Query 010331
Match_columns 513
No_of_seqs 365 out of 3294
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 23:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1252 Ndh NADH dehydrogenase 100.0 4.1E-62 8.8E-67 485.8 35.2 360 78-497 2-401 (405)
2 PTZ00318 NADH dehydrogenase-li 100.0 3.4E-55 7.4E-60 454.0 38.5 356 77-496 8-417 (424)
3 KOG2495 NADH-dehydrogenase (ub 100.0 3.4E-52 7.5E-57 402.1 27.7 365 75-495 51-483 (491)
4 TIGR03169 Nterm_to_SelD pyridi 100.0 1.1E-45 2.4E-50 376.7 32.9 336 81-478 1-362 (364)
5 PRK09754 phenylpropionate diox 100.0 3.8E-36 8.3E-41 309.4 27.2 311 79-445 3-333 (396)
6 PRK13512 coenzyme A disulfide 100.0 5.4E-35 1.2E-39 304.3 28.5 285 80-422 2-311 (438)
7 PRK04965 NADH:flavorubredoxin 100.0 7.1E-35 1.5E-39 298.3 26.8 285 79-423 2-302 (377)
8 PRK09564 coenzyme A disulfide 100.0 6.7E-35 1.4E-39 305.3 24.4 289 81-422 2-316 (444)
9 PRK14989 nitrite reductase sub 100.0 1.6E-34 3.4E-39 318.4 27.3 291 79-422 3-309 (847)
10 TIGR02374 nitri_red_nirB nitri 100.0 8.3E-34 1.8E-38 313.2 27.9 284 82-422 1-300 (785)
11 TIGR01424 gluta_reduc_2 glutat 100.0 5E-32 1.1E-36 282.9 26.8 275 79-422 2-325 (446)
12 PLN02507 glutathione reductase 100.0 2.4E-31 5.1E-36 280.2 27.6 278 78-422 24-362 (499)
13 PRK06416 dihydrolipoamide dehy 100.0 4.8E-31 1E-35 277.3 26.9 280 79-422 4-333 (462)
14 PRK06116 glutathione reductase 100.0 1.3E-31 2.9E-36 280.4 22.7 274 79-422 4-327 (450)
15 PRK08010 pyridine nucleotide-d 100.0 1.3E-30 2.7E-35 272.3 27.5 279 79-422 3-316 (441)
16 PRK06467 dihydrolipoamide dehy 100.0 1.1E-30 2.4E-35 274.1 26.2 281 79-422 4-336 (471)
17 TIGR01421 gluta_reduc_1 glutat 100.0 3.5E-30 7.6E-35 268.8 29.4 275 79-422 2-327 (450)
18 TIGR02053 MerA mercuric reduct 100.0 1.6E-30 3.5E-35 273.2 26.3 278 80-422 1-328 (463)
19 COG1249 Lpd Pyruvate/2-oxoglut 100.0 5.7E-31 1.2E-35 269.4 22.1 283 78-422 3-334 (454)
20 KOG1336 Monodehydroascorbate/f 100.0 7.7E-31 1.7E-35 259.2 21.7 305 79-436 74-397 (478)
21 PLN02546 glutathione reductase 100.0 4.5E-30 9.7E-35 271.8 28.7 275 79-422 79-412 (558)
22 PRK05249 soluble pyridine nucl 100.0 1.7E-30 3.8E-35 273.0 25.4 279 79-422 5-334 (461)
23 PRK06370 mercuric reductase; V 100.0 3.1E-30 6.7E-35 271.0 27.0 278 79-422 5-333 (463)
24 TIGR01292 TRX_reduct thioredox 100.0 6.1E-31 1.3E-35 260.9 20.0 273 80-423 1-299 (300)
25 PRK14694 putative mercuric red 100.0 4.3E-30 9.3E-35 269.9 27.4 278 77-422 4-334 (468)
26 PRK07845 flavoprotein disulfid 100.0 2E-30 4.4E-35 272.0 24.7 279 80-422 2-336 (466)
27 PRK06115 dihydrolipoamide dehy 100.0 8.5E-30 1.8E-34 267.2 26.0 284 79-423 3-338 (466)
28 PRK07846 mycothione reductase; 100.0 1.1E-29 2.4E-34 264.9 26.4 273 80-422 2-324 (451)
29 TIGR01423 trypano_reduc trypan 100.0 1.2E-29 2.7E-34 265.6 26.1 280 78-422 2-350 (486)
30 PRK07251 pyridine nucleotide-d 100.0 4.2E-29 9E-34 260.7 28.7 277 79-422 3-315 (438)
31 PTZ00058 glutathione reductase 100.0 5.3E-29 1.2E-33 263.5 29.2 303 74-422 43-431 (561)
32 PRK05976 dihydrolipoamide dehy 100.0 4.9E-29 1.1E-33 262.4 26.9 288 79-422 4-342 (472)
33 PRK13748 putative mercuric red 100.0 1.2E-28 2.5E-33 265.5 29.1 277 78-422 97-427 (561)
34 TIGR01438 TGR thioredoxin and 100.0 4.2E-29 9.2E-34 262.2 23.9 281 79-422 2-343 (484)
35 PRK14727 putative mercuric red 100.0 1.8E-28 3.8E-33 258.2 28.0 279 77-422 14-345 (479)
36 TIGR01350 lipoamide_DH dihydro 100.0 2E-28 4.4E-33 257.5 28.5 280 80-423 2-332 (461)
37 PRK07818 dihydrolipoamide dehy 100.0 9E-29 1.9E-33 260.0 25.6 281 79-422 4-335 (466)
38 TIGR03385 CoA_CoA_reduc CoA-di 100.0 4.5E-29 9.9E-34 259.7 22.0 276 93-422 1-303 (427)
39 PRK06292 dihydrolipoamide dehy 100.0 3.2E-28 6.9E-33 255.8 26.9 277 79-422 3-330 (460)
40 PRK10262 thioredoxin reductase 100.0 7.3E-29 1.6E-33 248.4 19.8 290 78-426 5-316 (321)
41 COG1251 NirB NAD(P)H-nitrite r 100.0 5.9E-29 1.3E-33 256.4 18.8 291 79-426 3-309 (793)
42 PRK06912 acoL dihydrolipoamide 100.0 3.1E-28 6.7E-33 255.2 24.6 277 81-422 2-329 (458)
43 TIGR03452 mycothione_red mycot 100.0 1.1E-27 2.3E-32 250.2 28.5 211 150-422 105-327 (452)
44 PTZ00052 thioredoxin reductase 100.0 4.9E-28 1.1E-32 255.3 24.9 275 79-422 5-340 (499)
45 PRK06327 dihydrolipoamide dehy 100.0 2.9E-27 6.2E-32 248.9 27.8 284 79-422 4-346 (475)
46 PTZ00153 lipoamide dehydrogena 100.0 4.1E-27 8.8E-32 252.2 28.9 219 151-422 248-494 (659)
47 KOG3851 Sulfide:quinone oxidor 100.0 2.2E-28 4.7E-33 228.1 15.2 302 77-437 37-372 (446)
48 TIGR03143 AhpF_homolog putativ 100.0 4.2E-28 9.1E-33 259.1 19.6 281 79-426 4-310 (555)
49 TIGR03140 AhpF alkyl hydropero 100.0 3.8E-28 8.3E-33 257.5 18.9 282 77-425 210-513 (515)
50 PRK15317 alkyl hydroperoxide r 100.0 3E-27 6.6E-32 250.9 20.5 284 77-427 209-514 (517)
51 TIGR01316 gltA glutamate synth 99.9 1E-26 2.3E-31 242.4 21.4 281 78-424 132-449 (449)
52 PRK09853 putative selenate red 99.9 1.5E-26 3.2E-31 253.6 23.1 285 77-425 537-842 (1019)
53 PRK11749 dihydropyrimidine deh 99.9 2.6E-26 5.6E-31 240.6 22.4 285 77-428 138-455 (457)
54 PRK12831 putative oxidoreducta 99.9 3.8E-26 8.3E-31 238.6 23.3 288 77-427 138-463 (464)
55 COG0492 TrxB Thioredoxin reduc 99.9 2.7E-26 5.8E-31 224.3 19.3 282 78-426 2-302 (305)
56 KOG1335 Dihydrolipoamide dehyd 99.9 5E-26 1.1E-30 217.3 18.1 290 78-423 38-377 (506)
57 PRK12770 putative glutamate sy 99.9 2.5E-25 5.4E-30 225.5 23.7 293 78-426 17-351 (352)
58 TIGR03315 Se_ygfK putative sel 99.9 2.5E-25 5.5E-30 245.3 24.6 304 78-444 536-871 (1012)
59 PRK12778 putative bifunctional 99.9 2.6E-25 5.5E-30 246.0 23.4 286 78-427 430-752 (752)
60 PRK12814 putative NADPH-depend 99.9 2.5E-25 5.4E-30 241.5 19.4 288 78-431 192-507 (652)
61 PRK12779 putative bifunctional 99.9 1.1E-24 2.4E-29 242.7 24.3 296 78-426 305-628 (944)
62 PRK12810 gltD glutamate syntha 99.9 1.3E-24 2.7E-29 228.3 21.9 289 78-431 142-471 (471)
63 PRK12775 putative trifunctiona 99.9 1.1E-23 2.5E-28 236.7 22.6 286 78-427 429-757 (1006)
64 KOG0405 Pyridine nucleotide-di 99.9 1.3E-23 2.8E-28 198.4 18.8 280 77-422 18-349 (478)
65 KOG0404 Thioredoxin reductase 99.9 4E-24 8.7E-29 190.2 14.3 276 79-418 8-312 (322)
66 TIGR01317 GOGAT_sm_gam glutama 99.9 8.6E-23 1.9E-27 214.6 21.9 305 78-431 142-485 (485)
67 TIGR01318 gltD_gamma_fam gluta 99.9 1E-22 2.2E-27 213.2 22.3 281 78-425 140-466 (467)
68 PRK12769 putative oxidoreducta 99.9 1.7E-22 3.7E-27 220.3 22.3 282 78-426 326-653 (654)
69 PRK13984 putative oxidoreducta 99.9 2.4E-22 5.2E-27 217.8 22.0 297 77-426 281-603 (604)
70 KOG4716 Thioredoxin reductase 99.9 2E-23 4.2E-28 196.4 10.4 195 188-422 158-364 (503)
71 COG0446 HcaD Uncharacterized N 99.9 5.3E-22 1.1E-26 205.7 22.0 292 82-423 1-310 (415)
72 PRK12809 putative oxidoreducta 99.9 1E-21 2.2E-26 213.2 22.2 294 78-427 309-637 (639)
73 KOG1346 Programmed cell death 99.9 2.6E-22 5.6E-27 193.4 12.0 294 79-425 178-521 (659)
74 PLN02852 ferredoxin-NADP+ redu 99.9 3.9E-21 8.4E-26 199.3 21.4 306 77-427 24-424 (491)
75 PRK12771 putative glutamate sy 99.9 6.8E-21 1.5E-25 204.6 22.8 285 77-429 135-448 (564)
76 TIGR01372 soxA sarcosine oxida 99.9 4.5E-20 9.9E-25 208.9 24.3 290 78-426 162-473 (985)
77 COG3634 AhpF Alkyl hydroperoxi 99.8 5.8E-20 1.3E-24 173.8 15.2 283 77-419 209-509 (520)
78 PF07992 Pyr_redox_2: Pyridine 99.8 1.4E-19 3.1E-24 168.5 5.6 135 81-228 1-146 (201)
79 PLN02172 flavin-containing mon 99.7 6.6E-17 1.4E-21 168.3 17.6 257 78-422 9-350 (461)
80 KOG2755 Oxidoreductase [Genera 99.7 4.7E-17 1E-21 148.7 5.9 278 81-395 1-323 (334)
81 COG0493 GltD NADPH-dependent g 99.6 2.3E-15 5E-20 154.8 16.2 294 78-426 122-453 (457)
82 PRK06567 putative bifunctional 99.6 8E-15 1.7E-19 159.7 20.0 112 77-212 381-519 (1028)
83 KOG0399 Glutamate synthase [Am 99.6 2.5E-14 5.5E-19 152.2 18.0 291 77-428 1783-2123(2142)
84 COG1148 HdrA Heterodisulfide r 99.5 9.8E-13 2.1E-17 130.4 20.1 142 247-426 402-546 (622)
85 PF00743 FMO-like: Flavin-bind 99.5 8.3E-14 1.8E-18 147.1 10.9 123 79-213 1-164 (531)
86 KOG1800 Ferredoxin/adrenodoxin 99.4 2.9E-12 6.4E-17 123.6 13.1 109 79-212 20-130 (468)
87 PTZ00188 adrenodoxin reductase 99.4 6.9E-12 1.5E-16 128.6 15.3 102 78-204 38-139 (506)
88 PRK05329 anaerobic glycerol-3- 99.3 1.1E-10 2.3E-15 119.8 18.9 147 247-424 245-420 (422)
89 COG2081 Predicted flavoprotein 99.0 1.4E-09 3.1E-14 107.0 10.9 108 78-202 2-166 (408)
90 PF13434 K_oxygenase: L-lysine 99.0 1.8E-09 4E-14 108.3 11.3 230 80-347 3-340 (341)
91 PF13738 Pyr_redox_3: Pyridine 99.0 6.1E-10 1.3E-14 103.7 6.9 111 83-210 1-147 (203)
92 KOG1399 Flavin-containing mono 99.0 6E-09 1.3E-13 107.1 14.0 118 78-211 5-163 (448)
93 COG3486 IucD Lysine/ornithine 99.0 2.5E-08 5.4E-13 98.2 17.3 109 276-413 291-404 (436)
94 COG2072 TrkA Predicted flavopr 98.9 3.3E-09 7.1E-14 110.4 10.3 123 77-214 6-157 (443)
95 TIGR00136 gidA glucose-inhibit 98.9 1.1E-07 2.5E-12 100.5 20.3 49 372-429 347-395 (617)
96 TIGR03378 glycerol3P_GlpB glyc 98.9 1.4E-07 3.1E-12 95.9 19.1 126 263-420 263-418 (419)
97 PLN02463 lycopene beta cyclase 98.8 2E-08 4.4E-13 104.3 11.5 111 77-204 26-170 (447)
98 PRK04176 ribulose-1,5-biphosph 98.8 4.4E-07 9.5E-12 87.5 18.8 137 265-426 106-256 (257)
99 PF03486 HI0933_like: HI0933-l 98.8 8.4E-09 1.8E-13 105.6 7.1 108 80-203 1-166 (409)
100 COG4529 Uncharacterized protei 98.8 3E-07 6.5E-12 93.1 17.0 116 79-206 1-167 (474)
101 PRK08401 L-aspartate oxidase; 98.8 8.5E-08 1.8E-12 101.0 13.3 55 368-423 310-365 (466)
102 PF13454 NAD_binding_9: FAD-NA 98.6 4.8E-07 1E-11 80.5 11.8 107 83-201 1-155 (156)
103 COG0029 NadB Aspartate oxidase 98.6 1E-06 2.2E-11 89.3 15.1 31 81-118 9-39 (518)
104 TIGR01790 carotene-cycl lycope 98.6 1.7E-07 3.7E-12 96.5 9.7 107 81-203 1-141 (388)
105 PRK06847 hypothetical protein; 98.6 2.8E-07 6E-12 94.5 10.7 109 79-204 4-164 (375)
106 TIGR02032 GG-red-SF geranylger 98.6 2.5E-07 5.3E-12 91.2 9.9 107 80-203 1-148 (295)
107 PRK05945 sdhA succinate dehydr 98.5 5.2E-07 1.1E-11 97.5 12.2 36 79-118 3-38 (575)
108 COG0579 Predicted dehydrogenas 98.5 1.8E-06 3.9E-11 88.0 15.2 39 78-120 2-40 (429)
109 PF01266 DAO: FAD dependent ox 98.5 1.4E-06 3E-11 88.2 14.5 58 262-349 146-204 (358)
110 PRK08773 2-octaprenyl-3-methyl 98.5 3.8E-07 8.3E-12 94.0 10.4 36 77-118 4-39 (392)
111 PRK07804 L-aspartate oxidase; 98.5 7.2E-07 1.6E-11 95.6 12.4 35 78-118 15-49 (541)
112 PRK09754 phenylpropionate diox 98.5 4.3E-07 9.2E-12 93.8 10.2 99 79-205 144-243 (396)
113 PLN02697 lycopene epsilon cycl 98.5 4.4E-07 9.6E-12 96.0 10.3 110 78-203 107-248 (529)
114 TIGR00551 nadB L-aspartate oxi 98.5 1.8E-06 3.8E-11 91.6 14.6 54 368-424 333-389 (488)
115 PF00070 Pyr_redox: Pyridine n 98.5 4.8E-07 1E-11 70.6 7.8 70 81-167 1-71 (80)
116 PRK09231 fumarate reductase fl 98.5 9.4E-07 2E-11 95.4 12.5 58 367-426 357-416 (582)
117 PRK07608 ubiquinone biosynthes 98.5 6.2E-07 1.4E-11 92.3 10.7 36 78-119 4-39 (388)
118 PRK06854 adenylylsulfate reduc 98.5 1.1E-06 2.4E-11 95.4 12.9 45 375-426 389-433 (608)
119 PRK08275 putative oxidoreducta 98.5 2.3E-06 5E-11 92.1 15.1 51 368-426 356-406 (554)
120 PRK13977 myosin-cross-reactive 98.5 4.1E-06 8.9E-11 88.2 16.3 43 78-122 21-63 (576)
121 PF01134 GIDA: Glucose inhibit 98.5 6.2E-07 1.3E-11 90.3 9.8 106 81-202 1-151 (392)
122 PRK07251 pyridine nucleotide-d 98.5 8.8E-07 1.9E-11 92.7 11.1 99 79-206 157-256 (438)
123 TIGR01812 sdhA_frdA_Gneg succi 98.5 1.3E-06 2.8E-11 94.4 12.7 56 368-425 342-403 (566)
124 PRK04965 NADH:flavorubredoxin 98.5 8.9E-07 1.9E-11 90.8 10.9 100 79-205 141-241 (377)
125 PRK06263 sdhA succinate dehydr 98.5 2.7E-06 6E-11 91.3 14.8 58 368-426 348-405 (543)
126 TIGR03385 CoA_CoA_reduc CoA-di 98.5 1.1E-06 2.3E-11 91.8 11.3 98 79-205 137-235 (427)
127 PRK05714 2-octaprenyl-3-methyl 98.5 7.7E-07 1.7E-11 92.2 10.2 34 79-118 2-35 (405)
128 PLN00093 geranylgeranyl diphos 98.5 7.9E-07 1.7E-11 92.9 10.2 38 75-118 35-72 (450)
129 PRK07333 2-octaprenyl-6-methox 98.4 7.6E-07 1.6E-11 92.2 9.7 110 80-204 2-168 (403)
130 PRK05192 tRNA uridine 5-carbox 98.4 1.1E-06 2.5E-11 93.2 10.7 109 79-203 4-157 (618)
131 COG1249 Lpd Pyruvate/2-oxoglut 98.4 1.5E-06 3.3E-11 89.9 11.4 102 78-207 172-276 (454)
132 PRK05976 dihydrolipoamide dehy 98.4 1.5E-06 3.3E-11 91.8 11.4 100 79-206 180-284 (472)
133 PRK07803 sdhA succinate dehydr 98.4 2.1E-06 4.5E-11 93.5 12.6 57 368-426 391-449 (626)
134 PRK07364 2-octaprenyl-6-methox 98.4 1.8E-06 3.9E-11 89.7 11.6 35 79-119 18-52 (415)
135 PRK06452 sdhA succinate dehydr 98.4 2.7E-06 5.8E-11 91.7 13.0 59 368-426 346-405 (566)
136 TIGR02023 BchP-ChlP geranylger 98.4 1.3E-06 2.8E-11 90.0 10.2 32 80-117 1-32 (388)
137 PF05834 Lycopene_cycl: Lycope 98.4 1.2E-06 2.6E-11 89.6 9.8 109 81-204 1-143 (374)
138 PTZ00383 malate:quinone oxidor 98.4 1.7E-06 3.7E-11 91.0 11.2 39 76-118 42-80 (497)
139 TIGR03329 Phn_aa_oxid putative 98.4 1.2E-06 2.6E-11 92.2 10.0 38 77-118 22-59 (460)
140 PLN02661 Putative thiazole syn 98.4 1.8E-05 3.9E-10 78.7 17.5 38 78-120 91-128 (357)
141 PRK06184 hypothetical protein; 98.4 1.8E-06 3.9E-11 92.0 11.3 34 79-118 3-36 (502)
142 PRK10157 putative oxidoreducta 98.4 1.4E-06 3E-11 90.9 10.1 35 79-119 5-39 (428)
143 PRK06834 hypothetical protein; 98.4 1.7E-06 3.7E-11 91.6 10.9 109 79-204 3-157 (488)
144 PRK13800 putative oxidoreducta 98.4 3.5E-06 7.6E-11 95.6 13.5 51 367-425 360-410 (897)
145 PRK06069 sdhA succinate dehydr 98.4 2.5E-06 5.4E-11 92.3 11.7 57 368-425 352-415 (577)
146 TIGR01350 lipoamide_DH dihydro 98.4 2.1E-06 4.5E-11 90.6 11.0 100 79-206 170-272 (461)
147 PRK06416 dihydrolipoamide dehy 98.4 2.1E-06 4.6E-11 90.5 11.0 101 79-207 172-276 (462)
148 PRK08071 L-aspartate oxidase; 98.4 2.8E-06 6E-11 90.5 11.8 55 368-424 332-388 (510)
149 PRK10015 oxidoreductase; Provi 98.4 1.9E-06 4.2E-11 89.7 10.4 35 79-119 5-39 (429)
150 PF01494 FAD_binding_3: FAD bi 98.4 6.4E-06 1.4E-10 83.2 14.0 39 80-124 2-40 (356)
151 PRK08020 ubiF 2-octaprenyl-3-m 98.4 2.1E-06 4.6E-11 88.5 10.5 35 78-118 4-38 (391)
152 TIGR00137 gid_trmFO tRNA:m(5)U 98.3 2.2E-05 4.8E-10 80.4 17.1 50 374-432 321-370 (433)
153 COG0644 FixC Dehydrogenases (f 98.3 1.5E-06 3.3E-11 89.7 8.9 39 78-122 2-40 (396)
154 PRK08163 salicylate hydroxylas 98.3 2.5E-06 5.3E-11 88.1 10.4 35 79-119 4-38 (396)
155 TIGR01176 fum_red_Fp fumarate 98.3 3.8E-06 8.1E-11 90.6 12.0 56 368-425 357-414 (580)
156 PRK09077 L-aspartate oxidase; 98.3 7.5E-06 1.6E-10 87.8 14.3 56 368-425 353-410 (536)
157 TIGR00292 thiazole biosynthesi 98.3 3.5E-06 7.6E-11 81.0 10.5 117 79-202 21-169 (254)
158 PRK08205 sdhA succinate dehydr 98.3 5.7E-06 1.2E-10 89.6 13.3 33 79-118 5-37 (583)
159 PRK06912 acoL dihydrolipoamide 98.3 3.3E-06 7.2E-11 88.9 11.3 100 79-206 170-271 (458)
160 PRK07190 hypothetical protein; 98.3 3.1E-06 6.8E-11 89.5 11.0 34 79-118 5-38 (487)
161 PRK07494 2-octaprenyl-6-methox 98.3 2.5E-06 5.4E-11 87.8 9.9 34 79-118 7-40 (388)
162 COG0654 UbiH 2-polyprenyl-6-me 98.3 2.5E-06 5.4E-11 87.8 9.9 108 79-203 2-162 (387)
163 TIGR01988 Ubi-OHases Ubiquinon 98.3 2.4E-06 5.2E-11 87.8 9.7 33 81-119 1-33 (385)
164 PRK09126 hypothetical protein; 98.3 2.6E-06 5.6E-11 87.8 9.9 35 79-119 3-37 (392)
165 PRK11728 hydroxyglutarate oxid 98.3 2.8E-06 6.1E-11 87.6 9.8 36 79-118 2-37 (393)
166 PRK13512 coenzyme A disulfide 98.3 3.2E-06 7E-11 88.4 10.4 96 79-206 148-244 (438)
167 PRK07236 hypothetical protein; 98.3 4.2E-06 9.2E-11 86.1 11.0 36 78-119 5-40 (386)
168 TIGR01424 gluta_reduc_2 glutat 98.3 4.3E-06 9.3E-11 87.7 11.2 100 79-206 166-266 (446)
169 TIGR01984 UbiH 2-polyprenyl-6- 98.3 2.6E-06 5.6E-11 87.5 9.3 33 81-119 1-34 (382)
170 PRK06126 hypothetical protein; 98.3 1.4E-05 3E-10 86.1 15.3 38 77-120 5-42 (545)
171 TIGR02028 ChlP geranylgeranyl 98.3 3E-06 6.6E-11 87.4 9.7 33 80-118 1-33 (398)
172 PRK08244 hypothetical protein; 98.3 4.4E-06 9.4E-11 88.9 11.1 34 79-118 2-35 (493)
173 COG0445 GidA Flavin-dependent 98.3 4.8E-06 1E-10 85.2 10.5 110 79-203 4-158 (621)
174 PRK08626 fumarate reductase fl 98.3 9.7E-06 2.1E-10 88.6 13.7 58 368-426 372-431 (657)
175 PRK06116 glutathione reductase 98.3 5E-06 1.1E-10 87.4 11.1 101 79-206 167-268 (450)
176 PRK07045 putative monooxygenas 98.3 5.1E-06 1.1E-10 85.6 10.9 36 78-119 4-39 (388)
177 PRK06327 dihydrolipoamide dehy 98.3 5.3E-06 1.1E-10 87.8 11.0 100 79-206 183-287 (475)
178 PRK05732 2-octaprenyl-6-methox 98.2 4.1E-06 8.9E-11 86.4 9.8 36 79-117 3-38 (395)
179 PRK09897 hypothetical protein; 98.2 8.5E-06 1.8E-10 86.4 12.2 35 80-118 2-36 (534)
180 PRK05249 soluble pyridine nucl 98.2 6.2E-06 1.3E-10 87.0 11.3 100 79-206 175-275 (461)
181 PRK09564 coenzyme A disulfide 98.2 5.7E-06 1.2E-10 86.8 10.9 99 79-205 149-248 (444)
182 PRK05868 hypothetical protein; 98.2 6.6E-06 1.4E-10 84.2 11.0 33 80-118 2-34 (372)
183 TIGR01320 mal_quin_oxido malat 98.2 6.9E-05 1.5E-09 79.1 18.7 35 80-118 1-35 (483)
184 KOG1336 Monodehydroascorbate/f 98.2 6.2E-06 1.3E-10 83.2 10.1 106 79-209 213-319 (478)
185 PRK06183 mhpA 3-(3-hydroxyphen 98.2 2E-05 4.4E-10 84.7 15.0 38 77-120 8-45 (538)
186 PRK06370 mercuric reductase; V 98.2 8E-06 1.7E-10 86.2 11.6 102 79-206 171-274 (463)
187 PRK08013 oxidoreductase; Provi 98.2 5.2E-06 1.1E-10 85.8 10.1 35 79-119 3-37 (400)
188 PRK06996 hypothetical protein; 98.2 4.7E-06 1E-10 86.1 9.7 40 77-118 9-48 (398)
189 PRK07588 hypothetical protein; 98.2 5.2E-06 1.1E-10 85.6 9.8 34 80-119 1-34 (391)
190 COG1252 Ndh NADH dehydrogenase 98.2 3.7E-06 7.9E-11 85.1 8.1 100 79-204 155-263 (405)
191 TIGR02374 nitri_red_nirB nitri 98.2 5.9E-06 1.3E-10 92.4 10.6 100 79-205 140-240 (785)
192 TIGR01421 gluta_reduc_1 glutat 98.2 8.2E-06 1.8E-10 85.6 11.0 101 79-206 166-268 (450)
193 PRK11259 solA N-methyltryptoph 98.2 5.6E-06 1.2E-10 84.8 9.5 34 79-118 3-36 (376)
194 PRK05257 malate:quinone oxidor 98.2 6.4E-05 1.4E-09 79.5 17.6 37 79-119 5-41 (494)
195 COG1635 THI4 Ribulose 1,5-bisp 98.2 1.7E-06 3.6E-11 78.5 4.7 38 79-122 30-67 (262)
196 PRK08849 2-octaprenyl-3-methyl 98.2 6.3E-06 1.4E-10 84.8 9.8 33 80-118 4-36 (384)
197 PRK08850 2-octaprenyl-6-methox 98.2 6.9E-06 1.5E-10 85.1 10.1 33 79-117 4-36 (405)
198 COG3380 Predicted NAD/FAD-depe 98.2 3.9E-06 8.4E-11 78.5 7.2 33 80-118 2-34 (331)
199 PRK06753 hypothetical protein; 98.2 6.8E-06 1.5E-10 84.1 10.0 33 81-119 2-34 (373)
200 PF04820 Trp_halogenase: Trypt 98.2 5.3E-06 1.2E-10 86.8 9.3 53 143-204 160-212 (454)
201 TIGR02053 MerA mercuric reduct 98.2 8.1E-06 1.8E-10 86.1 10.7 100 79-206 166-269 (463)
202 TIGR01377 soxA_mon sarcosine o 98.2 5.6E-06 1.2E-10 84.9 9.2 33 80-118 1-33 (380)
203 PRK07846 mycothione reductase; 98.2 1.1E-05 2.5E-10 84.6 11.6 100 79-207 166-266 (451)
204 PLN02507 glutathione reductase 98.2 8.8E-06 1.9E-10 86.4 10.8 100 79-206 203-303 (499)
205 PRK06185 hypothetical protein; 98.2 9.5E-06 2.1E-10 84.1 10.9 35 78-118 5-39 (407)
206 PRK07845 flavoprotein disulfid 98.2 9.5E-06 2.1E-10 85.6 11.0 100 79-206 177-277 (466)
207 PRK12409 D-amino acid dehydrog 98.2 2.3E-05 5.1E-10 81.3 13.6 34 80-119 2-35 (410)
208 TIGR02734 crtI_fam phytoene de 98.2 1.2E-05 2.6E-10 85.8 11.6 35 82-122 1-35 (502)
209 PRK06481 fumarate reductase fl 98.2 2.6E-05 5.6E-10 83.1 14.1 36 78-119 60-95 (506)
210 PRK08132 FAD-dependent oxidore 98.2 3.2E-05 6.9E-10 83.4 14.8 38 77-120 21-58 (547)
211 PRK14694 putative mercuric red 98.2 1.2E-05 2.6E-10 85.0 11.2 98 79-206 178-276 (468)
212 PRK07818 dihydrolipoamide dehy 98.2 1.1E-05 2.4E-10 85.2 10.9 100 79-206 172-276 (466)
213 PRK07512 L-aspartate oxidase; 98.2 1.3E-05 2.8E-10 85.4 11.5 57 368-425 341-398 (513)
214 COG3075 GlpB Anaerobic glycero 98.2 1.9E-05 4.2E-10 75.8 11.3 134 264-426 259-419 (421)
215 TIGR03364 HpnW_proposed FAD de 98.1 7.4E-06 1.6E-10 83.6 9.1 33 80-118 1-33 (365)
216 PRK11445 putative oxidoreducta 98.1 9.4E-06 2E-10 82.4 9.7 32 80-118 2-33 (351)
217 COG0446 HcaD Uncharacterized N 98.1 9.2E-06 2E-10 84.0 9.8 102 79-204 136-238 (415)
218 PTZ00318 NADH dehydrogenase-li 98.1 1E-05 2.2E-10 84.3 10.1 99 80-204 174-281 (424)
219 TIGR01423 trypano_reduc trypan 98.1 1.7E-05 3.7E-10 83.8 11.4 104 79-206 187-291 (486)
220 TIGR03452 mycothione_red mycot 98.1 1.8E-05 3.8E-10 83.2 11.4 100 79-207 169-269 (452)
221 TIGR03219 salicylate_mono sali 98.1 9.3E-06 2E-10 84.4 9.2 34 81-119 2-35 (414)
222 PRK13339 malate:quinone oxidor 98.1 0.00011 2.5E-09 77.2 17.2 38 77-118 4-41 (497)
223 PRK08243 4-hydroxybenzoate 3-m 98.1 1.7E-05 3.7E-10 81.8 11.0 34 79-118 2-35 (392)
224 TIGR00275 flavoprotein, HI0933 98.1 6.6E-06 1.4E-10 84.9 7.9 42 373-417 357-399 (400)
225 PRK06617 2-octaprenyl-6-methox 98.1 1.2E-05 2.5E-10 82.5 9.6 32 80-117 2-33 (374)
226 PRK14989 nitrite reductase sub 98.1 1.1E-05 2.5E-10 90.3 10.0 102 79-205 145-247 (847)
227 PRK06115 dihydrolipoamide dehy 98.1 2.1E-05 4.5E-10 83.0 11.3 100 79-206 174-279 (466)
228 TIGR03169 Nterm_to_SelD pyridi 98.1 1.7E-05 3.6E-10 81.0 10.1 99 79-204 145-244 (364)
229 PRK08010 pyridine nucleotide-d 98.1 2.2E-05 4.8E-10 82.3 11.2 99 79-206 158-257 (441)
230 TIGR02360 pbenz_hydroxyl 4-hyd 98.1 1.7E-05 3.7E-10 81.7 9.9 34 79-118 2-35 (390)
231 PTZ00052 thioredoxin reductase 98.1 2.3E-05 5E-10 83.3 10.9 100 79-207 182-282 (499)
232 PRK00711 D-amino acid dehydrog 98.1 0.0002 4.3E-09 74.4 17.8 32 81-118 2-33 (416)
233 TIGR01789 lycopene_cycl lycope 98.0 2E-05 4.4E-10 80.4 9.8 34 81-118 1-34 (370)
234 COG0665 DadA Glycine/D-amino a 98.0 2.2E-05 4.7E-10 80.7 9.9 36 77-118 2-37 (387)
235 PRK01747 mnmC bifunctional tRN 98.0 1.8E-05 3.8E-10 87.3 9.8 33 80-118 261-293 (662)
236 PTZ00058 glutathione reductase 98.0 2.8E-05 6.2E-10 83.2 10.9 101 79-206 237-339 (561)
237 COG1232 HemY Protoporphyrinoge 98.0 0.00011 2.4E-09 75.6 14.5 37 80-120 1-37 (444)
238 PRK13748 putative mercuric red 98.0 2.7E-05 5.9E-10 84.2 10.8 98 79-206 270-368 (561)
239 PRK14727 putative mercuric red 98.0 3.1E-05 6.7E-10 82.0 10.8 98 79-206 188-286 (479)
240 COG1231 Monoamine oxidase [Ami 98.0 3.1E-05 6.8E-10 78.1 10.1 42 77-124 5-46 (450)
241 PRK06475 salicylate hydroxylas 98.0 2.6E-05 5.6E-10 80.7 9.9 34 79-118 2-35 (400)
242 PF12831 FAD_oxidored: FAD dep 98.0 5.1E-06 1.1E-10 86.5 4.6 34 81-120 1-34 (428)
243 PLN02985 squalene monooxygenas 98.0 5.4E-05 1.2E-09 80.5 12.1 36 77-118 41-76 (514)
244 PRK06292 dihydrolipoamide dehy 98.0 4.3E-05 9.2E-10 80.6 10.9 100 79-206 169-271 (460)
245 PF01946 Thi4: Thi4 family; PD 97.9 6.7E-06 1.5E-10 75.1 3.5 37 79-121 17-53 (230)
246 PRK10262 thioredoxin reductase 97.9 5.3E-05 1.2E-09 75.9 10.3 98 79-205 146-250 (321)
247 TIGR01438 TGR thioredoxin and 97.9 5.1E-05 1.1E-09 80.3 10.4 99 79-206 180-282 (484)
248 TIGR01373 soxB sarcosine oxida 97.9 4.6E-05 1E-09 79.0 9.9 36 78-118 29-65 (407)
249 PF13450 NAD_binding_8: NAD(P) 97.9 1.6E-05 3.5E-10 59.8 4.7 31 84-120 1-31 (68)
250 PRK06467 dihydrolipoamide dehy 97.9 5.7E-05 1.2E-09 79.8 10.4 99 79-206 174-277 (471)
251 TIGR01989 COQ6 Ubiquinone bios 97.9 4E-05 8.7E-10 80.2 9.2 36 80-117 1-36 (437)
252 PRK13369 glycerol-3-phosphate 97.9 4.7E-05 1E-09 81.1 9.5 35 78-118 5-39 (502)
253 KOG2820 FAD-dependent oxidored 97.9 5.3E-05 1.2E-09 73.1 8.6 36 77-118 5-40 (399)
254 PLN02546 glutathione reductase 97.9 7.9E-05 1.7E-09 79.9 10.6 101 79-206 252-353 (558)
255 PRK11101 glpA sn-glycerol-3-ph 97.8 6.8E-05 1.5E-09 80.6 10.0 34 79-118 6-39 (546)
256 PTZ00153 lipoamide dehydrogena 97.8 7.9E-05 1.7E-09 81.1 10.2 103 79-207 312-431 (659)
257 TIGR01292 TRX_reduct thioredox 97.8 0.00018 4E-09 70.9 12.0 97 79-204 141-239 (300)
258 PF06039 Mqo: Malate:quinone o 97.8 0.00015 3.3E-09 73.5 11.0 68 266-357 184-252 (488)
259 PRK12266 glpD glycerol-3-phosp 97.8 9.7E-05 2.1E-09 78.7 10.2 35 78-118 5-39 (508)
260 TIGR01813 flavo_cyto_c flavocy 97.8 0.00011 2.4E-09 77.0 10.5 32 81-118 1-33 (439)
261 COG2907 Predicted NAD/FAD-bind 97.8 0.00058 1.3E-08 66.4 13.9 38 78-122 7-44 (447)
262 KOG2853 Possible oxidoreductas 97.8 8.8E-05 1.9E-09 71.6 8.2 39 78-118 85-123 (509)
263 PTZ00367 squalene epoxidase; P 97.8 0.0002 4.4E-09 76.8 11.8 35 78-118 32-66 (567)
264 PLN02612 phytoene desaturase 97.8 0.00056 1.2E-08 73.9 15.2 38 77-120 91-128 (567)
265 PRK06175 L-aspartate oxidase; 97.7 0.00022 4.7E-09 74.5 10.1 55 368-425 331-388 (433)
266 COG2509 Uncharacterized FAD-de 97.6 0.0013 2.8E-08 66.4 14.5 72 254-354 164-235 (486)
267 PRK12770 putative glutamate sy 97.6 0.00032 6.9E-09 71.2 10.4 103 79-205 172-288 (352)
268 KOG0029 Amine oxidase [Seconda 97.6 6E-05 1.3E-09 79.2 5.1 41 76-122 12-52 (501)
269 PRK08294 phenol 2-monooxygenas 97.6 0.00041 8.8E-09 75.8 11.7 36 78-118 31-66 (634)
270 PRK07573 sdhA succinate dehydr 97.6 0.00045 9.8E-09 75.5 11.7 35 78-118 34-68 (640)
271 COG1206 Gid NAD(FAD)-utilizing 97.6 0.00073 1.6E-08 65.2 11.4 50 372-430 324-373 (439)
272 TIGR03140 AhpF alkyl hydropero 97.6 0.00037 8.1E-09 74.4 10.7 94 79-205 352-452 (515)
273 PRK07057 sdhA succinate dehydr 97.5 0.00052 1.1E-08 74.5 11.1 35 78-118 11-45 (591)
274 KOG2495 NADH-dehydrogenase (ub 97.5 9.6E-05 2.1E-09 73.6 4.1 103 79-205 218-331 (491)
275 PTZ00363 rab-GDP dissociation 97.5 0.0092 2E-07 62.2 18.7 38 79-122 4-41 (443)
276 COG3349 Uncharacterized conser 97.4 0.00014 2.9E-09 74.9 4.7 40 80-125 1-40 (485)
277 PLN02927 antheraxanthin epoxid 97.4 0.0002 4.2E-09 77.7 6.2 36 77-118 79-114 (668)
278 PRK11749 dihydropyrimidine deh 97.4 0.00073 1.6E-08 71.2 10.4 104 78-204 272-388 (457)
279 KOG1335 Dihydrolipoamide dehyd 97.4 0.00058 1.3E-08 67.1 8.7 100 79-205 211-316 (506)
280 TIGR01316 gltA glutamate synth 97.4 0.001 2.3E-08 69.7 11.4 104 79-205 272-389 (449)
281 COG1233 Phytoene dehydrogenase 97.4 0.00017 3.8E-09 76.3 5.0 36 79-120 3-38 (487)
282 KOG2415 Electron transfer flav 97.4 0.00015 3.2E-09 71.8 4.0 47 76-122 73-119 (621)
283 PRK11883 protoporphyrinogen ox 97.4 0.00018 3.9E-09 75.5 5.0 38 80-121 1-38 (451)
284 PRK12831 putative oxidoreducta 97.4 0.0013 2.9E-08 69.2 11.1 35 78-118 280-314 (464)
285 PF06100 Strep_67kDa_ant: Stre 97.4 0.0013 2.8E-08 67.7 10.5 38 79-118 2-39 (500)
286 PLN02268 probable polyamine ox 97.4 0.00022 4.7E-09 74.7 5.2 38 80-123 1-38 (435)
287 PRK05335 tRNA (uracil-5-)-meth 97.3 0.00026 5.6E-09 72.3 5.0 49 373-430 321-369 (436)
288 PRK15317 alkyl hydroperoxide r 97.3 0.0017 3.7E-08 69.5 11.5 94 79-205 351-451 (517)
289 KOG2614 Kynurenine 3-monooxyge 97.3 0.00097 2.1E-08 66.6 8.6 34 79-118 2-35 (420)
290 PRK07208 hypothetical protein; 97.3 0.00028 6.1E-09 74.8 5.3 39 78-122 3-41 (479)
291 PRK12416 protoporphyrinogen ox 97.2 0.00036 7.7E-09 73.7 5.4 43 80-122 2-44 (463)
292 PLN02576 protoporphyrinogen ox 97.2 0.00037 8E-09 74.3 5.5 39 79-122 12-50 (496)
293 TIGR03143 AhpF_homolog putativ 97.2 0.0028 6E-08 68.4 12.1 97 79-205 143-248 (555)
294 TIGR00562 proto_IX_ox protopor 97.2 0.00035 7.5E-09 73.7 5.0 40 79-120 2-41 (462)
295 PRK07233 hypothetical protein; 97.2 0.00035 7.6E-09 72.9 4.9 36 81-122 1-36 (434)
296 PF00070 Pyr_redox: Pyridine n 97.2 0.0022 4.7E-08 49.8 8.0 47 247-293 24-70 (80)
297 PRK01438 murD UDP-N-acetylmura 97.2 0.00058 1.3E-08 72.4 6.2 86 79-214 16-101 (480)
298 PRK07538 hypothetical protein; 97.2 0.00042 9E-09 72.0 4.8 34 80-119 1-34 (413)
299 PLN02172 flavin-containing mon 97.1 0.00099 2.1E-08 69.9 7.2 91 79-209 204-294 (461)
300 KOG2852 Possible oxidoreductas 97.1 0.0022 4.7E-08 60.9 8.6 42 77-118 8-49 (380)
301 KOG2311 NAD/FAD-utilizing prot 97.1 0.00083 1.8E-08 67.8 6.1 45 375-428 381-425 (679)
302 PLN02529 lysine-specific histo 97.1 0.0011 2.3E-08 72.9 7.3 55 57-121 142-196 (738)
303 PRK12778 putative bifunctional 97.1 0.0029 6.2E-08 70.9 10.7 105 79-205 570-688 (752)
304 TIGR01372 soxA sarcosine oxida 97.1 0.0026 5.5E-08 73.3 10.5 94 79-205 317-413 (985)
305 PRK12810 gltD glutamate syntha 97.1 0.0046 1E-07 65.3 11.7 110 79-205 281-402 (471)
306 TIGR02733 desat_CrtD C-3',4' d 97.0 0.00069 1.5E-08 72.1 5.0 35 80-120 2-36 (492)
307 TIGR00031 UDP-GALP_mutase UDP- 97.0 0.00085 1.8E-08 68.2 5.3 35 80-120 2-36 (377)
308 PRK09853 putative selenate red 97.0 0.006 1.3E-07 69.0 12.2 107 79-205 668-781 (1019)
309 KOG1346 Programmed cell death 97.0 0.0014 3.1E-08 65.0 6.3 106 78-206 346-452 (659)
310 KOG1298 Squalene monooxygenase 97.0 0.0024 5.2E-08 63.0 7.6 35 77-117 43-77 (509)
311 KOG0685 Flavin-containing amin 96.9 0.00086 1.9E-08 68.0 4.5 38 79-121 21-58 (498)
312 PRK08274 tricarballylate dehyd 96.9 0.00099 2.1E-08 70.4 5.3 59 367-425 398-462 (466)
313 TIGR02731 phytoene_desat phyto 96.9 0.00084 1.8E-08 70.6 4.7 36 81-122 1-36 (453)
314 PF00890 FAD_binding_2: FAD bi 96.9 0.00094 2E-08 69.4 4.7 33 81-119 1-33 (417)
315 PLN02328 lysine-specific histo 96.9 0.0022 4.7E-08 71.0 7.4 39 77-121 236-274 (808)
316 PRK07121 hypothetical protein; 96.9 0.0018 3.8E-08 69.0 6.3 36 78-119 19-54 (492)
317 PLN02568 polyamine oxidase 96.9 0.0015 3.2E-08 70.0 5.7 42 79-121 5-46 (539)
318 PF00732 GMC_oxred_N: GMC oxid 96.8 0.0012 2.6E-08 65.2 4.6 38 80-122 1-38 (296)
319 TIGR01318 gltD_gamma_fam gluta 96.8 0.0092 2E-07 63.0 11.1 105 79-205 282-400 (467)
320 PLN02676 polyamine oxidase 96.8 0.0021 4.6E-08 68.1 6.3 38 79-122 26-64 (487)
321 TIGR02485 CobZ_N-term precorri 96.8 0.0047 1E-07 64.5 8.7 54 368-424 368-430 (432)
322 PLN02487 zeta-carotene desatur 96.8 0.0028 6E-08 68.0 7.0 37 78-120 74-110 (569)
323 PRK12842 putative succinate de 96.8 0.0019 4E-08 70.1 5.7 39 76-120 6-44 (574)
324 PLN00128 Succinate dehydrogena 96.7 0.0027 5.8E-08 69.4 6.6 34 79-118 50-83 (635)
325 TIGR02730 carot_isom carotene 96.7 0.0017 3.6E-08 69.2 4.8 34 80-119 1-34 (493)
326 TIGR03315 Se_ygfK putative sel 96.7 0.014 3.1E-07 66.3 12.0 107 78-205 665-778 (1012)
327 TIGR02732 zeta_caro_desat caro 96.6 0.0019 4.2E-08 68.2 4.7 35 81-121 1-35 (474)
328 PRK08255 salicylyl-CoA 5-hydro 96.6 0.002 4.4E-08 72.1 4.9 35 81-119 2-36 (765)
329 PRK08641 sdhA succinate dehydr 96.6 0.0022 4.8E-08 69.6 4.8 58 367-425 354-411 (589)
330 PRK12814 putative NADPH-depend 96.6 0.018 3.8E-07 63.4 11.8 36 78-118 322-357 (652)
331 KOG2404 Fumarate reductase, fl 96.6 0.0088 1.9E-07 57.7 7.9 32 81-118 11-42 (477)
332 PRK12837 3-ketosteroid-delta-1 96.6 0.0025 5.4E-08 68.1 4.8 34 79-119 7-40 (513)
333 PF13434 K_oxygenase: L-lysine 96.5 0.0059 1.3E-07 61.5 7.2 39 77-119 188-226 (341)
334 COG0562 Glf UDP-galactopyranos 96.5 0.0033 7.2E-08 60.7 4.9 36 80-121 2-37 (374)
335 PLN02464 glycerol-3-phosphate 96.5 0.003 6.5E-08 69.0 5.3 36 78-119 70-105 (627)
336 KOG1276 Protoporphyrinogen oxi 96.5 0.0033 7.2E-08 62.9 5.0 40 77-120 9-48 (491)
337 KOG2665 Predicted FAD-dependen 96.5 0.014 3E-07 56.3 8.7 38 77-118 46-83 (453)
338 PRK09078 sdhA succinate dehydr 96.5 0.0032 6.9E-08 68.5 5.2 35 78-118 11-45 (598)
339 PRK12779 putative bifunctional 96.4 0.016 3.5E-07 66.1 10.5 34 79-118 447-480 (944)
340 PRK12834 putative FAD-binding 96.4 0.0036 7.7E-08 67.5 5.0 34 79-118 4-37 (549)
341 PTZ00139 Succinate dehydrogena 96.4 0.0035 7.7E-08 68.3 5.0 34 79-118 29-62 (617)
342 COG0492 TrxB Thioredoxin reduc 96.3 0.038 8.3E-07 54.6 11.3 92 79-205 143-240 (305)
343 TIGR02061 aprA adenosine phosp 96.3 0.0041 8.9E-08 67.5 4.7 45 375-426 400-444 (614)
344 PRK12835 3-ketosteroid-delta-1 96.3 0.0045 9.6E-08 67.2 4.9 35 79-119 11-45 (584)
345 PRK08958 sdhA succinate dehydr 96.3 0.0044 9.6E-08 67.2 4.7 34 79-118 7-40 (588)
346 PRK12839 hypothetical protein; 96.2 0.0061 1.3E-07 65.9 5.5 37 77-119 6-42 (572)
347 TIGR01317 GOGAT_sm_gam glutama 96.2 0.023 4.9E-07 60.3 9.7 37 78-119 282-318 (485)
348 PRK12769 putative oxidoreducta 96.2 0.031 6.8E-07 61.6 11.1 104 79-204 468-585 (654)
349 PRK12844 3-ketosteroid-delta-1 96.2 0.0055 1.2E-07 66.1 5.0 35 79-119 6-40 (557)
350 PRK07843 3-ketosteroid-delta-1 96.2 0.0066 1.4E-07 65.5 5.5 36 79-120 7-42 (557)
351 PRK02106 choline dehydrogenase 96.2 0.0067 1.5E-07 65.6 5.4 36 79-119 5-40 (560)
352 COG1251 NirB NAD(P)H-nitrite r 96.1 0.01 2.2E-07 63.6 6.2 99 79-204 145-244 (793)
353 KOG3923 D-aspartate oxidase [A 96.1 0.017 3.7E-07 55.3 6.8 41 78-118 2-43 (342)
354 TIGR02462 pyranose_ox pyranose 96.0 0.012 2.6E-07 62.6 6.5 36 80-121 1-36 (544)
355 TIGR01470 cysG_Nterm siroheme 96.0 0.018 4E-07 53.4 7.0 34 79-118 9-42 (205)
356 PLN02815 L-aspartate oxidase 96.0 0.0074 1.6E-07 65.4 4.8 55 368-424 377-433 (594)
357 PRK13984 putative oxidoreducta 96.0 0.052 1.1E-06 59.4 11.5 37 79-115 418-454 (604)
358 PRK12845 3-ketosteroid-delta-1 96.0 0.011 2.3E-07 63.9 5.9 39 77-122 14-52 (564)
359 PLN03000 amine oxidase 95.9 0.011 2.3E-07 65.9 5.6 39 78-122 183-221 (881)
360 PRK07395 L-aspartate oxidase; 95.9 0.0092 2E-07 64.2 4.9 34 79-119 9-42 (553)
361 TIGR01811 sdhA_Bsu succinate d 95.9 0.0068 1.5E-07 65.9 3.9 54 368-424 370-425 (603)
362 PRK06134 putative FAD-binding 95.8 0.014 3E-07 63.4 6.0 37 78-120 11-47 (581)
363 PTZ00306 NADH-dependent fumara 95.8 0.013 2.8E-07 68.7 6.0 36 78-119 408-443 (1167)
364 KOG2960 Protein involved in th 95.8 0.0029 6.2E-08 57.3 0.5 35 80-118 77-111 (328)
365 PRK12809 putative oxidoreducta 95.7 0.072 1.6E-06 58.6 11.2 36 79-119 451-486 (639)
366 COG2081 Predicted flavoprotein 95.7 0.17 3.6E-06 50.9 12.4 78 241-347 87-166 (408)
367 PRK12775 putative trifunctiona 95.7 0.074 1.6E-06 61.3 11.2 36 78-118 570-605 (1006)
368 COG0578 GlpA Glycerol-3-phosph 95.6 0.014 3.1E-07 61.2 5.0 40 78-123 11-50 (532)
369 COG1053 SdhA Succinate dehydro 95.6 0.014 3.1E-07 62.5 4.8 35 78-118 5-39 (562)
370 COG3573 Predicted oxidoreducta 95.5 0.11 2.3E-06 50.7 10.0 34 79-118 5-38 (552)
371 PRK12843 putative FAD-binding 95.5 0.021 4.6E-07 61.9 5.9 35 79-119 16-50 (578)
372 PLN02976 amine oxidase 95.5 0.018 3.9E-07 66.7 5.3 37 78-120 692-728 (1713)
373 COG2303 BetA Choline dehydroge 95.4 0.018 3.9E-07 61.8 5.0 36 77-118 5-40 (542)
374 PRK14106 murD UDP-N-acetylmura 95.3 0.038 8.3E-07 58.0 7.1 34 79-118 5-38 (450)
375 KOG2844 Dimethylglycine dehydr 95.3 0.057 1.2E-06 57.2 7.9 52 139-201 189-241 (856)
376 TIGR01810 betA choline dehydro 95.3 0.018 3.9E-07 62.0 4.5 34 81-119 1-34 (532)
377 PF00743 FMO-like: Flavin-bind 95.2 0.066 1.4E-06 57.3 8.2 34 79-118 183-216 (531)
378 COG0569 TrkA K+ transport syst 95.1 0.027 5.9E-07 53.1 4.7 33 80-118 1-33 (225)
379 PRK12771 putative glutamate sy 95.0 0.14 3E-06 55.5 10.4 102 79-205 267-382 (564)
380 PF13738 Pyr_redox_3: Pyridine 95.0 0.072 1.6E-06 49.1 7.2 59 263-350 82-142 (203)
381 KOG1238 Glucose dehydrogenase/ 94.8 0.059 1.3E-06 57.3 6.4 40 76-120 54-93 (623)
382 PF13241 NAD_binding_7: Putati 94.7 0.046 9.9E-07 44.7 4.2 35 78-118 6-40 (103)
383 PLN02785 Protein HOTHEAD 94.5 0.057 1.2E-06 58.5 5.6 35 78-119 54-88 (587)
384 KOG0405 Pyridine nucleotide-di 94.3 0.1 2.2E-06 51.2 6.2 103 77-206 187-290 (478)
385 PRK05562 precorrin-2 dehydroge 94.0 0.19 4.2E-06 47.0 7.4 34 78-117 24-57 (223)
386 PRK06719 precorrin-2 dehydroge 93.8 0.11 2.4E-06 46.0 5.2 34 78-117 12-45 (157)
387 KOG4254 Phytoene desaturase [C 93.7 0.062 1.3E-06 54.5 3.5 38 77-120 12-49 (561)
388 PF03486 HI0933_like: HI0933-l 93.5 0.28 6.1E-06 50.7 8.1 82 240-349 84-167 (409)
389 KOG3855 Monooxygenase involved 93.3 0.11 2.4E-06 52.1 4.6 38 78-117 35-72 (481)
390 PRK15116 sulfur acceptor prote 93.3 0.1 2.2E-06 50.4 4.2 35 79-118 30-64 (268)
391 COG3486 IucD Lysine/ornithine 93.2 0.56 1.2E-05 47.3 9.3 37 80-118 188-224 (436)
392 KOG4716 Thioredoxin reductase 93.1 0.054 1.2E-06 52.8 2.0 99 80-204 199-301 (503)
393 PRK05708 2-dehydropantoate 2-r 92.9 0.44 9.5E-06 47.2 8.3 34 79-118 2-35 (305)
394 PRK06718 precorrin-2 dehydroge 92.7 0.2 4.4E-06 46.4 5.2 33 79-117 10-42 (202)
395 PF01210 NAD_Gly3P_dh_N: NAD-d 92.6 0.17 3.7E-06 44.8 4.5 32 81-118 1-32 (157)
396 TIGR00292 thiazole biosynthesi 92.6 0.53 1.1E-05 45.3 8.2 136 263-424 100-253 (254)
397 TIGR03862 flavo_PP4765 unchara 92.0 1.3 2.8E-05 45.2 10.4 80 240-349 61-142 (376)
398 PF02737 3HCDH_N: 3-hydroxyacy 91.9 0.22 4.7E-06 45.3 4.3 32 81-118 1-32 (180)
399 PRK06847 hypothetical protein; 91.5 0.6 1.3E-05 47.6 7.7 59 263-350 107-165 (375)
400 COG1004 Ugd Predicted UDP-gluc 91.4 0.48 1E-05 47.7 6.4 33 80-118 1-33 (414)
401 PRK02705 murD UDP-N-acetylmura 91.4 0.24 5.1E-06 52.2 4.7 33 81-119 2-34 (459)
402 PRK04148 hypothetical protein; 91.4 0.34 7.3E-06 41.4 4.7 34 79-119 17-50 (134)
403 KOG0042 Glycerol-3-phosphate d 90.9 0.28 6E-06 51.0 4.3 39 78-122 66-104 (680)
404 TIGR03862 flavo_PP4765 unchara 90.7 0.8 1.7E-05 46.6 7.5 49 373-424 327-375 (376)
405 PF00899 ThiF: ThiF family; I 90.5 0.76 1.6E-05 39.4 6.3 35 79-118 2-36 (135)
406 COG3634 AhpF Alkyl hydroperoxi 90.4 1.9 4.1E-05 42.6 9.3 100 78-206 353-455 (520)
407 PF01262 AlaDh_PNT_C: Alanine 90.4 0.46 9.9E-06 42.6 4.9 34 79-118 20-53 (168)
408 PRK10669 putative cation:proto 90.4 0.4 8.6E-06 51.9 5.4 35 78-118 416-450 (558)
409 PF03721 UDPG_MGDP_dh_N: UDP-g 90.0 0.38 8.3E-06 43.8 4.1 33 80-118 1-33 (185)
410 cd00755 YgdL_like Family of ac 89.9 0.39 8.5E-06 45.4 4.2 35 79-118 11-45 (231)
411 COG2509 Uncharacterized FAD-de 89.9 0.6 1.3E-05 47.7 5.7 54 139-202 175-229 (486)
412 PF01488 Shikimate_DH: Shikima 89.7 0.65 1.4E-05 39.9 5.1 36 78-118 11-46 (135)
413 PRK08773 2-octaprenyl-3-methyl 89.6 1.2 2.5E-05 45.8 7.8 57 264-349 114-170 (392)
414 TIGR02356 adenyl_thiF thiazole 89.4 0.3 6.5E-06 45.3 2.9 35 79-118 21-55 (202)
415 PRK07333 2-octaprenyl-6-methox 89.3 1.2 2.7E-05 45.7 7.8 58 263-349 111-168 (403)
416 PF02254 TrkA_N: TrkA-N domain 88.9 0.62 1.3E-05 38.6 4.3 31 82-118 1-31 (116)
417 PRK05329 anaerobic glycerol-3- 88.8 1.8 3.9E-05 44.9 8.5 96 83-203 219-318 (422)
418 PRK06834 hypothetical protein; 88.7 1.5 3.2E-05 46.6 8.0 57 264-349 101-157 (488)
419 PRK09496 trkA potassium transp 88.0 0.71 1.5E-05 48.5 5.1 75 80-201 1-75 (453)
420 COG0686 Ald Alanine dehydrogen 88.0 0.45 9.8E-06 46.2 3.1 34 79-118 168-201 (371)
421 cd01080 NAD_bind_m-THF_DH_Cycl 87.9 1 2.2E-05 40.3 5.2 34 78-117 43-77 (168)
422 TIGR02354 thiF_fam2 thiamine b 87.9 1.2 2.5E-05 41.3 5.8 34 79-117 21-54 (200)
423 PRK06129 3-hydroxyacyl-CoA deh 87.2 0.78 1.7E-05 45.6 4.5 33 80-118 3-35 (308)
424 PF13478 XdhC_C: XdhC Rossmann 87.1 0.76 1.6E-05 39.6 3.8 32 82-119 1-32 (136)
425 PRK09424 pntA NAD(P) transhydr 87.0 0.81 1.7E-05 48.5 4.7 34 79-118 165-198 (509)
426 COG1748 LYS9 Saccharopine dehy 87.0 0.94 2E-05 46.0 4.9 35 79-118 1-35 (389)
427 TIGR00518 alaDH alanine dehydr 87.0 0.86 1.9E-05 46.5 4.7 34 79-118 167-200 (370)
428 PRK07819 3-hydroxybutyryl-CoA 87.0 1 2.2E-05 44.2 5.1 33 80-118 6-38 (286)
429 PRK03659 glutathione-regulated 86.9 0.79 1.7E-05 50.0 4.7 34 79-118 400-433 (601)
430 PRK06567 putative bifunctional 86.9 1 2.2E-05 51.1 5.5 22 79-100 550-571 (1028)
431 PF01134 GIDA: Glucose inhibit 86.9 1.1 2.4E-05 45.7 5.4 46 374-428 347-392 (392)
432 PRK08293 3-hydroxybutyryl-CoA 86.8 0.91 2E-05 44.6 4.7 33 80-118 4-36 (287)
433 cd01485 E1-1_like Ubiquitin ac 86.8 0.97 2.1E-05 41.7 4.6 35 79-118 19-53 (198)
434 cd01484 E1-2_like Ubiquitin ac 86.7 0.96 2.1E-05 42.8 4.6 33 81-118 1-33 (234)
435 PF02558 ApbA: Ketopantoate re 86.7 1.2 2.5E-05 38.9 4.9 31 82-118 1-31 (151)
436 PRK09260 3-hydroxybutyryl-CoA 86.6 0.84 1.8E-05 44.8 4.4 33 80-118 2-34 (288)
437 TIGR00275 flavoprotein, HI0933 86.6 5 0.00011 41.4 10.2 57 262-348 104-160 (400)
438 cd00757 ThiF_MoeB_HesA_family 86.6 1.5 3.2E-05 41.5 5.8 35 79-118 21-55 (228)
439 TIGR02355 moeB molybdopterin s 86.2 1.5 3.2E-05 41.9 5.6 35 79-118 24-58 (240)
440 PRK03562 glutathione-regulated 86.2 0.88 1.9E-05 49.8 4.6 34 79-118 400-433 (621)
441 PF01266 DAO: FAD dependent ox 86.0 0.55 1.2E-05 47.0 2.8 53 138-202 148-202 (358)
442 TIGR02964 xanthine_xdhC xanthi 86.0 1.3 2.8E-05 42.3 5.2 36 78-119 99-134 (246)
443 cd01489 Uba2_SUMO Ubiquitin ac 85.9 1.2 2.6E-05 44.0 5.0 33 81-118 1-33 (312)
444 PRK07066 3-hydroxybutyryl-CoA 85.9 1.4 3.1E-05 43.8 5.5 34 79-118 7-40 (321)
445 cd01483 E1_enzyme_family Super 85.7 1.9 4.2E-05 37.2 5.7 33 81-118 1-33 (143)
446 PRK05714 2-octaprenyl-3-methyl 85.6 2.7 5.9E-05 43.3 7.8 55 266-349 115-169 (405)
447 PRK00536 speE spermidine synth 85.3 1.1 2.4E-05 43.1 4.2 34 77-118 71-104 (262)
448 PRK07530 3-hydroxybutyryl-CoA 85.2 1.3 2.7E-05 43.7 4.8 33 80-118 5-37 (292)
449 cd05292 LDH_2 A subgroup of L- 85.1 1.3 2.8E-05 44.0 4.9 34 81-118 2-35 (308)
450 PRK06035 3-hydroxyacyl-CoA deh 85.1 1.2 2.6E-05 43.8 4.5 33 80-118 4-36 (291)
451 TIGR02032 GG-red-SF geranylger 85.0 3.2 7E-05 40.3 7.7 58 263-348 91-148 (295)
452 cd00401 AdoHcyase S-adenosyl-L 84.8 1.5 3.3E-05 45.2 5.3 35 78-118 201-235 (413)
453 PRK05690 molybdopterin biosynt 84.8 1.7 3.6E-05 41.6 5.3 35 79-118 32-66 (245)
454 cd05311 NAD_bind_2_malic_enz N 84.8 1.4 3.1E-05 41.5 4.7 37 79-118 25-61 (226)
455 PRK11728 hydroxyglutarate oxid 84.6 2.8 6.1E-05 43.1 7.3 58 262-349 148-205 (393)
456 TIGR03197 MnmC_Cterm tRNA U-34 84.5 1.7 3.8E-05 44.4 5.7 58 262-349 134-191 (381)
457 COG0281 SfcA Malic enzyme [Ene 84.5 1.4 3E-05 44.7 4.6 37 79-118 199-235 (432)
458 PRK05335 tRNA (uracil-5-)-meth 84.4 1.6 3.4E-05 45.1 5.2 35 79-119 2-36 (436)
459 PRK08644 thiamine biosynthesis 84.4 2.4 5.1E-05 39.6 6.0 35 79-118 28-62 (212)
460 PRK00066 ldh L-lactate dehydro 84.3 2.1 4.4E-05 42.7 5.9 37 78-118 5-41 (315)
461 TIGR03197 MnmC_Cterm tRNA U-34 84.1 1.6 3.5E-05 44.6 5.2 61 131-203 129-190 (381)
462 PRK05808 3-hydroxybutyryl-CoA 84.0 1.3 2.8E-05 43.3 4.3 33 80-118 4-36 (282)
463 TIGR01984 UbiH 2-polyprenyl-6- 84.0 3.6 7.8E-05 41.9 7.8 56 264-348 106-162 (382)
464 PRK08229 2-dehydropantoate 2-r 84.0 1.5 3.3E-05 44.1 4.8 33 79-117 2-34 (341)
465 TIGR01988 Ubi-OHases Ubiquinon 83.8 3.8 8.1E-05 41.7 7.8 57 264-349 107-164 (385)
466 PRK08306 dipicolinate synthase 83.7 1.6 3.5E-05 43.0 4.8 35 78-118 151-185 (296)
467 TIGR02061 aprA adenosine phosp 83.7 1.5 3.1E-05 48.0 4.8 36 81-118 1-36 (614)
468 cd01492 Aos1_SUMO Ubiquitin ac 83.6 2.5 5.4E-05 39.0 5.7 35 79-118 21-55 (197)
469 PTZ00082 L-lactate dehydrogena 83.5 2.3 5E-05 42.5 5.8 35 79-118 6-40 (321)
470 PRK06522 2-dehydropantoate 2-r 83.5 1.6 3.6E-05 42.9 4.8 32 81-118 2-33 (304)
471 PRK12549 shikimate 5-dehydroge 83.4 1.9 4.1E-05 42.3 5.1 36 78-118 126-161 (284)
472 PRK09126 hypothetical protein; 83.3 3.5 7.5E-05 42.2 7.3 48 274-350 122-169 (392)
473 PLN02657 3,8-divinyl protochlo 83.1 2.6 5.6E-05 43.4 6.2 35 78-118 59-94 (390)
474 PRK07190 hypothetical protein; 83.1 4 8.6E-05 43.4 7.8 55 265-348 111-165 (487)
475 TIGR02352 thiamin_ThiO glycine 83.1 3.7 8E-05 40.9 7.3 58 262-349 136-194 (337)
476 PRK11064 wecC UDP-N-acetyl-D-m 83.1 1.5 3.1E-05 45.6 4.4 33 80-118 4-36 (415)
477 PRK12475 thiamine/molybdopteri 83.1 1.8 4E-05 43.5 5.0 35 79-118 24-58 (338)
478 cd01487 E1_ThiF_like E1_ThiF_l 83.1 2.6 5.7E-05 37.9 5.5 33 81-118 1-33 (174)
479 PRK06249 2-dehydropantoate 2-r 82.9 2.2 4.8E-05 42.4 5.5 34 79-118 5-38 (313)
480 PLN02353 probable UDP-glucose 82.9 1.8 3.9E-05 45.6 5.0 35 80-118 2-36 (473)
481 TIGR01763 MalateDH_bact malate 82.9 2.1 4.5E-05 42.5 5.2 34 80-118 2-35 (305)
482 TIGR01377 soxA_mon sarcosine o 82.8 3.7 8E-05 41.8 7.3 58 262-349 144-201 (380)
483 PRK08641 sdhA succinate dehydr 82.7 2.1 4.6E-05 46.6 5.7 34 79-118 3-36 (589)
484 cd05293 LDH_1 A subgroup of L- 82.6 2.5 5.5E-05 42.0 5.7 36 79-118 3-38 (312)
485 PRK06130 3-hydroxybutyryl-CoA 82.6 2.1 4.5E-05 42.5 5.2 34 79-118 4-37 (311)
486 PRK12842 putative succinate de 82.4 2.2 4.8E-05 46.3 5.7 62 367-430 504-573 (574)
487 PF00056 Ldh_1_N: lactate/mala 82.3 3 6.4E-05 36.1 5.4 34 81-118 2-36 (141)
488 PRK08163 salicylate hydroxylas 82.3 4.1 9E-05 41.7 7.4 56 265-349 111-167 (396)
489 cd05291 HicDH_like L-2-hydroxy 82.2 2.2 4.8E-05 42.3 5.1 34 81-118 2-35 (306)
490 KOG0404 Thioredoxin reductase 82.1 7 0.00015 36.3 7.7 105 79-210 157-262 (322)
491 cd05191 NAD_bind_amino_acid_DH 82.1 3 6.5E-05 32.6 4.9 33 79-116 23-55 (86)
492 PRK06184 hypothetical protein; 82.1 4.5 9.9E-05 43.1 7.9 59 265-349 111-169 (502)
493 PRK06223 malate dehydrogenase; 82.0 2.3 5.1E-05 42.1 5.3 34 80-118 3-36 (307)
494 cd01078 NAD_bind_H4MPT_DH NADP 81.9 2.6 5.7E-05 38.5 5.2 33 79-117 28-61 (194)
495 TIGR02730 carot_isom carotene 81.8 4.1 8.8E-05 43.4 7.3 57 263-347 229-285 (493)
496 PLN02572 UDP-sulfoquinovose sy 81.6 2.9 6.2E-05 43.8 6.0 37 74-116 42-79 (442)
497 TIGR02853 spore_dpaA dipicolin 81.6 2.1 4.6E-05 41.9 4.7 35 78-118 150-184 (287)
498 PRK07688 thiamine/molybdopteri 81.6 2.3 5E-05 42.8 5.1 35 79-118 24-58 (339)
499 PRK06849 hypothetical protein; 81.5 2.2 4.8E-05 43.8 5.0 36 78-119 3-39 (389)
500 PRK06175 L-aspartate oxidase; 81.5 2.7 5.8E-05 43.9 5.7 33 79-118 4-36 (433)
No 1
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=4.1e-62 Score=485.79 Aligned_cols=360 Identities=36% Similarity=0.552 Sum_probs=321.9
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCC-eEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG-VQFFK 156 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~-v~~~~ 156 (513)
++++||||||||||+.+|..|.+.. ++++|||||++++|.|+|++++++.|.++++++..++++++++.+ ++|++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~----~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~ 77 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL----PDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQ 77 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC----CCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEE
Confidence 4689999999999999999999842 268999999999999999999999999999999999999998665 99999
Q ss_pred EeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHH-HHH
Q 010331 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS-ELE 235 (513)
Q Consensus 157 ~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~-~~~ 235 (513)
++|++||++++ +|.++++.+++||+||||+|++++++++||+.||++++++++||.+++.++. .++
T Consensus 78 ~~V~~ID~~~k-------------~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe 144 (405)
T COG1252 78 GEVTDIDRDAK-------------KVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFE 144 (405)
T ss_pred EEEEEEcccCC-------------EEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999987 5888887789999999999999999999999999999999999999999874 222
Q ss_pred hhh----------H-------------HHH----H---h-------cCcEEEEeccCeecCCCChhHHHHHHHHHHhCCc
Q 010331 236 RRN----------F-------------ERL----E---E-------KGIVQAINVETTICPTGTPGNREAALKVLSARKV 278 (513)
Q Consensus 236 ~~~----------v-------------~~l----~---~-------~~~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV 278 (513)
... + .+| . . .-+|++++..+++||.+++.+++++++.|+++||
T Consensus 145 ~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV 224 (405)
T COG1252 145 KASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGV 224 (405)
T ss_pred HhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCC
Confidence 111 1 111 1 1 1269999999999999999999999999999999
Q ss_pred EEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcce-EEeeceEEEecCCCCCCCCCCCCC
Q 010331 279 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ-IFEADLVLWTVGSKPLLPHVEPPN 357 (513)
Q Consensus 279 ~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~-~i~aD~vi~a~G~~p~~~~l~~~~ 357 (513)
+|++++.|+++++ +++.+. ++. +|+||++|||+|.+++ ++++..
T Consensus 225 ~v~l~~~Vt~v~~-------------------------~~v~~~--------~g~~~I~~~tvvWaaGv~a~-~~~~~l- 269 (405)
T COG1252 225 EVLLGTPVTEVTP-------------------------DGVTLK--------DGEEEIPADTVVWAAGVRAS-PLLKDL- 269 (405)
T ss_pred EEEcCCceEEECC-------------------------CcEEEc--------cCCeeEecCEEEEcCCCcCC-hhhhhc-
Confidence 9999999999998 455554 444 6999999999999999 666641
Q ss_pred CccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCCCCCcccCCc
Q 010331 358 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNL 437 (513)
Q Consensus 358 ~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~~~~f~~~~~ 437 (513)
.+.+.|..|++.||++||++++|+|||+|||+...++ +|.|++||.|+|||+++|+||.+.++|++++||+|+++
T Consensus 270 ---~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~--~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~~ 344 (405)
T COG1252 270 ---SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP--RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKDK 344 (405)
T ss_pred ---ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC--CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccce
Confidence 2577888999999999999999999999999999876 78999999999999999999999999999999999999
Q ss_pred eeEEEecCCCeeecCCccCCeEEccHHHHHHHHHhHhhcCCCcchhhhhHHhhhhHHHHH
Q 010331 438 GEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAID 497 (513)
Q Consensus 438 g~~~~lG~~~~~~~~~~~~~~~~~G~~~~~~k~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 497 (513)
|+++++|.+.+++. ++++.+.|.++|++|+.+|+++++.+++++++.++|++...+.
T Consensus 345 Gtl~~lG~~~av~~---~g~~~l~G~~a~~~k~~~~~~~l~~~~~~~~~~~~w~~~~~~~ 401 (405)
T COG1252 345 GTLASLGDFSAVAD---LGGVKLKGFLAWLLKRAAYLYYLLGIRSRLAVALYWLTTYLTG 401 (405)
T ss_pred EEEEEccCCceeEE---ecceeeccHHHHHHHHHHHHheecccCcHHHHHHHHhhhhhcc
Confidence 99999999999998 5578999999999999999999999999999999999887643
No 2
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=3.4e-55 Score=454.00 Aligned_cols=356 Identities=25% Similarity=0.395 Sum_probs=309.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEE
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (513)
..+++|||||||+||+.+|+.|.+ .+++|||||++++++|.|++++++.|..+.+++..+++++++..+++|++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~------~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 81 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP------KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR 81 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc------CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE
Confidence 345799999999999999999964 46799999999999999999999999988888999999988888999999
Q ss_pred EeEEEEeCCCCcCcCCCceeeccceEec----------CCceEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHH
Q 010331 157 DRVKLLCPSDHLGVNGPMACTHGGTVLL----------ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226 (513)
Q Consensus 157 ~~V~~id~~~~~~~~~~~v~~~~~~v~~----------~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~ 226 (513)
++|++||++++. |.+ +++.+++||+||||||++++.+.+||..++.+.+++++++..
T Consensus 82 ~~V~~Id~~~~~-------------v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~ 148 (424)
T PTZ00318 82 AVVYDVDFEEKR-------------VKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARG 148 (424)
T ss_pred EEEEEEEcCCCE-------------EEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHH
Confidence 999999988762 444 466789999999999999999999999889999999999998
Q ss_pred HHHHHHHH-H----------------hhhH-----------HHHHh---------------cCcEEEEeccCeecCCCCh
Q 010331 227 VDRKLSEL-E----------------RRNF-----------ERLEE---------------KGIVQAINVETTICPTGTP 263 (513)
Q Consensus 227 l~~~l~~~-~----------------~~~v-----------~~l~~---------------~~~vtli~~~~~ll~~~~~ 263 (513)
+++.+... + +.++ .++.+ ...|++++..+.+++.+++
T Consensus 149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~ 228 (424)
T PTZ00318 149 IRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQ 228 (424)
T ss_pred HHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCH
Confidence 88776432 0 1111 22221 2459999999999999999
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEe
Q 010331 264 GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 343 (513)
Q Consensus 264 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a 343 (513)
.+.+.+++.|+++||++++++.|.++.. +.+.++ +|+++++|++||+
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~-------------------------~~v~~~--------~g~~i~~d~vi~~ 275 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD-------------------------KEVVLK--------DGEVIPTGLVVWS 275 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC-------------------------CEEEEC--------CCCEEEccEEEEc
Confidence 9999999999999999999999999876 334432 6789999999999
Q ss_pred cCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010331 344 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423 (513)
Q Consensus 344 ~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~ 423 (513)
+|.+|+ +++.. ++++++++|+|.||++||++++|||||+|||+..++ .+.|++++.|++||+++|+||.+.
