 --DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
+ L+ G+ DE ++GH +F +GD ++ RPLP + VA QQ +
Sbjct: 272 TLGVTLDRGGRVIVDEFCNIEGHSEVFVIGDIASYSKGLERPLPGVSPVAMQQGRYVASL 331
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ + ++ PF + + G M +GR DA ++ + G G A +L
Sbjct: 332 IQNDLKNKKRKPFHYIDKGSMATIGRTDAVAQVGILK---MKGLFGWLAWLFVHLFYQVG 388
Query: 480 DEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 389 FKNKITILITWV 400
>gi|354604988|ref|ZP_09022977.1| hypothetical protein HMPREF9450_01892 [Alistipes indistinctus YIT
12060]
gi|353347567|gb|EHB91843.1| hypothetical protein HMPREF9450_01892 [Alistipes indistinctus YIT
12060]
Length = 430
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 100/406 (24%), Positives = 166/406 (40%), Gaps = 68/406 (16%)
Query: 70 QTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL 129
+T P ++ R+ ++GGGF GL +L QV+LVDQ+ +FKP+LY++
Sbjct: 2 KTLNIPQTEQKRVVVVGGGFAGLTLVQKLRK------SNYQVVLVDQNNFHLFKPLLYQV 55
Query: 130 LSGEVDAWEIAPRFADLL-ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL 188
S +D +IA F + V F R+ + P ++L L S
Sbjct: 56 ASAGLDESDIAFPFRRVFQTRRNVNFRLGRMLRVKPEENL--------------LETSTG 101
Query: 189 IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELERRNFERLEEK-- 245
V YD+LV++ G P + + ++P S + DA R+ + L LE+ EE+
Sbjct: 102 SVTYDYLVIATGCVPNFFGMDHIEQRSWPMSDIGDALRIRNSVLRNLEKAVIATSEEERN 161
Query: 246 ---------GIVQAINV-------ETTICPTGTPGNREAALKVLSARKVQLVLGYF---- 285
G + + + I P PG +++ + +L
Sbjct: 162 ALLNIVIVGGGASGVEIAGALAEMRSYIVPRDYPGVNISSMHIYLVEGRDKLLATMSPET 221
Query: 286 -VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 344
C++ +++ + N A D + I G + I +L+ WT
Sbjct: 222 SSDCLK-------VLEKKGVNVMLNTAVKDYQDNRV------IFGDGTSILSGNLI-WTS 267
Query: 345 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP--L 402
G K VE N + RG+ TD V+G IFA+GD A+ D P
Sbjct: 268 GVKS--EAVEGIGNSEKE----RRGRILTDRYNRVQGFDNIFAIGD-IAITDDPQYPAGY 320
Query: 403 PATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
P A+VA Q + NL A +P+ P+ ++++G + +GRN A
Sbjct: 321 PQLARVAISQGERIAANLIAVSKGKPMEPYEYRSIGVLATVGRNRA 366
>gi|298249569|ref|ZP_06973373.1| NADH dehydrogenase (ubiquinone) [Ktedonobacter racemifer DSM 44963]
gi|297547573|gb|EFH81440.1| NADH dehydrogenase (ubiquinone) [Ktedonobacter racemifer DSM 44963]
Length = 436
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 90/381 (23%), Positives = 152/381 (39%), Gaps = 35/381 (9%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
PR+ I+G GF GL AL L + + ++D++ +F+P+LY++ + + EI
Sbjct: 24 PRVVIIGAGFAGLKAALHLR------NAPVHLTVIDRTNHHLFQPLLYQVATATLSPGEI 77
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
+ +L + R + ++ GV+ +L E V YD+LV++
Sbjct: 78 SSPIRHVLK-------RQRNAEVIMAEVTGVD----TVQKRVLLGERS--VPYDYLVVAT 124
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFERLEEKGIVQAINVETTIC 258
GA K A ++EDA + KL E ER E+ V
Sbjct: 125 GAREKYFEHDEWKPLAPGLKSIEDARAIRHKLLHAFETAEQERDVERQKELLTFVIVGAG 184
Query: 259 PTGTP---GNREAALKVLSA--RKVQLVLGYFVRCIRR---VGEFEASVKQPESGAIPNI 310
PTG E A KVL++ R + L V + F + + +
Sbjct: 185 PTGVEMAGAIAEVARKVLTSEFRHIDPSLARIVLIEAHEWVLSAFPEKLSHRAERELRRL 244
Query: 311 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQ 370
+ + ++ ++ + +A V WT G + P N L D+ + G+
Sbjct: 245 GVEICTKTFVTQIDERGVVANGERIQACTVFWTAGVQ-----ASPAANWL-DVEADGAGR 298
Query: 371 AETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLL 430
E L V G +F +GD++A GR LP A VA QQ + + A + R +
Sbjct: 299 VPVAEDLSVPGLENVFVIGDTAAC-TWRGRLLPGVAPVAMQQGVYVARLIAARVAGRAMQ 357
Query: 431 PFRFQNLGEMMILGRNDAAVS 451
PF + + G + +GR A +
Sbjct: 358 PFHYVDKGNLATIGRGFAVLQ 378
>gi|440696277|ref|ZP_20878760.1| pyridine nucleotide-disulfide oxidoreductase [Streptomyces
turgidiscabies Car8]
gi|440281517|gb|ELP69110.1| pyridine nucleotide-disulfide oxidoreductase [Streptomyces
turgidiscabies Car8]
Length = 459
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 112/455 (24%), Positives = 186/455 (40%), Gaps = 82/455 (18%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQV--LLVDQSERFVFKPMLYELLSGEV 134
K++ RI ++GGG+ G+YTALRL+ + Q+ K+ QV +V ++P L E +G +
Sbjct: 3 KERARILVVGGGYVGMYTALRLQRKLQQELKQGQVDITVVTPDPYMTYQPFLPEAAAGSI 62
Query: 135 DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE--- 191
+ +L DR +++ + T E G +
Sbjct: 63 SPRHVVVPLRRVL---------DRCRIVVGEVTAIDHAKRTATVTTLATTEEGTGAQQLT 113
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI 251
YD LVL+ G+ + +PG AE A F T+E+A + RN +++ +
