BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010331
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
++ +LGG FG L A L+ LV K V ++++S F+P L + G D E+
Sbjct: 3 KVLVLGGRFGALTAAYTLKRLVGS---KADVKVINKSRFSYFRPALPHVAIGVRDVDELK 59
Query: 141 PRFADLLANTGVQFFKDRV-KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
++ L G+QF + V K+ S + P G++ E EYD++++ +
Sbjct: 60 VDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKP-----DGSMAEE-----EYDYVIVGI 109
Query: 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230
GA ++V G ++ + E A ++ K
Sbjct: 110 GAHLATELVKGWDKYGYSVCEPEFATKLREK 140
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 39/172 (22%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + ILG G+G + L D KK V ++ F+F P+L G VD
Sbjct: 42 KPNVLILGSGWGAI------SFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKS 95
Query: 139 IAPRFAD--LLANTGVQFFK--------DR-----------VKLLCPSDHLGVNGPMACT 177
I + L V +++ DR +L P +HLG++
Sbjct: 96 IIEPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAE 155
Query: 178 HGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
++YD+L+ ++GAEP +PG ++ + ++ + R
Sbjct: 156 ------------IKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRR 195
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 30/174 (17%)
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 399
++W G+K P + ++ + + RG A D L VKG IFA+GD++ +G
Sbjct: 324 LIWATGNKAR-PVITDLFKKIPEQNSSKRGLAVND-FLQVKGSNNIFAIGDNAF----AG 377
Query: 400 RPLPATAQVAFQQADFAGWNL--WAAI------------------NDRPLLPFRFQNLGE 439
LP TAQVA Q+A++ N A I + PF++ +LG
Sbjct: 378 --LPPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGA 435
Query: 440 MMILG--RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+ LG R A + T G + ++ YL + + RLKV W+
Sbjct: 436 LAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWI 489
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 39/172 (22%)
Query: 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWE 138
KP + ILG G+G + L D KK V ++ F+F P+L G VD
Sbjct: 11 KPNVLILGSGWGAI------SFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKS 64
Query: 139 IAPRFAD--LLANTGVQFFK--------DR-----------VKLLCPSDHLGVNGPMACT 177
I + L V +++ DR +L P +HLG++
Sbjct: 65 IIEPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAE 124
Query: 178 HGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
++YD+L+ ++GAEP +PG ++ + ++ + R
Sbjct: 125 ------------IKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRR 164
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 30/174 (17%)
Query: 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSG 399
++W G+K P + ++ + + RG A D L VKG IFA+GD++ +G
Sbjct: 293 LIWATGNKAR-PVITDLFKKIPEQNSSKRGLAVND-FLQVKGSNNIFAIGDNAF----AG 346
Query: 400 RPLPATAQVAFQQADFAGWNL--WAAI------------------NDRPLLPFRFQNLGE 439
LP TAQVA Q+A++ N A I + PF++ +LG
Sbjct: 347 --LPPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGA 404
Query: 440 MMILG--RNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWL 491
+ LG R A + T G + ++ YL + + RLKV W+
Sbjct: 405 LAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWI 458
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 32/141 (22%)
Query: 74 WPDKKKPR-ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSG 132
+ D+KKPR ++GGGF G+ L ++ +V LV+ + + V P+ YE
Sbjct: 181 YIDEKKPRHATVIGGGFIGVEXVENLR------ERGIEVTLVEXANQ-VXPPIDYEX--- 230
Query: 133 EVDAWEIAPRFADLLANTGVQF-FKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE 191
A + N V+ F+D V L + G V L+SG +++
Sbjct: 231 -------AAYVHEHXKNHDVELVFEDGVDALEEN-------------GAVVRLKSGSVIQ 270
Query: 192 YDWLVLSLGAEPKLDVVPGAA 212
D L+L++G +P+ + GA
Sbjct: 271 TDXLILAIGVQPESSLAKGAG 291
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 20/138 (14%)
Query: 94 TALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQ 153
TA L +L+ D K + L+ F F P L G +I+ A LL ++
Sbjct: 17 TAYNLRNLM--PDLK--ITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIE 72
Query: 154 FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV-VPGAA 212
F ++ + + P TV +SG +EYD+LV++ G PKL G
Sbjct: 73 FINEKAESIDPD-------------ANTVTTQSGKKIEYDYLVIATG--PKLVFGAEGQE 117
Query: 213 EFAFPFSTLEDACRVDRK 230
E + T E A +K
Sbjct: 118 ENSTSICTAEHALETQKK 135
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 20/138 (14%)
Query: 94 TALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQ 153
TA L +L+ D K + L+ F F P L G +I+ A LL ++
Sbjct: 17 TAYNLRNLM--PDLK--ITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIE 72
Query: 154 FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV-VPGAA 212
F ++ + + P TV +SG +EYD+LV++ G PKL G
Sbjct: 73 FINEKAESIDPD-------------ANTVTTQSGKKIEYDYLVIATG--PKLVFGAEGQE 117
Query: 213 EFAFPFSTLEDACRVDRK 230
E + T E A +K
Sbjct: 118 ENSTSICTAEHALETQKK 135
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 22/155 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF--VFKPMLYELLSGEVDAWEI 139
+ I+G G G+ A L + W+ + + LV + P+ L+G+ A +
Sbjct: 6 VVIVGTGLAGVEVAFGLRASGWEGN----IRLVGDATVIPHHLPPLSKAYLAGKATAESL 61