T Consensus 276 ~G~~~~-~~~~~-----~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~---~~~~~~~~~A~~qg~~~A~ni~~~ 346 (424)
T PTZ00318 276 TGVGPG-PLTKQ-----LKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEE---RPLPTLAQVASQQGVYLAKEFNNE 346 (424)
T ss_pred cCCCCc-chhhh-----cCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCC---CCCCCchHHHHHHHHHHHHHHHHH
Confidence 999998 56653 357788899999999999889999999999998742 456899999999999999999999
Q ss_pred HCCCC-CCCcccCCceeEEEecCCCeeecCCccCCeEEccHHHHHHHHHhHhhcCCCcchhhhhHHhhhhHHHH
Q 010331 424 INDRP-LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRLPTDEHRLKVGVSWLTKSAI 496 (513)
Q Consensus 424 l~~~~-~~~f~~~~~g~~~~lG~~~~~~~~~~~~~~~~~G~~~~~~k~~~~~~~~~~~~~~~~~~~~w~~~~~~ 496 (513)
+.+++ ++||.|...|.++++|+++|+++ ++++.++|+++|++|+.+|+.++|+++++++++++|+++..+
T Consensus 347 l~g~~~~~~~~~~~~g~~~~lG~~~av~~---~~~~~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 417 (424)
T PTZ00318 347 LKGKPMSKPFVYRSLGSLAYLGNYSAIVQ---LGAFDLSGFKALLFWRSAYLTILGSWRSKLYVLVNWAGTAIF 417 (424)
T ss_pred hcCCCCCCCCeecCCceEEEecCCceEEE---cCCceEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 99886 89999999999999999999998 567999999999999999999999999999999999987653
No 3
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=3.4e-52 Score=402.06 Aligned_cols=365 Identities=25% Similarity=0.377 Sum_probs=304.8
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCC--Ce
Q 010331 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANT--GV 152 (513)
Q Consensus 75 ~~~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~--~v 152 (513)
....+++|||+|+|++|.+.+..|.. ..++|++|++++||.|+|+++....|.++.+.+.+|++.+.++. ++
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldt------s~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~ 124 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDT------SLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEV 124 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccc------cccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCc
Confidence 44567899999999999999999976 66799999999999999999999999999999999999998775 68
Q ss_pred EEEEEeEEEEeCCCCcCcCCCceeeccceEecCCc----eEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHH
Q 010331 153 QFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG----LIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD 228 (513)
Q Consensus 153 ~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g----~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~ 228 (513)
.|++++...||++.+ .|.|. ..++++ ..+.|||||+|+|++++.+++||+.||+++++.++||++++
T Consensus 125 ~y~eAec~~iDp~~k------~V~~~---s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR 195 (491)
T KOG2495|consen 125 KYLEAECTKIDPDNK------KVHCR---SLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIR 195 (491)
T ss_pred eEEecccEeeccccc------EEEEe---eeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHH
Confidence 999999999998876 34332 223344 47999999999999999999999999999999999999998
Q ss_pred HHH-HHHHhhhH------------------------------------------HHHHhcCcEEEEeccCeecCCCChhH
Q 010331 229 RKL-SELERRNF------------------------------------------ERLEEKGIVQAINVETTICPTGTPGN 265 (513)
Q Consensus 229 ~~l-~~~~~~~v------------------------------------------~~l~~~~~vtli~~~~~ll~~~~~~~ 265 (513)
..+ .+++++.+ .++.+.-.||+++..+.+|+.++..+
T Consensus 196 ~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl 275 (491)
T KOG2495|consen 196 RKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRL 275 (491)
T ss_pred HHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHH
Confidence 765 34433321 22233446999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecC
Q 010331 266 REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 345 (513)
Q Consensus 266 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G 345 (513)
.+++++.+.+.||++.+++.|..+.+. .+.+... + ++-++||+.+++|+||
T Consensus 276 ~~yae~~f~~~~I~~~~~t~Vk~V~~~-------------------------~I~~~~~---~-g~~~~iPYG~lVWatG 326 (491)
T KOG2495|consen 276 VEYAENQFVRDGIDLDTGTMVKKVTEK-------------------------TIHAKTK---D-GEIEEIPYGLLVWATG 326 (491)
T ss_pred HHHHHHHhhhccceeecccEEEeecCc-------------------------EEEEEcC---C-CceeeecceEEEecCC
Confidence 999999999999999999999998873 3444432 2 2458999999999999
Q ss_pred CCCCCCCCCCCCCccCCCccCCCC--CeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010331 346 SKPLLPHVEPPNNRLHDLPLNARG--QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423 (513)
Q Consensus 346 ~~p~~~~l~~~~~~~~~~~~~~~G--~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~ 423 (513)
..|. ++... +...+++.| .+.||++||+++.+||||+|||+..+ ..+++||.|.|||.++|+|+...
T Consensus 327 ~~~r-p~~k~-----lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~-----~~~~tAQVA~QqG~yLAk~fn~m 395 (491)
T KOG2495|consen 327 NGPR-PVIKD-----LMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQR-----GLKPTAQVAEQQGAYLAKNFNKM 395 (491)
T ss_pred CCCc-hhhhh-----HhhcCCccCceeeeeeceeeccCcCceEEeccccccc-----cCccHHHHHHHHHHHHHHHHHHH
Confidence 9987 45442 233456666 89999999999999999999999542 34679999999999999998765
Q ss_pred HCCC----------------CCCCcccCCceeEEEecCCCeeecCCccCC-eEEccHHHHHHHHHhHhhcCCCcchhhhh
Q 010331 424 INDR----------------PLLPFRFQNLGEMMILGRNDAAVSPSFVEG-VTLDGPIGHSARKLAYLIRLPTDEHRLKV 486 (513)
Q Consensus 424 l~~~----------------~~~~f~~~~~g~~~~lG~~~~~~~~~~~~~-~~~~G~~~~~~k~~~~~~~~~~~~~~~~~ 486 (513)
.+.. ..+||+|.++|.+++||+..++++++ .+. +...|..++++|+.+|+.++-+||+|+++
T Consensus 396 ~k~~~~~e~~~~r~~~~~~~~f~PF~Y~H~GalA~lG~ekaiAdl~-~g~~~~~~G~~s~~lWrS~Yls~~~S~R~R~lV 474 (491)
T KOG2495|consen 396 GKGGNLPEGPSARLRGEGRHQFKPFKYKHLGALAYLGREKAIADLP-VGKMWVSAGGSSFWLWRSAYLSKLVSWRNRFLV 474 (491)
T ss_pred hcccCCCccchhhhhhhhhhccCCcccccccceeeccccchhhcCc-cCCeeeeccchhhHHHHHHHHHHhhhhhhheee
Confidence 4321 13899999999999999999999865 244 89999999999999999999999999999
Q ss_pred HHhhhhHHH
Q 010331 487 GVSWLTKSA 495 (513)
Q Consensus 487 ~~~w~~~~~ 495 (513)
+.||+.-+.
T Consensus 475 ~~dW~~~~~ 483 (491)
T KOG2495|consen 475 AIDWEKTFF 483 (491)
T ss_pred eeheeeeEE
Confidence 999987654
No 4
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=1.1e-45 Score=376.74 Aligned_cols=336 Identities=26% Similarity=0.349 Sum_probs=280.0
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEEeEE
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVK 160 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~V~ 160 (513)
+|||||||+||+.+|.+|++.. .++.+|+|||+++++.|.+.++.++.|..+++++..++++++++++++|++++|+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~---~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~ 77 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP---LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEAT 77 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC---CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEE
Confidence 5999999999999999997642 2678999999999999999988888888777888888889888889999999999
Q ss_pred EEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHH-HH----
Q 010331 161 LLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-LE---- 235 (513)
Q Consensus 161 ~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~-~~---- 235 (513)
.||++++ .|.+++|++++||+||||||++++.+.+||..++.+.+++.+++...+..+.. .+
T Consensus 78 ~id~~~~-------------~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (364)
T TIGR03169 78 GIDPDRR-------------KVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPG 144 (364)
T ss_pred EEecccC-------------EEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCC
Confidence 9998876 58888888899999999999999999999988888889999988875554422 21
Q ss_pred --hhhH-----------HHHH----hc---CcEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccc
Q 010331 236 --RRNF-----------ERLE----EK---GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 295 (513)
Q Consensus 236 --~~~v-----------~~l~----~~---~~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~ 295 (513)
+..+ ..+. +. ..|+++ ..+.+++.+++...+.+++.|+++||++++++.+.+++.
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~---- 219 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD---- 219 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC----
Confidence 1111 2222 22 268888 567778888888889999999999999999999988864
Q ss_pred cccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCC
Q 010331 296 EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE 375 (513)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~ 375 (513)
+.+.+. +++++++|.+|||+|.+|+ +++.. .+++++++|+|.||+
T Consensus 220 ---------------------~~v~~~--------~g~~i~~D~vi~a~G~~p~-~~l~~-----~gl~~~~~g~i~vd~ 264 (364)
T TIGR03169 220 ---------------------GALILA--------DGRTLPADAILWATGARAP-PWLAE-----SGLPLDEDGFLRVDP 264 (364)
T ss_pred ---------------------CeEEeC--------CCCEEecCEEEEccCCChh-hHHHH-----cCCCcCCCCeEEECC
Confidence 323332 6788999999999999998 45543 256778889999999
Q ss_pred CccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCCCCCcccC-CceeEEEecCCCeeecCCc
Q 010331 376 TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQ-NLGEMMILGRNDAAVSPSF 454 (513)
Q Consensus 376 ~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~~~~f~~~-~~g~~~~lG~~~~~~~~~~ 454 (513)
++|+.++|+|||+|||+..++ .+.+++++.|++||+++|+||.+.+.++++++|++. ..++++++|++.|+++
T Consensus 265 ~l~~~~~~~Iya~GD~~~~~~---~~~~~~~~~A~~~g~~~a~ni~~~l~g~~~~~~~~~~~~~~~~~~G~~~~v~~--- 338 (364)
T TIGR03169 265 TLQSLSHPHVFAAGDCAVITD---APRPKAGVYAVRQAPILAANLRASLRGQPLRPFRPQRDYLQLLNTGDRRAVAS--- 338 (364)
T ss_pred ccccCCCCCEEEeeeeeecCC---CCCCCchHHHHHhHHHHHHHHHHHhcCCCCCCCcccccceeEEEcCCCcEEEe---
Confidence 999889999999999998743 356889999999999999999999999999999874 5689999999999886
Q ss_pred cCCeEEccHHHHHHHHHhHhhcCC
Q 010331 455 VEGVTLDGPIGHSARKLAYLIRLP 478 (513)
Q Consensus 455 ~~~~~~~G~~~~~~k~~~~~~~~~ 478 (513)
++++.+.|+++|++|..+..++|-
T Consensus 339 ~~~~~~~~~~~~~~k~~~~~~~~~ 362 (364)
T TIGR03169 339 WGWIIGPGRWLWRLKDWIDRRFMR 362 (364)
T ss_pred ecceeecCccHHHHHHHHhHHHHh
Confidence 567999999999999987665553
No 5
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=3.8e-36 Score=309.39 Aligned_cols=311 Identities=19% Similarity=0.224 Sum_probs=233.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc-CCch-hhhhhccccCCcchHhHHHHhcCCCeEEEE
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF-KPML-YELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~-~p~~-~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (513)
.++|||||||+||++||..|++.+ .+.+|+|||++++++| .|.+ ..++.+.... .......+++...+++++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~----~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~ 77 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQG----FTGELHLFSDERHLPYERPPLSKSMLLEDSPQ-LQQVLPANWWQENNVHLHS 77 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhC----CCCCEEEeCCCCCCCCCCCCCCHHHHCCCCcc-ccccCCHHHHHHCCCEEEc
Confidence 368999999999999999999864 4569999999988877 3433 4454443221 1111123455677999998
Q ss_pred E-eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCc-cccCCCCCCHHHHHHHHHHHHHH
Q 010331 157 D-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGA-AEFAFPFSTLEDACRVDRKLSEL 234 (513)
Q Consensus 157 ~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~-~~~~~~~~~~~~a~~l~~~l~~~ 234 (513)
+ .|..||++.+ .|.+++|.++.||+||||||++++.+++++. .++++.+++.+++..++..+...
T Consensus 78 g~~V~~id~~~~-------------~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~ 144 (396)
T PRK09754 78 GVTIKTLGRDTR-------------ELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPE 144 (396)
T ss_pred CCEEEEEECCCC-------------EEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcC
Confidence 7 7999998776 4778888899999999999999987766653 45677888999998888766543
Q ss_pred HhhhH-----------HHHHhcC-cEEEEeccCeecCC-CChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccC
Q 010331 235 ERRNF-----------ERLEEKG-IVQAINVETTICPT-GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQ 301 (513)
Q Consensus 235 ~~~~v-----------~~l~~~~-~vtli~~~~~ll~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~ 301 (513)
++.++ ..+...+ .|+++++.+.+++. .++...+.+.+.++++||++++++.+.++...
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~--------- 215 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDG--------- 215 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcC---------
Confidence 33332 3444444 59999999888875 57778888899999999999999999998752
Q ss_pred CCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccC
Q 010331 302 PESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKG 381 (513)
Q Consensus 302 ~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~ 381 (513)
+.+.+.+. +|++++||.||+++|.+||+.++... ++.. +|.|.||+++|+ +
T Consensus 216 ---------------~~~~v~l~------~g~~i~aD~Vv~a~G~~pn~~l~~~~-----gl~~--~~gi~vd~~~~t-s 266 (396)
T PRK09754 216 ---------------EKVELTLQ------SGETLQADVVIYGIGISANDQLAREA-----NLDT--ANGIVIDEACRT-C 266 (396)
T ss_pred ---------------CEEEEEEC------CCCEEECCEEEECCCCChhhHHHHhc-----CCCc--CCCEEECCCCcc-C
Confidence 23334443 67789999999999999998766532 4444 356999999998 8
Q ss_pred CCCEEEEcccccccCCCCCC-CCCchHHHHHHHHHHHHHHHHHHCCCCCCCcccCCc-e-eEEEecC
Q 010331 382 HPRIFALGDSSALRDSSGRP-LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNL-G-EMMILGR 445 (513)
Q Consensus 382 ~p~VfaiGD~a~~~~~~g~~-~~~~a~~A~~qg~~~a~ni~~~l~~~~~~~f~~~~~-g-~~~~lG~ 445 (513)
.|+|||+|||+..+++.|.+ .+.+++.|.+||+++|+||.+.....+..||.|... | .+.++|.
T Consensus 267 ~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~~~~p~~~~~~~~~~~~~~G~ 333 (396)
T PRK09754 267 DPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGD 333 (396)
T ss_pred CCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCCCCCCCceEEEeCCccEEEeeC
Confidence 99999999999876654432 256889999999999999987544455567777653 3 4677774
No 6
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=5.4e-35 Score=304.32 Aligned_cols=285 Identities=19% Similarity=0.263 Sum_probs=219.4
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCC-chhhhhhccccCCc-c-hHhHHHHhcCCCeEEEE
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-MLYELLSGEVDAWE-I-APRFADLLANTGVQFFK 156 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p-~~~~~~~g~~~~~~-~-~~~~~~~~~~~~v~~~~ 156 (513)
++|||||||+||++||..|+++ .++.+|+|||+++++.|.+ .++.+..+.....+ . ......+.++.+++++.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~----~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 77 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRL----DKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKT 77 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhh----CCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEe
Confidence 5899999999999999999874 3678999999999988876 66766665443322 2 22234455667999876
Q ss_pred -EeEEEEeCCCCcCcCCCceeeccceEecCCc-----eEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHH
Q 010331 157 -DRVKLLCPSDHLGVNGPMACTHGGTVLLESG-----LIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230 (513)
Q Consensus 157 -~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g-----~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~ 230 (513)
++|+.||++++ .|.+.++ .+++||+||||||++++.|++++ ++.+.+++++++..+++.
T Consensus 78 ~~~V~~Id~~~~-------------~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 142 (438)
T PRK13512 78 YHEVIAINDERQ-------------TVTVLNRKTNEQFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQF 142 (438)
T ss_pred CCEEEEEECCCC-------------EEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHH
Confidence 69999998876 3544332 25789999999999998776653 455667888888887776
Q ss_pred HHHH--HhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEecccccc
Q 010331 231 LSEL--ERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296 (513)
Q Consensus 231 l~~~--~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~ 296 (513)
+... ++..+ ..+...+ .|+++++.+.+++.+++.+.+.+.+.|+++||++++++.+.+++.
T Consensus 143 l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~----- 217 (438)
T PRK13512 143 IKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING----- 217 (438)
T ss_pred HhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC-----
Confidence 5432 12221 3444444 599999999999988999999999999999999999999999864
Q ss_pred ccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCC
Q 010331 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 376 (513)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~ 376 (513)
..+.++ +++++++|.|+||+|.+||++++.. .+++++++|+|.||++
T Consensus 218 --------------------~~v~~~--------~g~~~~~D~vl~a~G~~pn~~~l~~-----~gl~~~~~G~i~Vd~~ 264 (438)
T PRK13512 218 --------------------NEVTFK--------SGKVEHYDMIIEGVGTHPNSKFIES-----SNIKLDDKGFIPVNDK 264 (438)
T ss_pred --------------------CEEEEC--------CCCEEEeCEEEECcCCCcChHHHHh-----cCcccCCCCcEEECCC
Confidence 223332 5678999999999999999888754 3677888899999999
Q ss_pred ccccCCCCEEEEcccccccCC-CCC-CCCCchHHHHHHHHHHHHHHHH
Q 010331 377 LCVKGHPRIFALGDSSALRDS-SGR-PLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 377 l~~~~~p~VfaiGD~a~~~~~-~g~-~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
+|+ ++|||||+|||+..++. .+. ..+++++.|.+||+++|+||.+
T Consensus 265 ~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g 311 (438)
T PRK13512 265 FET-NVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAG 311 (438)
T ss_pred ccc-CCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcC
Confidence 998 89999999999975332 122 2357888999999999999975
No 7
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=7.1e-35 Score=298.28 Aligned_cols=285 Identities=20% Similarity=0.264 Sum_probs=222.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc-CCchhhhhhccccCCcchH-hHHHHhcCCCeEEEE
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF-KPMLYELLSGEVDAWEIAP-RFADLLANTGVQFFK 156 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~-~p~~~~~~~g~~~~~~~~~-~~~~~~~~~~v~~~~ 156 (513)
+++|||||||+||+++|..|++. +++.+||||++++++.| .|.++..+.+...++++.. ...+++++++++++.
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~----~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 77 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQ----DAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFP 77 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhh----CcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEEC
Confidence 46899999999999999999885 36789999999987655 6777777776655555554 456677788999986
Q ss_pred E-eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHH
Q 010331 157 D-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (513)
Q Consensus 157 ~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~ 235 (513)
+ +|+.||++.+ .|.+ ++.+++||+||||||+++..|++||... .+.+++++++..++..+...+
T Consensus 78 ~~~V~~id~~~~-------------~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~~~~~ 142 (377)
T PRK04965 78 HTWVTDIDAEAQ-------------VVKS-QGNQWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQLRDAQ 142 (377)
T ss_pred CCEEEEEECCCC-------------EEEE-CCeEEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHhhcCC
Confidence 5 8999998765 3665 4558999999999999999999999654 667788888877766654333
Q ss_pred hhhH-----------HHHHhcC-cEEEEeccCeecCC-CChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCC
Q 010331 236 RRNF-----------ERLEEKG-IVQAINVETTICPT-GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQP 302 (513)
Q Consensus 236 ~~~v-----------~~l~~~~-~vtli~~~~~ll~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~ 302 (513)
+..+ ..|...+ .|+++++.+.+++. +++...+.+++.+++.||++++++.+.++..++
T Consensus 143 ~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--------- 213 (377)
T PRK04965 143 RVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--------- 213 (377)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccC---------
Confidence 3322 3444444 59999998888876 477788888999999999999999999998643
Q ss_pred CcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCC
Q 010331 303 ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGH 382 (513)
Q Consensus 303 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~ 382 (513)
+.+.+.+. ++++++||.||+|+|.+|++.+++.. +++.+ +| |.||+++|+ +.
T Consensus 214 --------------~~~~v~~~------~g~~i~~D~vI~a~G~~p~~~l~~~~-----gl~~~-~g-i~vd~~l~t-s~ 265 (377)
T PRK04965 214 --------------SGIRATLD------SGRSIEVDAVIAAAGLRPNTALARRA-----GLAVN-RG-IVVDSYLQT-SA 265 (377)
T ss_pred --------------CEEEEEEc------CCcEEECCEEEECcCCCcchHHHHHC-----CCCcC-CC-EEECCCccc-CC
Confidence 33334442 67889999999999999998766543 45554 45 999999998 89
Q ss_pred CCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010331 383 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423 (513)
Q Consensus 383 p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~ 423 (513)
|||||+|||+..++ ... +.++.|.+||+++|+||.+.
T Consensus 266 ~~VyA~GD~a~~~~---~~~-~~~~~a~~~g~~~a~n~~g~ 302 (377)
T PRK04965 266 PDIYALGDCAEING---QVL-PFLQPIQLSAMALAKNLLGQ 302 (377)
T ss_pred CCEEEeeecEeECC---cee-ehHHHHHHHHHHHHHHhcCC
Confidence 99999999998742 222 35677999999999999763
No 8
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=6.7e-35 Score=305.25 Aligned_cols=289 Identities=22% Similarity=0.293 Sum_probs=220.5
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCC-chhhhhhcccc-CCcchHhHHHHhcCCCeEEEE-E
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-MLYELLSGEVD-AWEIAPRFADLLANTGVQFFK-D 157 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p-~~~~~~~g~~~-~~~~~~~~~~~~~~~~v~~~~-~ 157 (513)
+|||||||+||+++|..|++++ .+.+|+|||+++++.|.+ .++.+..+... +.++.....+.+++.+++++. .
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~----~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 77 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN----KELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEH 77 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC----CCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecC
Confidence 7999999999999999999853 467999999999988876 34544444322 223333444556678999875 5
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecC---CceEEE--ecEEEEeCCCCCCCCCCCCcc-ccCCCCCCHHHHHHHHHHH
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLE---SGLIVE--YDWLVLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKL 231 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~---~g~~i~--yD~LVlAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~l~~~l 231 (513)
+|+.|+++++ .|.+. ++..++ ||+||||||++++.|.+||+. ++.+.+++.+++.++++.+
T Consensus 78 ~V~~id~~~~-------------~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l 144 (444)
T PRK09564 78 EVVKVDAKNK-------------TITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELL 144 (444)
T ss_pred EEEEEECCCC-------------EEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHH
Confidence 9999988776 24443 244566 999999999999999999974 5666778888888887766
Q ss_pred HHH--HhhhH-----------HHHHhcC-cEEEEeccCeecC-CCChhHHHHHHHHHHhCCcEEEcCceeeEEecccccc
Q 010331 232 SEL--ERRNF-----------ERLEEKG-IVQAINVETTICP-TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 296 (513)
Q Consensus 232 ~~~--~~~~v-----------~~l~~~~-~vtli~~~~~ll~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~ 296 (513)
... ++.++ ..+...+ .|++++..+.+++ .+++.+.+.+.+.+++.||++++++++.++..++
T Consensus 145 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--- 221 (444)
T PRK09564 145 KDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGED--- 221 (444)
T ss_pred hhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCC---
Confidence 432 22221 3444443 4999998888877 4788889999999999999999999999996532
Q ss_pred ccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCC
Q 010331 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 376 (513)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~ 376 (513)
....+.+ ++.+++||.+|+|+|..|++++++. .+++++++|+|.||++
T Consensus 222 --------------------~~~~v~~-------~~~~i~~d~vi~a~G~~p~~~~l~~-----~gl~~~~~g~i~vd~~ 269 (444)
T PRK09564 222 --------------------KVEGVVT-------DKGEYEADVVIVATGVKPNTEFLED-----TGLKTLKNGAIIVDEY 269 (444)
T ss_pred --------------------cEEEEEe-------CCCEEEcCEEEECcCCCcCHHHHHh-----cCccccCCCCEEECCC
Confidence 1112222 3447999999999999999888764 3577788899999999
Q ss_pred ccccCCCCEEEEcccccccCC-CCC-CCCCchHHHHHHHHHHHHHHHH
Q 010331 377 LCVKGHPRIFALGDSSALRDS-SGR-PLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 377 l~~~~~p~VfaiGD~a~~~~~-~g~-~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
+|+ ++|||||+|||+..+++ .++ ..+++++.|++||+++|+||..
T Consensus 270 ~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g 316 (444)
T PRK09564 270 GET-SIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAG 316 (444)
T ss_pred ccc-CCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcC
Confidence 998 89999999999987554 222 3478999999999999999985
No 9
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.6e-34 Score=318.40 Aligned_cols=291 Identities=16% Similarity=0.235 Sum_probs=232.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCC-chhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-MLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p-~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
+++|||||+|+||+.+|..|.+... ..+++||||++++++.|.+ .++.++.+. ..+++.....+++++.+++++.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~--~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~l~~~~~~~~~~~gI~~~~g 79 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKAD--AANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEELSLVREGFYEKHGIKVLVG 79 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCC--CCCCeEEEEECCCCCcccCCcchHhHcCC-CHHHccCCCHHHHHhCCCEEEcC
Confidence 3589999999999999999987532 2578999999999988866 566666553 44555555667788889999987
Q ss_pred -eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCccc-cCCCCCCHHHHHHHHHHHHHHH
Q 010331 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAE-FAFPFSTLEDACRVDRKLSELE 235 (513)
Q Consensus 158 -~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~-~~~~~~~~~~a~~l~~~l~~~~ 235 (513)
+|+.||++.+ .|.+.+|.+++||+||||||+.|..|++||... +++.+++++++..++..+...+
T Consensus 80 ~~V~~Id~~~~-------------~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k 146 (847)
T PRK14989 80 ERAITINRQEK-------------VIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSK 146 (847)
T ss_pred CEEEEEeCCCc-------------EEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCC
Confidence 6999988766 477888888999999999999999999999754 4667889999988877665444
Q ss_pred hhhH-----------HHHHhcC-cEEEEeccCeecC-CCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCC
Q 010331 236 RRNF-----------ERLEEKG-IVQAINVETTICP-TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQP 302 (513)
Q Consensus 236 ~~~v-----------~~l~~~~-~vtli~~~~~ll~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~ 302 (513)
+.++ ..|...+ .|++++..+.+++ .+++...+.+.+.|+++||+++++..+.++..++..
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~------- 219 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVE------- 219 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCC-------
Confidence 3332 4445444 4999999998887 478888899999999999999999999999753210
Q ss_pred CcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCC
Q 010331 303 ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGH 382 (513)
Q Consensus 303 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~ 382 (513)
....+.+. +|+++++|+||+++|++||++++.. .|++++++|+|.||+++|+ +.
T Consensus 220 --------------~~~~v~~~------dG~~i~~D~Vv~A~G~rPn~~L~~~-----~Gl~~~~~G~I~VD~~l~T-s~ 273 (847)
T PRK14989 220 --------------ARKTMRFA------DGSELEVDFIVFSTGIRPQDKLATQ-----CGLAVAPRGGIVINDSCQT-SD 273 (847)
T ss_pred --------------ceEEEEEC------CCCEEEcCEEEECCCcccCchHHhh-----cCccCCCCCcEEECCCCcC-CC
Confidence 12223332 7789999999999999999876553 4678889999999999999 89
Q ss_pred CCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 383 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 383 p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
|+|||+|||+..++ ....++..|..||+++|.||.+
T Consensus 274 p~IYAiGD~a~~~~----~~~gl~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 274 PDIYAIGECASWNN----RVFGLVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred CCEEEeecceeEcC----cccccHHHHHHHHHHHHHHhcC
Confidence 99999999998743 2234778899999999999975
No 10
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=8.3e-34 Score=313.19 Aligned_cols=284 Identities=17% Similarity=0.265 Sum_probs=229.2
Q ss_pred EEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCC-chhhhhhccccCCcchHhHHHHhcCCCeEEEEE-eE
Q 010331 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-MLYELLSGEVDAWEIAPRFADLLANTGVQFFKD-RV 159 (513)
Q Consensus 82 VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p-~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~V 159 (513)
|||||||+||+++|..|+++.. .+++|||||+++++.|.+ .++.++.|....+++..+..+++++.+++++.+ +|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~---~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V 77 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNR---HMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETV 77 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCC---CCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeE
Confidence 6999999999999999988642 578999999999987764 577788877777777777788888899999987 89
Q ss_pred EEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCcc-ccCCCCCCHHHHHHHHHHHHHHHhhh
Q 010331 160 KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKLSELERRN 238 (513)
Q Consensus 160 ~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~l~~~l~~~~~~~ 238 (513)
+.||++.+ .|.+.+|.+++||+||||||+.++.|++||.. ++++.+++++++..+++.+...++.+
T Consensus 78 ~~Id~~~k-------------~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vv 144 (785)
T TIGR02374 78 IQIDTDQK-------------QVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAA 144 (785)
T ss_pred EEEECCCC-------------EEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEE
Confidence 99998876 58888888999999999999999999999975 35677889999988887665444333
Q ss_pred H-----------HHHHhcC-cEEEEeccCeecCC-CChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcc
Q 010331 239 F-----------ERLEEKG-IVQAINVETTICPT-GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 305 (513)
Q Consensus 239 v-----------~~l~~~~-~vtli~~~~~ll~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~ 305 (513)
+ ..|...+ .|++++..+.+++. +++...+.+.+.++++||++++++.+.++..++
T Consensus 145 VVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~------------ 212 (785)
T TIGR02374 145 VIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGAT------------ 212 (785)
T ss_pred EECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCC------------
Confidence 2 4555554 49999998888764 678888888999999999999999999887643
Q ss_pred cccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCE
Q 010331 306 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 385 (513)
Q Consensus 306 ~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~V 385 (513)
....+.+. +|+++++|+||+++|++||++++... +++.+ |.|.||+++|+ +.|+|
T Consensus 213 -----------~~~~v~~~------dG~~i~~D~Vi~a~G~~Pn~~la~~~-----gl~~~--ggI~Vd~~~~T-s~p~I 267 (785)
T TIGR02374 213 -----------KADRIRFK------DGSSLEADLIVMAAGIRPNDELAVSA-----GIKVN--RGIIVNDSMQT-SDPDI 267 (785)
T ss_pred -----------ceEEEEEC------CCCEEEcCEEEECCCCCcCcHHHHhc-----CCccC--CCEEECCCccc-CCCCE
Confidence 11223332 67899999999999999998776533 45554 66999999998 89999
Q ss_pred EEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 386 FALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 386 faiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
||+|||+..++ .....+..|.+||+++|.||.+
T Consensus 268 yA~GD~a~~~~----~~~gl~~~a~~qa~vaA~ni~g 300 (785)
T TIGR02374 268 YAVGECAEHNG----RVYGLVAPLYEQAKVLADHICG 300 (785)
T ss_pred EEeeecceeCC----cccccHHHHHHHHHHHHHHhcC
Confidence 99999998743 1234677799999999999975
No 11
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=5e-32 Score=282.88 Aligned_cols=275 Identities=21% Similarity=0.280 Sum_probs=200.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccC-------C---chhh-----hh---h--c----c-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-------P---MLYE-----LL---S--G----E- 133 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~-------p---~~~~-----~~---~--g----~- 133 (513)
++||+||||||||++||..++++| .+|+|||+.. +..+ | ++.. .. . | .
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G------~~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 74 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHG------AKVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKA 74 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC------CcEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCC
Confidence 479999999999999999999955 4999999853 1111 1 0000 00 0 0 0
Q ss_pred -ccC-----------CcchHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCC
Q 010331 134 -VDA-----------WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201 (513)
Q Consensus 134 -~~~-----------~~~~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs 201 (513)
.+. ..+...++..+++.+++++.+++..++++.. .+. .+|.+++||+||||||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v-------------~v~-~~g~~~~~d~lIiATGs 140 (446)
T TIGR01424 75 RFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTV-------------EVL-QDGTTYTAKKILIAVGG 140 (446)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEE-------------EEe-cCCeEEEcCEEEEecCC
Confidence 000 1123344556677899999999998876532 232 35668999999999999
Q ss_pred CCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHHH
Q 010331 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREAA 269 (513)
Q Consensus 202 ~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~~ 269 (513)
+|+.|++||.+. . .+.+++..+... .++..+ ..+...+ .|+++++.+.+++.+++.+.+.+
T Consensus 141 ~p~~p~i~G~~~-~---~~~~~~~~l~~~---~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l 213 (446)
T TIGR01424 141 RPQKPNLPGHEL-G---ITSNEAFHLPTL---PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALL 213 (446)
T ss_pred cCCCCCCCCccc-e---echHHhhccccc---CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHH
Confidence 999999998632 1 223343332211 111111 3334443 59999999999998899999999
Q ss_pred HHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCC
Q 010331 270 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 349 (513)
Q Consensus 270 ~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~ 349 (513)
.+.|++.||++++++.+.++...+ +++.+.+. +++++++|.||+|+|.+||
T Consensus 214 ~~~l~~~gV~i~~~~~v~~i~~~~-----------------------~~~~v~~~------~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 214 ARNMEGRGIRIHPQTSLTSITKTD-----------------------DGLKVTLS------HGEEIVADVVLFATGRSPN 264 (446)
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcC-----------------------CeEEEEEc------CCcEeecCEEEEeeCCCcC
Confidence 999999999999999999997643 33444432 5678999999999999999
Q ss_pred CCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 350 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
++.+... ..+++++++|+|.||+++|+ +.|||||+|||+.. +.++..|.+||+++|.||..
T Consensus 265 ~~~l~l~---~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~--------~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 265 TKGLGLE---AAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDR--------INLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CCcCCcc---ccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCC--------ccchhHHHHHHHHHHHHHhc
Confidence 8764322 34678888999999999999 89999999999975 67899999999999999974
No 12
>PLN02507 glutathione reductase
Probab=100.00 E-value=2.4e-31 Score=280.25 Aligned_cols=278 Identities=18% Similarity=0.222 Sum_probs=202.2
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC---------CCc----------ccCCchhhhh--------
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS---------ERF----------VFKPMLYELL-------- 130 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~---------~~~----------~~~p~~~~~~-------- 130 (513)
.++|||||||||||+.||..++++| .+|+|||+. ..+ +.+.+++...
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G------~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~ 97 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFG------AKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDA 97 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCC------CeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999954 499999961 111 1111111000
Q ss_pred --hcc-------ccCCcch-----------HhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCce--
Q 010331 131 --SGE-------VDAWEIA-----------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL-- 188 (513)
Q Consensus 131 --~g~-------~~~~~~~-----------~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~-- 188 (513)
.|. .+...+. ..++.++...+++++++++..++++.. .|.+++|+
T Consensus 98 ~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v-------------~V~~~~g~~~ 164 (499)
T PLN02507 98 KNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEV-------------EVTQLDGTKL 164 (499)
T ss_pred HhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEE-------------EEEeCCCcEE
Confidence 000 0000111 112344556799999999999987653 46666764
Q ss_pred EEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCe
Q 010331 189 IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETT 256 (513)
Q Consensus 189 ~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ 256 (513)
++.||+||||||+++..|.+||... . .+.+++..+.... ++..+ ..+...+ .|+++++.+.
T Consensus 165 ~~~~d~LIIATGs~p~~p~ipG~~~-~---~~~~~~~~l~~~~---k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 237 (499)
T PLN02507 165 RYTAKHILIATGSRAQRPNIPGKEL-A---ITSDEALSLEELP---KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL 237 (499)
T ss_pred EEEcCEEEEecCCCCCCCCCCCccc-e---echHHhhhhhhcC---CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence 5889999999999999999999632 1 2344544433211 11111 3344443 5999999888
Q ss_pred ecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEe
Q 010331 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 336 (513)
Q Consensus 257 ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~ 336 (513)
+++.+++.+.+.+.+.|+++||++++++.+.++...+ +++.+.+. ++++++
T Consensus 238 ~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~-----------------------~~~~v~~~------~g~~i~ 288 (499)
T PLN02507 238 PLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTE-----------------------GGIKVITD------HGEEFV 288 (499)
T ss_pred cCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-----------------------CeEEEEEC------CCcEEE
Confidence 8888899999999999999999999999999997643 33444432 567899
Q ss_pred eceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHH
Q 010331 337 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 416 (513)
Q Consensus 337 aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~ 416 (513)
+|.|++++|++||++++... ..+++++++|+|.||+++|+ +.|||||+|||+.. +.+++.|.+||+++
T Consensus 289 ~D~vl~a~G~~pn~~~l~l~---~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~~~--------~~l~~~A~~qg~~a 356 (499)
T PLN02507 289 ADVVLFATGRAPNTKRLNLE---AVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVTNR--------INLTPVALMEGTCF 356 (499)
T ss_pred cCEEEEeecCCCCCCCCCch---hhCcEECCCCcEecCCCCcC-CCCCEEEeeEcCCC--------CccHHHHHHHHHHH
Confidence 99999999999998875321 34678888999999999998 99999999999975 56889999999999
Q ss_pred HHHHHH
Q 010331 417 GWNLWA 422 (513)
Q Consensus 417 a~ni~~ 422 (513)
|+||..
T Consensus 357 a~ni~g 362 (499)
T PLN02507 357 AKTVFG 362 (499)
T ss_pred HHHHcC
Confidence 999974
No 13
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.8e-31 Score=277.28 Aligned_cols=280 Identities=21% Similarity=0.280 Sum_probs=198.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccC----Cchhh-----------hh-----hc------
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK----PMLYE-----------LL-----SG------ 132 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~----p~~~~-----------~~-----~g------ 132 (513)
.+|||||||||||++||..|+++ +.+|+|||+++ +... ...|. .. .|
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~------G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~ 76 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQL------GLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENV 76 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHC------CCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCC
Confidence 58999999999999999999985 45999999876 2111 00000 00 00
Q ss_pred cccCCcch-----------HhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEec-CCceEEEecEEEEeCC
Q 010331 133 EVDAWEIA-----------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLL-ESGLIVEYDWLVLSLG 200 (513)
Q Consensus 133 ~~~~~~~~-----------~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~-~~g~~i~yD~LVlAtG 200 (513)
..+..++. ..+...+++.+++++.++++.+++... .|.. +++.++.||+||||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~-------------~v~~~~~~~~~~~d~lViAtG 143 (462)
T PRK06416 77 GIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTV-------------RVMTEDGEQTYTAKNIILATG 143 (462)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEE-------------EEecCCCcEEEEeCEEEEeCC
Confidence 00111111 224455667899999999988865432 3443 2336899999999999
Q ss_pred CCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHH
Q 010331 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREA 268 (513)
Q Consensus 201 s~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~ 268 (513)
+++.. +||.......+.+.+++..+.... ++..+ ..+...+ .|+++++.+.+++.+++.+.+.
T Consensus 144 s~p~~--~pg~~~~~~~v~~~~~~~~~~~~~---~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~ 218 (462)
T PRK06416 144 SRPRE--LPGIEIDGRVIWTSDEALNLDEVP---KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKL 218 (462)
T ss_pred CCCCC--CCCCCCCCCeEEcchHhhCccccC---CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHH
Confidence 99864 356532222333445554333211 11111 3444444 4999999999999999999999
Q ss_pred HHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCC
Q 010331 269 ALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 348 (513)
Q Consensus 269 ~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p 348 (513)
+.+.|+++||++++++.+.+++.++ +.+.+.+. .+++.+++++|.||+|+|.+|
T Consensus 219 l~~~l~~~gV~i~~~~~V~~i~~~~-----------------------~~v~v~~~---~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 219 AERALKKRGIKIKTGAKAKKVEQTD-----------------------DGVTVTLE---DGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeC-----------------------CEEEEEEE---eCCeeEEEEeCEEEEeeCCcc
Confidence 9999999999999999999997643 33444432 111226799999999999999
Q ss_pred CCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 349 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
+++++... ..+++++ +|+|.||+++|+ +.|+|||+|||+.. ++++..|.+||+++|.||.+
T Consensus 273 ~~~~l~l~---~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~~--------~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 273 NTENLGLE---ELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVGG--------PMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CCCCCCch---hcCCeec-CCEEeECCCCcc-CCCCEEEeeecCCC--------cchHHHHHHHHHHHHHHHcC
Confidence 98876311 3467777 899999999997 89999999999975 67899999999999999975
No 14
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=1.3e-31 Score=280.40 Aligned_cols=274 Identities=20% Similarity=0.316 Sum_probs=197.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccC-------C---chh---------hhh--hcc----
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-------P---MLY---------ELL--SGE---- 133 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~-------p---~~~---------~~~--~g~---- 133 (513)
.+||+||||||||++||..|+++| .+|+|||+.. +..+ | +++ .+. .|.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G------~~V~liE~~~-~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~ 76 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYG------AKVALIEAKR-LGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTE 76 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC------CeEEEEeccc-hhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCC
Confidence 479999999999999999999954 4999999863 1110 0 000 000 000
Q ss_pred --ccCC-----------cchHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCC
Q 010331 134 --VDAW-----------EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200 (513)
Q Consensus 134 --~~~~-----------~~~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtG 200 (513)
.+.. .+...+.+.+.+.++++++++++.+++. +|.+ ++++++||+||||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~---------------~v~~-~g~~~~~d~lViATG 140 (450)
T PRK06116 77 NKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAH---------------TVEV-NGERYTADHILIATG 140 (450)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCC---------------EEEE-CCEEEEeCEEEEecC
Confidence 0000 1122234445667999999998888642 3555 566899999999999
Q ss_pred CCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHH
Q 010331 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREA 268 (513)
Q Consensus 201 s~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~ 268 (513)
++|+.|++||.. +++ +.++...+... .++..+ ..+...+ .|+++++.+.+++.+++.+.+.
T Consensus 141 s~p~~p~i~g~~-~~~---~~~~~~~~~~~---~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 213 (450)
T PRK06116 141 GRPSIPDIPGAE-YGI---TSDGFFALEEL---PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRET 213 (450)
T ss_pred CCCCCCCCCCcc-eeE---chhHhhCcccc---CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHH
Confidence 999999999863 222 22222211110 011111 3344433 5999999888888889999999
Q ss_pred HHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCC
Q 010331 269 ALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 348 (513)
Q Consensus 269 ~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p 348 (513)
+.+.|+++||++++++.+.+++.+++ +.+.+.+. +|+++++|.||+|+|.+|
T Consensus 214 l~~~L~~~GV~i~~~~~V~~i~~~~~----------------------g~~~v~~~------~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 214 LVEEMEKKGIRLHTNAVPKAVEKNAD----------------------GSLTLTLE------DGETLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHHHHCCcEEECCCEEEEEEEcCC----------------------ceEEEEEc------CCcEEEeCEEEEeeCCCc
Confidence 99999999999999999999976431 22444432 567899999999999999
Q ss_pred CCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 349 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
+++.+... ..+++++++|+|.||+++|+ ++|||||+|||+.. ++++..|++||+++|+||..
T Consensus 266 ~~~~l~l~---~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 266 NTDGLGLE---NAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGR--------VELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCCCCCch---hcCceECCCCcEecCCCCCc-CCCCEEEEeecCCC--------cCcHHHHHHHHHHHHHHHhC
Confidence 98865322 34678889999999999998 89999999999865 67889999999999999975
No 15
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.98 E-value=1.3e-30 Score=272.33 Aligned_cols=279 Identities=16% Similarity=0.201 Sum_probs=198.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcc-cC----Cchhh---hhhcc--ccCC-------cchH
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV-FK----PMLYE---LLSGE--VDAW-------EIAP 141 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~-~~----p~~~~---~~~g~--~~~~-------~~~~ 141 (513)
.+||||||||+||++||.+|+++ +.+|+|||+.+... .+ ...+. ..... .+.. ++..
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~------g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~ 76 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA------GWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVN 76 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC------CCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 47999999999999999999995 45999999976421 11 11111 00000 0000 0111
Q ss_pred hH-----HHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCce-EEEecEEEEeCCCCCCCCCCCCccccC
Q 010331 142 RF-----ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL-IVEYDWLVLSLGAEPKLDVVPGAAEFA 215 (513)
Q Consensus 142 ~~-----~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~-~i~yD~LVlAtGs~~~~~~ipG~~~~~ 215 (513)
.+ .++.+..+++++++++..++.... .|.+.++. ++.||+||||||+++..|++||+.+..
T Consensus 77 ~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~-------------~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~ 143 (441)
T PRK08010 77 FLRNKNFHNLADMPNIDVIDGQAEFINNHSL-------------RVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTP 143 (441)
T ss_pred HHHHhHHHHHhhcCCcEEEEEEEEEecCCEE-------------EEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCC
Confidence 11 122334489999999988876432 46666664 699999999999999999999975422
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcC
Q 010331 216 FPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 283 (513)
Q Consensus 216 ~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~ 283 (513)
.+.+.++...+... -++..+ ..+...+ .|+++++.+.+++..++.+.+.+.+.|+++||+++++
T Consensus 144 -~v~~~~~~~~~~~~---~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~ 219 (441)
T PRK08010 144 -GVYDSTGLLNLKEL---PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILN 219 (441)
T ss_pred -CEEChhHhhccccc---CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeC
Confidence 12222232221110 111111 3444444 5999999999999888888999999999999999999
Q ss_pred ceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCC
Q 010331 284 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 363 (513)
Q Consensus 284 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~ 363 (513)
+.+.+++.++ +.+.++. ++.++++|.|++|+|.+||++++... ..++
T Consensus 220 ~~v~~i~~~~-----------------------~~v~v~~-------~~g~i~~D~vl~a~G~~pn~~~l~~~---~~gl 266 (441)
T PRK08010 220 AHVERISHHE-----------------------NQVQVHS-------EHAQLAVDALLIASGRQPATASLHPE---NAGI 266 (441)
T ss_pred CEEEEEEEcC-----------------------CEEEEEE-------cCCeEEeCEEEEeecCCcCCCCcCch---hcCc
Confidence 9999997643 3344442 22358999999999999998775422 3467
Q ss_pred ccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 364 PLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 364 ~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
+++++|+|.||+++|+ +.|||||+|||+.. ++.++.|..||++++.||..
T Consensus 267 ~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 267 AVNERGAIVVDKYLHT-TADNIWAMGDVTGG--------LQFTYISLDDYRIVRDELLG 316 (441)
T ss_pred EECCCCcEEECCCccc-CCCCEEEeeecCCC--------ccchhHHHHHHHHHHHHHcC
Confidence 8888999999999999 89999999999986 68889999999999999864
No 16
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.98 E-value=1.1e-30 Score=274.14 Aligned_cols=281 Identities=19% Similarity=0.243 Sum_probs=197.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccC-------C---chhh---------hhhccc-----
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-------P---MLYE---------LLSGEV----- 134 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~-------p---~~~~---------~~~g~~----- 134 (513)
++|||||||||||++||..|++. +.+|+|||+++.+..+ | ++.. .....+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~------G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADL------GLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEP 77 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCC
Confidence 58999999999999999999995 4599999987533211 1 1110 000001
Q ss_pred --cCCcchH-----------hHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCc--eEEEecEEEEeC
Q 010331 135 --DAWEIAP-----------RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSL 199 (513)
Q Consensus 135 --~~~~~~~-----------~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g--~~i~yD~LVlAt 199 (513)
+...+.. .+..+++..+|+++++++..++...- .|..++| .+++||+|||||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v-------------~v~~~~g~~~~~~~d~lViAT 144 (471)
T PRK06467 78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTL-------------EVTGEDGKTTVIEFDNAIIAA 144 (471)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEE-------------EEecCCCceEEEEcCEEEEeC
Confidence 1111111 12234566799999998887754321 3444455 479999999999
Q ss_pred CCCCC-CCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHH
Q 010331 200 GAEPK-LDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNR 266 (513)
Q Consensus 200 Gs~~~-~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~ 266 (513)
|++|. .|.+|+..++ +.+.+++..+.... ++..+ ..+...+ .|+++++.+.+++.+++.+.
T Consensus 145 Gs~p~~~p~~~~~~~~---v~~~~~~~~~~~~~---~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~ 218 (471)
T PRK06467 145 GSRPIQLPFIPHDDPR---IWDSTDALELKEVP---KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIV 218 (471)
T ss_pred CCCCCCCCCCCCCCCc---EEChHHhhccccCC---CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHH
Confidence 99996 4555653332 23444544433211 11111 3444444 59999999999999999999
Q ss_pred HHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCC
Q 010331 267 EAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS 346 (513)
Q Consensus 267 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~ 346 (513)
+.+++.|+++ |++++++.+.+++..+ +.+.+++.. ..++.+++++|.||+++|.
T Consensus 219 ~~~~~~l~~~-v~i~~~~~v~~i~~~~-----------------------~~~~v~~~~--~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 219 KVFTKRIKKQ-FNIMLETKVTAVEAKE-----------------------DGIYVTMEG--KKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred HHHHHHHhhc-eEEEcCCEEEEEEEcC-----------------------CEEEEEEEe--CCCcceEEEeCEEEEeecc
Confidence 9999999988 9999999999987543 334444321 1112467999999999999
Q ss_pred CCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 347 KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 347 ~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
+||++++... ..+++++++|+|.||+++|+ +.|+|||+|||+.. |+++..|.+||+++|.||..
T Consensus 273 ~pn~~~l~~~---~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~--------~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 273 VPNGKLLDAE---KAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQ--------PMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred cccCCccChh---hcCceECCCCcEeeCCCccc-CCCCEEEehhhcCC--------cccHHHHHHHHHHHHHHHcC
Confidence 9998865432 34788899999999999998 99999999999875 67999999999999999975
No 17
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.98 E-value=3.5e-30 Score=268.79 Aligned_cols=275 Identities=19% Similarity=0.251 Sum_probs=195.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC----ccc--CC---chhhh-----h-----hc-------
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER----FVF--KP---MLYEL-----L-----SG------- 132 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~----~~~--~p---~~~~~-----~-----~g------- 132 (513)
++||+||||||||++||..+++.| .+|+|||+... ... .| +++.. . .|
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G------~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 75 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHG------AKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLEN 75 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC------CcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcC
Confidence 489999999999999999999954 49999998641 100 01 11000 0 00
Q ss_pred cccCC-----------cchHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCC
Q 010331 133 EVDAW-----------EIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201 (513)
Q Consensus 133 ~~~~~-----------~~~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs 201 (513)
..+.. .+...+...+++.+++++.++....+ ++ +|.. ++..++||+||||||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~-------------~v~v-~~~~~~~d~vIiAtGs 139 (450)
T TIGR01421 76 TFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTK--DG-------------TVEV-NGRDYTAPHILIATGG 139 (450)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CC-------------EEEE-CCEEEEeCEEEEecCC
Confidence 00100 11122445566679999998775443 22 3444 4557999999999999
Q ss_pred CCCCC-CCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHH
Q 010331 202 EPKLD-VVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREA 268 (513)
Q Consensus 202 ~~~~~-~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~ 268 (513)
+|+.| ++||.+ +. .+.++...+... -++..+ ..+...+ .|+++++.+.+++.+++.+.+.
T Consensus 140 ~p~~p~~i~g~~-~~---~~~~~~~~~~~~---~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~ 212 (450)
T TIGR01421 140 KPSFPENIPGAE-LG---TDSDGFFALEEL---PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISET 212 (450)
T ss_pred CCCCCCCCCCCc-ee---EcHHHhhCcccc---CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHH
Confidence 99888 899853 21 122232222111 011111 3444443 5999999999999999999999
Q ss_pred HHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcc-eEEeeceEEEecCCC
Q 010331 269 ALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES-QIFEADLVLWTVGSK 347 (513)
Q Consensus 269 ~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g-~~i~aD~vi~a~G~~ 347 (513)
+++.|+++||++++++.++++..+.. +.+.+.+. ++ +++++|.|||++|.+
T Consensus 213 ~~~~l~~~gI~i~~~~~v~~i~~~~~----------------------~~~~v~~~------~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 213 ITEEYEKEGINVHKLSKPVKVEKTVE----------------------GKLVIHFE------DGKSIDDVDELIWAIGRK 264 (450)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEEeCC----------------------ceEEEEEC------CCcEEEEcCEEEEeeCCC
Confidence 99999999999999999999976431 22334432 44 579999999999999
Q ss_pred CCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 348 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 348 p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
||++.+... ..+++++++|+|.||+++|+ +.|+|||+|||+.. +..+..|.+||+.+|+||..
T Consensus 265 pn~~~l~l~---~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~--------~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 265 PNTKGLGLE---NVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGK--------VELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred cCcccCCcc---ccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCC--------cccHHHHHHHHHHHHHHHhc
Confidence 998865322 34788899999999999998 89999999999975 66889999999999999974
No 18
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.97 E-value=1.6e-30 Score=273.18 Aligned_cols=278 Identities=24% Similarity=0.352 Sum_probs=198.0
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccC-------C---chh-----hhhh----c------cc
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-------P---MLY-----ELLS----G------EV 134 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~-------p---~~~-----~~~~----g------~~ 134 (513)
+|||||||||||++||..++++ +.+|+|||+.+ +..+ | ++. .... | ..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~------g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~ 73 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL------GASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAV 73 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCcc
Confidence 5899999999999999999995 45999999865 1111 1 000 0000 0 00
Q ss_pred cC-------CcchH-----hHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCc-eEEEecEEEEeCCC
Q 010331 135 DA-------WEIAP-----RFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGA 201 (513)
Q Consensus 135 ~~-------~~~~~-----~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g-~~i~yD~LVlAtGs 201 (513)
+. +++.. .+.+++++.+++++.+++..++. + +|.++++ ..+.||+||||||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~--~-------------~v~v~~g~~~~~~~~lIiATGs 138 (463)
T TIGR02053 74 DFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDP--K-------------TVKVDLGREVRGAKRFLIATGA 138 (463)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccC--C-------------EEEEcCCeEEEEeCEEEEcCCC
Confidence 00 01111 13455677899999998876642 2 3555554 36899999999999
Q ss_pred CCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHHH
Q 010331 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREAA 269 (513)
Q Consensus 202 ~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~~ 269 (513)
+|+.|++||.++. .+.+.+++..+.... ++..+ ..+...+ .|+++++.+.+++..++.+.+.+
T Consensus 139 ~p~~p~i~G~~~~--~~~~~~~~~~~~~~~---~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l 213 (463)
T TIGR02053 139 RPAIPPIPGLKEA--GYLTSEEALALDRIP---ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAV 213 (463)
T ss_pred CCCCCCCCCcccC--ceECchhhhCcccCC---CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHH
Confidence 9999999997543 223333433221110 11111 3444443 59999999999999999999999
Q ss_pred HHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCC
Q 010331 270 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 349 (513)
Q Consensus 270 ~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~ 349 (513)
++.|++.||++++++.+.++..++ +.+.+.+. ..++++++++|.||+|+|.+||
T Consensus 214 ~~~l~~~gV~i~~~~~V~~i~~~~-----------------------~~~~v~~~---~~~~~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 214 EEALAEEGIEVVTSAQVKAVSVRG-----------------------GGKIITVE---KPGGQGEVEADELLVATGRRPN 267 (463)
T ss_pred HHHHHHcCCEEEcCcEEEEEEEcC-----------------------CEEEEEEE---eCCCceEEEeCEEEEeECCCcC
Confidence 999999999999999999997643 22333332 1113468999999999999999
Q ss_pred CCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 350 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
++.+... ..+++++++|+|.||+++|+ +.|+|||+|||+.. ++++..|..||+++|.||..
T Consensus 268 ~~~l~l~---~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~--------~~~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 268 TDGLGLE---KAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGG--------LQLEYVAAKEGVVAAENALG 328 (463)
T ss_pred CCCCCcc---ccCCEECCCCcEeECCCccC-CCCCEEEeeecCCC--------cccHhHHHHHHHHHHHHhcC
Confidence 8744211 34677888999999999998 89999999999985 67899999999999999975
No 19
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.97 E-value=5.7e-31 Score=269.45 Aligned_cols=283 Identities=23% Similarity=0.334 Sum_probs=204.0
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC----------CcccCCchhhhhh-----------c----
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE----------RFVFKPMLYELLS-----------G---- 132 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~----------~~~~~p~~~~~~~-----------g---- 132 (513)
+.+|+||||+|+||..||.+++++|. ++.|||+.. |.+.+.+++.... |
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~------kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~ 76 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGL------KVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAE 76 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC------CEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecC
Confidence 46899999999999999999999754 599999984 2222222221100 0
Q ss_pred --cccCCc-----------chHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCC--ceEEEecEEEE
Q 010331 133 --EVDAWE-----------IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLES--GLIVEYDWLVL 197 (513)
Q Consensus 133 --~~~~~~-----------~~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~--g~~i~yD~LVl 197 (513)
..+..+ +......+++..+|+++.++..-+++. +|...+ .+++++|++||
T Consensus 77 ~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~---------------~v~V~~~~~~~~~a~~iiI 141 (454)
T COG1249 77 VPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPH---------------TVEVTGEDKETITADNIII 141 (454)
T ss_pred CCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCC---------------EEEEcCCCceEEEeCEEEE
Confidence 011111 122234456667999999988877632 244433 47899999999
Q ss_pred eCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHH---HHhhhH-----HHHHhcC-cEEEEeccCeecCCCChhHHHH
Q 010331 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE---LERRNF-----ERLEEKG-IVQAINVETTICPTGTPGNREA 268 (513)
Q Consensus 198 AtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~---~~~~~v-----~~l~~~~-~vtli~~~~~ll~~~~~~~~~~ 268 (513)
|||++|..|++||+.+.. +.+.+++..+....+. .....+ ..+...| .||++++.+++||.+++++++.
T Consensus 142 ATGS~p~~~~~~~~~~~~--~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~ 219 (454)
T COG1249 142 ATGSRPRIPPGPGIDGAR--ILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKE 219 (454)
T ss_pred cCCCCCcCCCCCCCCCCe--EEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHH
Confidence 999999999888875432 2222233222211110 011111 3334444 4999999999999999999999
Q ss_pred HHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCC
Q 010331 269 ALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 348 (513)
Q Consensus 269 ~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p 348 (513)
+.+.|++.|+++++++.+.+++..+ +++.+.++ .+ ++.++++|.+++|+|.+|
T Consensus 220 ~~~~l~~~gv~i~~~~~v~~~~~~~-----------------------~~v~v~~~---~g-~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 220 LTKQLEKGGVKILLNTKVTAVEKKD-----------------------DGVLVTLE---DG-EGGTIEADAVLVAIGRKP 272 (454)
T ss_pred HHHHHHhCCeEEEccceEEEEEecC-----------------------CeEEEEEe---cC-CCCEEEeeEEEEccCCcc
Confidence 9999999999999999999998755 33555554 11 222799999999999999
Q ss_pred CCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 349 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
|++-+... ..|+++|++|+|+||.++++ +.|+|||+|||+.. |.+++.|..||+++|.||.+
T Consensus 273 n~~~LgLe---~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~--------~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 273 NTDGLGLE---NAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGG--------PMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred CCCCCChh---hcCceECCCCCEEeCCcccc-CCCCEEEeeccCCC--------cccHhHHHHHHHHHHHHHhC
Confidence 99865543 45899999999999965555 89999999999887 66999999999999999997
No 20
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.97 E-value=7.7e-31 Score=259.18 Aligned_cols=305 Identities=21% Similarity=0.274 Sum_probs=238.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCC-chhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-MLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p-~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
.+.+||||||++|..|+..+++.+ ...+++|+-+..+++|-+ .++.... ...+.+.....++++.++++++.+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g----~~~ri~l~~~~~~~pydr~~Ls~~~~--~~~~~~a~r~~e~Yke~gIe~~~~ 147 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVG----FTERIALVKREYLLPYDRARLSKFLL--TVGEGLAKRTPEFYKEKGIELILG 147 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhC----CCcceEEEeccccCcccchhccccee--eccccccccChhhHhhcCceEEEc
Confidence 478999999999999999999865 456899998888887754 3443322 122345555667888999999986
Q ss_pred -eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCc-cccCCCCCCHHHHHHHHHHHHHHH
Q 010331 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGA-AEFAFPFSTLEDACRVDRKLSELE 235 (513)
Q Consensus 158 -~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~-~~~~~~~~~~~~a~~l~~~l~~~~ 235 (513)
.|+.+|...+ +|.+.+|+.++|++|+||||+.++.+++||. .++..+++.++++..+...+....
T Consensus 148 t~v~~~D~~~K-------------~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~ 214 (478)
T KOG1336|consen 148 TSVVKADLASK-------------TLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGG 214 (478)
T ss_pred ceeEEeecccc-------------EEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCc
Confidence 9999998887 5999999999999999999999999999997 467778899999887766654422
Q ss_pred hhhH-----------HHHHhcC-cEEEEeccCeecCC-CChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCC
Q 010331 236 RRNF-----------ERLEEKG-IVQAINVETTICPT-GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQP 302 (513)
Q Consensus 236 ~~~v-----------~~l~~~~-~vtli~~~~~ll~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~ 302 (513)
.+++ ..+...+ .||+++..+.++++ +.+.+++.+++++++.||++++++.+.+++.....
T Consensus 215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~G------- 287 (478)
T KOG1336|consen 215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDG------- 287 (478)
T ss_pred eEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCC-------
Confidence 2221 4444443 49999999998884 57888999999999999999999999999886532
Q ss_pred CcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCC
Q 010331 303 ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGH 382 (513)
Q Consensus 303 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~ 382 (513)
+...+.+. ++++++||+||.++|.+||+++++. +..++++|.|+||+.+|+ ++
T Consensus 288 --------------ev~~V~l~------dg~~l~adlvv~GiG~~p~t~~~~~------g~~~~~~G~i~V~~~f~t-~~ 340 (478)
T KOG1336|consen 288 --------------EVSEVKLK------DGKTLEADLVVVGIGIKPNTSFLEK------GILLDSKGGIKVDEFFQT-SV 340 (478)
T ss_pred --------------cEEEEEec------cCCEeccCeEEEeeccccccccccc------cceecccCCEeehhceee-cc
Confidence 23345443 8999999999999999999999874 466889999999999999 79
Q ss_pred CCEEEEcccccccCCC--CCCCCCchHHHHHHHHHHHHHHHHHHCCC-CCCCcccCC
Q 010331 383 PRIFALGDSSALRDSS--GRPLPATAQVAFQQADFAGWNLWAAINDR-PLLPFRFQN 436 (513)
Q Consensus 383 p~VfaiGD~a~~~~~~--g~~~~~~a~~A~~qg~~~a~ni~~~l~~~-~~~~f~~~~ 436 (513)
|||||+|||++++-+. .......++.|..+|+.+...|...-... ...||.|+.
T Consensus 341 ~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~~~~lPyf~t~ 397 (478)
T KOG1336|consen 341 PNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDAYDYLPYFYTR 397 (478)
T ss_pred CCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCcccccccchHHHH
Confidence 9999999999987652 11115678888889988777766543332 346777654
No 21
>PLN02546 glutathione reductase
Probab=99.97 E-value=4.5e-30 Score=271.82 Aligned_cols=275 Identities=17% Similarity=0.231 Sum_probs=198.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC----------C---------CcccCCchh-----hhh----
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS----------E---------RFVFKPMLY-----ELL---- 130 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~----------~---------~~~~~p~~~-----~~~---- 130 (513)
.+||||||||+||+.||..++++| .+|+|||+. . |.+.+.+++ ..+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G------~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~ 152 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFG------ASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESR 152 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC------CeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhh
Confidence 589999999999999999999954 499999951 1 111111111 000
Q ss_pred -hcc-------cc-----------CCcchHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEE
Q 010331 131 -SGE-------VD-----------AWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVE 191 (513)
Q Consensus 131 -~g~-------~~-----------~~~~~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~ 191 (513)
.|. .+ ...+...+.+.+++.++++++++++.+++. +|.. +|+++.
T Consensus 153 ~~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~---------------~V~v-~G~~~~ 216 (558)
T PLN02546 153 GFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH---------------TVDV-DGKLYT 216 (558)
T ss_pred hcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC---------------EEEE-CCEEEE
Confidence 010 00 011233455566778999999999988764 2444 466899
Q ss_pred ecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecC
Q 010331 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICP 259 (513)
Q Consensus 192 yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~ 259 (513)
||+||||||+++..|++||.+ ++ .+.+++..+... .++..+ ..+...+ .|+++++.+.+++
T Consensus 217 ~D~LVIATGs~p~~P~IpG~~-~v---~~~~~~l~~~~~---~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~ 289 (558)
T PLN02546 217 ARNILIAVGGRPFIPDIPGIE-HA---IDSDAALDLPSK---PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR 289 (558)
T ss_pred CCEEEEeCCCCCCCCCCCChh-hc---cCHHHHHhcccc---CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence 999999999999999999963 22 233343322211 111111 3344433 5999999999999
Q ss_pred CCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeece
Q 010331 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 339 (513)
Q Consensus 260 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~ 339 (513)
.+++.+++.+++.|+++||++++++.+.++...++ +.+.+++. +++.+.+|.
T Consensus 290 ~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~----------------------g~v~v~~~------~g~~~~~D~ 341 (558)
T PLN02546 290 GFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD----------------------GSLSLKTN------KGTVEGFSH 341 (558)
T ss_pred ccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC----------------------CEEEEEEC------CeEEEecCE
Confidence 99999999999999999999999999999975321 22334321 445556899
Q ss_pred EEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHH
Q 010331 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419 (513)
Q Consensus 340 vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~n 419 (513)
|||++|.+||++++... ..+++++++|+|.||+++|+ +.|+|||+|||+.. +.++..|..||+++|.|
T Consensus 342 Viva~G~~Pnt~~L~le---~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~--------~~l~~~A~~~g~~~a~~ 409 (558)
T PLN02546 342 VMFATGRKPNTKNLGLE---EVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDR--------INLTPVALMEGGALAKT 409 (558)
T ss_pred EEEeeccccCCCcCChh---hcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCC--------cccHHHHHHHHHHHHHH
Confidence 99999999998865321 34788888999999999998 89999999999976 67888999999999999
Q ss_pred HHH
Q 010331 420 LWA 422 (513)
Q Consensus 420 i~~ 422 (513)
|..
T Consensus 410 i~g 412 (558)
T PLN02546 410 LFG 412 (558)
T ss_pred HcC
Confidence 975
No 22
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.97 E-value=1.7e-30 Score=273.03 Aligned_cols=279 Identities=16% Similarity=0.169 Sum_probs=199.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCC----chhh--------hhh---------c-----
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP----MLYE--------LLS---------G----- 132 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p----~~~~--------~~~---------g----- 132 (513)
++||+|||||+||++||..|++. +.+|+|||+++.+..+- ..+. ... +
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~------G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~ 78 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL------GKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKL 78 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC------CCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcC
Confidence 48999999999999999999995 45999999965321110 0000 000 0
Q ss_pred cccCCcch-----------HhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCce--EEEecEEEEeC
Q 010331 133 EVDAWEIA-----------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL--IVEYDWLVLSL 199 (513)
Q Consensus 133 ~~~~~~~~-----------~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~--~i~yD~LVlAt 199 (513)
..+..++. ..+.+++++.+++++.+++..++.... .|...+|. +++||+|||||
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-------------~v~~~~g~~~~~~~d~lviAT 145 (461)
T PRK05249 79 RITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTV-------------EVECPDGEVETLTADKIVIAT 145 (461)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEE-------------EEEeCCCceEEEEcCEEEEcC
Confidence 00011111 123345567799999999888865432 35555553 79999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHH
Q 010331 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNRE 267 (513)
Q Consensus 200 Gs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~ 267 (513)
|++|..|++++... ..+.+.++...+... -++..+ ..+...+ .|+++++.+.+++.+++.+.+
T Consensus 146 Gs~p~~p~~~~~~~--~~v~~~~~~~~~~~~---~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~ 220 (461)
T PRK05249 146 GSRPYRPPDVDFDH--PRIYDSDSILSLDHL---PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISD 220 (461)
T ss_pred CCCCCCCCCCCCCC--CeEEcHHHhhchhhc---CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHH
Confidence 99998887766422 112233333222111 111111 3444444 599999999999999999999
Q ss_pred HHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCC
Q 010331 268 AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 347 (513)
Q Consensus 268 ~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~ 347 (513)
.+.+.|++.||++++++.+.++...+ +.+.+++. +++++++|.||+|+|.+
T Consensus 221 ~l~~~l~~~gI~v~~~~~v~~i~~~~-----------------------~~~~v~~~------~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 221 ALSYHLRDSGVTIRHNEEVEKVEGGD-----------------------DGVIVHLK------SGKKIKADCLLYANGRT 271 (461)
T ss_pred HHHHHHHHcCCEEEECCEEEEEEEeC-----------------------CeEEEEEC------CCCEEEeCEEEEeecCC
Confidence 99999999999999999999997643 33444432 56689999999999999
Q ss_pred CCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 348 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 348 p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
||++.+... ..+++++++|+|.||+++|+ +.|+|||+|||+.. ++++..|.+||+++|.||.+
T Consensus 272 p~~~~l~l~---~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~--------~~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 272 GNTDGLNLE---NAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGF--------PSLASASMDQGRIAAQHAVG 334 (461)
T ss_pred ccccCCCch---hhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCC--------cccHhHHHHHHHHHHHHHcC
Confidence 998765322 34678888999999999998 89999999999975 67899999999999999974
No 23
>PRK06370 mercuric reductase; Validated
Probab=99.97 E-value=3.1e-30 Score=270.97 Aligned_cols=278 Identities=21% Similarity=0.253 Sum_probs=195.7
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC----CcccCCchhh----------------hhhc------
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE----RFVFKPMLYE----------------LLSG------ 132 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~----~~~~~p~~~~----------------~~~g------ 132 (513)
++|||||||||||++||.+|++. +.+|+|||+.. +... ...|. ...|
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~------G~~v~lie~~~~GG~c~~~-gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGL------GMKVALIERGLLGGTCVNT-GCVPTKTLIASARAAHLARRAAEYGVSVGGP 77 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhC------CCeEEEEecCccCCceecc-ccCcHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 48999999999999999999995 45999999864 1111 10000 0001
Q ss_pred -cccCCcch-----------HhHHHHhcCC-CeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeC
Q 010331 133 -EVDAWEIA-----------PRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199 (513)
Q Consensus 133 -~~~~~~~~-----------~~~~~~~~~~-~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAt 199 (513)
..+...+. ..+..++++. +++++.++...++ .+ +|.. ++.++.||+|||||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~--~~-------------~v~v-~~~~~~~d~lViAT 141 (463)
T PRK06370 78 VSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFES--PN-------------TVRV-GGETLRAKRIFINT 141 (463)
T ss_pred CccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEcc--CC-------------EEEE-CcEEEEeCEEEEcC
Confidence 01111111 2234556665 9999998766543 22 3555 34579999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHH
Q 010331 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNRE 267 (513)
Q Consensus 200 Gs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~ 267 (513)
|++|+.|++||..+.. +.+.++....... -++..+ ..+...+ .|+++++.+.+++..++.+.+
T Consensus 142 Gs~p~~p~i~G~~~~~--~~~~~~~~~~~~~---~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~ 216 (463)
T PRK06370 142 GARAAIPPIPGLDEVG--YLTNETIFSLDEL---PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAA 216 (463)
T ss_pred CCCCCCCCCCCCCcCc--eEcchHhhCcccc---CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHH
Confidence 9999999999975421 2222333221110 011111 3444444 599999999999988888999
Q ss_pred HHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCC
Q 010331 268 AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 347 (513)
Q Consensus 268 ~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~ 347 (513)
.+.+.|++.||++++++.+.+++..+ +.+.+.+. ..+++.++++|.||+|+|.+
T Consensus 217 ~l~~~l~~~GV~i~~~~~V~~i~~~~-----------------------~~~~v~~~---~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 217 AVREILEREGIDVRLNAECIRVERDG-----------------------DGIAVGLD---CNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEcC-----------------------CEEEEEEE---eCCCceEEEeCEEEECcCCC
Confidence 99999999999999999999997643 22233321 11145689999999999999
Q ss_pred CCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 348 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 348 p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
||++.+... ..+++++++|+|.||+++|+ +.|+|||+|||+.. ++++..|..||+++|+||..
T Consensus 271 pn~~~l~l~---~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~--------~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 271 PNTDDLGLE---AAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGR--------GAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred cCCCCcCch---hhCceECCCCcEeECcCCcC-CCCCEEEeeecCCC--------cccHHHHHHHHHHHHHHHhC
Confidence 998744211 34678889999999999998 89999999999875 67889999999999999975
No 24
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.97 E-value=6.1e-31 Score=260.92 Aligned_cols=273 Identities=18% Similarity=0.190 Sum_probs=191.1
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC---ccc------CCchhhhhhccccCCcchHhHHHHhcCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER---FVF------KPMLYELLSGEVDAWEIAPRFADLLANT 150 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~---~~~------~p~~~~~~~g~~~~~~~~~~~~~~~~~~ 150 (513)
+||||||||+||++||..|++. +.+|+|||+++. +.. .|.++. .....++...+.+.++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~~gg~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 70 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA------NLKTLIIEGMEPGGQLTTTTEVENYPGFPE----GISGPELMEKMKEQAVKF 70 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEeccCCCcceeecccccccCCCCC----CCChHHHHHHHHHHHHHc
Confidence 4899999999999999999984 459999998762 111 111111 122235667788888888
Q ss_pred CeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCccccC----CCCCCHHHHHH
Q 010331 151 GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFA----FPFSTLEDACR 226 (513)
Q Consensus 151 ~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~----~~~~~~~~a~~ 226 (513)
+++++..+|++++++++. +.+.++++.++.||+||+|||+.++.+.+||..++. +.+...+.
T Consensus 71 gv~~~~~~v~~v~~~~~~-----------~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~--- 136 (300)
T TIGR01292 71 GAEIIYEEVIKVDLSDRP-----------FKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDG--- 136 (300)
T ss_pred CCeEEEEEEEEEEecCCe-----------eEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecCh---
Confidence 999998999999876541 246666777899999999999999988899864321 11111111
Q ss_pred HHHHHHHHHhhhH-----------HHHHhc-CcEEEEeccCeecCCCChhHHHHHHHHHHhC-CcEEEcCceeeEEeccc
Q 010331 227 VDRKLSELERRNF-----------ERLEEK-GIVQAINVETTICPTGTPGNREAALKVLSAR-KVQLVLGYFVRCIRRVG 293 (513)
Q Consensus 227 l~~~l~~~~~~~v-----------~~l~~~-~~vtli~~~~~ll~~~~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~ 293 (513)
.....++..+ ..+... ..|+++.+.+.+. ....+.+.++++ ||++++++.+.++..++
T Consensus 137 ---~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~ 207 (300)
T TIGR01292 137 ---PFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR------AEKILLDRLRKNPNIEFLWNSTVKEIVGDN 207 (300)
T ss_pred ---hhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC------cCHHHHHHHHhCCCeEEEeccEEEEEEccC
Confidence 0000011111 333333 3588888876542 134456677777 99999999999997643
Q ss_pred cccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEe
Q 010331 294 EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAET 373 (513)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~V 373 (513)
. ...+++.....+ +++++++|.+|||+|++|+++++... +.++++|++.|
T Consensus 208 ~-----------------------~~~v~~~~~~~g-~~~~i~~D~vi~a~G~~~~~~~l~~~------~~~~~~g~i~v 257 (300)
T TIGR01292 208 K-----------------------VEGVKIKNTVTG-EEEELKVDGVFIAIGHEPNTELLKGL------LELDEGGYIVT 257 (300)
T ss_pred c-----------------------EEEEEEEecCCC-ceEEEEccEEEEeeCCCCChHHHHHh------heecCCCcEEE
Confidence 1 111222211112 46789999999999999998777642 45678899999
Q ss_pred CCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010331 374 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423 (513)
Q Consensus 374 d~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~ 423 (513)
|+++++ ++||||++|||+.. .++++..|+.||+.+|.||.+.
T Consensus 258 ~~~~~t-~~~~vya~GD~~~~-------~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 258 DEGMRT-SVPGVFAAGDVRDK-------GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred CCCCcc-CCCCEEEeecccCc-------chhhhhhhhhhHHHHHHHHHhh
Confidence 999998 99999999999984 1678899999999999999864
No 25
>PRK14694 putative mercuric reductase; Provisional
Probab=99.97 E-value=4.3e-30 Score=269.94 Aligned_cols=278 Identities=22% Similarity=0.297 Sum_probs=196.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC----c-----ccCCchh-----hhh------hcc---
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER----F-----VFKPMLY-----ELL------SGE--- 133 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~----~-----~~~p~~~-----~~~------~g~--- 133 (513)
..+++|+|||||+||++||..|++. +.+|+|||++.. . +.+.++. ... .|.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~------g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~ 77 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATER------GARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQ 77 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC------CCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccC
Confidence 4568999999999999999999995 449999998641 0 0000000 000 010
Q ss_pred ---ccCCcchHh------------HHHHhcC-CCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCc--eEEEecEE
Q 010331 134 ---VDAWEIAPR------------FADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWL 195 (513)
Q Consensus 134 ---~~~~~~~~~------------~~~~~~~-~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g--~~i~yD~L 195 (513)
.+..++... ++..++. .+++++.++++.+|++.. .|.+.+| .+++||+|
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~-------------~V~~~~g~~~~~~~d~l 144 (468)
T PRK14694 78 APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTL-------------TVTLNDGGEQTVHFDRA 144 (468)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEE-------------EEEecCCCeEEEECCEE
Confidence 000111111 2223433 389999999999987654 4666666 47999999
Q ss_pred EEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCCh
Q 010331 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTP 263 (513)
Q Consensus 196 VlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~ 263 (513)
|||||++|+.|++||+++.. +.+.+++..+... -++..+ ..+...+ .|++++. ..+++..++
T Consensus 145 ViATGs~p~~p~i~G~~~~~--~~~~~~~~~l~~~---~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~~~~ 218 (468)
T PRK14694 145 FIGTGARPAEPPVPGLAETP--YLTSTSALELDHI---PERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQEDP 218 (468)
T ss_pred EEeCCCCCCCCCCCCCCCCc--eEcchhhhchhcC---CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCCCCH
Confidence 99999999999999975532 2233344333211 011111 3444444 4899976 578888888
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEe
Q 010331 264 GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 343 (513)
Q Consensus 264 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a 343 (513)
.+.+.+++.|++.||++++++.+.+++.++ +.+.+.+ ++.++++|.||+|
T Consensus 219 ~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~-----------------------~~~~v~~-------~~~~i~~D~vi~a 268 (468)
T PRK14694 219 AVGEAIEAAFRREGIEVLKQTQASEVDYNG-----------------------REFILET-------NAGTLRAEQLLVA 268 (468)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-----------------------CEEEEEE-------CCCEEEeCEEEEc
Confidence 999999999999999999999999987643 2333432 2336999999999
Q ss_pred cCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 344 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 344 ~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
+|.+||++++... ..+++. ++|+|.||+++|+ +.|+|||+|||+.. +..+..|..||+++|.||..
T Consensus 269 ~G~~pn~~~l~l~---~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 269 TGRTPNTENLNLE---SIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQ--------PQFVYVAAAGGSRAAINMTG 334 (468)
T ss_pred cCCCCCcCCCCch---hcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCC--------cccHHHHHHHHHHHHHHhcC
Confidence 9999998876422 235664 5799999999998 89999999999986 67888999999999999964
No 26
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.97 E-value=2e-30 Score=271.96 Aligned_cols=279 Identities=22% Similarity=0.291 Sum_probs=196.5
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC---------CcccCCchhhh----------hhccc------
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE---------RFVFKPMLYEL----------LSGEV------ 134 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~---------~~~~~p~~~~~----------~~g~~------ 134 (513)
++|||||||+||+.||..++++ +.+|+|||++. +.+.+.++... ..|..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~------g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 75 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQL------GADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGE 75 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcc
Confidence 5899999999999999999985 45999999875 11111111110 00100
Q ss_pred ---cCCc-----------chHhHHHHhcCCCeEEEEEeEEEEe--CCCCcCcCCCceeeccceEecCCce--EEEecEEE
Q 010331 135 ---DAWE-----------IAPRFADLLANTGVQFFKDRVKLLC--PSDHLGVNGPMACTHGGTVLLESGL--IVEYDWLV 196 (513)
Q Consensus 135 ---~~~~-----------~~~~~~~~~~~~~v~~~~~~V~~id--~~~~~~~~~~~v~~~~~~v~~~~g~--~i~yD~LV 196 (513)
+... +...+++.+++++++++++++..++ .+.+ . ..|.+++|. ++.||+||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~------~-----v~V~~~~g~~~~~~~d~lV 144 (466)
T PRK07845 76 ARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPH------R-----VKVTTADGGEETLDADVVL 144 (466)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCC------E-----EEEEeCCCceEEEecCEEE
Confidence 0001 1123445566789999999988854 2222 1 135555664 79999999
Q ss_pred EeCCCCCCCCCCCCcc-ccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCCh
Q 010331 197 LSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTP 263 (513)
Q Consensus 197 lAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~ 263 (513)
||||++|+.++.++.. ++.+.. .+...+.. +. ++..+ ..|...+ .|+++++.+.+++..++
T Consensus 145 iATGs~p~~~p~~~~~~~~v~~~---~~~~~~~~-~~--~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~ 218 (466)
T PRK07845 145 IATGASPRILPTAEPDGERILTW---RQLYDLDE-LP--EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDA 218 (466)
T ss_pred EcCCCCCCCCCCCCCCCceEEee---hhhhcccc-cC--CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCH
Confidence 9999999765544321 222222 22221111 00 11111 3444444 59999999999999999
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEe
Q 010331 264 GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 343 (513)
Q Consensus 264 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a 343 (513)
...+.+.+.|+++||++++++.+.+++.++ +++.+.+. +++++++|.||++
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-----------------------~~~~v~~~------~g~~l~~D~vl~a 269 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERTG-----------------------DGVVVTLT------DGRTVEGSHALMA 269 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEeC-----------------------CEEEEEEC------CCcEEEecEEEEe
Confidence 999999999999999999999999997543 33445442 5678999999999
Q ss_pred cCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 344 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 344 ~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
+|.+||++.+... ..+++++++|+|.||+++|+ +.|||||+|||+.. ++++..|..||.+++.||..