Sbjct: 114 YDELVLAPGSVSRTLPIPGLAEHAIGFKTVEEAIGL---------RNH-------VIEQM 157
Query: 252 NVETTICPTGTPGNREAALK---VLSARKVQLVLGYFVRCIRRVGEFEASVKQPE----- 303
++ ++ T P R+AAL V LG R + +VK PE
Sbjct: 158 DIASS---TRDPAIRDAALTFVFVGGGYAGVEALGELEDMARYAARYYHNVK-PEDMKWI 213
Query: 304 ----SGAI-PNIAAD-----------KNSDKYILELQPAIKGLESQI--------FEADL 339
SG I P + + +N D + L+ + +I F
Sbjct: 214 LVEASGRILPEVGEEMGKYTVTELRRRNID---VRLETRLDSCADRIAVLSDGARFPTRT 270
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSS- 398
V+WT G KP P DLPLN RG+ + L ++G +A GD++A+ D +
Sbjct: 271 VVWTAGVKPH------PLLAATDLPLNERGRLKCTAELRIEGTTHAWAAGDAAAVPDVTA 324
Query: 399 ---GRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFV 455
G+ AQ A +QA G N+ ++ PL + + +G + LG + + V
Sbjct: 325 AEPGKETAPNAQHAVRQAKALGDNIAHSLRGEPLETYSHRYVGSVASLGLHKGV---AHV 381
Query: 456 EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSW 490
G L G ++ +L R+PT + +V W
Sbjct: 382 YGRKLKGYPAWFMHRVYHLSRVPTFNRKARVLAEW 416
>gi|418695893|ref|ZP_13256905.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira kirschneri
str. H1]
gi|421108486|ref|ZP_15569023.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira kirschneri
str. H2]
gi|409956347|gb|EKO15276.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira kirschneri
str. H1]
gi|410006335|gb|EKO60094.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira kirschneri
str. H2]
Length = 422
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/432 (18%), Positives = 172/432 (39%), Gaps = 50/432 (11%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ + ++ ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 ESNQKKVVVIGAGFGGLQAVKQLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + K+ +L + + + + YD+L
Sbjct: 58 PADIAIPTRSLVGES-----KNVTVVLGEATKIDLKTKTVYYQNTST--------NYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI-NVE 254
+LS GA ++ L+DA ++ KL +FE+ E G + + ++
Sbjct: 105 ILSAGARSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKSLL 160
Query: 255 TTICPTGTPGNREAALKV--LSARKVQLVLGYFVRCIRRVGEFEASVK-----QPESGAI 307
+ G P E A + LS + ++ + ++ EAS + P G
Sbjct: 161 NYVIIGGGPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLIEASPRLLMTFDPSLGEF 220
Query: 308 PNIAADKN-----SDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362
++ + ++++ LE ++ V+W G + N +
Sbjct: 221 TKKRLERRGVEVLTGTRVIDINERGVQLEGKMIPTQTVIWAAGVQA---------NSIAS 271
Query: 363 ---LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
+ L+ G+ DE ++GH +F +GD ++ RPLP + VA QQ +
Sbjct: 272 TLGVTLDRGGRVIVDEFCNIEGHSEVFVIGDIASYSKGLERPLPGVSPVAMQQGRYVASL 331
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ + ++ PF + + G M +GR DA ++ + G G A +L
Sbjct: 332 IQNDLKNKKRKPFHYIDKGSMATIGRTDAVAQVGILK---MKGLFGWLAWLFVHLFYQVG 388
Query: 480 DEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 389 FKNKITILITWV 400
>gi|254361833|ref|ZP_04977968.1| NADH dehydrogenase [Mannheimia haemolytica PHL213]
gi|261491621|ref|ZP_05988204.1| NADH dehydrogenase [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|452745344|ref|ZP_21945179.1| NADH dehydrogenase [Mannheimia haemolytica serotype 6 str. H23]
gi|153093368|gb|EDN74364.1| NADH dehydrogenase [Mannheimia haemolytica PHL213]
gi|261312747|gb|EEY13867.1| NADH dehydrogenase [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|452086493|gb|EME02881.1| NADH dehydrogenase [Mannheimia haemolytica serotype 6 str. H23]
Length = 426
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 144/355 (40%), Gaps = 44/355 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
+K +V+L+D++ ++KP+L+E+ +G +D A + N +F + + +
Sbjct: 28 QKAKVVLIDRNATHLWKPLLHEVATGTIDEGTDALSYRAHAKNHSFEFQQGTLVAVDREK 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ ++ E + YD LV+++G++ G AE E A
Sbjct: 88 KTVSLAPIYNDQNQLLVKERH--ISYDKLVIAIGSKSNDFGTKGVAENCIFLDGSEQAKD 145
Query: 227 VDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV----- 281
+++ EL R F E K +V+ I G G LSA +V
Sbjct: 146 FQKRMMELFLR-FSHSENK------DVKIAIVGGGATGIE------LSAELYHVVKNLNS 192
Query: 282 --LGYFVRCIRRVGEFEASVKQ----PESGAIPNIAADKNSD------KYILELQPAIKG 329
G R +V EA + PE ++ K + I E +P G
Sbjct: 193 YGFGKLNRASLKVTLIEAGPRLIPALPEKVSVSAFHELKKAGVSVRLGTMITEARP--DG 250
Query: 330 LESQI---FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIF 386
L +++ EAD+++W G K P R N Q E +TL +F
Sbjct: 251 LMTRLGEKIEADIMVWAAGVKA------PEITREFGFETNRLNQIEIKDTLQTTVDESVF 304
Query: 387 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMM 441
