Query 010332
Match_columns 513
No_of_seqs 190 out of 1713
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 23:17:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.5 5.8E-15 1.2E-19 136.9 -0.1 292 24-425 94-395 (419)
2 smart00579 FBD domain in FBox 99.4 5E-13 1.1E-17 101.8 8.0 72 442-513 1-72 (72)
3 KOG4341 F-box protein containi 99.4 5.4E-14 1.2E-18 136.2 1.6 265 203-487 162-439 (483)
4 PF08387 FBD: FBD; InterPro: 99.1 7.9E-11 1.7E-15 82.4 4.7 49 435-483 1-51 (51)
5 PF12937 F-box-like: F-box-lik 98.7 2E-08 4.2E-13 69.3 3.2 35 29-63 1-35 (47)
6 PLN00113 leucine-rich repeat r 98.6 3.8E-08 8.3E-13 113.0 5.9 149 168-336 93-245 (968)
7 cd00116 LRR_RI Leucine-rich re 98.4 1.1E-07 2.5E-12 94.5 2.2 19 463-481 296-314 (319)
8 PLN00113 leucine-rich repeat r 98.4 1.8E-07 3.9E-12 107.5 3.9 68 196-265 155-223 (968)
9 PF00646 F-box: F-box domain; 98.2 5E-07 1.1E-11 62.6 1.6 37 29-65 3-39 (48)
10 KOG4194 Membrane glycoprotein 98.1 2.1E-07 4.5E-12 94.6 -2.4 54 205-260 197-252 (873)
11 KOG1909 Ran GTPase-activating 98.1 9E-07 2E-11 84.9 1.8 179 225-429 89-282 (382)
12 cd00116 LRR_RI Leucine-rich re 98.1 1.1E-06 2.3E-11 87.5 2.1 249 204-487 22-291 (319)
13 smart00256 FBOX A Receptor for 98.1 2.7E-06 5.8E-11 56.6 3.0 33 32-64 1-33 (41)
14 PLN03210 Resistant to P. syrin 98.0 1.1E-05 2.4E-10 93.8 7.1 88 194-288 601-691 (1153)
15 PLN03210 Resistant to P. syrin 98.0 7.6E-06 1.7E-10 95.1 5.3 114 195-317 578-692 (1153)
16 KOG3207 Beta-tubulin folding c 97.9 7.2E-07 1.6E-11 87.9 -3.3 209 204-431 120-340 (505)
17 KOG4194 Membrane glycoprotein 97.8 7.3E-06 1.6E-10 83.7 2.2 128 202-336 99-230 (873)
18 KOG2120 SCF ubiquitin ligase, 97.8 3.4E-07 7.5E-12 85.8 -7.7 36 229-265 186-221 (419)
19 KOG4341 F-box protein containi 97.6 1.6E-06 3.5E-11 85.0 -5.9 230 206-454 139-380 (483)
20 KOG2982 Uncharacterized conser 97.5 8.7E-05 1.9E-09 70.0 4.0 251 200-471 40-307 (418)
21 KOG3207 Beta-tubulin folding c 97.4 2.6E-05 5.6E-10 77.1 -1.2 108 204-318 171-283 (505)
22 KOG0618 Serine/threonine phosp 97.3 1E-05 2.3E-10 86.7 -5.6 71 156-242 254-324 (1081)
23 KOG1947 Leucine rich repeat pr 97.2 9.3E-06 2E-10 85.5 -6.9 41 26-66 42-82 (482)
24 PF14580 LRR_9: Leucine-rich r 97.0 6.8E-05 1.5E-09 67.1 -2.5 57 204-264 41-98 (175)
25 PF07723 LRR_2: Leucine Rich R 96.9 0.0011 2.4E-08 38.9 2.9 25 229-253 1-26 (26)
26 PF14580 LRR_9: Leucine-rich r 96.9 0.00021 4.5E-09 64.0 -0.6 124 203-335 17-148 (175)
27 PRK15387 E3 ubiquitin-protein 96.8 0.0019 4.1E-08 70.9 5.6 21 409-429 437-457 (788)
28 KOG0444 Cytoskeletal regulator 96.7 3.2E-05 7E-10 79.6 -7.4 161 194-380 92-260 (1255)
29 PRK15387 E3 ubiquitin-protein 96.7 0.0029 6.3E-08 69.5 6.7 102 194-318 213-314 (788)
30 KOG3665 ZYG-1-like serine/thre 96.7 0.00069 1.5E-08 73.8 1.8 218 228-482 60-283 (699)
31 PF13855 LRR_8: Leucine rich r 96.7 0.0006 1.3E-08 49.6 0.9 58 205-264 1-59 (61)