T Consensus 270 ~G~~pn~~~l~l~---~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~--------~~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 270 VGSVPNTAGLGLE---EAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGV--------LPLASVAAMQGRIAMYHALG 336 (466)
T ss_pred ecCCcCCCCCCch---hhCceECCCCcEeECCCccc-CCCCEEEEeeccCC--------ccchhHHHHHHHHHHHHHcC
Confidence 9999998764321 34788888999999999998 99999999999986 68899999999999999974
No 27
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=8.5e-30 Score=267.24 Aligned_cols=284 Identities=21% Similarity=0.254 Sum_probs=191.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccC----------Cchh-----hhhhc------cc---
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK----------PMLY-----ELLSG------EV--- 134 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~----------p~~~-----~~~~g------~~--- 134 (513)
++||+||||||||++||.++++. +.+|+|||++..+..+ .++. +...+ ..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~------G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~ 76 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL------GLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVK 76 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCcccc
Confidence 37999999999999999999995 4599999974322111 1111 00010 00
Q ss_pred ---cCCcc-----------hHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCc--eEEEecEEEEe
Q 010331 135 ---DAWEI-----------APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLS 198 (513)
Q Consensus 135 ---~~~~~-----------~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g--~~i~yD~LVlA 198 (513)
+..++ ...+..+++..++++++++. .++.+.++ .|.+++| .+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~~~~v------------~v~~~~g~~~~~~~d~lVIA 143 (466)
T PRK06115 77 PTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLDGVGKV------------VVKAEDGSETQLEAKDIVIA 143 (466)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEccCCEE------------EEEcCCCceEEEEeCEEEEe
Confidence 00000 11223345556899999875 33333321 3445555 36999999999
Q ss_pred CCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHH
Q 010331 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNR 266 (513)
Q Consensus 199 tGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~ 266 (513)
||++|. .+||.......+.+.+++..+... -++..+ ..+...+ +|+++++.+++++.+++...
T Consensus 144 TGs~p~--~ipg~~~~~~~~~~~~~~~~~~~~---~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~ 218 (466)
T PRK06115 144 TGSEPT--PLPGVTIDNQRIIDSTGALSLPEV---PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETA 218 (466)
T ss_pred CCCCCC--CCCCCCCCCCeEECHHHHhCCccC---CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHH
Confidence 999874 467753211112233333322110 011111 3334443 59999999999999999999
Q ss_pred HHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCC
Q 010331 267 EAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGS 346 (513)
Q Consensus 267 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~ 346 (513)
+.+++.|++.||++++++.+.++..++ +++.+++...+. ++++++++|.||+++|.
T Consensus 219 ~~l~~~l~~~gV~i~~~~~V~~i~~~~-----------------------~~v~v~~~~~~~-g~~~~i~~D~vi~a~G~ 274 (466)
T PRK06115 219 KTLQKALTKQGMKFKLGSKVTGATAGA-----------------------DGVSLTLEPAAG-GAAETLQADYVLVAIGR 274 (466)
T ss_pred HHHHHHHHhcCCEEEECcEEEEEEEcC-----------------------CeEEEEEEEcCC-CceeEEEeCEEEEccCC
Confidence 999999999999999999999997643 334443321111 24568999999999999
Q ss_pred CCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010331 347 KPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423 (513)
Q Consensus 347 ~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~ 423 (513)
+||++.+... ..++..+++| +.||+++|+ +.|+|||+|||+.. |++++.|.+||+++|+||...
T Consensus 275 ~pn~~~l~~~---~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~--------~~la~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 275 RPYTQGLGLE---TVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSG--------PMLAHKAEDEAVACIERIAGK 338 (466)
T ss_pred ccccccCCcc---cccceeCCCC-EEECCCeec-CCCCEEEeeecCCC--------cccHHHHHHHHHHHHHHHcCC
Confidence 9998765422 3366777777 678999998 99999999999986 679999999999999999753
No 28
>PRK07846 mycothione reductase; Reviewed
Probab=99.97 E-value=1.1e-29 Score=264.95 Aligned_cols=273 Identities=19% Similarity=0.245 Sum_probs=194.4
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC----Cccc-----CCchhh--h---h-----hcc------c
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE----RFVF-----KPMLYE--L---L-----SGE------V 134 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~----~~~~-----~p~~~~--~---~-----~g~------~ 134 (513)
+||||||||+||.+||..+ .+.+|+|||++. |..+ +.++.. . . .|. .
T Consensus 2 yD~vVIG~G~~g~~aa~~~--------~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 73 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--------ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGV 73 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--------CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcC
Confidence 7999999999999998663 245999999864 1111 111100 0 0 010 0
Q ss_pred cCCcc-------hHhH-----HHH-hcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCC
Q 010331 135 DAWEI-------APRF-----ADL-LANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201 (513)
Q Consensus 135 ~~~~~-------~~~~-----~~~-~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs 201 (513)
+..++ ...+ ... ++..+++++.+++..++ ++ +|.+.+|++++||+||||||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~-------------~V~v~~g~~~~~d~lViATGs 138 (451)
T PRK07846 74 RWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIG--PK-------------TLRTGDGEEITADQVVIAAGS 138 (451)
T ss_pred CHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEec--CC-------------EEEECCCCEEEeCEEEEcCCC
Confidence 00011 1111 122 45578999999887773 22 477777778999999999999
Q ss_pred CCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHHH
Q 010331 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREAA 269 (513)
Q Consensus 202 ~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~~ 269 (513)
+|+.|++||... ..+.+.+++..+.... ++..+ ..+...+ .|+++++.+.+++..++++.+.+
T Consensus 139 ~p~~p~i~g~~~--~~~~~~~~~~~l~~~~---~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l 213 (451)
T PRK07846 139 RPVIPPVIADSG--VRYHTSDTIMRLPELP---ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERF 213 (451)
T ss_pred CCCCCCCCCcCC--ccEEchHHHhhhhhcC---CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHH
Confidence 999999998542 2344555554443211 11111 3444444 59999999999988888888777
Q ss_pred HHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCC
Q 010331 270 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 349 (513)
Q Consensus 270 ~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~ 349 (513)
.+.+ +.+|++++++.+.+++.++ +++.+++. +++++++|.|++|+|.+||
T Consensus 214 ~~l~-~~~v~i~~~~~v~~i~~~~-----------------------~~v~v~~~------~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 214 TELA-SKRWDVRLGRNVVGVSQDG-----------------------SGVTLRLD------DGSTVEADVLLVATGRVPN 263 (451)
T ss_pred HHHH-hcCeEEEeCCEEEEEEEcC-----------------------CEEEEEEC------CCcEeecCEEEEEECCccC
Confidence 6655 5689999999999997643 34445442 5678999999999999999
Q ss_pred CCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 350 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
++++... ..+++++++|+|.||+++|+ +.|+|||+|||+.. +++++.|.+||+++|+||..
T Consensus 264 ~~~l~~~---~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~--------~~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 264 GDLLDAA---AAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSP--------YQLKHVANHEARVVQHNLLH 324 (451)
T ss_pred ccccCch---hcCceECCCCcEeECCCccc-CCCCEEEEeecCCC--------ccChhHHHHHHHHHHHHHcC
Confidence 9887532 34788889999999999997 89999999999986 67889999999999999975
No 29
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.97 E-value=1.2e-29 Score=265.60 Aligned_cols=280 Identities=18% Similarity=0.224 Sum_probs=195.6
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC--------C----------CcccCCchhhh-----hh---
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS--------E----------RFVFKPMLYEL-----LS--- 131 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~--------~----------~~~~~p~~~~~-----~~--- 131 (513)
..+||+|||||+||+.||..++++ .+.+|+|||++ . |.+.+.+++.. ..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~-----~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~ 76 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATL-----YKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESA 76 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHh-----cCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhh
Confidence 358999999999999999999984 14499999973 2 11111111110 00
Q ss_pred --cc--------ccCC-----------cchHhHHHHhcC-CCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecC---C
Q 010331 132 --GE--------VDAW-----------EIAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE---S 186 (513)
Q Consensus 132 --g~--------~~~~-----------~~~~~~~~~~~~-~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~---~ 186 (513)
|. .+.. .+...+.+.++. .++++++++..-+++.. + .|... +
T Consensus 77 ~~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~--------v-----~V~~~~~~~ 143 (486)
T TIGR01423 77 GFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNV--------V-----LVRESADPK 143 (486)
T ss_pred ccCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCE--------E-----EEeeccCCC
Confidence 10 0000 112223344555 49999999876664321 1 12210 1
Q ss_pred ---ceEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH--------------HHHHh-cCcE
Q 010331 187 ---GLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF--------------ERLEE-KGIV 248 (513)
Q Consensus 187 ---g~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v--------------~~l~~-~~~v 248 (513)
.+++.||+||||||++|..|++||.+. + .+.+++..+.... ++..+ ..+.. ...|
T Consensus 144 ~~~~~~~~~d~lIIATGs~p~~p~i~G~~~-~---~~~~~~~~~~~~~---~~vvIIGgG~iG~E~A~~~~~l~~~G~~V 216 (486)
T TIGR01423 144 SAVKERLQAEHILLATGSWPQMLGIPGIEH-C---ISSNEAFYLDEPP---RRVLTVGGGFISVEFAGIFNAYKPRGGKV 216 (486)
T ss_pred CCcceEEECCEEEEecCCCCCCCCCCChhh-e---echhhhhccccCC---CeEEEECCCHHHHHHHHHHHHhccCCCeE
Confidence 247999999999999999999999642 2 2333433322110 11111 12222 2369
Q ss_pred EEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEeccccc
Q 010331 249 QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIK 328 (513)
Q Consensus 249 tli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~ 328 (513)
+++++.+.+++.+++.+.+.+.+.|+++||++++++.+.++...++ +.+.+.+.
T Consensus 217 tli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~----------------------~~~~v~~~---- 270 (486)
T TIGR01423 217 TLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNAD----------------------GSKHVTFE---- 270 (486)
T ss_pred EEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC----------------------ceEEEEEc----
Confidence 9999999999999999999999999999999999999999976431 22334332
Q ss_pred CCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHH
Q 010331 329 GLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 408 (513)
Q Consensus 329 ~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~ 408 (513)
+++++++|.|||++|.+||++.+... ..+++++++|+|.||+++|+ +.|||||+|||+.. +..++.
T Consensus 271 --~g~~i~~D~vl~a~G~~Pn~~~l~l~---~~gl~~~~~G~I~Vd~~l~T-s~~~IyA~GDv~~~--------~~l~~~ 336 (486)
T TIGR01423 271 --SGKTLDVDVVMMAIGRVPRTQTLQLD---KVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTDR--------VMLTPV 336 (486)
T ss_pred --CCCEEEcCEEEEeeCCCcCcccCCch---hhCceECCCCCEecCCCCcC-CCCCEEEeeecCCC--------cccHHH
Confidence 56689999999999999998766422 34788889999999999998 89999999999875 678999
Q ss_pred HHHHHHHHHHHHHH
Q 010331 409 AFQQADFAGWNLWA 422 (513)
Q Consensus 409 A~~qg~~~a~ni~~ 422 (513)
|.+||+++|.||..
T Consensus 337 A~~qG~~aa~ni~g 350 (486)
T TIGR01423 337 AINEGAAFVDTVFG 350 (486)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999974
No 30
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=4.2e-29 Score=260.69 Aligned_cols=277 Identities=18% Similarity=0.272 Sum_probs=194.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc-ccCCc----hhhhh---hc--cccCCcc---------
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF-VFKPM----LYELL---SG--EVDAWEI--------- 139 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~-~~~p~----~~~~~---~g--~~~~~~~--------- 139 (513)
++|||||||||||++||..|+++ +.+|+|||+++.+ ..+.. .|... .. ..+..++
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~------g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~ 76 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA------GKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTS 76 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC------CCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHH
Confidence 48999999999999999999995 4599999998632 21110 11000 00 0011111
Q ss_pred --hHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecC---CceEEEecEEEEeCCCCCCCCCCCCcccc
Q 010331 140 --APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE---SGLIVEYDWLVLSLGAEPKLDVVPGAAEF 214 (513)
Q Consensus 140 --~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~---~g~~i~yD~LVlAtGs~~~~~~ipG~~~~ 214 (513)
.....+.+.+.+++++.+++..++ ++ +|... +..++.||+||||||++++.|.+||..+.
T Consensus 77 ~~~~~~~~~~~~~gV~~~~g~~~~~~--~~-------------~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~ 141 (438)
T PRK07251 77 RLRGKNYAMLAGSGVDLYDAEAHFVS--NK-------------VIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADS 141 (438)
T ss_pred HHHHHHHHHHHhCCCEEEEEEEEEcc--CC-------------EEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCC
Confidence 111234556679999999876553 22 23332 23479999999999999999999997543
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEc
Q 010331 215 AFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 282 (513)
Q Consensus 215 ~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~ 282 (513)
.. +.+..++..+... -++..+ ..+...+ .|+++++.+.+++..++.+.+.+.+.|++.||++++
T Consensus 142 ~~-v~~~~~~~~~~~~---~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~ 217 (438)
T PRK07251 142 KH-VYDSTGIQSLETL---PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLL 217 (438)
T ss_pred Cc-EEchHHHhcchhc---CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 21 2233333322211 111111 3334443 599999999999988888888889999999999999
Q ss_pred CceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCC
Q 010331 283 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 362 (513)
Q Consensus 283 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~ 362 (513)
++.+.+++.++ +.+.+.. +++++++|.+|+|+|.+|+++.+... ..+
T Consensus 218 ~~~V~~i~~~~-----------------------~~v~v~~-------~g~~i~~D~viva~G~~p~~~~l~l~---~~~ 264 (438)
T PRK07251 218 NAHTTEVKNDG-----------------------DQVLVVT-------EDETYRFDALLYATGRKPNTEPLGLE---NTD 264 (438)
T ss_pred CCEEEEEEecC-----------------------CEEEEEE-------CCeEEEcCEEEEeeCCCCCcccCCch---hcC
Confidence 99999997643 3333331 45689999999999999998765422 235
Q ss_pred CccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 363 LPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 363 ~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
+..+++|+|.||+++|+ +.|||||+|||+.. +..+..|..||++++.++.+
T Consensus 265 ~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~~--------~~~~~~a~~~~~~~~~~~~~ 315 (438)
T PRK07251 265 IELTERGAIKVDDYCQT-SVPGVFAVGDVNGG--------PQFTYISLDDFRIVFGYLTG 315 (438)
T ss_pred cEECCCCcEEECCCccc-CCCCEEEeeecCCC--------cccHhHHHHHHHHHHHHHcC
Confidence 66788899999999998 89999999999875 67889999999999988875
No 31
>PTZ00058 glutathione reductase; Provisional
Probab=99.97 E-value=5.3e-29 Score=263.49 Aligned_cols=303 Identities=17% Similarity=0.244 Sum_probs=201.2
Q ss_pred CCCCCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC---------CcccCCchh-----h----h-hhc--
Q 010331 74 WPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE---------RFVFKPMLY-----E----L-LSG-- 132 (513)
Q Consensus 74 ~~~~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~---------~~~~~p~~~-----~----~-~~g-- 132 (513)
.+..+++||||||||+||++||..+++.| .+|+|||++. +.+.+.++. . . ..|
T Consensus 43 ~~~~~~yDvvVIG~G~aG~~aA~~aa~~G------~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~ 116 (561)
T PTZ00058 43 KKPRMVYDLIVIGGGSGGMAAARRAARNK------AKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFD 116 (561)
T ss_pred cCCCccccEEEECcCHHHHHHHHHHHHcC------CeEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCC
Confidence 33446789999999999999999999954 5999999864 111111111 0 0 001
Q ss_pred ---cccCCc-----------chHhHHHHhcCCCeEEEEEeEEEEeCCCCc------------CcCCCceeec-cceEecC
Q 010331 133 ---EVDAWE-----------IAPRFADLLANTGVQFFKDRVKLLCPSDHL------------GVNGPMACTH-GGTVLLE 185 (513)
Q Consensus 133 ---~~~~~~-----------~~~~~~~~~~~~~v~~~~~~V~~id~~~~~------------~~~~~~v~~~-~~~v~~~ 185 (513)
..+... +...+.+.+++.+|+++.++..-+++..-. ......+.+. ......+
T Consensus 117 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (561)
T PTZ00058 117 TQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLD 196 (561)
T ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecC
Confidence 001011 122344556677999999977555432100 0000011110 0011235
Q ss_pred CceEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEec
Q 010331 186 SGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINV 253 (513)
Q Consensus 186 ~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~ 253 (513)
+|.+++||+||||||++|..|++||.+ ++ .+.++...+.. -++..+ ..+...+ .|+++++
T Consensus 197 ~g~~i~ad~lVIATGS~P~~P~IpG~~-~v---~ts~~~~~l~~----pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~ 268 (561)
T PTZ00058 197 DGQVIEGKNILIAVGNKPIFPDVKGKE-FT---ISSDDFFKIKE----AKRIGIAGSGYIAVELINVVNRLGAESYIFAR 268 (561)
T ss_pred CCcEEECCEEEEecCCCCCCCCCCCce-eE---EEHHHHhhccC----CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEe
Confidence 667899999999999999999999953 22 23344333211 112211 3334433 5999999
Q ss_pred cCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcce
Q 010331 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 333 (513)
Q Consensus 254 ~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~ 333 (513)
.+.+++.+++.+.+.+++.|+++||+++++..+.++++.+. +++.+.+. .+++
T Consensus 269 ~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~----------------------~~v~v~~~-----~~~~ 321 (561)
T PTZ00058 269 GNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKE----------------------KNLTIYLS-----DGRK 321 (561)
T ss_pred cccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC----------------------CcEEEEEC-----CCCE
Confidence 99999999999999999999999999999999999986431 23333321 1346
Q ss_pred EEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccC-----------------
Q 010331 334 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD----------------- 396 (513)
Q Consensus 334 ~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~----------------- 396 (513)
++++|.|++|+|.+||++.+.... .++ .+++|+|.||+++|+ +.|+|||+|||+..++
T Consensus 322 ~i~aD~VlvA~Gr~Pn~~~L~l~~---~~~-~~~~G~I~VDe~lqT-s~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p 396 (561)
T PTZ00058 322 YEHFDYVIYCVGRSPNTEDLNLKA---LNI-KTPKGYIKVDDNQRT-SVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEP 396 (561)
T ss_pred EEECCEEEECcCCCCCccccCccc---cce-ecCCCeEEECcCCcc-CCCCEEEeEeccCcccccccccccccccccccc
Confidence 799999999999999988775432 133 346899999999998 9999999999998432
Q ss_pred -------CCCCC--CCCchHHHHHHHHHHHHHHHH
Q 010331 397 -------SSGRP--LPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 397 -------~~g~~--~~~~a~~A~~qg~~~a~ni~~ 422 (513)
..+++ .++++..|..||+++|.||..
T Consensus 397 ~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 397 YLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431 (561)
T ss_pred ccccccccccccccCcCchHHHHHHHHHHHHHHhC
Confidence 12233 378899999999999999975
No 32
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=4.9e-29 Score=262.38 Aligned_cols=288 Identities=22% Similarity=0.273 Sum_probs=191.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC----ccc--CC---chhh-----h-----hhcc------
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER----FVF--KP---MLYE-----L-----LSGE------ 133 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~----~~~--~p---~~~~-----~-----~~g~------ 133 (513)
.+|||||||||||++||.+|+++| .+|+|||+... ..+ -| ++.. . ..|.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G------~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 77 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLG------LKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPA 77 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC------CeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 589999999999999999999954 49999998641 000 01 0000 0 0010
Q ss_pred ccCCc-----------chHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCc--eEEEecEEEEeCC
Q 010331 134 VDAWE-----------IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSLG 200 (513)
Q Consensus 134 ~~~~~-----------~~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g--~~i~yD~LVlAtG 200 (513)
.+... +...+.+++++.++++++++++.++++.- +..... ..|.+++| .++.||+||||||
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~-~~~~~~-----~~v~~~~g~~~~~~~d~lViATG 151 (472)
T PRK05976 78 LDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIF-SPMPGT-----VSVETETGENEMIIPENLLIATG 151 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCC-cCCceE-----EEEEeCCCceEEEEcCEEEEeCC
Confidence 00000 11223355667799999999999987610 000000 14555665 5799999999999
Q ss_pred CCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHH
Q 010331 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREA 268 (513)
Q Consensus 201 s~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~ 268 (513)
++|+.+ ||.......+.+.+++..+... .++..+ ..+...+ .|+++++.+.+++..++.+.+.
T Consensus 152 s~p~~~--p~~~~~~~~~~~~~~~~~~~~~---~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~ 226 (472)
T PRK05976 152 SRPVEL--PGLPFDGEYVISSDEALSLETL---PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKE 226 (472)
T ss_pred CCCCCC--CCCCCCCceEEcchHhhCcccc---CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHH
Confidence 998643 3322111112233444332211 011111 3444444 5999999999999999999999
Q ss_pred HHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceE-EEecccccCCcceEEeeceEEEecCCC
Q 010331 269 ALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI-LELQPAIKGLESQIFEADLVLWTVGSK 347 (513)
Q Consensus 269 ~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~i~aD~vi~a~G~~ 347 (513)
+.+.|+++||++++++.+.+++...+ +++. +.+. ++ +.+++++|.||+|+|.+
T Consensus 227 l~~~l~~~gI~i~~~~~v~~i~~~~~----------------------~~~~~~~~~---~g-~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 227 VARLLKKLGVRVVTGAKVLGLTLKKD----------------------GGVLIVAEH---NG-EEKTLEADKVLVSVGRR 280 (472)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEecC----------------------CCEEEEEEe---CC-ceEEEEeCEEEEeeCCc
Confidence 99999999999999999999974110 2222 2211 11 23579999999999999
Q ss_pred CCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 348 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 348 p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
|+++.+... ..++.. .+|+|.||+++++ +.|+|||+|||+.. ++++..|.+||+++|.||..
T Consensus 281 p~~~~l~l~---~~~~~~-~~g~i~Vd~~l~t-s~~~IyAiGD~~~~--------~~~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 281 PNTEGIGLE---NTDIDV-EGGFIQIDDFCQT-KERHIYAIGDVIGE--------PQLAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred cCCCCCCch---hcCcee-cCCEEEECCCccc-CCCCEEEeeecCCC--------cccHHHHHHHHHHHHHHHcC
Confidence 998765322 123433 4689999999998 78999999999875 67899999999999999863
No 33
>PRK13748 putative mercuric reductase; Provisional
Probab=99.97 E-value=1.2e-28 Score=265.45 Aligned_cols=277 Identities=20% Similarity=0.299 Sum_probs=194.3
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccC-------C---chhh---------hh--hcc---
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-------P---MLYE---------LL--SGE--- 133 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~-------p---~~~~---------~~--~g~--- 133 (513)
..+|||||||||||++||.+|++.| .+|+|||++. +..+ | ++.. .. .|.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G------~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~ 169 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQG------ARVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAAT 169 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCC------CeEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhcccccCCccCC
Confidence 3589999999999999999999954 5999999863 1110 1 0000 00 011
Q ss_pred ---ccCCcchHh------------HHHHhcCC-CeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCc--eEEEecEE
Q 010331 134 ---VDAWEIAPR------------FADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWL 195 (513)
Q Consensus 134 ---~~~~~~~~~------------~~~~~~~~-~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g--~~i~yD~L 195 (513)
.+.+.+... +..+++.. +++++++++..++.... .|.+.+| .+++||+|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-------------~v~~~~g~~~~~~~d~l 236 (561)
T PRK13748 170 VPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTL-------------IVRLNDGGERVVAFDRC 236 (561)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEE-------------EEEeCCCceEEEEcCEE
Confidence 011111111 22334444 89999999988875432 3555555 36999999
Q ss_pred EEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCCh
Q 010331 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTP 263 (513)
Q Consensus 196 VlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~ 263 (513)
|||||++|+.|++||..+.. +.+..++..... . -++.++ ..+...+ .|+++++. .+++..++
T Consensus 237 viAtGs~p~~p~i~g~~~~~--~~~~~~~~~~~~-~--~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~~d~ 310 (561)
T PRK13748 237 LIATGASPAVPPIPGLKETP--YWTSTEALVSDT-I--PERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFREDP 310 (561)
T ss_pred EEcCCCCCCCCCCCCCCccc--eEccHHHhhccc-C--CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccccCH
Confidence 99999999999999975422 222222221110 0 011111 3444444 49999874 57777888
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEe
Q 010331 264 GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 343 (513)
Q Consensus 264 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a 343 (513)
.+.+.+++.|++.||++++++.+.+++.++ +.+.+.+ ++.++++|.||+|
T Consensus 311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-----------------------~~~~v~~-------~~~~i~~D~vi~a 360 (561)
T PRK13748 311 AIGEAVTAAFRAEGIEVLEHTQASQVAHVD-----------------------GEFVLTT-------GHGELRADKLLVA 360 (561)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC-----------------------CEEEEEe-------cCCeEEeCEEEEc
Confidence 999999999999999999999999987643 3333432 2236999999999
Q ss_pred cCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 344 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 344 ~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
+|.+||++++... ..+++++++|+|.||+++|+ +.|||||+|||+.. +..+..|..||+++|.||..
T Consensus 361 ~G~~pn~~~l~l~---~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 361 TGRAPNTRSLALD---AAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQ--------PQFVYVAAAAGTRAAINMTG 427 (561)
T ss_pred cCCCcCCCCcCch---hcCceECCCCCEeECCCccc-CCCCEEEeeecCCC--------ccchhHHHHHHHHHHHHHcC
Confidence 9999998765322 34788888999999999999 89999999999986 67888999999999999974
No 34
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.97 E-value=4.2e-29 Score=262.19 Aligned_cols=281 Identities=18% Similarity=0.194 Sum_probs=195.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC------------------CcccCCchhh-----hh--hc-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE------------------RFVFKPMLYE-----LL--SG- 132 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~------------------~~~~~p~~~~-----~~--~g- 132 (513)
++||||||||+||+.+|..+++. +.+|+|||+.. +.+.+.+++. .. ..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~------G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~ 75 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY------GAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRN 75 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhh
Confidence 47999999999999999999995 45999999631 1111111110 00 00
Q ss_pred -cccCCc-------------------chHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCc--eEE
Q 010331 133 -EVDAWE-------------------IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIV 190 (513)
Q Consensus 133 -~~~~~~-------------------~~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g--~~i 190 (513)
.+...+ +...+...++..++++++++..-+++..- .|...++ ..+
T Consensus 76 ~g~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v-------------~v~~~~g~~~~~ 142 (484)
T TIGR01438 76 YGWNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRI-------------KATNKKGKEKIY 142 (484)
T ss_pred cCcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEE-------------EEeccCCCceEE
Confidence 010000 12234445677899999998888765421 2332233 479
Q ss_pred EecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeec
Q 010331 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTIC 258 (513)
Q Consensus 191 ~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll 258 (513)
+||+||||||++|+.|++||..+... +.+++..+.... ++.++ ..+...+ .|+++.+ ..++
T Consensus 143 ~~d~lVIATGs~p~~p~ipG~~~~~~---~~~~~~~~~~~~---~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l 215 (484)
T TIGR01438 143 SAERFLIATGERPRYPGIPGAKELCI---TSDDLFSLPYCP---GKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILL 215 (484)
T ss_pred EeCEEEEecCCCCCCCCCCCccceee---cHHHhhcccccC---CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccc
Confidence 99999999999999999999755322 333333222111 11111 3444444 5999987 5788
Q ss_pred CCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeec
Q 010331 259 PTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD 338 (513)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD 338 (513)
+.+++.+.+.+++.|+++||++++++.+.++...+ +.+.+++. .+.+++++++|
T Consensus 216 ~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-----------------------~~~~v~~~---~~~~~~~i~~D 269 (484)
T TIGR01438 216 RGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE-----------------------AKVKVTFT---DSTNGIEEEYD 269 (484)
T ss_pred cccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-----------------------CeEEEEEe---cCCcceEEEeC
Confidence 88999999999999999999999999998887643 23334432 11123579999
Q ss_pred eEEEecCCCCCCCCCCCCCCccCCCccCC-CCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHH
Q 010331 339 LVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417 (513)
Q Consensus 339 ~vi~a~G~~p~~~~l~~~~~~~~~~~~~~-~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a 417 (513)
.||||+|.+||++.+... ..++++++ +|+|.||+++|+ +.|+|||+|||+.. .+.+++.|.+||+++|
T Consensus 270 ~vl~a~G~~pn~~~l~l~---~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~GDv~~~-------~~~l~~~A~~~g~~aa 338 (484)
T TIGR01438 270 TVLLAIGRDACTRKLNLE---NVGVKINKKTGKIPADEEEQT-NVPYIYAVGDILED-------KQELTPVAIQAGRLLA 338 (484)
T ss_pred EEEEEecCCcCCCcCCcc---cccceecCcCCeEecCCCccc-CCCCEEEEEEecCC-------CccchHHHHHHHHHHH
Confidence 999999999998876432 34677765 599999999998 89999999999963 1568899999999999
Q ss_pred HHHHH
Q 010331 418 WNLWA 422 (513)
Q Consensus 418 ~ni~~ 422 (513)
+||..
T Consensus 339 ~~i~~ 343 (484)
T TIGR01438 339 QRLFS 343 (484)
T ss_pred HHHhc
Confidence 99975
No 35
>PRK14727 putative mercuric reductase; Provisional
Probab=99.97 E-value=1.8e-28 Score=258.19 Aligned_cols=279 Identities=16% Similarity=0.251 Sum_probs=193.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc----C---C---chh-----hhh-----hcc---
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF----K---P---MLY-----ELL-----SGE--- 133 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~----~---p---~~~-----~~~-----~g~--- 133 (513)
..++||||||+|+||+++|..|+++ +.+|+|||+.+.+.. . | ++. ... .|.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~------g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~ 87 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEH------GARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAV 87 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccC
Confidence 3468999999999999999999985 449999998732111 0 1 000 000 010
Q ss_pred ---ccCCcch-------H-----hHHHHhcCC-CeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCc--eEEEecEE
Q 010331 134 ---VDAWEIA-------P-----RFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWL 195 (513)
Q Consensus 134 ---~~~~~~~-------~-----~~~~~~~~~-~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g--~~i~yD~L 195 (513)
.+...+. . .+...++.. +++++++++.-++...- .|.+.+| .+++||+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v-------------~v~~~~g~~~~~~~d~l 154 (479)
T PRK14727 88 APSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTL-------------VVRLHDGGERVLAADRC 154 (479)
T ss_pred CCccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEE-------------EEEeCCCceEEEEeCEE
Confidence 0000010 0 123334433 89999998877754321 3555555 36999999
Q ss_pred EEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCCh
Q 010331 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTP 263 (513)
Q Consensus 196 VlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~ 263 (513)
|||||++|..|++||..+.. .+ +..+..... .+ -++.++ ..+...+ .|+++++. .+++..++
T Consensus 155 ViATGs~p~~p~i~G~~~~~-~~-~~~~~l~~~-~~--~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~ 228 (479)
T PRK14727 155 LIATGSTPTIPPIPGLMDTP-YW-TSTEALFSD-EL--PASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFREDP 228 (479)
T ss_pred EEecCCCCCCCCCCCcCccc-ee-cchHHhccc-cC--CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCcchH
Confidence 99999999999999974421 12 222221111 00 011111 3444444 59999874 67888888
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEe
Q 010331 264 GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 343 (513)
Q Consensus 264 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a 343 (513)
.+.+.+++.|++.||++++++.+.++..++ +.+.+.. ++.++++|.||+|
T Consensus 229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~-----------------------~~~~v~~-------~~g~i~aD~VlvA 278 (479)
T PRK14727 229 LLGETLTACFEKEGIEVLNNTQASLVEHDD-----------------------NGFVLTT-------GHGELRAEKLLIS 278 (479)
T ss_pred HHHHHHHHHHHhCCCEEEcCcEEEEEEEeC-----------------------CEEEEEE-------cCCeEEeCEEEEc
Confidence 899999999999999999999999987543 3344432 2336999999999
Q ss_pred cCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 344 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 344 ~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
+|..||+.++... ..+++++++|+|.||+++|+ +.|+|||+|||+.. |..++.|..||+.+|.||..
T Consensus 279 ~G~~pn~~~l~l~---~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 279 TGRHANTHDLNLE---AVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDL--------PQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred cCCCCCccCCCch---hhCceecCCCCEEECCCeec-CCCCEEEeeecCCc--------chhhhHHHHHHHHHHHHHcC
Confidence 9999998865432 24678888999999999998 89999999999986 67888999999999999975
No 36
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.97 E-value=2e-28 Score=257.46 Aligned_cols=280 Identities=23% Similarity=0.275 Sum_probs=194.6
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccC-------Cc---h------h---hhhhccccCCc--
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-------PM---L------Y---ELLSGEVDAWE-- 138 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~-------p~---~------~---~~~~g~~~~~~-- 138 (513)
+||||||||+||++||.+|++. +.+|+|||+.. +..+ |. + . +.....++...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~------G~~v~lie~~~-~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~ 74 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQL------GLKVALVEKEY-LGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVS 74 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhC------CCeEEEEecCC-CCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCc
Confidence 7999999999999999999984 45999999833 2111 10 0 0 00011111111
Q ss_pred -----c-----------hHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCc-eEEEecEEEEeCCC
Q 010331 139 -----I-----------APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGA 201 (513)
Q Consensus 139 -----~-----------~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g-~~i~yD~LVlAtGs 201 (513)
+ ...+..+++..+++++.+++..+++... .+...++ .++.||+||||||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-------------~v~~~~g~~~~~~d~lVlAtG~ 141 (461)
T TIGR01350 75 VDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTV-------------LVTGENGEETLTAKNIIIATGS 141 (461)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEE-------------EEecCCCcEEEEeCEEEEcCCC
Confidence 0 0112234556789999998887764432 3444444 47999999999999
Q ss_pred CCCCCCCC-CccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHH
Q 010331 202 EPKLDVVP-GAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREA 268 (513)
Q Consensus 202 ~~~~~~ip-G~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~ 268 (513)
+|+.+++| +... ..+.+.+++..+.... ++..+ ..+...+ .|+++++.+.+++..++.+.+.
T Consensus 142 ~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~ 216 (461)
T TIGR01350 142 RPRSLPGPFDFDG--EVVITSTGALNLKEVP---ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKV 216 (461)
T ss_pred CCCCCCCCCCCCC--ceEEcchHHhccccCC---CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHH
Confidence 99877776 3221 1233444443322111 11111 3334333 5999999999999888999999
Q ss_pred HHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCC
Q 010331 269 ALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 348 (513)
Q Consensus 269 ~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p 348 (513)
+.+.+++.||++++++.+.+++.++ +.+.+++. ++ +.+++++|.+|+|+|..|
T Consensus 217 ~~~~l~~~gi~i~~~~~v~~i~~~~-----------------------~~v~v~~~---~g-~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 217 VAKALKKKGVKILTNTKVTAVEKND-----------------------DQVVYENK---GG-ETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeC-----------------------CEEEEEEe---CC-cEEEEEeCEEEEecCCcc
Confidence 9999999999999999999987643 34444432 11 125799999999999999
Q ss_pred CCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010331 349 LLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423 (513)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~ 423 (513)
+++.+... ..++.++.+|+|.||+++|+ +.|+|||+|||+.. ++++..|.+||+.+|.||...
T Consensus 270 ~~~~l~~~---~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~--------~~~~~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 270 NTEGLGLE---NLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIGG--------PMLAHVASHEGIVAAENIAGK 332 (461)
T ss_pred cCCCCCcH---hhCceECCCCcEeeCCCccc-CCCCEEEeeecCCC--------cccHHHHHHHHHHHHHHHcCC
Confidence 98732111 34678888999999999998 89999999999975 678999999999999999753
No 37
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=9e-29 Score=259.95 Aligned_cols=281 Identities=21% Similarity=0.251 Sum_probs=187.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC---------CcccCCchh-----hhh-----hccccCCcc
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE---------RFVFKPMLY-----ELL-----SGEVDAWEI 139 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~---------~~~~~p~~~-----~~~-----~g~~~~~~~ 139 (513)
++|||||||||||++||.+|++. +.+|+|||++. +.+.+.++. ... ..... ...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~------G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~-~~~ 76 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL------GLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-GEV 76 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-cCc
Confidence 47999999999999999999985 45999999863 111111111 000 00011 000
Q ss_pred h------------------HhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCc--eEEEecEEEEeC
Q 010331 140 A------------------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSL 199 (513)
Q Consensus 140 ~------------------~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g--~~i~yD~LVlAt 199 (513)
. ......++..+++.+.++..-++...- .|...+| .+++||+|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v-------------~v~~~~g~~~~~~~d~lViAT 143 (466)
T PRK07818 77 TFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTL-------------EVDLNDGGTETVTFDNAIIAT 143 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEE-------------EEEecCCCeeEEEcCEEEEeC
Confidence 0 111122334577777776555543221 2433444 479999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHH
Q 010331 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNRE 267 (513)
Q Consensus 200 Gs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~ 267 (513)
|++|+.+ ||..... .+.+.++..... .. -++..+ ..+...+ .|+++++.+.+++..++.+.+
T Consensus 144 Gs~p~~~--pg~~~~~-~v~~~~~~~~~~-~~--~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~ 217 (466)
T PRK07818 144 GSSTRLL--PGTSLSE-NVVTYEEQILSR-EL--PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSK 217 (466)
T ss_pred CCCCCCC--CCCCCCC-cEEchHHHhccc-cC--CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHH
Confidence 9998653 6642111 112222221111 10 011111 3444444 599999999999999999999
Q ss_pred HHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCC
Q 010331 268 AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 347 (513)
Q Consensus 268 ~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~ 347 (513)
.+++.|+++||++++++.+.+++.++ +.+.+.+.. .++ +.+++++|.||+|+|.+
T Consensus 218 ~l~~~l~~~gV~i~~~~~v~~i~~~~-----------------------~~~~v~~~~-~~g-~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 218 EIAKQYKKLGVKILTGTKVESIDDNG-----------------------SKVTVTVSK-KDG-KAQELEADKVLQAIGFA 272 (466)
T ss_pred HHHHHHHHCCCEEEECCEEEEEEEeC-----------------------CeEEEEEEe-cCC-CeEEEEeCEEEECcCcc
Confidence 99999999999999999999997643 233333321 011 23579999999999999
Q ss_pred CCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 348 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 348 p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
||++.+... ..+++++++|+|.||+++|+ +.|+|||+|||+.. +++++.|.+||+++|.||..
T Consensus 273 pn~~~l~l~---~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~--------~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 273 PRVEGYGLE---KTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAK--------LQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred cCCCCCCch---hcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCC--------cccHhHHHHHHHHHHHHHcC
Confidence 998764321 34677888899999999998 89999999999875 67999999999999999974
No 38
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.97 E-value=4.5e-29 Score=259.74 Aligned_cols=276 Identities=22% Similarity=0.306 Sum_probs=210.5
Q ss_pred HHHHHhhhccccCCCCCeEEEEeCCCCcccCC-chhhhhhccccC-Cc-chHhHHHHhcCCCeEEEE-EeEEEEeCCCCc
Q 010331 93 YTALRLESLVWQDDKKPQVLLVDQSERFVFKP-MLYELLSGEVDA-WE-IAPRFADLLANTGVQFFK-DRVKLLCPSDHL 168 (513)
Q Consensus 93 ~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p-~~~~~~~g~~~~-~~-~~~~~~~~~~~~~v~~~~-~~V~~id~~~~~ 168 (513)
+||++|+++ .++++|||||+++++.|.| .++.+..+.... ++ +.....+++.+.+++++. .+|+.|+++++
T Consensus 1 saA~~l~~~----~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~- 75 (427)
T TIGR03385 1 SAASRVRRL----DKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQ- 75 (427)
T ss_pred CHHHHHHhh----CCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCC-
Confidence 478888875 3678999999999999988 577777665542 22 333345565788999875 59999988765
Q ss_pred CcCCCceeeccceEecC---CceEEE--ecEEEEeCCCCCCCCCCCCcc-ccCCCCCCHHHHHHHHHHHHHH--HhhhH-
Q 010331 169 GVNGPMACTHGGTVLLE---SGLIVE--YDWLVLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKLSEL--ERRNF- 239 (513)
Q Consensus 169 ~~~~~~v~~~~~~v~~~---~g~~i~--yD~LVlAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~l~~~l~~~--~~~~v- 239 (513)
.+.+. ++.++. ||+||||||++++.+.+||++ ++.+.+++++++..++..+... ++.++
T Consensus 76 ------------~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvVi 143 (427)
T TIGR03385 76 ------------TVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVII 143 (427)
T ss_pred ------------EEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEE
Confidence 23332 234677 999999999999999999975 5566778888888777766332 22222
Q ss_pred ----------HHHHhcC-cEEEEeccCee-cCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccc
Q 010331 240 ----------ERLEEKG-IVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAI 307 (513)
Q Consensus 240 ----------~~l~~~~-~vtli~~~~~l-l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~ 307 (513)
..+...+ .|+++++.+.+ .+.+++.+.+.+.+.|++.||++++++.+.++..++
T Consensus 144 GgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-------------- 209 (427)
T TIGR03385 144 GGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEE-------------- 209 (427)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCC--------------
Confidence 3444444 49999988877 466778888888999999999999999999997632
Q ss_pred cccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEE
Q 010331 308 PNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFA 387 (513)
Q Consensus 308 ~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~Vfa 387 (513)
.+ +.+. +++++++|.+|+|+|.+|+++++.. .+++++++|+|.||+++++ +.|+|||
T Consensus 210 ----------~~-v~~~------~g~~i~~D~vi~a~G~~p~~~~l~~-----~gl~~~~~G~i~vd~~~~t-~~~~Vya 266 (427)
T TIGR03385 210 ----------RV-KVFT------SGGVYQADMVILATGIKPNSELAKD-----SGLKLGETGAIWVNEKFQT-SVPNIYA 266 (427)
T ss_pred ----------CE-EEEc------CCCEEEeCEEEECCCccCCHHHHHh-----cCcccCCCCCEEECCCcEe-CCCCEEE
Confidence 12 2221 5678999999999999999887754 3677888999999999998 8999999
Q ss_pred EcccccccCC-CCC-CCCCchHHHHHHHHHHHHHHHH
Q 010331 388 LGDSSALRDS-SGR-PLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 388 iGD~a~~~~~-~g~-~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
+|||+..++. .++ ..+++++.|.+||+++|+||.+
T Consensus 267 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 267 AGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG 303 (427)
T ss_pred eeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcC
Confidence 9999987654 222 2356899999999999999975
No 39
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.96 E-value=3.2e-28 Score=255.85 Aligned_cols=277 Identities=23% Similarity=0.308 Sum_probs=191.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCc----------hh------h---hhh-c------
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM----------LY------E---LLS-G------ 132 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~----------~~------~---~~~-g------ 132 (513)
.+||||||||+||++||.+|++. +.+|+|||++. +..... ++ . ... |
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~-~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~ 75 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL------GKKVALIEKGP-LGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGP 75 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCc-cccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 47999999999999999999984 45999999943 211110 00 0 000 0
Q ss_pred cccCCcchHhH------------HHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCC
Q 010331 133 EVDAWEIAPRF------------ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200 (513)
Q Consensus 133 ~~~~~~~~~~~------------~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtG 200 (513)
..+..++.... ...++..+++++.+++..++.. .+.+ ++.++.||+||||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---------------~v~v-~~~~~~~d~lIiATG 139 (460)
T PRK06292 76 KIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPN---------------TVEV-NGERIEAKNIVIATG 139 (460)
T ss_pred ccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCC---------------EEEE-CcEEEEeCEEEEeCC
Confidence 11111222211 2223445788888887766543 2444 556899999999999
Q ss_pred CCCCCCCCCCccc-cCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHH
Q 010331 201 AEPKLDVVPGAAE-FAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNRE 267 (513)
Q Consensus 201 s~~~~~~ipG~~~-~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~ 267 (513)
++ .|.+||..+ ....+.+.+++..+.... ++..+ ..+...+ .|+++++.+.+++.+++.+.+
T Consensus 140 s~--~p~ipg~~~~~~~~~~~~~~~~~~~~~~---k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~ 214 (460)
T PRK06292 140 SR--VPPIPGVWLILGDRLLTSDDAFELDKLP---KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSK 214 (460)
T ss_pred CC--CCCCCCCcccCCCcEECchHHhCccccC---CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHH
Confidence 98 556777532 111223344443222110 11111 3344443 599999999999988899999
Q ss_pred HHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCC
Q 010331 268 AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 347 (513)
Q Consensus 268 ~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~ 347 (513)
.+++.|+++ |++++++.+.+++..+. ..+.+++. . ++++++++|.||+++|.+
T Consensus 215 ~~~~~l~~~-I~i~~~~~v~~i~~~~~----------------------~~v~~~~~---~-~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 215 QAQKILSKE-FKIKLGAKVTSVEKSGD----------------------EKVEELEK---G-GKTETIEADYVLVATGRR 267 (460)
T ss_pred HHHHHHhhc-cEEEcCCEEEEEEEcCC----------------------ceEEEEEc---C-CceEEEEeCEEEEccCCc
Confidence 999999999 99999999999976431 13333221 1 245689999999999999
Q ss_pred CCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 348 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 348 p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
||++.+... ..+++++++|+|.||+++|+ +.|+|||+|||+.. ++++..|..||+++|.||.+
T Consensus 268 p~~~~l~l~---~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~--------~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 268 PNTDGLGLE---NTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGK--------PPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred cCCCCCCcH---hhCCEecCCCcEeECCCccc-CCCCEEEEEecCCC--------ccchhHHHHHHHHHHHHhcC
Confidence 998865322 34678888999999999999 89999999999976 67889999999999999975
No 40
>PRK10262 thioredoxin reductase; Provisional
Probab=99.96 E-value=7.3e-29 Score=248.44 Aligned_cols=290 Identities=13% Similarity=0.098 Sum_probs=190.3
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC---CcccCCchhhhhhc--cccCCcchHhHHHHhcCCCe
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE---RFVFKPMLYELLSG--EVDAWEIAPRFADLLANTGV 152 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~---~~~~~p~~~~~~~g--~~~~~~~~~~~~~~~~~~~v 152 (513)
..++|||||||||||+||..|++++ +++++||... .+.+.+..+.+... .....++...+.++...+++
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g------~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARAN------LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFET 78 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC------CCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCC
Confidence 4689999999999999999999854 4899998543 22222222222110 11222345566677767778
Q ss_pred EEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHH
Q 010331 153 QFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS 232 (513)
Q Consensus 153 ~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~ 232 (513)
++..++|+.|+..++. +.+..+++ ++.||+||+|||+.++.|++||...+. .+.+..+........
T Consensus 79 ~~~~~~v~~v~~~~~~-----------~~v~~~~~-~~~~d~vilAtG~~~~~~~i~g~~~~~--~~~v~~~~~~~~~~~ 144 (321)
T PRK10262 79 EIIFDHINKVDLQNRP-----------FRLTGDSG-EYTCDALIIATGASARYLGLPSEEAFK--GRGVSACATCDGFFY 144 (321)
T ss_pred EEEeeEEEEEEecCCe-----------EEEEecCC-EEEECEEEECCCCCCCCCCCCCHHHcC--CCcEEEeecCCHHHc
Confidence 8888888888765441 13443334 689999999999999999999954321 111111101111110
Q ss_pred HHHhhhH-----------HHHHhc-CcEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEecccccccccc
Q 010331 233 ELERRNF-----------ERLEEK-GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVK 300 (513)
Q Consensus 233 ~~~~~~v-----------~~l~~~-~~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~ 300 (513)
..++..+ ..|... ..|+++++.+.+. ..+...+.+++.|++.||++++++.+.++..++...
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~---- 218 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGV---- 218 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccE----
Confidence 1111111 334443 3599998876552 235567778888999999999999999997743100
Q ss_pred CCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCC-----
Q 010331 301 QPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE----- 375 (513)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~----- 375 (513)
..+.++ ....+.+.+++++|.|||++|.+||+.++.. ++.+ ++|+|.||+
T Consensus 219 ----------------~~v~~~--~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~------~l~~-~~g~i~vd~~~~~~ 273 (321)
T PRK10262 219 ----------------TGVRLR--DTQNSDNIESLDVAGLFVAIGHSPNTAIFEG------QLEL-ENGYIKVQSGIHGN 273 (321)
T ss_pred ----------------EEEEEE--EcCCCCeEEEEECCEEEEEeCCccChhHhhc------cccc-cCCEEEECCCCccc
Confidence 123332 1111123468999999999999999876653 2444 368999997
Q ss_pred CccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 376 TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 376 ~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
++++ ++|+|||+|||+... .++...|+.+|..+|..|...+++
T Consensus 274 ~~~t-~~~~VyA~GD~~~~~-------~~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 274 ATQT-SIPGVFAAGDVMDHI-------YRQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred cccc-CCCCEEECeeccCCC-------cceEEEEehhHHHHHHHHHHHHHh
Confidence 5676 899999999999752 456667999999999999988764
No 41
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.96 E-value=5.9e-29 Score=256.38 Aligned_cols=291 Identities=19% Similarity=0.278 Sum_probs=237.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc-CCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF-KPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~-~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
+.++||||.|+||..+..++.+.. ...++||++-..++..| ..++..++.+..+.+++...-.+|+++.+++++.+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~---~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~ 79 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESA---PDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTG 79 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcC---cccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcC
Confidence 468999999999999999998842 36789999998888766 55888999998888899888889999999999987
Q ss_pred -eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCcc-ccCCCCCCHHHHHHHHHHHHHHH
Q 010331 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKLSELE 235 (513)
Q Consensus 158 -~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~l~~~l~~~~ 235 (513)
.|+.||++++ .|+++.|.++.||.||+||||.|..+++||.. ..++.+++++|...+...-....
T Consensus 80 ~~v~~idr~~k-------------~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~ 146 (793)
T COG1251 80 EKVIQIDRANK-------------VVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKK 146 (793)
T ss_pred CeeEEeccCcc-------------eEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccC
Confidence 9999999887 58999999999999999999999999999964 46788999999988877743333
Q ss_pred hhhH-----------HHHHhcC-cEEEEeccCeecCC-CChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCC
Q 010331 236 RRNF-----------ERLEEKG-IVQAINVETTICPT-GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQP 302 (513)
Q Consensus 236 ~~~v-----------~~l~~~~-~vtli~~~~~ll~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~ 302 (513)
+..+ ..|...+ .+++++..+.++.+ ++....+.++..++++|++++++....++...+..
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~------- 219 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKV------- 219 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcce-------
Confidence 3222 3444554 48999988887765 44555566778999999999999988888764321
Q ss_pred CcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCC
Q 010331 303 ESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGH 382 (513)
Q Consensus 303 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~ 382 (513)
.++.+. +|.++++|+|||++|++||+++.... |+..+. .|.||+++|| +.
T Consensus 220 --------------~~vr~~--------DG~~i~ad~VV~a~GIrPn~ela~~a-----Glavnr--GIvvnd~mqT-sd 269 (793)
T COG1251 220 --------------EGVRFA--------DGTEIPADLVVMAVGIRPNDELAKEA-----GLAVNR--GIVVNDYMQT-SD 269 (793)
T ss_pred --------------eeEeec--------CCCcccceeEEEecccccccHhHHhc-----CcCcCC--Ceeecccccc-cC
Confidence 333343 89999999999999999998877654 566665 5999999999 99
Q ss_pred CCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 383 PRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 383 p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
|+|||+|+|+.... ....+...+..|++++|.++.....+
T Consensus 270 pdIYAvGEcae~~g----~~yGLVaP~yeq~~v~a~hl~~~~~~ 309 (793)
T COG1251 270 PDIYAVGECAEHRG----KVYGLVAPLYEQAKVLADHLCGGEAE 309 (793)
T ss_pred CCeeehhhHHHhcC----ccceehhHHHHHHHHHHHHhccCccc
Confidence 99999999998732 23567778999999999999886554
No 42
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.96 E-value=3.1e-28 Score=255.20 Aligned_cols=277 Identities=17% Similarity=0.206 Sum_probs=192.3
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcc----c--CC---chhh----------hhhcc--------
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV----F--KP---MLYE----------LLSGE-------- 133 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~----~--~p---~~~~----------~~~g~-------- 133 (513)
+|||||||+||++||.++++. +.+|+|||+++.-. . .| ++.. ...|.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~------g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 75 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN------GKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSIS 75 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC------CCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCc
Confidence 799999999999999999984 45999999975210 0 11 1110 00010
Q ss_pred ccCCcch-----------HhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCc-eEEEecEEEEeCCC
Q 010331 134 VDAWEIA-----------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGA 201 (513)
Q Consensus 134 ~~~~~~~-----------~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g-~~i~yD~LVlAtGs 201 (513)
.+...+. ..+..+++..+++++++++..++.... .|..+++ .+++||+||||||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v-------------~v~~~~~~~~~~~d~lviATGs 142 (458)
T PRK06912 76 IDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRV-------------RVEYGDKEEVVDAEQFIIAAGS 142 (458)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEE-------------EEeeCCCcEEEECCEEEEeCCC
Confidence 0111111 122334556799999999988865432 3444444 47999999999999
Q ss_pred CCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHHH
Q 010331 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREAA 269 (513)
Q Consensus 202 ~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~~ 269 (513)
+|+.+++++.... .+.+.+++..+.... ++..+ ..+...+ .|+++++.+.+++..++.+.+.+
T Consensus 143 ~p~~~p~~~~~~~--~v~~~~~~~~~~~~~---~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l 217 (458)
T PRK06912 143 EPTELPFAPFDGK--WIINSKHAMSLPSIP---SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHIL 217 (458)
T ss_pred CCCCCCCCCCCCC--eEEcchHHhCccccC---CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHH
Confidence 9987777765321 122233443332211 11111 2334333 59999999999998888999999
Q ss_pred HHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCC
Q 010331 270 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 349 (513)
Q Consensus 270 ~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~ 349 (513)
.+.|++.||++++++.+.+++.++ ..+.++. +++.+++++|.||+|+|.+|+
T Consensus 218 ~~~L~~~GI~i~~~~~V~~i~~~~-----------------------~~v~~~~-----~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 218 REKLENDGVKIFTGAALKGLNSYK-----------------------KQALFEY-----EGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHCCCEEEECCEEEEEEEcC-----------------------CEEEEEE-----CCceEEEEeCEEEEecCCccC
Confidence 999999999999999999987643 2333331 112357999999999999999
Q ss_pred CCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 350 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
++.+... ..++..+++| |.||+++|+ +.|||||+|||+.. ++++..|.+||+++|.||..
T Consensus 270 ~~~l~l~---~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~~--------~~la~~A~~~g~~aa~~~~g 329 (458)
T PRK06912 270 VQQLNLE---KAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIGG--------IQLAHVAFHEGTTAALHASG 329 (458)
T ss_pred CCCCCch---hcCceecCCC-EEeCCCeec-CCCCEEEEeecCCC--------cccHHHHHHHHHHHHHHHcC
Confidence 8765321 2356677667 999999998 89999999999875 78999999999999999864
No 43
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.96 E-value=1.1e-27 Score=250.22 Aligned_cols=211 Identities=19% Similarity=0.240 Sum_probs=159.1
Q ss_pred CCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHH
Q 010331 150 TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229 (513)
Q Consensus 150 ~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~ 229 (513)
.+++++.++..-++ .+ +|.+.+|.+++||+||||||++|..|++++. ....+.+.+++..+..
T Consensus 105 ~gv~~~~g~~~~~~--~~-------------~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~--~~~~~~~~~~~~~l~~ 167 (452)
T TIGR03452 105 PNIDVYDGHARFVG--PR-------------TLRTGDGEEITGDQIVIAAGSRPYIPPAIAD--SGVRYHTNEDIMRLPE 167 (452)
T ss_pred CCeEEEEEEEEEec--CC-------------EEEECCCcEEEeCEEEEEECCCCCCCCCCCC--CCCEEEcHHHHHhhhh
Confidence 68888888665552 22 4667677789999999999999987754332 1223466667665543
Q ss_pred HHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccc
Q 010331 230 KLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297 (513)
Q Consensus 230 ~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~ 297 (513)
.. ++..+ ..+...+ .|+++++.+.+++.+++.+.+.+.+.+ +.+|++++++.+.+++.++
T Consensus 168 ~~---k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~---- 239 (452)
T TIGR03452 168 LP---ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDG---- 239 (452)
T ss_pred cC---CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcC----
Confidence 21 11111 3444443 599999998888888888887777655 4689999999999997643
Q ss_pred cccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCc
Q 010331 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETL 377 (513)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l 377 (513)
+.+.+.+. +++++++|.|++++|.+||++++... ..|++++++|+|.||+++
T Consensus 240 -------------------~~v~v~~~------~g~~i~~D~vl~a~G~~pn~~~l~~~---~~gl~~~~~G~i~vd~~~ 291 (452)
T TIGR03452 240 -------------------DGVTLTLD------DGSTVTADVLLVATGRVPNGDLLDAE---AAGVEVDEDGRIKVDEYG 291 (452)
T ss_pred -------------------CeEEEEEc------CCCEEEcCEEEEeeccCcCCCCcCch---hcCeeECCCCcEeeCCCc
Confidence 34445442 46689999999999999998876532 347888899999999999
Q ss_pred cccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 378 CVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 378 ~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
|+ +.|+|||+|||+.. +++++.|.+||+++|+||..
T Consensus 292 ~T-s~~~IyA~GD~~~~--------~~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 292 RT-SARGVWALGDVSSP--------YQLKHVANAEARVVKHNLLH 327 (452)
T ss_pred cc-CCCCEEEeecccCc--------ccChhHHHHHHHHHHHHhcC
Confidence 97 99999999999985 67889999999999999975
No 44
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.96 E-value=4.9e-28 Score=255.30 Aligned_cols=275 Identities=20% Similarity=0.274 Sum_probs=188.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC----C----cccC-------C---chhh-----hh-----
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE----R----FVFK-------P---MLYE-----LL----- 130 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~----~----~~~~-------p---~~~~-----~~----- 130 (513)
.+||+||||||||++||.++++++ .+|+|||+.+ . +..+ | +++. ..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G------~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~ 78 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHG------KKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQ 78 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCC------CeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHh
Confidence 479999999999999999999954 5999999621 0 1110 1 1000 00
Q ss_pred -hc-----cccCCcchHhH-----------HHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecC---CceEE
Q 010331 131 -SG-----EVDAWEIAPRF-----------ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE---SGLIV 190 (513)
Q Consensus 131 -~g-----~~~~~~~~~~~-----------~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~---~g~~i 190 (513)
.| ..+..++.... ...++..+|+++++++..++.. +|.+. ++..+
T Consensus 79 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~---------------~v~v~~~~~~~~i 143 (499)
T PTZ00052 79 MYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEH---------------TVSYGDNSQEETI 143 (499)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCC---------------EEEEeeCCCceEE
Confidence 01 11111222222 2223345788888877665322 23322 23579
Q ss_pred EecEEEEeCCCCCCCCC-CCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCee
Q 010331 191 EYDWLVLSLGAEPKLDV-VPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTI 257 (513)
Q Consensus 191 ~yD~LVlAtGs~~~~~~-ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~l 257 (513)
+||+||||||++|..|. +||..+.. .+.+++..+.... ++..+ ..|...+ .|+++++ ..+
T Consensus 144 ~~d~lIIATGs~p~~p~~i~G~~~~~---~~~~~~~~~~~~~---~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~ 216 (499)
T PTZ00052 144 TAKYILIATGGRPSIPEDVPGAKEYS---ITSDDIFSLSKDP---GKTLIVGASYIGLETAGFLNELGFDVTVAVR-SIP 216 (499)
T ss_pred ECCEEEEecCCCCCCCCCCCCcccee---ecHHHHhhhhcCC---CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc-Ccc
Confidence 99999999999998774 89865432 2333433322110 11111 3444444 5999987 467
Q ss_pred cCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEee
Q 010331 258 CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEA 337 (513)
Q Consensus 258 l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~a 337 (513)
++.+++.+.+.+++.|++.||++++++.+.++...+ +.+.+.+. +++++++
T Consensus 217 l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-----------------------~~~~v~~~------~g~~i~~ 267 (499)
T PTZ00052 217 LRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-----------------------DKIKVLFS------DGTTELF 267 (499)
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-----------------------CeEEEEEC------CCCEEEc
Confidence 788899999999999999999999999998887643 22334432 5678999
Q ss_pred ceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHH
Q 010331 338 DLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417 (513)
Q Consensus 338 D~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a 417 (513)
|.|||++|.+||++++... ..+++++++|++.+++. ++ +.|+|||+|||+.. .+.++..|.+||+++|
T Consensus 268 D~vl~a~G~~pn~~~l~l~---~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~~-------~~~l~~~A~~~g~~aa 335 (499)
T PTZ00052 268 DTVLYATGRKPDIKGLNLN---AIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVEG-------RPELTPVAIKAGILLA 335 (499)
T ss_pred CEEEEeeCCCCCccccCch---hcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecCC-------CcccHHHHHHHHHHHH
Confidence 9999999999999877422 34678888999888876 77 89999999999863 1678999999999999
Q ss_pred HHHHH
Q 010331 418 WNLWA 422 (513)
Q Consensus 418 ~ni~~ 422 (513)
.||..
T Consensus 336 ~ni~g 340 (499)
T PTZ00052 336 RRLFK 340 (499)
T ss_pred HHHhC
Confidence 99975
No 45
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.96 E-value=2.9e-27 Score=248.90 Aligned_cols=284 Identities=17% Similarity=0.221 Sum_probs=192.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeC------CCCc-----cc--CC---chhh--hh--------hc
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQ------SERF-----VF--KP---MLYE--LL--------SG 132 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~------~~~~-----~~--~p---~~~~--~~--------~g 132 (513)
.+||+|||||+||++||.++++. +.+|+|||+ .... .+ .| ++.. .. .-
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~------g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~ 77 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQL------GLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH 77 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhC------CCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence 57999999999999999999995 459999998 1111 00 01 0000 00 00
Q ss_pred cccCCc------------------chHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEec--CCceEEEe
Q 010331 133 EVDAWE------------------IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLL--ESGLIVEY 192 (513)
Q Consensus 133 ~~~~~~------------------~~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~--~~g~~i~y 192 (513)
..+... +...+.++++..+++++.+++..++.+... ++|.+ +++.+++|
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-----------~~v~v~~~~~~~~~~ 146 (475)
T PRK06327 78 GIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAG-----------YEIKVTGEDETVITA 146 (475)
T ss_pred CccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCC-----------CEEEEecCCCeEEEe
Confidence 011111 111233445567999999999888743321 13443 23458999
Q ss_pred cEEEEeCCCCCCCC-CCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecC
Q 010331 193 DWLVLSLGAEPKLD-VVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICP 259 (513)
Q Consensus 193 D~LVlAtGs~~~~~-~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~ 259 (513)
|+||||||++|+.+ .++..... +.+.+++..+... -++..+ ..+...+ .|+++++.+.+++
T Consensus 147 d~lViATGs~p~~~p~~~~~~~~---~~~~~~~~~~~~~---~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 220 (475)
T PRK06327 147 KHVIIATGSEPRHLPGVPFDNKI---ILDNTGALNFTEV---PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA 220 (475)
T ss_pred CEEEEeCCCCCCCCCCCCCCCce---EECcHHHhccccc---CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC
Confidence 99999999998643 22211111 1222333222111 011111 3334433 5999999999999
Q ss_pred CCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeece
Q 010331 260 TGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 339 (513)
Q Consensus 260 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~ 339 (513)
..++.+.+.+.+.|+++||++++++.+.+++.++ +.+.+.+.+ .+++.+++++|.
T Consensus 221 ~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-----------------------~~v~v~~~~--~~g~~~~i~~D~ 275 (475)
T PRK06327 221 AADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG-----------------------KGVSVAYTD--ADGEAQTLEVDK 275 (475)
T ss_pred cCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC-----------------------CEEEEEEEe--CCCceeEEEcCE
Confidence 8888999999999999999999999999997643 334444321 111225799999
Q ss_pred EEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHH
Q 010331 340 VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419 (513)
Q Consensus 340 vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~n 419 (513)
|++++|.+|+++.+... ..+++++++|+|.||+++|+ +.|+|||+|||+.. ++++..|..||..+|.|
T Consensus 276 vl~a~G~~p~~~~l~~~---~~g~~~~~~G~i~vd~~~~T-s~~~VyA~GD~~~~--------~~~~~~A~~~G~~aa~~ 343 (475)
T PRK06327 276 LIVSIGRVPNTDGLGLE---AVGLKLDERGFIPVDDHCRT-NVPNVYAIGDVVRG--------PMLAHKAEEEGVAVAER 343 (475)
T ss_pred EEEccCCccCCCCCCcH---hhCceeCCCCeEeECCCCcc-CCCCEEEEEeccCC--------cchHHHHHHHHHHHHHH
Confidence 99999999998765422 34678889999999999998 89999999999875 67899999999999999
Q ss_pred HHH
Q 010331 420 LWA 422 (513)
Q Consensus 420 i~~ 422 (513)
|..
T Consensus 344 i~g 346 (475)
T PRK06327 344 IAG 346 (475)
T ss_pred HcC
Confidence 975
No 46
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.96 E-value=4.1e-27 Score=252.24 Aligned_cols=219 Identities=17% Similarity=0.162 Sum_probs=153.6
Q ss_pred CeEEEEEeEEEEeCCCCcCcCCCceeeccceEec-CCceEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHH
Q 010331 151 GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLL-ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229 (513)
Q Consensus 151 ~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~-~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~ 229 (513)
+++++.+...-+++. +|.. .+++++.||+||||||++|..|++++... ..+.+.+++..+..
T Consensus 248 ~v~vi~G~a~f~~~~---------------~v~v~~~g~~i~ad~lIIATGS~P~~P~~~~~~~--~~V~ts~d~~~l~~ 310 (659)
T PTZ00153 248 HVQVIYERGHIVDKN---------------TIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQ--KSVFTSDTAVKLEG 310 (659)
T ss_pred ceEEEEeEEEEecCC---------------eEEEccCCEEEECCEEEEcCCCCCCCCCCCCCCC--CcEEehHHhhhhhh
Confidence 377777766544432 2322 35668999999999999998776655422 22334555554432
Q ss_pred HHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHHHHHHH-HhCCcEEEcCceeeEEecccccc
Q 010331 230 KLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREAALKVL-SARKVQLVLGYFVRCIRRVGEFE 296 (513)
Q Consensus 230 ~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~~~~~l-~~~gV~v~~~~~v~~i~~~~~~~ 296 (513)
.. ++.++ ..+...+ .|+++++.+.+++.+++.+.+.+.+.+ +++||++++++.|.+++..+..
T Consensus 311 lp---k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~- 386 (659)
T PTZ00153 311 LQ---NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGN- 386 (659)
T ss_pred cC---CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-
Confidence 10 11111 3334333 599999999999999999988888865 6799999999999999764311
Q ss_pred ccccCCCcccccccccccCCCceEEEecccccCC---------cceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCC
Q 010331 297 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGL---------ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA 367 (513)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~---------~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~ 367 (513)
..+.+.+....++. +.+++++|.||||+|.+||++.+... ..++..+
T Consensus 387 --------------------~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~---~~gi~~~- 442 (659)
T PTZ00153 387 --------------------QPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLD---KLKIQMK- 442 (659)
T ss_pred --------------------eEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCch---hcCCccc-
Confidence 12444332111110 12479999999999999999876422 2356666
Q ss_pred CCCeEeCCCccccC-----CCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 368 RGQAETDETLCVKG-----HPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~-----~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
+|+|.||++||+.. +|+|||+|||+.. +++++.|..||+++|+||..
T Consensus 443 ~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~--------~~La~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 443 RGFVSVDEHLRVLREDQEVYDNIFCIGDANGK--------QMLAHTASHQALKVVDWIEG 494 (659)
T ss_pred CCEEeECCCCCcCCCCCCCCCCEEEEEecCCC--------ccCHHHHHHHHHHHHHHHcC
Confidence 49999999999942 6999999999864 67999999999999999975
No 47
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.96 E-value=2.2e-28 Score=228.11 Aligned_cols=302 Identities=22% Similarity=0.306 Sum_probs=224.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEE
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (513)
..+.+|+|||||.+|+++|..+.+.. ..-+|.|||+.++|+|+|++..+-.|....+.-.....+++ ..+..+++
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl----~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~li-P~~a~wi~ 111 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKL----GSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLI-PKGATWIK 111 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhc----CCCceEEecchhhcccCcceEEeccchhhhhhccCcccccc-cCCcHHHH
Confidence 45789999999999999999998753 45699999999999999999877776554444444444444 45677788
Q ss_pred EeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCcccc-----CCCCCCHHHHHHHHHHH
Q 010331 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEF-----AFPFSTLEDACRVDRKL 231 (513)
Q Consensus 157 ~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~-----~~~~~~~~~a~~l~~~l 231 (513)
..|+..+|+++ +|.+.+|++|.|||||||+|.+.++..|+|+.|. +-..+++..+....+.+
T Consensus 112 ekv~~f~P~~N-------------~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~ 178 (446)
T KOG3851|consen 112 EKVKEFNPDKN-------------TVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKEL 178 (446)
T ss_pred HHHHhcCCCcC-------------eEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHH
Confidence 89999999887 5899999999999999999999999999997542 33456677777777777
Q ss_pred HHHHhhh--H---------------------HHHHhcCc---EEEEeccCeecCC--CChhHHHHHHHHHHhCCcEEEcC
Q 010331 232 SELERRN--F---------------------ERLEEKGI---VQAINVETTICPT--GTPGNREAALKVLSARKVQLVLG 283 (513)
Q Consensus 232 ~~~~~~~--v---------------------~~l~~~~~---vtli~~~~~ll~~--~~~~~~~~~~~~l~~~gV~v~~~ 283 (513)
..++... + ..+++.+. +.++.... ++. .-....+.+++..++++|+|...
T Consensus 179 ~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Ts--l~~iFgVk~Y~~AL~k~~~~rni~vn~k 256 (446)
T KOG3851|consen 179 MNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTS--LPTIFGVKHYADALEKVIQERNITVNYK 256 (446)
T ss_pred HhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecC--ccceecHHHHHHHHHHHHHhcceEeeec
Confidence 7665432 1 33444332 33333211 121 12455667788889999999999
Q ss_pred ceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCC
Q 010331 284 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDL 363 (513)
Q Consensus 284 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~ 363 (513)
..+.|+..++. ..+++.- ++.+..++++++++.+.....++ +++..+.
T Consensus 257 rnLiEV~~~~~-----------------------~AvFe~L--~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~------ 304 (446)
T KOG3851|consen 257 RNLIEVRTNDR-----------------------KAVFENL--DKPGVTEEIEYSLLHVTPPMSTP-EVLANSD------ 304 (446)
T ss_pred cceEEEeccch-----------------------hhHHHhc--CCCCceeEEeeeeeeccCCCCCh-hhhhcCc------
Confidence 99999988652 1112211 12125678999999999888887 6665432
Q ss_pred ccCCCCCeEeC-CCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCCCCCcccCCc
Q 010331 364 PLNARGQAETD-ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNL 437 (513)
Q Consensus 364 ~~~~~G~i~Vd-~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~~~~f~~~~~ 437 (513)
-.|..|++.|| .++|+..+||||+||||.+. |..+++..+..|..++-+|+...++|+.+. -.|..+
T Consensus 305 ~adktGfvdVD~~TlQs~kypNVFgiGDc~n~------PnsKTaAAvaaq~~vv~~nl~~~m~g~~pt-~~ydGY 372 (446)
T KOG3851|consen 305 LADKTGFVDVDQSTLQSKKYPNVFGIGDCMNL------PNSKTAAAVAAQSPVVDKNLTQVMQGKRPT-MKYDGY 372 (446)
T ss_pred ccCcccceecChhhhccccCCCceeeccccCC------CchhhHHHHHhcCchhhhhHHHHhcCCCcc-eeecCc
Confidence 26889999999 79999999999999999998 448999999999999999999999997642 234444
No 48
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.96 E-value=4.2e-28 Score=259.06 Aligned_cols=281 Identities=18% Similarity=0.165 Sum_probs=186.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhh--hhcc--ccCCcchHhHHHHhcCCCeEE
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL--LSGE--VDAWEIAPRFADLLANTGVQF 154 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~--~~g~--~~~~~~~~~~~~~~~~~~v~~ 154 (513)
.+||||||||||||+||.+|++. +++|+|||++............ ..+. ....++...+++.+++.++++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~------g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~ 77 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA------KLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKF 77 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC------CCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEE
Confidence 58999999999999999999984 5699999997532211111100 1111 122355666777777789999
Q ss_pred EEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCccccC----CCCCCHHHHHHHHHH
Q 010331 155 FKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFA----FPFSTLEDACRVDRK 230 (513)
Q Consensus 155 ~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~----~~~~~~~~a~~l~~~ 230 (513)
+.++|+.++.+++. ..|.+.++ .+.||+||||||+.++.+++||..++. +.+...+. .
T Consensus 78 ~~~~V~~i~~~~~~-----------~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~------~ 139 (555)
T TIGR03143 78 LQAEVLDVDFDGDI-----------KTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDG------E 139 (555)
T ss_pred eccEEEEEEecCCE-----------EEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecCh------h
Confidence 98899999865431 13555555 689999999999999999999964321 11111111 0
Q ss_pred HHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEecccccccc
Q 010331 231 LSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298 (513)
Q Consensus 231 l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~ 298 (513)
....++..+ ..+...+ .|+++++.+.+.. . .....+.+++.||++++++.+.++..++..
T Consensus 140 ~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~--~---~~~~~~~~~~~gV~i~~~~~V~~i~~~~~v--- 211 (555)
T TIGR03143 140 FFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC--A---KLIAEKVKNHPKIEVKFNTELKEATGDDGL--- 211 (555)
T ss_pred hcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc--C---HHHHHHHHhCCCcEEEeCCEEEEEEcCCcE---
Confidence 000111111 3334433 5999998775422 1 222334455679999999999999764311
Q ss_pred ccCCCcccccccccccCCCceEEEecccccCCcceE--Eeece----EEEecCCCCCCCCCCCCCCccCCCccCCCCCeE
Q 010331 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADL----VLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAE 372 (513)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~--i~aD~----vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~ 372 (513)
..+.+. ...++ +..+ +++|. |||++|++|++.++.. ++.++++|+|.
T Consensus 212 ------------------~~v~~~--~~~~G-~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~------~l~l~~~G~I~ 264 (555)
T TIGR03143 212 ------------------RYAKFV--NNVTG-EITEYKAPKDAGTFGVFVFVGYAPSSELFKG------VVELDKRGYIP 264 (555)
T ss_pred ------------------EEEEEE--ECCCC-CEEEEeccccccceEEEEEeCCCCChhHHhh------hcccCCCCeEE
Confidence 111111 11111 1222 34676 9999999999887653 36778889999
Q ss_pred eCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 373 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 373 Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
||+++++ +.|+|||+|||+... ++.+..|++||+.+|.||...+.+
T Consensus 265 vd~~~~T-s~p~IyAaGDv~~~~-------~~~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 265 TNEDMET-NVPGVYAAGDLRPKE-------LRQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred eCCcccc-CCCCEEEceeccCCC-------cchheeHHhhHHHHHHHHHHHHHh
Confidence 9999999 899999999997531 455678999999999999988754
No 49
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.96 E-value=3.8e-28 Score=257.51 Aligned_cols=282 Identities=19% Similarity=0.203 Sum_probs=191.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC--CcccCCchhhhhhc-cccCCcchHhHHHHhcCCCeE
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE--RFVFKPMLYELLSG-EVDAWEIAPRFADLLANTGVQ 153 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~--~~~~~p~~~~~~~g-~~~~~~~~~~~~~~~~~~~v~ 153 (513)
...++||||||||||++||.+|++. +++|+||++.. .......++.+..- .....++...+.+++++++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~------G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~ 283 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK------GLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPID 283 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCe
Confidence 3458999999999999999999994 55999998531 11111111111110 112334566777778788999
Q ss_pred EEEE-eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCccccC----CCCCCHHHHHHHH
Q 010331 154 FFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFA----FPFSTLEDACRVD 228 (513)
Q Consensus 154 ~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~----~~~~~~~~a~~l~ 228 (513)
++.+ +|+.++.+.+. ..+.+++|..+.||+||+|||+.++.+++||..++. +.+...+.
T Consensus 284 i~~~~~V~~I~~~~~~-----------~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~----- 347 (515)
T TIGR03140 284 LMENQRAKKIETEDGL-----------IVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDG----- 347 (515)
T ss_pred EEcCCEEEEEEecCCe-----------EEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccCh-----
Confidence 9875 89988765431 246677777899999999999999989999964321 11111111
Q ss_pred HHHHHHHhhhH-----------HHHHhc-CcEEEEeccCeecCCCChhHHHHHHHHHHh-CCcEEEcCceeeEEeccccc
Q 010331 229 RKLSELERRNF-----------ERLEEK-GIVQAINVETTICPTGTPGNREAALKVLSA-RKVQLVLGYFVRCIRRVGEF 295 (513)
Q Consensus 229 ~~l~~~~~~~v-----------~~l~~~-~~vtli~~~~~ll~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~ 295 (513)
.....++..+ ..+... ..|++++..+.+.. ...+.+.+++ +||++++++.+.++..++
T Consensus 348 -~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~-- 418 (515)
T TIGR03140 348 -PFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------DKVLQDKLKSLPNVDILTSAQTTEIVGDG-- 418 (515)
T ss_pred -hhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------hHHHHHHHhcCCCCEEEECCeeEEEEcCC--
Confidence 0100111111 333333 35899987765532 2445666766 699999999999997643
Q ss_pred cccccCCCcccccccccccCCCce-EEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeC
Q 010331 296 EASVKQPESGAIPNIAADKNSDKY-ILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD 374 (513)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd 374 (513)
+.+ .+.+.....+ ++++++||.||+++|.+||++++.. . ++++++|+|.||
T Consensus 419 ---------------------~~v~~v~~~~~~~~-~~~~i~~D~vi~a~G~~Pn~~~l~~-----~-~~~~~~G~I~vd 470 (515)
T TIGR03140 419 ---------------------DKVTGIRYQDRNSG-EEKQLDLDGVFVQIGLVPNTEWLKD-----A-VELNRRGEIVID 470 (515)
T ss_pred ---------------------CEEEEEEEEECCCC-cEEEEEcCEEEEEeCCcCCchHHhh-----h-cccCCCCeEEEC
Confidence 122 1333211111 3468999999999999999988764 2 567788999999
Q ss_pred CCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHC
Q 010331 375 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425 (513)
Q Consensus 375 ~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~ 425 (513)
+++|+ +.|+|||+|||+..+ .+++..|+.+|..+|.+|...+.