+GD ++L G+P+P AQ A Q A G N+ A I + + PFRF + G ++
Sbjct: 305 VIGDCASL-IQDGKPIPPRAQAAHQMATRCGKNIVALIEGKEMKPFRFNDKGSLL 358
>gi|238927409|ref|ZP_04659169.1| NADH dehydrogenase [Selenomonas flueggei ATCC 43531]
gi|238884691|gb|EEQ48329.1| NADH dehydrogenase [Selenomonas flueggei ATCC 43531]
Length = 427
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 108/440 (24%), Positives = 171/440 (38%), Gaps = 61/440 (13%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
+ + I+G GFGG++ A L + Q+ LVD+ +F+P+LY++ + + A E
Sbjct: 4 QKHVVIVGAGFGGVHLAKELAK------ENVQITLVDRHNYHLFQPLLYQVSTAVLSASE 57
Query: 139 IA-PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
IA P A N V FF + GV+ G VLL + YD+LVL
Sbjct: 58 IAYPTRAFFRNNNNVNFFMAKAT--------GVD------QGRRVLLTDHGEISYDYLVL 103
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRV-DRKLSELER--------RNFERLEEKGIV 248
+ G A ++ TL++A + + E ER ERL V
Sbjct: 104 AAGGTTNFFGNESVARNSYGMKTLQEAIALRGHIVHEFERASKKTDPSHTEERLRHLNFV 163
Query: 249 QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF----VRCIRRVGEFEASVKQPES 304
T I G A ++++ K + F V + +G V
Sbjct: 164 IVGGGATGIEMAG------AIVELIDVFKKEFHTIDFSEVHVTLLEAMGSVLPMVPPDLQ 217
Query: 305 GAIPNIAADKNSDKYILELQPAIKG-----LESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
++ K D + A G + +I V+W G + +
Sbjct: 218 QHTIDVLRKKGVDVRLNTAVTAYDGNDLVLKDGEIIPTKTVIWAAGVRA--------QDF 269
Query: 360 LHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
+ D ++ G+ +E L VKG +FA+GD + + + RPLP A VA Q+A
Sbjct: 270 IKDCGGEVDRAGRVIVEENLLVKGSDCVFAIGDCANFQHGTERPLPTVAPVATQEAMQVK 329
Query: 418 WNLWAAINDRP---LLPFRFQNLGEMMILGRNDAAVS---PSFVEGVTLDGPIGHSARKL 471
N+ A I + L F + +LG M +GR +A ++ P + G A L
Sbjct: 330 TNIMALIAGKTPDQLGKFVYHDLGAMATIGRGEAVMNGPMPVLGFNIKASGFFAWFAWML 389
Query: 472 AYLIRLPTDEHRLKVGVSWL 491
+LIRL V V W+
Sbjct: 390 VHLIRLAGRYADFTVSVKWI 409
>gi|300788029|ref|YP_003768320.1| NADH dehydrogenase [Amycolatopsis mediterranei U32]
gi|384151458|ref|YP_005534274.1| NADH dehydrogenase [Amycolatopsis mediterranei S699]
gi|399539912|ref|YP_006552574.1| NADH dehydrogenase [Amycolatopsis mediterranei S699]
gi|299797543|gb|ADJ47918.1| NADH dehydrogenase [Amycolatopsis mediterranei U32]
gi|340529612|gb|AEK44817.1| NADH dehydrogenase [Amycolatopsis mediterranei S699]
gi|398320682|gb|AFO79629.1| NADH dehydrogenase [Amycolatopsis mediterranei S699]
Length = 402
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 144/325 (44%), Gaps = 48/325 (14%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+ ++ ++GGG+ G+ A RL + +DD V LV+ FV + L++L+ G DA
Sbjct: 3 RNTQVVVIGGGYAGVMAANRL---MLRDDVT--VTLVNPRPDFVHRVRLHQLVGGSDDA- 56
Query: 138 EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVL 197
+ D+LA +RV+L+ +G+ + +V L +G + YD+L+
Sbjct: 57 --VVAYQDVLA--------ERVRLV-----VGIVTRIDAAER-SVTLAAGGTLGYDYLIY 100
Query: 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTI 257
++G+ VPGAAEFA P STLEDA R+ L + G
Sbjct: 101 AVGSGSSEPSVPGAAEFAHPISTLEDAQRLRPILDAAPATAAVTVVGAG----------- 149
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 317
PTG E A + R+V LV G + + K+ + I D +
Sbjct: 150 -PTGIETAAELAEQ---GRRVTLVCGGVLGPYLHTRGRRSVAKRLAKLGVTVI--DGSHA 203
Query: 318 KYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETL 377
K + A++ + + +++ +WT G +P + + L ++A G+ TDETL
Sbjct: 204 KVTAMTRDAVRLADGRELPSEVTVWTAGFG--VPDLAVRSG----LSVDAVGRLLTDETL 257
Query: 378 CVKGHPRIFALGDSSALRDSSGRPL 402
RI A GDS+A SG PL
Sbjct: 258 TSVDDARIVAAGDSAA---PSGLPL 279
>gi|348617850|ref|ZP_08884384.1| NADH dehydrogenase [Candidatus Glomeribacter gigasporarum BEG34]
gi|347816794|emb|CCD29034.1| NADH dehydrogenase [Candidatus Glomeribacter gigasporarum BEG34]
Length = 433
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 143/363 (39%), Gaps = 35/363 (9%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
KK +++L D+ V+KP+L+E+ +G +D + +A G +F L D
Sbjct: 28 KKAKIVLADRYPVHVWKPLLHEVAAGSMDPFAHQLEYAAQARWHGFEFQLGECIAL---D 84
Query: 167 HLGVNGPMACTHG--GTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDA 224
+A H G LL + ++YD LV+++G+ V GA ++A T A
Sbjct: 85 RSAKTITLAAAHDEEGIELLPA-RTLKYDTLVIAIGSTTNFFNVSGAQQYAIALDTTAQA 143
Query: 225 CRVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGY 284
R R+L R + A ++ I G G L + Q + Y
Sbjct: 144 ERFRRRLIATCMRAHTHRSSRASGTAARIQIAIVGGGATG---VELSAELRQTAQTLAAY 200
Query: 285 FVRCI---------------RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIK 328
