BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010332
         (513 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FQU|A Chain A, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
 pdb|4FQU|B Chain B, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
 pdb|4FQU|C Chain C, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
 pdb|4FQU|D Chain D, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
 pdb|4FQU|E Chain E, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
 pdb|4FQU|F Chain F, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
 pdb|4FQU|G Chain G, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
 pdb|4FQU|H Chain H, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
           Chlorophenolicum
          Length = 313

 Score = 30.4 bits (67), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 329 LTEAFIDVSYFEWPSPSYVERPLPQAKRV-LELLEGVNEIKFMSLSAETMFALDLAYEDF 387
           L  AF DV     P   Y     P+  R+   + E +N   + S  A T  A +   E F
Sbjct: 145 LNSAFDDVGAL--PGDYYPAEFRPEIDRINARVYETLNNGVYRSGFATTQEAYE---EAF 199

Query: 388 FPTFPNLTYLEVHIGGTSW 406
           +P F  L +LE H+ G  W
Sbjct: 200 YPLFDTLDWLEEHLTGREW 218


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,463,591
Number of Sequences: 62578
Number of extensions: 577413
Number of successful extensions: 1723
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1723
Number of HSP's gapped (non-prelim): 2
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)