T Consensus 471 ~~~~T-s~p~IyAaGDv~~~~-------~~~~~~A~~~G~~Aa~~i~~~~~ 513 (515)
T TIGR03140 471 ERGRT-SVPGIFAAGDVTTVP-------YKQIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred CCCCC-CCCCEEEcccccCCc-------cceEEEEEccHHHHHHHHHHHHh
Confidence 99998 899999999999862 35677899999999999988653
No 50
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.95 E-value=3e-27 Score=250.94 Aligned_cols=284 Identities=19% Similarity=0.209 Sum_probs=194.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC--cccCCchhhhhhc-cccCCcchHhHHHHhcCCCeE
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER--FVFKPMLYELLSG-EVDAWEIAPRFADLLANTGVQ 153 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~--~~~~p~~~~~~~g-~~~~~~~~~~~~~~~~~~~v~ 153 (513)
...++||||||||||++||.+|+++ +++++||+++.. ......++.+..- .....++...+.+++++++++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~------G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~ 282 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK------GIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVD 282 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCE
Confidence 3468999999999999999999995 559999987421 1001111111100 122335667778888888999
Q ss_pred EEEE-eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCccccC----CCCCCHHHHHHHH
Q 010331 154 FFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFA----FPFSTLEDACRVD 228 (513)
Q Consensus 154 ~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~----~~~~~~~~a~~l~ 228 (513)
++.+ +|++|+.++.. +.|.+.++.++.||+||+|||+.++.+++||..++. +.+...+.
T Consensus 283 i~~~~~V~~I~~~~~~-----------~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~----- 346 (517)
T PRK15317 283 IMNLQRASKLEPAAGL-----------IEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDG----- 346 (517)
T ss_pred EEcCCEEEEEEecCCe-----------EEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCc-----
Confidence 8875 89999775321 246677777899999999999999999999964431 11111111
Q ss_pred HHHHHHHhhhH-----------HHHHhc-CcEEEEeccCeecCCCChhHHHHHHHHHHh-CCcEEEcCceeeEEeccccc
Q 010331 229 RKLSELERRNF-----------ERLEEK-GIVQAINVETTICPTGTPGNREAALKVLSA-RKVQLVLGYFVRCIRRVGEF 295 (513)
Q Consensus 229 ~~l~~~~~~~v-----------~~l~~~-~~vtli~~~~~ll~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~ 295 (513)
.....++..+ ..|... ..|+++++.+.+.. .+.+.+.+.+ .||++++++.+.++.+++
T Consensus 347 -~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~-- 417 (517)
T PRK15317 347 -PLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------DQVLQDKLRSLPNVTIITNAQTTEVTGDG-- 417 (517)
T ss_pred -hhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc------cHHHHHHHhcCCCcEEEECcEEEEEEcCC--
Confidence 0000111111 233333 34888887765532 2344555665 699999999999998753
Q ss_pred cccccCCCcccccccccccCCCce-EEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeC
Q 010331 296 EASVKQPESGAIPNIAADKNSDKY-ILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD 374 (513)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd 374 (513)
+.+ .+++.+..++ +.++++||.+++++|.+||+++++.. +.++++|+|.||
T Consensus 418 ---------------------g~v~~v~~~~~~~g-~~~~i~~D~v~~~~G~~p~~~~l~~~------v~~~~~g~i~vd 469 (517)
T PRK15317 418 ---------------------DKVTGLTYKDRTTG-EEHHLELEGVFVQIGLVPNTEWLKGT------VELNRRGEIIVD 469 (517)
T ss_pred ---------------------CcEEEEEEEECCCC-cEEEEEcCEEEEeECCccCchHHhhh------eeeCCCCcEEEC
Confidence 122 1333321122 34579999999999999999888641 567888999999
Q ss_pred CCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCC
Q 010331 375 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 427 (513)
Q Consensus 375 ~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~ 427 (513)
+++|+ ++|+|||+|||+..+ .+++..|+.+|..+|.++...+...
T Consensus 470 ~~l~T-s~p~IyAaGDv~~~~-------~k~~~~A~~eG~~Aa~~~~~~l~~~ 514 (517)
T PRK15317 470 ARGAT-SVPGVFAAGDCTTVP-------YKQIIIAMGEGAKAALSAFDYLIRN 514 (517)
T ss_pred cCCCC-CCCCEEECccccCCC-------CCEEEEhhhhHHHHHHHHHHHHhhc
Confidence 99998 999999999999863 4778899999999999999887643
No 51
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.95 E-value=1e-26 Score=242.45 Aligned_cols=281 Identities=21% Similarity=0.128 Sum_probs=180.0
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|+|||||+||+++|..|++. +++|+|||+.+...... .+.. .....+.++.....+.+++.+++++.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~------G~~V~vie~~~~~GG~l-~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~ 203 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA------GHSVTVFEALHKPGGVV-TYGI-PEFRLPKEIVVTEIKTLKKLGVTFRMN 203 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC------CCcEEEEecCCCCCcEe-eecC-CCccCCHHHHHHHHHHHHhCCcEEEeC
Confidence 458999999999999999999984 55999999976432111 0111 111112344444455667789999988
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCC-CCCCCCCCCccccCCCCCCHHHHHHHHHHHH----
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA-EPKLDVVPGAAEFAFPFSTLEDACRVDRKLS---- 232 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs-~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~---- 232 (513)
.+... .+.+++. ...||+||||||+ .++.+++||.+. ..+.+..+.........
T Consensus 204 ~~v~~------------------~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~--~gv~~~~~~l~~~~~~~~~~~ 262 (449)
T TIGR01316 204 FLVGK------------------TATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEEL--CGVYSANDFLTRANLMKAYEF 262 (449)
T ss_pred CccCC------------------cCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCC--CCcEEHHHHHHHHhhcccccc
Confidence 64321 2344333 3579999999998 688888999631 11222222211111100
Q ss_pred --------HHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEecc
Q 010331 233 --------ELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 292 (513)
Q Consensus 233 --------~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~ 292 (513)
..++.++ ..+...+ .|+++.+.... .++. .....+.+++.||++++++.+.++..+
T Consensus 263 ~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~--~~~~--~~~~~~~l~~~GV~~~~~~~~~~i~~~ 338 (449)
T TIGR01316 263 PHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRE--DMTA--RVEEIAHAEEEGVKFHFLCQPVEIIGD 338 (449)
T ss_pred cccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcc--cCCC--CHHHHHHHHhCCCEEEeccCcEEEEEc
Confidence 0112221 2333333 49998876542 1221 122345678899999999999998753
Q ss_pred ccccccccCCCcccccccccccCCCceEEE---ec-cccc--------CCcceEEeeceEEEecCCCCCCCCCCCCCCcc
Q 010331 293 GEFEASVKQPESGAIPNIAADKNSDKYILE---LQ-PAIK--------GLESQIFEADLVLWTVGSKPLLPHVEPPNNRL 360 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~-~~~~--------~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~ 360 (513)
++.. + ..+.+. +. .... .++..++++|.||+++|+.|++.++..
T Consensus 339 ~~g~-------v------------~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~----- 394 (449)
T TIGR01316 339 EEGN-------V------------RAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAET----- 394 (449)
T ss_pred CCCe-------E------------EEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhc-----
Confidence 2100 0 111111 00 0000 113457999999999999999876653
Q ss_pred CCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010331 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 424 (513)
Q Consensus 361 ~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l 424 (513)
.+++++++|+|.||+++++ +.|+|||+|||+.. +.++..|++||+.+|.+|...|
T Consensus 395 ~gl~~~~~G~i~vd~~~~T-s~~~VfA~GD~~~g--------~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 395 TRLKTSERGTIVVDEDQRT-SIPGVFAGGDIILG--------AATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred cCcccCCCCeEEeCCCCcc-CCCCEEEecCCCCC--------cHHHHHHHHHHHHHHHHHHhhC
Confidence 3677888999999999998 89999999999875 6789999999999999998653
No 52
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.95 E-value=1.5e-26 Score=253.64 Aligned_cols=285 Identities=16% Similarity=0.148 Sum_probs=183.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEE
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (513)
...++|+||||||||++||..|++. +++|+|+|+.+..... +...+++...+.++.....+++...|++++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~------G~~VtV~Ek~~~~GG~--lr~~IP~~Rlp~evL~~die~l~~~GVe~~~ 608 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA------GHPVTVFEREENAGGV--VKNIIPQFRIPAELIQHDIEFVKAHGVKFEF 608 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc------CCeEEEEecccccCcc--eeeecccccccHHHHHHHHHHHHHcCCEEEe
Confidence 3468999999999999999999995 4599999998754322 2122233222334444444666678999998
Q ss_pred EeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCC-CCCCCCCccccCCCCCCHHHHHHHHH---HHH
Q 010331 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDR---KLS 232 (513)
Q Consensus 157 ~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~l~~---~l~ 232 (513)
+....++ +++.....||+||||||+.+ ..+++||..++.+ ...+.....+. .+.
T Consensus 609 gt~Vdi~--------------------le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~--saldfL~~~k~~~~~~~ 666 (1019)
T PRK09853 609 GCSPDLT--------------------VEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVI--KALPFLEEYKNKGTALK 666 (1019)
T ss_pred CceeEEE--------------------hhhheeccCCEEEECcCCCCCCCCCCCCccCCce--ehHHHHHHHhhhccccc
Confidence 7543332 22333567999999999974 4567888543332 22222111111 111
Q ss_pred HHHhhhH-----------HHH-HhcC--cEEEEeccC-eecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccc
Q 010331 233 ELERRNF-----------ERL-EEKG--IVQAINVET-TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297 (513)
Q Consensus 233 ~~~~~~v-----------~~l-~~~~--~vtli~~~~-~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~ 297 (513)
..++.+| ..+ +..+ .|+++.+.. ..++..++ .+.+.+ +.||+++.+..+.++..++.+.
T Consensus 667 ~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~e----Ele~Al-eeGVe~~~~~~p~~I~~dG~l~- 740 (1019)
T PRK09853 667 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWRE----EYEEAL-EDGVEFKELLNPESFDADGTLT- 740 (1019)
T ss_pred CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHH----HHHHHH-HcCCEEEeCCceEEEEcCCcEE-
Confidence 1112221 122 2223 699998765 34444333 333333 4799999999999886432110
Q ss_pred cccCCCcccccccccccCC-Cce-EEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCC
Q 010331 298 SVKQPESGAIPNIAADKNS-DKY-ILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE 375 (513)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~-~~v-~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~ 375 (513)
.......+.+. +.. .+. . +++.++++|.||+|+|..|+++++.. .|++++++|+|.||+
T Consensus 741 --------~~~~~lg~~d~~Gr~~~v~-----t-g~~~~I~aD~VIvAIG~~Pntelle~-----~GL~ld~~G~I~VDe 801 (1019)
T PRK09853 741 --------CRVMKLGEPDESGRRRPVE-----T-GETVTLEADTVITAIGEQVDTELLKA-----NGIPLDKKGWPVVDA 801 (1019)
T ss_pred --------EEEEEeecccCCCceEEee-----C-CCeEEEEeCEEEECCCCcCChhHHHh-----cCccccCCCCEEeCC
Confidence 00000000000 111 111 1 25678999999999999999888754 367788899999999
Q ss_pred CccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHC
Q 010331 376 TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425 (513)
Q Consensus 376 ~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~ 425 (513)
++++ +.|+|||+|||+.. |.++..|+.||+.+|.||.+...
T Consensus 802 tlqT-s~pgVFAaGD~a~G--------p~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 802 NGET-SLTNVYMIGDVQRG--------PSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred Cccc-CCCCEEEEeccccC--------chHHHHHHHHHHHHHHHHhhhcC
Confidence 9998 89999999999876 77899999999999999998765
No 53
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.95 E-value=2.6e-26 Score=240.63 Aligned_cols=285 Identities=18% Similarity=0.101 Sum_probs=185.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEE
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (513)
...++|+||||||||+++|..|++. +++|+|+|+++...... .........+.++.....+++++.+++++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~------g~~V~lie~~~~~gG~l--~~gip~~~~~~~~~~~~~~~l~~~gv~~~~ 209 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK------GYDVTIFEARDKAGGLL--RYGIPEFRLPKDIVDREVERLLKLGVEIRT 209 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCCCCcEe--eccCCCccCCHHHHHHHHHHHHHcCCEEEe
Confidence 4457999999999999999999984 55999999987542111 001111112335555666777788999988
Q ss_pred EeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCC-CCCCCCCCccccCCCCCCHHHHHHHHHH-----
Q 010331 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRK----- 230 (513)
Q Consensus 157 ~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~----- 230 (513)
+..... .+.+++. .+.||+||+|||+. ++.+++||... ..+.+..+.......
T Consensus 210 ~~~v~~------------------~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~--~gv~~~~~~l~~~~~~~~~~ 268 (457)
T PRK11749 210 NTEVGR------------------DITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENL--GGVYSAVDFLTRVNQAVADY 268 (457)
T ss_pred CCEECC------------------ccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccC--CCcEEHHHHHHHHhhccccc
Confidence 765311 1233333 37899999999985 67778888632 112222222111110
Q ss_pred -HHHHHhhhH-----------HHHHhcC--cEEEEeccCe-ecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccc
Q 010331 231 -LSELERRNF-----------ERLEEKG--IVQAINVETT-ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 295 (513)
Q Consensus 231 -l~~~~~~~v-----------~~l~~~~--~vtli~~~~~-ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~ 295 (513)
+...++.++ ..+...+ .|+++.+... .++.. ....+.+++.||++++++.+.++..++..
T Consensus 269 ~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~-----~~~~~~~~~~GV~i~~~~~v~~i~~~~~~ 343 (457)
T PRK11749 269 DLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPAS-----EEEVEHAKEEGVEFEWLAAPVEILGDEGR 343 (457)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC-----HHHHHHHHHCCCEEEecCCcEEEEecCCc
Confidence 000111111 3333333 5999987543 22222 12346678899999999999998764311
Q ss_pred cccccCCCcccccccccccCCCceEEEe---cccc--------cCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCc
Q 010331 296 EASVKQPESGAIPNIAADKNSDKYILEL---QPAI--------KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 364 (513)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~~~~--------~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~ 364 (513)
. .++.+.. ...+ ..++++++++|.||+++|++|++.++.. ..+++
T Consensus 344 ~--------------------~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~----~~gl~ 399 (457)
T PRK11749 344 V--------------------TGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILST----TPGLE 399 (457)
T ss_pred e--------------------EEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhcc----ccCcc
Confidence 0 1122210 0000 0124568999999999999999766543 23577
Q ss_pred cCCCCCeEeCC-CccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCC
Q 010331 365 LNARGQAETDE-TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428 (513)
Q Consensus 365 ~~~~G~i~Vd~-~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~ 428 (513)
++++|+|.||+ ++++ +.|+|||+|||+.. ++++..|++||+.+|.||.+.+.++.
T Consensus 400 ~~~~g~i~vd~~~~~T-s~~~VfA~GD~~~~--------~~~~~~A~~~G~~aA~~I~~~l~g~~ 455 (457)
T PRK11749 400 LNRWGTIIADDETGRT-SLPGVFAGGDIVTG--------AATVVWAVGDGKDAAEAIHEYLEGAA 455 (457)
T ss_pred CCCCCCEEeCCCCCcc-CCCCEEEeCCcCCC--------chHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88899999998 7777 89999999999964 67899999999999999999998754
No 54
>PRK12831 putative oxidoreductase; Provisional
Probab=99.95 E-value=3.8e-26 Score=238.61 Aligned_cols=288 Identities=17% Similarity=0.095 Sum_probs=183.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEE
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (513)
...++|+||||||||++||.+|+++ +++|+|+|+.+...... .+.......+.+++.....+++++.|++++.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~------G~~V~v~e~~~~~GG~l-~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~ 210 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM------GYDVTIFEALHEPGGVL-VYGIPEFRLPKETVVKKEIENIKKLGVKIET 210 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCCCCee-eecCCCccCCccHHHHHHHHHHHHcCCEEEc
Confidence 4568999999999999999999995 45999999876432111 0111111122223555556677788999988
Q ss_pred EeEEEEeCCCCcCcCCCceeeccceEecCCc-eEEEecEEEEeCCC-CCCCCCCCCccccCCCCCCHHHHHHHHHHH---
Q 010331 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGA-EPKLDVVPGAAEFAFPFSTLEDACRVDRKL--- 231 (513)
Q Consensus 157 ~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g-~~i~yD~LVlAtGs-~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l--- 231 (513)
+..... .+.+++. ..+.||+||||||+ .++.+++||.+.. .+.+..++.......
T Consensus 211 ~~~v~~------------------~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~--gV~~~~~~l~~~~~~~~~ 270 (464)
T PRK12831 211 NVVVGK------------------TVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLN--GVFSANEFLTRVNLMKAY 270 (464)
T ss_pred CCEECC------------------cCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCc--CcEEHHHHHHHHHhcccc
Confidence 764321 1223332 24579999999998 6888899996421 122222322211110
Q ss_pred --------HHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEec
Q 010331 232 --------SELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 291 (513)
Q Consensus 232 --------~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 291 (513)
...++.++ ..+...+ .|+++.+... ..++.... . .+.+++.||++++++.+.++..
T Consensus 271 ~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~--~~m~a~~~-e-~~~a~~eGV~i~~~~~~~~i~~ 346 (464)
T PRK12831 271 KPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE--EELPARVE-E-VHHAKEEGVIFDLLTNPVEILG 346 (464)
T ss_pred cccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc--ccCCCCHH-H-HHHHHHcCCEEEecccceEEEe
Confidence 00112211 2233333 4899887543 12222221 1 2345678999999999999865
Q ss_pred cccccccccCCCcccccccccccCCCceEE---Eecccc-c--------CCcceEEeeceEEEecCCCCCCCCCCCCCCc
Q 010331 292 VGEFEASVKQPESGAIPNIAADKNSDKYIL---ELQPAI-K--------GLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359 (513)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v---~~~~~~-~--------~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~ 359 (513)
++... + .++.+ ++...+ . .++..++++|.||+++|+.|++.++..
T Consensus 347 ~~~g~-------v------------~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~---- 403 (464)
T PRK12831 347 DENGW-------V------------KGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISST---- 403 (464)
T ss_pred cCCCe-------E------------EEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcc----
Confidence 32100 0 11111 111000 0 113347999999999999999876653
Q ss_pred cCCCccCCCCCeEeCCC-ccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCC
Q 010331 360 LHDLPLNARGQAETDET-LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 427 (513)
Q Consensus 360 ~~~~~~~~~G~i~Vd~~-l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~ 427 (513)
..+++++++|+|.||++ +++ +.|+|||+|||+.. +.++..|+.+|+.+|.+|...+.++
T Consensus 404 ~~gl~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g--------~~~v~~Ai~~G~~AA~~I~~~L~~~ 463 (464)
T PRK12831 404 TKGLKINKRGCIVADEETGLT-SKEGVFAGGDAVTG--------AATVILAMGAGKKAAKAIDEYLSKK 463 (464)
T ss_pred cCCceECCCCcEEECCCCCcc-CCCCEEEeCCCCCC--------chHHHHHHHHHHHHHHHHHHHhcCC
Confidence 13677888899999987 888 89999999999875 6788999999999999999988764
No 55
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.7e-26 Score=224.33 Aligned_cols=282 Identities=20% Similarity=0.196 Sum_probs=198.7
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCe-EEEEeCCCCc---ccCCchhhhh--hccccCCcchHhHHHHhcCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQSERF---VFKPMLYELL--SGEVDAWEIAPRFADLLANTG 151 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~-V~lIe~~~~~---~~~p~~~~~~--~g~~~~~~~~~~~~~~~~~~~ 151 (513)
+.+||+|||||||||+||.++++. +++ ++|+|+...- ...+....++ .+.....++...+.++....+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~------~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~ 75 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA------GLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFG 75 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc------CCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcC
Confidence 358999999999999999999994 557 6666664322 1222111111 122344567778888888899
Q ss_pred eEEEEEeEEEEeCCC-CcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCcccc----CCCCCCHHHHHH
Q 010331 152 VQFFKDRVKLLCPSD-HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEF----AFPFSTLEDACR 226 (513)
Q Consensus 152 v~~~~~~V~~id~~~-~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~----~~~~~~~~~a~~ 226 (513)
+++....|..++... . +.|.+++++ +++++||||||+.++.+.+||..++ .++|.. .|. .
T Consensus 76 ~~~~~~~v~~v~~~~~~------------F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~-cdg-~ 140 (305)
T COG0492 76 VEIVEDEVEKVELEGGP------------FKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCAT-CDG-F 140 (305)
T ss_pred eEEEEEEEEEEeecCce------------EEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeee-cCc-c
Confidence 999999999998776 3 368888886 9999999999999999999874432 111211 122 1
Q ss_pred HHHH-H--HHHHhhhH---HHHHhcC-cEEEEeccCeecCCCChhHHHHHHHHHHhC-CcEEEcCceeeEEecccccccc
Q 010331 227 VDRK-L--SELERRNF---ERLEEKG-IVQAINVETTICPTGTPGNREAALKVLSAR-KVQLVLGYFVRCIRRVGEFEAS 298 (513)
Q Consensus 227 l~~~-l--~~~~~~~v---~~l~~~~-~vtli~~~~~ll~~~~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~~~~ 298 (513)
++.. + .......+ -.|...+ +|+++++.+.+.+ .+.+.+.+.++ +|++++++.+.++.+++ +
T Consensus 141 ~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~-v--- 210 (305)
T COG0492 141 FKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------EEILVERLKKNVKIEVLTNTVVKEILGDD-V--- 210 (305)
T ss_pred ccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------CHHHHHHHHhcCCeEEEeCCceeEEecCc-c---
Confidence 1111 0 00001111 2223333 4999999887644 24455666655 99999999999999864 2
Q ss_pred ccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCcc
Q 010331 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 378 (513)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~ 378 (513)
..+.++- .+ +...++++|.++.++|..|+++++... +. ++++|+|.||+.++
T Consensus 211 ------------------~~v~l~~--~~--~~~~~~~~~gvf~~iG~~p~~~~~~~~-----~~-~~~~g~I~v~~~~~ 262 (305)
T COG0492 211 ------------------EGVVLKN--VK--GEEKELPVDGVFIAIGHLPNTELLKGL-----GV-LDENGYIVVDEEME 262 (305)
T ss_pred ------------------ceEEEEe--cC--CceEEEEeceEEEecCCCCchHHHhhc-----cc-cCCCCcEEcCCCcc
Confidence 3444442 11 245689999999999999999888753 23 78999999999999
Q ss_pred ccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 379 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 379 ~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
| +.|+|||+|||+..+ .+++..|..+|-.+|.++.+.+..
T Consensus 263 T-svpGifAaGDv~~~~-------~rqi~ta~~~G~~Aa~~a~~~l~~ 302 (305)
T COG0492 263 T-SVPGIFAAGDVADKN-------GRQIATAAGDGAIAALSAERYLES 302 (305)
T ss_pred c-CCCCEEEeEeeccCc-------ccEEeehhhhHHHHHHHHHHHhhh
Confidence 8 999999999999873 347889999999999998887654
No 56
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.94 E-value=5e-26 Score=217.35 Aligned_cols=290 Identities=19% Similarity=0.261 Sum_probs=212.4
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc----------ccCCchhh-----------hhhccccC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF----------VFKPMLYE-----------LLSGEVDA 136 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~----------~~~p~~~~-----------~~~g~~~~ 136 (513)
..+||+||||||+|..||.+.+++| ++.+.||++... +.+.+++. .....++.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlG------lkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~v 111 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLG------LKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDV 111 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhc------ceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccc
Confidence 3589999999999999999999965 499999997621 11111110 00001111
Q ss_pred ------------------CcchHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCc--eEEEecEEE
Q 010331 137 ------------------WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLV 196 (513)
Q Consensus 137 ------------------~~~~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g--~~i~yD~LV 196 (513)
+++...+...+++.+|.++.+.-.-++|.+- .+...|| ..+...++|
T Consensus 112 s~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V-------------~v~k~dg~~~ii~aKnIi 178 (506)
T KOG1335|consen 112 SSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKV-------------SVKKIDGEDQIIKAKNII 178 (506)
T ss_pred cceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceE-------------EEeccCCCceEEeeeeEE
Confidence 1233445666778899999998887877653 2444454 478999999
Q ss_pred EeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHH---HhhhH-----HHHHhc-CcEEEEeccCeecCCCChhHHH
Q 010331 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSEL---ERRNF-----ERLEEK-GIVQAINVETTICPTGTPGNRE 267 (513)
Q Consensus 197 lAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~---~~~~v-----~~l~~~-~~vtli~~~~~ll~~~~~~~~~ 267 (513)
|||||.- .++||..-..-.+-+.+.|..+....+.+ ....+ .-+... ..||+++..+.+.+.++.++++
T Consensus 179 iATGSeV--~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk 256 (506)
T KOG1335|consen 179 IATGSEV--TPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISK 256 (506)
T ss_pred EEeCCcc--CCCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHH
Confidence 9999963 24567532112223334455444432211 11111 222222 3499999999999999999999
Q ss_pred HHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCC
Q 010331 268 AALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 347 (513)
Q Consensus 268 ~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~ 347 (513)
..++.|+++|+++++++++..++.+++ +.+.+++.+.+++ ..++++||.+++++|.+
T Consensus 257 ~~qr~L~kQgikF~l~tkv~~a~~~~d----------------------g~v~i~ve~ak~~-k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 257 AFQRVLQKQGIKFKLGTKVTSATRNGD----------------------GPVEIEVENAKTG-KKETLECDVLLVSIGRR 313 (506)
T ss_pred HHHHHHHhcCceeEeccEEEEeeccCC----------------------CceEEEEEecCCC-ceeEEEeeEEEEEccCc
Confidence 999999999999999999999988764 4677877776666 57889999999999999
Q ss_pred CCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010331 348 PLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 423 (513)
Q Consensus 348 p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~ 423 (513)
|-++-|..+ ..|++.|.+|+|.||..+++ .+|+||+||||... |++|+.|..||-.+.+.|...
T Consensus 314 P~t~GLgle---~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~~g--------pMLAhkAeeegI~~VE~i~g~ 377 (506)
T KOG1335|consen 314 PFTEGLGLE---KIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVTLG--------PMLAHKAEEEGIAAVEGIAGG 377 (506)
T ss_pred ccccCCChh---hcccccccccceeccccccc-cCCceEEecccCCc--------chhhhhhhhhchhheeeeccc
Confidence 998776554 46899999999999999999 89999999999987 899999999999999888764
No 57
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.94 E-value=2.5e-25 Score=225.52 Aligned_cols=293 Identities=19% Similarity=0.161 Sum_probs=180.7
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|+|||||++|+++|..|++. +++|++||+.+........ .......+.+.+......+ .+.+++++.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~l-~~~~i~~~~~ 88 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL------GYEVHVYDKLPEPGGLMLF-GIPEFRIPIERVREGVKEL-EEAGVVFHTR 88 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC------CCcEEEEeCCCCCCceeee-cCcccccCHHHHHHHHHHH-HhCCeEEecC
Confidence 357999999999999999999984 5599999998764321110 0111111222233334444 4458999877
Q ss_pred eEE-EEeC---CCCcCcCCCceeeccceEecCCceEEEecEEEEeCCC-CCCCCCCCCccccCCCCCCH-HHHHHHHHHH
Q 010331 158 RVK-LLCP---SDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA-EPKLDVVPGAAEFAFPFSTL-EDACRVDRKL 231 (513)
Q Consensus 158 ~V~-~id~---~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs-~~~~~~ipG~~~~~~~~~~~-~~a~~l~~~l 231 (513)
+.. .++. .....+.. ..+..++ ..++||+||||||+ .+..|.+||.+.. .+.+. +.+..+....
T Consensus 89 ~~v~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~d~lviAtGs~~~~~~~ipg~~~~--~v~~~~~~~~~~~~~~ 158 (352)
T PRK12770 89 TKVCCGEPLHEEEGDEFVE-------RIVSLEE-LVKKYDAVLIATGTWKSRKLGIPGEDLP--GVYSALEYLFRIRAAK 158 (352)
T ss_pred cEEeecccccccccccccc-------ccCCHHH-HHhhCCEEEEEeCCCCCCcCCCCCcccc--CceeHHHHHHHhhhcc
Confidence 443 3322 00000000 0112222 24789999999999 4778889986431 12222 1211111100
Q ss_pred ------HH-----HHhhhH-----------HHHHhcC-c-EEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceee
Q 010331 232 ------SE-----LERRNF-----------ERLEEKG-I-VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 287 (513)
Q Consensus 232 ------~~-----~~~~~v-----------~~l~~~~-~-vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~ 287 (513)
.. .++.++ ..+...+ . |+++++...... + ......+.|+++||++++++.+.
T Consensus 159 ~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~--~--~~~~~~~~l~~~gi~i~~~~~v~ 234 (352)
T PRK12770 159 LGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA--P--AGKYEIERLIARGVEFLELVTPV 234 (352)
T ss_pred ccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC--C--CCHHHHHHHHHcCCEEeeccCce
Confidence 00 011111 3333333 3 899887543211 1 11344566899999999999999
Q ss_pred EEeccccccccccCCCcccccccccccCCCceEEE---ecc---------cccCCcceEEeeceEEEecCCCCCCCCCCC
Q 010331 288 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE---LQP---------AIKGLESQIFEADLVLWTVGSKPLLPHVEP 355 (513)
Q Consensus 288 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~~---------~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~ 355 (513)
++..++.+ ..+.+. +.+ .....+++++++|.||+++|.+|++.+...
T Consensus 235 ~i~~~~~~---------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~ 293 (352)
T PRK12770 235 RIIGEGRV---------------------EGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKE 293 (352)
T ss_pred eeecCCcE---------------------eEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhc
Confidence 88764311 111111 000 001124578999999999999999766543
Q ss_pred CCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 356 ~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
..+++++++|+|.||+++++ +.|+|||+|||+.. +..+..|++||+.+|.||.+.|..
T Consensus 294 ----~~g~~~~~~g~i~vd~~~~t-~~~~vyaiGD~~~~--------~~~~~~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 294 ----CLGIELNRKGEIVVDEKHMT-SREGVFAAGDVVTG--------PSKIGKAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred ----ccCceecCCCcEeeCCCccc-CCCCEEEEcccccC--------cchHHHHHHHHHHHHHHHHHHHhc
Confidence 13677888899999999998 89999999999886 668889999999999999998864
No 58
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.94 E-value=2.5e-25 Score=245.28 Aligned_cols=304 Identities=16% Similarity=0.114 Sum_probs=186.0
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|+||||||||++||..|++. +++|+|+|+++...... ....+....+.+......+++...|++++.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~------G~~VTV~Ek~~~lGG~l--~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g 607 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA------GHPVTVFEKKEKPGGVV--KNIIPEFRISAESIQKDIELVKFHGVEFKYG 607 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC------CCeEEEEecccccCcee--eecccccCCCHHHHHHHHHHHHhcCcEEEEe
Confidence 457999999999999999999984 55999999987543221 1112221222333344445666789999877
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCC-CCCCCCCccccCCCCCCHHHHHHHHHH---HHH
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRK---LSE 233 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~l~~~---l~~ 233 (513)
.... +.+++.....||+||||||+.+ ..+.+||..+.. +...+....+... ...
T Consensus 608 ~~~d--------------------~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v--~~avefL~~~~~~~~~~~~ 665 (1012)
T TIGR03315 608 CSPD--------------------LTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERV--LKSLEFLRAFKEGPTINPL 665 (1012)
T ss_pred cccc--------------------eEhhhhhcccccEEEECCCCCCCCCCCcCCCCcce--eeHHHHHHHhhcccccccc
Confidence 3111 1222333457999999999974 455677743322 2222222222111 111
Q ss_pred HHhhhH-----------HHHHh-cC--cEEEEeccC-eecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEecccccccc
Q 010331 234 LERRNF-----------ERLEE-KG--IVQAINVET-TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 298 (513)
Q Consensus 234 ~~~~~v-----------~~l~~-~~--~vtli~~~~-~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~ 298 (513)
.++.++ ..+.. .+ .|+++.+.. ..++..++. +.+.+ +.||+++.+..+.++.. +.+
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eE----l~~al-eeGVe~~~~~~p~~I~~-g~l--- 736 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREE----LEEAL-EDGVDFKELLSPESFED-GTL--- 736 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHH----HHHHH-HcCCEEEeCCceEEEEC-CeE---
Confidence 111111 22222 23 599988765 334443332 33333 57999999998888862 211
Q ss_pred ccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCC-c
Q 010331 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET-L 377 (513)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~-l 377 (513)
+.......+.+.++....+. . ++..+++||.||+|+|..|+++++.. .+++++.+|+|.||++ +
T Consensus 737 ------~v~~~~l~~~d~sGr~~~v~---~-Gee~~I~aD~VIvAiG~~Pnt~lle~-----~GL~ld~~G~I~VD~~~~ 801 (1012)
T TIGR03315 737 ------TCEVMKLGEPDASGRRRPVG---T-GETVDLPADTVIAAVGEQVDTDLLQK-----NGIPLDEYGWPVVNQATG 801 (1012)
T ss_pred ------EEEEEEeecccCCCceeeec---C-CCeEEEEeCEEEEecCCcCChHHHHh-----cCcccCCCCCEEeCCCCC
Confidence 00000000000011111110 1 24568999999999999999888753 3678888999999975 7
Q ss_pred cccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCCC------------CCcccCCceeEEEec
Q 010331 378 CVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL------------LPFRFQNLGEMMILG 444 (513)
Q Consensus 378 ~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~~------------~~f~~~~~g~~~~lG 444 (513)
++ +.|+|||+|||+.. |.++..|+.||+.+|.||.+.....+. .+|.|...|.+...+
T Consensus 802 ~T-s~pgVFAaGD~a~G--------P~tVv~AIaqGr~AA~nIl~~~~~~~~~~~~~~~~~~~~~~~~Y~~kG~la~~~ 871 (1012)
T TIGR03315 802 ET-NITNVFVIGDANRG--------PATIVEAIADGRKAANAILSREGLNSDVDKVFPINEEVRLAEVYQKKGILVIDD 871 (1012)
T ss_pred cc-CCCCEEEEeCcCCC--------ccHHHHHHHHHHHHHHHHhccccCCcccccccccccccccchhhccCcceeccC
Confidence 77 89999999999876 778999999999999999875433221 255677777766444
No 59
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.94 E-value=2.6e-25 Score=246.02 Aligned_cols=286 Identities=16% Similarity=0.091 Sum_probs=183.3
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|+||||||||++||.+|++. +++|+|+|+.+..... +...++....+.++.....+.+++.|++|+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~------G~~V~v~e~~~~~GG~--l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~ 501 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR------GYDVTVFEALHEIGGV--LKYGIPEFRLPKKIVDVEIENLKKLGVKFETD 501 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCCCCCCe--eeecCCCCCCCHHHHHHHHHHHHHCCCEEECC
Confidence 467999999999999999999995 5599999986533211 11111111122344444456677789999887
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCC-CCCCCCCCCccccCCCCCCHHHHHHHHHHHH----
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA-EPKLDVVPGAAEFAFPFSTLEDACRVDRKLS---- 232 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs-~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~---- 232 (513)
..... .+.+++.....||+||||||+ .++.+++||... ..+.+..++........
T Consensus 502 ~~v~~------------------~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~--~gV~~~~~~l~~~~~~~~~~~ 561 (752)
T PRK12778 502 VIVGK------------------TITIEELEEEGFKGIFIASGAGLPNFMNIPGENS--NGVMSSNEYLTRVNLMDAASP 561 (752)
T ss_pred CEECC------------------cCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCC--CCcEEHHHHHHHHhhcccccc
Confidence 54321 244444445679999999999 588888998532 22333333322111100
Q ss_pred -------HHHhhhH-----------HHHHhc-Cc-EEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEecc
Q 010331 233 -------ELERRNF-----------ERLEEK-GI-VQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 292 (513)
Q Consensus 233 -------~~~~~~v-----------~~l~~~-~~-vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~ 292 (513)
..++.++ ..+... .. |+++.+.... .++....+ .+.+++.||++++++.+.++..+
T Consensus 562 ~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~--~~~~~~~e--~~~~~~~GV~i~~~~~~~~i~~~ 637 (752)
T PRK12778 562 DSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEE--EMPARLEE--VKHAKEEGIEFLTLHNPIEYLAD 637 (752)
T ss_pred cccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcc--cCCCCHHH--HHHHHHcCCEEEecCcceEEEEC
Confidence 0112221 222333 23 9998876531 22222211 23567889999999999888653
Q ss_pred ccccccccCCCcccccccccccCCCceEEE---ecc-cc--------cCCcceEEeeceEEEecCCCCCCCCCCCCCCcc
Q 010331 293 GEFEASVKQPESGAIPNIAADKNSDKYILE---LQP-AI--------KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRL 360 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~~-~~--------~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~ 360 (513)
+... + .++.+. +.. .. ..++..+++||.||+|+|+.|++.++.. .
T Consensus 638 ~~g~-------v------------~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~----~ 694 (752)
T PRK12778 638 EKGW-------V------------KQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSS----I 694 (752)
T ss_pred CCCE-------E------------EEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCcccccc----c
Confidence 3110 0 111111 000 00 0113457999999999999999765543 2
Q ss_pred CCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCC
Q 010331 361 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 427 (513)
Q Consensus 361 ~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~ 427 (513)
.+++++++|+|.||+++++ +.|+|||+|||+.. +.++..|+.||+.+|.+|.+.+.++
T Consensus 695 ~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g--------~~~vv~Av~~G~~AA~~I~~~L~~~ 752 (752)
T PRK12778 695 PGLELNRKGTIVVDEEMQS-SIPGIYAGGDIVRG--------GATVILAMGDGKRAAAAIDEYLSSK 752 (752)
T ss_pred cCceECCCCCEEeCCCCCC-CCCCEEEeCCccCC--------cHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3677888999999999987 89999999999975 6789999999999999999988753
No 60
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.93 E-value=2.5e-25 Score=241.49 Aligned_cols=288 Identities=19% Similarity=0.107 Sum_probs=181.3
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|+|||||+||+++|..|++. +++|+|+|+++..... +...+.....++++.....+.+.+.|+++..+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~--l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGM--MRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCce--eeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 457999999999999999999984 4599999998754211 11111111223344444455666789998877
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCC-CCCCCCCccccCCCCCCHHHHHHH-H--HHHHH
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRV-D--RKLSE 233 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~l-~--~~l~~ 233 (513)
.+..++ +.+++. ...||+||||||+.+ ..+++||.+. ....+..+...- . .....
T Consensus 264 ~~v~~d------------------v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~--~gv~~~~~~l~~~~~~~~~~~ 322 (652)
T PRK12814 264 TVFGRD------------------ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEEL--PGVISGIDFLRNVALGTALHP 322 (652)
T ss_pred CcccCc------------------cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCc--CCcEeHHHHHHHhhcCCcccC
Confidence 654331 222222 235999999999985 4678888532 111111111110 0 00111
Q ss_pred HHhhhH-----------HHHHhcC--cEEEEeccCe-ecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccc
Q 010331 234 LERRNF-----------ERLEEKG--IVQAINVETT-ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASV 299 (513)
Q Consensus 234 ~~~~~v-----------~~l~~~~--~vtli~~~~~-ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~ 299 (513)
.++.++ ..+...+ .|+++.+... .++..+. .+.+. .+.||++++++.+.++..+++..
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~----ei~~a-~~eGV~i~~~~~~~~i~~~~~~~--- 394 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRA----EIEEA-LAEGVSLRELAAPVSIERSEGGL--- 394 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH----HHHHH-HHcCCcEEeccCcEEEEecCCeE---
Confidence 111111 2223333 4899887653 3443332 23333 35799999999998887643110
Q ss_pred cCCCcccccccccccCCCceEEEecc-cc--------cCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCC
Q 010331 300 KQPESGAIPNIAADKNSDKYILELQP-AI--------KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQ 370 (513)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~v~v~~~~-~~--------~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~ 370 (513)
.+ ..+.++... .. ..++..++++|.||+++|+.|+++++.. .+++++.+|+
T Consensus 395 ---~v------------~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~-----~gl~~~~~G~ 454 (652)
T PRK12814 395 ---EL------------TAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEA-----AGIGTSRNGT 454 (652)
T ss_pred ---EE------------EEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccc-----cCccccCCCc
Confidence 00 000111000 00 0113457999999999999999887753 3677888899
Q ss_pred eEeCC-CccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCCCCC
Q 010331 371 AETDE-TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 431 (513)
Q Consensus 371 i~Vd~-~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~~~~ 431 (513)
|.||+ ++++ +.|+|||+|||+.. +.++..|++||+.+|.||...+.++++.+
T Consensus 455 I~vd~~~~~T-s~pgVfA~GDv~~g--------~~~v~~Ai~~G~~AA~~I~~~L~g~~~~~ 507 (652)
T PRK12814 455 VKVDPETLQT-SVAGVFAGGDCVTG--------ADIAINAVEQGKRAAHAIDLFLNGKPVTA 507 (652)
T ss_pred EeeCCCCCcC-CCCCEEEcCCcCCC--------chHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99997 5666 89999999999876 67899999999999999999999877543
No 61
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.93 E-value=1.1e-24 Score=242.73 Aligned_cols=296 Identities=16% Similarity=0.056 Sum_probs=184.8
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|+|||||||||+||.+|++. +++|||+|+.+..... +..-++....++++.....+.++..|++|+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~------G~~VtVfE~~~~~GG~--l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n 376 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE------GFPVTVFEAFHDLGGV--LRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKN 376 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC------CCeEEEEeeCCCCCce--EEccCCCCcChHHHHHHHHHHHHhhcCeEEEe
Confidence 468999999999999999999995 5599999998743321 11112222234456666667788889999988
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCC-CCCCCCCCCccccCCCCCCHHHHHHHHHHHH----
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA-EPKLDVVPGAAEFAFPFSTLEDACRVDRKLS---- 232 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs-~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~---- 232 (513)
...+. .+++++.....||+||||||+ .++.+++||.+ ..++.+..++....+...
T Consensus 377 ~~vG~------------------dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~d--l~GV~~a~dfL~~~~~~~~~~~ 436 (944)
T PRK12779 377 FVVGK------------------TATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEH--LLGVMSANEFLTRVNLMRGLDD 436 (944)
T ss_pred EEecc------------------EEeHHHhccccCCEEEEeCCCCCCCcCCCCCCc--CcCcEEHHHHHHHHHhhccccc
Confidence 65433 356666655689999999999 48888999942 122333333322111100
Q ss_pred ---------HHHhhhH-----------HHHHhc-CcEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEec
Q 010331 233 ---------ELERRNF-----------ERLEEK-GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 291 (513)
Q Consensus 233 ---------~~~~~~v-----------~~l~~~-~~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 291 (513)
..++.+| ..+... ..|+++.+...- .++.. .+.+.. ..+.||+++++..+.++..
T Consensus 437 ~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~--~mpa~-~~e~~~-a~eeGV~~~~~~~p~~i~~ 512 (944)
T PRK12779 437 DYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKS--EMPAR-VEELHH-ALEEGINLAVLRAPREFIG 512 (944)
T ss_pred cccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcc--ccccc-HHHHHH-HHHCCCEEEeCcceEEEEe
Confidence 0011221 222222 358888776431 22221 122222 3467999999999999875
Q ss_pred cccccccccCCCcccccccccccCCCc-eEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCC
Q 010331 292 VGEFEASVKQPESGAIPNIAADKNSDK-YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQ 370 (513)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~ 370 (513)
++... ....+........+.+.++ .... .. ++..+++||.||+|+|+.|++.+... ..+++++++|.
T Consensus 513 d~~~~---~V~~v~~~~~~l~~~d~~Gr~~~~----~~-G~e~~i~aD~VI~AiG~~p~~~l~~~----~~gle~~~~G~ 580 (944)
T PRK12779 513 DDHTH---FVTHALLDVNELGEPDKSGRRSPK----PT-GEIERVPVDLVIMALGNTANPIMKDA----EPGLKTNKWGT 580 (944)
T ss_pred cCCCC---EEEEEEEEEEEeccccCcCceeee----cC-CceEEEECCEEEEcCCcCCChhhhhc----ccCceECCCCC
Confidence 42110 0000000000000000001 0000 01 24467999999999999999543222 23678888999
Q ss_pred eEeCC-CccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 371 AETDE-TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 371 i~Vd~-~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
|.||+ +++| +.|+|||+|||+.. +.++..|+.+|+.+|.+|...+.-
T Consensus 581 I~vd~~~~~T-s~pgVFAaGD~~~G--------~~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 581 IEVEKGSQRT-SIKGVYSGGDAARG--------GSTAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred EEECCCCCcc-CCCCEEEEEcCCCC--------hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99996 5677 89999999999976 678999999999999999987753
No 62
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.93 E-value=1.3e-24 Score=228.30 Aligned_cols=289 Identities=18% Similarity=0.157 Sum_probs=179.2
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|+|||||+||+++|..|++. +++|+|||+.+..... +...+.....+.++.....+++.+.|++++.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~--l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~ 213 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGL--LRYGIPDFKLEKEVIDRRIELMEAEGIEFRTN 213 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCce--eeecCCcccCCHHHHHHHHHHHHhCCcEEEeC
Confidence 457999999999999999999984 5599999998754211 11011111122334445556677889999887
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCC-CCCCCCCCccccCCCCCCHHHHH-HHHHHHH---
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDAC-RVDRKLS--- 232 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~-~~~~~ipG~~~~~~~~~~~~~a~-~l~~~l~--- 232 (513)
.....+.. . +.....||+||+|||+. ++.+.+||... ..+....+.. .......
T Consensus 214 ~~v~~~~~------------------~-~~~~~~~d~vvlAtGa~~~~~l~ipG~~~--~gV~~~~~~l~~~~~~~~~~~ 272 (471)
T PRK12810 214 VEVGKDIT------------------A-EELLAEYDAVFLGTGAYKPRDLGIPGRDL--DGVHFAMDFLIQNTRRVLGDE 272 (471)
T ss_pred CEECCcCC------------------H-HHHHhhCCEEEEecCCCCCCcCCCCCccC--CCcEEHHHHHHHHHhhhcccc
Confidence 65433211 1 11134799999999997 67788998532 1111111111 1000000
Q ss_pred -------HHHhhhH-----------HHHHhcC--cEEEEeccCeecCCCCh-------h-HHHHHHHHHHhCCcEEEcCc
Q 010331 233 -------ELERRNF-----------ERLEEKG--IVQAINVETTICPTGTP-------G-NREAALKVLSARKVQLVLGY 284 (513)
Q Consensus 233 -------~~~~~~v-----------~~l~~~~--~vtli~~~~~ll~~~~~-------~-~~~~~~~~l~~~gV~v~~~~ 284 (513)
..++.++ ..+...+ .|++++.... +.... . ......+.+++.||++++++
T Consensus 273 ~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~ 350 (471)
T PRK12810 273 TEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPM--PPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNV 350 (471)
T ss_pred ccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCC--CccccccccCCcccchHHHHHHHHHcCCeEEecc
Confidence 0011111 1222232 4775544321 11111 0 01113456778899999999
Q ss_pred eeeEEeccccccccccCCCcccccccccccCCCceEE---Eeccc---ccCCcceEEeeceEEEecCCCCCCC-CCCCCC
Q 010331 285 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYIL---ELQPA---IKGLESQIFEADLVLWTVGSKPLLP-HVEPPN 357 (513)
Q Consensus 285 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v---~~~~~---~~~~~g~~i~aD~vi~a~G~~p~~~-~l~~~~ 357 (513)
.+.++..++... .++.+ .+... ...++.+++++|.||+++|.+|+.. ++.
T Consensus 351 ~~~~i~~~~g~v--------------------~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~--- 407 (471)
T PRK12810 351 QTKEFEGENGKV--------------------TGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLA--- 407 (471)
T ss_pred CceEEEccCCEE--------------------EEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhcc---
Confidence 999997532100 11111 11000 0012446899999999999999853 554
Q ss_pred CccCCCccCCCCCeEeC-CCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCCCCC
Q 010331 358 NRLHDLPLNARGQAETD-ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 431 (513)
Q Consensus 358 ~~~~~~~~~~~G~i~Vd-~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~~~~ 431 (513)
..+++++++|++.|| +++++ +.|+|||+|||+.. +.++..|+.||+.+|.+|...+.++++.|
T Consensus 408 --~~gl~~~~~g~i~vd~~~~~T-s~~gVfa~GD~~~g--------~~~~~~Av~~G~~AA~~i~~~L~g~~~~~ 471 (471)
T PRK12810 408 --QFGVELDERGRVAAPDNAYQT-SNPKVFAAGDMRRG--------QSLVVWAIAEGRQAARAIDAYLMGSTALP 471 (471)
T ss_pred --ccCcccCCCCCEEeCCCcccC-CCCCEEEccccCCC--------chhHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 346778889999999 78997 89999999999975 56788999999999999999998876543
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.92 E-value=1.1e-23 Score=236.71 Aligned_cols=286 Identities=18% Similarity=0.113 Sum_probs=181.0
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|+|||||||||+||.+|++. +++|+|+|+.+..... +..-++....+.++.....+.+.+.|++|..+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~------G~~VtV~E~~~~~GG~--l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~ 500 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY------GVDVTVYEALHVVGGV--LQYGIPSFRLPRDIIDREVQRLVDIGVKIETN 500 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCcce--eeccCCccCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 357999999999999999999995 4599999998744321 11112222234456666777788889999988
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCce-EEEecEEEEeCCCC-CCCCCCCCccccCCCCCCHHHHHHHHHHH----
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGL-IVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKL---- 231 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~-~i~yD~LVlAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~l---- 231 (513)
.+.+.+ +..++.. ...||+||||||+. ++.+++||... ..+.+..+.....+..
T Consensus 501 ~~vg~~------------------~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l--~gV~~a~~fL~~~~~~~~~~ 560 (1006)
T PRK12775 501 KVIGKT------------------FTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFA--GQVYSANEFLTRVNLMGGDK 560 (1006)
T ss_pred CccCCc------------------cCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCC--CCcEEHHHHHHHHHhcCccc
Confidence 654321 1111111 24699999999995 78889999521 1222222222211110
Q ss_pred --------HHHHhhhH-----------HHHHhcC--cEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEe
Q 010331 232 --------SELERRNF-----------ERLEEKG--IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 290 (513)
Q Consensus 232 --------~~~~~~~v-----------~~l~~~~--~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~ 290 (513)
...++.+| ..+...+ .|+++.+.... ..+... .-.+.+++.||++++++.+.++.
T Consensus 561 ~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~--em~a~~--~e~~~a~eeGI~~~~~~~p~~i~ 636 (1006)
T PRK12775 561 FPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEA--EAPARI--EEIRHAKEEGIDFFFLHSPVEIY 636 (1006)
T ss_pred cccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcc--cCCCCH--HHHHHHHhCCCEEEecCCcEEEE
Confidence 00111111 1222222 37777654321 122111 11245778999999999999986
Q ss_pred ccccccccccCCCcccccccccccCCCceEEE---ecccc--------cCCcceEEeeceEEEecCCCCCCCCCCCCCCc
Q 010331 291 RVGEFEASVKQPESGAIPNIAADKNSDKYILE---LQPAI--------KGLESQIFEADLVLWTVGSKPLLPHVEPPNNR 359 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~~~~--------~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~ 359 (513)
.+++.. + .++.+. +...+ ..++..++++|.||+++|+.|++.++..
T Consensus 637 ~~~~G~-------v------------~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~---- 693 (1006)
T PRK12775 637 VDAEGS-------V------------RGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQS---- 693 (1006)
T ss_pred eCCCCe-------E------------EEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhc----
Confidence 532110 0 111111 10000 0113357999999999999999766543
Q ss_pred cCCCccCCCCCeEeCC-----CccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCC
Q 010331 360 LHDLPLNARGQAETDE-----TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 427 (513)
Q Consensus 360 ~~~~~~~~~G~i~Vd~-----~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~ 427 (513)
..++.++.+|.|.||+ ++++ +.|+|||+|||+.. +.++..|+.+|+.+|.+|...+.+.
T Consensus 694 ~~gl~l~~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G--------~~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 694 TPGLALNKWGNIAADDGKLESTQST-NLPGVFAGGDIVTG--------GATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred cCCcccCCCCcEEeCCCccccCcCC-CCCCEEEecCcCCC--------ccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2357788899999996 6777 89999999999976 6789999999999999999998764
No 64
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=1.3e-23 Score=198.44 Aligned_cols=280 Identities=18% Similarity=0.234 Sum_probs=198.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC----------CcccCCchhhh-----h----hccccC-
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE----------RFVFKPMLYEL-----L----SGEVDA- 136 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~----------~~~~~p~~~~~-----~----~g~~~~- 136 (513)
...+|.+|||||.+|+++|++.+.+ +.++.|+|..- +.+-+-+++.. + ...++.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~------GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~ 91 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASH------GAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPIN 91 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhc------CceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccc
Confidence 4468999999999999999999985 45999999762 11111122110 0 000111
Q ss_pred --------------CcchHh----HHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCce--EEEecEEE
Q 010331 137 --------------WEIAPR----FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL--IVEYDWLV 196 (513)
Q Consensus 137 --------------~~~~~~----~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~--~i~yD~LV 196 (513)
+....+ +...+.+..|+++.++..-+++.+- +|...|+. .+.+.++.
T Consensus 92 ~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v-------------~V~~~d~~~~~Ytak~iL 158 (478)
T KOG0405|consen 92 EEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEV-------------EVEVNDGTKIVYTAKHIL 158 (478)
T ss_pred cccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCce-------------EEEecCCeeEEEecceEE
Confidence 111222 2334455689999998887776553 46666663 37789999
Q ss_pred EeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhcC-cEEEEeccCeecCCCChh
Q 010331 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEKG-IVQAINVETTICPTGTPG 264 (513)
Q Consensus 197 lAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~~-~vtli~~~~~ll~~~~~~ 264 (513)
||||.+|..|+|||. |+.+.- +.+..+.+... +.++ .-+...+ .+.++-+.+.+|..+++.
T Consensus 159 IAtGg~p~~PnIpG~-E~gidS---Dgff~Lee~Pk---r~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~ 231 (478)
T KOG0405|consen 159 IATGGRPIIPNIPGA-ELGIDS---DGFFDLEEQPK---RVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEM 231 (478)
T ss_pred EEeCCccCCCCCCch-hhcccc---ccccchhhcCc---eEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHH
Confidence 999999999999995 333321 22222322221 1111 2222223 378888999999999999
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEec
Q 010331 265 NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 344 (513)
Q Consensus 265 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~ 344 (513)
++..+.+.++.+||++|.++.++++.+..+. ...+.. +.+....+|.++||+
T Consensus 232 i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g----------------------~~~~i~------~~~~i~~vd~llwAi 283 (478)
T KOG0405|consen 232 ISDLVTEHLEGRGINVHKNSSVTKVIKTDDG----------------------LELVIT------SHGTIEDVDTLLWAI 283 (478)
T ss_pred HHHHHHHHhhhcceeecccccceeeeecCCC----------------------ceEEEE------eccccccccEEEEEe
Confidence 9999999999999999999999999886532 112221 145556699999999
Q ss_pred CCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 345 GSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 345 G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
|..||+.-+... ..|+.+|++|.|.||++.++ +.|+||++||++.- ..+...|...|+.++..+.+
T Consensus 284 GR~Pntk~L~le---~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk--------~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 284 GRKPNTKGLNLE---NVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGK--------INLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred cCCCCcccccch---hcceeeCCCCCEEEeccccC-CCCceEEeccccCc--------EecchHHHhhhhhHHHHhhc
Confidence 999999887765 45999999999999999999 99999999999986 45667888889999888766
No 65
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4e-24 Score=190.22 Aligned_cols=276 Identities=15% Similarity=0.159 Sum_probs=190.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC--------------CcccCCchhhhhhccccCCcchHhHH
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE--------------RFVFKPMLYELLSGEVDAWEIAPRFA 144 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~--------------~~~~~p~~~~~~~g~~~~~~~~~~~~ 144 (513)
..+|+|||+|||+.+||.++++ ..++.+|+|--- .....|.+|+-+.| .++...++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaar------aelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G----~~l~d~mr 77 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAAR------AELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITG----PELMDKMR 77 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhh------cccCceEEeeeeccCcCCCceeeeeeccccCCCCCccccc----HHHHHHHH
Confidence 4689999999999999999998 567899998522 11222333333333 37888999
Q ss_pred HHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHH
Q 010331 145 DLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDA 224 (513)
Q Consensus 145 ~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a 224 (513)
++..++|.+++..+|..+|.+.+. +.+.++. +.+.+|.+|+|||+..+...+||.-|..++-+.+..+
T Consensus 78 kqs~r~Gt~i~tEtVskv~~sskp-----------F~l~td~-~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaC 145 (322)
T KOG0404|consen 78 KQSERFGTEIITETVSKVDLSSKP-----------FKLWTDA-RPVTADAVILATGASAKRLHLPGEGEGEFWQRGISAC 145 (322)
T ss_pred HHHHhhcceeeeeehhhccccCCC-----------eEEEecC-CceeeeeEEEecccceeeeecCCCCcchHHhcccchh
Confidence 999999999999999999877653 3566654 4899999999999999988899964443554444332
Q ss_pred HHHHHHHHHHHhhh---H----------HHHHhcC-cEEEEeccCeecCCCChhHHHHH-HHHHHhCCcEEEcCceeeEE
Q 010331 225 CRVDRKLSELERRN---F----------ERLEEKG-IVQAINVETTICPTGTPGNREAA-LKVLSARKVQLVLGYFVRCI 289 (513)
Q Consensus 225 ~~l~~~l~~~~~~~---v----------~~l~~~~-~vtli~~~~~ll~~~~~~~~~~~-~~~l~~~gV~v~~~~~v~~i 289 (513)
.-......-+.... + ..|...+ +|.++++.+++-. +..+ ++.++..+|++++++.+.+.
T Consensus 146 AVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA------s~~Mq~ra~~npnI~v~~nt~~~ea 219 (322)
T KOG0404|consen 146 AVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA------SKIMQQRAEKNPNIEVLYNTVAVEA 219 (322)
T ss_pred hcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH------HHHHHHHHhcCCCeEEEechhhhhh
Confidence 21111111111111 1 2223333 4888888876622 2223 45667789999999998888
Q ss_pred eccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCC
Q 010331 290 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 369 (513)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G 369 (513)
..++... +++.+ ++.+++ +...++.+-+++++|..|++.+++. ++++|++|
T Consensus 220 ~gd~~~l--------------------~~l~i--kn~~tg-e~~dl~v~GlFf~IGH~Pat~~l~g------qve~d~~G 270 (322)
T KOG0404|consen 220 LGDGKLL--------------------NGLRI--KNVKTG-EETDLPVSGLFFAIGHSPATKFLKG------QVELDEDG 270 (322)
T ss_pred ccCcccc--------------------cceEE--EecccC-cccccccceeEEEecCCchhhHhcC------ceeeccCc
Confidence 7764321 33333 333344 6678999999999999999999976 68899999
Q ss_pred CeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHH
Q 010331 370 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGW 418 (513)
Q Consensus 370 ~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ 418 (513)
+|+|-+.-..+++|++||+||++... -+++..|...|-++|-
T Consensus 271 Yi~t~pgts~TsvpG~FAAGDVqD~k-------yRQAvTaAgsGciaal 312 (322)
T KOG0404|consen 271 YIVTRPGTSLTSVPGVFAAGDVQDKK-------YRQAVTAAGSGCIAAL 312 (322)
T ss_pred eEEeccCcccccccceeeccccchHH-------HHHHHhhhccchhhhh
Confidence 99999654444999999999998753 2455555555555543
No 66
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.90 E-value=8.6e-23 Score=214.61 Aligned_cols=305 Identities=17% Similarity=0.138 Sum_probs=176.1
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|+|||||+||+++|..|++. +++|+|+|+.+..... +...+.+.....++.....++++..|++++.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~~~~gG~--l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~ 213 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA------GHTVTVFEREDRCGGL--LMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTN 213 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCCCce--eeccCCCccCCHHHHHHHHHHHHhCCCEEECC
Confidence 347999999999999999999984 5599999998753211 11011111112234444456677789999887
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCC-CCCCCCCCccc-cCCCCCC-HHHHHHHHH--HH-
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAE-FAFPFST-LEDACRVDR--KL- 231 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~-~~~~~ipG~~~-~~~~~~~-~~~a~~l~~--~l- 231 (513)
.....+ +.. +.....||.||+|||+. +..+++||.+. .++.... +.++..... ..
T Consensus 214 ~~v~~~------------------~~~-~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~ 274 (485)
T TIGR01317 214 TEIGVD------------------ISA-DELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFK 274 (485)
T ss_pred CEeCCc------------------cCH-HHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhcccccc
Confidence 543321 111 11235799999999998 78888999532 2221110 011100000 00
Q ss_pred ------HHHHhhhH------------HHHHhcC-cEEEEeccCeecCCC---------Chh--HHHHHHHHHHhCCcEE-
Q 010331 232 ------SELERRNF------------ERLEEKG-IVQAINVETTICPTG---------TPG--NREAALKVLSARKVQL- 280 (513)
Q Consensus 232 ------~~~~~~~v------------~~l~~~~-~vtli~~~~~ll~~~---------~~~--~~~~~~~~l~~~gV~v- 280 (513)
...++.++ ..+.... .|++++..+..+... +.. .....++..+..||.+
T Consensus 275 ~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~ 354 (485)
T TIGR01317 275 DIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPR 354 (485)
T ss_pred ccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccce
Confidence 00111111 1222222 488888765543221 111 1122334444467654
Q ss_pred EcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCC-CCCCCCCCCCCc
Q 010331 281 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK-PLLPHVEPPNNR 359 (513)
Q Consensus 281 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~-p~~~~l~~~~~~ 359 (513)
++++.+.++..++... ...+.+.+........+...... ..++..++++|.||+++|+. |++.++..
T Consensus 355 ~~~~~~~~i~~~~~g~----v~~v~~~~~~~~~~~~Gr~~p~~----~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~---- 422 (485)
T TIGR01317 355 EYSILTKEFIGDDEGK----VTALRTVRVEWKKSQDGKWQFVE----IPGSEEVFEADLVLLAMGFVGPEQILLDD---- 422 (485)
T ss_pred EEecCcEEEEEcCCCe----EEEEEEEEEEeccCCCCCcccee----cCCceEEEECCEEEEccCcCCCccccccc----
Confidence 5677788876532100 00010000000000000000000 01134589999999999996 88777754
Q ss_pred cCCCccCCCCCeEeC-CCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCCCCC
Q 010331 360 LHDLPLNARGQAETD-ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 431 (513)
Q Consensus 360 ~~~~~~~~~G~i~Vd-~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~~~~ 431 (513)
.+++++.+|++.++ +++++ +.|+|||+|||+.. +.++..|+.+|+.+|.+|...+.+.+..|
T Consensus 423 -~gl~~~~~G~i~~~~~~~~T-s~~gVfAaGD~~~g--------~~~~~~Av~~G~~AA~~i~~~L~g~~~~~ 485 (485)
T TIGR01317 423 -FGVKKTRRGNISAGYDDYST-SIPGVFAAGDCRRG--------QSLIVWAINEGRKAAAAVDRYLMGSSVLP 485 (485)
T ss_pred -cCcccCCCCCEEecCCCceE-CCCCEEEeeccCCC--------cHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 36777888999655 67887 89999999999875 66888999999999999999998876544
No 67
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.90 E-value=1e-22 Score=213.22 Aligned_cols=281 Identities=17% Similarity=0.138 Sum_probs=175.2
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|+|||||++|+++|..|++. +++|+|+|+.+...... ..-+.....+.++.....+++++.|++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l--~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~ 211 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLL--TFGIPSFKLDKAVLSRRREIFTAMGIEFHLN 211 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCcee--eecCccccCCHHHHHHHHHHHHHCCCEEECC
Confidence 467999999999999999999984 55999999987542211 1111111123344555567777889998876
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCC-CCCCCCCccccCCCCCCHHHHHHHHH-HHH---
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDR-KLS--- 232 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~l~~-~l~--- 232 (513)
..... .+.+++. ...||.||+|||+.+ ..+++||.... .+.+.-+...... .+.
T Consensus 212 ~~v~~------------------~~~~~~~-~~~~D~vilAtGa~~~~~~~i~g~~~~--gV~~a~~~l~~~~~~~~~~~ 270 (467)
T TIGR01318 212 CEVGR------------------DISLDDL-LEDYDAVFLGVGTYRSMRGGLPGEDAP--GVLQALPFLIANTRQLMGLP 270 (467)
T ss_pred CEeCC------------------ccCHHHH-HhcCCEEEEEeCCCCCCcCCCCCcCCC--CcEEHHHHHHHHHHHhcCCC
Confidence 42211 0122221 347999999999986 45678885321 1111111111000 000
Q ss_pred ----------HHHhhhH-----------HHHHhcC--cEEEEeccCee-cCCCChhHHHHHHHHHHhCCcEEEcCceeeE
Q 010331 233 ----------ELERRNF-----------ERLEEKG--IVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLGYFVRC 288 (513)
Q Consensus 233 ----------~~~~~~v-----------~~l~~~~--~vtli~~~~~l-l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 288 (513)
..++..+ ..+...+ .|+++.+.+.. ++..+. ..+.+++.||++++++.+.+
T Consensus 271 ~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~-----e~~~~~~~GV~~~~~~~~~~ 345 (467)
T TIGR01318 271 ESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRR-----EVANAREEGVEFLFNVQPVY 345 (467)
T ss_pred ccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHH-----HHHHHHhcCCEEEecCCcEE
Confidence 0011111 2223333 49999876543 343322 22456788999999999999
Q ss_pred EeccccccccccCCCcccccccccccCCCceEEE-ecc---cc--------cCCcceEEeeceEEEecCCCCCC-CCCCC
Q 010331 289 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILE-LQP---AI--------KGLESQIFEADLVLWTVGSKPLL-PHVEP 355 (513)
Q Consensus 289 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~---~~--------~~~~g~~i~aD~vi~a~G~~p~~-~~l~~ 355 (513)
+..+++.. + .++.+. ... .. ..++.++++||.||+++|++|+. .++..
T Consensus 346 i~~~~~g~-------v------------~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~ 406 (467)
T TIGR01318 346 IECDEDGR-------V------------TGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAG 406 (467)
T ss_pred EEECCCCe-------E------------EEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccc
Confidence 86532110 0 111111 000 00 01245689999999999999984 34432
Q ss_pred CCCccCCCccCCCCCeEeC----CCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHC
Q 010331 356 PNNRLHDLPLNARGQAETD----ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425 (513)
Q Consensus 356 ~~~~~~~~~~~~~G~i~Vd----~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~ 425 (513)
.+++++++|+|.|| .++++ +.|+|||+|||+.. +.++..|+.+|+.+|.||...+.
T Consensus 407 -----~gl~~~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~~--------~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 407 -----HGITLDSWGRIITGDVSYLPYQT-TNPKIFAGGDAVRG--------ADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred -----cCccCCCCCCEEeCCccccCccC-CCCCEEEECCcCCC--------ccHHHHHHHHHHHHHHHHHHHhc
Confidence 35778888999999 67887 89999999999875 56788999999999999988663
No 68
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.90 E-value=1.7e-22 Score=220.25 Aligned_cols=282 Identities=15% Similarity=0.105 Sum_probs=174.1
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|+|||||||||+||..|++. +++|+|+|+.+...... ....++...++++.....+++++.|++|..+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l--~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 397 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLL--TFGIPAFKLDKSLLARRREIFSAMGIEFELN 397 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCcee--eecCCCccCCHHHHHHHHHHHHHCCeEEECC
Confidence 457999999999999999999995 45999999977543211 1111111123344444556677789998876
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCC-CCCCCCCccc-cCCCCCCHHHHHHHHHHHH---
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAE-FAFPFSTLEDACRVDRKLS--- 232 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~-~~~~ipG~~~-~~~~~~~~~~a~~l~~~l~--- 232 (513)
.....+ +..++. ...||+|++|||+.. ..+.+||... ..+. ..+......+.+.
T Consensus 398 ~~v~~~------------------i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~--a~~~l~~~~~~~~~~~ 456 (654)
T PRK12769 398 CEVGKD------------------ISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYD--ALPFLIANTKQVMGLE 456 (654)
T ss_pred CEeCCc------------------CCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEE--hHHHHHHHHhhhccCc
Confidence 432211 111111 246999999999864 3567777532 1111 0110000000000
Q ss_pred ----------HHHhhhH-----------HHHHhcC--cEEEEeccCee-cCCCChhHHHHHHHHHHhCCcEEEcCceeeE
Q 010331 233 ----------ELERRNF-----------ERLEEKG--IVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLGYFVRC 288 (513)
Q Consensus 233 ----------~~~~~~v-----------~~l~~~~--~vtli~~~~~l-l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 288 (513)
..++.++ ..+...+ .|+++.+.+.. ++..+ ...+.+++.||++++++.+.+
T Consensus 457 ~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~-----~e~~~~~~~Gv~~~~~~~~~~ 531 (654)
T PRK12769 457 ELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSK-----KEVKNAREEGANFEFNVQPVA 531 (654)
T ss_pred cccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCH-----HHHHHHHHcCCeEEeccCcEE
Confidence 0011111 1222233 48888876543 33322 223557889999999999998
Q ss_pred EeccccccccccCCCcccccccccccCCCceEEE-ecc---ccc--------CCcceEEeeceEEEecCCCCCC-CCCCC
Q 010331 289 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILE-LQP---AIK--------GLESQIFEADLVLWTVGSKPLL-PHVEP 355 (513)
Q Consensus 289 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~---~~~--------~~~g~~i~aD~vi~a~G~~p~~-~~l~~ 355 (513)
+..+++.. + .++.+. .+. .+. .++..++++|.||+|+|+.|++ .++.
T Consensus 532 i~~~~~g~-------v------------~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~- 591 (654)
T PRK12769 532 LELNEQGH-------V------------CGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLE- 591 (654)
T ss_pred EEECCCCe-------E------------EEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccccc-
Confidence 86432100 0 111110 000 000 1134579999999999999985 3444
Q ss_pred CCCccCCCccCCCCCeEeCC----CccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 356 PNNRLHDLPLNARGQAETDE----TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 356 ~~~~~~~~~~~~~G~i~Vd~----~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
..+++++++|.|.||+ ++++ +.|+|||+|||+.. +.++..|+.+|+.+|.+|...|..
T Consensus 592 ----~~gl~~~~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~g--------~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 592 ----SHGVTVDKWGRIIADVESQYRYQT-SNPKIFAGGDAVRG--------ADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred ----ccCCcCCCCCCEEeCCCcccCccc-CCCCEEEcCCcCCC--------CcHHHHHHHHHHHHHHHHHHHhCc
Confidence 3468889999999995 4787 89999999999876 678899999999999999998865
No 69
>PRK13984 putative oxidoreductase; Provisional
Probab=99.90 E-value=2.4e-22 Score=217.76 Aligned_cols=297 Identities=16% Similarity=0.096 Sum_probs=172.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEE
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (513)
...++|+|||+|+||+++|..|++. +++|+|+|+.+....... + .+.....++++.....+++++.|++++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~-~-~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMR-Y-GIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEe-e-cCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 3467899999999999999999984 559999999875422111 0 1111112234444445667778999887
Q ss_pred EeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCC-CCCCCCCCccccCCCCCCHHHHHHHHHHHHH--
Q 010331 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-- 233 (513)
Q Consensus 157 ~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~-- 233 (513)
+.....+ +..++. ...||+||+|||+. ++.+++||.... ..+...+....+...+..
T Consensus 353 ~~~v~~~------------------~~~~~~-~~~yD~vilAtGa~~~r~l~i~G~~~~-gv~~a~~~l~~~~~~~~~~~ 412 (604)
T PRK13984 353 NTRVGKD------------------IPLEEL-REKHDAVFLSTGFTLGRSTRIPGTDHP-DVIQALPLLREIRDYLRGEG 412 (604)
T ss_pred CCEeCCc------------------CCHHHH-HhcCCEEEEEcCcCCCccCCCCCcCCc-CeEeHHHHHHHHHhhhccCC
Confidence 7433221 111111 35799999999987 577889996321 112223232223222211
Q ss_pred -----HHhhhH-----------HHHHhc-----C--cEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEe
Q 010331 234 -----LERRNF-----------ERLEEK-----G--IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 290 (513)
Q Consensus 234 -----~~~~~v-----------~~l~~~-----~--~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~ 290 (513)
.++.++ ..+... + .|+++... +....++.... .+.+ +.+.||+++++..+.++.
T Consensus 413 ~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~-r~~~~~~~~~~-e~~~-~~~~GV~i~~~~~~~~i~ 489 (604)
T PRK13984 413 PKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLE-RTFEEMPADME-EIEE-GLEEGVVIYPGWGPMEVV 489 (604)
T ss_pred CcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccc-cCcccCCCCHH-HHHH-HHHcCCEEEeCCCCEEEE
Confidence 011111 222222 1 36665332 11222332222 2223 346899999999888886
Q ss_pred ccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCC
Q 010331 291 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQ 370 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~ 370 (513)
.++... ..++..+........+...... ..++++++++|.||+++|++|+++++.... ..+++. ++|+
T Consensus 490 ~~~g~v-----~~v~~~~~~~~~~~~G~~~~~~----~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~--~~~l~~-~~G~ 557 (604)
T PRK13984 490 IENDKV-----KGVKFKKCVEVFDEEGRFNPKF----DESDQIIVEADMVVEAIGQAPDYSYLPEEL--KSKLEF-VRGR 557 (604)
T ss_pred ccCCEE-----EEEEEEEEeeccCCCCCcccee----cCCceEEEECCEEEEeeCCCCChhhhhhhh--ccCccc-cCCe
Confidence 432110 0000000000000000000000 012456899999999999999988775321 112433 4689
Q ss_pred eEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 371 AETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 371 i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
|.||+++++ +.|+|||+|||+.. + ....|+.+|+.+|.+|...|.+
T Consensus 558 i~vd~~~~T-s~~gVfAaGD~~~~--------~-~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 558 ILTNEYGQT-SIPWLFAGGDIVHG--------P-DIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred EEeCCCCcc-CCCCEEEecCcCCc--------h-HHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998 89999999999975 3 3578999999999999998865
No 70
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2e-23 Score=196.44 Aligned_cols=195 Identities=19% Similarity=0.277 Sum_probs=143.8
Q ss_pred eEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhhH----------HHHHhcCc-EEEEeccCe
Q 010331 188 LIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNF----------ERLEEKGI-VQAINVETT 256 (513)
Q Consensus 188 ~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~v----------~~l~~~~~-vtli~~~~~ 256 (513)
+.+.++.+|||||.+|++|+|||..|++++-.++ ..+..... +..++ ..|..-+. +|+.-+ +.
T Consensus 158 ~~~ta~~fvIatG~RPrYp~IpG~~Ey~ITSDDl---Fsl~~~PG--kTLvVGa~YVaLECAgFL~gfg~~vtVmVR-SI 231 (503)
T KOG4716|consen 158 RFLTAENFVIATGLRPRYPDIPGAKEYGITSDDL---FSLPYEPG--KTLVVGAGYVALECAGFLKGFGYDVTVMVR-SI 231 (503)
T ss_pred EEeecceEEEEecCCCCCCCCCCceeeeeccccc---ccccCCCC--ceEEEccceeeeehhhhHhhcCCCcEEEEE-Ee
Confidence 4688999999999999999999988876643322 22211100 00000 23333333 565544 46
Q ss_pred ecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEe
Q 010331 257 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 336 (513)
Q Consensus 257 ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~ 336 (513)
+|..++.++.+.+.+.++++||+|+-.+.+..++..++ +.+.+..+.+.++ ++-+-+
T Consensus 232 ~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~----------------------g~l~v~~k~t~t~-~~~~~~ 288 (503)
T KOG4716|consen 232 LLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDD----------------------GKLRVFYKNTNTG-EEGEEE 288 (503)
T ss_pred ecccccHHHHHHHHHHHHHhCCceeecccceeeeeccC----------------------CcEEEEeeccccc-ccccch
Confidence 78899999999999999999999999888877777543 4444544444444 444567
Q ss_pred eceEEEecCCCCCCCCCCCCCCccCCCccCC-CCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHH
Q 010331 337 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 415 (513)
Q Consensus 337 aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~-~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~ 415 (513)
+|.|+||+|.++++.-+... ..|+.+|+ .|.|.||+.-++ +.|+|||+||+.... |.+...|++.|+.
T Consensus 289 ydTVl~AiGR~~~~~~l~L~---~~GVk~n~ks~KI~v~~~e~t-~vp~vyAvGDIl~~k-------pELTPvAIqsGrl 357 (503)
T KOG4716|consen 289 YDTVLWAIGRKALTDDLNLD---NAGVKTNEKSGKIPVDDEEAT-NVPYVYAVGDILEDK-------PELTPVAIQSGRL 357 (503)
T ss_pred hhhhhhhhccccchhhcCCC---ccceeecccCCccccChHHhc-CCCceEEecceecCC-------cccchhhhhhchH
Confidence 99999999999998766544 45888764 589999988888 999999999998752 7788899999999
Q ss_pred HHHHHHH
Q 010331 416 AGWNLWA 422 (513)
Q Consensus 416 ~a~ni~~ 422 (513)
+|+.+.+
T Consensus 358 La~Rlf~ 364 (503)
T KOG4716|consen 358 LARRLFA 364 (503)
T ss_pred HHHHHhc
Confidence 9999876
No 71
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.89 E-value=5.3e-22 Score=205.73 Aligned_cols=292 Identities=23% Similarity=0.265 Sum_probs=214.2
Q ss_pred EEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC--CcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-e
Q 010331 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE--RFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD-R 158 (513)
Q Consensus 82 VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~--~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~ 158 (513)
+||||+|+||+++|..|.+.. .+.+++++...+ .+...+....+..+......+..... ...+.++.+..+ +
T Consensus 1 ivivG~g~aG~~aa~~l~~~~----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 75 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLL----LAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTE 75 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcC----CCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCE
Confidence 589999999999999988853 566777776654 44445565655555544444444333 223557777765 8
Q ss_pred EEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHHHHhhh
Q 010331 159 VKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN 238 (513)
Q Consensus 159 V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~ 238 (513)
|+.+|++.+ .+.+.++ ++.||+||+|||+++..+. ....+..+.++..+++..+.......+...
T Consensus 76 v~~id~~~~-------------~v~~~~g-~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 140 (415)
T COG0446 76 VTSIDPENK-------------VVLLDDG-EIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAEPPKDVV 140 (415)
T ss_pred EEEecCCCC-------------EEEECCC-cccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHhccCeEE
Confidence 999999887 4888888 8999999999999998765 222334566788888887776654422222
Q ss_pred H-----------HHHHhcC-cEEEEeccCeecCCCC-hhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcc
Q 010331 239 F-----------ERLEEKG-IVQAINVETTICPTGT-PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESG 305 (513)
Q Consensus 239 v-----------~~l~~~~-~vtli~~~~~ll~~~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~ 305 (513)
+ ..+...+ .|++++..+++++... +...+.+.+.++++||+++++..+.+++...+...