32 PRK15370 E3 ubiquitin-protein 96.7 0.00073 1.6E-08 74.3 1.7 59 365-429 367-427 (754)
33 KOG1947 Leucine rich repeat pr 96.6 7.5E-05 1.6E-09 78.6 -6.1 113 201-316 210-331 (482)
34 KOG1259 Nischarin, modulator o 96.5 0.0011 2.3E-08 62.9 1.4 144 304-469 305-450 (490)
35 KOG1909 Ran GTPase-activating 96.5 0.00076 1.7E-08 65.2 0.4 57 204-260 29-99 (382)
36 PRK15370 E3 ubiquitin-protein 96.4 0.0031 6.8E-08 69.4 4.3 106 194-319 190-296 (754)
37 KOG3665 ZYG-1-like serine/thre 96.1 0.0023 5.1E-08 69.7 1.6 60 205-265 122-184 (699)
38 KOG0444 Cytoskeletal regulator 95.9 0.00019 4E-09 74.2 -7.3 63 390-454 220-299 (1255)
39 PF12799 LRR_4: Leucine Rich r 95.2 0.0078 1.7E-07 40.5 0.9 37 206-242 2-38 (44)
40 PF13855 LRR_8: Leucine rich r 95.2 0.013 2.7E-07 42.5 2.0 46 194-239 13-60 (61)
41 COG5238 RNA1 Ran GTPase-activa 94.9 0.02 4.3E-07 53.8 2.8 179 223-428 87-283 (388)
42 KOG0281 Beta-TrCP (transducin 94.8 0.013 2.8E-07 56.4 1.4 38 25-62 71-112 (499)
43 KOG4237 Extracellular matrix p 94.7 0.011 2.5E-07 58.2 0.7 49 194-242 79-130 (498)
44 KOG0617 Ras suppressor protein 93.9 0.0027 5.9E-08 55.4 -4.7 67 194-260 68-134 (264)
45 KOG0617 Ras suppressor protein 93.2 0.0019 4.2E-08 56.3 -6.8 41 196-236 47-87 (264)
46 COG4886 Leucine-rich repeat (L 93.0 0.026 5.7E-07 57.9 -0.3 167 204-402 115-287 (394)
47 KOG1644 U2-associated snRNP A' 92.9 0.13 2.8E-06 46.5 4.0 103 359-468 58-162 (233)
48 KOG2982 Uncharacterized conser 92.8 0.095 2.1E-06 50.1 3.2 88 326-429 70-158 (418)
49 KOG1644 U2-associated snRNP A' 91.9 0.28 6E-06 44.4 4.8 60 203-264 62-123 (233)
50 PF12799 LRR_4: Leucine Rich r 91.5 0.083 1.8E-06 35.4 0.9 36 228-266 1-36 (44)
51 KOG0618 Serine/threonine phosp 91.5 0.027 5.9E-07 61.4 -2.2 195 194-428 80-275 (1081)
52 KOG2739 Leucine-rich acidic nu 91.4 0.031 6.8E-07 52.3 -1.7 110 203-316 41-153 (260)
53 KOG2997 F-box protein FBX9 [Ge 90.9 0.11 2.3E-06 49.9 1.3 37 26-62 104-145 (366)
54 PLN03215 ascorbic acid mannose 90.8 0.16 3.5E-06 50.9 2.5 37 29-65 4-41 (373)
55 PLN03150 hypothetical protein; 90.3 0.16 3.5E-06 55.4 2.2 80 206-288 419-500 (623)
56 KOG2123 Uncharacterized conser 88.9 0.026 5.6E-07 53.3 -4.4 61 361-424 59-124 (388)
57 PRK15386 type III secretion pr 88.8 0.7 1.5E-05 47.0 5.2 68 205-286 72-140 (426)
58 KOG1859 Leucine-rich repeat pr 88.3 0.014 2.9E-07 62.0 -7.3 22 198-219 102-123 (1096)
59 KOG1259 Nischarin, modulator o 87.8 0.71 1.5E-05 44.4 4.2 169 226-429 212-386 (490)
60 KOG4658 Apoptotic ATPase [Sign 86.8 0.24 5.3E-06 55.8 0.7 104 203-316 543-652 (889)
61 PLN03150 hypothetical protein; 86.6 0.45 9.7E-06 52.0 2.6 59 201-260 438-497 (623)
62 COG5238 RNA1 Ran GTPase-activa 85.4 0.6 1.3E-05 44.2 2.4 203 204-429 29-254 (388)
63 KOG0472 Leucine-rich repeat pr 83.6 0.23 5E-06 49.5 -1.1 42 388-431 501-542 (565)
64 PF13013 F-box-like_2: F-box-l 83.3 0.9 2E-05 37.0 2.3 30 28-57 21-50 (109)
65 KOG2123 Uncharacterized conser 81.1 0.11 2.4E-06 49.2 -4.2 59 204-265 40-99 (388)