+ + R + V + + + + + +++ E+ P ++
Sbjct: 201 GIHALEPNRDIGITVIESGPRILSALPERVSTETAVLLKKLGIELSVGEHVTEVLPNTLR 260
Query: 329 GLESQIFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIF 386
+ ADL++W G ++ P +L L RGQ + TL + IF
Sbjct: 261 TASGKTLSADLIVWAAG-------IQAPAILQQLDGLATTPRGQLKVRMTLQTENDDDIF 313
Query: 387 ALGD-SSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
A GD +S + +P AQ A QQA F L + + L F +++ G ++ LGR
Sbjct: 314 AFGDCASCPWPAQHSAVPPRAQAAHQQASFLSRGLMRRLAGKSLPAFSYRDFGSLVSLGR 373
Query: 446 NDA 448
A
Sbjct: 374 FGA 376
>gi|356566086|ref|XP_003551266.1| PREDICTED: probable NADH dehydrogenase-like [Glycine max]
Length = 506
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 107/457 (23%), Positives = 177/457 (38%), Gaps = 71/457 (15%)
Query: 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAW 137
+KPR+ +LG G+ G L+ V+ ++ V VF P+L G ++
Sbjct: 68 EKPRVVVLGSGWAGCRLMKGLDPRVYD------IVCVSPRNHMVFTPLLASTCVGTLEFR 121
Query: 138 EIAPRFADLLA----NTGVQFFKDRVKLLCPSDHLGVNGPMAC---THGGTVLLESGLIV 190
+A + G FF + +H+ + C T G + +
Sbjct: 122 SVAEPIGRIQPAISREPGSYFFLANCTQIDAHNHM-----VHCETVTEGVETIAPWKFTI 176
Query: 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-------------SELERR 237
YD LV++LG++P + G E A + A + RKL E ++R
Sbjct: 177 SYDKLVIALGSQPSTFGIQGVKEHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKQR 236
Query: 238 NFERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLV-----LGYFVRCIRRV 292
+ G + + T R+ + V +V L+ L F +RR
Sbjct: 237 LLHCVVVGGGPTGVEFSGELSDFITRDVRQRYVHVKDYIRVTLIEANEILSSFDDRLRRY 296
Query: 293 GEFEASVKQPESGA--IPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350
A+ + +SG + I D K +L + L++W+ G PL
Sbjct: 297 ----ATKQLTKSGVRLVRGIVKDVKPQKIVLN--------DGSEVPYGLLVWSTGVGPL- 343
Query: 351 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGR-PLPATAQVA 409
P + DLP G+ DE L V +F++GD S +S+GR LPA AQVA
Sbjct: 344 -----PIIQSLDLPKAPGGRIGVDEWLRVSSVQDVFSIGDCSGFVESTGRQTLPALAQVA 398
Query: 410 FQQADF----------AGWNLWAAINDRPLL-PFRFQNLGEMMILGRNDAAV---SPSFV 455
+Q + AG + + PF +++LG M +GR A V
Sbjct: 399 ERQGKYLAALLNKIGKAGAGHANSAKEIEFGDPFVYRHLGSMASIGRYKALVDLRQNKEA 458
Query: 456 EGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLT 492
+G+ L G + + AY+ R+ + +R V V+W+T
Sbjct: 459 KGLALAGFLSFFIWRSAYITRVISWRNRFYVFVNWIT 495
>gi|420185267|ref|ZP_14691362.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM040]
gi|394255001|gb|EJD99961.1| NADH dehydrogenase-like protein YumB family protein [Staphylococcus
epidermidis NIHLM040]
Length = 402
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 97/400 (24%), Positives = 162/400 (40%), Gaps = 69/400 (17%)
Query: 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDA 136
+ + ++ +LG G+ GL T +L+ + D ++ L++++E L+E +G ++
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSAD--AAEITLINKNEYHYESTWLHEASAGTIN- 59
Query: 137 WEIAPRFADLLANTGVQFFKDRVKLLCPS-DHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+ DLL KD+V + + N T G + ++D L
Sbjct: 60 ------YEDLLYPVEKTVNKDKVNFVVAEVTKIDRNAKRVETDKG--------VYDFDIL 105
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEK-----GIVQA 250
V+SLG + + G E AF + + ++ R + E + N+ +EK I+
Sbjct: 106 VVSLGFVSETFGIDGMKEHAFQIENVLTSRKLSRHI-EDKFANYAASKEKDDKDLSILVG 164
Query: 251 INVETTICPTGTPGNR--------------------EAALKVLSARKVQLVLGYFVRCIR 290
T I G +R EAA K+L LV Y V+ +
Sbjct: 165 GAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCVEAAPKMLPMFSDDLV-SYAVKYLE 223
Query: 291 RVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 349
G EF+ A P +A N +++E+ E Q EA +WT G +
Sbjct: 224 DRGVEFKI--------ATPIVAC--NEKGFVVEVNG-----EKQQLEAGTSVWTAGVRG- 267
Query: 350 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQV 408
H+ + RG+ + L ++GH IF +GD SA + RPLP TAQ+
Sbjct: 268 -SHLMEES-----FEGVKRGRIINKQDLTIEGHNDIFVIGDCSAFIPAGEERPLPTTAQI 321
Query: 409 AFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDA 448
A QQ + N+ +N F++ N G + LG ND
Sbjct: 322 AMQQGEHTASNIKRLLNGESTQDFQYVNRGTVCSLGANDG 361
>gi|334335766|ref|YP_004540918.1| NADH dehydrogenase [Isoptericola variabilis 225]
gi|334106134|gb|AEG43024.1| NADH dehydrogenase [Isoptericola variabilis 225]
Length = 432
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 153/371 (41%), Gaps = 52/371 (14%)
Query: 106 DKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADL-LANTGVQFFKDRVKLLCP 164
D +V LV++ F+P+LY++ +G ++ ++ L L V+ ++ L
Sbjct: 28 DAPVRVTLVERHVYNTFQPLLYQVATGGLNPGDVTYWLRGLRLKQKNVRVLHEQ---LVG 84