T Consensus 141 vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~-------- 212 (415)
T COG0446 141 VVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLV-------- 212 (415)
T ss_pred EECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcce--------
Confidence 2 5555665 5999999999988877 88899999999999999999999999988652100
Q ss_pred cccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCccccCCCCE
Q 010331 306 AIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRI 385 (513)
Q Consensus 306 ~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~V 385 (513)
... ... .++..+++|+++.++|.+||+.+...... .....+|+|.||+++++...++|
T Consensus 213 -----------~~~-~~~------~~~~~~~~d~~~~~~g~~p~~~l~~~~~~----~~~~~~g~i~v~~~~~~~~~~~v 270 (415)
T COG0446 213 -----------VER-VVG------IDGEEIKADLVIIGPGERPNVVLANDALP----GLALAGGAVLVDERGGTSKDPDV 270 (415)
T ss_pred -----------eeE-EEE------eCCcEEEeeEEEEeecccccHHHHhhCcc----ceeccCCCEEEccccccCCCCCE
Confidence 000 111 27889999999999999999655554210 14566789999999998348999
Q ss_pred EEEcccccccCCC-CC-CCCCchHHHHHHHHHHHHHHHHH
Q 010331 386 FALGDSSALRDSS-GR-PLPATAQVAFQQADFAGWNLWAA 423 (513)
Q Consensus 386 faiGD~a~~~~~~-g~-~~~~~a~~A~~qg~~~a~ni~~~ 423 (513)
|++|||+..+... +. ...+.++.|..+++.++.|+...
T Consensus 271 ~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 271 YAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred EeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 9999999987653 22 23677889999999999999865
No 72
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.89 E-value=1e-21 Score=213.20 Aligned_cols=294 Identities=13% Similarity=0.087 Sum_probs=174.3
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|+|||||+|||++|..|++. +++|+|+|+.+..... +..-+.....+.++.....++++..|++++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~--l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGM--LTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCe--eeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 468999999999999999999985 4599999998854211 11111111112334444556777889999876
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCC-CCCCCCCccccCCCCCCHHHHH-HHHHHHHH--
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDAC-RVDRKLSE-- 233 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~-~~~~ipG~~~~~~~~~~~~~a~-~l~~~l~~-- 233 (513)
..... .+.+++. ...||.|++|||+.. ..+++||.+.. .....-++. .....+..
T Consensus 381 ~~v~~------------------~~~~~~l-~~~~DaV~latGa~~~~~~~i~g~~~~--gv~~a~~~l~~~~~~~~~~~ 439 (639)
T PRK12809 381 CEIGR------------------DITFSDL-TSEYDAVFIGVGTYGMMRADLPHEDAP--GVIQALPFLTAHTRQLMGLP 439 (639)
T ss_pred CccCC------------------cCCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCccC--CcEeHHHHHHHHHHhhccCc
Confidence 42211 1222222 347999999999974 45678875321 111111111 00000000
Q ss_pred -----------HHhhhH-----------HHHHhcC--cEEEEeccCee-cCCCChhHHHHHHHHHHhCCcEEEcCceeeE
Q 010331 234 -----------LERRNF-----------ERLEEKG--IVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLGYFVRC 288 (513)
Q Consensus 234 -----------~~~~~v-----------~~l~~~~--~vtli~~~~~l-l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 288 (513)
.++..+ ..+...+ .|+++.+.+.. ++..+.. + ..+++.||++++++.+.+
T Consensus 440 ~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e----~-~~a~~eGv~~~~~~~~~~ 514 (639)
T PRK12809 440 ESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKE----V-VNAREEGVEFQFNVQPQY 514 (639)
T ss_pred cccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHH----H-HHHHHcCCeEEeccCCEE
Confidence 011111 2222233 58998876544 3333222 2 235678999999999999
Q ss_pred EeccccccccccCCCcccccccccccCC-CceEEEecccccCCcceEEeeceEEEecCCCCCC-CCCCCCCCccCCCccC
Q 010331 289 IRRVGEFEASVKQPESGAIPNIAADKNS-DKYILELQPAIKGLESQIFEADLVLWTVGSKPLL-PHVEPPNNRLHDLPLN 366 (513)
Q Consensus 289 i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~-~~l~~~~~~~~~~~~~ 366 (513)
+..+++.. ...+........+.+. +..... ...++..++++|.||+++|+.|+. .++. ..+++++
T Consensus 515 i~~~~~g~----v~~v~~~~~~~~~~~~~g~~~~~----~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~-----~~gl~~~ 581 (639)
T PRK12809 515 IACDEDGR----LTAVGLIRTAMGEPGPDGRRRPR----PVAGSEFELPADVLIMAFGFQAHAMPWLQ-----GSGIKLD 581 (639)
T ss_pred EEECCCCe----EEEEEEEEEEecCcCCCCCccce----ecCCceEEEECCEEEECcCCCCCcccccc-----ccCcccC
Confidence 97532110 0000000000000000 000000 001245689999999999999974 3443 3467888
Q ss_pred CCCCeEeCC----CccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCC
Q 010331 367 ARGQAETDE----TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 427 (513)
Q Consensus 367 ~~G~i~Vd~----~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~ 427 (513)
++|+|.||+ ++++ +.|+|||+|||+.. +.++..|+.+|+.+|.+|...+.++
T Consensus 582 ~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~g--------~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 582 KWGLIQTGDVGYLPTQT-HLKKVFAGGDAVHG--------ADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred CCCCEEeCCCcccCccc-CCCCEEEcCCCCCC--------chHHHHHHHHHHHHHHHHHHHHhhh
Confidence 899999985 3787 89999999999876 6688899999999999999988654
No 73
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.88 E-value=2.6e-22 Score=193.44 Aligned_cols=294 Identities=21% Similarity=0.308 Sum_probs=208.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc--CCchhhhh----------------hcc-----cc
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF--KPMLYELL----------------SGE-----VD 135 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~--~p~~~~~~----------------~g~-----~~ 135 (513)
+...+|||||.+..+++..+.. ++++.++++|...+..+| .|+..++- .|. ++
T Consensus 178 hvp~liigggtaAfaa~rai~s----~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffe 253 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKS----NDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFE 253 (659)
T ss_pred cCceeEEcCCchhhhccccccc----CCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEec
Confidence 4568999999999988887766 468899999988776555 23322211 110 11
Q ss_pred CCcchHhHHHHh--cCCCeEEEEE-eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCC-CC-
Q 010331 136 AWEIAPRFADLL--ANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVV-PG- 210 (513)
Q Consensus 136 ~~~~~~~~~~~~--~~~~v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~i-pG- 210 (513)
++.+.....++- .+-||.+.++ .|..||..++ .|.++||.+|.||.++||||.+|+...+ ..
T Consensus 254 pd~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~-------------~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A 320 (659)
T KOG1346|consen 254 PDGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDK-------------KVILNDGTTIGYDKCLIATGVRPKKLQVFEEA 320 (659)
T ss_pred CCcceeChhHCcccccCceEEEeccceEEeecccC-------------eEEecCCcEeehhheeeecCcCcccchhhhhc
Confidence 222222223322 2347888888 8899988776 5999999999999999999999874432 22
Q ss_pred ---ccccCCCCCCHHHHHHHHHHHHHHHhhhH-------HHH----Hh----cC-cEE-EEeccCeecCCCChhHHHHHH
Q 010331 211 ---AAEFAFPFSTLEDACRVDRKLSELERRNF-------ERL----EE----KG-IVQ-AINVETTICPTGTPGNREAAL 270 (513)
Q Consensus 211 ---~~~~~~~~~~~~~a~~l~~~l~~~~~~~v-------~~l----~~----~~-~vt-li~~~~~ll~~~~~~~~~~~~ 270 (513)
..+....++.+.|+..+.+.+...+.+.+ .+| .. .+ .|. ++.-....-.-+|+.++++..
T Consensus 321 ~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ 400 (659)
T KOG1346|consen 321 SEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTI 400 (659)
T ss_pred CHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHH
Confidence 22344556778888887776654433332 222 11 11 122 222221112234677788888
Q ss_pred HHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCC
Q 010331 271 KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350 (513)
Q Consensus 271 ~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~ 350 (513)
+.+++.||.|+.+..|..+.... +.+.++|. +|.++..|+||+|+|..||+
T Consensus 401 ekir~~GV~V~pna~v~sv~~~~-----------------------~nl~lkL~------dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 401 EKIRKGGVDVRPNAKVESVRKCC-----------------------KNLVLKLS------DGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred HHHHhcCceeccchhhhhhhhhc-----------------------cceEEEec------CCCeeeeeeEEEEecCCCch
Confidence 99999999999999998887755 56677775 89999999999999999998
Q ss_pred CCCCCCCCccCCCccCCC-CCeEeCCCccccCCCCEEEEcccccccCC-CCCCCCCchHHHHHHHHHHHHHHHHHHC
Q 010331 351 PHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRDS-SGRPLPATAQVAFQQADFAGWNLWAAIN 425 (513)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~-G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~-~g~~~~~~a~~A~~qg~~~a~ni~~~l~ 425 (513)
++.... |+++|++ |.+.||..|+. ..|||++||++.+.|+ -|+.......+|+-.|+.++.||....+
T Consensus 452 ela~~s-----gLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAak 521 (659)
T KOG1346|consen 452 ELAEAS-----GLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAK 521 (659)
T ss_pred hhcccc-----cceeecccCcEEeeheeec--ccceeeecchhhhhcccccceeccccccceeeceecccccccccC
Confidence 887754 6788875 88999999998 6899999999999887 3655566777888999999999977543
No 74
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.88 E-value=3.9e-21 Score=199.32 Aligned_cols=306 Identities=15% Similarity=0.155 Sum_probs=175.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEE
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (513)
...++|+|||||||||+||..|++. ..+++|+|+|+.+..+. -+.+.+.+.......+...+..+++..+++|+.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~----~~g~~Vtv~E~~p~pgG-lvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~ 98 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKA----HDGARVDIIERLPTPFG-LVRSGVAPDHPETKNVTNQFSRVATDDRVSFFG 98 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhh----CCCCeEEEEecCCCCcc-eEeeccCCCcchhHHHHHHHHHHHHHCCeEEEc
Confidence 3457999999999999999999862 25679999999885332 112222233333445556677777778888886
Q ss_pred EeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCC-CCCCCCCccccCCCCCCHHHHHH---------
Q 010331 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACR--------- 226 (513)
Q Consensus 157 ~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~--------- 226 (513)
+..... .+.+++. ...||+||||||+.+ +.+++||.... .+.+..+...
T Consensus 99 nv~vg~------------------dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~--gV~~a~~fl~~~ng~~d~~ 157 (491)
T PLN02852 99 NVTLGR------------------DVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLP--GVLSAREFVWWYNGHPDCV 157 (491)
T ss_pred CEEECc------------------cccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCC--CeEEHHHHHHHhhcchhhh
Confidence 532221 2444443 347999999999985 67889995321 1112112111
Q ss_pred -HHHHHHHHHhhhH-------------------------------HHHHhcC--cEEEEeccCeecCC-CChhHH-----
Q 010331 227 -VDRKLSELERRNF-------------------------------ERLEEKG--IVQAINVETTICPT-GTPGNR----- 266 (513)
Q Consensus 227 -l~~~l~~~~~~~v-------------------------------~~l~~~~--~vtli~~~~~ll~~-~~~~~~----- 266 (513)
+...+...++.++ +.|+..+ .|+++.+....-.. .+.+++
T Consensus 158 ~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l 237 (491)
T PLN02852 158 HLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGL 237 (491)
T ss_pred hhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhcc
Confidence 1100000111111 2222212 37777765421100 011111
Q ss_pred ----------------------------HHHHHHHH----h---------CCcEEEcCceeeEEeccccccccccCCCcc
Q 010331 267 ----------------------------EAALKVLS----A---------RKVQLVLGYFVRCIRRVGEFEASVKQPESG 305 (513)
Q Consensus 267 ----------------------------~~~~~~l~----~---------~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~ 305 (513)
+...+.|. + ++|.+++...+.+|....+... ++..++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~--~v~~l~ 315 (491)
T PLN02852 238 KNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNG--HVAGVK 315 (491)
T ss_pred CCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCC--cEEEEE
Confidence 11112221 2 5799999999999874211000 011111
Q ss_pred cccccccccCC-CceEEEecccccCCcceEEeeceEEEecCCC--CCCCC-CCCCCCccCCCccCCCCCeEeCCCccccC
Q 010331 306 AIPNIAADKNS-DKYILELQPAIKGLESQIFEADLVLWTVGSK--PLLPH-VEPPNNRLHDLPLNARGQAETDETLCVKG 381 (513)
Q Consensus 306 ~~~~~~~~~~~-~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~--p~~~~-l~~~~~~~~~~~~~~~G~i~Vd~~l~~~~ 381 (513)
+........+. +.... ...++.+.++||.||.++|++ |.+.+ +.. ..++..+.+|+|.+|+.+++ +
T Consensus 316 ~~~~~l~~~~~~g~~~~-----~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~----~~gv~~n~~G~V~~d~~~~T-~ 385 (491)
T PLN02852 316 LERTVLEGAAGSGKQVA-----VGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDH----KRGVVPNVHGRVLSSASGAD-T 385 (491)
T ss_pred EEEeecCCCcccCCccc-----CCCCCEEEEECCEEEEeecCCCCCCCCCcccc----CcCeeECCCceEEeCCCCcc-C
Confidence 11100000000 00000 011244579999999999998 55443 322 23566788899999987777 8
Q ss_pred CCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCC
Q 010331 382 HPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 427 (513)
Q Consensus 382 ~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~ 427 (513)
.|+|||+|||...+ ......++.+|..++.+|..++...
T Consensus 386 ipGvyAaGDi~~Gp-------~gvI~t~~~dA~~ta~~i~~d~~~~ 424 (491)
T PLN02852 386 EPGLYVVGWLKRGP-------TGIIGTNLTCAEETVASIAEDLEQG 424 (491)
T ss_pred CCCEEEeeeEecCC-------CCeeeecHhhHHHHHHHHHHHHHcC
Confidence 99999999999862 2367788999999999999988653
No 75
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.87 E-value=6.8e-21 Score=204.56 Aligned_cols=285 Identities=20% Similarity=0.170 Sum_probs=172.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEE
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (513)
...++|+|||+||+||++|..|++. +++|+|+|+.+..... +...+.+...+.++.....+.+.+.|+++..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~--l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGM--MRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCe--eeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 3467999999999999999999984 4599999998754321 1111121122233344444556678888776
Q ss_pred EeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCC-CCCCCCCccccCCCCCCHHHHHHHHHHHHH--
Q 010331 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSE-- 233 (513)
Q Consensus 157 ~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~-- 233 (513)
+.....+.. .++ ....||++|+|+|+.. ....++|.... .... +..+......
T Consensus 207 ~~~~~~~~~------------------~~~-~~~~~D~Vi~AtG~~~~~~~~i~g~~~~--gv~~---~~~~l~~~~~~~ 262 (564)
T PRK12771 207 GVRVGEDIT------------------LEQ-LEGEFDAVFVAIGAQLGKRLPIPGEDAA--GVLD---AVDFLRAVGEGE 262 (564)
T ss_pred CCEECCcCC------------------HHH-HHhhCCEEEEeeCCCCCCcCCCCCCccC--CcEE---HHHHHHHhhccC
Confidence 632211110 000 1225999999999874 45567774321 1111 1111111100
Q ss_pred ----HHhhhH-----------HHHHhc--CcEEEEeccCee-cCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccc
Q 010331 234 ----LERRNF-----------ERLEEK--GIVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEF 295 (513)
Q Consensus 234 ----~~~~~v-----------~~l~~~--~~vtli~~~~~l-l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~ 295 (513)
.++..+ ..+... ..++++.+.+.. ++... .. .+...+.||+++++..+.++..+++.
T Consensus 263 ~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~----~~-~~~a~~~GVki~~~~~~~~i~~~~~~ 337 (564)
T PRK12771 263 PPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHD----EE-IEEALREGVEINWLRTPVEIEGDENG 337 (564)
T ss_pred CcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCH----HH-HHHHHHcCCEEEecCCcEEEEcCCCC
Confidence 011111 112222 247777765421 22222 22 23345689999999999999764321
Q ss_pred cccccCCCcccccccccccCCCceEEEec-cccc------CCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCC
Q 010331 296 EASVKQPESGAIPNIAADKNSDKYILELQ-PAIK------GLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 368 (513)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~~~~------~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~ 368 (513)
.. .++. +.+++. .... .++..++++|.||+++|+.|+++++... .++. +++
T Consensus 338 ~~-----~v~~------------~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~----~gl~-~~~ 395 (564)
T PRK12771 338 AT-----GLRV------------ITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESV----PGVE-VGR 395 (564)
T ss_pred EE-----EEEE------------EEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhc----cCcc-cCC
Confidence 00 0000 011110 0000 1244689999999999999998887641 2455 778
Q ss_pred CCeEeCC-CccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCCC
Q 010331 369 GQAETDE-TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429 (513)
Q Consensus 369 G~i~Vd~-~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~~ 429 (513)
|+|.||+ ++++ +.|+|||+|||+.. ++++..|+.||+.+|.+|.+.+.+++.
T Consensus 396 G~i~vd~~~~~t-s~~~Vfa~GD~~~g--------~~~v~~Av~~G~~aA~~i~~~L~g~~~ 448 (564)
T PRK12771 396 GVVQVDPNFMMT-GRPGVFAGGDMVPG--------PRTVTTAIGHGKKAARNIDAFLGGEPY 448 (564)
T ss_pred CCEEeCCCCccC-CCCCEEeccCcCCC--------chHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999998 5555 89999999999875 779999999999999999999987653
No 76
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.85 E-value=4.5e-20 Score=208.88 Aligned_cols=290 Identities=16% Similarity=0.073 Sum_probs=174.0
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCC-CeEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANT-GVQFFK 156 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~-~v~~~~ 156 (513)
..++|+|||||||||+||..|++ .+++|+|||+++....+...........+..++.....+.++.. +++++.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar------~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~ 235 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAAR------AGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLP 235 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEc
Confidence 35799999999999999999998 45699999998754332221110001122233434455555555 588886
Q ss_pred E-eEEEEeCCCCcCcC-CCceeeccc-eE-ecCCceEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHH
Q 010331 157 D-RVKLLCPSDHLGVN-GPMACTHGG-TV-LLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS 232 (513)
Q Consensus 157 ~-~V~~id~~~~~~~~-~~~v~~~~~-~v-~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~ 232 (513)
+ +|..+......... ......... .. ..+...++.||+||||||+.++.+++||... ..+.+...+..+.+.-.
T Consensus 236 ~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~--pgV~~~~~~~~~l~~~~ 313 (985)
T TIGR01372 236 RTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDR--PGVMLAGAARTYLNRYG 313 (985)
T ss_pred CCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCC--CCcEEchHHHHHHHhhC
Confidence 4 77777543211000 000000000 00 0011126899999999999999999999643 11222222222211100
Q ss_pred --HHHhhhH-----------HHHHhcC--cEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccc
Q 010331 233 --ELERRNF-----------ERLEEKG--IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 297 (513)
Q Consensus 233 --~~~~~~v-----------~~l~~~~--~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~ 297 (513)
..++.++ ..|...+ .+++++..+.+ ...+.+.|++.||++++++.+.++..++.+
T Consensus 314 ~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v-- 383 (985)
T TIGR01372 314 VAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------SPEARAEARELGIEVLTGHVVAATEGGKRV-- 383 (985)
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------hHHHHHHHHHcCCEEEcCCeEEEEecCCcE--
Confidence 0112211 4445555 37777765433 234567789999999999999999764321
Q ss_pred cccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCC--CCeEeCC
Q 010331 298 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR--GQAETDE 375 (513)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~--G~i~Vd~ 375 (513)
..+.++.. ++++++++||.|+++.|.+||++++...+. .+..++. +++.
T Consensus 384 -------------------~~V~l~~~----~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~---~~~~~~~~~~~~~--- 434 (985)
T TIGR01372 384 -------------------SGVAVARN----GGAGQRLEADALAVSGGWTPVVHLFSQRGG---KLAWDAAIAAFLP--- 434 (985)
T ss_pred -------------------EEEEEEec----CCceEEEECCEEEEcCCcCchhHHHHhcCC---CeeeccccCceec---
Confidence 23344311 125678999999999999999887654321 1111211 2211
Q ss_pred CccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 376 TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 376 ~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
.++.|+||++|||+.. ..+..|+.+|..+|..|+..+..
T Consensus 435 ---~t~v~gVyaaGD~~g~---------~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 435 ---GDAVQGCILAGAANGL---------FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred ---CCCCCCeEEeeccCCc---------cCHHHHHHHHHHHHHHHHHHcCC
Confidence 2368999999999874 47778999999999999888754
No 77
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.8e-20 Score=173.76 Aligned_cols=283 Identities=17% Similarity=0.188 Sum_probs=180.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEE-eCCCCcccCCc-hhhhhh-ccccCCcchHhHHHHhcCCCeE
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLV-DQSERFVFKPM-LYELLS-GEVDAWEIAPRFADLLANTGVQ 153 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lI-e~~~~~~~~p~-~~~~~~-g~~~~~~~~~~~~~~~~~~~v~ 153 (513)
...++|+||||||||-+||.+.+|. +++.=|+ |+-.-...-.+ +..++. -..+-..+...+++..+++.|+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARK------GiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vD 282 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARK------GIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVD 282 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhh------cchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCch
Confidence 4568999999999999999999994 4465555 33111111111 111111 1122335667778888889998
Q ss_pred EEEE-eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCcccc-------CCCCCCHHHHH
Q 010331 154 FFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEF-------AFPFSTLEDAC 225 (513)
Q Consensus 154 ~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~-------~~~~~~~~~a~ 225 (513)
++.. +++.+.+.... -...+|.+++|-.+....+|++||++.+..++||..++ |+.|..+--
T Consensus 283 imn~qra~~l~~a~~~--------~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF-- 352 (520)
T COG3634 283 VMNLQRASKLEPAAVE--------GGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLF-- 352 (520)
T ss_pred hhhhhhhhcceecCCC--------CccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCccc--
Confidence 8865 67777663210 00136899999999999999999999999999997553 333322110
Q ss_pred HHHHHH--HHHHhhhH-HHHHhc---CcEEEEeccCeecCCCChhHHHHHHHHHHh-CCcEEEcCceeeEEecccccccc
Q 010331 226 RVDRKL--SELERRNF-ERLEEK---GIVQAINVETTICPTGTPGNREAALKVLSA-RKVQLVLGYFVRCIRRVGEFEAS 298 (513)
Q Consensus 226 ~l~~~l--~~~~~~~v-~~l~~~---~~vtli~~~~~ll~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~~~~ 298 (513)
-.+++ .......+ ..+.-. ..||+++-.+.+ +..+.+++.|.. .+|+++.+...++|.++++..
T Consensus 353 -~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV-- 423 (520)
T COG3634 353 -KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKV-- 423 (520)
T ss_pred -CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh------hhHHHHHHHHhcCCCcEEEecceeeEEecCCcee--
Confidence 00000 00000001 111111 237777654433 112334444443 689999999999999975311
Q ss_pred ccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCCcc
Q 010331 299 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 378 (513)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~l~ 378 (513)
.++..+ +...+ +...++-+-|++-+|..|||+|++. .++++++|.|.||....
T Consensus 424 ------------------~Gl~Y~--dr~sg-e~~~l~LeGvFVqIGL~PNT~WLkg------~vel~~rGEIivD~~g~ 476 (520)
T COG3634 424 ------------------TGLEYR--DRVSG-EEHHLELEGVFVQIGLLPNTEWLKG------AVELNRRGEIIVDARGE 476 (520)
T ss_pred ------------------cceEEE--eccCC-ceeEEEeeeeEEEEecccChhHhhc------hhhcCcCccEEEecCCC
Confidence 222222 22222 4567888899999999999999986 37899999999999999
Q ss_pred ccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHH
Q 010331 379 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 419 (513)
Q Consensus 379 ~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~n 419 (513)
+ +.|+|||+|||...+ -++...|+.+|..++-+
T Consensus 477 T-svpGvFAAGD~T~~~-------yKQIIIamG~GA~AaL~ 509 (520)
T COG3634 477 T-NVPGVFAAGDCTTVP-------YKQIIIAMGEGAKASLS 509 (520)
T ss_pred c-CCCceeecCcccCCc-------cceEEEEecCcchhhhh
Confidence 8 999999999999874 35666666666665543
No 78
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.78 E-value=1.4e-19 Score=168.50 Aligned_cols=135 Identities=27% Similarity=0.430 Sum_probs=85.8
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCC--chhhhhhccccCCcchH-----hHHHHhcCCCeE
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP--MLYELLSGEVDAWEIAP-----RFADLLANTGVQ 153 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p--~~~~~~~g~~~~~~~~~-----~~~~~~~~~~v~ 153 (513)
||||||||+||++||.+|++ .+.+|+|||+.+...+.. ................. .+.+.+...+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~------~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 74 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR------PGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVE 74 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH------TTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHE
T ss_pred CEEEEecHHHHHHHHHHHhc------CCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEE
Confidence 69999999999999999997 567999999987544421 22222111111111111 333334567889
Q ss_pred E-EEEeEEEEeCCCCcCcCCCceeeccc---eEecCCceEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHH
Q 010331 154 F-FKDRVKLLCPSDHLGVNGPMACTHGG---TVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD 228 (513)
Q Consensus 154 ~-~~~~V~~id~~~~~~~~~~~v~~~~~---~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~ 228 (513)
+ +..++..|+...+. +..... .....++.+++||+||||||+.++.+.+||. +..+..++..++..+.
T Consensus 75 ~~~~~~v~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~ 146 (201)
T PF07992_consen 75 IRLNAKVVSIDPESKR------VVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFL 146 (201)
T ss_dssp EEHHHTEEEEEESTTE------EEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHH
T ss_pred Eeeccccccccccccc------cccCcccceeeccCCceEecCCeeeecCccccceeecCCC-cccccccccccccccc
Confidence 8 45699999877651 101110 1234566799999999999999998999996 3434445555554443
No 79
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.73 E-value=6.6e-17 Score=168.31 Aligned_cols=257 Identities=17% Similarity=0.234 Sum_probs=149.6
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc----ccCCc------------------hhh-h-----
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF----VFKPM------------------LYE-L----- 129 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~----~~~p~------------------~~~-~----- 129 (513)
..++|+|||||+|||+||++|.+ .+++|+|+|+++.. .+.+. .+. +
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~------~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p 82 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRR------EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLP 82 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHh------cCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCC
Confidence 35799999999999999999998 45699999998732 11110 000 0
Q ss_pred --------hhc--c----------c-cCCcchHhHHHHhcCCCeE--EEE-EeEEEEeCCCCcCcCCCceeeccceEecC
Q 010331 130 --------LSG--E----------V-DAWEIAPRFADLLANTGVQ--FFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLE 185 (513)
Q Consensus 130 --------~~g--~----------~-~~~~~~~~~~~~~~~~~v~--~~~-~~V~~id~~~~~~~~~~~v~~~~~~v~~~ 185 (513)
.+. . + ...++...++++.++.++. +.. .+|+.|++.++. +.|.+.
T Consensus 83 ~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~-----------w~V~~~ 151 (461)
T PLN02172 83 RECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK-----------WRVQSK 151 (461)
T ss_pred HhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe-----------EEEEEE
Confidence 000 0 0 1134555667777777776 443 589999765431 234443
Q ss_pred C--c--eEEEecEEEEeCC--CCCCCCCCCCcccc------CCCCCCHHHHHHHHHHHHHHHhhhH-----------HHH
Q 010331 186 S--G--LIVEYDWLVLSLG--AEPKLDVVPGAAEF------AFPFSTLEDACRVDRKLSELERRNF-----------ERL 242 (513)
Q Consensus 186 ~--g--~~i~yD~LVlAtG--s~~~~~~ipG~~~~------~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l 242 (513)
+ + .+..||+||+||| +.|+.|.+||..++ ...+++.++. +. +++++ .+|
T Consensus 152 ~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~---~g-----k~VvVVG~G~Sg~diA~~L 223 (461)
T PLN02172 152 NSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPF---KN-----EVVVVIGNFASGADISRDI 223 (461)
T ss_pred cCCCceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCcccc---CC-----CEEEEECCCcCHHHHHHHH
Confidence 2 2 2467999999999 67889999997542 3333433321 00 11111 233
Q ss_pred Hhc-CcEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEE
Q 010331 243 EEK-GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYIL 321 (513)
Q Consensus 243 ~~~-~~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 321 (513)
... ..|+++.+...... ...+......+..+..|..+.++ +.|.+
T Consensus 224 ~~~a~~V~l~~r~~~~~~----------~~~~~~~~~~v~~~~~I~~~~~~------------------------g~V~f 269 (461)
T PLN02172 224 AKVAKEVHIASRASESDT----------YEKLPVPQNNLWMHSEIDTAHED------------------------GSIVF 269 (461)
T ss_pred HHhCCeEEEEEeeccccc----------cccCcCCCCceEECCcccceecC------------------------CeEEE
Confidence 332 35777776542210 00011112333444444433321 33444
Q ss_pred EecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeCCC--------ccccC-CCCEEEEcccc
Q 010331 322 ELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET--------LCVKG-HPRIFALGDSS 392 (513)
Q Consensus 322 ~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd~~--------l~~~~-~p~VfaiGD~a 392 (513)
+ +|+.+++|.||+|||++++.+++... |.+.+|++ .-.+. .|+++.+|=..
T Consensus 270 ~--------DG~~~~~D~Ii~~TGy~~~~pfL~~~------------~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~ 329 (461)
T PLN02172 270 K--------NGKVVYADTIVHCTGYKYHFPFLETN------------GYMRIDENRVEPLYKHVFPPALAPGLSFIGLPA 329 (461)
T ss_pred C--------CCCCccCCEEEECCcCCccccccCcc------------cceeeCCCcchhhHHhhcCCCCCCcEEEEeccc
Confidence 3 77889999999999999999887642 33334322 11233 38999999553
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010331 393 ALRDSSGRPLPATAQVAFQQADFAGWNLWA 422 (513)
Q Consensus 393 ~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~ 422 (513)
. ......+..|++.+|+-+.+
T Consensus 330 ~---------~~~f~~~E~Qa~~~a~v~sG 350 (461)
T PLN02172 330 M---------GIQFVMFEIQSKWVAAVLSG 350 (461)
T ss_pred c---------ccCchhHHHHHHHHHHHHcC
Confidence 2 23445778889888876654
No 80
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.67 E-value=4.7e-17 Score=148.74 Aligned_cols=278 Identities=19% Similarity=0.197 Sum_probs=146.4
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcc----cCCchh---hhhhccccCCcchHhHHHHhcCCCeE
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV----FKPMLY---ELLSGEVDAWEIAPRFADLLANTGVQ 153 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~----~~p~~~---~~~~g~~~~~~~~~~~~~~~~~~~v~ 153 (513)
+.+|||||.||.+||.+|+.+. +..+|+||..++..- |++... .+-.....-.++..+++.++
T Consensus 1 kfivvgggiagvscaeqla~~~----psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~------ 70 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE----PSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFL------ 70 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC----CCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHH------
Confidence 4689999999999999999863 677999999887432 222111 00000000111222222222
Q ss_pred EEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCccccCCCCCCHHHHHHHHHHHHH
Q 010331 154 FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE 233 (513)
Q Consensus 154 ~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~ 233 (513)
. .|..++..++ .+.+++|.++.|++|++|+|.+|... ..|.+....++++.+.++.++..+..
T Consensus 71 --~-~v~~~~s~eh-------------ci~t~~g~~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl~k 133 (334)
T KOG2755|consen 71 --N-DVVTWDSSEH-------------CIHTQNGEKLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKLVK 133 (334)
T ss_pred --H-hhhhhccccc-------------eEEecCCceeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHHhh
Confidence 2 2555655554 58999999999999999999998644 34445666778899999988888866
Q ss_pred HHhhhH--------HHHHhcC--cEEEEeccCeecCC-CChhHHHHHHHHHH------------hCCcEEEcCceeeEEe
Q 010331 234 LERRNF--------ERLEEKG--IVQAINVETTICPT-GTPGNREAALKVLS------------ARKVQLVLGYFVRCIR 290 (513)
Q Consensus 234 ~~~~~v--------~~l~~~~--~vtli~~~~~ll~~-~~~~~~~~~~~~l~------------~~gV~v~~~~~v~~i~ 290 (513)
.+.+.+ +...+.. .|+-......+... ++++..+.+...+. -+.++...+..-.-+-
T Consensus 134 aK~VlilgnGgia~El~yElk~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg 213 (334)
T KOG2755|consen 134 AKIVLILGNGGIAMELTYELKILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVG 213 (334)
T ss_pred cceEEEEecCchhHHHHHHhhcceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcc
Confidence 554432 1111111 12222222222211 22333222211110 0111111111100000
Q ss_pred ccccccccccCCCccc------ccccccccCC---------CceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCC
Q 010331 291 RVGEFEASVKQPESGA------IPNIAADKNS---------DKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 355 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~------~~~~~~~~~~---------~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~ 355 (513)
.. -.+| |...+.+ ......+... +...+.-....++.+ ..+.||.+++++|..||+++.-.
T Consensus 214 ~a-lgpD--w~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~-~qlt~d~ivSatgvtpn~e~~~~ 289 (334)
T KOG2755|consen 214 PA-LGPD--WHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMAD-NQLTCDFIVSATGVTPNSEWAMN 289 (334)
T ss_pred cc-cCcc--hhhhcccccchhhhhhhhHHhhhheeeeccchhhccccccccccccc-ceeeeeEEEeccccCcCceEEec
Confidence 00 0000 0000000 0000000000 000011011112223 35779999999999999885532
Q ss_pred CCCccCCCccCCCCCeEeCCCccccCCCCEEEEccccccc
Q 010331 356 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALR 395 (513)
Q Consensus 356 ~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~ 395 (513)
..+...++|.++||+.|++ +.|+|||+||++...
T Consensus 290 -----~~lq~~edggikvdd~m~t-slpdvFa~gDvctt~ 323 (334)
T KOG2755|consen 290 -----KMLQITEDGGIKVDDAMET-SLPDVFAAGDVCTTT 323 (334)
T ss_pred -----ChhhhccccCeeehhhccc-cccceeeecceeccC
Confidence 1355678899999999999 899999999999863
No 81
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.65 E-value=2.3e-15 Score=154.83 Aligned_cols=294 Identities=18% Similarity=0.101 Sum_probs=179.2
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|.|||+||||++||..|.+. +++||++|+.+.....- .+ -++....+.++.....+++++.|++|+.+
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~------G~~Vtv~e~~~~~GGll-~y-GIP~~kl~k~i~d~~i~~l~~~Gv~~~~~ 193 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRA------GHDVTVFERVALDGGLL-LY-GIPDFKLPKDILDRRLELLERSGVEFKLN 193 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhC------CCeEEEeCCcCCCceeE-Ee-cCchhhccchHHHHHHHHHHHcCeEEEEc
Confidence 348999999999999999999995 55999999977432211 11 12333445678888888999999999987
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCC-CCCCCCCCccccCCCCCCHHHHHHHHHHHHH--H
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--L 234 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~--~ 234 (513)
.....+ +++++- .-+||++++|+|+. ++..++||.+ ......|..+...... +
T Consensus 194 ~~vG~~------------------it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d-----~~gv~~A~dfL~~~~~~~~ 249 (457)
T COG0493 194 VRVGRD------------------ITLEEL-LKEYDAVFLATGAGKPRPLDIPGED-----AKGVAFALDFLTRLNKEVL 249 (457)
T ss_pred ceECCc------------------CCHHHH-HHhhCEEEEeccccCCCCCCCCCcC-----CCcchHHHHHHHHHHHHHh
Confidence 554432 233222 34679999999974 6778899853 1122233333222211 0
Q ss_pred -------------HhhhH--------H----HHHhcC-cEEEEeccCe--ecCCCChhHHHHHHHHHHhCCcEEEcCcee
Q 010331 235 -------------ERRNF--------E----RLEEKG-IVQAINVETT--ICPTGTPGNREAALKVLSARKVQLVLGYFV 286 (513)
Q Consensus 235 -------------~~~~v--------~----~l~~~~-~vtli~~~~~--ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v 286 (513)
++.++ + .+.... .++.+.+... -....+........+...+.|+..++....
T Consensus 250 ~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~ 329 (457)
T COG0493 250 GDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQP 329 (457)
T ss_pred cccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCc
Confidence 11111 1 112111 2444431111 111122222344456677889988888888
Q ss_pred eEEeccccccccccCCCccccccccccc-CC----CceEEEecccccCCcceEEeeceEEEecCCCCCCCCCCCCCCccC
Q 010331 287 RCIRRVGEFEASVKQPESGAIPNIAADK-NS----DKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 361 (513)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~ 361 (513)
.++..++.+. ...+........+. +. +.+.+ . .+...+++|.|+.++|+.++....... ..
T Consensus 330 ~~~~~~e~Gr----V~~~~~~~~~~~~~~~~~~r~~p~~v------~-gs~~~~~aD~v~~aig~~~~~~~~~~~---~~ 395 (457)
T COG0493 330 KAFIGNEGGR----VTGVKFGRVEPGEYVDGWGRRGPVGV------I-GTEKTDAADTVILAIGFEGDATDGLLL---EF 395 (457)
T ss_pred eeEeecCCCc----EeeeecccccccCcccccccccCccc------c-CceEEehHHHHHHHhccCCCccccccc---cc
Confidence 8887644321 01111110000000 00 00111 1 245689999999999999874332211 12
Q ss_pred CCccCCCCCeEeCCCc-cccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHH-HHHCC
Q 010331 362 DLPLNARGQAETDETL-CVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW-AAIND 426 (513)
Q Consensus 362 ~~~~~~~G~i~Vd~~l-~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~-~~l~~ 426 (513)
++..+..|++.+|+.+ ++ +.|++||.||+... ..+...|+.+|+.+|+-|. ..+.+
T Consensus 396 ~~~~~~~g~i~~~~~~~~t-s~~~vfa~gD~~~g--------~~~vv~ai~eGr~aak~i~~~~l~~ 453 (457)
T COG0493 396 GLKLDKRGRIKVDENLQQT-SIPGVFAGGDAVRG--------AALVVWAIAEGREAAKAIDKELLLG 453 (457)
T ss_pred ccccCCCCceecccccccc-cCCCeeeCceeccc--------hhhhhhHHhhchHHHHhhhHHHHhh
Confidence 4678899999999988 66 89999999999986 5788899999999999998 44443
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.64 E-value=8e-15 Score=159.74 Aligned_cols=112 Identities=18% Similarity=0.261 Sum_probs=72.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC--------------CcccCCchhhhh---hccccCCcc
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE--------------RFVFKPMLYELL---SGEVDAWEI 139 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~--------------~~~~~p~~~~~~---~g~~~~~~~ 139 (513)
...++|+||||||||++||++|++. +++|||+|+.+ .+.|.+++.+.. .|.+..-.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~------Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGI 454 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRS------GHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGI 454 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhC------CCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCc
Confidence 4568999999999999999999984 55999999853 234556555544 232222111
Q ss_pred h--------HhHHHHhcC-CCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCC-CCCCCCCC
Q 010331 140 A--------PRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA-EPKLDVVP 209 (513)
Q Consensus 140 ~--------~~~~~~~~~-~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs-~~~~~~ip 209 (513)
. ..++.+++. .+++++.+...+.+ ++.++-....||+|+||||+ .++.+++|
T Consensus 455 p~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~d------------------it~edl~~~gyDAV~IATGA~kpr~L~IP 516 (1028)
T PRK06567 455 TVRWDKNNLDILRLILERNNNFKYYDGVALDFN------------------ITKEQAFDLGFDHIAFCIGAGQPKVLDIE 516 (1028)
T ss_pred cccchHHHHHHHHHHHhcCCceEEECCeEECcc------------------CCHHHHhhcCCCEEEEeCCCCCCCCCCCC
Confidence 1 122333322 34666656443321 33333234679999999999 69999999
Q ss_pred Ccc
Q 010331 210 GAA 212 (513)
Q Consensus 210 G~~ 212 (513)
|.+
T Consensus 517 Ged 519 (1028)
T PRK06567 517 NFE 519 (1028)
T ss_pred Ccc
Confidence 964
No 83
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.60 E-value=2.5e-14 Score=152.16 Aligned_cols=291 Identities=20% Similarity=0.184 Sum_probs=162.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEE
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (513)
...++|.|||+|||||+||-+|-+.| +.|+++|+.+.....- .+.+ +.....+.+..+..+++.+.||+|+.
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~g------h~v~vyer~dr~ggll-~ygi-pnmkldk~vv~rrv~ll~~egi~f~t 1854 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAG------HTVTVYERSDRVGGLL-MYGI-PNMKLDKFVVQRRVDLLEQEGIRFVT 1854 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcC------cEEEEEEecCCcCcee-eecC-CccchhHHHHHHHHHHHHhhCceEEe
Confidence 34689999999999999999999855 4999999988543211 1111 11111123555666788889999997
Q ss_pred EeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCC-CCCCCCCCccccCCCCCCHHHHHHHHHHH-HHH
Q 010331 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKL-SEL 234 (513)
Q Consensus 157 ~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~l-~~~ 234 (513)
+.-..- .+.+ |+..-.+|.+|+|+|+. |+..++||-+ ++.+.-|.++...- +.+
T Consensus 1855 n~eigk------------------~vs~-d~l~~~~daiv~a~gst~prdlpv~grd-----~kgv~fame~l~~ntk~l 1910 (2142)
T KOG0399|consen 1855 NTEIGK------------------HVSL-DELKKENDAIVLATGSTTPRDLPVPGRD-----LKGVHFAMEFLEKNTKSL 1910 (2142)
T ss_pred eccccc------------------cccH-HHHhhccCeEEEEeCCCCCcCCCCCCcc-----ccccHHHHHHHHHhHHhh
Confidence 743222 1333 22345799999999986 6788899942 44444555443221 111
Q ss_pred HhhhH--HHHHhcC-cEEEEeccC--------------------eecCCCChh-------------HH-HHHHHHH-HhC
Q 010331 235 ERRNF--ERLEEKG-IVQAINVET--------------------TICPTGTPG-------------NR-EAALKVL-SAR 276 (513)
Q Consensus 235 ~~~~v--~~l~~~~-~vtli~~~~--------------------~ll~~~~~~-------------~~-~~~~~~l-~~~ 276 (513)
..... ..+..++ +|.++..++ .+||.-|+. ++ ++-.+.. +..
T Consensus 1911 ld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~ 1990 (2142)
T KOG0399|consen 1911 LDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHY 1990 (2142)
T ss_pred hccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHh
Confidence 11110 1111111 233332221 122211100 00 0111111 112
Q ss_pred CcEEEcCce-eeEEeccccccccccCCCcccccccccccCCCceEEEecccc--------cCCcceEEeeceEEEecCCC
Q 010331 277 KVQLVLGYF-VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI--------KGLESQIFEADLVLWTVGSK 347 (513)
Q Consensus 277 gV~v~~~~~-v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~--------~~~~g~~i~aD~vi~a~G~~ 347 (513)
|-+.+.-+. ..++..++.. .++.. +.|.++.+..+ ...+.+.|+||+||++.|+.
T Consensus 1991 g~dpr~y~vltk~f~~~~~g-------~v~gl---------~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~ 2054 (2142)
T KOG0399|consen 1991 GSDPRTYSVLTKRFIGDDNG-------NVTGL---------ETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFV 2054 (2142)
T ss_pred CCCcceeeeeeeeeeccCCC-------ceeeE---------EEEEEEEEecCCCceEEEEcCCcceeeecceeeeecccc
Confidence 222111110 1112222110 11100 22223222111 11256789999999999998
Q ss_pred CCCCCCCCCCCccCCCccCCCCCeEeC-CCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 348 PLLPHVEPPNNRLHDLPLNARGQAETD-ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 348 p~~~~l~~~~~~~~~~~~~~~G~i~Vd-~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
.+-+.+.. .+++..|.++.|.+- +.+.+ +.++|||+|||-.. ..+..+|+++|+.+|+.+-....+
T Consensus 2055 gpe~~~~~----~~~~~~d~rsni~t~~~~y~t-~v~~vfaagdcrrg--------qslvvwai~egrq~a~~vd~~~~~ 2121 (2142)
T KOG0399|consen 2055 GPEKSVIE----QLNLKTDPRSNILTPKDSYST-DVAKVFAAGDCRRG--------QSLVVWAIQEGRQAARQVDELMGG 2121 (2142)
T ss_pred Ccchhhhh----hcCcccCccccccCCCccccc-cccceeecccccCC--------ceEEEEEehhhhHHHHHHHHHhCC
Confidence 65333332 457888888888765 44555 79999999999886 567889999999999999886666
Q ss_pred CC
Q 010331 427 RP 428 (513)
Q Consensus 427 ~~ 428 (513)
+.
T Consensus 2122 ~t 2123 (2142)
T KOG0399|consen 2122 TT 2123 (2142)
T ss_pred cc
Confidence 55
No 84
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.52 E-value=9.8e-13 Score=130.42 Aligned_cols=142 Identities=19% Similarity=0.211 Sum_probs=96.6
Q ss_pred cEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEeccc
Q 010331 247 IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA 326 (513)
Q Consensus 247 ~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~ 326 (513)
.|+++....+- +.....++..+.-++.||+++.+. +.+|.+..+ +.+.++.+++
T Consensus 402 ~v~I~YmDiRa---fG~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~----------------------~~l~V~~EdT 455 (622)
T COG1148 402 DVTIYYMDIRA---FGKDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPK----------------------KKLIVRVEDT 455 (622)
T ss_pred ceeEEEEEeec---cCccHHHHHHhhhhhhchhhhcCC-hHHheeCCC----------------------CeeEEEEEec
Confidence 36665554332 223334455555557899987764 445544332 4456666665
Q ss_pred ccCCcceEEeeceEEEecCCCCCCCCCCCCCCccCCCccCCCCCeEeC-CCccc--cCCCCEEEEcccccccCCCCCCCC
Q 010331 327 IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETD-ETLCV--KGHPRIFALGDSSALRDSSGRPLP 403 (513)
Q Consensus 327 ~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~~~~~~~~~~~~G~i~Vd-~~l~~--~~~p~VfaiGD~a~~~~~~g~~~~ 403 (513)
..+ .-.++++|+||+++|+.|.. -.+.. ...+|+..+++|+++.. +.++- ...++||.+|=|.. |
T Consensus 456 l~g-~~~e~~~DLVVLa~Gmep~~-g~~ki-a~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg---------P 523 (622)
T COG1148 456 LTG-EVKEIEADLVVLATGMEPSE-GAKKI-AKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG---------P 523 (622)
T ss_pred cCc-cceecccceEEEeeccccCc-chHHH-HHhcCcccCCCCccccCCCCcccccccCCcEEEeecccC---------C
Confidence 555 56789999999999999852 21111 11678999999999987 66653 25789999997765 8
Q ss_pred CchHHHHHHHHHHHHHHHHHHCC
Q 010331 404 ATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 404 ~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
+..+.++.||..+|....+.+..
T Consensus 524 kdI~~siaqa~aAA~kA~~~l~~ 546 (622)
T COG1148 524 KDIADSIAQAKAAAAKAAQLLGR 546 (622)
T ss_pred ccHHHHHHHhHHHHHHHHHHhhc
Confidence 99999999999999887776654
No 85
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.49 E-value=8.3e-14 Score=147.12 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=67.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccC------------Cchhhhh---------------h
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK------------PMLYELL---------------S 131 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~------------p~~~~~~---------------~ 131 (513)
+++|+|||||++||++|+.|.+ .+++++++|+++..... +....+. +
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e------~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p 74 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLE------EGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFP 74 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHH------TT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HC
T ss_pred CCEEEEECccHHHHHHHHHHHH------CCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCC
Confidence 3799999999999999999998 56799999998843110 0000000 0
Q ss_pred cc----ccCCcchHhHHHHhcCCCeE-EE--EEeEEEEeCCCCcCcCCCceeeccceEecC-Cc--eEEEecEEEEeCCC
Q 010331 132 GE----VDAWEIAPRFADLLANTGVQ-FF--KDRVKLLCPSDHLGVNGPMACTHGGTVLLE-SG--LIVEYDWLVLSLGA 201 (513)
Q Consensus 132 g~----~~~~~~~~~~~~~~~~~~v~-~~--~~~V~~id~~~~~~~~~~~v~~~~~~v~~~-~g--~~i~yD~LVlAtGs 201 (513)
.. ....++...++.+.+++++. ++ ..+|+++........ ...+.|+++ +| ++..||+||+|||.
T Consensus 75 ~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~------~~~W~V~~~~~g~~~~~~fD~VvvatG~ 148 (531)
T PF00743_consen 75 EDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSA------TGKWEVTTENDGKEETEEFDAVVVATGH 148 (531)
T ss_dssp CCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-------ETEEEEEETTTTEEEEEEECEEEEEE-S
T ss_pred CCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCC------CceEEEEeecCCeEEEEEeCeEEEcCCC
Confidence 00 01124556666776666542 33 357888865332100 011345443 33 24569999999995
Q ss_pred --CCCCCC--CCCccc
Q 010331 202 --EPKLDV--VPGAAE 213 (513)
Q Consensus 202 --~~~~~~--ipG~~~ 213 (513)
.|+.|. +||+++
T Consensus 149 ~~~P~~P~~~~~G~e~ 164 (531)
T PF00743_consen 149 FSKPNIPEPSFPGLEK 164 (531)
T ss_dssp SSCESB-----CTGGG
T ss_pred cCCCCCChhhhhhhhc
Confidence 567774 888765
No 86
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.40 E-value=2.9e-12 Score=123.60 Aligned_cols=109 Identities=26% Similarity=0.427 Sum_probs=78.9
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|.|||+||||+.+|..|.+. .+++.|+|+|+.+ .+|.-.-+.+++..-+...+...+.+.+++....|+.+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~----~~~~~Vdi~Ek~P-vPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv 94 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKR----HPNAHVDIFEKLP-VPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNV 94 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhc----CCCCeeEeeecCC-cccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecc
Confidence 46999999999999999999883 4778999999988 23333334455555555667778888888877777755
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCC-CCCCCCCCcc
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAA 212 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~-~~~~~ipG~~ 212 (513)
+| +- .+.+.+- +-.||.+|||.|+. ++.++|||.+
T Consensus 95 ~v-G~------------------dvsl~eL-~~~ydavvLaYGa~~dR~L~IPGe~ 130 (468)
T KOG1800|consen 95 KV-GR------------------DVSLKEL-TDNYDAVVLAYGADGDRRLDIPGEE 130 (468)
T ss_pred ee-cc------------------cccHHHH-hhcccEEEEEecCCCCcccCCCCcc
Confidence 33 11 1333222 44799999999986 5788999954
No 87
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.38 E-value=6.9e-12 Score=128.57 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=65.8
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|+||||||||++||.+|.+. .+++|+|+|+.+...... -+.+.+.....+.+...+...+...+++|..+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~-----~g~~VtlfEk~p~pgGLv-R~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gn 111 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH-----ERVKVDIFEKLPNPYGLI-RYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGN 111 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-----cCCeEEEEecCCCCccEE-EEeCCCCCccHHHHHHHHHHHHhhCCeEEEee
Confidence 457999999999999999987642 467999999988553221 12233333333455566666666678888732
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~ 204 (513)
.-.+. .++.++- .-.||.||+|+|+.+.
T Consensus 112 v~VG~------------------Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 112 VHVGV------------------DLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred eEecC------------------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence 11111 1333333 2379999999998854
No 88
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.31 E-value=1.1e-10 Score=119.85 Aligned_cols=147 Identities=16% Similarity=0.037 Sum_probs=95.1
Q ss_pred cEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEeccc
Q 010331 247 IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA 326 (513)
Q Consensus 247 ~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~ 326 (513)
.|+++...+..++.. ++.+.+.+.+++.|+++++++.|.++...+ +.+.....
T Consensus 245 ~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-----------------------~~V~~v~~-- 297 (422)
T PRK05329 245 PVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEG-----------------------GRVTAVWT-- 297 (422)
T ss_pred CEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-----------------------CEEEEEEe--
Confidence 488887777766653 677778888999999999999999987643 22322111
Q ss_pred ccCCcceEEeeceEEEecCCCCCCCCCCCCC-Cc--cCCCcc--------------------CCCCCeEeCCCccc----
Q 010331 327 IKGLESQIFEADLVLWTVGSKPLLPHVEPPN-NR--LHDLPL--------------------NARGQAETDETLCV---- 379 (513)
Q Consensus 327 ~~~~~g~~i~aD~vi~a~G~~p~~~~l~~~~-~~--~~~~~~--------------------~~~G~i~Vd~~l~~---- 379 (513)
.......+++|.||+|+|..++..+..... ++ .+++++ ..-| |.||++|+.
T Consensus 298 -~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~G-V~~d~~~~p~~~~ 375 (422)
T PRK05329 298 -RNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFG-VATDATLRPLDSQ 375 (422)
T ss_pred -eCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcC-ceECCCcCcccCC
Confidence 111335799999999999887644421100 00 112222 1112 778877775
Q ss_pred --cCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010331 380 --KGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 424 (513)
Q Consensus 380 --~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l 424 (513)
+.++|+||+|++....|+--+ -.-.-.|+..|.++|++|.+..
T Consensus 376 g~~~~~nl~a~G~vl~g~d~~~~--~~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 376 GGPVIENLYAAGAVLGGYDPIRE--GCGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred CCeeccceEEeeehhcCCchHHh--CCCchhHHHHHHHHHHHHHHhh
Confidence 247999999999998775100 0112378888999999887654
No 89
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.03 E-value=1.4e-09 Score=107.02 Aligned_cols=108 Identities=27% Similarity=0.346 Sum_probs=73.4
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc------------------------ccCC----chhh-
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF------------------------VFKP----MLYE- 128 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~------------------------~~~p----~~~~- 128 (513)
+.++|+|||||+|||.||..+++.| .+|+|||+.+.. ...| .++.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G------~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sa 75 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAG------RRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSA 75 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcC------CEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHH
Confidence 3579999999999999999999954 599999998710 0011 0000
Q ss_pred -----------h-----------hhccccC-----CcchHhHHHHhcCCCeEEEEE-eEEEEeCCCCcCcCCCceeeccc
Q 010331 129 -----------L-----------LSGEVDA-----WEIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGG 180 (513)
Q Consensus 129 -----------~-----------~~g~~~~-----~~~~~~~~~~~~~~~v~~~~~-~V~~id~~~~~~~~~~~v~~~~~ 180 (513)
+ -.|.+-+ +.+..-+..-+++.||+++.. +|.+++.++. .+
T Consensus 76 l~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~-----------~f 144 (408)
T COG2081 76 LARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS-----------GF 144 (408)
T ss_pred HHhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc-----------eE
Confidence 0 0121111 123344445566778998875 8888876652 13
Q ss_pred eEecCCceEEEecEEEEeCCCC
Q 010331 181 TVLLESGLIVEYDWLVLSLGAE 202 (513)
Q Consensus 181 ~v~~~~g~~i~yD~LVlAtGs~ 202 (513)
.+.+.+|.++.+|.||||||..
T Consensus 145 ~l~t~~g~~i~~d~lilAtGG~ 166 (408)
T COG2081 145 RLDTSSGETVKCDSLILATGGK 166 (408)
T ss_pred EEEcCCCCEEEccEEEEecCCc
Confidence 6888899889999999999944
No 90
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.01 E-value=1.8e-09 Score=108.26 Aligned_cols=230 Identities=18% Similarity=0.163 Sum_probs=107.6
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCch--hh------hhhccc---cC------------
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPML--YE------LLSGEV---DA------------ 136 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~--~~------~~~g~~---~~------------ 136 (513)
+|+|+||.||++|+.|..|... ...++..+|+++.+.|.|.+ +. .+.... +|
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~-----~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~ 77 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEH-----GDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHE 77 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHH-----H---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHH
T ss_pred eeEEEEeeCHHHHHHHHHhhhc-----CCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHH
Confidence 6899999999999999999986 35799999999977776622 11 111100 01
Q ss_pred ----------------CcchHhHHHHh-cCCCe-EEEEEeEEEEeCCCCcCcCCCceeeccceEec----CCceEEEecE
Q 010331 137 ----------------WEIAPRFADLL-ANTGV-QFFKDRVKLLCPSDHLGVNGPMACTHGGTVLL----ESGLIVEYDW 194 (513)
Q Consensus 137 ----------------~~~~~~~~~~~-~~~~v-~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~----~~g~~i~yD~ 194 (513)
+.....+-.++ ++..- -....+|++|++....+. ..+.|.+ .++..+.++.
T Consensus 78 ~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~-------~~~~V~~~~~~g~~~~~~ar~ 150 (341)
T PF13434_consen 78 HGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDE-------DLFRVTTRDSDGDGETYRARN 150 (341)
T ss_dssp TT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTE-------EEEEEEEEETTS-EEEEEESE
T ss_pred cCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCc-------cEEEEEEeecCCCeeEEEeCe
Confidence 00111122222 23332 223458999987653100 1135665 2456899999
Q ss_pred EEEeCCCCCCCCCCCC-cc--ccCCCCCCHHHHHHHHHHHHHHHhhhH-----------HHHHhc---CcEEEEeccCee
Q 010331 195 LVLSLGAEPKLDVVPG-AA--EFAFPFSTLEDACRVDRKLSELERRNF-----------ERLEEK---GIVQAINVETTI 257 (513)
Q Consensus 195 LVlAtGs~~~~~~ipG-~~--~~~~~~~~~~~a~~l~~~l~~~~~~~v-----------~~l~~~---~~vtli~~~~~l 257 (513)
||||+|.+|..|..-. +. +.++ .+. +...-.......++..| ..|... ..|+.+.+...+
T Consensus 151 vVla~G~~P~iP~~~~~~~~~~~v~--Hss-~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 151 VVLATGGQPRIPEWFQDLPGSPRVF--HSS-EYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp EEE----EE---GGGGGGTT-TTEE--EGG-GHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred EEECcCCCCCCCcchhhcCCCCCEE--Eeh-HhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 9999998877554211 11 1111 111 11111111111111111 233222 258888887666
Q ss_pred cCCCC---------h-----------hHHHH--------------------H------HHHHHhCCcEEEcCceeeEEec
Q 010331 258 CPTGT---------P-----------GNREA--------------------A------LKVLSARKVQLVLGYFVRCIRR 291 (513)
Q Consensus 258 l~~~~---------~-----------~~~~~--------------------~------~~~l~~~gV~v~~~~~v~~i~~ 291 (513)
.+... + ..+.. + ++...+..++++.++.|..++.
T Consensus 228 ~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~ 307 (341)
T PF13434_consen 228 FPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQ 307 (341)
T ss_dssp EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEE
T ss_pred CCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEE
Confidence 54311 1 11111 1 1122344688999999999887
Q ss_pred cccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCC
Q 010331 292 VGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 347 (513)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~ 347 (513)
.++ +++.+.++....+ ...++++|.||+|||++
T Consensus 308 ~~~----------------------~~~~l~~~~~~~~-~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 308 DGD----------------------GGVRLTLRHRQTG-EEETLEVDAVILATGYR 340 (341)
T ss_dssp ES-----------------------SSEEEEEEETTT---EEEEEESEEEE---EE
T ss_pred CCC----------------------CEEEEEEEECCCC-CeEEEecCEEEEcCCcc
Confidence 652 4677777654444 56789999999999975
No 91
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.00 E-value=6.1e-10 Score=103.70 Aligned_cols=111 Identities=23% Similarity=0.372 Sum_probs=66.0
Q ss_pred EEECCCHHHHHHHHHhhhccccCCCCCe-EEEEeCCCCc------------ccCCchh-------h---h----h-----
Q 010331 83 CILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQSERF------------VFKPMLY-------E---L----L----- 130 (513)
Q Consensus 83 VIVGgG~AGl~aA~~L~~~~~~~~~~~~-V~lIe~~~~~------------~~~p~~~-------~---~----~----- 130 (513)
+|||||++||++|..|.+. +.+ ++|||+++.. .+.|... . . .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~------g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER------GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRW 74 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT------T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHH
T ss_pred CEECcCHHHHHHHHHHHhC------CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCC
Confidence 7999999999999999995 447 9999998521 0111110 0 0 0
Q ss_pred -hccccCCcchHhHHHHhcCCCeEEEE-EeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCC--CCCCC
Q 010331 131 -SGEVDAWEIAPRFADLLANTGVQFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA--EPKLD 206 (513)
Q Consensus 131 -~g~~~~~~~~~~~~~~~~~~~v~~~~-~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs--~~~~~ 206 (513)
......+++...+..+.+++++++.. .+|+++..++. .+.|++.++.++.+|+||+|||. .|+.|
T Consensus 75 ~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~-----------~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 75 PHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGD-----------GWTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp SBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETT-----------TEEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred CcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEecc-----------EEEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 00112234556667777778888665 48999977654 14788888888999999999995 77888
Q ss_pred CCCC
Q 010331 207 VVPG 210 (513)
Q Consensus 207 ~ipG 210 (513)
.+||
T Consensus 144 ~~~g 147 (203)
T PF13738_consen 144 DIPG 147 (203)
T ss_dssp S-TT
T ss_pred cccc
Confidence 8888
No 92
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.99 E-value=6e-09 Score=107.13 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=73.4
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcc----cCC-------chhhh---------------hh
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV----FKP-------MLYEL---------------LS 131 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~----~~p-------~~~~~---------------~~ 131 (513)
+.++|+|||+|+|||.+|+.|.+ .+++++++|+.+... |++ ..+.- ..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~------~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf 78 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR------EGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPF 78 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH------CCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCC
Confidence 46899999999999999999998 456999999988431 120 00000 00
Q ss_pred c-----cccC-CcchHhHHHHhcCCCe--EEEEE-eEEEEeCCCCcCcCCCceeeccceEecCCc----eEEEecEEEEe
Q 010331 132 G-----EVDA-WEIAPRFADLLANTGV--QFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESG----LIVEYDWLVLS 198 (513)
Q Consensus 132 g-----~~~~-~~~~~~~~~~~~~~~v--~~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g----~~i~yD~LVlA 198 (513)
. .... .++...++.+.+++++ .+..+ +|..++...+ . .+.|.+.+. .+.-||.|++|
T Consensus 79 ~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~---g-------kW~V~~~~~~~~~~~~ifd~VvVc 148 (448)
T KOG1399|consen 79 PERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK---G-------KWRVTTKDNGTQIEEEIFDAVVVC 148 (448)
T ss_pred cccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC---C-------ceeEEEecCCcceeEEEeeEEEEc
Confidence 0 0011 2455666677766664 23333 5666665441 0 024444332 46679999999
Q ss_pred CCCC--CCCCCCCCc
Q 010331 199 LGAE--PKLDVVPGA 211 (513)
Q Consensus 199 tGs~--~~~~~ipG~ 211 (513)
||-. |+.|.+||.
T Consensus 149 tGh~~~P~~P~~~g~ 163 (448)
T KOG1399|consen 149 TGHYVEPRIPQIPGP 163 (448)
T ss_pred ccCcCCCCCCcCCCC
Confidence 9976 777777773
No 93
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.98 E-value=2.5e-08 Score=98.17 Aligned_cols=109 Identities=23% Similarity=0.291 Sum_probs=71.0
Q ss_pred CCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCCC-CCC
Q 010331 276 RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP-HVE 354 (513)
Q Consensus 276 ~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~~-~l~ 354 (513)
..|.++.++.+..++..++ +.+.+.+.....+ +.++++.|.||+|||++...+ |+.
T Consensus 291 ~~v~l~~~~ev~~~~~~G~----------------------g~~~l~~~~~~~~-~~~t~~~D~vIlATGY~~~~P~fL~ 347 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGD----------------------GRYRLTLRHHETG-ELETVETDAVILATGYRRAVPSFLE 347 (436)
T ss_pred CCeeeccccceeeeecCCC----------------------ceEEEEEeeccCC-CceEEEeeEEEEecccccCCchhhh
Confidence 4566777777777766542 2366665543333 677899999999999995544 555
Q ss_pred CCCCccCCCccCCCCCeEeCCCccccCCC----CEEEEcccccccCCCCCCCCCchHHHHHHH
Q 010331 355 PPNNRLHDLPLNARGQAETDETLCVKGHP----RIFALGDSSALRDSSGRPLPATAQVAFQQA 413 (513)
Q Consensus 355 ~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p----~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg 413 (513)
... -.+..|++|+..|+...++...+ .||+-|=+.... |-..|.+...|.+.+
T Consensus 348 ~l~---d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htH---Gig~pdLsl~a~Raa 404 (436)
T COG3486 348 GLA---DRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTH---GIGAPDLSLGAWRAA 404 (436)
T ss_pred hHH---HhhcccccCCeEecCceeeecCCCCcceEEEeccccccc---ccCCccchHHHHHHH
Confidence 421 13446889999999888774322 699999776652 323355665555543
No 94
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.94 E-value=3.3e-09 Score=110.37 Aligned_cols=123 Identities=22% Similarity=0.320 Sum_probs=77.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCe-EEEEeCCCCcc-------c------CCchhhhhh-------cccc
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQSERFV-------F------KPMLYELLS-------GEVD 135 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~-V~lIe~~~~~~-------~------~p~~~~~~~-------g~~~ 135 (513)
..+.+|+|||||++||++|+.|.+.+- . ++|+|++.... | .|....-++ ....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~------~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~ 79 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGV------PDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFA 79 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCC------CcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCC
Confidence 446899999999999999999999654 4 99999986211 1 111100000 1111
Q ss_pred C-CcchHhHHHHhcCCCeEEEE---EeEEEEeCCCCcCcCCCceeeccceEecCCceE--EEecEEEEeCC--CCCCCCC
Q 010331 136 A-WEIAPRFADLLANTGVQFFK---DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI--VEYDWLVLSLG--AEPKLDV 207 (513)
Q Consensus 136 ~-~~~~~~~~~~~~~~~v~~~~---~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~--i~yD~LVlAtG--s~~~~~~ 207 (513)
. .++...+.+++++++.++.. ..|+.++.+++. ..++|+++++.. +.+|+||+||| +.|+.|.
T Consensus 80 ~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~---------~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~ 150 (443)
T COG2072 80 PFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDT---------KRWTVTTSDGGTGELTADFVVVATGHLSEPYIPD 150 (443)
T ss_pred CcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCC---------CeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCC
Confidence 1 12455566666666544332 244445555431 124677777754 55999999999 5688899
Q ss_pred CCCcccc
Q 010331 208 VPGAAEF 214 (513)
Q Consensus 208 ipG~~~~ 214 (513)
++|.+++
T Consensus 151 ~~G~~~f 157 (443)
T COG2072 151 FAGLDEF 157 (443)
T ss_pred CCCccCC
Confidence 9997663
No 95
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.91 E-value=1.1e-07 Score=100.45 Aligned_cols=49 Identities=20% Similarity=0.134 Sum_probs=40.7
Q ss_pred EeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCCC
Q 010331 372 ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 429 (513)
Q Consensus 372 ~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~~ 429 (513)
.++.+|++...||+|++||++.. .-...|..||-+++.|+...+.++++
T Consensus 347 ~l~~~le~k~~~gLf~AGqi~Gt---------~Gy~eAaa~Gl~Ag~naa~~~~~~~~ 395 (617)
T TIGR00136 347 QLKPTLETKLIQGLFFAGQINGT---------TGYEEAAAQGLMAGINAALKLQNKEP 395 (617)
T ss_pred hCchhheeCCCCCeEEccccCCc---------chHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45678999889999999998774 12558999999999999999988763
No 96
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.88 E-value=1.4e-07 Score=95.87 Aligned_cols=126 Identities=17% Similarity=0.103 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceE-EEecccccCCcceEEeeceEE
Q 010331 263 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI-LELQPAIKGLESQIFEADLVL 341 (513)
Q Consensus 263 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~i~aD~vi 341 (513)
..+.+.+.+.+++.|++++.+..|.++..++ +.+. +.+. .+ ....+.+|.+|
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-----------------------~~v~~V~t~---~g-~~~~l~AD~vV 315 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-----------------------NRVTRIHTR---NH-RDIPLRADHFV 315 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-----------------------CeEEEEEec---CC-ccceEECCEEE
Confidence 4556667788899999999999999887644 2232 2211 11 12479999999
Q ss_pred EecCCC-CCCCCCCCCC-C--ccCCCcc----CC---------------CCCeEeCCCcccc----CCCCEEEEcccccc
Q 010331 342 WTVGSK-PLLPHVEPPN-N--RLHDLPL----NA---------------RGQAETDETLCVK----GHPRIFALGDSSAL 394 (513)
Q Consensus 342 ~a~G~~-p~~~~l~~~~-~--~~~~~~~----~~---------------~G~i~Vd~~l~~~----~~p~VfaiGD~a~~ 394 (513)
+|+|.. .+ .++...+ + ..+++++ +. .=.|.||++||.. .++|+||+|-+...
T Consensus 316 LAaGaw~S~-gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G 394 (419)
T TIGR03378 316 LASGSFFSN-GLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGG 394 (419)
T ss_pred EccCCCcCH-HHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcC
Confidence 999988 43 2222110 0 0123322 00 1137899999841 27999999999988
Q ss_pred cCC--CCCCCCCchHHHHHHHHHHHHHH
Q 010331 395 RDS--SGRPLPATAQVAFQQADFAGWNL 420 (513)
Q Consensus 395 ~~~--~g~~~~~~a~~A~~qg~~~a~ni 420 (513)
.|+ +| .-.-.|+..|.++|++|
T Consensus 395 ~d~~~~g----cG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 395 YDPIFEG----CGSGVAVSTALHAAEQI 418 (419)
T ss_pred CChHhcC----CCchhHHHHHHHHHHhh
Confidence 775 11 11237788888888876
No 97
>PLN02463 lycopene beta cyclase
Probab=98.83 E-value=2e-08 Score=104.32 Aligned_cols=111 Identities=18% Similarity=0.286 Sum_probs=73.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCch---h---------hhhhcc-----------
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPML---Y---------ELLSGE----------- 133 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~---~---------~~~~g~----------- 133 (513)
...+||+|||||+||+++|..|++ .+++|+|||+++...+...+ . ..+...
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~------~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~ 99 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSE------AGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDG 99 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHH------CCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCC
Confidence 345799999999999999999998 46699999997643221100 0 000000
Q ss_pred -----------ccCCcchHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCC
Q 010331 134 -----------VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202 (513)
Q Consensus 134 -----------~~~~~~~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~ 202 (513)
++..++...+.+.+...+++++.++|++|+.++.. ..|.+++|.++++|+||.|+|..
T Consensus 100 ~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~-----------~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 100 KKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESK-----------SLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred CCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCe-----------EEEEECCCCEEEcCEEEECcCCC
Confidence 00111222333444557899988899998755431 25777888889999999999987
Q ss_pred CC
Q 010331 203 PK 204 (513)
Q Consensus 203 ~~ 204 (513)
..
T Consensus 169 s~ 170 (447)
T PLN02463 169 RC 170 (447)
T ss_pred cC
Confidence 54
No 98
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.80 E-value=4.4e-07 Score=87.54 Aligned_cols=137 Identities=11% Similarity=0.063 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccc---cCCcceEEeeceEE
Q 010331 265 NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI---KGLESQIFEADLVL 341 (513)
Q Consensus 265 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~---~~~~g~~i~aD~vi 341 (513)
+...+.+...+.|++++.++.+.++..+++.. + .++.+...... ...+...+.|+.||
T Consensus 106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~-------V------------~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI 166 (257)
T PRK04176 106 AAAKLAAAAIDAGAKIFNGVSVEDVILREDPR-------V------------AGVVINWTPVEMAGLHVDPLTIEAKAVV 166 (257)
T ss_pred HHHHHHHHHHHcCCEEEcCceeceeeEeCCCc-------E------------EEEEEccccccccCCCCCcEEEEcCEEE
Confidence 33445555677899999999998886533100 0 12222111000 01145689999999
Q ss_pred EecCCCCCCC-CC---------CCCCCccCCCccCCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHH-
Q 010331 342 WTVGSKPLLP-HV---------EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF- 410 (513)
Q Consensus 342 ~a~G~~p~~~-~l---------~~~~~~~~~~~~~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~- 410 (513)
.|+|...... .+ .-.+ ......+......|+.+-++ +|++|++|=+++..+ |.|...-...++
T Consensus 167 ~ATG~~a~v~~~l~~~~~~~~~~~~g--~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~--~~~rmg~~fg~m~ 240 (257)
T PRK04176 167 DATGHDAEVVSVLARKGPELGIEVPG--EKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVH--GLPRMGPIFGGML 240 (257)
T ss_pred EEeCCCcHHHHHHHHHcCCcccccCC--ccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhc--CCCccCchhHhHH
Confidence 9999754311 00 0011 01111222334455555555 899999998887543 333333333344
Q ss_pred HHHHHHHHHHHHHHCC
Q 010331 411 QQADFAGWNLWAAIND 426 (513)
Q Consensus 411 ~qg~~~a~ni~~~l~~ 426 (513)
-.|+.+|+-|...++.
T Consensus 241 ~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 241 LSGKKVAELILEKLKK 256 (257)
T ss_pred HhHHHHHHHHHHHhhc
Confidence 6789999999887754
No 99
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.79 E-value=8.4e-09 Score=105.65 Aligned_cols=108 Identities=27% Similarity=0.367 Sum_probs=59.9
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc-------------------------cc---CC-chhhhh
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF-------------------------VF---KP-MLYELL 130 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~-------------------------~~---~p-~~~~~~ 130 (513)
+||+|||||+|||.||..+++ .+.+|+|+|+++.. .. .+ .+...+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~------~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l 74 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE------KGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSAL 74 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH------TT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHh------CCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHH
Confidence 589999999999999999998 56699999998710 00 01 110000
Q ss_pred -----------------------hccc-----cCCcchHhHHHHhcCCCeEEEEE-eEEEEeCCCCcCcCCCceeeccce
Q 010331 131 -----------------------SGEV-----DAWEIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGT 181 (513)
Q Consensus 131 -----------------------~g~~-----~~~~~~~~~~~~~~~~~v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~ 181 (513)
.|.+ ...++..-+.+.+++.+++++.+ +|.+|..++.. .+.
T Consensus 75 ~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~----------~f~ 144 (409)
T PF03486_consen 75 KRFSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDG----------VFG 144 (409)
T ss_dssp HHS-HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTE----------EEE
T ss_pred hcCCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCc----------eeE
Confidence 0110 01123444555566779999975 89998654321 025
Q ss_pred EecCCceEEEecEEEEeCCCCC
Q 010331 182 VLLESGLIVEYDWLVLSLGAEP 203 (513)
Q Consensus 182 v~~~~g~~i~yD~LVlAtGs~~ 203 (513)
|.++++.++.+|.||||||...
T Consensus 145 v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 145 VKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp EEETTTEEEEESEEEE----SS
T ss_pred eeccCcccccCCEEEEecCCCC
Confidence 7775667999999999999764
No 100
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.77 E-value=3e-07 Score=93.10 Aligned_cols=116 Identities=21% Similarity=0.305 Sum_probs=71.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc----ccCCc-----------------------hhhhhh
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF----VFKPM-----------------------LYELLS 131 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~----~~~p~-----------------------~~~~~~ 131 (513)
+++|.|||||+.|+.+|.+|.+.-. ....|.|+|+.+.+ .|.+. +..++.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~---~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~ 77 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPR---PSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQ 77 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCC---CCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHH
Confidence 3689999999999999999998754 33349999998732 11111 111222
Q ss_pred cc----ccC------------Cc-----chHhHHHHhcCC---CeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCc
Q 010331 132 GE----VDA------------WE-----IAPRFADLLANT---GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG 187 (513)
Q Consensus 132 g~----~~~------------~~-----~~~~~~~~~~~~---~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g 187 (513)
+. .++ +. +...+..+++.. .+.+++.+++++....+. ....+...+|
T Consensus 78 ~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~---------~~~~~~~~~g 148 (474)
T COG4529 78 KQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNA---------GGYLVTTADG 148 (474)
T ss_pred hcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCC---------ceEEEecCCC
Confidence 21 000 10 111222223322 378888888887665321 1235777889
Q ss_pred eEEEecEEEEeCCCCCCCC
Q 010331 188 LIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 188 ~~i~yD~LVlAtGs~~~~~ 206 (513)
....+|-+|+|||..+.++
T Consensus 149 ~~~~ad~~Vlatgh~~~~~ 167 (474)
T COG4529 149 PSEIADIIVLATGHSAPPA 167 (474)
T ss_pred CeeeeeEEEEeccCCCCCc
Confidence 8889999999999765443
No 101
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.75 E-value=8.5e-08 Score=100.96 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=37.5
Q ss_pred CCCeEeCCCccccCCCCEEEEccccc-ccCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010331 368 RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAA 423 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~~p~VfaiGD~a~-~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~ 423 (513)
.|.|.||...|+ ..|++||+|+|+. ...-.+..-......+...|+.+++++...
T Consensus 310 ~GGi~vd~~~~t-~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 310 IGGISVDTFYRT-GIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred CCCEEECCCCcc-cCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 577999999997 8999999999974 211111111223445677788888888653
No 102
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.61 E-value=4.8e-07 Score=80.50 Aligned_cols=107 Identities=24% Similarity=0.294 Sum_probs=67.7
Q ss_pred EEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc---ccC------------------------Cchhhhhhccc-
Q 010331 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF---VFK------------------------PMLYELLSGEV- 134 (513)
Q Consensus 83 VIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~---~~~------------------------p~~~~~~~g~~- 134 (513)
+|||||++|++++.+|.+.. ......+|+|+|+++.- .|. +-+.+++....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-DPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 59999999999999999874 12367899999996621 111 11111111111
Q ss_pred ------cCCc----------chHhHHHHhcC--C--CeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecE
Q 010331 135 ------DAWE----------IAPRFADLLAN--T--GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194 (513)
Q Consensus 135 ------~~~~----------~~~~~~~~~~~--~--~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~ 194 (513)
.... +...+..+++. . .++++..+|++|+..+.. ..|.+.+|..+.||.
T Consensus 80 ~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~-----------~~v~~~~g~~~~~d~ 148 (156)
T PF13454_consen 80 DEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDG-----------YRVVTADGQSIRADA 148 (156)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCc-----------EEEEECCCCEEEeCE
Confidence 0001 11122222222 2 366777899999876541 357888999999999
Q ss_pred EEEeCCC
Q 010331 195 LVLSLGA 201 (513)
Q Consensus 195 LVlAtGs 201 (513)
||+|||.
T Consensus 149 VvLa~Gh 155 (156)
T PF13454_consen 149 VVLATGH 155 (156)
T ss_pred EEECCCC
Confidence 9999995
No 103
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.60 E-value=1e-06 Score=89.26 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=28.3
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+|+|||+|.|||++|..|.+ .++|+||.|.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~-------~~~V~vltk~~ 39 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP-------SFRVTVLTKGP 39 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC-------CCcEEEEeCCC
Confidence 89999999999999999986 36999999877
No 104
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.59 E-value=1.7e-07 Score=96.53 Aligned_cols=107 Identities=19% Similarity=0.244 Sum_probs=68.4
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCC-------ch-----hhhhh----c--------c---
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-------ML-----YELLS----G--------E--- 133 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p-------~~-----~~~~~----g--------~--- 133 (513)
||+|||||+||+++|..|++ .+++|+|||+++.....- .+ ..... + .
T Consensus 1 DviIiGaG~AGl~~A~~la~------~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR------PGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRK 74 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh------CCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchh
Confidence 69999999999999999997 466999999876332110 00 00000 0 0
Q ss_pred -------ccCCcchHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCC
Q 010331 134 -------VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203 (513)
Q Consensus 134 -------~~~~~~~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~ 203 (513)
++...+...+.+.+...+++++.++|..+..+... ...|.+++|.++++|+||.|+|...