66 KOG0274 Cdc4 and related F-box 80.9 0.81 1.8E-05 48.7 1.6 42 21-62 100-141 (537)
67 KOG0472 Leucine-rich repeat pr 80.5 0.14 3.1E-06 50.9 -3.8 113 194-317 195-308 (565)
68 KOG2739 Leucine-rich acidic nu 77.6 0.4 8.7E-06 45.1 -1.7 23 297-319 82-104 (260)
69 COG4886 Leucine-rich repeat (L 77.1 0.65 1.4E-05 47.6 -0.6 156 194-377 128-289 (394)
70 PF13504 LRR_7: Leucine rich r 73.4 2.1 4.5E-05 22.1 1.1 14 206-219 2-15 (17)
71 PF13516 LRR_6: Leucine Rich r 70.7 1.8 3.8E-05 24.5 0.5 19 228-246 2-20 (24)
72 smart00367 LRR_CC Leucine-rich 69.4 2.3 5E-05 24.6 0.8 11 228-238 2-12 (26)
73 PF00560 LRR_1: Leucine Rich R 69.2 2.8 6E-05 23.2 1.0 17 206-222 1-17 (22)
74 PRK15386 type III secretion pr 68.8 6.1 0.00013 40.4 4.1 50 167-237 71-121 (426)
75 KOG3864 Uncharacterized conser 64.5 3 6.5E-05 37.9 0.9 40 390-429 123-163 (221)
76 KOG4658 Apoptotic ATPase [Sign 60.7 3.5 7.6E-05 46.8 0.8 90 196-288 561-652 (889)
77 KOG3864 Uncharacterized conser 59.4 1.3 2.9E-05 40.2 -2.3 39 226-265 123-162 (221)
78 KOG0531 Protein phosphatase 1, 59.0 3.5 7.6E-05 42.6 0.4 80 202-288 92-172 (414)
79 PF08387 FBD: FBD; InterPro: 52.8 15 0.00033 25.2 2.7 34 392-425 14-50 (51)
80 KOG4579 Leucine-rich repeat (L 45.5 4.6 0.0001 34.5 -1.1 57 205-264 53-110 (177)
81 KOG0532 Leucine-rich repeat (L 44.8 0.54 1.2E-05 49.0 -8.0 40 361-402 230-270 (722)
82 KOG3926 F-box proteins [Amino 43.7 6.7 0.00014 37.1 -0.4 51 26-76 199-256 (332)
83 KOG4237 Extracellular matrix p 40.6 5.5 0.00012 40.0 -1.5 34 208-241 70-104 (498)
84 KOG0531 Protein phosphatase 1, 38.7 8.9 0.00019 39.6 -0.5 59 201-265 114-173 (414)
85 smart00368 LRR_RI Leucine rich 38.6 18 0.00038 21.4 1.0 21 228-248 2-22 (28)
86 KOG1859 Leucine-rich repeat pr 37.3 4.8 0.0001 43.7 -2.7 56 227-287 186-241 (1096)
87 PF09372 PRANC: PRANC domain; 34.8 27 0.00058 27.7 1.9 25 27-51 70-94 (97)
88 smart00579 FBD domain in FBox 33.5 63 0.0014 23.8 3.6 37 392-428 5-44 (72)
89 smart00369 LRR_TYP Leucine-ric 32.1 22 0.00048 20.2 0.7 18 205-222 2-19 (26)
90 smart00370 LRR Leucine-rich re 32.1 22 0.00048 20.2 0.7 18 205-222 2-19 (26)
91 COG4829 CatC1 Muconolactone de 30.0 18 0.00038 27.8 0.0 36 31-66 10-47 (98)
92 KOG4579 Leucine-rich repeat (L 29.9 12 0.00026 32.1 -0.9 65 194-260 65-130 (177)
93 KOG4408 Putative Mg2+ and Co2+ 25.9 21 0.00045 35.0 -0.2 39 29-67 8-46 (386)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.8e-15 Score=136.90 Aligned_cols=292 Identities=17% Similarity=0.154 Sum_probs=165.4
Q ss_pred CCCcccCCCChHHHHHHhcCCchhhhhhhhhhhhhhHHhhcc---CcceEeecCCCCCccchhhhhhhhhhhHHHHhhhh
Q 010332 24 DSEDRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTW---LSNLCFDDEFCERPAIDDALTKDTAQRFDKFVHRL 100 (513)
Q Consensus 24 ~~~D~is~LPd~iL~~Ils~Lp~kda~rts~lSrRWr~lw~~---~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 100 (513)
++.. +..|||||+..||+.|+.|+..+.+.|||||.++-.. .-.+++.+..+.+ ....+.+.