Query: 165 SDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDA 224
DH + L + V++D+LV++ G PGA E AF + A
Sbjct: 85 IDH----------DARRIRLLNDEWVDFDFLVIANGVTVSYFGTPGAHEHAFGMYSRSQA 134
Query: 225 CRV-DRKLSELERRNFERLEEKGIVQAI---------------NVETTICPTGTPGNREA 268
++ D+ LE+ F E G+ + + T P +
Sbjct: 135 LKIRDQLFIRLEKSAFTHSMEDGLRVVVVGGGATGVEVAGALAELRTAGLAPAYPEIHGS 194
Query: 269 ALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AI 327
A +V ++ +L F +RR E E + G ++ A + E+ P A+
Sbjct: 195 AFEVKIVQRGTELLKGFHPDLRRYAEEELKRR----GVTLHLGAG------VAEVLPDAV 244
Query: 328 KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFA 387
ADL +W+ G + PH P DLP RG+ L V+G P +FA
Sbjct: 245 VLTGGTRIHADLTIWSAG---VAPH---PEVDGWDLPRGPRGRIAVGPDLQVEGRPGVFA 298
Query: 388 LGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRND 447
+GD +A D LP AQ A Q A N+ A I RP P R+++ G M ++GR
Sbjct: 299 VGDIAATPDE----LPQLAQPAIQGGRTAARNILALIEGRPTEPLRYRDKGTMAVIGRR- 353
Query: 448 AAVSPSFVEGV 458
AAV+ V G+
Sbjct: 354 AAVAEINVPGL 364
>gi|87300783|ref|ZP_01083625.1| NAD binding site:FAD-dependent pyridine nucleotide-disulphide
[Synechococcus sp. WH 5701]
gi|87284654|gb|EAQ76606.1| NAD binding site:FAD-dependent pyridine nucleotide-disulphide
[Synechococcus sp. WH 5701]
Length = 472
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 170/448 (37%), Gaps = 74/448 (16%)
Query: 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEI 139
P + I+GGGF GL L K +V L+D+ +F+P+LY++ SG V ++
Sbjct: 21 PHVVIVGGGFAGLKACHALAG------KPVRVTLIDKRNFNLFQPLLYQVASGLVSEADV 74
Query: 140 APRFADLLANT-GVQFFKDRVKLLCP-------SDHLGVNGPMACTHGGTVLLESGLIVE 191
A ++ +Q V + P +DH ++G
Sbjct: 75 ASPLRQMVGQAPNIQVLLGEVVDIDPQAKQVAFNDH---------SYG------------ 113
Query: 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKL-SELERRNFER-LEEKGIVQ 249
YD L+L+ G+ A P LE A + R+L LE R E +G +Q
Sbjct: 114 YDHLILASGSGSTYFGHEEWRPLAPPMKILEHADEIRRRLLMALEEAEQTRDPERRGFLQ 173
Query: 250 AINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV--RC-IRRVGEFEASVKQPESGA 306
+ V P G +L L R ++ RC + V E +
Sbjct: 174 TVVV-VGAGPAGC--ELAGSLIELMHRAIRCDFKQLQHDRCKVVLVDAVERVLPTMHPNL 230
Query: 307 IPNIAADKNSDKYILELQPAIKGLES-----------QIFEADLVLWTVGSKPLLPHVEP 355
A L ++ +KG+ Q +A + WT G +
Sbjct: 231 STAAATHLQGAGVTLMMRSMVKGIAPGRVSLEGTDGPQELQAATICWTAGVR-------- 282
Query: 356 PNNRLHDL-------PLNARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQ 407
+RL L P++ G+ + V GHP I A+GD A L S G+ LP A
Sbjct: 283 -ASRLGALLAERTGCPVDRGGRLLVEPDFSVPGHPDIHAIGDLCAYLHTSDGKSLPGMAG 341
Query: 408 VAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHS 467
A Q + ++ A + PFRF +LG M ++G A + G+ + G G
Sbjct: 342 PAVQMGGWVAAHILARRGGSSVAPFRFTDLGSMAVIGPWYAVAD---LRGLHVTGLAGWV 398
Query: 468 ARKLAYLIRLPTDEHRLKVGVSWLTKSA 495
LA+L +P E+R+ + W+ + A
Sbjct: 399 LWALAHLAFIPDTENRITLFTKWMWQIA 426
>gi|326390069|ref|ZP_08211631.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter ethanolicus JW 200]
gi|392939807|ref|ZP_10305451.1| NADH dehydrogenase, FAD-containing subunit [Thermoanaerobacter
siderophilus SR4]
gi|325993934|gb|EGD52364.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Thermoanaerobacter ethanolicus JW 200]
gi|392291557|gb|EIW00001.1| NADH dehydrogenase, FAD-containing subunit [Thermoanaerobacter
siderophilus SR4]
Length = 596
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 168/411 (40%), Gaps = 57/411 (13%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
RI I+G G+GG++ A +L + +++D ++ L+D+ L+E+ ++ +
Sbjct: 6 RIVIIGAGYGGVHAA-KLLNKKFKNDSTVEITLIDKKPYHTLLTDLHEVAGSRIEPDSVR 64
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDH--LGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
+ AN V+ D V+ + +G +G YD+L+L
Sbjct: 65 VYLHKIFANKKVKVITDEVEKIDYEKQSVIGKDGEY----------------NYDYLILG 108
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVETTIC 258
+G+EP +PG E+ F TLE A + + E+ R+ +E + + +
Sbjct: 109 IGSEPCDFGIPGVFEYGFTVGTLEAAIKTREHIEEMFRK--ASVESNAEKKRKMLTFVVA 166
Query: 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD--KNS 316
G G E A +++ K + R + + V + + +PN+ A +
Sbjct: 167 GAGFTG-IETAGELMEWTKSLCDKYHLDR-----NDVKIMVVEALNTILPNLNARLAAKA 220
Query: 317 DKY-------ILELQPAIKGLESQI-------FEADLVLWTVGSKPLLPHVEPPNNRLHD 362
K+ +L P ++ + I E ++WT G + N + +
Sbjct: 221 QKFLNRKGVEVLTNAPIVEVAKDYIVLKDERKIETKTLIWTCGVQ--------GNKCVEN 272
Query: 363 LPLNA--RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 420