T Consensus 75 ~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~----------~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 75 LGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVA----------LSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCc----------eeEEEeCCCCEEEeCEEEECCCCch
Confidence 00011122233344556888888888888654210 1246677777899999999999865
No 105
>PRK06847 hypothetical protein; Provisional
Probab=98.58 E-value=2.8e-07 Score=94.45 Aligned_cols=109 Identities=28% Similarity=0.316 Sum_probs=69.9
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccC-------C----------chhhhh-----------
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-------P----------MLYELL----------- 130 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~-------p----------~~~~~~----------- 130 (513)
.++|+|||||+||+++|..|++ .+++|+|+|+++..... | ++..+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~------~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 77 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR------AGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDL 77 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh------CCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEE
Confidence 5799999999999999999998 45699999987631100 0 000000
Q ss_pred ---hcc----cc---------C-------CcchHhHHHHhcCCCeEEEEE-eEEEEeCCCCcCcCCCceeeccceEecCC
Q 010331 131 ---SGE----VD---------A-------WEIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLES 186 (513)
Q Consensus 131 ---~g~----~~---------~-------~~~~~~~~~~~~~~~v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~ 186 (513)
.|. .+ + .++...+.+.+.+.+++++.+ +|+.++.+... ..+.+.+
T Consensus 78 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-----------~~v~~~~ 146 (375)
T PRK06847 78 FDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG-----------VTVTFSD 146 (375)
T ss_pred ECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-----------EEEEEcC
Confidence 000 00 0 112223344445568888876 88888654321 1466678
Q ss_pred ceEEEecEEEEeCCCCCC
Q 010331 187 GLIVEYDWLVLSLGAEPK 204 (513)
Q Consensus 187 g~~i~yD~LVlAtGs~~~ 204 (513)
|+++.+|.||.|+|....
T Consensus 147 g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 147 GTTGRYDLVVGADGLYSK 164 (375)
T ss_pred CCEEEcCEEEECcCCCcc
Confidence 888999999999997653
No 106
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.57 E-value=2.5e-07 Score=91.20 Aligned_cols=107 Identities=21% Similarity=0.231 Sum_probs=66.3
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCc----hh---hh-------------------hhc-
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM----LY---EL-------------------LSG- 132 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~----~~---~~-------------------~~g- 132 (513)
+||+|||||+||+++|..|++ .+++|+|||+.+....... .+ .. ..+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~------~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 74 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD------KGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGD 74 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCc
Confidence 489999999999999999998 4669999999864321100 00 00 000
Q ss_pred ------------cccCCcchHhHHHHhcCCCeEEEEE-eEEEEeCCCCcCcCCCceeeccceEecC-CceEEEecEEEEe
Q 010331 133 ------------EVDAWEIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLE-SGLIVEYDWLVLS 198 (513)
Q Consensus 133 ------------~~~~~~~~~~~~~~~~~~~v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~-~g~~i~yD~LVlA 198 (513)
..+...+...+.+.+++.+++++.+ +|+.+..++.. + .+.+. ++.++++|++|+|
T Consensus 75 ~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~------~-----~~~~~~~~~~~~a~~vv~a 143 (295)
T TIGR02032 75 SVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR------V-----VVIVRGGEGTVTAKIVIGA 143 (295)
T ss_pred EEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE------E-----EEEEcCccEEEEeCEEEEC
Confidence 0111122233445555678888765 77777544321 1 23322 3457999999999
Q ss_pred CCCCC
Q 010331 199 LGAEP 203 (513)
Q Consensus 199 tGs~~ 203 (513)
+|...
T Consensus 144 ~G~~s 148 (295)
T TIGR02032 144 DGSRS 148 (295)
T ss_pred CCcch
Confidence 99754
No 107
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=5.2e-07 Score=97.51 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..||||||||.||++||..+++.+ ++.+|+||||..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g----~g~~V~vleK~~ 38 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLD----PSLDVAVVAKTH 38 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhc----CCCcEEEEeccC
Confidence 368999999999999999998742 357999999976
No 108
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.54 E-value=1.8e-06 Score=88.01 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=34.0
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
+++||||||||.-|+++|++|.++. ++++|+|+|+.+..
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~----p~~~V~llEk~~~~ 40 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYE----PDLSVALLEKEDGV 40 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhC----CCceEEEEEccCcc
Confidence 3579999999999999999999963 56899999998743
No 109
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.54 E-value=1.4e-06 Score=88.20 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceE-EEecccccCCcceEEeeceE
Q 010331 262 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI-LELQPAIKGLESQIFEADLV 340 (513)
Q Consensus 262 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~i~aD~v 340 (513)
+..+.+.+.+.+++.|++++.+++|+++..++ +.+. +++. +++ +.+|.|
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-----------------------~~v~gv~~~------~g~-i~ad~v 195 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG-----------------------GRVTGVRTS------DGE-IRADRV 195 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEET-----------------------TEEEEEEET------TEE-EEECEE
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcc-----------------------ccccccccc------ccc-ccccee
Confidence 45666777788889999999999999998765 4454 5543 666 999999
Q ss_pred EEecCCCCC
Q 010331 341 LWTVGSKPL 349 (513)
Q Consensus 341 i~a~G~~p~ 349 (513)
|+|+|...+
T Consensus 196 V~a~G~~s~ 204 (358)
T PF01266_consen 196 VLAAGAWSP 204 (358)
T ss_dssp EE--GGGHH
T ss_pred Eecccccce
Confidence 999998754
No 110
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.53 E-value=3.8e-07 Score=94.04 Aligned_cols=36 Identities=33% Similarity=0.464 Sum_probs=31.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
....+|+|||||++|+++|..|++ .+++|+|||+.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~------~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALAD------AGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc------CCCEEEEEeCCC
Confidence 345799999999999999999998 456999999975
No 111
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.52 E-value=7.2e-07 Score=95.62 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
...||||||+|.||+.||..+++ .+.+|+||||.+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae------~G~~VilleK~~ 49 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARR------AGRRVLVVTKAA 49 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHH------cCCeEEEEEccC
Confidence 35799999999999999999988 456999999976
No 112
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.52 E-value=4.3e-07 Score=93.79 Aligned_cols=99 Identities=14% Similarity=0.237 Sum_probs=73.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|++. +.+|+||++.+..... .....+...+.+.+++.|++++.+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~------g~~Vtlv~~~~~~l~~----------~~~~~~~~~l~~~l~~~GV~i~~~~ 207 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQR------RCKVTVIELAATVMGR----------NAPPPVQRYLLQRHQQAGVRILLNN 207 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCcchhh----------hcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 46899999999999999999984 4599999997743211 011233344566667789999976
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~ 205 (513)
+++.++.+... .+.+.+|+++++|.||+|+|.+|+.
T Consensus 208 ~V~~i~~~~~~------------~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 208 AIEHVVDGEKV------------ELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred eeEEEEcCCEE------------EEEECCCCEEECCEEEECCCCChhh
Confidence 78888643221 3667788889999999999998863
No 113
>PLN02697 lycopene epsilon cyclase
Probab=98.51 E-value=4.4e-07 Score=95.98 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=68.9
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcc-----cCCch-----hhhhh------------cc--
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV-----FKPML-----YELLS------------GE-- 133 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~-----~~p~~-----~~~~~------------g~-- 133 (513)
..+||+|||||+||+++|..|++ .+++|+|||+...+. +...+ ...+. +.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak------~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~ 180 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAK------LGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPI 180 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHh------CCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCcee
Confidence 45899999999999999999998 566999999853211 00000 00000 00
Q ss_pred --------ccCCcchHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCC
Q 010331 134 --------VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203 (513)
Q Consensus 134 --------~~~~~~~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~ 203 (513)
++...+...+.+.+.+.|++++.++|+.|..+... + ..+.+.+|.++.+|.||.|+|...
T Consensus 181 ~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~------~----~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 181 MIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDG------L----RLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred eccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCc------E----EEEEEcCCcEEECCEEEECCCcCh
Confidence 00011112233334556899988899998654321 0 013456777899999999999865
No 114
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.50 E-value=1.8e-06 Score=91.63 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=38.5
Q ss_pred CCCeEeCCCccccCCCCEEEEccccc-ccCCCCC--CCCCchHHHHHHHHHHHHHHHHHH
Q 010331 368 RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGR--PLPATAQVAFQQADFAGWNLWAAI 424 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~~p~VfaiGD~a~-~~~~~g~--~~~~~a~~A~~qg~~~a~ni~~~l 424 (513)
.|.|.||...|+ ..||+||+|+|+. .. .|. .-......|.-.|+.+++++....
T Consensus 333 ~GGi~vd~~~~t-~I~GLyAaGE~a~~g~--hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 333 CGGISVDDHGRT-TVPGLYAIGEVACTGL--HGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred cCCEEECCCCcc-cCCCEEECcccccccc--CcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 577999999998 8999999999974 21 121 112234567788899999887653
No 115
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.50 E-value=4.8e-07 Score=70.65 Aligned_cols=70 Identities=29% Similarity=0.510 Sum_probs=54.8
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-eE
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD-RV 159 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~V 159 (513)
+|+|||||+.|+.+|..|++. +.+|+||++++.+. +.+ ..++...+.+.+++.|++++.+ .+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~~~~--~~~---------~~~~~~~~~~~l~~~gV~v~~~~~v 63 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSDRLL--PGF---------DPDAAKILEEYLRKRGVEVHTNTKV 63 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSSSSS--TTS---------SHHHHHHHHHHHHHTTEEEEESEEE
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccchhh--hhc---------CHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 699999999999999999985 45999999998544 221 1244566777888889999987 88
Q ss_pred EEEeCCCC
Q 010331 160 KLLCPSDH 167 (513)
Q Consensus 160 ~~id~~~~ 167 (513)
+.++.++.
T Consensus 64 ~~i~~~~~ 71 (80)
T PF00070_consen 64 KEIEKDGD 71 (80)
T ss_dssp EEEEEETT
T ss_pred EEEEEeCC
Confidence 88876543
No 116
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.49 E-value=9.4e-07 Score=95.44 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=41.3
Q ss_pred CCCCeEeCCCccccCCCCEEEEcccccccCCCCCC-C-CCchHHHHHHHHHHHHHHHHHHCC
Q 010331 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRP-L-PATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 367 ~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~-~-~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
..|.|.||.+.++ ..|++||+|||+... ..|.. + ......|.-.|+.+++++...+.+
T Consensus 357 t~GGi~vd~~~~t-~i~GLyAaGe~~~~g-~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~ 416 (582)
T PRK09231 357 TMGGIETDQNCET-RIKGLFAVGECSSVG-LHGANRLGSNSLAELVVFGRVAGEQAAERAAT 416 (582)
T ss_pred eCCCEEECCCCcc-ccCCEEecccccccc-cCCCCCcchhHHHHHHHHHHHHHHHHHHhhhc
Confidence 3577999999998 899999999997521 11211 1 223456778899999998876654
No 117
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.49 E-value=6.2e-07 Score=92.29 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
+..+|+|||||+||+++|..|++ .+++|+|+|+++.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~------~G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQ------SGLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHh------CCCeEEEEecCCC
Confidence 45799999999999999999998 4569999998764
No 118
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.49 E-value=1.1e-06 Score=95.36 Aligned_cols=45 Identities=18% Similarity=0.056 Sum_probs=36.2
Q ss_pred CCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 375 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 375 ~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
.+++| +.||+||+|||+... ...++..+..+|.+++.++...+..
T Consensus 389 ~~~~T-~v~glyA~Ge~~~~~------~~~l~~~s~~~g~~ag~~~~~~~~~ 433 (608)
T PRK06854 389 YNRMT-TVEGLFAAGDVVGGS------PHKFSSGSFAEGRIAAKAAVRYILD 433 (608)
T ss_pred ccccc-CCCCEEEeeecCCCC------cchhHHHHHHHHHHHHHHHHHHHHh
Confidence 88898 899999999997531 1456778888999999999877653
No 119
>PRK08275 putative oxidoreductase; Provisional
Probab=98.48 E-value=2.3e-06 Score=92.14 Aligned_cols=51 Identities=22% Similarity=0.181 Sum_probs=39.5
Q ss_pred CCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 368 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
.|.|.||..++| +.|++||+|||+... ......|.-.|+.++.++...+.+
T Consensus 356 ~Ggi~~d~~~~t-~i~gl~a~Ge~~~~~-------~~~~~~~~~~G~~a~~~~~~~~~~ 406 (554)
T PRK08275 356 ASGVWVNEKAET-TVPGLYAAGDMASVP-------HNYMLGAFTYGWFAGENAAEYVAG 406 (554)
T ss_pred cCcEEECCCCcc-CCCCEEECcccCCch-------hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367999999998 899999999997531 234456788899999888776544
No 120
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.48 E-value=4.1e-06 Score=88.16 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=35.9
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
.+++|+|||||.|||+||.+|.+.++ .++.+|+|+|+++....
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~--~~G~~VtIlEk~~~~GG 63 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQ--MPGENITILEELDVPGG 63 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccC--CCCCcEEEEeCCCCCCC
Confidence 35799999999999999999998543 36789999999885443
No 121
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.48 E-value=6.2e-07 Score=90.27 Aligned_cols=106 Identities=22% Similarity=0.315 Sum_probs=66.1
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeC-CCCccc---CCchhhh-----------h---------------
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQ-SERFVF---KPMLYEL-----------L--------------- 130 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~-~~~~~~---~p~~~~~-----------~--------------- 130 (513)
||+|||||+||++||..+++. +++|+|+.. .+.... .|.+... +
T Consensus 1 DViVVGgG~AG~eAA~aaAr~------G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~ 74 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM------GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHF 74 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhh
Confidence 799999999999999999995 559999943 231111 1111100 0
Q ss_pred ---------hc-----cccCCcchHhHHHHhcC-CCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEE
Q 010331 131 ---------SG-----EVDAWEIAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195 (513)
Q Consensus 131 ---------~g-----~~~~~~~~~~~~~~~~~-~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~L 195 (513)
.+ .++...+...+++.++. .++++++++|++|..++.. + .-|.+.+|..+.+|.+
T Consensus 75 ~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~------v----~GV~~~~g~~~~a~~v 144 (392)
T PF01134_consen 75 RMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGK------V----KGVVTKDGEEIEADAV 144 (392)
T ss_dssp EEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTE------E----EEEEETTSEEEEECEE
T ss_pred hcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCe------E----EEEEeCCCCEEecCEE
Confidence 00 01111233344555554 6899999999999765531 1 1377889999999999
Q ss_pred EEeCCCC
Q 010331 196 VLSLGAE 202 (513)
Q Consensus 196 VlAtGs~ 202 (513)
|+|||..
T Consensus 145 VlaTGtf 151 (392)
T PF01134_consen 145 VLATGTF 151 (392)
T ss_dssp EE-TTTG
T ss_pred EEecccc
Confidence 9999983
No 122
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.47 E-value=8.8e-07 Score=92.74 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=72.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|++. +.+|+|+++.+.+... ...++...+.+.+++.|++++.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~-----------~~~~~~~~~~~~l~~~GI~i~~~~ 219 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKL------GSKVTVLDAASTILPR-----------EEPSVAALAKQYMEEDGITFLLNA 219 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCccCCC-----------CCHHHHHHHHHHHHHcCCEEEcCC
Confidence 46899999999999999999884 4599999998744211 01133344556777889999976
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
+|+.|+.++.. + .+. .++.+++||.||+|+|.+|+..
T Consensus 220 ~V~~i~~~~~~------v-----~v~-~~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 220 HTTEVKNDGDQ------V-----LVV-TEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred EEEEEEecCCE------E-----EEE-ECCeEEEcCEEEEeeCCCCCcc
Confidence 88888754321 1 122 3456899999999999998754
No 123
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.46 E-value=1.3e-06 Score=94.45 Aligned_cols=56 Identities=20% Similarity=0.083 Sum_probs=39.3
Q ss_pred CCCeEeCCCcc----ccCCCCEEEEcccccccCCCCCC-C-CCchHHHHHHHHHHHHHHHHHHC
Q 010331 368 RGQAETDETLC----VKGHPRIFALGDSSALRDSSGRP-L-PATAQVAFQQADFAGWNLWAAIN 425 (513)
Q Consensus 368 ~G~i~Vd~~l~----~~~~p~VfaiGD~a~~~~~~g~~-~-~~~a~~A~~qg~~~a~ni~~~l~ 425 (513)
.|.|.||...| + ..|++||+|+|+..- ..|.. + ......|.-.|+.+++++...+.
T Consensus 342 ~GGi~id~~~~v~~~t-~I~GLyAaGe~a~~g-~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 342 MGGIPTDYTGRVICET-IVKGLFAAGECACVS-VHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred CCCeEECcCcccccCc-ccCCeeecccccccC-cCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 57788888877 5 799999999997521 11211 1 23455788889999999887654
No 124
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.46 E-value=8.9e-07 Score=90.82 Aligned_cols=100 Identities=25% Similarity=0.354 Sum_probs=75.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+. +.+|+++++.+...-. ..+.++...+.+.+++.+++++.+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~------g~~Vtlv~~~~~~l~~----------~~~~~~~~~l~~~l~~~gV~i~~~~ 204 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRA------GKAVTLVDNAASLLAS----------LMPPEVSSRLQHRLTEMGVHLLLKS 204 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhc------CCeEEEEecCCcccch----------hCCHHHHHHHHHHHHhCCCEEEECC
Confidence 46899999999999999999884 4599999998743210 111234455667777889999875
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~ 205 (513)
+++.++.+... ..+.+.+|+++++|.+|+|+|.+|+.
T Consensus 205 ~v~~i~~~~~~-----------~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 205 QLQGLEKTDSG-----------IRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred eEEEEEccCCE-----------EEEEEcCCcEEECCEEEECcCCCcch
Confidence 88888765421 14667788899999999999998763
No 125
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=2.7e-06 Score=91.35 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=40.7
Q ss_pred CCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 368 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
.|.|.||.+.|+ ..|++||+|+|+.........-......|.-.|+++++++...+.+
T Consensus 348 ~GGi~vd~~~~t-~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~~ 405 (543)
T PRK06263 348 MGGIRINEDCET-NIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAEN 405 (543)
T ss_pred cCCEEECCCCcc-cCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhhh
Confidence 477999999997 8999999999975321111111123446788899999999876644
No 126
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.45 E-value=1.1e-06 Score=91.76 Aligned_cols=98 Identities=22% Similarity=0.324 Sum_probs=73.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|++. +.+|++|++.+...... ...++...+.+.+++.||+++.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~~~~~----------~~~~~~~~~~~~l~~~gV~v~~~~ 200 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRER------GKNVTLIHRSERILNKL----------FDEEMNQIVEEELKKHEINLRLNE 200 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC------CCcEEEEECCcccCccc----------cCHHHHHHHHHHHHHcCCEEEeCC
Confidence 46899999999999999999984 44999999877432111 11234455667777889999975
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~ 205 (513)
.++.++.++. .+.+.+|.+++||.||+|+|.+++.
T Consensus 201 ~v~~i~~~~~-------------~v~~~~g~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 201 EVDSIEGEER-------------VKVFTSGGVYQADMVILATGIKPNS 235 (427)
T ss_pred EEEEEecCCC-------------EEEEcCCCEEEeCEEEECCCccCCH
Confidence 8888876543 1344567789999999999998764
No 127
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.45 E-value=7.7e-07 Score=92.19 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=30.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.++|+|||||++|+++|..|++ .+++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~------~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG------SGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc------CCCEEEEEcCCC
Confidence 4689999999999999999998 456999999875
No 128
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.45 E-value=7.9e-07 Score=92.91 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=33.1
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 75 ~~~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
...+++||+||||||||++||..|++ .+++|+|+|++.
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~------~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAK------GGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHh------CCCcEEEEecCC
Confidence 34567899999999999999999998 556999999875
No 129
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.44 E-value=7.6e-07 Score=92.15 Aligned_cols=110 Identities=26% Similarity=0.336 Sum_probs=69.1
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccC--C----chh-------------hhhh---------
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK--P----MLY-------------ELLS--------- 131 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~--p----~~~-------------~~~~--------- 131 (513)
++|+|||||++|+++|..|++.| .+++|+|||+.+..... + +.+ .+..
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g----~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 77 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAA----PHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMV 77 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCC----CCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEE
Confidence 68999999999999999999842 25799999997531100 0 000 0000
Q ss_pred ------------------cc----------ccCCcchHhHHHHhcCCCeEEEEE-eEEEEeCCCCcCcCCCceeeccceE
Q 010331 132 ------------------GE----------VDAWEIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTV 182 (513)
Q Consensus 132 ------------------g~----------~~~~~~~~~~~~~~~~~~v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~v 182 (513)
+. ++...+...+.+.+.+.+++++.+ +|++++.++.. ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-----------v~v 146 (403)
T PRK07333 78 ITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG-----------VTV 146 (403)
T ss_pred EEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-----------EEE
Confidence 00 000112223334445568888865 88888654431 146
Q ss_pred ecCCceEEEecEEEEeCCCCCC
Q 010331 183 LLESGLIVEYDWLVLSLGAEPK 204 (513)
Q Consensus 183 ~~~~g~~i~yD~LVlAtGs~~~ 204 (513)
.+++|.++.+|.||.|.|....
T Consensus 147 ~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 147 TLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred EECCCCEEEeCEEEEcCCCChH
Confidence 6677878999999999998654
No 130
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.43 E-value=1.1e-06 Score=93.18 Aligned_cols=109 Identities=23% Similarity=0.327 Sum_probs=69.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC-Cccc---CCch---------hh--hhhcc----------
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE-RFVF---KPML---------YE--LLSGE---------- 133 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~-~~~~---~p~~---------~~--~~~g~---------- 133 (513)
.+||||||||+||+.||..+++. +.+|+|||++. .... .|.. .+ .+.|.
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~------G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~gi 77 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARM------GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGI 77 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHc------CCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccC
Confidence 58999999999999999999994 55999999974 2211 1100 00 01000
Q ss_pred -------------------ccCCcchHhHHHHhcC-CCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEec
Q 010331 134 -------------------VDAWEIAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193 (513)
Q Consensus 134 -------------------~~~~~~~~~~~~~~~~-~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD 193 (513)
++...+...+.+.+.+ .++++++++|+.+..++. .+ ..|.+.+|..+.++
T Consensus 78 q~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~g------rV----~GV~t~dG~~I~Ak 147 (618)
T PRK05192 78 QFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENG------RV----VGVVTQDGLEFRAK 147 (618)
T ss_pred ceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCC------EE----EEEEECCCCEEECC
Confidence 0000112223333443 489999899988864432 11 12667788899999
Q ss_pred EEEEeCCCCC
Q 010331 194 WLVLSLGAEP 203 (513)
Q Consensus 194 ~LVlAtGs~~ 203 (513)
.+|+|||...
T Consensus 148 ~VIlATGTFL 157 (618)
T PRK05192 148 AVVLTTGTFL 157 (618)
T ss_pred EEEEeeCcch
Confidence 9999999754
No 131
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.42 E-value=1.5e-06 Score=89.94 Aligned_cols=102 Identities=26% Similarity=0.393 Sum_probs=77.6
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
.+++++|||||+.|+..|..++++|. +|||||+.+.+. + ...+++...+.+.+++.++++..+
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~------~VTiie~~~~iL---------p--~~D~ei~~~~~~~l~~~gv~i~~~ 234 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGS------KVTVVERGDRIL---------P--GEDPEISKELTKQLEKGGVKILLN 234 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC------cEEEEecCCCCC---------C--cCCHHHHHHHHHHHHhCCeEEEcc
Confidence 46789999999999999999999755 999999988432 1 123466777788888878999877
Q ss_pred -eEEEEeCCCCcCcCCCceeeccceEecCCce--EEEecEEEEeCCCCCCCCC
Q 010331 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESGL--IVEYDWLVLSLGAEPKLDV 207 (513)
Q Consensus 158 -~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~--~i~yD~LVlAtGs~~~~~~ 207 (513)
.++.+...+.. -.+.++++. ++++|++++|+|-+|+..+
T Consensus 235 ~~v~~~~~~~~~-----------v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 235 TKVTAVEKKDDG-----------VLVTLEDGEGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred ceEEEEEecCCe-----------EEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence 77777544320 146666664 7899999999999988654
No 132
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.41 E-value=1.5e-06 Score=91.81 Aligned_cols=100 Identities=27% Similarity=0.403 Sum_probs=72.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||++|+.+|..|++. +.+|+|||+.+... |. ...++...+.+.+++.|++++.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~------g~~Vtli~~~~~il--~~---------~~~~~~~~l~~~l~~~gI~i~~~~ 242 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADF------GVEVTVVEAADRIL--PT---------EDAELSKEVARLLKKLGVRVVTGA 242 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCeEEEEEecCccC--Cc---------CCHHHHHHHHHHHHhcCCEEEeCc
Confidence 47999999999999999999985 45999999987431 11 11234556667777889999987
Q ss_pred eEEEEeC--CCCcCcCCCceeeccceEecCCc--eEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCP--SDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~--~~~~~~~~~~v~~~~~~v~~~~g--~~i~yD~LVlAtGs~~~~~ 206 (513)
+|+.++. +++. . .+.+.+| ++++||.||+|+|.+|+..
T Consensus 243 ~v~~i~~~~~~~~-------~----~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 243 KVLGLTLKKDGGV-------L----IVAEHNGEEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred EEEEEEEecCCCE-------E----EEEEeCCceEEEEeCEEEEeeCCccCCC
Confidence 7888864 2221 0 1233445 4799999999999998754
No 133
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.41 E-value=2.1e-06 Score=93.52 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=39.8
Q ss_pred CCCeEeCCCccccCCCCEEEEcccccccCCCCC-CC-CCchHHHHHHHHHHHHHHHHHHCC
Q 010331 368 RGQAETDETLCVKGHPRIFALGDSSALRDSSGR-PL-PATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~-~~-~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
.|.|.||...+.++.||+||+|+|+... .|. .+ ......|.-.|+.+++++...+.+
T Consensus 391 ~GGi~vd~~~~~t~IpGLYAaGE~agg~--hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~ 449 (626)
T PRK07803 391 MGGVEVDPDTGAATVPGLFAAGECAGGM--HGSNRLGGNSLSDLLVFGRRAGLGAADYVRG 449 (626)
T ss_pred cCCEEEcCCCCeeecCCeeEcccccccc--CcCccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 4779999876544899999999997532 121 11 234456778899999988776543
No 134
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.40 E-value=1.8e-06 Score=89.71 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
.++|+|||||+||+++|..|++ .+++|+|||+.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~------~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD------SGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc------CCCEEEEEecCCc
Confidence 5799999999999999999998 4569999998763
No 135
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=2.7e-06 Score=91.73 Aligned_cols=59 Identities=10% Similarity=0.105 Sum_probs=40.5
Q ss_pred CCCeEeCCCccccCCCCEEEEcccccc-cCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 368 RGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~~p~VfaiGD~a~~-~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
.|.|.||.+.++++.|++||+|+|+.. ..-..+.-......+.-.|+.+++++...+++
T Consensus 346 ~GGi~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~ 405 (566)
T PRK06452 346 MGGIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLKS 405 (566)
T ss_pred cCCeEECCCCCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 577999988887459999999999752 11001111223456788899999998876643
No 136
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.40 E-value=1.3e-06 Score=89.96 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=29.4
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~ 117 (513)
+||+||||||||+++|+.|++ .+++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~------~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR------AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh------CCCcEEEEECC
Confidence 589999999999999999998 45699999997
No 137
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.40 E-value=1.2e-06 Score=89.64 Aligned_cols=109 Identities=23% Similarity=0.237 Sum_probs=69.5
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCC----------c--hhhhhhccccC------------
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP----------M--LYELLSGEVDA------------ 136 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p----------~--~~~~~~g~~~~------------ 136 (513)
||||||||+||+++|.+|.+. ..+.+|+|||+++...+.. . +.......+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~----~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~ 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADA----RPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhc----CCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEE
Confidence 699999999999999999442 2678999999866331111 0 11111111000
Q ss_pred ----------CcchHhHHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCC
Q 010331 137 ----------WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204 (513)
Q Consensus 137 ----------~~~~~~~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~ 204 (513)
..+...+.+.+...++.++.+.|++|+..... ..|.+++|.++.++.||-|.|....
T Consensus 77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~-----------~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 77 IDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDG-----------VLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred cccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCce-----------EEEEECCCCEEEeeEEEECCCcccc
Confidence 01111223333345777888899999776541 2477888889999999999996543
No 138
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.40 E-value=1.7e-06 Score=91.02 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=33.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 76 ~~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
....+||||||||..|+++|++|++.+ +..+|+|||+.+
T Consensus 42 ~~~~~DVvIIGGGI~G~a~A~~La~~~----~~~~V~VlEk~~ 80 (497)
T PTZ00383 42 GSDVYDVVIVGGGVTGTALFYTLSKFT----NLKKIALIERRS 80 (497)
T ss_pred cCCcccEEEECccHHHHHHHHHHHhhC----CCCEEEEEecCc
Confidence 345689999999999999999999842 346999999986
No 139
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.39 E-value=1.2e-06 Score=92.22 Aligned_cols=38 Identities=32% Similarity=0.702 Sum_probs=32.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
....||+|||||+.|+++|++|++. .++.+|+|+|++.
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~----~~G~~V~vlE~~~ 59 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQ----RPALDVLVLEADL 59 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHh----CCCCeEEEEeCCc
Confidence 4457999999999999999999984 1367999999865
No 140
>PLN02661 Putative thiazole synthesis
Probab=98.39 E-value=1.8e-05 Score=78.66 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
...||+|||||++|+.||+.|++. ++++|+|||++...
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~~~~ 128 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQSVSP 128 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecCccc
Confidence 357999999999999999999972 46799999997643
No 141
>PRK06184 hypothetical protein; Provisional
Probab=98.39 E-value=1.8e-06 Score=92.00 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+||||||+|+++|..|++ .+++|+|||+.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~------~Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR------RGVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCC
Confidence 4789999999999999999999 456999999976
No 142
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.39 E-value=1.4e-06 Score=90.87 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
++||+||||||||++||..|++ .+++|+|||+.++
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~------~G~~V~llEr~~~ 39 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAR------EGAQVLVIERGNS 39 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHh------CCCeEEEEEcCCC
Confidence 5899999999999999999998 4569999999764
No 143
>PRK06834 hypothetical protein; Provisional
Probab=98.38 E-value=1.7e-06 Score=91.55 Aligned_cols=109 Identities=23% Similarity=0.301 Sum_probs=68.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc-CC----chh-------------hhhh--------c
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF-KP----MLY-------------ELLS--------G 132 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~-~p----~~~-------------~~~~--------g 132 (513)
..+|+||||||+|+++|..|++ .+++|+|||+.+.... .+ +.+ .+.. +
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~------~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~ 76 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL------AGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTG 76 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccce
Confidence 3799999999999999999998 4569999998752110 00 000 0000 0
Q ss_pred ----cccCC---------------cchHhHHHHhcCCCeEEEEE-eEEEEeCCCCcCcCCCceeeccceEecCCceEEEe
Q 010331 133 ----EVDAW---------------EIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192 (513)
Q Consensus 133 ----~~~~~---------------~~~~~~~~~~~~~~v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~y 192 (513)
..+.. .+..-+.+.+++.+++++.+ +++++..++.. ..+.+.+|.++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-----------v~v~~~~g~~i~a 145 (488)
T PRK06834 77 FAATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-----------VDVELSDGRTLRA 145 (488)
T ss_pred eeeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-----------EEEEECCCCEEEe
Confidence 00000 01112233345568888876 88888654321 1355566778999
Q ss_pred cEEEEeCCCCCC
Q 010331 193 DWLVLSLGAEPK 204 (513)
Q Consensus 193 D~LVlAtGs~~~ 204 (513)
|+||.|.|....
T Consensus 146 ~~vVgADG~~S~ 157 (488)
T PRK06834 146 QYLVGCDGGRSL 157 (488)
T ss_pred CEEEEecCCCCC
Confidence 999999998764
No 144
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.37 E-value=3.5e-06 Score=95.62 Aligned_cols=51 Identities=22% Similarity=0.220 Sum_probs=40.4
Q ss_pred CCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHC
Q 010331 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425 (513)
Q Consensus 367 ~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~ 425 (513)
..|.|.||.+.+| +.||+||+|||+... ......+.-.|+.++.++...+.
T Consensus 360 ~~GGi~vd~~~~T-~v~GLfAaGE~a~~~-------~nsl~~a~v~G~~Ag~~a~~~~~ 410 (897)
T PRK13800 360 SASGVWVDEHART-TVPGLYAAGDLACVP-------HNYMIGAFVFGDLAGAHAAGTLA 410 (897)
T ss_pred CcceEEecCCCcc-cCCCeEechhccCcc-------hhhhhhHHHhHHHHHHHHHHHHh
Confidence 3588999999998 899999999997642 24455678889999988877654
No 145
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.36 E-value=2.5e-06 Score=92.35 Aligned_cols=57 Identities=19% Similarity=0.130 Sum_probs=39.2
Q ss_pred CCCeEeCCCccccC-----CCCEEEEcccccccCCCCCC-C-CCchHHHHHHHHHHHHHHHHHHC
Q 010331 368 RGQAETDETLCVKG-----HPRIFALGDSSALRDSSGRP-L-PATAQVAFQQADFAGWNLWAAIN 425 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~-----~p~VfaiGD~a~~~~~~g~~-~-~~~a~~A~~qg~~~a~ni~~~l~ 425 (513)
.|.|.||.+.|+.+ .||+||+|+|+..- ..|.. + ......|.-.|+.+++++...+.
T Consensus 352 ~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g-~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~ 415 (577)
T PRK06069 352 MGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVS-VHGANRLGSNSTAECLVWGRIAGEQAAEYAL 415 (577)
T ss_pred CCCceECCCCcCcCCCCCEeCCeEecccccccc-ccccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 57789998888832 89999999997520 11211 1 12345678889999999877654
No 146
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.36 E-value=2.1e-06 Score=90.55 Aligned_cols=100 Identities=21% Similarity=0.371 Sum_probs=73.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+. +.+|+|+|+.+... |. ...++...+.+.+++.+++++.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l--~~---------~~~~~~~~~~~~l~~~gi~i~~~~ 232 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASL------GSKVTVIEMLDRIL--PG---------EDAEVSKVVAKALKKKGVKILTNT 232 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCCCCC--CC---------CCHHHHHHHHHHHHHcCCEEEeCC
Confidence 46899999999999999999985 44999999987432 11 11234445566777889999987
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCc--eEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g--~~i~yD~LVlAtGs~~~~~ 206 (513)
+|+.|+.+++. + .+.+.+| .++++|.||+|+|..|+..
T Consensus 233 ~v~~i~~~~~~------v-----~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 233 KVTAVEKNDDQ------V-----VYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEEEEEEeCCE------E-----EEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 88888654321 1 2344455 5799999999999998754
No 147
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.36 E-value=2.1e-06 Score=90.50 Aligned_cols=101 Identities=26% Similarity=0.421 Sum_probs=74.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|++. +.+|+||++.+... |. ...++...+.+.+++.+++++.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l--~~---------~~~~~~~~l~~~l~~~gV~i~~~~ 234 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASL------GAEVTIVEALPRIL--PG---------EDKEISKLAERALKKRGIKIKTGA 234 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCCcC--Cc---------CCHHHHHHHHHHHHHcCCEEEeCC
Confidence 46899999999999999999884 45999999987432 11 11244556667777889999987
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCc---eEEEecEEEEeCCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG---LIVEYDWLVLSLGAEPKLDV 207 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g---~~i~yD~LVlAtGs~~~~~~ 207 (513)
+|+.|+.+++. + .+.+.++ ++++||.||+|+|.+|+...
T Consensus 235 ~V~~i~~~~~~------v-----~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 235 KAKKVEQTDDG------V-----TVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEEEEEEeCCE------E-----EEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 88888765421 1 2444444 67999999999999987543
No 148
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.36 E-value=2.8e-06 Score=90.48 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=37.5
Q ss_pred CCCeEeCCCccccCCCCEEEEcccccccCCCCC--CCCCchHHHHHHHHHHHHHHHHHH
Q 010331 368 RGQAETDETLCVKGHPRIFALGDSSALRDSSGR--PLPATAQVAFQQADFAGWNLWAAI 424 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~--~~~~~a~~A~~qg~~~a~ni~~~l 424 (513)
.|.|.||.+.++ +.|++||+|+|+.. ...|. ........+.-.|+.+++++....
T Consensus 332 ~GGi~vd~~~~t-~I~GLyAaGE~a~~-g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 388 (510)
T PRK08071 332 MGGVKTNLDGET-SIPGLYAIGEVACT-GVHGANRLASNSLLEGLVFGKRAAEHILTKA 388 (510)
T ss_pred cCCEEECCCCcc-cCCCeEEccccccc-ccCCCcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 477999999997 89999999999742 01121 112234566777888888886543
No 149
>PRK10015 oxidoreductase; Provisional
Probab=98.36 E-value=1.9e-06 Score=89.71 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
++||+||||||||++||+.|++ .+++|+|||+.++
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~------~G~~VlliEr~~~ 39 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMAR------AGLDVLVIERGDS 39 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHh------CCCeEEEEecCCC
Confidence 5899999999999999999998 4569999998764
No 150
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.36 E-value=6.4e-06 Score=83.22 Aligned_cols=39 Identities=26% Similarity=0.294 Sum_probs=31.4
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p 124 (513)
.+|+|||||+||+++|..|++. +++|+|||+++.....+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~~~~~~~ 40 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA------GIDVTIIERRPDPRPKG 40 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT------TCEEEEEESSSSCCCSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc------ccccccchhcccccccc
Confidence 5899999999999999999994 55999999988654443
No 151
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.35 E-value=2.1e-06 Score=88.49 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..++|+|||||++|+++|..|++ .+++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~------~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ------HGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc------CCCEEEEEcCCC
Confidence 34799999999999999999998 456999999875
No 152
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.33 E-value=2.2e-05 Score=80.43 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=41.5
Q ss_pred CCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCCCCCc
Q 010331 374 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPF 432 (513)
Q Consensus 374 d~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~~~~f 432 (513)
+++|+++..||+|.+|-.+.. .-...|..||-+++-|+...+.|+++..+
T Consensus 321 ~~~l~~k~~~~lf~AGQi~G~---------~GY~Eaaa~Gl~agina~~~~~~~~~~~~ 370 (433)
T TIGR00137 321 TASLHFKDRQTLFFAGQLTGV---------EGYVASTAGGWLAGINAARLALGEPLLTL 370 (433)
T ss_pred hHHhccCCCCCEEECcccccc---------hHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 567899889999999998875 34568899999999999999999875433
No 153
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.33 E-value=1.5e-06 Score=89.66 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=33.4
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
+++|||||||||||++||+.|++ .+++|+|+|+++...+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~------~G~~VlvlEk~~~~G~ 40 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK------AGLDVLVLEKGSEPGA 40 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH------cCCeEEEEecCCCCCC
Confidence 46899999999999999999999 4579999999774433
No 154
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.33 E-value=2.5e-06 Score=88.14 Aligned_cols=35 Identities=37% Similarity=0.612 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
..+|+|||||++|+++|..|++ .+++|+|+|+.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~------~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR------QGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh------CCCcEEEEeeCcc
Confidence 4789999999999999999998 4569999999763
No 155
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.33 E-value=3.8e-06 Score=90.65 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=39.5
Q ss_pred CCCeEeCCCccccCCCCEEEEcccccccCCCCCC-C-CCchHHHHHHHHHHHHHHHHHHC
Q 010331 368 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRP-L-PATAQVAFQQADFAGWNLWAAIN 425 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~-~-~~~a~~A~~qg~~~a~ni~~~l~ 425 (513)
.|.|.+|...++ +.|++||+|+|+... ..|.. + ......|.-.|+.+++++.....
T Consensus 357 ~GGi~~d~~~~t-~i~GLyAaGe~a~~G-~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~ 414 (580)
T TIGR01176 357 MGGIETDINCET-RIKGLFAVGECASVG-LHGANRLGSNSLAELVVFGRRAGEAAAERAA 414 (580)
T ss_pred CCCeeECcCccc-ccCCeEeeecccccC-cCCCccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 577999999998 899999999997421 11111 1 12345678889999999887654
No 156
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.33 E-value=7.5e-06 Score=87.77 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=39.7
Q ss_pred CCCeEeCCCccccCCCCEEEEcccccccCCCCCC--CCCchHHHHHHHHHHHHHHHHHHC
Q 010331 368 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRP--LPATAQVAFQQADFAGWNLWAAIN 425 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~--~~~~a~~A~~qg~~~a~ni~~~l~ 425 (513)
.|.|.||.+.|+ +.|++||+|+|+.. ...|.. -......|.-.|+.+++++.....
T Consensus 353 ~GGi~vd~~~~t-~I~GLyAaGE~a~~-g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~ 410 (536)
T PRK09077 353 CGGVMVDLHGRT-DLDGLYAIGEVSYT-GLHGANRMASNSLLECLVYGRSAAEDILSRLP 410 (536)
T ss_pred cCCeeECCCCcc-ccCCEEeccccccc-ccCCCccchhhhHHHHHHHHHHHHHHHHHhhc
Confidence 477999999998 89999999999742 011211 123445677889999999987643
No 157
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.32 E-value=3.5e-06 Score=81.02 Aligned_cols=117 Identities=21% Similarity=0.228 Sum_probs=66.9
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCC--------------chhhhhhc---cc-------
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP--------------MLYELLSG---EV------- 134 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p--------------~~~~~~~g---~~------- 134 (513)
.+||+|||||+||++||+.|++ .+.+|+|||+++...... ...+++.. .+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~------~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~ 94 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAK------NGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGY 94 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCce
Confidence 5799999999999999999998 456999999987532110 00111110 00
Q ss_pred ---cCCcchHhHHHHhcCCCeEEEEE-eEEEEeCCCCcCcCCCceeeccceEecC----CceEEEecEEEEeCCCC
Q 010331 135 ---DAWEIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLE----SGLIVEYDWLVLSLGAE 202 (513)
Q Consensus 135 ---~~~~~~~~~~~~~~~~~v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~----~g~~i~yD~LVlAtGs~ 202 (513)
+..++...+.+...+.+++++.+ .|+++..++.. .....+.+....+..+ +...++++.+|.|||..
T Consensus 95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~-~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDT-VGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCC-CceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 01122333444445678998876 78887653320 0011111100001111 23578999999999965
No 158
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=5.7e-06 Score=89.57 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=29.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..||||||||.||++||..+++ . .+|+|+||..
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~------~-~~VilleK~~ 37 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP------R-ARTAVLTKLY 37 (583)
T ss_pred eccEEEECccHHHHHHHHHHHh------C-CCEEEEeCCC
Confidence 4689999999999999999986 3 5999999965
No 159
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.32 E-value=3.3e-06 Score=88.87 Aligned_cols=100 Identities=25% Similarity=0.379 Sum_probs=71.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+. +.+|+|+++.+.... + ...++...+.+.+++.|++++.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~~ll~---------~--~d~e~~~~l~~~L~~~GI~i~~~~ 232 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRL------GTKVTIVEMAPQLLP---------G--EDEDIAHILREKLENDGVKIFTGA 232 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCcCc---------c--ccHHHHHHHHHHHHHCCCEEEECC
Confidence 46899999999999999999884 459999999874321 0 11234556667777889999986
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCc-eEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g-~~i~yD~LVlAtGs~~~~~ 206 (513)
+|+.++.+... + .+..++. .+++||.||+|+|.+|+..
T Consensus 233 ~V~~i~~~~~~------v-----~~~~~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 233 ALKGLNSYKKQ------A-----LFEYEGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred EEEEEEEcCCE------E-----EEEECCceEEEEeCEEEEecCCccCCC
Confidence 78888754431 1 1222222 3799999999999988754
No 160
>PRK07190 hypothetical protein; Provisional
Probab=98.32 E-value=3.1e-06 Score=89.46 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+||||||+|+++|..|++ .+++|+|||+.+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar------~Gi~V~llEr~~ 38 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL------CGLNTVIVDKSD 38 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH------cCCCEEEEeCCC
Confidence 4799999999999999999998 456999999976
No 161
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.31 E-value=2.5e-06 Score=87.84 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.++|+|||||++|+++|..|++ .+++|+|||+.+
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~------~G~~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR------AGASVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc------CCCeEEEEeCCC
Confidence 4689999999999999999998 456999999975
No 162
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.31 E-value=2.5e-06 Score=87.80 Aligned_cols=108 Identities=24% Similarity=0.253 Sum_probs=68.7
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC-Cccc-------CC---------ch-hhhhh---------
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE-RFVF-------KP---------ML-YELLS--------- 131 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~-~~~~-------~p---------~~-~~~~~--------- 131 (513)
..+|+|||||++|+++|..|++ .+++|+|||+.+ .+.- .+ .+ ..+..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~------~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~ 75 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR------AGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVM 75 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh------CCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeE
Confidence 4789999999999999999999 456999999982 1100 00 00 00000
Q ss_pred ----cc-------------------ccCCcchHhHHHHhcCC-CeEEEEE-eEEEEeCCCCcCcCCCceeeccceEecC-
Q 010331 132 ----GE-------------------VDAWEIAPRFADLLANT-GVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLE- 185 (513)
Q Consensus 132 ----g~-------------------~~~~~~~~~~~~~~~~~-~v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~- 185 (513)
+. +.-.++...+.+.+... +++++.+ +|+.++.++.. -.++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-----------v~v~l~~ 144 (387)
T COG0654 76 VVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG-----------VTVTLSF 144 (387)
T ss_pred EEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc-----------eEEEEcC
Confidence 00 00011233344444443 4898885 88888766431 135666
Q ss_pred CceEEEecEEEEeCCCCC
Q 010331 186 SGLIVEYDWLVLSLGAEP 203 (513)
Q Consensus 186 ~g~~i~yD~LVlAtGs~~ 203 (513)
+|+++++|.||-|=|...
T Consensus 145 dG~~~~a~llVgADG~~S 162 (387)
T COG0654 145 DGETLDADLLVGADGANS 162 (387)
T ss_pred CCcEEecCEEEECCCCch
Confidence 888999999999999653
No 163
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.31 E-value=2.4e-06 Score=87.76 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=29.8
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
+|+|||||+||+++|..|++ .+++|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~------~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR------SGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc------CCCEEEEEeCCCc
Confidence 69999999999999999998 4569999999864
No 164
>PRK09126 hypothetical protein; Provisional
Probab=98.31 E-value=2.6e-06 Score=87.83 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
+.+|+|||||++|+++|..|++ .+++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~------~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG------SGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh------CCCcEEEEeCCCc
Confidence 5789999999999999999998 4569999999763
No 165
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.29 E-value=2.8e-06 Score=87.64 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+.||+|||||.+|+++|++|++. .++.+|+|+|+++
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~----~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQER----YPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHh----CCCCeEEEEeCCC
Confidence 47999999999999999999984 1366999999974
No 166
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.29 E-value=3.2e-06 Score=88.42 Aligned_cols=96 Identities=16% Similarity=0.285 Sum_probs=73.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|++. +.+|+||++.+... +. ...++...+.+.+++.|++++.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~------g~~Vtli~~~~~l~--~~---------~d~~~~~~l~~~l~~~gI~i~~~~ 210 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYER------GLHPTLIHRSDKIN--KL---------MDADMNQPILDELDKREIPYRLNE 210 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCcEEEEecccccc--hh---------cCHHHHHHHHHHHHhcCCEEEECC
Confidence 46899999999999999999985 44999999987432 11 11244556677788889999975
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
+|+.++.. .+.+++|+++++|.+++|+|.+|+..
T Consensus 211 ~v~~i~~~---------------~v~~~~g~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 211 EIDAINGN---------------EVTFKSGKVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred eEEEEeCC---------------EEEECCCCEEEeCEEEECcCCCcChH
Confidence 78888531 36666777899999999999998743
No 167
>PRK07236 hypothetical protein; Provisional
Probab=98.29 E-value=4.2e-06 Score=86.10 Aligned_cols=36 Identities=33% Similarity=0.600 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
+..+|+|||||++|+++|..|++ .+++|+|+|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~------~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR------AGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh------CCCCEEEEecCCC
Confidence 35799999999999999999998 4569999999763
No 168
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.29 E-value=4.3e-06 Score=87.72 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=73.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|++.+ .+|+|+++.+... +. ...++...+.+.+++.|++++.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G------~~Vtli~~~~~~l--~~---------~d~~~~~~l~~~l~~~gV~i~~~~ 228 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLG------VQVTLIYRGELIL--RG---------FDDDMRALLARNMEGRGIRIHPQT 228 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcC------CeEEEEEeCCCCC--cc---------cCHHHHHHHHHHHHHCCCEEEeCC
Confidence 468999999999999999998854 4999999877431 10 11234455666777889999986
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
+|+.++..+.. ..+.+.+++++++|.||+|+|.+|+..
T Consensus 229 ~v~~i~~~~~~-----------~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 229 SLTSITKTDDG-----------LKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred EEEEEEEcCCe-----------EEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 78888643220 135566777899999999999988754
No 169
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.29 E-value=2.6e-06 Score=87.51 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=29.5
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCC-CeEEEEeCCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSER 119 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~-~~V~lIe~~~~ 119 (513)
||+|||||+||+++|..|++ .+ ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~------~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR------LGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhc------CCCceEEEEeCCCc
Confidence 69999999999999999998 45 69999998753
No 170
>PRK06126 hypothetical protein; Provisional
Probab=98.28 E-value=1.4e-05 Score=86.15 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
....+|+|||||++|+++|..|++. +++|+|||+.+..
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~------G~~v~viEr~~~~ 42 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRR------GVDSILVERKDGT 42 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCC
Confidence 3457999999999999999999994 5699999998743
No 171
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.28 E-value=3e-06 Score=87.44 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=29.7
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.||+||||||||++||..|++ .+++|+|||+.+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~------~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS------AGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh------CCCcEEEEecCC
Confidence 489999999999999999998 456999999875
No 172
>PRK08244 hypothetical protein; Provisional
Probab=98.28 E-value=4.4e-06 Score=88.91 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.++|+||||||+|+++|..|++ .+++|+|||+.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~------~G~~v~viEr~~ 35 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL------AGVKTCVIERLK 35 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCC
Confidence 4789999999999999999998 456999999876
No 173
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=4.8e-06 Score=85.22 Aligned_cols=110 Identities=20% Similarity=0.283 Sum_probs=69.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC-ccc---CCchhh-----------hhhc-----------
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER-FVF---KPMLYE-----------LLSG----------- 132 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~-~~~---~p~~~~-----------~~~g----------- 132 (513)
.++|+|||||.||+.||...+|.| .+++|+--+.. ... .|..-. .+.|
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG------~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~I 77 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMG------AKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGI 77 (621)
T ss_pred CCceEEECCCccchHHHHhhhccC------CeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCC
Confidence 389999999999999999999965 48888865431 111 111100 0001
Q ss_pred ------------------cccCCcchHhHHHHhcC-CCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEec
Q 010331 133 ------------------EVDAWEIAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193 (513)
Q Consensus 133 ------------------~~~~~~~~~~~~~~~~~-~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD 193 (513)
+.+...+...+++.++. .++.++++.|+++..++.. .+ .-|.+.+|..+.++
T Consensus 78 Q~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~-----~v----~GV~t~~G~~~~a~ 148 (621)
T COG0445 78 QFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQ-----RV----VGVVTADGPEFHAK 148 (621)
T ss_pred chhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCC-----eE----EEEEeCCCCeeecC
Confidence 00101122233333433 4899999999988654320 01 13788899999999
Q ss_pred EEEEeCCCCC
Q 010331 194 WLVLSLGAEP 203 (513)
Q Consensus 194 ~LVlAtGs~~ 203 (513)
.|||+||.-.
T Consensus 149 aVVlTTGTFL 158 (621)
T COG0445 149 AVVLTTGTFL 158 (621)
T ss_pred EEEEeecccc
Confidence 9999999754
No 174
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.27 E-value=9.7e-06 Score=88.64 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=40.1
Q ss_pred CCCeEeCCCccccCCCCEEEEcccccccCCCCCC-C-CCchHHHHHHHHHHHHHHHHHHCC
Q 010331 368 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRP-L-PATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~-~-~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
.|.|.||.+.++...|++||+|+|+.. ...|.. + ......+.-.|+++++++...+.+
T Consensus 372 mGGi~vd~~~~t~~I~GLyAaGE~a~~-g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~ 431 (657)
T PRK08626 372 MGGIRTNPTGESYGLKGLFSAGEAACW-DMHGFNRLGGNSLAETVVAGMIVGKYVADFCLG 431 (657)
T ss_pred cCCceECCCCCCcccCCEEeccccccc-CCCCCCccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467999998898559999999999752 111211 1 123356777899999988876543
No 175
>PRK06116 glutathione reductase; Validated
Probab=98.27 E-value=5e-06 Score=87.36 Aligned_cols=101 Identities=20% Similarity=0.269 Sum_probs=75.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+. +.+|+++++++.+. +. ...++...+.+.+++.|++++.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~------g~~Vtlv~~~~~~l--~~---------~~~~~~~~l~~~L~~~GV~i~~~~ 229 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGL------GSETHLFVRGDAPL--RG---------FDPDIRETLVEEMEKKGIRLHTNA 229 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCc--cc---------cCHHHHHHHHHHHHHCCcEEECCC
Confidence 47999999999999999999985 44999999877431 11 11234556667777889999976
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
+|..++.+++. . ..+.+.+|+++++|.+|+|+|.+|+..
T Consensus 230 ~V~~i~~~~~g-----~-----~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 230 VPKAVEKNADG-----S-----LTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred EEEEEEEcCCc-----e-----EEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 88888654320 0 135666777899999999999988754
No 176
>PRK07045 putative monooxygenase; Reviewed
Probab=98.26 E-value=5.1e-06 Score=85.57 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
.+.+|+|||||+||+++|..|++ .+++|+|+|+.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~------~G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA------RGHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh------cCCcEEEEeCCCc
Confidence 34799999999999999999998 4569999998773
No 177
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.25 E-value=5.3e-06 Score=87.76 Aligned_cols=100 Identities=19% Similarity=0.319 Sum_probs=72.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|++.+ .+|+||++.+.+. +. ...++...+.+.+++.|++++.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g------~~Vtli~~~~~~l--~~---------~d~~~~~~~~~~l~~~gi~i~~~~ 245 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLG------AEVTILEALPAFL--AA---------ADEQVAKEAAKAFTKQGLDIHLGV 245 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC------CeEEEEeCCCccC--Cc---------CCHHHHHHHHHHHHHcCcEEEeCc
Confidence 479999999999999999999854 4999999987432 11 11234455566677789999986
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCC--c--eEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLES--G--LIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~--g--~~i~yD~LVlAtGs~~~~~ 206 (513)
+|+.++.++.. + .+.+.+ | .++++|.|++|+|.+|+..
T Consensus 246 ~v~~i~~~~~~------v-----~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 246 KIGEIKTGGKG------V-----SVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred EEEEEEEcCCE------E-----EEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 88888755321 1 233222 3 4799999999999998754
No 178
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.25 E-value=4.1e-06 Score=86.41 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=30.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~ 117 (513)
+.+|+|||||+||+++|..|++... .+++|+|||+.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~---~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSH---GGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhccc---CCCEEEEEeCC
Confidence 4799999999999999999998411 26799999994
No 179
>PRK09897 hypothetical protein; Provisional
Probab=98.25 E-value=8.5e-06 Score=86.36 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
++|+|||||++|+++|.+|.+. ...++|+|||++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~----~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ----QTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc----CCCCcEEEEecCC
Confidence 6899999999999999999874 2457999999965
No 180
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.24 E-value=6.2e-06 Score=86.97 Aligned_cols=100 Identities=24% Similarity=0.270 Sum_probs=74.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|++.+ .+|+||++.+... +. ...++...+.+.+++.+++++.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g------~~Vtli~~~~~~l--~~---------~d~~~~~~l~~~l~~~gI~v~~~~ 237 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALG------VKVTLINTRDRLL--SF---------LDDEISDALSYHLRDSGVTIRHNE 237 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC------CeEEEEecCCCcC--Cc---------CCHHHHHHHHHHHHHcCCEEEECC
Confidence 479999999999999999999854 4999999987331 10 11234556666777889999976
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
.|+.++.++.. ..+.+.+|.++++|.+|+|+|.+|+..
T Consensus 238 ~v~~i~~~~~~-----------~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 238 EVEKVEGGDDG-----------VIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred EEEEEEEeCCe-----------EEEEECCCCEEEeCEEEEeecCCcccc
Confidence 88888643320 135556777899999999999998754
No 181
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.24 E-value=5.7e-06 Score=86.81 Aligned_cols=99 Identities=25% Similarity=0.374 Sum_probs=71.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|||||||+.|+.+|..|.+. +.+|+++++.+...... . ..++...+.+.+++.|++++.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~~---------~-~~~~~~~l~~~l~~~gI~v~~~~ 212 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHL------GKNVRIIQLEDRILPDS---------F-DKEITDVMEEELRENGVELHLNE 212 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc------CCcEEEEeCCcccCchh---------c-CHHHHHHHHHHHHHCCCEEEcCC
Confidence 47899999999999999999885 44999999877432100 0 1244556667777889999876
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~ 205 (513)
+++.++.+++. ..+.++++ ++++|.+|+|+|..|+.
T Consensus 213 ~v~~i~~~~~~-----------~~v~~~~~-~i~~d~vi~a~G~~p~~ 248 (444)
T PRK09564 213 FVKSLIGEDKV-----------EGVVTDKG-EYEADVVIVATGVKPNT 248 (444)
T ss_pred EEEEEecCCcE-----------EEEEeCCC-EEEcCEEEECcCCCcCH
Confidence 88888654331 02344444 79999999999988763
No 182
>PRK05868 hypothetical protein; Validated
Probab=98.24 E-value=6.6e-06 Score=84.19 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=30.1
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
++|+|||||++|+++|..|++ .+++|+|||+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~------~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR------HGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh------CCCCEEEEcCCC
Confidence 689999999999999999998 456999999876
No 183
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.23 E-value=6.9e-05 Score=79.10 Aligned_cols=35 Identities=14% Similarity=0.346 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.||||||||.+|+++|+.|+++ .++.+|+|+|+.+
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~----~~g~~V~VlEk~~ 35 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLREL----EPNWSITLIERLD 35 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHh----CCCCeEEEEEcCC
Confidence 4799999999999999999984 2567999999965
No 184
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.23 E-value=6.2e-06 Score=83.22 Aligned_cols=106 Identities=25% Similarity=0.348 Sum_probs=81.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
..+||++|||+.|+.+|..|.. ...+||+|++.+... +. .-..++...+.+++++.+++|+.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~------~~~~VT~V~~e~~~~-----~~-----lf~~~i~~~~~~y~e~kgVk~~~~t 276 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVS------KAKSVTVVFPEPWLL-----PR-----LFGPSIGQFYEDYYENKGVKFYLGT 276 (478)
T ss_pred CceEEEECchHHHHHHHHHHHh------cCceEEEEccCccch-----hh-----hhhHHHHHHHHHHHHhcCeEEEEec
Confidence 4689999999999999999987 466999999987321 11 112356778889999999999988
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ip 209 (513)
.+.+++.+..- .+ ..|.+.++.++++|-||+.+|++|+.....
T Consensus 277 ~~s~l~~~~~G-----ev----~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 277 VVSSLEGNSDG-----EV----SEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred ceeecccCCCC-----cE----EEEEeccCCEeccCeEEEeecccccccccc
Confidence 55666554420 11 258889999999999999999999866554
No 185
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.23 E-value=2e-05 Score=84.69 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=32.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
.+.++|+|||||++|+++|..|++ .+++|+|||+.+..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~------~G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ------YGVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCC
Confidence 345799999999999999999998 45699999998744
No 186
>PRK06370 mercuric reductase; Validated
Probab=98.23 E-value=8e-06 Score=86.17 Aligned_cols=102 Identities=15% Similarity=0.273 Sum_probs=72.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+... ...++...+.+.+++.|++++.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G------~~Vtli~~~~~~l~~-----------~~~~~~~~l~~~l~~~GV~i~~~~ 233 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFG------SEVTVIERGPRLLPR-----------EDEDVAAAVREILEREGIDVRLNA 233 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC------CeEEEEEcCCCCCcc-----------cCHHHHHHHHHHHHhCCCEEEeCC
Confidence 479999999999999999999854 499999998743210 11234455667777889999986
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEec-CCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLL-ESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~-~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
+|..++.++.. +.+ .+.. .++.++++|.||+|+|.+|+..
T Consensus 234 ~V~~i~~~~~~------~~v---~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 234 ECIRVERDGDG------IAV---GLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred EEEEEEEcCCE------EEE---EEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 88888754321 000 1111 2345799999999999998754
No 187
>PRK08013 oxidoreductase; Provisional
Probab=98.23 E-value=5.2e-06 Score=85.85 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=31.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
.++|+|||||++|+++|..|++ .+++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~------~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG------SGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh------CCCEEEEEeCCCC
Confidence 3699999999999999999998 4569999998764
No 188
>PRK06996 hypothetical protein; Provisional
Probab=98.23 E-value=4.7e-06 Score=86.10 Aligned_cols=40 Identities=28% Similarity=0.251 Sum_probs=32.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+.++|+||||||+|+++|..|++.+. ..+++|+|||+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~--~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSA--TRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCC--cCCceEEEecCCC
Confidence 445799999999999999999998541 0246899999864
No 189
>PRK07588 hypothetical protein; Provisional
Probab=98.22 E-value=5.2e-06 Score=85.60 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=30.1
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
.+|+|||||++|+++|..|++ .+++|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~------~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR------YGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH------CCCceEEEeCCCC
Confidence 379999999999999999998 4569999998763
No 190
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.21 E-value=3.7e-06 Score=85.12 Aligned_cols=100 Identities=26% Similarity=0.348 Sum_probs=76.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhcccc-------CCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQ-------DDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG 151 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~-------~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~ 151 (513)
...|+|||||+.|+..|-+|+.+.+. .+.+++|+|||+.+... |. .++++.....+.+++.|
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL--p~---------~~~~l~~~a~~~L~~~G 223 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL--PM---------FPPKLSKYAERALEKLG 223 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc--cC---------CCHHHHHHHHHHHHHCC
Confidence 35799999999999999888776431 12356999999988321 21 12345566677888999
Q ss_pred eEEEEE-eEEEEeCCCCcCcCCCceeeccceEecCCce-EEEecEEEEeCCCCCC
Q 010331 152 VQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGL-IVEYDWLVLSLGAEPK 204 (513)
Q Consensus 152 v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~-~i~yD~LVlAtGs~~~ 204 (513)
|++..+ .|++++++. |++++|. +++||.+|.|+|.+++
T Consensus 224 V~v~l~~~Vt~v~~~~---------------v~~~~g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 224 VEVLLGTPVTEVTPDG---------------VTLKDGEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred CEEEcCCceEEECCCc---------------EEEccCCeeEecCEEEEcCCCcCC
Confidence 999987 899997764 7777776 4999999999999875
No 191
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.21 E-value=5.9e-06 Score=92.37 Aligned_cols=100 Identities=18% Similarity=0.337 Sum_probs=73.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|||||||+.|+.+|..|++. +.+|+||++.+... .. .. .......+.+.+++.||+++.+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~------G~~Vtvv~~~~~ll-----~~----~l-d~~~~~~l~~~l~~~GV~v~~~~ 203 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNL------GMDVSVIHHAPGLM-----AK----QL-DQTAGRLLQRELEQKGLTFLLEK 203 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhc------CCeEEEEccCCchh-----hh----hc-CHHHHHHHHHHHHHcCCEEEeCC
Confidence 46899999999999999999985 45999999876321 11 11 1123345566777889999987
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~ 205 (513)
.++.+..+.+. ..|.+.+|+++++|.+|+|+|.+|+.
T Consensus 204 ~v~~i~~~~~~-----------~~v~~~dG~~i~~D~Vi~a~G~~Pn~ 240 (785)
T TIGR02374 204 DTVEIVGATKA-----------DRIRFKDGSSLEADLIVMAAGIRPND 240 (785)
T ss_pred ceEEEEcCCce-----------EEEEECCCCEEEcCEEEECCCCCcCc
Confidence 67777644321 14677888899999999999998874
No 192
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.20 E-value=8.2e-06 Score=85.63 Aligned_cols=101 Identities=21% Similarity=0.250 Sum_probs=73.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|++.+ .+|+||++.+... .. ...++...+.+.+++.|++++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g------~~Vtli~~~~~il-~~----------~d~~~~~~~~~~l~~~gI~i~~~~ 228 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLG------SETHLVIRHERVL-RS----------FDSMISETITEEYEKEGINVHKLS 228 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC------CcEEEEecCCCCC-cc----------cCHHHHHHHHHHHHHcCCEEEcCC
Confidence 479999999999999999999854 4999999876321 11 11234556667777889999986
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCc-eEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g-~~i~yD~LVlAtGs~~~~~ 206 (513)
.++.+..+... . ..+.++++ ..+++|.+++|+|.+|+..
T Consensus 229 ~v~~i~~~~~~-----~-----~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 229 KPVKVEKTVEG-----K-----LVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred EEEEEEEeCCc-----e-----EEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 78888643210 0 13555566 5799999999999998754
No 193
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.20 E-value=5.6e-06 Score=84.81 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
++||+|||||+.|+++|++|++. +.+|+|||++.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~------g~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR------GLRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC------CCeEEEEeccc
Confidence 47999999999999999999994 45999999864
No 194
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.20 E-value=6.4e-05 Score=79.48 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=32.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
+.||||||||..|+++|++|++. .++.+|+|||+.+.
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~----~~g~~V~VlEk~~~ 41 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKEL----EPEWSITMFERLDG 41 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHh----CCCCeEEEEEcCCc
Confidence 47999999999999999999984 25679999999763
No 195
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.19 E-value=1.7e-06 Score=78.50 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=33.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
..||+|||+||+||+||++|++ .+++|+|+|++.++..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk------~g~kV~i~E~~ls~GG 67 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK------AGLKVAIFERKLSFGG 67 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh------CCceEEEEEeecccCC
Confidence 3589999999999999999998 5779999999886543
No 196
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.19 E-value=6.3e-06 Score=84.75 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=29.9
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
++|+|||||++|+++|..|++ .+++|+|||+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~------~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK------QGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh------CCCcEEEEcCCC
Confidence 689999999999999999998 456999999864
No 197
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.19 E-value=6.9e-06 Score=85.13 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=29.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~ 117 (513)
.++|+|||||++|+++|..|++ .+++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~------~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE------SDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh------CCCEEEEEcCC
Confidence 3689999999999999999998 45699999985
No 198
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.19 E-value=3.9e-06 Score=78.47 Aligned_cols=33 Identities=30% Similarity=0.572 Sum_probs=30.1
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+|+|||+|+||++||..|+. .+.+|||+||+.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~------aG~~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALRE------AGREVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHh------cCcEEEEEEcCC
Confidence 479999999999999999998 566999999976
No 199
>PRK06753 hypothetical protein; Provisional
Probab=98.19 E-value=6.8e-06 Score=84.09 Aligned_cols=33 Identities=33% Similarity=0.629 Sum_probs=29.9
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
+|+|||||+||+++|..|++ .+++|+|+|+++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~------~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE------QGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCc
Confidence 79999999999999999998 4569999999873
No 200
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.19 E-value=5.3e-06 Score=86.83 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=35.0
Q ss_pred HHHHhcCCCeEEEEEeEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCC
Q 010331 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204 (513)
Q Consensus 143 ~~~~~~~~~v~~~~~~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~ 204 (513)
+.+...+.|+++++++|+.+..++.. .+ ..|.+++|.++++|++|=|+|....
T Consensus 160 L~~~A~~~Gv~~~~g~V~~v~~~~~g-----~i----~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 160 LRRHAEERGVEVIEGTVVDVELDEDG-----RI----TAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHTT-EEEET-EEEEEE-TTS-----EE----EEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHhcCCCEEEeCEEEEEEEcCCC-----CE----EEEEECCCCEEEEeEEEECCCccch
Confidence 44445567999999999888655431 01 1477888999999999999997643
No 201
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.19 E-value=8.1e-06 Score=86.12 Aligned_cols=100 Identities=25% Similarity=0.388 Sum_probs=72.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+++ .+|+||++.+... |. ...++...+.+.+++.+++++.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g------~~Vtli~~~~~~l--~~---------~d~~~~~~l~~~l~~~gV~i~~~~ 228 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLG------SEVTILQRSDRLL--PR---------EEPEISAAVEEALAEEGIEVVTSA 228 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC------CcEEEEEcCCcCC--Cc---------cCHHHHHHHHHHHHHcCCEEEcCc
Confidence 478999999999999999999854 4999999987432 11 01234455667777889999987
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecC---CceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLE---SGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~---~g~~i~yD~LVlAtGs~~~~~ 206 (513)
+|+.++.++.. + .+.+. ++.++++|.+|+|+|.+|+..
T Consensus 229 ~V~~i~~~~~~------~-----~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 229 QVKAVSVRGGG------K-----IITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred EEEEEEEcCCE------E-----EEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 68888654321 0 22222 235799999999999998755
No 202
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.19 E-value=5.6e-06 Score=84.92 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=29.3
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
++|||||||.+|+++|++|++. +.+|+|||+.+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~------g~~V~l~e~~~ 33 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH------GKKTLLLEQFD 33 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCeEEEEeccC
Confidence 4799999999999999999984 55999999854
No 203
>PRK07846 mycothione reductase; Reviewed
Probab=98.19 E-value=1.1e-05 Score=84.56 Aligned_cols=100 Identities=26% Similarity=0.302 Sum_probs=71.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|++. +.+|+||++.+.+. +. ...++...+.+++ +.+++++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~~~ll--~~---------~d~~~~~~l~~l~-~~~v~i~~~~ 227 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSAL------GVRVTVVNRSGRLL--RH---------LDDDISERFTELA-SKRWDVRLGR 227 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCccc--cc---------cCHHHHHHHHHHH-hcCeEEEeCC
Confidence 47999999999999999999985 44999999987432 11 1112333344444 357888866
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ 207 (513)
+++.++.+++. ..+.+.+++++++|.|++|+|.+|+...
T Consensus 228 ~v~~i~~~~~~-----------v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 228 NVVGVSQDGSG-----------VTLRLDDGSTVEADVLLVATGRVPNGDL 266 (451)
T ss_pred EEEEEEEcCCE-----------EEEEECCCcEeecCEEEEEECCccCccc
Confidence 78888654320 1355667778999999999999987543
No 204
>PLN02507 glutathione reductase
Probab=98.18 E-value=8.8e-06 Score=86.40 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=74.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+.+ .+|+||++.+... + + ...++...+.+.+++.|++++.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G------~~Vtli~~~~~~l-----~----~--~d~~~~~~l~~~l~~~GI~i~~~~ 265 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMG------ATVDLFFRKELPL-----R----G--FDDEMRAVVARNLEGRGINLHPRT 265 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcC------CeEEEEEecCCcC-----c----c--cCHHHHHHHHHHHHhCCCEEEeCC
Confidence 468999999999999999998854 4999999876321 1 0 11244455666777889999987
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
+|+.++.+++. ..+.+++|.++++|.+++|+|.+|+..
T Consensus 266 ~V~~i~~~~~~-----------~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 266 NLTQLTKTEGG-----------IKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred EEEEEEEeCCe-----------EEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 78888643220 135566777899999999999998754
No 205
>PRK06185 hypothetical protein; Provisional
Probab=98.18 E-value=9.5e-06 Score=84.08 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+.++|+|||||++|+++|..|++ .+++|+|||+++
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~------~G~~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR------AGVDVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh------CCCcEEEEecCC
Confidence 45899999999999999999998 456999999875
No 206
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.18 E-value=9.5e-06 Score=85.57 Aligned_cols=100 Identities=21% Similarity=0.290 Sum_probs=73.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++++|||||+.|+.+|..|++.+ .+|++|++.+..... ...++...+.+.+++.||+++.+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g------~~Vtli~~~~~~l~~-----------~d~~~~~~l~~~L~~~gV~i~~~~ 239 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELG------VKVTLVSSRDRVLPG-----------EDADAAEVLEEVFARRGMTVLKRS 239 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC------CeEEEEEcCCcCCCC-----------CCHHHHHHHHHHHHHCCcEEEcCC
Confidence 368999999999999999998854 499999987632110 01133455667777889999976
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
+++.++.++.. ..+.+.+|+++++|.+++|+|.+|+..
T Consensus 240 ~v~~v~~~~~~-----------~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 240 RAESVERTGDG-----------VVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred EEEEEEEeCCE-----------EEEEECCCcEEEecEEEEeecCCcCCC
Confidence 78888643220 135556778899999999999998754
No 207
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.17 E-value=2.3e-05 Score=81.27 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
+||||||||+.|+++|++|++. +.+|+|+|+++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCCC
Confidence 6999999999999999999984 569999999863
No 208
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.17 E-value=1.2e-05 Score=85.82 Aligned_cols=35 Identities=34% Similarity=0.532 Sum_probs=30.6
Q ss_pred EEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 82 VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
|||||||.+||+||..|++ .+++|+|+|+++....
T Consensus 1 vvVIGaG~~GL~aA~~La~------~G~~V~VlE~~~~~GG 35 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAA------AGIPVTVVEQRDKPGG 35 (502)
T ss_pred CEEECcCHHHHHHHHHHHh------CCCcEEEEECCCCCcC
Confidence 6999999999999999998 4569999999986543
No 209
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.17 E-value=2.6e-05 Score=83.08 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
...||||||+|.||++||..+++ .+.+|+|||+.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~------~Ga~VivlEK~~~ 95 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKD------AGMNPVILEKMPV 95 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH------CCCCEEEEECCCC
Confidence 35799999999999999999998 4569999999763
No 210
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.16 E-value=3.2e-05 Score=83.42 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=32.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
....+|+|||||++|+++|..|++ .+++|+|||+.+..
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~------~G~~v~viE~~~~~ 58 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQ------QGVPVVLLDDDDTL 58 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh------CCCcEEEEeCCCCC
Confidence 356799999999999999999998 45699999998743
No 211
>PRK14694 putative mercuric reductase; Provisional
Probab=98.16 E-value=1.2e-05 Score=84.97 Aligned_cols=98 Identities=13% Similarity=0.219 Sum_probs=71.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|++++ .+|+|+++...+ +. ...++...+.+.+++.|++++.+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g------~~Vtlv~~~~~l---~~---------~~~~~~~~l~~~l~~~GI~v~~~~ 239 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLG------SRVTVLARSRVL---SQ---------EDPAVGEAIEAAFRREGIEVLKQT 239 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC------CeEEEEECCCCC---CC---------CCHHHHHHHHHHHHhCCCEEEeCC
Confidence 468999999999999999999854 499999874311 10 11244566777788889999986
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
+++.++.++.. ..+.++++ ++++|.||+|+|.+|+..
T Consensus 240 ~v~~i~~~~~~-----------~~v~~~~~-~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 240 QASEVDYNGRE-----------FILETNAG-TLRAEQLLVATGRTPNTE 276 (468)
T ss_pred EEEEEEEcCCE-----------EEEEECCC-EEEeCEEEEccCCCCCcC
Confidence 88888654431 12344444 799999999999998754
No 212
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=1.1e-05 Score=85.21 Aligned_cols=100 Identities=23% Similarity=0.326 Sum_probs=71.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|++.+ .+|+|+|+.+... |.. ..++...+.+.+++.|++++.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G------~~Vtlv~~~~~~l--~~~---------d~~~~~~l~~~l~~~gV~i~~~~ 234 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYG------VDVTIVEFLDRAL--PNE---------DAEVSKEIAKQYKKLGVKILTGT 234 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcC------CeEEEEecCCCcC--Ccc---------CHHHHHHHHHHHHHCCCEEEECC
Confidence 468999999999999999999854 4999999876321 110 1234455667777889999976
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEec--CCc--eEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLL--ESG--LIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~--~~g--~~i~yD~LVlAtGs~~~~~ 206 (513)
+|+.++.+... + .+.+ .+| .++++|.||+|+|.+|+..
T Consensus 235 ~v~~i~~~~~~------~-----~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 235 KVESIDDNGSK------V-----TVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEEEEEEeCCe------E-----EEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 88888654321 1 1222 244 4799999999999988754
No 213
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.16 E-value=1.3e-05 Score=85.42 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=38.5
Q ss_pred CCCeEeCCCccccCCCCEEEEccccc-ccCCCCCCCCCchHHHHHHHHHHHHHHHHHHC
Q 010331 368 RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~~p~VfaiGD~a~-~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~ 425 (513)
.|.|.||.+.++ +.|++||+|+|+. ...-.+..-......+.-.|+.+++++.....
T Consensus 341 ~GGi~vd~~~~t-~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~ 398 (513)
T PRK07512 341 MGGIAVDADGRS-SLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTPA 398 (513)
T ss_pred cCCEEECCCCcc-ccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477999998887 7999999999973 21100111122344567788999999877543
No 214
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.16 E-value=1.9e-05 Score=75.78 Aligned_cols=134 Identities=16% Similarity=0.072 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceE-EEecccccCCcceEEeeceEEE
Q 010331 264 GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI-LELQPAIKGLESQIFEADLVLW 342 (513)
Q Consensus 264 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~i~aD~vi~ 342 (513)
.+.+.+...++..|.-++.+..|...+-.. ++|+ +.++ .. ....+.+|..|+
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-----------------------~~v~~i~tr---n~-~diP~~a~~~VL 311 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG-----------------------GRVTEIYTR---NH-ADIPLRADFYVL 311 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC-----------------------CeEEEEEec---cc-ccCCCChhHeee
Confidence 445677788999999999999888776544 2221 1111 11 234577888888
Q ss_pred ecCCCCCCCCCCCCC-Cc--cCCCcc--CC-----------------CCCeEeCCCccccC----CCCEEEEcccccccC
Q 010331 343 TVGSKPLLPHVEPPN-NR--LHDLPL--NA-----------------RGQAETDETLCVKG----HPRIFALGDSSALRD 396 (513)
Q Consensus 343 a~G~~p~~~~l~~~~-~~--~~~~~~--~~-----------------~G~i~Vd~~l~~~~----~p~VfaiGD~a~~~~ 396 (513)
|+|.--...+..+-. +. ++++.+ +. .=.+.+|+++|... .+|+||||-+....|
T Consensus 312 AsGsffskGLvae~d~I~EPIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfd 391 (421)
T COG3075 312 ASGSFFSKGLVAERDKIYEPIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFD 391 (421)
T ss_pred eccccccccchhhhhhhhcchhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCc
Confidence 888643322221100 00 111111 00 01267778877632 589999999998766
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 397 SSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 397 ~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
+-.. ..-.-+|+..|..+|..|.+...+
T Consensus 392 pi~e--gcGsGVaivta~~aa~qi~~~~~~ 419 (421)
T COG3075 392 PIAE--GCGSGVAIVTALHAAEQIAERAGG 419 (421)
T ss_pred HHHh--cCCcchHHHHHHHHHHHHHHHhcc
Confidence 5100 112235666777888888776543
No 215
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.15 E-value=7.4e-06 Score=83.60 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=29.4
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+||+|||||++|+++|++|++. +.+|+|+|+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~------G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR------GLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 4799999999999999999984 55999999865
No 216
>PRK11445 putative oxidoreductase; Provisional
Probab=98.14 E-value=9.4e-06 Score=82.39 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=29.5
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+||+||||||||+++|..|++ . ++|+|||+.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~------~-~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG------K-MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc------c-CCEEEEECCC
Confidence 699999999999999999987 4 6999999876
No 217
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.14 E-value=9.2e-06 Score=84.04 Aligned_cols=102 Identities=21% Similarity=0.272 Sum_probs=77.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.+++||||+|++|+.+|..|++. +.+|+++|+.+....+... .++...+.+.++.++++++.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~------G~~v~l~e~~~~~~~~~~~----------~~~~~~~~~~l~~~gi~~~~~~ 199 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR------GKKVTLIEAADRLGGQLLD----------PEVAEELAELLEKYGVELLLGT 199 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc------CCeEEEEEcccccchhhhh----------HHHHHHHHHHHHHCCcEEEeCC
Confidence 47999999999999999999995 4599999998854433221 245567778888889999776
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~ 204 (513)
.+..|+...+. .... .+...++..+++|.+++++|.+|+
T Consensus 200 ~~~~i~~~~~~------~~~~--~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 200 KVVGVEGKGNT------LVVE--RVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred ceEEEEcccCc------ceee--EEEEeCCcEEEeeEEEEeeccccc
Confidence 88999876541 0000 045667778999999999999985
No 218
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.14 E-value=1e-05 Score=84.28 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=73.0
Q ss_pred CeEEEECCCHHHHHHHHHhhhcccc--------CCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQ--------DDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG 151 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~--------~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~ 151 (513)
++|+|||||+.|+..|..|+..... -..+.+|+||++.+... +.+ ..++.....+.+++.|
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll--~~~---------~~~~~~~~~~~L~~~g 242 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL--GSF---------DQALRKYGQRRLRRLG 242 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc--ccC---------CHHHHHHHHHHHHHCC
Confidence 4899999999999999998753210 01357999999876331 111 1234566677888899
Q ss_pred eEEEEE-eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCC
Q 010331 152 VQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204 (513)
Q Consensus 152 v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~ 204 (513)
|+++.+ +|+.++.+ .|.+++|+++++|.+|+++|.+++
T Consensus 243 V~v~~~~~v~~v~~~---------------~v~~~~g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 243 VDIRTKTAVKEVLDK---------------EVVLKDGEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred CEEEeCCeEEEEeCC---------------EEEECCCCEEEccEEEEccCCCCc
Confidence 999966 88888643 366788889999999999998775
No 219
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.12 E-value=1.7e-05 Score=83.82 Aligned_cols=104 Identities=16% Similarity=0.239 Sum_probs=74.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..+..+. ..+.+|+||++.+... +. ...++...+.+.+++.|++++.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~---~~G~~Vtli~~~~~il--~~---------~d~~~~~~l~~~L~~~GI~i~~~~ 252 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYK---PRGGKVTLCYRNNMIL--RG---------FDSTLRKELTKQLRANGINIMTNE 252 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhc---cCCCeEEEEecCCccc--cc---------cCHHHHHHHHHHHHHcCCEEEcCC
Confidence 478999999999999998776541 1356999999877431 11 11245566677787889999986
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
.++.+..++.. . ..+.+.++.++++|.+++|+|.+|+..