T Consensus 94 pgv~-~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p------------~~l~~l~~-- 158 (419)
T KOG2120|consen 94 PGVS-WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP------------DVLGRLLS-- 158 (419)
T ss_pred CCCC-cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh------------hHHHHHHh--
Confidence 3444 6789999999999999999999999999999975321 1235555555531 11122221
Q ss_pred cccccCccccccccccCCCCCCCcccccccccccccccccceeEEEeccCCCCCchhHHHHHHHHHhCCceEEEEEeecC
Q 010332 101 SLRALDPLFGLTNTFAGMNAYPRIGFEDFVNWVLDRTNSATLAKFSLQCSNLTDLSLLKFWVSSAIMRNVREIEIYLESH 180 (513)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~ 180 (513)
+| +. .|++.-... +...+.... ...+.+++.+++.-+.-
T Consensus 159 -------------------rg------------V~------v~Rlar~~~---~~prlae~~-~~frsRlq~lDLS~s~i 197 (419)
T KOG2120|consen 159 -------------------RG------------VI------VFRLARSFM---DQPRLAEHF-SPFRSRLQHLDLSNSVI 197 (419)
T ss_pred -------------------CC------------eE------EEEcchhhh---cCchhhhhh-hhhhhhhHHhhcchhhe
Confidence 11 23 333332111 111111111 12334677777761110
Q ss_pred CccceeeccCCCcccccCCCCcCCCcccEEEEeeeeccccC-CCccccCCcceEEeeeEE-eCcchHHHHhhcCCcccee
Q 010332 181 GLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIP-PSGLCFPCLKFLHIEMYC-LPNNLTERLFSACPVLEEL 258 (513)
Q Consensus 181 ~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~-~~~~~~~~Lk~L~L~~~~-~~~~~l~~lls~cp~Le~L 258 (513)
. .-.+-.-+..|..|+.|+|-|..+.+-. ..-+.-.+|+.|+|+.+. ++...++-++++|..|.+|
T Consensus 198 ---------t---~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 198 ---------T---VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred ---------e---HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 0 1122222345899999999999987711 112356789999999886 5668899999999999999
Q ss_pred EeeeeeeccCCceeEEEe--cCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCeeEEEEEE
Q 010332 259 SIVGLLVNADVVTNFNIS--SPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDV 336 (513)
Q Consensus 259 ~L~~~c~~~~~~~~l~i~--~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~ 336 (513)
+| ..|......-.+.|+ +++|+.|.+++|...+. .+...-+.-.+|+|..|+++++..
T Consensus 266 Nl-sWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~-~sh~~tL~~rcp~l~~LDLSD~v~------------------ 325 (419)
T KOG2120|consen 266 NL-SWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ-KSHLSTLVRRCPNLVHLDLSDSVM------------------ 325 (419)
T ss_pred Cc-hHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh-hhHHHHHHHhCCceeeeccccccc------------------
Confidence 99 988641111111122 46777777777622211 112222333556666666665521
Q ss_pred EeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccC---CCCCcCcccEEEEEeccCCHHHHHHHH
Q 010332 337 SYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYED---FFPTFPNLTYLEVHIGGTSWKLLLAIL 413 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~---~~p~~~~Lk~L~l~~~~~~~~~l~~lL 413 (513)
....+...+-.++.+++|.++-+.. +.+. .+...+.|.+|++..+..+ ..+.-+.
T Consensus 326 ----------------l~~~~~~~~~kf~~L~~lSlsRCY~-----i~p~~~~~l~s~psl~yLdv~g~vsd-t~mel~~ 383 (419)
T KOG2120|consen 326 ----------------LKNDCFQEFFKFNYLQHLSLSRCYD-----IIPETLLELNSKPSLVYLDVFGCVSD-TTMELLK 383 (419)
T ss_pred ----------------cCchHHHHHHhcchheeeehhhhcC-----CChHHeeeeccCcceEEEEeccccCc-hHHHHHH
Confidence 1113444455566667666664332 2222 2446667777777665332 3455556
Q ss_pred hcCCCcceEEEE
Q 010332 414 NSLPNLEVLLIH 425 (513)
Q Consensus 414 ~~~P~Le~L~i~ 425 (513)
..||+|+.-.-.
T Consensus 384 e~~~~lkin~q~ 395 (419)
T KOG2120|consen 384 EMLSHLKINCQH 395 (419)
T ss_pred HhCcccccccee
Confidence 677776654443
No 2
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.43 E-value=5e-13 Score=101.78 Aligned_cols=72 Identities=43% Similarity=0.683 Sum_probs=65.5
Q ss_pred ccccccccEEEEEEecCcHHHHHHHHHHHhcccCcCcEEEEeccCCchhHHHHHHHHHhccCCCCCCeEEeC
Q 010332 442 RCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKSWAQTSQEKLKQCQELLMFERASKFCQVEFL 513 (513)
Q Consensus 442 ~c~~~~Lk~v~i~~f~g~~~e~~l~~~lL~~a~~Le~~~i~~~~~~~~~~~~~~~~l~~~~raS~~~~i~~~ 513 (513)
+|+.++|++|+|.+|.|..+|+++++|||+||+.||+|+|.......+...++.++|..++|||++|+|.|.