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
R D A +Q LL + +N V+L G ++YD LVL+
Sbjct: 62 YLRTPDAYAAQNIQ-------LLGGTQVTAINRDRQ-----QVILSDGRALDYDRLVLAT 109
Query: 200 GAEPK-LDVVPGAAEFAFPF---STLEDACRVDRK 230
G P+ L V GA A F TLEDA + R+
Sbjct: 110 GGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQ 144
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 22/155 (14%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF--VFKPMLYELLSGEVDAWEI 139
+ I+G G G+ A L + W+ + + LV + P+ L+G+ A +
Sbjct: 7 VVIVGTGLAGVEVAFGLRASGWEGN----IRLVGDATVIPHHLPPLSKAYLAGKATAESL 62
Query: 140 APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199
R D A +Q LL + +N V+L G ++YD LVL+
Sbjct: 63 YLRTPDAYAAQNIQ-------LLGGTQVTAINRDRQ-----QVILSDGRALDYDRLVLAT 110
Query: 200 GAEPK-LDVVPGAAEFAFPF---STLEDACRVDRK 230
G P+ L V GA A F TLEDA + R+
Sbjct: 111 GGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQ 145
>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys356ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
Length = 437
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 19/149 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + + L G V YD+L+++ G
Sbjct: 63 FPIRHYVERKGIHFIAQSAEQIDAEAQ-------------NITLADGNTVHYDYLMIATG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
+ + VPG+ P ++ C VD
Sbjct: 110 PKLAFENVPGSDPHEGPVQSI---CTVDH 135
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 331 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGD 390
E++ +AD VL TVG + P+ + + + RG E D+ C P IFA+GD
Sbjct: 253 ETKTIDADYVLVTVGRR---PNTDELGLEQIGIKMTNRGLIEVDQQ-CRTSVPNIFAIGD 308
>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T2Z|B Chain B, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T31|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With
Decylubiquinone
pdb|3SZ0|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Sodium
Selenide
pdb|3SZC|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Gold (I)
Cyanide
pdb|3T0K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans With Bound Trisulfide And
Decylubiquinone
Length = 437
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 19/149 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + D N + L G V YD+L+++ G
Sbjct: 63 FPIRHYVERKGIHFIAQSAEQI---DAEAQN----------ITLADGNTVHYDYLMIATG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
+ + VPG+ P ++ C VD
Sbjct: 110 PKLAFENVPGSDPHEGPVQSI---CTVDH 135
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 19/149 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 3 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + + L G V YD+L+++ G
Sbjct: 60 FPIRHYVERKGIHFIAQSAEQIDAEAQ-------------NITLADGNTVHYDYLMIATG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
+ + VPG+ P ++ C VD
Sbjct: 107 PKLAFENVPGSDPHEGPVQSI---CTVDH 132
>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase H198a
Variant From Acidithiobacillus Ferrooxidans In Complex
With Bound Trisulfide And Decylubiquinone
Length = 437
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 19/149 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + D N + L G V YD+L+++ G
Sbjct: 63 FPIRHYVERKGIHFIAQSAEQI---DAEAQN----------ITLADGNTVHYDYLMIATG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
+ + VPG+ P ++ C VD
Sbjct: 110 PKLAFENVPGSDPHEGPVQSI---CTVDH 135
>pdb|2RAU|A Chain A, Crystal Structure Of A Putative Lipase (Np_343859.1) From
Sulfolobus Solfataricus At 1.85 A Resolution
Length = 354
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY 127
D + RI + G FGG+ AL SL W++D K +LL + +P Y
Sbjct: 140 DSGQERIYLAGESFGGI-AALNYSSLYWKNDIKGLILLDGGPTKHGIRPKFY 190
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 19/148 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 3 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 59
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + D N + L G V YD+L+++ G
Sbjct: 60 FPIRHYVERKGIHFIAQSAEQI---DAEAQN----------ITLADGNTVHYDYLMIATG 106
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVD 228
+ + VPG+ P ++ C VD
Sbjct: 107 PKLAFENVPGSDPHEGPVQSI---CTVD 131
>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
pdb|3SYI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
Using 7.0 Kev Diffraction Data
Length = 437
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 19/149 (12%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + D N + L G V YD+L+++ G
Sbjct: 63 FPIRHYVERKGIHFIAQSAEQI---DAEAQN----------ITLADGNTVHYDYLMIATG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
+ + VPG+ P + C VD
Sbjct: 110 PKLAFENVPGSDPHEGPVQAI---CTVDH 135
>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ser Variant From Acidithiobacillus Ferrooxidans In
Complex With Decylubiquinone
Length = 437
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 16/149 (10%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + + L G V YD+L+++ G
Sbjct: 63 FPIRHYVERKGIHFIAQSAEQIDAEAQ-------------NITLADGNTVHYDYLMIATG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
+ + VPG+ P ++ +R