T Consensus 253 ~v~~i~~~~~~-----~-----~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 253 NPAKVTLNADG-----S-----KHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred EEEEEEEcCCc-----e-----EEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 78888643210 0 135556677899999999999998754
No 220
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.12 E-value=1.8e-05 Score=83.19 Aligned_cols=100 Identities=22% Similarity=0.289 Sum_probs=70.7
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+.+ .+|+||++.+.+. +. ...++...+.+.++ .+++++.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G------~~Vtli~~~~~ll--~~---------~d~~~~~~l~~~~~-~gI~i~~~~ 230 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALG------TRVTIVNRSTKLL--RH---------LDEDISDRFTEIAK-KKWDIRLGR 230 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC------CcEEEEEccCccc--cc---------cCHHHHHHHHHHHh-cCCEEEeCC
Confidence 478999999999999999998854 4999999977431 11 01123334444443 47888875
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ 207 (513)
+|+.++.++.. ..+.+.+|+++++|.+++|+|.+|+...
T Consensus 231 ~V~~i~~~~~~-----------v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 231 NVTAVEQDGDG-----------VTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred EEEEEEEcCCe-----------EEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 88888754321 1355566778999999999999987543
No 221
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.11 E-value=9.3e-06 Score=84.41 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=29.6
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
+|+|||||+|||++|..|++.+ +++|+|+|+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g-----~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHS-----HLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcC-----CCCEEEEecCCc
Confidence 7999999999999999999842 259999999773
No 222
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.11 E-value=0.00011 Score=77.21 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=32.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+...||||||||.+|+++|..|+++ .++.+|+|+|+.+
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~----~~~~~V~vlEr~~ 41 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKEL----DPDWNIEVVERLD 41 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhC----CCCCeEEEEEcCC
Confidence 3456999999999999999999985 3678999999944
No 223
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.11 E-value=1.7e-05 Score=81.78 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=30.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+.+|+|||||++|+++|..|++ .+++|+|+|+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~------~G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL------AGIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh------cCCCEEEEEcCC
Confidence 4789999999999999999998 456999999986
No 224
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.11 E-value=6.6e-06 Score=84.94 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=31.9
Q ss_pred eC-CCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHH
Q 010331 373 TD-ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 417 (513)
Q Consensus 373 Vd-~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a 417 (513)
+| .+|++..+||+|++|.+..+..+.| .-+-|.|...|..++
T Consensus 357 i~~~~m~~k~~~gly~~GE~lDv~g~~G---GyNlq~a~~sg~~ag 399 (400)
T TIGR00275 357 INPKTMESKLVPGLYFAGEVLDVDGDTG---GYNLQWAWSSGYLAG 399 (400)
T ss_pred cChhhhhhcCCCCeEEEEEEEecCCCCC---chHHHHHHHHHHHhc
Confidence 45 4788888999999999999865433 356678888887765
No 225
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.11 E-value=1.2e-05 Score=82.50 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=29.1
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~ 117 (513)
.+|+|||||++|+++|..|++ .+++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~------~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ------KGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc------CCCeEEEecCC
Confidence 589999999999999999998 45699999975
No 226
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.10 E-value=1.1e-05 Score=90.26 Aligned_cols=102 Identities=20% Similarity=0.265 Sum_probs=74.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.+++||||||+.|+.+|..|+++ +.+|+||+..+... +.. . ..+....+.+.+++.||+++.+
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~------G~~VtvVe~~~~ll-----~~~----l-d~~~~~~l~~~L~~~GV~v~~~~ 208 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNL------GVETHVIEFAPMLM-----AEQ----L-DQMGGEQLRRKIESMGVRVHTSK 208 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEeccccch-----hhh----c-CHHHHHHHHHHHHHCCCEEEcCC
Confidence 46899999999999999999985 45999999877321 111 1 1133455667777889999986
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~ 205 (513)
.++.|..+... . ...+.+++|+++++|.+|+|+|.+|+.
T Consensus 209 ~v~~I~~~~~~-----~----~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 209 NTLEIVQEGVE-----A----RKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred eEEEEEecCCC-----c----eEEEEECCCCEEEcCEEEECCCcccCc
Confidence 78888643210 0 013667788899999999999999874
No 227
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.09 E-value=2.1e-05 Score=83.01 Aligned_cols=100 Identities=20% Similarity=0.306 Sum_probs=71.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+.+ .+|+|||+.+... + + . ..++...+.+.+++.+++++.+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G------~~Vtlie~~~~il-----~----~-~-d~~~~~~l~~~l~~~gV~i~~~~ 236 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLG------AQVTVVEYLDRIC-----P----G-T-DTETAKTLQKALTKQGMKFKLGS 236 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC------CeEEEEeCCCCCC-----C----C-C-CHHHHHHHHHHHHhcCCEEEECc
Confidence 479999999999999999999854 4999999877431 1 1 1 1134455667777889999976
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEec-----CCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLL-----ESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~-----~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
+|+.+..++.. + .+.+ .+++++++|.|++|+|.+|+..
T Consensus 237 ~V~~i~~~~~~------v-----~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 237 KVTGATAGADG------V-----SLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EEEEEEEcCCe------E-----EEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 88888654321 1 1221 1235799999999999988653
No 228
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.08 E-value=1.7e-05 Score=80.96 Aligned_cols=99 Identities=22% Similarity=0.298 Sum_probs=69.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||++|+.+|..|++.........+|+|++... . ++. ...++...+.+.+++.+|+++.+
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~-~-----l~~------~~~~~~~~~~~~l~~~gV~v~~~~ 212 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGAS-L-----LPG------FPAKVRRLVLRLLARRGIEVHEGA 212 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeCCc-c-----ccc------CCHHHHHHHHHHHHHCCCEEEeCC
Confidence 3589999999999999999986432001124899994322 1 110 11234455667788889999987
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~ 204 (513)
+++.++.+ .+.+++|.++++|.+|+|+|.+++
T Consensus 213 ~v~~i~~~---------------~v~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 213 PVTRGPDG---------------ALILADGRTLPADAILWATGARAP 244 (364)
T ss_pred eeEEEcCC---------------eEEeCCCCEEecCEEEEccCCChh
Confidence 78777532 366778889999999999998875
No 229
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.08 E-value=2.2e-05 Score=82.26 Aligned_cols=99 Identities=23% Similarity=0.400 Sum_probs=72.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+. +.+|+||++.+.+. |.. ..++...+.+.+++.|++++.+
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l--~~~---------~~~~~~~l~~~l~~~gV~v~~~~ 220 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANF------GSKVTILEAASLFL--PRE---------DRDIADNIATILRDQGVDIILNA 220 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCC--CCc---------CHHHHHHHHHHHHhCCCEEEeCC
Confidence 46899999999999999999985 45999999976332 110 1234455667788889999976
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
+++.++.++.. + .+.++++ ++++|.+++|+|.+|+..
T Consensus 221 ~v~~i~~~~~~------v-----~v~~~~g-~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 221 HVERISHHENQ------V-----QVHSEHA-QLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEEEEEcCCE------E-----EEEEcCC-eEEeCEEEEeecCCcCCC
Confidence 78888654321 1 2444455 689999999999998753
No 230
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.07 E-value=1.7e-05 Score=81.67 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||||++|+++|..|++ .+++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~------~G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK------AGIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH------CCCCEEEEECCC
Confidence 4789999999999999999998 456999999976
No 231
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.06 E-value=2.3e-05 Score=83.26 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=71.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|++.+ .+|+||++.. .. +.+ ..++...+.+.+++.+++++.+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G------~~Vtli~~~~--~l-~~~---------d~~~~~~l~~~l~~~GV~i~~~~ 243 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELG------FDVTVAVRSI--PL-RGF---------DRQCSEKVVEYMKEQGTLFLEGV 243 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC------CcEEEEEcCc--cc-ccC---------CHHHHHHHHHHHHHcCCEEEcCC
Confidence 358999999999999999999854 4999998632 11 111 1134456667777889999987
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ 207 (513)
.++.+...+.. ..+.+.+|+++++|.|++|+|.+|+...
T Consensus 244 ~v~~v~~~~~~-----------~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 244 VPINIEKMDDK-----------IKVLFSDGTTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred eEEEEEEcCCe-----------EEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence 66666543210 1355567778999999999999987543
No 232
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.06 E-value=0.0002 Score=74.43 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=29.2
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+|+|||||.+|+++|.+|++. +.+|+|+|+..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~------g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA------GHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC------CCEEEEEeCCC
Confidence 799999999999999999984 55999999975
No 233
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.04 E-value=2e-05 Score=80.40 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=30.1
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
||+|||||+||+++|..|++. .++++|+|+|+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~----~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA----RPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCCC
Confidence 699999999999999999973 1478999999976
No 234
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.03 E-value=2.2e-05 Score=80.69 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=31.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.++.+|||||||++|+++|++|++.| .+|+|||+..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G------~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERG------ADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcC------CEEEEEecCc
Confidence 34689999999999999999999954 4999999866
No 235
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.03 E-value=1.8e-05 Score=87.26 Aligned_cols=33 Identities=36% Similarity=0.447 Sum_probs=29.7
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+|||||||.+|+++|++|++. +.+|+|+|+..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~------G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR------GWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC------CCeEEEEecCC
Confidence 5999999999999999999984 55999999864
No 236
>PTZ00058 glutathione reductase; Provisional
Probab=98.03 E-value=2.8e-05 Score=83.23 Aligned_cols=101 Identities=14% Similarity=0.264 Sum_probs=71.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+.+ .+|+|+++.+... +. . ..++...+.+.+++.|++++.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G------~~Vtli~~~~~il--~~--------~-d~~i~~~l~~~L~~~GV~i~~~~ 299 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLG------AESYIFARGNRLL--RK--------F-DETIINELENDMKKNNINIITHA 299 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC------CcEEEEEeccccc--cc--------C-CHHHHHHHHHHHHHCCCEEEeCC
Confidence 578999999999999999999854 4999999877321 11 1 1234455667777889999986
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEec-CCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLL-ESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~-~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
.+..++.++.. .+ .+.. ++++++++|.|++|+|.+|+..
T Consensus 300 ~V~~I~~~~~~-----~v-----~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 300 NVEEIEKVKEK-----NL-----TIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred EEEEEEecCCC-----cE-----EEEECCCCEEEECCEEEECcCCCCCcc
Confidence 78888654210 01 2222 3345799999999999988744
No 237
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.02 E-value=0.00011 Score=75.62 Aligned_cols=37 Identities=35% Similarity=0.605 Sum_probs=32.5
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
++|+|||||.+||+||++|++.+ ++++|+|+|+.++.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~----p~~~i~lfE~~~r~ 37 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAG----PDVEVTLFEADDRV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhC----CCCcEEEEecCCCC
Confidence 37999999999999999999963 56899999998744
No 238
>PRK13748 putative mercuric reductase; Provisional
Probab=98.02 E-value=2.7e-05 Score=84.22 Aligned_cols=98 Identities=15% Similarity=0.249 Sum_probs=71.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+++ .+|+||++.+. ++. ...++...+.+.+++.|++++.+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g------~~Vtli~~~~~------l~~------~d~~~~~~l~~~l~~~gI~i~~~~ 331 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLG------SKVTILARSTL------FFR------EDPAIGEAVTAAFRAEGIEVLEHT 331 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC------CEEEEEecCcc------ccc------cCHHHHHHHHHHHHHCCCEEEcCC
Confidence 468999999999999999999854 49999997531 110 01234556677777889999976
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
.++.+..++.. ..+.++++ ++++|.+++|+|.+|+..
T Consensus 332 ~v~~i~~~~~~-----------~~v~~~~~-~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 332 QASQVAHVDGE-----------FVLTTGHG-ELRADKLLVATGRAPNTR 368 (561)
T ss_pred EEEEEEecCCE-----------EEEEecCC-eEEeCEEEEccCCCcCCC
Confidence 78888644321 12444455 699999999999998754
No 239
>PRK14727 putative mercuric reductase; Provisional
Probab=98.01 E-value=3.1e-05 Score=82.01 Aligned_cols=98 Identities=12% Similarity=0.152 Sum_probs=70.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+++ .+|+||++...+ +.. ..++...+.+.+++.|++++.+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G------~~Vtlv~~~~~l---~~~---------d~~~~~~l~~~L~~~GV~i~~~~ 249 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLG------SRVTILARSTLL---FRE---------DPLLGETLTACFEKEGIEVLNNT 249 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC------CEEEEEEcCCCC---Ccc---------hHHHHHHHHHHHHhCCCEEEcCc
Confidence 368999999999999999999854 499999874311 110 1134456667777889999976
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
+|+.+..++.. ..+.++++ ++++|.+|+|+|..|+..
T Consensus 250 ~V~~i~~~~~~-----------~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 250 QASLVEHDDNG-----------FVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred EEEEEEEeCCE-----------EEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 78888644321 13444555 689999999999998754
No 240
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.01 E-value=3.1e-05 Score=78.10 Aligned_cols=42 Identities=26% Similarity=0.422 Sum_probs=35.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p 124 (513)
....+|||||+|++||.+|+.|.+ .+++|+|+|.++++...-
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k------aG~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK------AGYQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh------cCcEEEEEeccCCcCcee
Confidence 345799999999999999999999 455999999999765543
No 241
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.00 E-value=2.6e-05 Score=80.70 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+.+|+|||||+||+++|..|++ .+++|+|+|+.+
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~------~G~~V~i~E~~~ 35 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAA------RGWAVTIIEKAQ 35 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHh------CCCcEEEEecCC
Confidence 4789999999999999999998 456999999876
No 242
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.00 E-value=5.1e-06 Score=86.53 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=26.8
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
||||||||+||++||..+++. +.+|+|||+.++.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~------G~~VlLiE~~~~l 34 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA------GAKVLLIEKGGFL 34 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TS-EEEE-SSSSS
T ss_pred CEEEECccHHHHHHHHHHHHC------CCEEEEEECCccC
Confidence 799999999999999999994 5699999998854
No 243
>PLN02985 squalene monooxygenase
Probab=97.99 E-value=5.4e-05 Score=80.54 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=31.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
...+||+|||||++|+++|..|++ .+.+|+|+|+.+
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~------~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAK------DGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHH------cCCeEEEEECcC
Confidence 446799999999999999999998 456999999864
No 244
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.97 E-value=4.3e-05 Score=80.62 Aligned_cols=100 Identities=20% Similarity=0.346 Sum_probs=70.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+++ .+|+|+++.+... +. ...++...+.+.+++. ++++.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g------~~Vtli~~~~~~l--~~---------~d~~~~~~~~~~l~~~-I~i~~~~ 230 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLG------VKVTVFERGDRIL--PL---------EDPEVSKQAQKILSKE-FKIKLGA 230 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC------CcEEEEecCCCcC--cc---------hhHHHHHHHHHHHhhc-cEEEcCC
Confidence 478999999999999999999854 4999999987432 11 1123445566667777 998875
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEec--CCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLL--ESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~--~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
+++.++.+.+. .+ .+.. .++.++++|.+++|+|.+|+..
T Consensus 231 ~v~~i~~~~~~-----~v-----~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 231 KVTSVEKSGDE-----KV-----EELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred EEEEEEEcCCc-----eE-----EEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 78888644320 01 1212 2335799999999999998755
No 245
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.93 E-value=6.7e-06 Score=75.09 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=29.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcc
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~ 121 (513)
..||+|||+||+||+||++|++ .+++|++||++....
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~------~g~kV~v~E~~~~~G 53 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAK------AGLKVAVIERKLSPG 53 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHH------HTS-EEEEESSSS-B
T ss_pred cCCEEEECCChhHHHHHHHHHH------CCCeEEEEecCCCCC
Confidence 4799999999999999999999 466999999987543
No 246
>PRK10262 thioredoxin reductase; Provisional
Probab=97.93 E-value=5.3e-05 Score=75.86 Aligned_cols=98 Identities=17% Similarity=0.292 Sum_probs=69.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+... ..+...+.+.++..+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~------~~Vtlv~~~~~~~~~-------------~~~~~~~~~~l~~~gV~i~~~~ 206 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIA------SEVHLIHRRDGFRAE-------------KILIKRLMDKVENGNIILHTNR 206 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhC------CEEEEEEECCccCCC-------------HHHHHHHHhhccCCCeEEEeCC
Confidence 469999999999999999999854 499999997743110 123345566677889999975
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecC------CceEEEecEEEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLE------SGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~------~g~~i~yD~LVlAtGs~~~~ 205 (513)
.++.+..++.. + ..|.+. +.+++++|.||+++|.+|+.
T Consensus 207 ~v~~v~~~~~~------~----~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~ 250 (321)
T PRK10262 207 TLEEVTGDQMG------V----TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNT 250 (321)
T ss_pred EEEEEEcCCcc------E----EEEEEEEcCCCCeEEEEECCEEEEEeCCccCh
Confidence 78888754310 0 012221 12479999999999998864
No 247
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.92 E-value=5.1e-05 Score=80.31 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=68.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
..+++|||||+.|+.+|..|++.+ .+|+|+++.. .. +.+ ..++...+.+.+++.|++++.+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G------~~Vtli~~~~--~l-~~~---------d~~~~~~l~~~L~~~gV~i~~~~ 241 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIG------LDVTVMVRSI--LL-RGF---------DQDCANKVGEHMEEHGVKFKRQF 241 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhC------CcEEEEEecc--cc-ccc---------CHHHHHHHHHHHHHcCCEEEeCc
Confidence 368999999999999999999854 4999998632 11 111 1234455667777889999986
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCc---eEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG---LIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g---~~i~yD~LVlAtGs~~~~~ 206 (513)
.++.+...+.. ..+.+.++ +++++|.+++|+|.+|+..
T Consensus 242 ~v~~v~~~~~~-----------~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 242 VPIKVEQIEAK-----------VKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred eEEEEEEcCCe-----------EEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 56666533210 02443333 4799999999999988754
No 248
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.92 E-value=4.6e-05 Score=78.97 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=30.6
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCC-CeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~-~~V~lIe~~~ 118 (513)
..+||+|||||..|+++|++|++. .+ .+|+|||++.
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~-----~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE-----HGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh-----cCCCeEEEEEccc
Confidence 357999999999999999999983 24 3899999864
No 249
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.91 E-value=1.6e-05 Score=59.76 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=27.0
Q ss_pred EECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 84 IVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
|||||++||++|..|++ .+++|+|+|+++..
T Consensus 1 IiGaG~sGl~aA~~L~~------~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK------AGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHH------TTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHH------CCCcEEEEecCccc
Confidence 89999999999999999 45699999998854
No 250
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.90 E-value=5.7e-05 Score=79.80 Aligned_cols=99 Identities=19% Similarity=0.319 Sum_probs=68.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+.+ .+|+||++.+... |. ...++...+.+.+++. ++++.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G------~~Vtlv~~~~~il--~~---------~d~~~~~~~~~~l~~~-v~i~~~~ 235 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLG------SEVDVVEMFDQVI--PA---------ADKDIVKVFTKRIKKQ-FNIMLET 235 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC------CCEEEEecCCCCC--Cc---------CCHHHHHHHHHHHhhc-eEEEcCC
Confidence 368999999999999999999854 4999999987431 11 1123344555566556 888875
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCC----ceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLES----GLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~----g~~i~yD~LVlAtGs~~~~~ 206 (513)
.|+.+...+.. + .+.+.+ .+++++|.+|+|+|.+|+..
T Consensus 236 ~v~~i~~~~~~------~-----~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 236 KVTAVEAKEDG------I-----YVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred EEEEEEEcCCE------E-----EEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 77777543320 1 233322 24699999999999998754
No 251
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.90 E-value=4e-05 Score=80.19 Aligned_cols=36 Identities=36% Similarity=0.403 Sum_probs=29.4
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~ 117 (513)
++|+|||||++|+++|..|++... ..+++|+|||++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~--~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPL--TKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcc--cCCCeEEEEeCC
Confidence 489999999999999999997210 136699999994
No 252
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.88 E-value=4.7e-05 Score=81.10 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+||||||||..|+++|+.|++ .+++|+|||+++
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~------rG~~V~LlEk~d 39 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAG------RGLKVLLCEKDD 39 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHh------CCCcEEEEECCC
Confidence 35899999999999999999998 456999999986
No 253
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.88 E-value=5.3e-05 Score=73.12 Aligned_cols=36 Identities=33% Similarity=0.420 Sum_probs=31.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+..+|+|||+|.=|+++|++|++.+ .+|+|+|+-+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g------~killLeqf~ 40 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRG------DKILLLEQFP 40 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcC------CeEEEEeccC
Confidence 34578999999999999999999954 5999999876
No 254
>PLN02546 glutathione reductase
Probab=97.86 E-value=7.9e-05 Score=79.89 Aligned_cols=101 Identities=17% Similarity=0.271 Sum_probs=70.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+..|..|.+.+ .+|+|+++.+... +. ...++...+.+.+++.||+++.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g------~~Vtlv~~~~~il--~~---------~d~~~~~~l~~~L~~~GV~i~~~~ 314 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLK------SDVHVFIRQKKVL--RG---------FDEEVRDFVAEQMSLRGIEFHTEE 314 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcC------CeEEEEEeccccc--cc---------cCHHHHHHHHHHHHHCCcEEEeCC
Confidence 479999999999999999998854 4999999876321 10 11234455566777889999976
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
.+..+...+.. .+ .+.+++++...+|.+|+|+|.+|+..
T Consensus 315 ~v~~i~~~~~g-----~v-----~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 315 SPQAIIKSADG-----SL-----SLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EEEEEEEcCCC-----EE-----EEEECCeEEEecCEEEEeeccccCCC
Confidence 77787543210 01 23445554456899999999998754
No 255
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.85 E-value=6.8e-05 Score=80.58 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+||||||||..|+++|+.|++ .+++|+|||+++
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~------rG~~V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL------RGLRCILVERHD 39 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH------cCCeEEEEECCC
Confidence 4799999999999999999998 456999999976
No 256
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.83 E-value=7.9e-05 Score=81.07 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=68.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHH-hcCCCeEEEEE
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADL-LANTGVQFFKD 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~-~~~~~v~~~~~ 157 (513)
.++|+|||||+.|+..|..|.+++ .+|+|||+.+... + ..+ .++...+.+. +++.+|+++.+
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G------~eVTLIe~~~~ll--~--------~~d-~eis~~l~~~ll~~~GV~I~~~ 374 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALG------SEVVSFEYSPQLL--P--------LLD-ADVAKYFERVFLKSKPVRVHLN 374 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCC------CeEEEEeccCccc--c--------cCC-HHHHHHHHHHHhhcCCcEEEcC
Confidence 468999999999999999998854 4999999987432 1 011 1333444444 35678999976
Q ss_pred -eEEEEeCCCCcCcCCCceeeccceEecC---------------CceEEEecEEEEeCCCCCCCCC
Q 010331 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLE---------------SGLIVEYDWLVLSLGAEPKLDV 207 (513)
Q Consensus 158 -~V~~id~~~~~~~~~~~v~~~~~~v~~~---------------~g~~i~yD~LVlAtGs~~~~~~ 207 (513)
.|+.|+.++.. ..+ .+.+. +.+++++|.|++|+|.+|+...
T Consensus 375 ~~V~~I~~~~~~----~~v-----~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 375 TLIEYVRAGKGN----QPV-----IIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred CEEEEEEecCCc----eEE-----EEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 78888654320 001 12111 1137999999999999987543
No 257
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.83 E-value=0.00018 Score=70.91 Aligned_cols=97 Identities=20% Similarity=0.348 Sum_probs=64.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCC-CeEEEEE
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANT-GVQFFKD 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~-~v~~~~~ 157 (513)
.++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+.. ...+.+.+++. +++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~------~~V~~v~~~~~~~~-----------------~~~~~~~l~~~~gv~~~~~ 197 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIA------KKVTLVHRRDKFRA-----------------EKILLDRLRKNPNIEFLWN 197 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhc------CEEEEEEeCcccCc-----------------CHHHHHHHHhCCCeEEEec
Confidence 469999999999999999998743 49999998763310 12233444455 9999865
Q ss_pred -eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCC
Q 010331 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204 (513)
Q Consensus 158 -~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~ 204 (513)
.++.++.+.+. ..+... .....++.++++|.+|+|+|.+++
T Consensus 198 ~~v~~i~~~~~~----~~v~~~--~~~~g~~~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 198 STVKEIVGDNKV----EGVKIK--NTVTGEEEELKVDGVFIAIGHEPN 239 (300)
T ss_pred cEEEEEEccCcE----EEEEEE--ecCCCceEEEEccEEEEeeCCCCC
Confidence 88888754321 000000 001123457999999999998765
No 258
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.81 E-value=0.00015 Score=73.54 Aligned_cols=68 Identities=21% Similarity=0.335 Sum_probs=49.0
Q ss_pred HHHHHHHHHhC-CcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEec
Q 010331 266 REAALKVLSAR-KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 344 (513)
Q Consensus 266 ~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~ 344 (513)
.+.+.+.+++. |+++++++.|+.++...+ +...+++.+..++ +..++.+++|++.+
T Consensus 184 Tr~l~~~l~~~~~~~~~~~~eV~~i~r~~d----------------------g~W~v~~~~~~~~-~~~~v~a~FVfvGA 240 (488)
T PF06039_consen 184 TRQLVEYLQKQKGFELHLNHEVTDIKRNGD----------------------GRWEVKVKDLKTG-EKREVRAKFVFVGA 240 (488)
T ss_pred HHHHHHHHHhCCCcEEEecCEeCeeEECCC----------------------CCEEEEEEecCCC-CeEEEECCEEEECC
Confidence 34455666666 999999999999998763 3355655544343 56789999999999
Q ss_pred CCCCCCCCCCCCC
Q 010331 345 GSKPLLPHVEPPN 357 (513)
Q Consensus 345 G~~p~~~~l~~~~ 357 (513)
|-..- .+++..+
T Consensus 241 GG~aL-~LLqksg 252 (488)
T PF06039_consen 241 GGGAL-PLLQKSG 252 (488)
T ss_pred chHhH-HHHHHcC
Confidence 98765 5665443
No 259
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.80 E-value=9.7e-05 Score=78.71 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+.+||||||||..|+++|+.|++ .+++|+|||+++
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~------rGl~V~LvEk~d 39 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAG------RGLSVLLCEQDD 39 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH------CCCeEEEEecCC
Confidence 35899999999999999999998 456999999976
No 260
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.80 E-value=0.00011 Score=76.96 Aligned_cols=32 Identities=28% Similarity=0.596 Sum_probs=29.1
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCC-CeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~-~~V~lIe~~~ 118 (513)
||||||||.||++||..+++ .+ .+|+|||+.+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~------~G~~~V~vlEk~~ 33 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK------AGAANVVLLEKMP 33 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH------cCCccEEEEecCC
Confidence 69999999999999999998 45 6999999976
No 261
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.78 E-value=0.00058 Score=66.38 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=32.7
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
.+.+|.|||+|++||+||..|.++ .+|||+|.+.+...
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-------hdVTLfEA~~rlGG 44 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-------HDVTLFEADRRLGG 44 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-------cceEEEeccccccC
Confidence 457999999999999999999873 49999999886544
No 262
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.77 E-value=8.8e-05 Score=71.56 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=34.6
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+.+|||||||-.|.+.|..|+++-. +.+++|+++|+++
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~r--d~gl~VvVVErdd 123 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERAR--DEGLNVVVVERDD 123 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhh--cCCceEEEEeccC
Confidence 36799999999999999999988765 5679999999987
No 263
>PTZ00367 squalene epoxidase; Provisional
Probab=97.76 E-value=0.0002 Score=76.76 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..++|+|||||++|+++|..|++ .+.+|+|+|+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar------~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK------QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh------cCCEEEEEcccc
Confidence 35899999999999999999998 456999999865
No 264
>PLN02612 phytoene desaturase
Probab=97.76 E-value=0.00056 Score=73.85 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
...++|+|||||++|++||.+|.+. +++|+|+|++++.
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~------g~~~~~~e~~~~~ 128 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADA------GHKPILLEARDVL 128 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhc------CCeEEEEecCCCC
Confidence 3457899999999999999999984 4599999998754
No 265
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.67 E-value=0.00022 Score=74.49 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=39.1
Q ss_pred CCCeEeCCCccccCCCCEEEEccccc-ccCCCCCCC--CCchHHHHHHHHHHHHHHHHHHC
Q 010331 368 RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPL--PATAQVAFQQADFAGWNLWAAIN 425 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~~p~VfaiGD~a~-~~~~~g~~~--~~~a~~A~~qg~~~a~ni~~~l~ 425 (513)
.|.|+||...|+ ..|++||+|.|+. .. .|... ......+.--|+.+++++...++
T Consensus 331 ~GGi~vd~~~~t-~i~gLYAaGE~a~~g~--hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~~ 388 (433)
T PRK06175 331 MGGIKVDLNSKT-SMKNLYAFGEVSCTGV--HGANRLASNSLLEGLVFSKRGAEKINSEID 388 (433)
T ss_pred cCCEEECCCccc-cCCCeEecccccccCC--CccccchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 577999998887 8999999999964 21 12111 22345677888999999876554
No 266
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.64 E-value=0.0013 Score=66.40 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=54.7
Q ss_pred cCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcce
Q 010331 254 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 333 (513)
Q Consensus 254 ~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~ 333 (513)
..++-....+.+-+.+.+.+++.|+++++++.|.++...+. +...+.+ ++|.
T Consensus 164 ~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~----------------------~~~~v~~------~~g~ 215 (486)
T COG2509 164 QRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN----------------------EVLGVKL------TKGE 215 (486)
T ss_pred ccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC----------------------ceEEEEc------cCCc
Confidence 34455555677788889999999999999999998877542 1122332 2788
Q ss_pred EEeeceEEEecCCCCCCCCCC
Q 010331 334 IFEADLVLWTVGSKPLLPHVE 354 (513)
Q Consensus 334 ~i~aD~vi~a~G~~p~~~~l~ 354 (513)
++++|.||+|+|.... +|+.
T Consensus 216 ~i~~~~vvlA~Grsg~-dw~~ 235 (486)
T COG2509 216 EIEADYVVLAPGRSGR-DWFE 235 (486)
T ss_pred EEecCEEEEccCcchH-HHHH
Confidence 9999999999999987 5654
No 267
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.62 E-value=0.00032 Score=71.22 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=63.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|||||+|+.|+.+|..|.+.+. -+|+||++.+... . .......+.++..+++++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~-----~~Vtvi~~~~~~~-~--------------~~~~~~~~~l~~~gi~i~~~~ 231 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGA-----EKVYLAYRRTINE-A--------------PAGKYEIERLIARGVEFLELV 231 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeecchhh-C--------------CCCHHHHHHHHHcCCEEeecc
Confidence 3689999999999999999987432 1499999765210 0 00112223466778998876
Q ss_pred eEEEEeCCCCcCcCCCceeeccc-------------eEecCCceEEEecEEEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGG-------------TVLLESGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~-------------~v~~~~g~~i~yD~LVlAtGs~~~~ 205 (513)
.++.+..+++. ..+..... +....++.++++|.||+|+|.+|+.
T Consensus 232 ~v~~i~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 288 (352)
T PRK12770 232 TPVRIIGEGRV----EGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP 288 (352)
T ss_pred CceeeecCCcE----eEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc
Confidence 66677543321 01111000 0112234589999999999998863
No 268
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.62 E-value=6e-05 Score=79.24 Aligned_cols=41 Identities=27% Similarity=0.478 Sum_probs=34.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 76 ~~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
..++++|+|||||.|||+||++|.+. +++|+|+|.++....
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~------G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDF------GFDVLVLEARDRVGG 52 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHc------CCceEEEeccCCcCc
Confidence 34568999999999999999999985 559999999986543
No 269
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.62 E-value=0.00041 Score=75.84 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+.+|+||||||+||++|..|+++ .+++|+|||+.+
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~-----~Gi~v~IiE~~~ 66 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF-----PDITTRIVERKP 66 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC-----CCCcEEEEEcCC
Confidence 357999999999999999999983 256999999876
No 270
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.59 E-value=0.00045 Score=75.52 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=30.5
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
...||||||||.|||+||..+++ .+.+|+|||+..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae------~G~~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGE------LGYNVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHH------cCCcEEEEecCC
Confidence 45799999999999999999988 466999999754
No 271
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00073 Score=65.17 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=39.1
Q ss_pred EeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCCCC
Q 010331 372 ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLL 430 (513)
Q Consensus 372 ~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~~~ 430 (513)
..|+++|..+.|++|++|-.+... -...+...|-+++.|.++...+.++.
T Consensus 324 lL~~tl~lk~~p~l~fAGQitG~E---------GYveSaA~Gllag~naa~~~~g~~~~ 373 (439)
T COG1206 324 LLDPTLQLKKRPNLFFAGQITGVE---------GYVESAASGLLAGINAARLALGEEPL 373 (439)
T ss_pred hhhHHhhcccCCCcEEeeeeecch---------hhhHHhhhhHHHhhHHHHHhcCCCCC
Confidence 346788888999999999998862 23455677899999999988887643
No 272
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.59 E-value=0.00037 Score=74.45 Aligned_cols=94 Identities=15% Similarity=0.316 Sum_probs=64.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcC-CCeEEEEE
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLAN-TGVQFFKD 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~-~~v~~~~~ 157 (513)
.++|+|||||+.|+.+|..|++.+ .+|+|+++.+.... ...+.+.++. .||+++.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g------~~Vtli~~~~~l~~-----------------~~~l~~~l~~~~gV~i~~~ 408 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIV------RHVTVLEFADELKA-----------------DKVLQDKLKSLPNVDILTS 408 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcC------cEEEEEEeCCcCCh-----------------hHHHHHHHhcCCCCEEEEC
Confidence 469999999999999999998754 49999997663310 0123344444 68999976
Q ss_pred -eEEEEeCCCCcCcCCCceeeccceEecC-----CceEEEecEEEEeCCCCCCC
Q 010331 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLE-----SGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 -~V~~id~~~~~~~~~~~v~~~~~~v~~~-----~g~~i~yD~LVlAtGs~~~~ 205 (513)
.++.+..++. .+. .|.+. +++++++|.+++|+|..|+.
T Consensus 409 ~~v~~i~~~~~------~v~----~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~ 452 (515)
T TIGR03140 409 AQTTEIVGDGD------KVT----GIRYQDRNSGEEKQLDLDGVFVQIGLVPNT 452 (515)
T ss_pred CeeEEEEcCCC------EEE----EEEEEECCCCcEEEEEcCEEEEEeCCcCCc
Confidence 7777754421 000 13222 22479999999999998864
No 273
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.54 E-value=0.00052 Score=74.48 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
...||||||||.|||.||..+++ .+.+|+|||+..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~------~G~~V~vleK~~ 45 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLAR------AGLSVAVLSKVF 45 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHH------CCCcEEEEeccC
Confidence 35799999999999999999988 456999999964
No 274
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.48 E-value=9.6e-05 Score=73.59 Aligned_cols=103 Identities=18% Similarity=0.288 Sum_probs=71.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhcccc--------CCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQ--------DDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANT 150 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~--------~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~ 150 (513)
.-.+|||||||-|+..|-+|+..... -...++|||||..+... +++ .+.+.....+++.+.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL--~mF---------dkrl~~yae~~f~~~ 286 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL--NMF---------DKRLVEYAENQFVRD 286 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH--HHH---------HHHHHHHHHHHhhhc
Confidence 35799999999999999988765321 13567999999987321 111 123445556778888
Q ss_pred CeEEEEE-eEEEEeCCCCcCcCCCceeeccceEecCCc--eEEEecEEEEeCCCCCCC
Q 010331 151 GVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 151 ~v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g--~~i~yD~LVlAtGs~~~~ 205 (513)
++++..+ .|..++.++- .+.+.+| ++++|--||-|||..+++
T Consensus 287 ~I~~~~~t~Vk~V~~~~I-------------~~~~~~g~~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 287 GIDLDTGTMVKKVTEKTI-------------HAKTKDGEIEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred cceeecccEEEeecCcEE-------------EEEcCCCceeeecceEEEecCCCCCch
Confidence 9999988 6666654432 1223344 589999999999988753
No 275
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.46 E-value=0.0092 Score=62.16 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=33.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
.+||||||+|.+|+.+|..|++.| .+|+++|+++++..
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~G------kkVLhlD~n~~yGG 41 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNG------KKVLHMDRNPYYGG 41 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCC------CEEEEecCCCCcCc
Confidence 589999999999999999999954 59999999996644
No 276
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.00014 Score=74.89 Aligned_cols=40 Identities=30% Similarity=0.388 Sum_probs=35.0
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCc
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~ 125 (513)
+||+|+|||.|||+||++|++ .+++|||+|.+++...+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~------~g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD------AGYDVTLYEARDRLGGKVA 40 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh------CCCceEEEeccCccCceee
Confidence 489999999999999999998 5569999999997766553
No 277
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.44 E-value=0.0002 Score=77.65 Aligned_cols=36 Identities=42% Similarity=0.641 Sum_probs=31.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.++.+|+|||||+||+++|..|++ .+++|+|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r------~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK------KGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh------cCCeEEEEeccc
Confidence 446799999999999999999999 456999999865
No 278
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.44 E-value=0.00073 Score=71.19 Aligned_cols=104 Identities=15% Similarity=0.100 Sum_probs=64.5
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..++|||||||..|+.+|..|.+.+. -+|+++++++....... ....+.+++.||+++.+
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~-----~~Vtlv~~~~~~~~~~~---------------~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGA-----ESVTIVYRRGREEMPAS---------------EEEVEHAKEEGVEFEWL 331 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-----CeEEEeeecCcccCCCC---------------HHHHHHHHHCCCEEEec
Confidence 35799999999999999999988432 28999998653211110 11123455678998875
Q ss_pred -eEEEEeCCCCcCcCCCceeeccce------------EecCCceEEEecEEEEeCCCCCC
Q 010331 158 -RVKLLCPSDHLGVNGPMACTHGGT------------VLLESGLIVEYDWLVLSLGAEPK 204 (513)
Q Consensus 158 -~V~~id~~~~~~~~~~~v~~~~~~------------v~~~~g~~i~yD~LVlAtGs~~~ 204 (513)
.+..+..++.. ...+.+.... ....++.++++|.||+|+|.+++
T Consensus 332 ~~v~~i~~~~~~---~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 332 AAPVEILGDEGR---VTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred CCcEEEEecCCc---eEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence 66676544320 0011110000 00123457999999999999886
No 279
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.43 E-value=0.00058 Score=67.13 Aligned_cols=100 Identities=22% Similarity=0.330 Sum_probs=73.9
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
+++++|||||+.||..+.-..++|. +||+||-.+.. .+.+ ..++...+..++.+.+++|..+
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGs------eVT~VEf~~~i----------~~~m-D~Eisk~~qr~L~kQgikF~l~t 273 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGS------EVTVVEFLDQI----------GGVM-DGEISKAFQRVLQKQGIKFKLGT 273 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCC------eEEEEEehhhh----------cccc-CHHHHHHHHHHHHhcCceeEecc
Confidence 5799999999999999998888765 99999975522 1122 2366777888888899999987
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecC-----CceEEEecEEEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLE-----SGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~-----~g~~i~yD~LVlAtGs~~~~ 205 (513)
+|...+.+... .+ .|.++ ..+++++|.|.+++|-+|..
T Consensus 274 kv~~a~~~~dg-----~v-----~i~ve~ak~~k~~tle~DvlLVsiGRrP~t 316 (506)
T KOG1335|consen 274 KVTSATRNGDG-----PV-----EIEVENAKTGKKETLECDVLLVSIGRRPFT 316 (506)
T ss_pred EEEEeeccCCC-----ce-----EEEEEecCCCceeEEEeeEEEEEccCcccc
Confidence 88888766531 11 12222 23589999999999998753
No 280
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.43 E-value=0.001 Score=69.75 Aligned_cols=104 Identities=14% Similarity=0.097 Sum_probs=62.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|||||||+.|+.+|..|.+++ .+|+++++++..... ......+.++..||+|+..
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G------~~Vtlv~~~~~~~~~---------------~~~~~~~~l~~~GV~~~~~~ 330 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLG------AEVHCLYRRTREDMT---------------ARVEEIAHAEEEGVKFHFLC 330 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC------CEEEEEeecCcccCC---------------CCHHHHHHHHhCCCEEEecc
Confidence 479999999999999999999854 489999987631100 0111123345678888854
Q ss_pred eEEEEeCCCCcCcCCCceeec----------cc--eEe-cCCceEEEecEEEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTH----------GG--TVL-LESGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~----------~~--~v~-~~~g~~i~yD~LVlAtGs~~~~ 205 (513)
.++.+..++.- ....+.+. ++ .+. ..+..++++|.||+|+|..|+.
T Consensus 331 ~~~~i~~~~~g--~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~ 389 (449)
T TIGR01316 331 QPVEIIGDEEG--NVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP 389 (449)
T ss_pred CcEEEEEcCCC--eEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc
Confidence 55555432110 00001110 00 000 1122479999999999998764
No 281
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.39 E-value=0.00017 Score=76.33 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=32.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
.+||||||||++||+||..|++. +++|+|+|+++..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~------G~~V~VlE~~~~~ 38 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARA------GLKVTVLEKNDRV 38 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhC------CCEEEEEEecCCC
Confidence 57999999999999999999994 5599999988743
No 282
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.39 E-value=0.00015 Score=71.83 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=38.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 76 ~~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
.....||||||||||||+||.+|.++....+.+++|.|+|+......
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gg 119 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGG 119 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCC
Confidence 34468999999999999999999887654567899999999874433
No 283
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.38 E-value=0.00018 Score=75.52 Aligned_cols=38 Identities=32% Similarity=0.590 Sum_probs=32.2
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcc
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~ 121 (513)
++|+|||||+|||+||+.|++.| .+++|+|+|+++...
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G----~~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKG----PDADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhC----CCCCEEEEEcCCCCc
Confidence 47999999999999999999853 236999999988553
No 284
>PRK12831 putative oxidoreductase; Provisional
Probab=97.36 E-value=0.0013 Score=69.24 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=30.5
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..++|||||||..|+.+|..|.+++. +|+|+.+++
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga------~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGA------EVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCC------EEEEEeecC
Confidence 35799999999999999999999654 899998866
No 285
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.35 E-value=0.0013 Score=67.66 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.++.=|||||.|+|+||..|-|-+. -++-+|+|+|+.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~--~pg~nIhIlE~~~ 39 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAK--MPGENIHILEELD 39 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCC--CCccceEEEeCCC
Confidence 3678899999999999999988654 4777999999876
No 286
>PLN02268 probable polyamine oxidase
Probab=97.35 E-value=0.00022 Score=74.66 Aligned_cols=38 Identities=26% Similarity=0.523 Sum_probs=32.9
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~ 123 (513)
++|+|||||.+||+||+.|.+ .+++|+|+|++++....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~------~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHD------ASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHh------CCCeEEEEeCCCCCCce
Confidence 479999999999999999998 45699999999976543
No 287
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.31 E-value=0.00026 Score=72.31 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=40.7
Q ss_pred eCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCCCC
Q 010331 373 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLL 430 (513)
Q Consensus 373 Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~~~ 430 (513)
.+++|++...||+|++|.+.... -...|..||.+++.|+...+.|+++.
T Consensus 321 l~~~l~~k~~~~l~~AGqi~g~~---------Gy~ea~a~G~~Ag~n~~~~~~g~~~~ 369 (436)
T PRK05335 321 LDPTLQLKKRPNLFFAGQITGVE---------GYVESAASGLLAGINAARLALGKEPV 369 (436)
T ss_pred CchhccccCCCCEEeeeeecCch---------HHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 44789998899999999999762 22388999999999999999988753
No 288
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.31 E-value=0.0017 Score=69.47 Aligned_cols=94 Identities=17% Similarity=0.302 Sum_probs=64.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhc-CCCeEEEEE
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLA-NTGVQFFKD 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~-~~~v~~~~~ 157 (513)
.++|+|||||+.|+.+|..|+..+ .+|+|+++.+.... . ..+.+.+. ..||+++.+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~------~~Vtlv~~~~~l~~--------------~---~~l~~~l~~~~gI~i~~~ 407 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIV------KHVTVLEFAPELKA--------------D---QVLQDKLRSLPNVTIITN 407 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC------CEEEEEEECccccc--------------c---HHHHHHHhcCCCcEEEEC
Confidence 469999999999999999999854 49999998764310 0 11223333 368999986
Q ss_pred -eEEEEeCCCCcCcCCCceeeccceEec---CCc--eEEEecEEEEeCCCCCCC
Q 010331 158 -RVKLLCPSDHLGVNGPMACTHGGTVLL---ESG--LIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 -~V~~id~~~~~~~~~~~v~~~~~~v~~---~~g--~~i~yD~LVlAtGs~~~~ 205 (513)
.++.+..++. .+. .+.+ .++ .++++|.+++|+|.+|+.
T Consensus 408 ~~v~~i~~~~g------~v~----~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~ 451 (517)
T PRK15317 408 AQTTEVTGDGD------KVT----GLTYKDRTTGEEHHLELEGVFVQIGLVPNT 451 (517)
T ss_pred cEEEEEEcCCC------cEE----EEEEEECCCCcEEEEEcCEEEEeECCccCc
Confidence 7888865421 010 1222 123 469999999999999864
No 289
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.30 E-value=0.00097 Score=66.60 Aligned_cols=34 Identities=38% Similarity=0.677 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+++|||||||.+|+++|..|.+. +++|+|+|++.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~------G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK------GIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc------CCeEEEEeecc
Confidence 47899999999999999999995 55999999865
No 290
>PRK07208 hypothetical protein; Provisional
Probab=97.29 E-value=0.00028 Score=74.82 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=33.4
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
++++|||||||++||+||+.|++. +++|+|+|+++....
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~------g~~v~v~E~~~~~GG 41 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKR------GYPVTVLEADPVVGG 41 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHC------CCcEEEEecCCCCCc
Confidence 357899999999999999999984 569999999886543
No 291
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.24 E-value=0.00036 Score=73.69 Aligned_cols=43 Identities=28% Similarity=0.419 Sum_probs=33.3
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
++|+|||||++||+||+.|.+.+.....+.+|+|+|+++....
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 5799999999999999999985310012479999999986533
No 292
>PLN02576 protoporphyrinogen oxidase
Probab=97.24 E-value=0.00037 Score=74.26 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=32.9
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
.++|+|||||++||+||++|.+. .+.+|+|+|+++....
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~-----~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASK-----HGVNVLVTEARDRVGG 50 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHh-----cCCCEEEEecCCCCCC
Confidence 46899999999999999999984 0569999999985543
No 293
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.22 E-value=0.0028 Score=68.40 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=62.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..|.+.+ .+|++|++.+.+.. ... ....+++..+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g------~~Vtli~~~~~~~~-------------~~~---~~~~~~~~~gV~i~~~~ 200 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYA------SKVTVIVREPDFTC-------------AKL---IAEKVKNHPKIEVKFNT 200 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccC------CEEEEEEeCCcccc-------------CHH---HHHHHHhCCCcEEEeCC
Confidence 479999999999999999998854 49999998774310 001 1122334568999876
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEecCCceEE----EecE----EEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV----EYDW----LVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i----~yD~----LVlAtGs~~~~ 205 (513)
.|+.++.+... ..+. .....+|+.. ++|. |++|+|.+|+.
T Consensus 201 ~V~~i~~~~~v----~~v~----~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~ 248 (555)
T TIGR03143 201 ELKEATGDDGL----RYAK----FVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSS 248 (555)
T ss_pred EEEEEEcCCcE----EEEE----EEECCCCCEEEEeccccccceEEEEEeCCCCCh
Confidence 78888754321 0000 0122345433 2555 99999998874
No 294
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.22 E-value=0.00035 Score=73.72 Aligned_cols=40 Identities=35% Similarity=0.572 Sum_probs=32.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
+++|+|||||++||+||+.|.+.+. ..+++|+|+|+++..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~--~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIP--ELPVELTLVEASDRV 41 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCC--CCCCcEEEEEcCCcC
Confidence 4689999999999999999998410 016799999998854
No 295
>PRK07233 hypothetical protein; Provisional
Probab=97.21 E-value=0.00035 Score=72.90 Aligned_cols=36 Identities=31% Similarity=0.524 Sum_probs=31.4
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
+|||||||++||+||..|++. +++|+|+|+++....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~------G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR------GHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCcEEEEEeCCCCCC
Confidence 699999999999999999984 559999999985533
No 296
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.19 E-value=0.0022 Score=49.82 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=44.6
Q ss_pred cEEEEeccCeecCCCChhHHHHHHHHHHhCCcEEEcCceeeEEeccc
Q 010331 247 IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 293 (513)
Q Consensus 247 ~vtli~~~~~ll~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~ 293 (513)
.|+++++.+.+++.+++...+.+++.|++.||++++++.+.++..++
T Consensus 24 ~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~ 70 (80)
T PF00070_consen 24 EVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDG 70 (80)
T ss_dssp EEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEET
T ss_pred EEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC
Confidence 59999999999999999999999999999999999999999999866
No 297
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.18 E-value=0.00058 Score=72.42 Aligned_cols=86 Identities=26% Similarity=0.285 Sum_probs=59.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEEe
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDR 158 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~ 158 (513)
.++|+|||+|.+|+++|..|++. +++|+++|+++. +....+.+.+++.|++++.+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~------------------~~~~~~~~~l~~~gv~~~~~~ 71 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDD------------------ERHRALAAILEALGATVRLGP 71 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCch------------------hhhHHHHHHHHHcCCEEEECC
Confidence 46899999999999999999884 459999998651 111233344556688776543
Q ss_pred EEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCCcccc
Q 010331 159 VKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEF 214 (513)
Q Consensus 159 V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG~~~~ 214 (513)
-.. ....+|.+|+++|..++.+.+....+.
T Consensus 72 ~~~--------------------------~~~~~D~Vv~s~Gi~~~~~~~~~a~~~ 101 (480)
T PRK01438 72 GPT--------------------------LPEDTDLVVTSPGWRPDAPLLAAAADA 101 (480)
T ss_pred Ccc--------------------------ccCCCCEEEECCCcCCCCHHHHHHHHC
Confidence 110 123589999999998876655444333
No 298
>PRK07538 hypothetical protein; Provisional
Probab=97.17 E-value=0.00042 Score=72.03 Aligned_cols=34 Identities=32% Similarity=0.604 Sum_probs=30.3
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
.+|+|||||+||+++|..|++ .+++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~------~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ------RGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh------CCCcEEEEEcCCc
Confidence 379999999999999999998 4569999999763
No 299
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.13 E-value=0.00099 Score=69.93 Aligned_cols=91 Identities=10% Similarity=0.177 Sum_probs=58.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEEe
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDR 158 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~ 158 (513)
.++|||||+|..|+..|..|.+... +|+|+.++...... ..+. ....++. ....
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~------~V~l~~r~~~~~~~-------------~~~~------~~~~~v~-~~~~ 257 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAK------EVHIASRASESDTY-------------EKLP------VPQNNLW-MHSE 257 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCC------eEEEEEeecccccc-------------ccCc------CCCCceE-ECCc
Confidence 4789999999999999999998543 99999886521100 0000 0011111 1123
Q ss_pred EEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCC
Q 010331 159 VKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209 (513)
Q Consensus 159 V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ip 209 (513)
+..+..+ ..|.+.||+.+++|.+|+|||-.++++-++
T Consensus 258 I~~~~~~--------------g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~ 294 (461)
T PLN02172 258 IDTAHED--------------GSIVFKNGKVVYADTIVHCTGYKYHFPFLE 294 (461)
T ss_pred ccceecC--------------CeEEECCCCCccCCEEEECCcCCccccccC
Confidence 3333211 247788898899999999999988766544
No 300
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.13 E-value=0.0022 Score=60.88 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=34.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
...++|+|||||..|+.+|++|.++.-=+.....|||+|+..
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 445899999999999999999999752123457999999876
No 301
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.00083 Score=67.77 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=35.2
Q ss_pred CCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCC
Q 010331 375 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428 (513)
Q Consensus 375 ~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~ 428 (513)
+.|++..++++|.+|-+... --...|..||-+++-|......+++
T Consensus 381 ~sLeTkkV~GLF~AGQINGT---------TGYEEAAAQGIiAGiNA~~~a~~~~ 425 (679)
T KOG2311|consen 381 PSLETKKVQGLFFAGQINGT---------TGYEEAAAQGIIAGINASLRASGKP 425 (679)
T ss_pred hhhhhhhccceEEeeeecCc---------cchHHHHhhhhHhhhhhhhhhcCCC
Confidence 46778789999999988764 2345788999999999887666655
No 302
>PLN02529 lysine-specific histone demethylase 1
Probab=97.09 E-value=0.0011 Score=72.90 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=39.7
Q ss_pred ccccccccccccCCCCCCCCCCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcc
Q 010331 57 GDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (513)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~ 121 (513)
..|..++....+ ..+....++|+|||||+|||+||..|++. +++|+|+|+++...
T Consensus 142 inc~vnp~~~~~----~~~~~~~~~v~viGaG~aGl~aA~~l~~~------g~~v~v~E~~~~~G 196 (738)
T PLN02529 142 INFGVSPSFASP----IPEEGTEGSVIIVGAGLAGLAAARQLLSF------GFKVVVLEGRNRPG 196 (738)
T ss_pred cceeecccccCC----CCcccCCCCEEEECcCHHHHHHHHHHHHc------CCcEEEEecCccCc
Confidence 345555443331 22234567999999999999999999984 55999999987543
No 303
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.08 E-value=0.0029 Score=70.93 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=60.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|||||||..|+.+|..+.+++. -+|+|+++++....... ...+ +.++..|++++..
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga-----~~Vtlv~r~~~~~~~~~--------------~~e~-~~~~~~GV~i~~~~ 629 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGA-----ERVTIVYRRSEEEMPAR--------------LEEV-KHAKEEGIEFLTLH 629 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCC-----CeEEEeeecCcccCCCC--------------HHHH-HHHHHcCCEEEecC
Confidence 4799999999999999999998643 14999998763211111 1111 1234567887654
Q ss_pred eEEEEeCCCCcCcCCCceeec----------cc--eEec-CCceEEEecEEEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTH----------GG--TVLL-ESGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~----------~~--~v~~-~~g~~i~yD~LVlAtGs~~~~ 205 (513)
.+..+..+++. ....+.+. +. .+.. .+..++++|.||+|+|..++.
T Consensus 630 ~~~~i~~~~~g--~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~ 688 (752)
T PRK12778 630 NPIEYLADEKG--WVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP 688 (752)
T ss_pred cceEEEECCCC--EEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc
Confidence 44444322110 00001000 00 0111 122469999999999998764
No 304
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.08 E-value=0.0026 Score=73.29 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=65.7
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|||||+|+.|+.+|..|.+.+. -.|+|+|..+.. ...+.+.+++.+|+++.+
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~-----~vV~vv~~~~~~-------------------~~~l~~~L~~~GV~i~~~~ 372 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGI-----AVVAIIDARADV-------------------SPEARAEARELGIEVLTGH 372 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-----ceEEEEccCcch-------------------hHHHHHHHHHcCCEEEcCC
Confidence 4799999999999999999998542 268999876522 112345566789999986
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEe--cCCceEEEecEEEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVL--LESGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~--~~~g~~i~yD~LVlAtGs~~~~ 205 (513)
.++.+..+++. ..+ .+. ..+++++++|.|+++.|..|+.
T Consensus 373 ~v~~i~g~~~v----~~V-----~l~~~~g~~~~i~~D~V~va~G~~Pnt 413 (985)
T TIGR01372 373 VVAATEGGKRV----SGV-----AVARNGGAGQRLEADALAVSGGWTPVV 413 (985)
T ss_pred eEEEEecCCcE----EEE-----EEEecCCceEEEECCEEEEcCCcCchh
Confidence 67777654321 001 122 1245689999999999998863
No 305
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.07 E-value=0.0046 Score=65.35 Aligned_cols=110 Identities=12% Similarity=-0.001 Sum_probs=61.9
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHh-HHHHhcCCCeEEEEE
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPR-FADLLANTGVQFFKD 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~-~~~~~~~~~v~~~~~ 157 (513)
.++|||||||+.|+.+|..+.+++. -+|++++..+...... ......+ ..... ..+.+.+.|++++.+
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga-----~~Vt~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~GV~i~~~ 349 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGA-----KSVTQRDIMPMPPSRR-----NKNNPWP-YWPMKLEVSNAHEEGVEREFN 349 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-----CeEEEccccCCCcccc-----ccccCCc-ccchHHHHHHHHHcCCeEEec
Confidence 5799999999999999998887532 2788777654211110 0000000 00011 123344678888876
Q ss_pred -eEEEEeCCC-CcCcCCCceeeccceEecCC---------ceEEEecEEEEeCCCCCCC
Q 010331 158 -RVKLLCPSD-HLGVNGPMACTHGGTVLLES---------GLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 -~V~~id~~~-~~~~~~~~v~~~~~~v~~~~---------g~~i~yD~LVlAtGs~~~~ 205 (513)
.++.|..++ +. ..+.+ ..+...+ ..++++|.||+|+|.+++.
T Consensus 350 ~~~~~i~~~~g~v----~~V~~--~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~ 402 (471)
T PRK12810 350 VQTKEFEGENGKV----TGVKV--VRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPE 402 (471)
T ss_pred cCceEEEccCCEE----EEEEE--EEEEecCCCccccCCceEEEECCEEEECcCcCCCc
Confidence 677775322 11 00111 0112212 2579999999999988753
No 306
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.03 E-value=0.00069 Score=72.13 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=31.4
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
+||||||||++||+||..|++ .+++|+|+|+++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~------~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAK------RGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCC
Confidence 589999999999999999999 45599999998754
No 307
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.02 E-value=0.00085 Score=68.21 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
.||+|||||++|+++|..|++. +.+|+|||+++..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~------G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL------NKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCCC
Confidence 5899999999999999999973 5599999997743
No 308
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.00 E-value=0.006 Score=68.97 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=62.9
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCC-CeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~-~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
.++|||||||..|+.+|..+.+. .+ -+|+||.+++.... |.. ...+.+.+ ..|++++..
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~Rl-----gGakeVTLVyRr~~~~M-PA~-------------~eEle~Al-eeGVe~~~~ 727 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRV-----PGVEKVTVVYRRTKQEM-PAW-------------REEYEEAL-EDGVEFKEL 727 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhc-----CCCceEEEEEccCcccc-ccc-------------HHHHHHHH-HcCCEEEeC
Confidence 57999999999999999988874 23 38999998763211 111 11222233 357887754
Q ss_pred -eEEEEeCCCCcCcCCC---ceeecc--ceEecCCceEEEecEEEEeCCCCCCC
Q 010331 158 -RVKLLCPSDHLGVNGP---MACTHG--GTVLLESGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 -~V~~id~~~~~~~~~~---~v~~~~--~~v~~~~g~~i~yD~LVlAtGs~~~~ 205 (513)
.+..|+.+.+...... .....+ ..+.+.++.++++|.||+|+|.+++.
T Consensus 728 ~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pnt 781 (1019)
T PRK09853 728 LNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDT 781 (1019)
T ss_pred CceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCCh
Confidence 5555543221100000 000001 12334556789999999999998763
No 309
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.99 E-value=0.0014 Score=64.99 Aligned_cols=106 Identities=20% Similarity=0.225 Sum_probs=69.7
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
.++.|-|||+|+-|-..|..|.+.-+ ..+.+|.=+=+..+. .+.+-|+.+...--+-+++.||.++.+
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r--~~g~eV~QvF~Ek~n----------m~kiLPeyls~wt~ekir~~GV~V~pn 413 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYR--NEGVEVHQVFEEKYN----------MEKILPEYLSQWTIEKIRKGGVDVRPN 413 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhh--ccCcEEEEeecccCC----------hhhhhHHHHHHHHHHHHHhcCceeccc
Confidence 35789999999999999999988643 345555433222211 011222233333334556778988865
Q ss_pred -eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 -~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
.|.++....+ +-.+.+.||.++.-|.+|+|+|..|+..
T Consensus 414 a~v~sv~~~~~-----------nl~lkL~dG~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 414 AKVESVRKCCK-----------NLVLKLSDGSELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred hhhhhhhhhcc-----------ceEEEecCCCeeeeeeEEEEecCCCchh
Confidence 7777643322 2257889999999999999999998743
No 310
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.97 E-value=0.0024 Score=62.96 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=30.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~ 117 (513)
....||+|||+|.+|-+.|..|+|.|+ +|.+|||.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGR------rVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGR------RVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCc------EEEEEecc
Confidence 345789999999999999999999555 99999984
No 311
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.95 E-value=0.00086 Score=67.99 Aligned_cols=38 Identities=34% Similarity=0.557 Sum_probs=32.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcc
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~ 121 (513)
..+|||||||.|||+||.+|.+.+. .+++|+|..+...
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf-----~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGF-----IDVLILEASDRIG 58 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCC-----ceEEEEEeccccC
Confidence 4599999999999999999997543 5999999988543
No 312
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.95 E-value=0.00099 Score=70.40 Aligned_cols=59 Identities=20% Similarity=0.147 Sum_probs=40.1
Q ss_pred CCCCeEeCCCcccc-----CCCCEEEEcccccc-cCCCCCCCCCchHHHHHHHHHHHHHHHHHHC
Q 010331 367 ARGQAETDETLCVK-----GHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425 (513)
Q Consensus 367 ~~G~i~Vd~~l~~~-----~~p~VfaiGD~a~~-~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~ 425 (513)
-.|.|++|++.|+. ..|++||+|.|+.. ......+-......++-.|+++++++....+
T Consensus 398 t~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~ 462 (466)
T PRK08274 398 TYLGLKVDEDARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQ 462 (466)
T ss_pred ecccEEECCCceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 35779999888874 47999999999753 2111111112345678889999999987654
No 313
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.95 E-value=0.00084 Score=70.64 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=31.2
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
+|+|||||++||+||+.|.+. +++|+|+|+++....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~------G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA------GHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCC
Confidence 599999999999999999984 559999999886443
No 314
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.91 E-value=0.00094 Score=69.43 Aligned_cols=33 Identities=33% Similarity=0.692 Sum_probs=28.2
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
||||||+|.||++||..+++ .+.+|+|||+.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae------~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE------AGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH------TTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhh------hcCeEEEEEeecc
Confidence 69999999999999999999 4559999999884
No 315
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.89 E-value=0.0022 Score=71.00 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=33.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcc
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~ 121 (513)
..+++|+|||||++|++||+.|.+ .+++|+|+|+++...
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~------~g~~v~v~E~~~r~G 274 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLS------MGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH------CCCcEEEEeccccCC
Confidence 446899999999999999999998 456999999988553
No 316
>PRK07121 hypothetical protein; Validated
Probab=96.86 E-value=0.0018 Score=68.98 Aligned_cols=36 Identities=17% Similarity=0.395 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
...||||||+|.||++||..+++ .+.+|+||||.+.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae------~G~~VillEK~~~ 54 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAA------AGARVLVLERAAG 54 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCCC
Confidence 46799999999999999999998 4569999999764
No 317
>PLN02568 polyamine oxidase
Probab=96.86 E-value=0.0015 Score=69.95 Aligned_cols=42 Identities=31% Similarity=0.488 Sum_probs=34.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcc
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~ 121 (513)
.++|+|||||+|||+||..|++.+. ...+++|+|+|+++...
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~-~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSA-ANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhccc-ccCCceEEEEeCCCCcC
Confidence 4789999999999999999998652 12357999999988543
No 318
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.85 E-value=0.0012 Score=65.23 Aligned_cols=38 Identities=29% Similarity=0.425 Sum_probs=30.4
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
+|+||||+|+||..+|.+|++. .+.+|+|||+.++...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~-----~~~~VlvlEaG~~~~~ 38 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEA-----GNKKVLVLEAGPRYPP 38 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTS-----TTS-EEEEESSBSCTT
T ss_pred CCEEEECcCHHHHHHHHHHhhC-----CCCcEEEEEccccCcc
Confidence 5899999999999999999983 4479999999885443
No 319
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.80 E-value=0.0092 Score=62.98 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=61.7
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||+.|+.+|..+.+++. -+|+||++++........ ..+ +.+...||+++..
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga-----~~Vtvv~r~~~~~~~~~~--------------~e~-~~~~~~GV~~~~~~ 341 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGA-----ASVTCAYRRDEANMPGSR--------------REV-ANAREEGVEFLFNV 341 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-----CeEEEEEecCcccCCCCH--------------HHH-HHHHhcCCEEEecC
Confidence 5799999999999999999887542 279999987643221110 111 2234568888776
Q ss_pred eEEEEeCCCCcCcCCCceeec----------cc--e-EecCCceEEEecEEEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTH----------GG--T-VLLESGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~----------~~--~-v~~~~g~~i~yD~LVlAtGs~~~~ 205 (513)
.+..+..++.. ....+.+. ++ . ....+..++++|.||+|+|.+++.
T Consensus 342 ~~~~i~~~~~g--~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 400 (467)
T TIGR01318 342 QPVYIECDEDG--RVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHA 400 (467)
T ss_pred CcEEEEECCCC--eEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCc
Confidence 56666432110 00001100 00 0 001223479999999999998763
No 320
>PLN02676 polyamine oxidase
Probab=96.80 E-value=0.0021 Score=68.08 Aligned_cols=38 Identities=24% Similarity=0.485 Sum_probs=32.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCC-eEEEEeCCCCccc
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVF 122 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~-~V~lIe~~~~~~~ 122 (513)
.++|+|||||++||+||++|++. +. +|+|+|+++....
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~------g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEA------GIEDILILEATDRIGG 64 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc------CCCcEEEecCCCCCCC
Confidence 57899999999999999999984 44 6999999886543
No 321
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.78 E-value=0.0047 Score=64.54 Aligned_cols=54 Identities=24% Similarity=0.155 Sum_probs=37.6
Q ss_pred CCCeEeCCCccccC-----CCCEEEEccccc--ccCCCCCCC--CCchHHHHHHHHHHHHHHHHHH
Q 010331 368 RGQAETDETLCVKG-----HPRIFALGDSSA--LRDSSGRPL--PATAQVAFQQADFAGWNLWAAI 424 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~-----~p~VfaiGD~a~--~~~~~g~~~--~~~a~~A~~qg~~~a~ni~~~l 424 (513)
.|.+++|++.|+.+ .|++||+|.|+. +. |..+ ......|+--|+++++++.+..
T Consensus 368 ~GGl~id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~---g~~y~~G~~~~~a~~~GriAg~~aa~~~ 430 (432)
T TIGR02485 368 RYGLVVDATARVRLNDAVAPDNLFAAGTNMAGNVL---GQGYLAGAGLTIAAVFGRIAGRAAARLA 430 (432)
T ss_pred ccceEECCCceEECCCCCCCCCeeecccccccccc---cCCCccchhhHHHHHHHHHHHHHHHHhh
Confidence 46688888888754 499999999863 31 1111 2234577888999999987653
No 322
>PLN02487 zeta-carotene desaturase
Probab=96.77 E-value=0.0028 Score=68.05 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
.+++|+|||||++|+++|..|.+. +++|+|+|+.+..
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~------g~~v~i~E~~~~~ 110 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRPFI 110 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC------CCeeEEEecCCCC
Confidence 456999999999999999999984 5599999998854
No 323
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.76 E-value=0.0019 Score=70.07 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=33.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 76 ~~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
.....||||||+|.||++||..+++ .+.+|+|||+.+..
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~------~G~~v~llEk~~~~ 44 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARK------LGLDVVVLEKEPVF 44 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHH------cCCeEEEEecCCCC
Confidence 3446799999999999999999998 45699999998743
No 324
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.72 E-value=0.0027 Score=69.36 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..||||||||.||+.||..+++ .+.+|+||||..
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae------~G~~VilveK~~ 83 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSE------HGFNTACITKLF 83 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHh------cCCcEEEEEcCC
Confidence 4699999999999999999987 566999999976
No 325
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=96.72 E-value=0.0017 Score=69.21 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
.||||||||.+||++|..|++. +++|+|+|+++.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~------G~~V~vlE~~~~ 34 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVK------GAKVLVLERYLI 34 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHC------CCcEEEEECCCC
Confidence 4799999999999999999994 559999999874
No 326
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.69 E-value=0.014 Score=66.27 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=59.7
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCC-eEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~-~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (513)
..++|||||||..|+.+|..+.+. .+. +|+||.+++... .|.. ...+.+.+ ..||+++.
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl-----~Ga~kVtLVyRr~~~~-Mpa~-------------~eEl~~al-eeGVe~~~ 724 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRV-----PGVEKVTVVYRRTKRY-MPAS-------------REELEEAL-EDGVDFKE 724 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHh-----CCCceEEEEEccCccc-cccC-------------HHHHHHHH-HcCCEEEe
Confidence 357999999999999999998874 233 899999876311 1111 11222233 35777775
Q ss_pred E-eEEEEeCCCCcCcCCCc---eeeccce--EecCCceEEEecEEEEeCCCCCCC
Q 010331 157 D-RVKLLCPSDHLGVNGPM---ACTHGGT--VLLESGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 157 ~-~V~~id~~~~~~~~~~~---v~~~~~~--v~~~~g~~i~yD~LVlAtGs~~~~ 205 (513)
. .+..+. +.+....... ....++. +...+..++++|.||+|+|..++.
T Consensus 725 ~~~p~~I~-~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt 778 (1012)
T TIGR03315 725 LLSPESFE-DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDT 778 (1012)
T ss_pred CCceEEEE-CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCCh
Confidence 4 444443 1110000000 0000111 112223479999999999988753
No 327
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.65 E-value=0.0019 Score=68.21 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=30.7
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcc
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~ 121 (513)
+|+|||||++|+++|..|.+. +++|+|+|+++...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~------G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA------GHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCcEEEEEecCCCC
Confidence 589999999999999999984 56999999988553
No 328
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.62 E-value=0.002 Score=72.09 Aligned_cols=35 Identities=40% Similarity=0.661 Sum_probs=30.9
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
+|+|||||+||+++|..|++. .++++|+|+|+++.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~----~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLL----DPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHh----CCCCeEEEEecCCC
Confidence 799999999999999999984 13679999999874
No 329
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.60 E-value=0.0022 Score=69.62 Aligned_cols=58 Identities=21% Similarity=0.126 Sum_probs=40.2
Q ss_pred CCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHC
Q 010331 367 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 425 (513)
Q Consensus 367 ~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~ 425 (513)
..|.|.||.+.++ +.|++||+|+|+....-....-......|.-.|+.+++++...+.
T Consensus 354 ~~GGi~vd~~~~t-~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~ 411 (589)
T PRK08641 354 SMGGLWVDYDQMT-NIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIK 411 (589)
T ss_pred eCCCeEECCCCCe-ECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 3578999988887 799999999997432110111123445677889999998876654
No 330
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.58 E-value=0.018 Score=63.44 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=30.1
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..++|||||||..|+.+|..+.+++. -+|+||.+++
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga-----~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGA-----ESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-----CeEEEeeecC
Confidence 35799999999999999999988542 2799998776
No 331
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.57 E-value=0.0088 Score=57.71 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=28.0
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.|||||||.|||+|+..+-..+. .|+|+|+..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg------~V~llek~~ 42 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGG------IVILLEKAG 42 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCC------eEEEEeccC
Confidence 69999999999999999987543 699999876
No 332
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.55 E-value=0.0025 Score=68.14 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=30.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
..||||||+| ||++||.++++ .+.+|+|||+.+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~------~G~~V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAR------EGLSVALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHH------CCCcEEEEecCCC
Confidence 5799999999 99999999998 5669999998764
No 333
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.54 E-value=0.0059 Score=61.47 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=30.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
...++|+|||||..+..++..|.+.+ +..+|++|-+++.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~----~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRG----PEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-----TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCC----CCcEEEEEECCCc
Confidence 45689999999999999999999853 4479999999873
No 334
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.53 E-value=0.0033 Score=60.70 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=32.1
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcc
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~ 121 (513)
.|++|||+|.+|+.+|..|+++|+ +|+|||++++..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk------~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGK------RVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCC------EEEEEeccccCC
Confidence 689999999999999999888665 999999999553
No 335
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.53 E-value=0.003 Score=68.97 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
..+||||||||..|.++|+.|++ .+++|+|||+++.
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~------rGl~V~LvE~~d~ 105 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAAT------RGLRVGLVEREDF 105 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHh------CCCEEEEEecccc
Confidence 34899999999999999999998 4569999999863
No 336
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.52 E-value=0.0033 Score=62.95 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=34.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
.+..+|+|||||.+||++|++|+++. ++..|+|+|+.+..
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~----p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLG----PDVTITLFEASPRV 48 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcC----CCceEEEEecCCcc
Confidence 34579999999999999999999964 67789999998854
No 337
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.50 E-value=0.014 Score=56.30 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=32.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..++|+||||||..|++.|++|.- +.++.+|.|+|+..
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~l----rhp~l~V~vleke~ 83 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSL----RHPSLKVAVLEKEK 83 (453)
T ss_pred cccccEEEECCceeehhhhHHHhh----cCCCceEEeeehhh
Confidence 456899999999999999999864 24789999999876
No 338
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.49 E-value=0.0032 Score=68.52 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
...||||||||.||++||..+++ .+.+|+||||..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~------~G~~V~lveK~~ 45 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAE------AGLKTACITKVF 45 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHH------cCCcEEEEEccC
Confidence 35799999999999999999988 456999999975
No 339
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.43 E-value=0.016 Score=66.11 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=29.9
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.++|||||||..|+-+|..+.++| .+|+++.+++
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~G------a~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLG------GNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC------CEEEEEEecC
Confidence 479999999999999999999864 3899998875
No 340
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.42 E-value=0.0036 Score=67.55 Aligned_cols=34 Identities=32% Similarity=0.598 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..||||||+|.|||+||..+++ .+.+|+|||+.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~------~G~~VivlEK~~ 37 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELAD------AGKRVLLLDQEN 37 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCC
Confidence 4799999999999999999998 566999999977
No 341
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.41 E-value=0.0035 Score=68.34 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=30.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..||||||||.||+.||..+++ .+.+|+||||..
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~------~G~~V~lveK~~ 62 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVE------LGYKTACISKLF 62 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHH------cCCcEEEEeccC
Confidence 5799999999999999999987 566999999976
No 342
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.038 Score=54.57 Aligned_cols=92 Identities=22% Similarity=0.355 Sum_probs=64.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhc-CCCeEEEEE
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLA-NTGVQFFKD 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~-~~~v~~~~~ 157 (513)
.++|+|||||-+++..|..|.+... +|+||=+++.+.-. ..+.+.++ ..++.++.+
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~------~Vtlv~r~~~~ra~-----------------~~~~~~l~~~~~i~~~~~ 199 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAK------KVTLVHRRDEFRAE-----------------EILVERLKKNVKIEVLTN 199 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcC------eEEEEecCcccCcC-----------------HHHHHHHHhcCCeEEEeC
Confidence 4699999999999999999999754 89999988733211 11222222 337888876
Q ss_pred -eEEEEeCCCCcCcCCCceeeccceEecCC----ceEEEecEEEEeCCCCCCC
Q 010331 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLES----GLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 -~V~~id~~~~~~~~~~~v~~~~~~v~~~~----g~~i~yD~LVlAtGs~~~~ 205 (513)
.+..+..++ . . .|.+.+ ..++.+|.++++.|..|+.
T Consensus 200 ~~i~ei~G~~-v----~-------~v~l~~~~~~~~~~~~~gvf~~iG~~p~~ 240 (305)
T COG0492 200 TVVKEILGDD-V----E-------GVVLKNVKGEEKELPVDGVFIAIGHLPNT 240 (305)
T ss_pred CceeEEecCc-c----c-------eEEEEecCCceEEEEeceEEEecCCCCch
Confidence 788886653 1 1 133322 2478999999999998864
No 343
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.31 E-value=0.0041 Score=67.47 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=33.3
Q ss_pred CCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCC
Q 010331 375 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 426 (513)
Q Consensus 375 ~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~ 426 (513)
...+| +.|++||+|||+.. ....++..+..+|.+++.++...+..
T Consensus 400 ~~~~T-~i~gLyA~Ge~~~~------~~h~l~~nsl~eg~~ag~~a~~~~~~ 444 (614)
T TIGR02061 400 YNRMT-TVEGLFTCGDGVGA------SPHKFSSGSFTEGRIAAKAAVRWILD 444 (614)
T ss_pred cCCcc-ccCCEEeceecccC------cchhhHHhHHHHHHHHHHHHHHHHHh
Confidence 34455 79999999999763 11346777888899999988876643
No 344
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.30 E-value=0.0045 Score=67.15 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
..||||||+|.||++||..+++ .+.+|+|||+.+.
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae------~G~~VivlEk~~~ 45 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAA------RGLDTLVVEKSAH 45 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHH------CCCcEEEEEcCCC
Confidence 5799999999999999999998 4569999999873
No 345
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.26 E-value=0.0044 Score=67.23 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=30.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..||||||||.||++||..+++ .+.+|+||||..