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEeC
Confidence 488899999999999999999999999999999999999999876555556788999999999999999874
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.40 E-value=5.4e-14 Score=136.20 Aligned_cols=265 Identities=14% Similarity=0.107 Sum_probs=161.0
Q ss_pred CCCcccEEEEeeeeccccC---CCccccCCcceEEeeeE-EeCcchHHHHhhcCCccceeEeeeeeec--cCCceeEEEe
Q 010332 203 TSTTLEVLVLYSDFVINIP---PSGLCFPCLKFLHIEMY-CLPNNLTERLFSACPVLEELSIVGLLVN--ADVVTNFNIS 276 (513)
Q Consensus 203 ~~~~L~~L~L~~~~l~~~~---~~~~~~~~Lk~L~L~~~-~~~~~~l~~lls~cp~Le~L~L~~~c~~--~~~~~~l~i~ 276 (513)
.|+++++|.+.+|....-. ..+..|+.|+.|+|..| .+++..++.+..+||+|++|.+ ..|.. .++++.+.-.
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNl-Swc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNL-SWCPQISGNGVQALQRG 240 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhh-ccCchhhcCcchHHhcc
Confidence 4778888888777632200 11236888888888884 4666777778888888888888 88864 2334444444
Q ss_pred cCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccc-ccee----eccCCCeeEEEEEEEeecCCCCCccCCCC
Q 010332 277 SPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHAL-VSYM----VHELHSLTEAFIDVSYFEWPSPSYVERPL 351 (513)
Q Consensus 277 ~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~-~~~~----~~~~p~L~~~~l~~~~~~~~~~~~~~~~~ 351 (513)
+..++.+...+| ..........+.-..+.+..+.+..+.. .... -..+..|+.++...+. +
T Consensus 241 ~~~l~~~~~kGC--~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t-------~----- 306 (483)
T KOG4341|consen 241 CKELEKLSLKGC--LELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCT-------D----- 306 (483)
T ss_pred chhhhhhhhccc--ccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCC-------C-----
Confidence 455666666666 2211111222222334444444323211 0000 0112233333332221 1
Q ss_pred chhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCC-CCcCcccEEEEEeccCCHH-HHHHHHhcCCCcceEEEEeccc
Q 010332 352 PQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFF-PTFPNLTYLEVHIGGTSWK-LLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 352 ~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~-p~~~~Lk~L~l~~~~~~~~-~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
.++..+..+-+++++++.|.++....-.. .....+ ...+.|+.|++..+....+ .+.++-.+||.|++|.+..+..
T Consensus 307 ~~d~~l~aLg~~~~~L~~l~l~~c~~fsd--~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 307 ITDEVLWALGQHCHNLQVLELSGCQQFSD--RGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL 384 (483)
T ss_pred CchHHHHHHhcCCCceEEEeccccchhhh--hhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh
Confidence 35667788889999999999988654220 111112 2678899999999987665 5899999999999999997664
Q ss_pred CCCCCccccCccccccccccEEEEEEecCcHHHHHHHHHHHhcccCcCcEEEEeccCC
Q 010332 430 RDSGFIFEEPVPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKSWAQT 487 (513)
Q Consensus 430 ~~~~~~w~~~~~~c~~~~Lk~v~i~~f~g~~~e~~l~~~lL~~a~~Le~~~i~~~~~~ 487 (513)
..++++-.-....|.+++|.++++.+-.+... +..+++ .+.++||++.++.-...
T Consensus 385 itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d--~~Le~l-~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 385 ITDEGIRHLSSSSCSLEGLEVLELDNCPLITD--ATLEHL-SICRNLERIELIDCQDV 439 (483)
T ss_pred hhhhhhhhhhhccccccccceeeecCCCCchH--HHHHHH-hhCcccceeeeechhhh
Confidence 43333322234467889999999987776643 344444 58889999887765543
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.12 E-value=7.9e-11 Score=82.43 Aligned_cols=49 Identities=41% Similarity=0.773 Sum_probs=44.7
Q ss_pred ccccC--ccccccccccEEEEEEecCcHHHHHHHHHHHhcccCcCcEEEEe
Q 010332 435 IFEEP--VPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKS 483 (513)
Q Consensus 435 ~w~~~--~~~c~~~~Lk~v~i~~f~g~~~e~~l~~~lL~~a~~Le~~~i~~ 483 (513)
+|.++ .|+|+.+|||.|+|.||.|..+|++|++|+++||++||+|+|..
T Consensus 1 ~W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 1 FWIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred CCCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence 47443 68999999999999999999999999999999999999999963
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.65 E-value=2e-08 Score=69.31 Aligned_cols=35 Identities=34% Similarity=0.650 Sum_probs=31.2
Q ss_pred cCCCChHHHHHHhcCCchhhhhhhhhhhhhhHHhh
Q 010332 29 ISRLPDPILCHILSFLPAKHAVATRILSSRWNLVW 63 (513)
Q Consensus 29 is~LPd~iL~~Ils~Lp~kda~rts~lSrRWr~lw 63 (513)
|+.||+||+.+||++||.+|.++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999865
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.61 E-value=3.8e-08 Score=113.00 Aligned_cols=149 Identities=17% Similarity=0.117 Sum_probs=86.0
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCCCCc-CCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPESLC-TSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTE 246 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~ 246 (513)
.+++.|++. .+. ....+|..++ .+.+|++|+|+++.+.+..| ...+++|++|+|+++.+.. .+.