Sbjct: 110 PKLAFENVPGSDPHEGPVQSISTVDHAER 138
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK-LDVVPGAAEFAFPFSTLEDACR 226
LGV TV L G + Y LVL+ GA P+ L + GA TLEDA R
Sbjct: 78 LGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARR 137
Query: 227 V 227
+
Sbjct: 138 I 138
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 168 LGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK-LDVVPGAAEFAFPFSTLEDACR 226
LGV TV L G + Y LVL+ GA P+ L + GA TLEDA R
Sbjct: 78 LGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARR 137
Query: 227 V 227
+
Sbjct: 138 I 138
>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
pdb|3T14|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
pdb|3T2K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Trisulfane
Length = 437
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 16/149 (10%)
Query: 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIA 140
+ ILG G GG+ A ++ + +V L+ ++ F F P + G + +IA
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFVPSNPWVGVGWKERDDIA 62
Query: 141 PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200
+ G+ F + + + L G V YD+L+++ G
Sbjct: 63 FPIRHYVERKGIHFIAQSAEQIDAEAQ-------------NITLADGNTVHYDYLMIATG 109
Query: 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDR 229
+ + VPG+ P ++ +R
Sbjct: 110 PKLAFENVPGSDPHEGPVQSIATVDHAER 138
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 153 QFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAA 212
+FF+D+ L + ++ G +LL SG +EY LVL+ GA ++ VP A+
Sbjct: 65 KFFQDQAIELISDRMVSID-----REGRKLLLASGTAIEYGHLVLATGARNRMLDVPNAS 119
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 330 LESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 389
+S I D++ TV S P PP N+ +LP+ Q L HP I A
Sbjct: 262 FQSGIGPTDMIQ-TVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFT-HPSIDAYE 319
Query: 390 DSSALRDSSGRPLPATAQVAFQQADFAG----WNLWAA 423
+ + + S+ RP A +A Q FAG N W A
Sbjct: 320 NWADVW-SNPRPADAAQYLANQSGVFAGASPKLNFWRA 356
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 330 LESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALG 389
+S I D++ TV S P PP N+ +LP+ Q L HP I A
Sbjct: 267 FQSGIGPTDMIQ-TVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFT-HPSIDAYE 324
Query: 390 DSSALRDSSGRPLPATAQVAFQQADFAG----WNLWAA 423
+ + + S+ RP A +A Q FAG N W A
Sbjct: 325 NWADVW-SNPRPADAAQYLANQSGVFAGASPKLNFWRA 361
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 59/146 (40%), Gaps = 16/146 (10%)
Query: 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAP 141
+ I+G G G A L D + P +++ R KPML S DA +A
Sbjct: 7 LVIIGTGLAGYNLAREWRKL---DGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA- 62
Query: 142 RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201
+A G + ++L + G++ G + V Y LVL+ GA
Sbjct: 63 -----MAEPGAMAEQLNARILTHTRVTGID------PGHQRIWIGEEEVRYRDLVLAWGA 111
Query: 202 EPKLDVVPGAAEFA-FPFSTLEDACR 226
EP V G A+ A +P + LED R
Sbjct: 112 EPIRVPVEGDAQDALYPINDLEDYAR 137
>pdb|1S9C|A Chain A, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|B Chain B, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|C Chain C, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|D Chain D, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|E Chain E, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|F Chain F, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|G Chain G, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|H Chain H, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|I Chain I, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|J Chain J, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|K Chain K, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|L Chain L, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
Length = 298
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 87 GGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADL 146
GGFGG T+ +++ V ++ P +L D + + + LY LSG+ + I P FA L
Sbjct: 150 GGFGGKRTSDKVKVAVAIPNRPPDAVLTDTTS--LNQAALYR-LSGDWNPLHIDPNFASL 206
>pdb|3HRS|A Chain A, Crystal Structure Of The Manganese-Activated Repressor
Scar: Apo Form
pdb|3HRS|B Chain B, Crystal Structure Of The Manganese-Activated Repressor
Scar: Apo Form
pdb|3HRT|A Chain A, Crystal Structure Of Scar With Bound Cd2+
pdb|3HRT|B Chain B, Crystal Structure Of Scar With Bound Cd2+
pdb|3HRU|A Chain A, Crystal Structure Of Scar With Bound Zn2+
pdb|3HRU|B Chain B, Crystal Structure Of Scar With Bound Zn2+
Length = 214
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 144 ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202
A++L +T F +R+ L ++ P AC HGGT+ + L+VE L L E
Sbjct: 97 AEVLEHTVSDHFVERLDQL-------LDYPKACPHGGTIPAKGELLVEKHKLTLEEAKE 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,569,248
Number of Sequences: 62578
Number of extensions: 608419
Number of successful extensions: 1302
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1282
Number of HSP's gapped (non-prelim): 35
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)