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~------~G~~V~lleK~~ 40 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQ------SGQSCALLSKVF 40 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHH------cCCcEEEEEccC
Confidence 4689999999999999999987 466999999975
No 346
>PRK12839 hypothetical protein; Provisional
Probab=96.23 E-value=0.0061 Score=65.86 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=32.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
....+|||||+|.+|++||..+++ .+.+|+|||+...
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~------~g~~v~~iek~~~ 42 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAY------GGAKVLVVEKAST 42 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCC
Confidence 346799999999999999999998 4569999999764
No 347
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.22 E-value=0.023 Score=60.30 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=29.8
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
..++|+|||||+.|+.+|..+.+++ ..+|+++|..+.
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~g-----a~~V~vv~~~~~ 318 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHG-----AASVHQFEIMPK 318 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-----CCEEEEEEecCC
Confidence 3579999999999999988777753 238999998764
No 348
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.21 E-value=0.031 Score=61.61 Aligned_cols=104 Identities=14% Similarity=0.101 Sum_probs=59.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|||||||..|+.+|..+.+++. -+|+++.+++...+ |... ...+.+++.|++|+..
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga-----~~Vt~i~~~~~~~~-~~~~--------------~e~~~~~~~Gv~~~~~~ 527 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGA-----SNVTCAYRRDEANM-PGSK--------------KEVKNAREEGANFEFNV 527 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC-----CeEEEeEecCCCCC-CCCH--------------HHHHHHHHcCCeEEecc
Confidence 4689999999999999998887532 27999987653322 1111 1112344668888765
Q ss_pred eEEEEeCCCCcCcCCCceeec----------cc--eEec-CCceEEEecEEEEeCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTH----------GG--TVLL-ESGLIVEYDWLVLSLGAEPK 204 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~----------~~--~v~~-~~g~~i~yD~LVlAtGs~~~ 204 (513)
.++.+..+++- ....+.+. ++ .+.. .+..++++|.||+|+|..++
T Consensus 528 ~~~~i~~~~~g--~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 528 QPVALELNEQG--HVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH 585 (654)
T ss_pred CcEEEEECCCC--eEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence 55555322110 00001100 00 0001 11236999999999998876
No 349
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.20 E-value=0.0055 Score=66.13 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=31.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
..||||||+|.||++||..+++ .+.+|+|||+.+.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~------~G~~v~liEk~~~ 40 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAAD------SGLEPLIVEKQDK 40 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCC
Confidence 5799999999999999999998 4569999999763
No 350
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.18 E-value=0.0066 Score=65.53 Aligned_cols=36 Identities=17% Similarity=0.448 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
..||||||+|++|++||..+++ .+.+|+|||+.+..
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~------~G~~v~llEk~~~~ 42 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAH------RGLSTVVVEKAPHY 42 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHH------CCCCEEEEeCCCCC
Confidence 5799999999999999999998 45699999998743
No 351
>PRK02106 choline dehydrogenase; Validated
Probab=96.16 E-value=0.0067 Score=65.63 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=32.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
.+|+||||||.||+.+|.+|++ +++.+|+|||+.+.
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae-----~~g~~VlvlEaG~~ 40 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSE-----DPDVSVLLLEAGGP 40 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHh-----CCCCeEEEecCCCc
Confidence 4799999999999999999998 36779999999864
No 352
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.12 E-value=0.01 Score=63.62 Aligned_cols=99 Identities=21% Similarity=0.394 Sum_probs=67.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEEe
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDR 158 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~ 158 (513)
+.+-+|||||-=|+.+|..|.+. +.++++++-.++.- -. +++. .--.-++..+++.|++|+.+.
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~------Gm~~~Vvh~~~~lM-----er----QLD~-~ag~lL~~~le~~Gi~~~l~~ 208 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDL------GMEVTVVHIAPTLM-----ER----QLDR-TAGRLLRRKLEDLGIKVLLEK 208 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhC------CCceEEEeecchHH-----HH----hhhh-HHHHHHHHHHHhhcceeeccc
Confidence 45689999999999999999984 55999987555211 11 1111 112344556667899998762
Q ss_pred -EEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCC
Q 010331 159 -VKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204 (513)
Q Consensus 159 -V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~ 204 (513)
.+.|-.+.+. -.+.++||..+++|.+|.|+|-+|+
T Consensus 209 ~t~ei~g~~~~-----------~~vr~~DG~~i~ad~VV~a~GIrPn 244 (793)
T COG1251 209 NTEEIVGEDKV-----------EGVRFADGTEIPADLVVMAVGIRPN 244 (793)
T ss_pred chhhhhcCcce-----------eeEeecCCCcccceeEEEecccccc
Confidence 2333222221 1478899999999999999999987
No 353
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.05 E-value=0.017 Score=55.30 Aligned_cols=41 Identities=32% Similarity=0.401 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhcccc-CCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQ-DDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~-~~~~~~V~lIe~~~ 118 (513)
+.++|+|||+|..|++.|..+.++... .-+..+|++++.+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 357999999999999999887775421 12567999997654
No 354
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.04 E-value=0.012 Score=62.62 Aligned_cols=36 Identities=19% Similarity=0.045 Sum_probs=31.9
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcc
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~ 121 (513)
+||+|||+|++|+.+|+.|++ .+++|++||++....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~------~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD------AGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH------CCCeEEEEeccCccC
Confidence 489999999999999999998 456999999988554
No 355
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.04 E-value=0.018 Score=53.41 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=30.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.++|+|||||..|...+..|.+ .+.+|+||+++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~------~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLK------AGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHH------CCCEEEEEcCCC
Confidence 4699999999999999999998 456999999854
No 356
>PLN02815 L-aspartate oxidase
Probab=96.01 E-value=0.0074 Score=65.37 Aligned_cols=55 Identities=15% Similarity=0.006 Sum_probs=37.8
Q ss_pred CCCeEeCCCccccCCCCEEEEcccccccCCCCC--CCCCchHHHHHHHHHHHHHHHHHH
Q 010331 368 RGQAETDETLCVKGHPRIFALGDSSALRDSSGR--PLPATAQVAFQQADFAGWNLWAAI 424 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~--~~~~~a~~A~~qg~~~a~ni~~~l 424 (513)
.|.|.||...|+ +.||+||+|+|+.. ...|. .-......+.-.|+.++.++...+
T Consensus 377 ~GGi~vD~~~~t-~IpGLyAaGE~a~~-G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~ 433 (594)
T PLN02815 377 CGGVRTGLQGET-NVQGLYAAGEVACT-GLHGANRLASNSLLEALVFARRAVQPSIDHM 433 (594)
T ss_pred CCCeeECCCCce-ecCCEEeccccccc-CCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 577999999998 89999999999742 01121 112234566777888888876544
No 357
>PRK13984 putative oxidoreductase; Provisional
Probab=96.01 E-value=0.052 Score=59.36 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=27.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEe
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVD 115 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe 115 (513)
.++|||||||+.|+.+|..|.+++.......+|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4799999999999999999987642111224677764
No 358
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.99 E-value=0.011 Score=63.92 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
....||||||+| +|++||..+++ .+.+|+|||+.+....
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~------~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHE------LGLSVLIVEKSSYVGG 52 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHH------CCCcEEEEecCCCCcC
Confidence 346899999999 99999999998 5669999999875433
No 359
>PLN03000 amine oxidase
Probab=95.93 E-value=0.011 Score=65.86 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
..++|+|||||++|+.||..|.+. +++|+|+|+++....
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~------G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF------GFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC------CCcEEEEEccCcCCC
Confidence 458999999999999999999984 559999999885433
No 360
>PRK07395 L-aspartate oxidase; Provisional
Probab=95.90 E-value=0.0092 Score=64.24 Aligned_cols=34 Identities=32% Similarity=0.493 Sum_probs=29.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
..||||||+|.||++||..+++ +.+|+||||.+.
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~~-------G~~V~lieK~~~ 42 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLPS-------HLRVGLITKDTL 42 (553)
T ss_pred cCCEEEECccHHHHHHHHHhhc-------CCCEEEEEccCC
Confidence 4799999999999999999853 459999999763
No 361
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.88 E-value=0.0068 Score=65.94 Aligned_cols=54 Identities=20% Similarity=0.139 Sum_probs=38.1
Q ss_pred CCCeEeCCCccccCCCCEEEEcccccccCCCCCC-C-CCchHHHHHHHHHHHHHHHHHH
Q 010331 368 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRP-L-PATAQVAFQQADFAGWNLWAAI 424 (513)
Q Consensus 368 ~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~-~-~~~a~~A~~qg~~~a~ni~~~l 424 (513)
.|.|.+|...++ +.|++||+|+|+... .|.. + ......+.-.|+.++.++...+
T Consensus 370 ~gG~~~d~~~~t-~i~gL~a~Ge~~~~~--hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 370 MGGLWVDYDQMT-NIPGLFAAGECDFSQ--HGANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred CCCeeECCCCcc-cCCCEEECcccccCc--CCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 477999999898 899999999997532 1211 1 1233467778888888877654
No 362
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=95.83 E-value=0.014 Score=63.42 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
...||||||+|.+|+++|..+++ .+.+|+|||+++..
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~------~g~~v~~iek~~~~ 47 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAW------HGLKVIVVEKDPVF 47 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCC
Confidence 35799999999999999999998 45699999997643
No 363
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=95.82 E-value=0.013 Score=68.69 Aligned_cols=36 Identities=28% Similarity=0.557 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
...||||||+|.||++||..+++ .+.+|+||||.+.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae------~Ga~VivlEK~~~ 443 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAAS------CGAQVILLEKEAK 443 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEEccCC
Confidence 35799999999999999999998 5669999999763
No 364
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.81 E-value=0.0029 Score=57.31 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=31.4
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+|||||+|.|||+||+.+.+ +.++++|.|||.+-
T Consensus 77 sDvviVGAGSaGLsAAY~I~~----~rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAK----NRPDLKVAIIESSV 111 (328)
T ss_pred cceEEECCCccccceeeeeec----cCCCceEEEEEeee
Confidence 589999999999999999987 35899999999864
No 365
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.75 E-value=0.072 Score=58.60 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=29.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
.++|+|||||..|+.+|..+.++|- -+|+++.+++.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga-----~~Vt~v~rr~~ 486 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNA-----ASVTCAYRRDE 486 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC-----CeEEEeeecCc
Confidence 5799999999999999988877542 27999988653
No 366
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=95.71 E-value=0.17 Score=50.91 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=56.6
Q ss_pred HHHhcCcEEEEeccCeecCC--CChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCc
Q 010331 241 RLEEKGIVQAINVETTICPT--GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDK 318 (513)
Q Consensus 241 ~l~~~~~vtli~~~~~ll~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (513)
.....+.-+..+...++.|. -...+-+.+...+++.||+++++++|.+++.++ ..
T Consensus 87 ~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~-----------------------~~ 143 (408)
T COG2081 87 WVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD-----------------------SG 143 (408)
T ss_pred HHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC-----------------------ce
Confidence 33444544445555666665 234566777889999999999999999999865 34
Q ss_pred eEEEecccccCCcceEEeeceEEEecCCC
Q 010331 319 YILELQPAIKGLESQIFEADLVLWTVGSK 347 (513)
Q Consensus 319 v~v~~~~~~~~~~g~~i~aD~vi~a~G~~ 347 (513)
..+.+. +++++.||.+|+|+|-.
T Consensus 144 f~l~t~------~g~~i~~d~lilAtGG~ 166 (408)
T COG2081 144 FRLDTS------SGETVKCDSLILATGGK 166 (408)
T ss_pred EEEEcC------CCCEEEccEEEEecCCc
Confidence 556543 67789999999999954
No 367
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.65 E-value=0.074 Score=61.34 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=29.0
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..++|||||||..|+-+|..+.++|. -.|+++.++.
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa-----~~Vtiv~rr~ 605 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGA-----PTVRCVYRRS 605 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEEeecC
Confidence 35799999999999999999988653 2578887654
No 368
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.65 E-value=0.014 Score=61.23 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=34.8
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~ 123 (513)
+..||+|||||..|+.+|+.++. .|++|+|+|++++-..+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~------RGl~v~LvE~~D~AsGT 50 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG------RGLKVALVEKGDLASGT 50 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh------CCCeEEEEecCcccCcc
Confidence 56899999999999999999998 56699999999965443
No 369
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.57 E-value=0.014 Score=62.46 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+.||||||||.|||.||..+++. +.+|+|+|+.+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~------g~~V~l~~K~~ 39 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEA------GLKVALLSKAP 39 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhc------CCcEEEEEccc
Confidence 457999999999999999999984 46999999966
No 370
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=95.54 E-value=0.11 Score=50.68 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=30.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||+|.|||-||.+|+.. +.+|+|+|++.
T Consensus 5 ~~dvivvgaglaglvaa~elA~a------G~~V~ildQEg 38 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADA------GKRVLILDQEG 38 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhc------CceEEEEcccc
Confidence 47899999999999999999984 45999999876
No 371
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.49 E-value=0.021 Score=61.92 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=31.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
..+|||||+|.+|++||..+++ .+.+|+|||+.+.
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~------~g~~v~l~ek~~~ 50 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAI------AGLKVLLVERTEY 50 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCC
Confidence 5799999999999999999998 4569999999764
No 372
>PLN02976 amine oxidase
Probab=95.49 E-value=0.018 Score=66.67 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
..++|+|||||++|+++|..|.+ .+++|+|+|+++..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~------~G~~V~VlEa~~~v 728 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQR------QGFSVTVLEARSRI 728 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHH------CCCcEEEEeeccCC
Confidence 35789999999999999999998 45699999998754
No 373
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.43 E-value=0.018 Score=61.79 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..++|+||||+|.||..+|.+|.+ ++.+|+|+|+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~------~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSD------AGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcC------CCCeEEEEeCCC
Confidence 446899999999999999999996 778999999985
No 374
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.34 E-value=0.038 Score=58.04 Aligned_cols=34 Identities=32% Similarity=0.552 Sum_probs=30.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.++|+|+|+|..|+.+|..|++. +++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 47899999999999999999984 55999999865
No 375
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=95.32 E-value=0.057 Score=57.23 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=35.1
Q ss_pred chHhHHHHhcCCCeEEEEE-eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCC
Q 010331 139 IAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201 (513)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs 201 (513)
+...+....++.|..++.. .|++|...... + +-|.+..| .++..++|-|+|.
T Consensus 189 lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~---------~gVeT~~G-~iet~~~VNaaGv 241 (856)
T KOG2844|consen 189 LCQALARAASALGALVIENCPVTGLHVETDK-F---------GGVETPHG-SIETECVVNAAGV 241 (856)
T ss_pred HHHHHHHHHHhcCcEEEecCCcceEEeecCC-c---------cceeccCc-ceecceEEechhH
Confidence 3344555566789999876 88888754320 1 13666667 6888999999984
No 376
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.31 E-value=0.018 Score=61.96 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=30.0
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
|+||||||.||+.+|.+|++. ..++|+|||+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~-----~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSED-----VSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccC-----CCCeEEEEecCCC
Confidence 689999999999999999972 3479999999874
No 377
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.17 E-value=0.066 Score=57.27 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=27.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.++|+|||+|..|.-.|..|.+.. -+|++.-|+.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a------~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVA------KKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTS------CCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhc------CCeEEEEecc
Confidence 589999999999999999998853 3788877766
No 378
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.15 E-value=0.027 Score=53.12 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=29.7
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
++++|||+|.-|.+.|..|.+. +.+|++||+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCH
Confidence 4799999999999999999984 45999999877
No 379
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.03 E-value=0.14 Score=55.49 Aligned_cols=102 Identities=18% Similarity=0.127 Sum_probs=60.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (513)
.++|+|||||..|+.+|..+.+++. -+|+|+.+.+...+.. ....+.+. .+.+++++..
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga-----~~v~ii~r~~~~~~~~--------------~~~~~~~a-~~~GVki~~~~ 326 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGA-----EEVTIVYRRTREDMPA--------------HDEEIEEA-LREGVEINWLR 326 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCC-----CEEEEEEecCcccCCC--------------CHHHHHHH-HHcCCEEEecC
Confidence 5789999999999999998887642 3788888765321111 11122222 2457888764
Q ss_pred eEEEEeCCCCcCcCCCceeeccceEe-------------cCCceEEEecEEEEeCCCCCCC
Q 010331 158 RVKLLCPSDHLGVNGPMACTHGGTVL-------------LESGLIVEYDWLVLSLGAEPKL 205 (513)
Q Consensus 158 ~V~~id~~~~~~~~~~~v~~~~~~v~-------------~~~g~~i~yD~LVlAtGs~~~~ 205 (513)
.+..|..++.. .. .+.+. .+. ..+..++++|.||+|+|..+..
T Consensus 327 ~~~~i~~~~~~-~~--~v~~~--~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~ 382 (564)
T PRK12771 327 TPVEIEGDENG-AT--GLRVI--TVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDS 382 (564)
T ss_pred CcEEEEcCCCC-EE--EEEEE--EEEecccCCCCCeeecCCceEEEECCEEEECcCCCCch
Confidence 66666543210 00 01000 011 1122479999999999988753
No 380
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.03 E-value=0.072 Score=49.08 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEE
Q 010331 263 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 342 (513)
Q Consensus 263 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~ 342 (513)
+.+.+++++..++.+++++++++|+++..++ ++..++++ +++++.||.||+
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~-----------------------~~w~v~~~------~~~~~~a~~VVl 132 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRDG-----------------------DGWTVTTR------DGRTIRADRVVL 132 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEET-----------------------TTEEEEET------TS-EEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEec-----------------------cEEEEEEE------ecceeeeeeEEE
Confidence 4566788888999999999999999998865 45667664 567899999999
Q ss_pred ecCC--CCCC
Q 010331 343 TVGS--KPLL 350 (513)
Q Consensus 343 a~G~--~p~~ 350 (513)
|+|. .|+.
T Consensus 133 AtG~~~~p~~ 142 (203)
T PF13738_consen 133 ATGHYSHPRI 142 (203)
T ss_dssp ---SSCSB--
T ss_pred eeeccCCCCc
Confidence 9997 5553
No 381
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=94.78 E-value=0.059 Score=57.26 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=35.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 76 ~~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
....+|.+|||||.||...|.+|.+ .+..+|+|+|+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSE-----n~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSE-----NPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhcc-----CCCceEEEEecCCCC
Confidence 4557999999999999999999998 478999999997754
No 382
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.67 E-value=0.046 Score=44.69 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=29.7
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..++|+|||||..|..-+..|.+ .+.+|+||.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~------~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE------AGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC------CTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHh------CCCEEEEECCch
Confidence 35799999999999999999987 567999998864
No 383
>PLN02785 Protein HOTHEAD
Probab=94.48 E-value=0.057 Score=58.54 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
..+|+||||||.||+.+|.+|.+ ..+|+|||+++.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-------~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-------NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-------CCcEEEEecCCC
Confidence 35899999999999999999986 259999999874
No 384
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.27 E-value=0.1 Score=51.17 Aligned_cols=103 Identities=21% Similarity=0.295 Sum_probs=65.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEE
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (513)
..++|+||||||+.++..|--++-++. ++-|+=|.+. ++.+. .+.+.....+.+...|++++.
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgs------ethlfiR~~k---------vLR~F--D~~i~~~v~~~~~~~ginvh~ 249 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGS------ETHLFIRQEK---------VLRGF--DEMISDLVTEHLEGRGINVHK 249 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCC------eeEEEEecch---------hhcch--hHHHHHHHHHHhhhcceeecc
Confidence 456899999999999999988887654 6666555441 11111 113344455667778899886
Q ss_pred E-eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCC
Q 010331 157 D-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 157 ~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~ 206 (513)
. .++.+...... ...+....+.....|.|+.|+|-.|+.-
T Consensus 250 ~s~~~~v~K~~~g----------~~~~i~~~~~i~~vd~llwAiGR~Pntk 290 (478)
T KOG0405|consen 250 NSSVTKVIKTDDG----------LELVITSHGTIEDVDTLLWAIGRKPNTK 290 (478)
T ss_pred cccceeeeecCCC----------ceEEEEeccccccccEEEEEecCCCCcc
Confidence 4 55555332210 0124445554556999999999887643
No 385
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.04 E-value=0.19 Score=46.98 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=29.2
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~ 117 (513)
..++|+|||||..+..=+..|.+ .+.+|+||.+.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~------~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLK------KGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh------CCCEEEEEcCC
Confidence 35799999999999988888887 56799999875
No 386
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.80 E-value=0.11 Score=45.98 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=29.1
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~ 117 (513)
..++|+|||||..|..-|..|.+ .+.+|+||++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~------~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKD------TGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh------CCCEEEEEcCc
Confidence 35799999999999999999987 55699999653
No 387
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=93.65 E-value=0.062 Score=54.47 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=32.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCc
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~ 120 (513)
...+|+||||+|+.||.||.+|+|.+ .+|.++|++..+
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g------~~V~vlerrhv~ 49 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYG------QSVAVLERRHVI 49 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcC------cceEEEEEeeec
Confidence 34589999999999999999999954 499999998533
No 388
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=93.46 E-value=0.28 Score=50.66 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=50.1
Q ss_pred HHHHhcCcEEEEeccCeecCCC--ChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCC
Q 010331 240 ERLEEKGIVQAINVETTICPTG--TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 317 (513)
Q Consensus 240 ~~l~~~~~vtli~~~~~ll~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (513)
..+.+.+..+.++...++.|.- ...+.+.+++.+++.||+++++++|.++..+++ +
T Consensus 84 ~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~----------------------~ 141 (409)
T PF03486_consen 84 AFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED----------------------G 141 (409)
T ss_dssp HHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT----------------------E
T ss_pred HHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC----------------------c
Confidence 4555556556666666776654 355567778888999999999999999977542 2
Q ss_pred ceEEEecccccCCcceEEeeceEEEecCCCCC
Q 010331 318 KYILELQPAIKGLESQIFEADLVLWTVGSKPL 349 (513)
Q Consensus 318 ~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~ 349 (513)
.+.++++ ++.++.||.||+|+|-...
T Consensus 142 ~f~v~~~------~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 142 VFGVKTK------NGGEYEADAVILATGGKSY 167 (409)
T ss_dssp EEEEEET------TTEEEEESEEEE----SSS
T ss_pred eeEeecc------CcccccCCEEEEecCCCCc
Confidence 2455542 6779999999999998753
No 389
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=93.29 E-value=0.11 Score=52.10 Aligned_cols=38 Identities=37% Similarity=0.397 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~ 117 (513)
.+++|||||||+.|++.|..|...- .-...+|+|+|..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp--~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNP--PFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCC--ccchheeeEEecc
Confidence 3689999999999999999998532 1355789999987
No 390
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.25 E-value=0.1 Score=50.44 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||.|-.|..+|..|++.|. -+++|||...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GV-----g~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGI-----GAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCE
Confidence 4689999999999999999999653 3899999865
No 391
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.18 E-value=0.56 Score=47.27 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=27.6
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..|.|||||.++..+-+.|..... ....++.-|-++.
T Consensus 188 ~~V~ViG~GQSAAEi~~~Ll~~~~--~~~~~l~witR~~ 224 (436)
T COG3486 188 RSVTVIGSGQSAAEIFLDLLNSQP--PQDYQLNWITRSS 224 (436)
T ss_pred ceEEEEcCCccHHHHHHHHHhCCC--CcCccceeeeccC
Confidence 459999999999999988876433 2334577787766
No 392
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=0.054 Score=52.82 Aligned_cols=99 Identities=20% Similarity=0.249 Sum_probs=64.2
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE--
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD-- 157 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-- 157 (513)
-+-+|||+|+.+|.||-.|+-.+ ++||+.=|+- ++.|. ..+..+...+.+..+|+.|...
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg------~~vtVmVRSI----------~LrGF--Dqdmae~v~~~m~~~Gikf~~~~v 260 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFG------YDVTVMVRSI----------LLRGF--DQDMAELVAEHMEERGIKFLRKTV 260 (503)
T ss_pred CceEEEccceeeeehhhhHhhcC------CCcEEEEEEe----------ecccc--cHHHHHHHHHHHHHhCCceeeccc
Confidence 47899999999999999998754 4888876643 22221 1255667778888899999876
Q ss_pred --eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCC
Q 010331 158 --RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204 (513)
Q Consensus 158 --~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~ 204 (513)
+|+.++... ..+.-....+..+.+-.||.++.|.|-.+.
T Consensus 261 p~~Veq~~~g~--------l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~ 301 (503)
T KOG4716|consen 261 PERVEQIDDGK--------LRVFYKNTNTGEEGEEEYDTVLWAIGRKAL 301 (503)
T ss_pred ceeeeeccCCc--------EEEEeecccccccccchhhhhhhhhccccc
Confidence 455554322 111000111222235679999999997764
No 393
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.88 E-value=0.44 Score=47.25 Aligned_cols=34 Identities=29% Similarity=0.210 Sum_probs=29.4
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||+|.-|...|.+|.+. +.+|+++++.+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA------GLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC------CCCeEEEEech
Confidence 35899999999999999999984 55999999864
No 394
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.65 E-value=0.2 Score=46.39 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=29.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~ 117 (513)
.++|+|||||-.|...|..|.+ .+.+|+||++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~------~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLK------YGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHH------CCCeEEEEcCC
Confidence 5799999999999999999988 45699999874
No 395
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.62 E-value=0.17 Score=44.83 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=28.7
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+|.|||||..|.++|..|++. +.+|+|..+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccH
Confidence 699999999999999999994 45999999866
No 396
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=92.57 E-value=0.53 Score=45.31 Aligned_cols=136 Identities=10% Similarity=0.038 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccc-cC--CcceEEeece
Q 010331 263 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI-KG--LESQIFEADL 339 (513)
Q Consensus 263 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~-~~--~~g~~i~aD~ 339 (513)
..+.+.+.+...+.|++++.++.+.++..+++.. .+ .++.+...... .+ .+...+.+++
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~------~V------------~GVv~~~~~v~~~g~~~d~~~i~Ak~ 161 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTV------GV------------AGVVINWSAIELAGLHVDPLTQRSRV 161 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCC------ce------------EEEEeCCccccccCCCCCCEEEEcCE
Confidence 3445556667778899999999999887644200 00 12222111000 01 1356899999
Q ss_pred EEEecCCCCC-CCCCCCCCCccCCCcc-------------CCCCCeEeCCCccccCCCCEEEEcccccccCCCCCCCCCc
Q 010331 340 VLWTVGSKPL-LPHVEPPNNRLHDLPL-------------NARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 405 (513)
Q Consensus 340 vi~a~G~~p~-~~~l~~~~~~~~~~~~-------------~~~G~i~Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~ 405 (513)
||.|+|.... ..++..-. ++.. +..-...|+.+-++ +|++|++|=+++-.+ |.|...-
T Consensus 162 VVdATG~~a~v~~~l~~~~----~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~--~~g~~~~gm~~~~~~--~~~rmgp 233 (254)
T TIGR00292 162 VVDATGHDAEIVAVCAKKI----VLEDQVPKLGGEKSMWAEVAEVAIHENTREV--VPNLYVAGMAVAAVH--GLPRMGP 233 (254)
T ss_pred EEEeecCCchHHHHHHHHc----CcccCCcccCCchhhhhhhhHHHHHhccCcc--cCCEEEechhhhhhc--CCCCcCc
Confidence 9999997643 22221100 0100 10111223333333 899999998876433 3333333
Q ss_pred hHHHH-HHHHHHHHHHHHHH
Q 010331 406 AQVAF-QQADFAGWNLWAAI 424 (513)
Q Consensus 406 a~~A~-~qg~~~a~ni~~~l 424 (513)
...+| -.|+.+|+-|...+
T Consensus 234 ~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 234 IFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred hHHHHHHhhHHHHHHHHHHh
Confidence 33444 57888998887765
No 397
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=91.95 E-value=1.3 Score=45.17 Aligned_cols=80 Identities=19% Similarity=0.122 Sum_probs=57.4
Q ss_pred HHHHhcCcEEEEeccCeecCC--CChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCC
Q 010331 240 ERLEEKGIVQAINVETTICPT--GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 317 (513)
Q Consensus 240 ~~l~~~~~vtli~~~~~ll~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (513)
+.+.+.+..+..+...++.|. ....+.+.++..+++.||++++++.|.+|+. +
T Consensus 61 ~fF~~~Gi~~~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~-------------------------~ 115 (376)
T TIGR03862 61 DWARGLGIETFVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG-------------------------G 115 (376)
T ss_pred HHHHHCCCceEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC-------------------------C
Confidence 566666655666777777764 3456677788899999999999999999932 2
Q ss_pred ceEEEecccccCCcceEEeeceEEEecCCCCC
Q 010331 318 KYILELQPAIKGLESQIFEADLVLWTVGSKPL 349 (513)
Q Consensus 318 ~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~ 349 (513)
+..+.+. .++..+.||.||+|+|-.+.
T Consensus 116 ~~~v~~~-----~~~~~~~a~~vIlAtGG~s~ 142 (376)
T TIGR03862 116 TLRFETP-----DGQSTIEADAVVLALGGASW 142 (376)
T ss_pred cEEEEEC-----CCceEEecCEEEEcCCCccc
Confidence 2334432 13346999999999998753
No 398
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.85 E-value=0.22 Score=45.28 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=27.1
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+|.|||+|.-|...|..+++ .+++|+|+|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~------~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR------AGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH------TTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHh------CCCcEEEEECCh
Confidence 58999999999999999998 456999999977
No 399
>PRK06847 hypothetical protein; Provisional
Probab=91.54 E-value=0.6 Score=47.57 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEE
Q 010331 263 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 342 (513)
Q Consensus 263 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~ 342 (513)
..+.+.+.+.+.+.|++++.++++.+++.++ +.+.+.+. +|+++.+|.||.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-----------------------~~~~v~~~------~g~~~~ad~vI~ 157 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDD-----------------------DGVTVTFS------DGTTGRYDLVVG 157 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC-----------------------CEEEEEEc------CCCEEEcCEEEE
Confidence 3455666677778899999999999987644 34445443 677899999999
Q ss_pred ecCCCCCC
Q 010331 343 TVGSKPLL 350 (513)
Q Consensus 343 a~G~~p~~ 350 (513)
|.|..+..
T Consensus 158 AdG~~s~~ 165 (375)
T PRK06847 158 ADGLYSKV 165 (375)
T ss_pred CcCCCcch
Confidence 99988653
No 400
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.44 E-value=0.48 Score=47.69 Aligned_cols=33 Identities=36% Similarity=0.531 Sum_probs=29.5
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.||.|||.||.||..|.-|++.|+ +|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH------eVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH------EVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC------eEEEEeCCH
Confidence 379999999999999999999765 999999765
No 401
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.43 E-value=0.24 Score=52.25 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=29.2
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
+|+|||.|.+|+++|+.|.+. +++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCc
Confidence 699999999999999999984 559999998763
No 402
>PRK04148 hypothetical protein; Provisional
Probab=91.41 E-value=0.34 Score=41.41 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=28.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
..+|++||.| .|.+.|..|.+. +++|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~------G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES------GFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC------CCEEEEEECCHH
Confidence 3689999999 888889999984 459999998773
No 403
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.86 E-value=0.28 Score=51.02 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCccc
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~ 122 (513)
...||+|||||..|-.||...+- .|+++-|+|++++-..
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~T------RGLktaLVE~~DF~SG 104 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAAT------RGLKTALVEAGDFASG 104 (680)
T ss_pred CcccEEEECCCccCcceeehhhc------ccceeEEEecccccCC
Confidence 35899999999999999988876 5679999999995543
No 404
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=90.70 E-value=0.8 Score=46.62 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=39.1
Q ss_pred eCCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010331 373 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 424 (513)
Q Consensus 373 Vd~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l 424 (513)
+|+++++.-+||+|++|.+..+..+-| .-.-|+|...|..|+++++..+
T Consensus 327 I~~~~~Sk~~pgLYf~GEvLDvdG~~G---GYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 327 LDESLMLKARPGVFCAGEMLDWEAPTG---GYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred cChhhhcccCCCeEEEEEEEeeccCCC---CHHHHHHHHHHHHHHHHHHHhh
Confidence 455677778999999999998865433 4577899999999999988754
No 405
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.55 E-value=0.76 Score=39.42 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=30.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||+|--|..+|..|.+.|. -+++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcc
Confidence 3689999999999999999999765 2899999865
No 406
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=1.9 Score=42.58 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=56.2
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (513)
..+||.|||||-.|+.||..|+-.-. .|||+|=.+ . +..+.+.. +++..-.+++++.+
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~------hVtllEF~~------e--------LkAD~VLq--~kl~sl~Nv~ii~n 410 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVE------HVTLLEFAP------E--------LKADAVLQ--DKLRSLPNVTIITN 410 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhh------eeeeeecch------h--------hhhHHHHH--HHHhcCCCcEEEec
Confidence 35899999999999999999986543 788887433 1 11112221 12223357888865
Q ss_pred -eEEEEeCCCCcCcCCCceeeccceEecCCc--eEEEecEEEEeCCCCCCCC
Q 010331 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSLGAEPKLD 206 (513)
Q Consensus 158 -~V~~id~~~~~~~~~~~v~~~~~~v~~~~g--~~i~yD~LVlAtGs~~~~~ 206 (513)
.-+.|..+... ...+.+. .-.+| ..+.-+-+++-.|.-|+..
T Consensus 411 a~Ttei~Gdg~k---V~Gl~Y~----dr~sge~~~l~LeGvFVqIGL~PNT~ 455 (520)
T COG3634 411 AQTTEVKGDGDK---VTGLEYR----DRVSGEEHHLELEGVFVQIGLLPNTE 455 (520)
T ss_pred ceeeEEecCCce---ecceEEE----eccCCceeEEEeeeeEEEEecccChh
Confidence 44555444210 0111111 11122 3456677777777766533
No 407
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.43 E-value=0.46 Score=42.57 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=28.8
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|||+|+|.+|..||..|..+|. +++++|..+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa------~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGA------EVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-------EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCC------EEEeccCCH
Confidence 4799999999999999999999654 999999754
No 408
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.42 E-value=0.4 Score=51.91 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+.+|+|+|.|.-|...|..|.+ .+.++++||+++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~------~g~~vvvId~d~ 450 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLA------AGIPLVVIETSR 450 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHH------CCCCEEEEECCH
Confidence 35789999999999999999988 456999999876
No 409
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.01 E-value=0.38 Score=43.85 Aligned_cols=33 Identities=36% Similarity=0.433 Sum_probs=25.6
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
++|.|||.|+.|+..|..|++. |++|+-+|.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEEEEeCCh
Confidence 3799999999999999999994 55999999877
No 410
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.94 E-value=0.39 Score=45.41 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||.|-.|-.+|..|.+.|. -+++|+|...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GV-----g~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGV-----GKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCE
Confidence 4689999999999999999999654 2999999765
No 411
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=89.90 E-value=0.6 Score=47.72 Aligned_cols=54 Identities=22% Similarity=0.257 Sum_probs=43.2
Q ss_pred chHhHHHHhcCCCeEEEEE-eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCC
Q 010331 139 IAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE 202 (513)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~ 202 (513)
+...+++.++..|++|+.. +|++|..++.. + ..|.+++|.++++|+||+|.|-.
T Consensus 175 vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~------~----~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 175 VVKNIREYLESLGGEIRFNTEVEDIEIEDNE------V----LGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHHHhcCcEEEeeeEEEEEEecCCc------e----EEEEccCCcEEecCEEEEccCcc
Confidence 5567788888889999875 99999876641 1 25888899999999999999964
No 412
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=89.74 E-value=0.65 Score=39.92 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=30.2
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..++|+|||+|-+|-.++..|...+. -+|+|+.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~-----~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA-----KEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS-----SEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-----CEEEEEECCH
Confidence 35799999999999999999998543 2599999864
No 413
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=89.57 E-value=1.2 Score=45.84 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEe
Q 010331 264 GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 343 (513)
Q Consensus 264 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a 343 (513)
.+.+.+.+.+++.|++++.++.++++..++ +.+.+++. +++++.+|+||.|
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-----------------------~~v~v~~~------~g~~~~a~~vV~A 164 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDA-----------------------DRVRLRLD------DGRRLEAALAIAA 164 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecC-----------------------CeEEEEEC------CCCEEEeCEEEEe
Confidence 444556677778899999999999987654 44555543 5678999999999
Q ss_pred cCCCCC
Q 010331 344 VGSKPL 349 (513)
Q Consensus 344 ~G~~p~ 349 (513)
.|..++
T Consensus 165 dG~~S~ 170 (392)
T PRK08773 165 DGAAST 170 (392)
T ss_pred cCCCch
Confidence 999875
No 414
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.37 E-value=0.3 Score=45.27 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||.|-.|..+|..|.+.|. -+++|+|...
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv-----~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGV-----GTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEecCCE
Confidence 4789999999999999999999643 2899999864
No 415
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=89.31 E-value=1.2 Score=45.74 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEE
Q 010331 263 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 342 (513)
Q Consensus 263 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~ 342 (513)
..+.+.+.+.+.+.|++++.++++++++.++ +.+.+++. +++++.+|+||.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-----------------------~~v~v~~~------~g~~~~ad~vI~ 161 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRD-----------------------EGVTVTLS------DGSVLEARLLVA 161 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-----------------------CEEEEEEC------CCCEEEeCEEEE
Confidence 3455666677778899999999999987654 44555543 567899999999
Q ss_pred ecCCCCC
Q 010331 343 TVGSKPL 349 (513)
Q Consensus 343 a~G~~p~ 349 (513)
|.|....
T Consensus 162 AdG~~S~ 168 (403)
T PRK07333 162 ADGARSK 168 (403)
T ss_pred cCCCChH
Confidence 9998765
No 416
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.86 E-value=0.62 Score=38.57 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=26.8
Q ss_pred EEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 82 VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
|||+|.|..|...+..|.+ .+.+|++||+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~------~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE------GGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH------TTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHh------CCCEEEEEECCc
Confidence 7999999999999999998 345999999876
No 417
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=88.80 E-value=1.8 Score=44.93 Aligned_cols=96 Identities=15% Similarity=0.044 Sum_probs=60.4
Q ss_pred EEECCCHHHHHHH-HHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEE-eEE
Q 010331 83 CILGGGFGGLYTA-LRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD-RVK 160 (513)
Q Consensus 83 VIVGgG~AGl~aA-~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~V~ 160 (513)
.|++.|.-|+..+ ..+.++.. .-+.+|++++..+ |.++.. ++...+.+.+++.|++++.+ +|.
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~--~LG~~V~~vp~~p-----pslpG~--------rL~~aL~~~l~~~Gv~I~~g~~V~ 283 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEE--ALGCPVFELPTLP-----PSVPGL--------RLQNALRRAFERLGGRIMPGDEVL 283 (422)
T ss_pred EEEECceecCCChHHHHHHHHH--HHCCCEEEeCCCC-----CCCchH--------HHHHHHHHHHHhCCCEEEeCCEEE
Confidence 6688889998887 44432100 1345999998766 222211 35556667777789998876 888
Q ss_pred EEeCCCCcCcCCCceeeccceEecCCc--eEEEecEEEEeCCCCC
Q 010331 161 LLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSLGAEP 203 (513)
Q Consensus 161 ~id~~~~~~~~~~~v~~~~~~v~~~~g--~~i~yD~LVlAtGs~~ 203 (513)
+++.++. .+. .+...++ ..+++|.+|+|+|...
T Consensus 284 ~v~~~~~------~V~----~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 284 GAEFEGG------RVT----AVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred EEEEeCC------EEE----EEEeeCCceEEEECCEEEEeCCCcc
Confidence 8865432 111 1223333 4689999999999753
No 418
>PRK06834 hypothetical protein; Provisional
Probab=88.71 E-value=1.5 Score=46.62 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEe
Q 010331 264 GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 343 (513)
Q Consensus 264 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a 343 (513)
.+.+.+.+.+++.||+++.++++++++.++ +++.+++. +++++.+|+||.|
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~-----------------------~~v~v~~~------~g~~i~a~~vVgA 151 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDD-----------------------TGVDVELS------DGRTLRAQYLVGC 151 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-----------------------CeEEEEEC------CCCEEEeCEEEEe
Confidence 344555677788899999999999998754 45555543 4568999999999
Q ss_pred cCCCCC
Q 010331 344 VGSKPL 349 (513)
Q Consensus 344 ~G~~p~ 349 (513)
.|..+.
T Consensus 152 DG~~S~ 157 (488)
T PRK06834 152 DGGRSL 157 (488)
T ss_pred cCCCCC
Confidence 999875
No 419
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.03 E-value=0.71 Score=48.47 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=0.0
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEEeE
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRV 159 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~V 159 (513)
.+|+|+|+|.-|..+|..|.+ .+.+|++||+++ .....+.+..+++++.+..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~------~g~~v~vid~~~----------------------~~~~~~~~~~~~~~~~gd~ 52 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSG------ENNDVTVIDTDE----------------------ERLRRLQDRLDVRTVVGNG 52 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHh------CCCcEEEEECCH----------------------HHHHHHHhhcCEEEEEeCC
Q ss_pred EEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCC
Q 010331 160 KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201 (513)
Q Consensus 160 ~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs 201 (513)
..- -.+.+-..-.+|.+|++++.
T Consensus 53 ~~~-------------------~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 53 SSP-------------------DVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred CCH-------------------HHHHHcCCCcCCEEEEecCC
No 420
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.00 E-value=0.45 Score=46.15 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=29.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+-+|+|||||.+|..+|+.+.-+ +.+|+++|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhcc------CCeeEEEecCH
Confidence 46899999999999999988774 45999999874
No 421
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=87.93 E-value=1 Score=40.32 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=28.7
Q ss_pred CCCeEEEECCCH-HHHHHHHHhhhccccCCCCCeEEEEeCC
Q 010331 78 KKPRICILGGGF-GGLYTALRLESLVWQDDKKPQVLLVDQS 117 (513)
Q Consensus 78 ~~~~VVIVGgG~-AGl~aA~~L~~~~~~~~~~~~V~lIe~~ 117 (513)
..++|+|||+|- .|..+|..|.+. +.+|+++++.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECC
Confidence 458999999995 799999999883 4589999975
No 422
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.89 E-value=1.2 Score=41.26 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=29.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~ 117 (513)
..+|+|||+|--|..+|..|++.|. -+++|+|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gv-----g~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGI-----GKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEECCC
Confidence 4789999999999999999999543 179999987
No 423
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.20 E-value=0.78 Score=45.56 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=29.5
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+|.|||+|.-|.+.|..|++. +++|+++|+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCH
Confidence 4799999999999999999984 55999999876
No 424
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=87.11 E-value=0.76 Score=39.57 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=26.5
Q ss_pred EEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 82 VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
++|+|+|+-+.+.+..+..+++ +|+++|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~------~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGF------RVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTE------EEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCC------EEEEEcCCcc
Confidence 6899999999999999998655 9999999863
No 425
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.02 E-value=0.81 Score=48.45 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=29.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|+|+|++|+.++..++.+| .+|+++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG------A~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG------AIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC------CEEEEEeCCH
Confidence 579999999999999999998753 4899999866
No 426
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.98 E-value=0.94 Score=46.05 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+++|+|||+|..|-.+|..|++. .+.+|++.|++.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~-----~d~~V~iAdRs~ 35 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN-----GDGEVTIADRSK 35 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC-----CCceEEEEeCCH
Confidence 36899999999999999999984 337999999975
No 427
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.96 E-value=0.86 Score=46.50 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=29.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||+|.+|+.+|..|.++ +.+|+++|+++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL------GATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCH
Confidence 46799999999999999999985 44899999865
No 428
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.95 E-value=1 Score=44.22 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=29.9
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+|.|||+|.-|...|..+++ .+++|+++|.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~------~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR------AGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh------CCCEEEEEECCH
Confidence 589999999999999999998 456999999877
No 429
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.94 E-value=0.79 Score=50.02 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+.+|+|+|.|.-|-..|+.|.+ .+.++++||.++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~------~g~~vvvID~d~ 433 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMA------NKMRITVLERDI 433 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHh------CCCCEEEEECCH
Confidence 4689999999999999999987 456999999876
No 430
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=86.91 E-value=1 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=18.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhh
Q 010331 79 KPRICILGGGFGGLYTALRLES 100 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~ 100 (513)
.++|||||||..|+-+|....+
T Consensus 550 Gk~VVVIGGGnTAmD~ArtAlr 571 (1028)
T PRK06567 550 RMPIAVIGGGLTSLDAATESLY 571 (1028)
T ss_pred CCCEEEEcCcHHHHHHHHHHHh
Confidence 4689999999999999985543
No 431
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=86.90 E-value=1.1 Score=45.65 Aligned_cols=46 Identities=24% Similarity=0.193 Sum_probs=37.1
Q ss_pred CCCccccCCCCEEEEcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHCCCC
Q 010331 374 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 428 (513)
Q Consensus 374 d~~l~~~~~p~VfaiGD~a~~~~~~g~~~~~~a~~A~~qg~~~a~ni~~~l~~~~ 428 (513)
+.+|++...||+|++|+.+.. .-...|..||-+++.|+...+.+++
T Consensus 347 ~~~l~~k~~~~lf~AGqi~G~---------~Gy~eaaa~G~~ag~na~~~~~g~e 392 (392)
T PF01134_consen 347 LNTLETKKIPGLFFAGQINGT---------EGYEEAAAQGLIAGINAARRLQGKE 392 (392)
T ss_dssp BTTSBBSSSBTEEE-GGGGTB----------SHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred ccceEECCCCCceECCCCcch---------hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 347888889999999999986 2356788999999999999988763
No 432
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.84 E-value=0.91 Score=44.56 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=29.5
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
++|.|||+|.-|...|..|++ .+++|+++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~------~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF------HGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh------cCCeEEEEeCCH
Confidence 589999999999999999998 455999999876
No 433
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=86.82 E-value=0.97 Score=41.71 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||.|--|..+|..|.+.|- -+++|+|...
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV-----g~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI-----DSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECCc
Confidence 4689999999999999999999655 2799999765
No 434
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=86.68 E-value=0.96 Score=42.85 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=29.0
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+|+|||+|--|...++.|.+.|. -+++|+|...
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-----g~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-----GQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCE
Confidence 58999999999999999999765 2899999865
No 435
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=86.67 E-value=1.2 Score=38.92 Aligned_cols=31 Identities=39% Similarity=0.435 Sum_probs=27.4
Q ss_pred EEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 82 VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
|+|+|+|--|...|..|.+ .+.+|+++.+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~------~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ------AGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH------TTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHH------CCCceEEEEccc
Confidence 7899999999999999998 456999998854
No 436
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.63 E-value=0.84 Score=44.82 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=29.5
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
++|.|||+|.-|...|..|++ .+++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~------~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAV------SGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHh------CCCcEEEEeCCH
Confidence 579999999999999999998 455999999876
No 437
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=86.58 E-value=5 Score=41.44 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEE
Q 010331 262 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 341 (513)
Q Consensus 262 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi 341 (513)
...+.+.+.+.+++.|+++++++.+.++...+ +.+.+++ ++.++.+|.||
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-----------------------~~~~v~~-------~~~~i~ad~VI 153 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDD-----------------------NGFGVET-------SGGEYEADKVI 153 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-----------------------CeEEEEE-------CCcEEEcCEEE
Confidence 35566777788889999999999999986643 3334442 34579999999
Q ss_pred EecCCCC
Q 010331 342 WTVGSKP 348 (513)
Q Consensus 342 ~a~G~~p 348 (513)
+|+|...
T Consensus 154 lAtG~~s 160 (400)
T TIGR00275 154 LATGGLS 160 (400)
T ss_pred ECCCCcc
Confidence 9999754
No 438
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.56 E-value=1.5 Score=41.51 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=30.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||.|--|..+|..|.+.|. -+++|+|...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gv-----g~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGV-----GKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCE
Confidence 4689999999999999999999765 2899998764
No 439
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=86.19 E-value=1.5 Score=41.87 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||.|-.|..+|..|++.|. -+++|+|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gv-----g~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGV-----GNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCc
Confidence 4689999999999999999999765 2899999865
No 440
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.16 E-value=0.88 Score=49.82 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|+|.|.-|-..|+.|.+ .+.++++||+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~------~g~~vvvID~d~ 433 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS------SGVKMTVLDHDP 433 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh------CCCCEEEEECCH
Confidence 4789999999999999999988 556999999877
No 441
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=86.05 E-value=0.55 Score=47.03 Aligned_cols=53 Identities=23% Similarity=0.194 Sum_probs=38.1
Q ss_pred cchHhHHHHhcCCCeEEEEE-eEEEEeCCCCcCcCCCceeeccce-EecCCceEEEecEEEEeCCCC
Q 010331 138 EIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYDWLVLSLGAE 202 (513)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~-v~~~~g~~i~yD~LVlAtGs~ 202 (513)
.+...+.+.+++.|++++.+ +|++|+.+... .. |.+++|+ +.+|++|+|+|..
T Consensus 148 ~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-----------v~gv~~~~g~-i~ad~vV~a~G~~ 202 (358)
T PF01266_consen 148 RLIQALAAEAQRAGVEIRTGTEVTSIDVDGGR-----------VTGVRTSDGE-IRADRVVLAAGAW 202 (358)
T ss_dssp HHHHHHHHHHHHTT-EEEESEEEEEEEEETTE-----------EEEEEETTEE-EEECEEEE--GGG
T ss_pred chhhhhHHHHHHhhhhccccccccchhhcccc-----------cccccccccc-cccceeEeccccc
Confidence 34555666667789999998 99999876541 13 7888996 9999999999975
No 442
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=86.01 E-value=1.3 Score=42.34 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
..++++|+|+|+-+...|..+..++ ++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lG------f~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLP------CRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCC------CEEEEEeCCcc
Confidence 4579999999999999999998855 59999998874
No 443
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=85.90 E-value=1.2 Score=44.05 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=29.2
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+|+|||+|--|..+|+.|+..|. -+++|+|...
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-----g~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-----GEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-----CeEEEEcCCC
Confidence 59999999999999999999765 2899999865
No 444
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.85 E-value=1.4 Score=43.79 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.++|.|||+|.-|...|..++. .+++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~------aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA------HGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh------CCCeEEEEeCCH
Confidence 3689999999999999999998 456999999876
No 445
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.72 E-value=1.9 Score=37.23 Aligned_cols=33 Identities=27% Similarity=0.255 Sum_probs=28.7
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+|+|||.|--|..+|..|.+.|. -+++|+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCCC
Confidence 58999999999999999999654 2899999865
No 446
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=85.57 E-value=2.7 Score=43.32 Aligned_cols=55 Identities=25% Similarity=0.419 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecC
Q 010331 266 REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 345 (513)
Q Consensus 266 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G 345 (513)
.+.+.+.+.+.|++++.++++.+++.++ +.+.+.+. +|+++.+|+||.|.|
T Consensus 115 ~~~L~~~~~~~gv~v~~~~~v~~i~~~~-----------------------~~v~v~~~------~g~~~~a~~vVgAdG 165 (405)
T PRK05714 115 QDALLERLHDSDIGLLANARLEQMRRSG-----------------------DDWLLTLA------DGRQLRAPLVVAADG 165 (405)
T ss_pred HHHHHHHHhcCCCEEEcCCEEEEEEEcC-----------------------CeEEEEEC------CCCEEEeCEEEEecC
Confidence 3445566677899999999999987654 44555543 667899999999999
Q ss_pred CCCC
Q 010331 346 SKPL 349 (513)
Q Consensus 346 ~~p~ 349 (513)
....
T Consensus 166 ~~S~ 169 (405)
T PRK05714 166 ANSA 169 (405)
T ss_pred CCch
Confidence 8764
No 447
>PRK00536 speE spermidine synthase; Provisional
Probab=85.30 E-value=1.1 Score=43.14 Aligned_cols=34 Identities=26% Similarity=0.187 Sum_probs=27.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 77 ~~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+..++|+|||||=+|. |+++.|+ +. +|+++|=.+
T Consensus 71 ~~pk~VLIiGGGDGg~--~REvLkh-----~~-~v~mVeID~ 104 (262)
T PRK00536 71 KELKEVLIVDGFDLEL--AHQLFKY-----DT-HVDFVQADE 104 (262)
T ss_pred CCCCeEEEEcCCchHH--HHHHHCc-----CC-eeEEEECCH
Confidence 4468999999999986 8888885 33 999998765
No 448
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.19 E-value=1.3 Score=43.66 Aligned_cols=33 Identities=27% Similarity=0.219 Sum_probs=29.7
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
++|.|||+|.-|...|..|++ .+++|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~------~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL------AGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH------CCCeEEEEeCCH
Confidence 689999999999999999998 456999999876
No 449
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.11 E-value=1.3 Score=43.97 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=28.6
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+|.|||+|..|.++|..|...+ ...+++|+|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g----~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRG----LASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcC----CCCEEEEEECCc
Confidence 7999999999999999998843 124899999865
No 450
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.07 E-value=1.2 Score=43.84 Aligned_cols=33 Identities=30% Similarity=0.301 Sum_probs=29.6
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
++|.|||+|.-|...|..|++ .+++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~------~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR------TGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh------cCCeEEEEeCCH
Confidence 589999999999999999998 455999999876
No 451
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=85.04 E-value=3.2 Score=40.25 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEE
Q 010331 263 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 342 (513)
Q Consensus 263 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~ 342 (513)
..+.+.+.+.+++.|++++.++++.++..++ +.+.+.+. +++.++.+|+||.
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~-----------------------~~~~~~~~-----~~~~~~~a~~vv~ 142 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIHD-----------------------DRVVVIVR-----GGEGTVTAKIVIG 142 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC-----------------------CEEEEEEc-----CccEEEEeCEEEE
Confidence 3455666777788999999999999886644 33444332 1456899999999
Q ss_pred ecCCCC
Q 010331 343 TVGSKP 348 (513)
Q Consensus 343 a~G~~p 348 (513)
|+|...
T Consensus 143 a~G~~s 148 (295)
T TIGR02032 143 ADGSRS 148 (295)
T ss_pred CCCcch
Confidence 999864
No 452
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=84.81 E-value=1.5 Score=45.16 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=30.1
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..++|+|+|.|+-|+.+|..++.. +.+|+++|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCh
Confidence 357999999999999999999874 55999998865
No 453
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.79 E-value=1.7 Score=41.62 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||.|--|..+|..|++.|. -+++|+|...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gv-----g~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGV-----GTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCE
Confidence 4799999999999999999999654 2899998754
No 454
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=84.77 E-value=1.4 Score=41.54 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=30.0
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.++|+|+|+|-+|..+|..|.+.|. ..-+|+|+|++.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~---~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGA---KPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCc---CcceEEEEeCCC
Confidence 4689999999999999999988543 112699999974
No 455
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=84.61 E-value=2.8 Score=43.08 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=43.5
Q ss_pred ChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEE
Q 010331 262 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 341 (513)
Q Consensus 262 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi 341 (513)
+..+.+.+.+.+++.|++++.++.+.++...+ +.+.+++. ++ ++.+|.||
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-----------------------~~~~V~~~------~g-~i~ad~vV 197 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHA-----------------------NGVVVRTT------QG-EYEARTLI 197 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-----------------------CeEEEEEC------CC-EEEeCEEE
Confidence 35666677788889999999999999887643 33444432 33 69999999
Q ss_pred EecCCCCC
Q 010331 342 WTVGSKPL 349 (513)
Q Consensus 342 ~a~G~~p~ 349 (513)
.|+|....
T Consensus 198 ~A~G~~s~ 205 (393)
T PRK11728 198 NCAGLMSD 205 (393)
T ss_pred ECCCcchH
Confidence 99998764
No 456
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=84.50 E-value=1.7 Score=44.40 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEE
Q 010331 262 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 341 (513)
Q Consensus 262 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi 341 (513)
+..+...+.+.+.+ |++++.++.|.+++.++ +.+.+++. +|..+.||.||
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~-----------------------~~~~v~t~------~g~~~~a~~vV 183 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDG-----------------------EGWQLLDA------NGEVIAASVVV 183 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC-----------------------CeEEEEeC------CCCEEEcCEEE
Confidence 45555666677777 99999999999987643 34445432 56678999999
Q ss_pred EecCCCCC
Q 010331 342 WTVGSKPL 349 (513)
Q Consensus 342 ~a~G~~p~ 349 (513)
+|+|....
T Consensus 184 ~a~G~~~~ 191 (381)
T TIGR03197 184 LANGAQAG 191 (381)
T ss_pred EcCCcccc
Confidence 99997654
No 457
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=84.45 E-value=1.4 Score=44.75 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=32.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|||.|+|.||+.+|..|...+. ..-+|+++|+..
T Consensus 199 d~kiv~~GAGAAgiaia~~l~~~g~---~~~~i~~~D~~G 235 (432)
T COG0281 199 DQKIVINGAGAAGIAIADLLVAAGV---KEENIFVVDRKG 235 (432)
T ss_pred ceEEEEeCCcHHHHHHHHHHHHhCC---CcccEEEEecCC
Confidence 4699999999999999999999876 445899999875
No 458
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=84.44 E-value=1.6 Score=45.11 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
+++|+|||||++|+++|..|++. +++|+|||+++.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~------Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR------GVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC------CCcEEEEEccCc
Confidence 46899999999999999999994 569999997653
No 459
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=84.40 E-value=2.4 Score=39.59 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||.|-.|..+|..|.+.|. -+++|+|...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGV-----GNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCE
Confidence 4689999999999999999999654 2799999864
No 460
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=84.34 E-value=2.1 Score=42.69 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=29.8
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
...+|.|||+|..|.++|..|...+. --++.|+|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~----~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGI----ADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC----CCEEEEEeCCC
Confidence 35699999999999999999987422 12799999855
No 461
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=84.06 E-value=1.6 Score=44.65 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=45.2
Q ss_pred hccccCCcchHhHHHHhcCCCeEEEEE-eEEEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCC
Q 010331 131 SGEVDAWEIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203 (513)
Q Consensus 131 ~g~~~~~~~~~~~~~~~~~~~v~~~~~-~V~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~ 203 (513)
.|.+++..+...+.+.+.+ |++++.+ .|++|+.+... ..|.+.+|..+.+|.||+|+|...
T Consensus 129 ~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~-----------~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 129 GGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEG-----------WQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred CcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCe-----------EEEEeCCCCEEEcCEEEEcCCccc
Confidence 3456667777777777777 9999875 88888754321 246677786689999999999754
No 462
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.05 E-value=1.3 Score=43.29 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=29.5
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
++|.|||+|.-|...|..|++ .+++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~------~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAV------AGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHH------CCCceEEEeCCH
Confidence 579999999999999999998 455999999876
No 463
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=84.00 E-value=3.6 Score=41.94 Aligned_cols=56 Identities=23% Similarity=0.194 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHh-CCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEE
Q 010331 264 GNREAALKVLSA-RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 342 (513)
Q Consensus 264 ~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~ 342 (513)
.+.+.+.+.+.+ .|++++.+++++++..++ +++.+.+. +++++.||+||.
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~-----------------------~~~~v~~~------~g~~~~ad~vV~ 156 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQ-----------------------DYVRVTLD------NGQQLRAKLLIA 156 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC-----------------------CeEEEEEC------CCCEEEeeEEEE
Confidence 344555666666 499999999999997654 44555543 566899999999
Q ss_pred ecCCCC
Q 010331 343 TVGSKP 348 (513)
Q Consensus 343 a~G~~p 348 (513)
|.|...
T Consensus 157 AdG~~S 162 (382)
T TIGR01984 157 ADGANS 162 (382)
T ss_pred ecCCCh
Confidence 999774
No 464
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=83.97 E-value=1.5 Score=44.12 Aligned_cols=33 Identities=36% Similarity=0.616 Sum_probs=28.9
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~ 117 (513)
+.+|.|||+|.-|...|..|.+. +++|++++++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecH
Confidence 35899999999999999999984 4599999974
No 465
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=83.82 E-value=3.8 Score=41.73 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhCC-cEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEE
Q 010331 264 GNREAALKVLSARK-VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 342 (513)
Q Consensus 264 ~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~ 342 (513)
.+.+.+.+.+.+.+ ++++.++.++++...+ +.+.++++ +|+.+.+|+||.
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-----------------------~~~~v~~~------~g~~~~~~~vi~ 157 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS-----------------------DHVELTLD------DGQQLRARLLVG 157 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC-----------------------CeeEEEEC------CCCEEEeeEEEE
Confidence 34555666677777 9999999999997644 44555543 667899999999
Q ss_pred ecCCCCC
Q 010331 343 TVGSKPL 349 (513)
Q Consensus 343 a~G~~p~ 349 (513)
|.|....
T Consensus 158 adG~~S~ 164 (385)
T TIGR01988 158 ADGANSK 164 (385)
T ss_pred eCCCCCH
Confidence 9998654
No 466
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=83.72 E-value=1.6 Score=42.97 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=30.7
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..++|+|||.|.+|..++..|++. +.+|+++++++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL------GANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 357999999999999999999985 45999999975
No 467
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=83.68 E-value=1.5 Score=47.96 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=29.0
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
||||||||.|||.||..+++... ..+.+|+||||..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~--e~G~~VilieK~~ 36 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGD--KKGLKIVLVEKAN 36 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhh--hCCCeEEEEEccC
Confidence 69999999999999999972100 1567999999965
No 468
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=83.62 E-value=2.5 Score=38.95 Aligned_cols=35 Identities=20% Similarity=0.090 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||.|--|..+|+.|.+.|- -+++|+|...
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GV-----g~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGI-----GSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCC-----CEEEEEECCc
Confidence 4689999999999999999999654 2799999865
No 469
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=83.51 E-value=2.3 Score=42.46 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=29.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||+|..|.++|..++..+. .+++|+|.++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl-----~~i~LvDi~~ 40 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNL-----GDVVLFDIVK 40 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEeCCC
Confidence 3689999999999999999887321 3799999877
No 470
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=83.47 E-value=1.6 Score=42.91 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=28.2
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+|.|||+|.-|...|..|.+. +.+|+++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA------GHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC------CCeEEEEECCh
Confidence 699999999999999999984 45999999854
No 471
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=83.37 E-value=1.9 Score=42.26 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=30.0
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..++|+|||+|-+|-++|..|.+.+. -+|+|++++.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~-----~~I~I~nR~~ 161 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGV-----ERLTIFDVDP 161 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEECCCH
Confidence 34789999999999999999998542 2799999864
No 472
>PRK09126 hypothetical protein; Provisional
Probab=83.25 E-value=3.5 Score=42.25 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=37.0
Q ss_pred HhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEecCCCCCC
Q 010331 274 SARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 350 (513)
Q Consensus 274 ~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~G~~p~~ 350 (513)
++.|++++.++++++++.++ +.+.+++. +|+++.+|+||.|.|.....
T Consensus 122 ~~~g~~i~~~~~v~~~~~~~-----------------------~~~~v~~~------~g~~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 122 QQDGIELLTGTRVTAVRTDD-----------------------DGAQVTLA------NGRRLTARLLVAADSRFSAT 169 (392)
T ss_pred hCCCcEEEcCCeEEEEEEcC-----------------------CeEEEEEc------CCCEEEeCEEEEeCCCCchh
Confidence 45799999999999987644 34445543 66789999999999987653
No 473
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=83.15 E-value=2.6 Score=43.40 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=29.7
Q ss_pred CCCeEEEECC-CHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGG-GFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGg-G~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
...+|+|+|| |+-|..++..|.+ .+++|+++.++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~------~G~~V~~l~R~~ 94 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVR------RGYNVVAVAREK 94 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH------CCCEEEEEEech
Confidence 3568999998 9999999999988 456999998764
No 474
>PRK07190 hypothetical protein; Provisional
Probab=83.14 E-value=4 Score=43.38 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEec
Q 010331 265 NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 344 (513)
Q Consensus 265 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~ 344 (513)
+.+.+.+.+++.|++++.+++++++..++ +++.+.+. +++++.|++||.|.
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~-----------------------~~v~v~~~------~g~~v~a~~vVgAD 161 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQ-----------------------AGCLTTLS------NGERIQSRYVIGAD 161 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcC-----------------------CeeEEEEC------CCcEEEeCEEEECC
Confidence 33445566778899999999999998754 34444432 45689999999999
Q ss_pred CCCC
Q 010331 345 GSKP 348 (513)
Q Consensus 345 G~~p 348 (513)
|...
T Consensus 162 G~~S 165 (487)
T PRK07190 162 GSRS 165 (487)
T ss_pred CCCH
Confidence 9865
No 475
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=83.10 E-value=3.7 Score=40.86 Aligned_cols=58 Identities=21% Similarity=0.128 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCce-EEEecccccCCcceEEeeceE
Q 010331 262 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY-ILELQPAIKGLESQIFEADLV 340 (513)
Q Consensus 262 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~~~~~~~~g~~i~aD~v 340 (513)
+..+...+.+.+.+.|++++.++.|.++...+ +.+ .+++. ++ ++.||.|
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-----------------------~~~~~v~~~------~g-~~~a~~v 185 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRG-----------------------EKVTAIVTP------SG-DVQADQV 185 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeC-----------------------CEEEEEEcC------CC-EEECCEE
Confidence 56666777788899999999999999998644 322 23321 34 7999999
Q ss_pred EEecCCCCC
Q 010331 341 LWTVGSKPL 349 (513)
Q Consensus 341 i~a~G~~p~ 349 (513)
|+|+|....
T Consensus 186 V~a~G~~~~ 194 (337)
T TIGR02352 186 VLAAGAWAG 194 (337)
T ss_pred EEcCChhhh
Confidence 999997644
No 476
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=83.08 E-value=1.5 Score=45.62 Aligned_cols=33 Identities=36% Similarity=0.460 Sum_probs=29.7
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
++|.|||.|+.|+..|..|++. +++|+.+|.++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR------QKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC------CCEEEEEeCCH
Confidence 6899999999999999999984 45999999876
No 477
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.08 E-value=1.8 Score=43.47 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||+|-.|..+|..|.+.|. -+++|||...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCc
Confidence 4689999999999999999999543 2899999865
No 478
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.07 E-value=2.6 Score=37.94 Aligned_cols=33 Identities=27% Similarity=0.183 Sum_probs=28.4
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+|+|||.|--|-.+|..|.+.|. -+++|+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-----GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCE
Confidence 58999999999999999999654 2699999865
No 479
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=82.93 E-value=2.2 Score=42.42 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=29.5
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|.|||+|--|...|..|++ .+.+|+++.+++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~------~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLAR------AGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHH------CCCeEEEEEeCC
Confidence 3589999999999999999998 456999998854
No 480
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=82.90 E-value=1.8 Score=45.64 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=30.4
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+|.|||.|+.|+..|..|++.| .+++|+.+|.++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g----~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKC----PDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC----CCCeEEEEECCH
Confidence 47999999999999999999853 357999999876
No 481
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=82.87 E-value=2.1 Score=42.46 Aligned_cols=34 Identities=35% Similarity=0.587 Sum_probs=28.4
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+|.|||+|.-|...|..|+..+. . +|+++|..+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~----~-~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKEL----A-DLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCC----C-eEEEEeCCC
Confidence 489999999999999999987432 2 899999844
No 482
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=82.79 E-value=3.7 Score=41.80 Aligned_cols=58 Identities=14% Similarity=0.031 Sum_probs=42.1
Q ss_pred ChhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEE
Q 010331 262 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 341 (513)
Q Consensus 262 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi 341 (513)
+..+.+.+.+.+++.|++++.++.|.++..++ +.+.+.+ ++.++.+|.||
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-----------------------~~~~v~~-------~~~~i~a~~vV 193 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTE-----------------------LLVTVKT-------TKGSYQANKLV 193 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecC-----------------------CeEEEEe-------CCCEEEeCEEE
Confidence 34555666677888999999999999987644 3444443 22369999999
Q ss_pred EecCCCCC
Q 010331 342 WTVGSKPL 349 (513)
Q Consensus 342 ~a~G~~p~ 349 (513)
+|+|....
T Consensus 194 ~aaG~~~~ 201 (380)
T TIGR01377 194 VTAGAWTS 201 (380)
T ss_pred EecCcchH
Confidence 99997643
No 483
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=82.74 E-value=2.1 Score=46.61 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=30.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+.||||||||.||++||..+++ .+.+|+|||+.+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~------~G~~V~lieK~~ 36 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAE------AGVHVDLFSLVP 36 (589)
T ss_pred CccEEEECchHHHHHHHHHHHH------cCCcEEEEEccC
Confidence 3589999999999999999988 456999999865
No 484
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.65 E-value=2.5 Score=41.95 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=30.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+.+|.|||+|..|.++|+.|...+ -.-++.|+|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~----~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKG----LADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCc
Confidence 469999999999999999998743 334899999865
No 485
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.61 E-value=2.1 Score=42.49 Aligned_cols=34 Identities=32% Similarity=0.364 Sum_probs=29.7
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.++|.|||+|.-|...|..|.+ .+++|+++|+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~------~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFAR------KGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHh------CCCeEEEEECCH
Confidence 3689999999999999999988 456999999865
No 486
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=82.43 E-value=2.2 Score=46.33 Aligned_cols=62 Identities=23% Similarity=0.165 Sum_probs=44.1
Q ss_pred CCCCeEeCCCccccC-----CCCEEEEcccccccCCCCCCCC---CchHHHHHHHHHHHHHHHHHHCCCCCC
Q 010331 367 ARGQAETDETLCVKG-----HPRIFALGDSSALRDSSGRPLP---ATAQVAFQQADFAGWNLWAAINDRPLL 430 (513)
Q Consensus 367 ~~G~i~Vd~~l~~~~-----~p~VfaiGD~a~~~~~~g~~~~---~~a~~A~~qg~~~a~ni~~~l~~~~~~ 430 (513)
-.|.+++|+..|+.+ .|++||+|.|+.... |..+| .+...|+-.|+++++++++...++.+.
T Consensus 504 T~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~--g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~~~~ 573 (574)
T PRK12842 504 TFDGLRTDVTGEVLDADGTPIAGLYAVGNDRASIM--GGNYPGAGITLGPIMTFGYITGRHLAGVAGGRKLE 573 (574)
T ss_pred cCCCcCCCCCceEECCCCCCcCCceecccccccCc--cCCCCCCcccHHHHHHHHHHHHHHHHhhhcccccC
Confidence 346677887777643 699999998875322 22222 245678999999999999998887653
No 487
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=82.32 E-value=3 Score=36.15 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=29.3
Q ss_pred eEEEECC-CHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGG-GFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGg-G~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
||.|||+ |..|.++|..|...+. .-++.|+|.++
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l----~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGL----ADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTT----SSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCC----CCceEEeccCc
Confidence 7999999 9999999999988543 34799999876
No 488
>PRK08163 salicylate hydroxylase; Provisional
Probab=82.26 E-value=4.1 Score=41.74 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhC-CcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEe
Q 010331 265 NREAALKVLSAR-KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 343 (513)
Q Consensus 265 ~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a 343 (513)
+.+.+.+.+.+. +|+++.++.++++..++ +++.+.+. +|+++.+|+||.|
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-----------------------~~v~v~~~------~g~~~~ad~vV~A 161 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDG-----------------------DGVTVFDQ------QGNRWTGDALIGC 161 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCC-----------------------CceEEEEc------CCCEEecCEEEEC
Confidence 334445555555 59999999999997644 44555543 6678999999999
Q ss_pred cCCCCC
Q 010331 344 VGSKPL 349 (513)
Q Consensus 344 ~G~~p~ 349 (513)
.|....
T Consensus 162 dG~~S~ 167 (396)
T PRK08163 162 DGVKSV 167 (396)
T ss_pred CCcChH
Confidence 998754
No 489
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=82.16 E-value=2.2 Score=42.29 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=28.7
Q ss_pred eEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 81 ~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
+|+|||+|..|.++|..|...+. ..+++|+|++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~----~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI----ADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC----CCEEEEEeCCc
Confidence 79999999999999999987431 24899999865
No 490
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=82.12 E-value=7 Score=36.35 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=61.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCCCcccCCchhhhhhccccCCcchHhHHHHhcCCCeEEEEEe
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDR 158 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~ 158 (513)
.+-.+|||||-+.+.-|..|.+++. +|-||-+++.|.-.- ++ -+...+..+++++...
T Consensus 157 nk~laVIGGGDsA~EEA~fLtkyas------kVyii~Rrd~fRAs~--------------~M--q~ra~~npnI~v~~nt 214 (322)
T KOG0404|consen 157 NKPLAVIGGGDSAMEEALFLTKYAS------KVYIIHRRDHFRASK--------------IM--QQRAEKNPNIEVLYNT 214 (322)
T ss_pred CCeeEEEcCcHHHHHHHHHHHhhcc------EEEEEEEhhhhhHHH--------------HH--HHHHhcCCCeEEEech
Confidence 4679999999999999999999765 899998888443211 11 1123334566666553
Q ss_pred E-EEEeCCCCcCcCCCceeeccceEecCCceEEEecEEEEeCCCCCCCCCCCC
Q 010331 159 V-KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPG 210 (513)
Q Consensus 159 V-~~id~~~~~~~~~~~v~~~~~~v~~~~g~~i~yD~LVlAtGs~~~~~~ipG 210 (513)
+ ...-.+.+. -..+.+ +.+.+.+...++.+-|+.|.|..|+.--+.|
T Consensus 215 ~~~ea~gd~~~---l~~l~i--kn~~tge~~dl~v~GlFf~IGH~Pat~~l~g 262 (322)
T KOG0404|consen 215 VAVEALGDGKL---LNGLRI--KNVKTGEETDLPVSGLFFAIGHSPATKFLKG 262 (322)
T ss_pred hhhhhccCccc---ccceEE--EecccCcccccccceeEEEecCCchhhHhcC
Confidence 2 111111110 000111 1233334457888888889888876443444
No 491
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=82.11 E-value=3 Score=32.55 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=28.2
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQ 116 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~ 116 (513)
.++++|+|.|..|..++..|.+.+ ..+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~-----~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEG-----GKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-----CCEEEEEcC
Confidence 468999999999999999998852 348999988
No 492
>PRK06184 hypothetical protein; Provisional
Probab=82.09 E-value=4.5 Score=43.10 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEEec
Q 010331 265 NREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTV 344 (513)
Q Consensus 265 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~a~ 344 (513)
+.+.+.+.+.+.|++++.++++.+++.++ +.+.+.+.. ..+++++.+|+||-|.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~-----------------------~~v~v~~~~---~~~~~~i~a~~vVgAD 164 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDA-----------------------DGVTARVAG---PAGEETVRARYLVGAD 164 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcC-----------------------CcEEEEEEe---CCCeEEEEeCEEEECC
Confidence 34455677778899999999999998754 445554421 1256789999999999
Q ss_pred CCCCC
Q 010331 345 GSKPL 349 (513)
Q Consensus 345 G~~p~ 349 (513)
|....
T Consensus 165 G~~S~ 169 (502)
T PRK06184 165 GGRSF 169 (502)
T ss_pred CCchH
Confidence 98753
No 493
>PRK06223 malate dehydrogenase; Reviewed
Probab=81.98 E-value=2.3 Score=42.07 Aligned_cols=34 Identities=32% Similarity=0.320 Sum_probs=28.8
Q ss_pred CeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 80 ~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
.+|.|||+|..|...|..++..+. . +|+|+|.++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~----~-ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL----G-DVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----e-EEEEEECCC
Confidence 589999999999999999987421 3 999999855
No 494
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=81.89 E-value=2.6 Score=38.54 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=28.2
Q ss_pred CCeEEEECC-CHHHHHHHHHhhhccccCCCCCeEEEEeCC
Q 010331 79 KPRICILGG-GFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (513)
Q Consensus 79 ~~~VVIVGg-G~AGl~aA~~L~~~~~~~~~~~~V~lIe~~ 117 (513)
.++++|+|| |..|..+|..|.+. +.+|++++++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCC
Confidence 468999997 99999999999874 4599999875
No 495
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=81.83 E-value=4.1 Score=43.36 Aligned_cols=57 Identities=14% Similarity=-0.031 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHhCCcEEEcCceeeEEeccccccccccCCCcccccccccccCCCceEEEecccccCCcceEEeeceEEE
Q 010331 263 PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLW 342 (513)
Q Consensus 263 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~i~aD~vi~ 342 (513)
..+.+.+.+.++++|++|+.++.|++|..++. ....+++. +++++++|.||+
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~----------------------~~~gv~~~------~g~~~~ad~vV~ 280 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENG----------------------KAVGVKLA------DGEKIYAKRIVS 280 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCC----------------------cEEEEEeC------CCCEEEcCEEEE
Confidence 45566677888999999999999999876431 12223332 677899999999
Q ss_pred ecCCC
Q 010331 343 TVGSK 347 (513)
Q Consensus 343 a~G~~ 347 (513)
++|..
T Consensus 281 a~~~~ 285 (493)
T TIGR02730 281 NATRW 285 (493)
T ss_pred CCChH
Confidence 98864
No 496
>PLN02572 UDP-sulfoquinovose synthase
Probab=81.65 E-value=2.9 Score=43.83 Aligned_cols=37 Identities=35% Similarity=0.619 Sum_probs=30.4
Q ss_pred CCCCCCCeEEEECC-CHHHHHHHHHhhhccccCCCCCeEEEEeC
Q 010331 74 WPDKKKPRICILGG-GFGGLYTALRLESLVWQDDKKPQVLLVDQ 116 (513)
Q Consensus 74 ~~~~~~~~VVIVGg-G~AGl~aA~~L~~~~~~~~~~~~V~lIe~ 116 (513)
++.-+.++|+|.|| |+.|-..+.+|.+ .+++|+++|+
T Consensus 42 ~~~~~~k~VLVTGatGfIGs~Lv~~L~~------~G~~V~~~d~ 79 (442)
T PLN02572 42 SSSSKKKKVMVIGGDGYCGWATALHLSK------RGYEVAIVDN 79 (442)
T ss_pred CccccCCEEEEECCCcHHHHHHHHHHHH------CCCeEEEEec
Confidence 33345678999997 9999999999998 4569999985
No 497
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=81.62 E-value=2.1 Score=41.95 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=30.4
Q ss_pred CCCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 78 ~~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..++|+|||.|..|..+|..|... +.+|+++++++
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSAL------GARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 357999999999999999999884 45999999865
No 498
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=81.60 E-value=2.3 Score=42.75 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=30.1
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..+|+|||+|--|-.+|..|++.|. -+++|||...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGV-----GKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCc
Confidence 4689999999999999999999543 2999999854
No 499
>PRK06849 hypothetical protein; Provisional
Probab=81.47 E-value=2.2 Score=43.83 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=30.7
Q ss_pred CCCeEEEECCCH-HHHHHHHHhhhccccCCCCCeEEEEeCCCC
Q 010331 78 KKPRICILGGGF-GGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (513)
Q Consensus 78 ~~~~VVIVGgG~-AGl~aA~~L~~~~~~~~~~~~V~lIe~~~~ 119 (513)
.+++|+|+|++. .|+..|+.|.+. +++|+++|..+.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~------G~~Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNA------GHTVILADSLKY 39 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCCch
Confidence 357999999997 699999999984 569999998763
No 500
>PRK06175 L-aspartate oxidase; Provisional
Probab=81.46 E-value=2.7 Score=43.94 Aligned_cols=33 Identities=36% Similarity=0.710 Sum_probs=28.9
Q ss_pred CCeEEEECCCHHHHHHHHHhhhccccCCCCCeEEEEeCCC
Q 010331 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (513)
Q Consensus 79 ~~~VVIVGgG~AGl~aA~~L~~~~~~~~~~~~V~lIe~~~ 118 (513)
..||||||+|.||++||..+. .+.+|+||||.+
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-------~G~~V~lleK~~ 36 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-------KDLKILMVSKGK 36 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-------cCCCEEEEecCC
Confidence 469999999999999999974 356999999976
Done!