T Consensus 93 ~~L~~L~Ls----------~n~---~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~~-~~p 157 (968)
T PLN00113 93 PYIQTINLS----------NNQ---LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSG-EIP 157 (968)
T ss_pred CCCCEEECC----------CCc---cCCcCChHHhccCCCCCEEECcCCccccccC-ccccCCCCEEECcCCcccc-cCC
Confidence 678888875 110 0236777776 67889999998888765323 2457888888888887754 233
Q ss_pred HHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEecccc---ceee
Q 010332 247 RLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALV---SYMV 323 (513)
Q Consensus 247 ~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~---~~~~ 323 (513)
.-+.+++.|+.|+| ..|.....+...-...++|+.|.+.++ ... .......-..++|++|.+.++... ...+
T Consensus 158 ~~~~~l~~L~~L~L-~~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 158 NDIGSFSSLKVLDL-GGNVLVGKIPNSLTNLTSLEFLTLASN--QLV--GQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred hHHhcCCCCCEEEC-ccCcccccCChhhhhCcCCCeeeccCC--CCc--CcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence 34677888888888 776431111111112356777777766 210 000001123466777776665322 1124
Q ss_pred ccCCCeeEEEEEE
Q 010332 324 HELHSLTEAFIDV 336 (513)
Q Consensus 324 ~~~p~L~~~~l~~ 336 (513)
..+++|+.+++..
T Consensus 233 ~~l~~L~~L~L~~ 245 (968)
T PLN00113 233 GGLTSLNHLDLVY 245 (968)
T ss_pred hcCCCCCEEECcC
Confidence 5566666666643
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.39 E-value=1.1e-07 Score=94.52 Aligned_cols=19 Identities=32% Similarity=0.218 Sum_probs=8.3
Q ss_pred HHHHHHHHhcccCcCcEEE
Q 010332 463 FQLVKYFLKNIVSLEKLIV 481 (513)
Q Consensus 463 ~~l~~~lL~~a~~Le~~~i 481 (513)
..+++-+..+++.|+.+.|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 296 QLLAESLLEPGNELESLWV 314 (319)
T ss_pred HHHHHHHhhcCCchhhccc
Confidence 3444444444444444443
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.39 E-value=1.8e-07 Score=107.48 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=33.6
Q ss_pred ccCCCCcCCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 196 ELPESLCTSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 196 ~lp~~l~~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
.+|..+..+++|++|+|++|.+....| ....+++|++|+|.++.+.+ .+..-+.+++.|+.|.| ..+.
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L-~~n~ 223 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYL-GYNN 223 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEEC-cCCc
Confidence 344444455566666666655443222 22345566666665555432 12223445556666666 5443
No 9
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.22 E-value=5e-07 Score=62.56 Aligned_cols=37 Identities=38% Similarity=0.608 Sum_probs=31.5
Q ss_pred cCCCChHHHHHHhcCCchhhhhhhhhhhhhhHHhhcc
Q 010332 29 ISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTW 65 (513)
Q Consensus 29 is~LPd~iL~~Ils~Lp~kda~rts~lSrRWr~lw~~ 65 (513)
|++||+|++.+||++|+.+|.++.+.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 6789999999999999999999999999999998654
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.14 E-value=2.1e-07 Score=94.57 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=30.3
Q ss_pred CcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCc-chHHHHhhcCCccceeEe
Q 010332 205 TTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPN-NLTERLFSACPVLEELSI 260 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~-~~l~~lls~cp~Le~L~L 260 (513)
.+|..|+|+.+++..+|+.. ..+|+|+.|+|....+.. +.+. +.+.|+|+.|.|
T Consensus 197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl~nlkl 252 (873)
T KOG4194|consen 197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSLQNLKL 252 (873)
T ss_pred chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh--hcCchhhhhhhh
Confidence 46666666666666654433 346666666666665543 2222 455566666666
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.13 E-value=9e-07 Score=84.90 Aligned_cols=179 Identities=21% Similarity=0.184 Sum_probs=113.5
Q ss_pred cccCCcceEEeeeEEeCc---chHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEeecCCCCCCCCcceE
Q 010332 225 LCFPCLKFLHIEMYCLPN---NLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKI 301 (513)
Q Consensus 225 ~~~~~Lk~L~L~~~~~~~---~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i 301 (513)
.++|+|++|+|+.+.+.. ..+..++++|..||+|.| .+|.. +...-..-+..|..|. ...-
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L-~N~Gl--g~~ag~~l~~al~~l~-------------~~kk 152 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYL-NNCGL--GPEAGGRLGRALFELA-------------VNKK 152 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhh-hcCCC--ChhHHHHHHHHHHHHH-------------HHhc
Confidence 467889999999888876 678899999999999999 99965 2111111111121111 0111
Q ss_pred EEeCCceeEEEEEeccccce-------eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEc
Q 010332 302 LIRAPNLERFHIIDHALVSY-------MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSA 374 (513)
Q Consensus 302 ~i~ap~L~~L~l~~~~~~~~-------~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 374 (513)
.-+.|+|+.|....+..... .+...|.|+++.+...... + .....+..-+..+++++.|+|..