L R + +T+E + G I+ +GD A + G+P+P + A Q A+ A N+
Sbjct: 273 FGLELGRRCRVQTNEYMQAVGKENIYVIGD-LAYYELDGKPIPQVVETALQSAETAVHNI 331
Query: 421 WAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKL 471
A I PF+ + G M+ +G A + GV+L G + + + L
Sbjct: 332 VADIKGEEKKPFKPRYHGFMVSIGSRYAVAE---LMGVSLTGFLAMAMKHL 379
>gi|448352643|ref|ZP_21541424.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Natrialba hulunbeirensis JCM 10989]
gi|445641922|gb|ELY94993.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Natrialba hulunbeirensis JCM 10989]
Length = 389
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/415 (23%), Positives = 176/415 (42%), Gaps = 70/415 (16%)
Query: 81 RICILGGGFGGLYTALRLES-------LVWQDDKKPQVLLVDQSERFVFKPMLYELLSGE 133
+ +LG G+ G +L+S L W D ++L ++ R V P + ++
Sbjct: 4 NVVVLGAGYAGTGAISKLQSELGGSARLTWIADVDYHLVL-HEAHRVVRDPDVRSDITFP 62
Query: 134 VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193
VD +A+ +F +D V L + + V L G V+YD
Sbjct: 63 VDQ----------IADPSTRFIQDDVVGLDVDEQV-------------VELAEGDDVDYD 99
Query: 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINV 253
+++++LG++ +PG E + +L+DA + ++++ ++ R E +V
Sbjct: 100 YVLVALGSQTAYYGIPGLEEHSLTLKSLDDAMEIHDEITQA-SQDATRGEPAQVVVGGAG 158
Query: 254 ETTICPTGTPG----NREAALKVLSARKVQLVLGYFVRCIRRV--GEFEASVKQPESGAI 307
+ I G N A +++ + V + + G + ++Q +
Sbjct: 159 LSGIQTAGEIAEFRDNHRAPIEI-----------HLVEALDEIFPGN-DPEIQQALRDLL 206
Query: 308 PNIAADKNSDKYILELQP-AIKGLESQIFEADLVLWTVG--SKPLL--PHVEPPNNRLHD 362
+ ++D I E + I+ E + E D+++WT G + L +E +NR+
Sbjct: 207 EDAGVRIHTDDPITEAKDDVIEFDEGEPLEHDVLIWTGGITGRDALDDAELEKEHNRV-- 264
Query: 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422
N +T E +FA+GDS AL D RP P TAQ A+Q A+ G N+
Sbjct: 265 ---NVEANFQTTEE-------NVFAIGDS-ALIDQGDRPAPPTAQAAWQAAEVVGENIAR 313
Query: 423 AINDRPLLPFRFQNLGEMMILGRNDAA--VSPSFVEGVTLDGPIGHSARKLAYLI 475
AI +RPL + + + G ++ +G A V P+F + +D G A+ L +I
Sbjct: 314 AIENRPLKTWEYDDKGTVVSVGDKAVAHEVKPAFGVSLPVDTFGGIPAKNLKKMI 368
>gi|377808276|ref|YP_004979468.1| NADH dehydrogenase [Burkholderia sp. YI23]
gi|357939473|gb|AET93030.1| NADH dehydrogenase [Burkholderia sp. YI23]
Length = 435
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 174/403 (43%), Gaps = 41/403 (10%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD--AWE 138
RI I+GGG GGL A RL + + + + V LVD+S V+KP+L+E+ +G +D A E
Sbjct: 3 RIVIVGGGAGGLELATRLGNRLGKAGR-AHVTLVDRSAVHVWKPLLHEVAAGSLDTHAHE 61
Query: 139 IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198
IA +A G F + L GPM + +EYD LVL+
Sbjct: 62 IA--YAAHSHWNGFTFVHGEMTGLDRESRRLKIGPMFEFEDSDAEVLPPRDLEYDTLVLA 119
Query: 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAIN-VETTI 257
LG+ VPGA E A TLE A R+ ++L ++ R +G+ A V+ I
Sbjct: 120 LGSRTHFFGVPGAEEHAIALDTLEQAERLRKRLLQVCLRK----RAQGVSDADEAVDIAI 175
Query: 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG--AIPNIAAD-K 314
G G AA R+++ L F R + + E G +P +A
Sbjct: 176 IGAGATGVELAA----ELRRMEQTLRQF-RLLSESPRAAMRITLLERGDRVLPALARRVS 230
Query: 315 NSDKYILE-------LQPAIKGLESQIFE--------ADLVLWTVGSKPLLPHVEPPNNR 359
++ + ILE + ++ + E AD+ +W G K P V
Sbjct: 231 DTTRAILEKMNISVRVSTSVTRVRPDSVEIAGGASIPADITIWAAGIKA--PAVLAS--- 285
Query: 360 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
L L +N Q + +L + IFALGD ++ ++ +P AQ A QQA F
Sbjct: 286 LDGLAVNHVNQIKVASSLQSETDADIFALGDCASCAWTADVLVPPRAQAAHQQAMFLCKA 345
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDG 462
L A I R + F +++ G ++ LG A S V G+T G
Sbjct: 346 LSARIEGRDVGAFTYKDHGSLVSLGSPTAVGS---VAGMTSSG 385
>gi|410613612|ref|ZP_11324667.1| NADH dehydrogenase [Glaciecola psychrophila 170]
gi|410166764|dbj|GAC38556.1| NADH dehydrogenase [Glaciecola psychrophila 170]
Length = 409
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 92/417 (22%), Positives = 168/417 (40%), Gaps = 81/417 (19%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
++KK RI ++G F GL +L K V ++D + F + P ++E+LS
Sbjct: 4 NRKKSRIIVIGANFAGLTAVSKLC-------KSHDVTVIDAKQDFQWTPNIHEILSDVKK 56
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
++ ++ G +F V ++G + TV L+ I+ YD L
Sbjct: 57 ETSLSLNLDTIITRLGHRFINQTVS--------SIDGALQ-----TVTLDDKQILNYDVL 103
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAINVET 255
+++ G + GA+E+A+ F T +D ++ + L N V
Sbjct: 104 LIASGHSRSNYGIKGASEYAYGFRTADDVIQIHNDIEALLNNNKHP-----------VNI 152
Query: 256 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPES---GAIPNIAA 312
+I G G VLG +R + +V S A+P +
Sbjct: 153 SIVGAGFTGVE--------------VLGELLRKYASNKQLHFNVIDSASRLLQALPEKLS 198
Query: 313 DK------------NSDKYILEL-QPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359
D + ++ I+E+ Q +I +++ ++DL +W+ G+K LP +
Sbjct: 199 DDVISQCKSYQVSFHFNQKIIEVKQSSIHFSDNKSIDSDLTIWSAGTK--LP------DY 250
Query: 360 LHDL--PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417
L+D+ P+ + G A +E L IF GDS+ L S LP A +A A
Sbjct: 251 LNDINTPITSNGLA-VNEYLQTTEFSSIFVAGDSATLSSS----LPKQASIALDMGLHAA 305
Query: 418 WNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEG-VTLDGPIGHSARKLAY 473
N+ + + L P + + ++ LG ++ FV+G + L P+ + ++ Y
Sbjct: 306 LNINRFCDKKTLKPLKVRTKPILLSLGD----INTYFVQGKLVLASPLLAAGKEAVY 358
>gi|407701777|ref|YP_006826564.1| respiratory NADH dehydrogenase II [Alteromonas macleodii str.
'Black Sea 11']
gi|407250924|gb|AFT80109.1| respiratory NADH dehydrogenase II [Alteromonas macleodii str.
'Black Sea 11']
Length = 430
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 146/359 (40%), Gaps = 40/359 (11%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ ++ LVD+S ++KP+L+E+ +G +D +A A +F + L
Sbjct: 28 KQAEITLVDRSRTHIWKPLLHEVAAGVIDKHSDGVDYAIHAAAHHYRFQLGEMCSLNAQA 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G VL E + YD LVL++G+ PG AE + +L+ A R
Sbjct: 88 QTITLSPLIDEEGTQVLPERE--IHYDQLVLAVGSVSNDFGTPGVAEHCYFLDSLKQAER 145
Query: 227 VDRK-LSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAA-------------LKV 272
R L++L R N + E+K ++ I G G AA +
Sbjct: 146 FHRALLNQLIRINQQ--EDKD----ARIDVAIVGAGATGTELAAQLHHVANLSKAYGMPD 199
Query: 273 LSARKVQLVLGYFVRCIRRV-GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 331
+SA ++++ + V R+ + A+ + D + E GL
Sbjct: 200 MSASRLKITI---VEAGERILPALPERIANSARKALHKLGVDIKEQTMVAEADAT--GLI 254
Query: 332 SQ---IFEADLVLWTVGSKPLLPHVEPPN--NRLHDLPLNARGQAETDETLCVKGHPRIF 386
++ +ADL++W G V+ P+ +L N Q D+ L H I+
Sbjct: 255 TKDGGRIDADLMVWAAG-------VKAPDFITKLELFETNRANQILVDKQLRSTTHKNIW 307
Query: 387 ALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGR 445
LGD + +G+ +P AQ A Q AD N+ + + F +++ G ++ L +
Sbjct: 308 VLGDCCGFQQENGKWVPPRAQSAHQMADIVAHNITSLFTQKGTKDFTYKDYGSLVHLSK 366
>gi|315634174|ref|ZP_07889463.1| NADH dehydrogenase [Aggregatibacter segnis ATCC 33393]
gi|315477424|gb|EFU68167.1| NADH dehydrogenase [Aggregatibacter segnis ATCC 33393]
Length = 445
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 152/367 (41%), Gaps = 46/367 (12%)
Query: 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSD 166
K+ V L+D+++ ++KP+L+EL +G +D A + N F + + L
Sbjct: 28 KRANVTLIDRNQTHLWKPLLHELATGALDDGVEALSYRAHAHNHYFNFEQGSMVGLNRQH 87
Query: 167 HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226
P+ G +++ + YD+LV+++G++ G E + A R
Sbjct: 88 KYVELAPVYGDDGDMIVVSRR--IPYDYLVIAIGSKSNDFNTKGVEENCIFLDSPAQAMR 145
Query: 227 VDRKLSEL--ERRNFERLEEKG-------IVQAINVETTICPTGTPGNREAALKVLSARK 277
+K+ L + R + L++ G +VQ ++ I G G E + ++ +A +
Sbjct: 146 FQQKMLALFLKFRENQVLDDIGETESKQELVQDGHIHIAIVGAGATG-VELSAELYNAAE 204
Query: 278 VQLVLGYFVRCIRRVGEFEAS---VKQPESG-----AIP------------NIAADKNSD 317
GY G+ ++S V E+G A+P + D ++
Sbjct: 205 HLSSYGY--------GQIDSSRLNVTLVEAGSRILPALPERISNDATEELRKLGVDVKTN 256
Query: 318 KYILELQPA-IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 376
I+E + + + Q ADL++W+ G + R L +N Q +T
Sbjct: 257 TMIVEAEKKQLVTKDGQHIPADLIVWSAGIR-----TSGITKRFDGLEINRINQLVVKKT 311
Query: 377 LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN 436
L IFA+GD G+P+P AQ A Q A N+ A +++PL F++ +
Sbjct: 312 LQTTNDDTIFAMGDCCFFMQEDGKPVPPKAQAAHQMASRCAKNIIALFDNKPLKDFKYND 371
Query: 437 LGEMMIL 443
G ++ L
Sbjct: 372 KGSLVSL 378
>gi|339326740|ref|YP_004686433.1| NADH dehydrogenase Ndh [Cupriavidus necator N-1]
gi|338166897|gb|AEI77952.1| NADH dehydrogenase Ndh [Cupriavidus necator N-1]
Length = 441
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 148/360 (41%), Gaps = 26/360 (7%)
Query: 108 KPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDH 167
+ QV+LVD+ ++KP+L+E+ +G +D +A A F+ ++ L D
Sbjct: 34 QAQVVLVDRLPTHIWKPLLHEVAAGSMDPNTHQLEYA---AQARWHHFEFQLGELTGIDR 90
Query: 168 L--GVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDAC 225
++ + G LL + + YD LVL++G VPGAAE A + A
Sbjct: 91 TRKTISVSASFDEDGAELLPAREL-PYDTLVLAIGCVTHFFGVPGAAENAIALDVVAQAE 149
Query: 226 RVDRKLSELERRNFERLEEKGIVQAINVETTICPTGTPGNREAA-----LKVLSARKVQL 280
R ++L R G V+ I G G +A VLSA +
Sbjct: 150 RFRKRLIAACVRAQNGRGRVGEDGRPRVDVAIIGAGATGVELSAELRNTAHVLSAYGLHQ 209