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~---------~-eG~~al~eal~~~~~LevLdl~D 222 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR---------P-EGVTALAEALEHCPHLEVLDLRD 222 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc---------C-chhHHHHHHHHhCCcceeeeccc
Confidence 22456666666655432111 2334566666666443311 0 23346677788999999999998
Q ss_pred chhhhhh-hhccCCCCCcCcccEEEEEeccC---CHHHH-HHHHhcCCCcceEEEEeccc
Q 010332 375 ETMFALD-LAYEDFFPTFPNLTYLEVHIGGT---SWKLL-LAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 375 ~~~~~~~-~~~~~~~p~~~~Lk~L~l~~~~~---~~~~l-~~lL~~~P~Le~L~i~~~~~ 429 (513)
+.+..-- ......+|.+++|+.|.+..|.. +..++ -.+-+..|+|+.|.+.++..
T Consensus 223 Ntft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 223 NTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred chhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 8766421 12233478999999999999853 33444 34446789999999998764
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.12 E-value=1.1e-06 Score=87.54 Aligned_cols=249 Identities=16% Similarity=0.116 Sum_probs=130.9
Q ss_pred CCcccEEEEeeeeccc-----cCCCccccCCcceEEeeeEEeC--c---chHHHHhhcCCccceeEeeeeeeccCCc---
Q 010332 204 STTLEVLVLYSDFVIN-----IPPSGLCFPCLKFLHIEMYCLP--N---NLTERLFSACPVLEELSIVGLLVNADVV--- 270 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~-----~~~~~~~~~~Lk~L~L~~~~~~--~---~~l~~lls~cp~Le~L~L~~~c~~~~~~--- 270 (513)
...|+.|.|.++.+.. ++.....++.|++|++.+..+. . ..+...+..++.|++|+| ..|......
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDL-SDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEc-cCCCCChhHHHH
Confidence 3558888888887633 1112235667888888877665 2 223344556778888888 766541000
Q ss_pred -eeEEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccC-CCeeEEEEEEEeecCCCCCccC
Q 010332 271 -TNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHEL-HSLTEAFIDVSYFEWPSPSYVE 348 (513)
Q Consensus 271 -~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~-p~L~~~~l~~~~~~~~~~~~~~ 348 (513)
..+.-. ++|+.|.+.+| ... +.....+ ...+..+ ++|+++++..+...
T Consensus 101 ~~~l~~~-~~L~~L~ls~~--~~~-~~~~~~l------------------~~~l~~~~~~L~~L~L~~n~l~-------- 150 (319)
T cd00116 101 LESLLRS-SSLQELKLNNN--GLG-DRGLRLL------------------AKGLKDLPPALEKLVLGRNRLE-------- 150 (319)
T ss_pred HHHHhcc-CcccEEEeeCC--ccc-hHHHHHH------------------HHHHHhCCCCceEEEcCCCcCC--------
Confidence 000001 23555555544 110 0000000 0011223 45555555332200
Q ss_pred CCCchhhHHHHHccCCCcceEEEEEcchhhhhhh-hccCCCCCcCcccEEEEEeccCC---HHHHHHHHhcCCCcceEEE
Q 010332 349 RPLPQAKRVLELLEGVNEIKFMSLSAETMFALDL-AYEDFFPTFPNLTYLEVHIGGTS---WKLLLAILNSLPNLEVLLI 424 (513)
Q Consensus 349 ~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~-~~~~~~p~~~~Lk~L~l~~~~~~---~~~l~~lL~~~P~Le~L~i 424 (513)
. .....+...+..++++++|+++.+.+..-.. .....++.+++|++|++..+... ...+...+..+|+|+.|++
T Consensus 151 ~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~l 228 (319)
T cd00116 151 G--ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228 (319)
T ss_pred c--hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEec
Confidence 0 1123455667777889999998876653100 01112445679999999887532 3456677788999999999
Q ss_pred EecccCCCCCccc-cCccccccccccEEEEEEec-CcHHHHHHHHHHHhcccCcCcEEEEeccCC
Q 010332 425 HSHAVRDSGFIFE-EPVPRCLLFHVKKIEMRSFG-GYEHEFQLVKYFLKNIVSLEKLIVKSWAQT 487 (513)
Q Consensus 425 ~~~~~~~~~~~w~-~~~~~c~~~~Lk~v~i~~f~-g~~~e~~l~~~lL~~a~~Le~~~i~~~~~~ 487 (513)
..+...+.+.... ..... ....|+.+.+.+-. +...-..+++.+- +.+.|+.+.+....-.