Query: 281 V---LGYFVRCI----RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP-AIKGLES 332
+ + I R + V + + + + + + + E+ P A+
Sbjct: 210 LDPRRDVHIHVIEAGPRILPALSERVSVETAKLLKKLDVNVLTSERVTEVTPQAVLTASG 269
Query: 333 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD-S 391
+ +ADL +W G PP LP++ +GQ TL +G P IFA GD +
Sbjct: 270 KHIDADLTVWAAGI------TAPPVLATLGLPVSRQGQIVVGPTLQSEGDPDIFAFGDCA 323
Query: 392 SALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMILGRNDAAVS 451
S +P AQ A QQA F L A ++ RPL F FQ+LG ++ LG A S
Sbjct: 324 SCPWPEKQTAVPPRAQAAHQQATFLYNALRARLDGRPLPSFAFQDLGSLVSLGHFSAVGS 383
>gi|417759660|ref|ZP_12407694.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. 2002000624]
gi|417766249|ref|ZP_12414201.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Bulgarica str. Mallika]
gi|417774062|ref|ZP_12421936.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. 2002000621]
gi|417786837|ref|ZP_12434522.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. C10069]
gi|418671350|ref|ZP_13232702.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. 2002000623]
gi|418725664|ref|ZP_13284282.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. UI 12621]
gi|418731802|ref|ZP_13290077.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. UI 12758]
gi|421119466|ref|ZP_15579786.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. Brem 329]
gi|400351076|gb|EJP03316.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Bulgarica str. Mallika]
gi|409944408|gb|EKN89991.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. 2002000624]
gi|409949689|gb|EKO04222.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. C10069]
gi|409961301|gb|EKO25048.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. UI 12621]
gi|410347617|gb|EKO98490.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. Brem 329]
gi|410576178|gb|EKQ39186.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. 2002000621]
gi|410581611|gb|EKQ49420.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. 2002000623]
gi|410773796|gb|EKR53822.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans str. UI 12758]
gi|455793279|gb|EMF44981.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Lora str. TE 1992]
gi|456825800|gb|EMF74178.1| pyridine nucleotide-disulfide oxidoreductase [Leptospira
interrogans serovar Canicola str. LT1962]
Length = 422
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/432 (18%), Positives = 172/432 (39%), Gaps = 50/432 (11%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVD 135
+ + ++ ++G GFGGL +L + + ++D+ +F+P+LY++ + +
Sbjct: 3 ESNQKKVVVIGAGFGGLQAVKQLSQ-----NNNLDITVIDKKNHHLFQPLLYQVATAVLS 57
Query: 136 AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195
+IA L+ + K+ +L + + + + YD+L
Sbjct: 58 PADIAIPTRSLVGES-----KNVTVVLGEATKIDLKTKTVYYQNTST--------NYDYL 104
Query: 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFERLEEKGIVQAI-NVE 254
+LS GA ++ L+DA ++ KL +FE+ E G + + ++
Sbjct: 105 ILSAGARSSYFGNDHWEKYTIGLKNLKDALKIRHKL----LISFEKAELSGDPEVVKSLL 160
Query: 255 TTICPTGTPGNREAALKV--LSARKVQLVLGYFVRCIRRVGEFEASVK-----QPESGAI 307
+ G P E A + LS + ++ + ++ EAS + P G
Sbjct: 161 NYVIIGGGPTGVELAGSIAELSHQIIRDEFHTIDPALSKITLIEASPRLLMTFDPSLGEF 220
Query: 308 PNIAADKN-----SDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH- 361
++ + ++++ LE ++ V+W G + N +
Sbjct: 221 TKKRLERRGVEVLTGTRVIDINERGVQLEGKMIPTQTVIWAAGVQA---------NSIAA 271
Query: 362 --DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419
+ L+ G+ DE ++GH +F +GD ++ RPLP + VA QQ +
Sbjct: 272 TLGVTLDRGGRVIVDEFCNIEGHSEVFVIGDIASYSKGLERPLPGVSPVAMQQGRYVASL 331
Query: 420 LWAAINDRPLLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPT 479
+ + ++ PF + + G M +GR DA ++ + G G A +L
Sbjct: 332 IQNDLKNKKRKPFHYIDKGSMATIGRTDAVAQVGILK---MKGLFGWLAWLFVHLFYQVG 388
Query: 480 DEHRLKVGVSWL 491
++++ + ++W+
Sbjct: 389 FKNKITILITWV 400
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,165,210,888
Number of Sequences: 23463169
Number of extensions: 355792386
Number of successful extensions: 811046
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 3836
Number of HSP's that attempted gapping in prelim test: 797600
Number of HSP's gapped (non-prelim): 9893
length of query: 513
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 366
effective length of database: 8,910,109,524
effective search space: 3261100085784
effective search space used: 3261100085784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)