T Consensus 229 s~n~l~~~~~~~l~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~-~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 229 GDNNLTDAGAAALASALLS-PNISLLTLSLSCNDITDDGAKDLAEVLA-EKESLLELDLRGNKFG 291 (319)
T ss_pred CCCcCchHHHHHHHHHHhc-cCCCceEEEccCCCCCcHHHHHHHHHHh-cCCCccEEECCCCCCc
Confidence 8865432110000 00000 13678888887443 2223345556544 4488998877764433
No 13
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.09 E-value=2.7e-06 Score=56.57 Aligned_cols=33 Identities=45% Similarity=0.665 Sum_probs=31.2
Q ss_pred CChHHHHHHhcCCchhhhhhhhhhhhhhHHhhc
Q 010332 32 LPDPILCHILSFLPAKHAVATRILSSRWNLVWT 64 (513)
Q Consensus 32 LPd~iL~~Ils~Lp~kda~rts~lSrRWr~lw~ 64 (513)
||+|++.+|+++|+.+|.++.+.+||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999998763
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.97 E-value=1.1e-05 Score=93.77 Aligned_cols=88 Identities=11% Similarity=0.032 Sum_probs=51.6
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeE
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNF 273 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l 273 (513)
...+|..+ ...+|+.|+|.++.+..++.....+++|+.|+|+++.... .+.. ++.++.||.|.| .+|.. +..+
T Consensus 601 l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L-~~c~~---L~~l 673 (1153)
T PLN03210 601 LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKL-SDCSS---LVEL 673 (1153)
T ss_pred CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEe-cCCCC---cccc
Confidence 34555543 5677888888888777665555567888888887654221 1111 556777777777 76642 2111
Q ss_pred EE---ecCccceEEEEee
Q 010332 274 NI---SSPTLKKLGIRFD 288 (513)
Q Consensus 274 ~i---~~~~Lr~L~i~~~ 288 (513)
.. ..++|+.|.+.+|
T Consensus 674 p~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 674 PSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred chhhhccCCCCEEeCCCC
Confidence 11 1245666666655
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.95 E-value=7.6e-06 Score=95.15 Aligned_cols=114 Identities=14% Similarity=0.028 Sum_probs=66.5
Q ss_pred cccCCCCcCC-CcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeE
Q 010332 195 VELPESLCTS-TTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNF 273 (513)
Q Consensus 195 ~~lp~~l~~~-~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l 273 (513)
..+|..+... ..|+.|.+.++.+..+ |....+.+|+.|+|.++.+.. +..-+..++.|+.|+| ..|.....+..+
T Consensus 578 ~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~L-s~~~~l~~ip~l 653 (1153)
T PLN03210 578 WHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNFRPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDL-RGSKNLKEIPDL 653 (1153)
T ss_pred eecCcchhhcCcccEEEEecCCCCCCC-CCcCCccCCcEEECcCccccc--cccccccCCCCCEEEC-CCCCCcCcCCcc
Confidence 4566655443 4688888888877666 444567888888888876653 2122457788888888 766321122221
Q ss_pred EEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEecc
Q 010332 274 NISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHA 317 (513)
Q Consensus 274 ~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~ 317 (513)
-..++|+.|.+.+|... .......-..++|++|.+.++.
T Consensus 654 -s~l~~Le~L~L~~c~~L----~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 654 -SMATNLETLKLSDCSSL----VELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred -ccCCcccEEEecCCCCc----cccchhhhccCCCCEEeCCCCC
Confidence 12467888888877110 0001111244667777776653
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=7.2e-07 Score=87.86 Aligned_cols=209 Identities=18% Similarity=0.172 Sum_probs=137.0
Q ss_pred CCcccEEEEeeeeccccCC--CccccCCcceEEeeeEEeCc-chHHHHhhcCCccceeEeeeeeeccCCce-eEEEecCc
Q 010332 204 STTLEVLVLYSDFVINIPP--SGLCFPCLKFLHIEMYCLPN-NLTERLFSACPVLEELSIVGLLVNADVVT-NFNISSPT 279 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~~~~--~~~~~~~Lk~L~L~~~~~~~-~~l~~lls~cp~Le~L~L~~~c~~~~~~~-~l~i~~~~ 279 (513)
.+.|+...|.++.....+. ....||+++.|+|++.-+.. ..+-.++...|+||.|.| .....-.... ...-..+.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNl-s~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNL-SSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccc-ccccccCCccccchhhhhh
Confidence 5778888888887765321 34589999999999998888 778889999999999999 6543301111 11124578
Q ss_pred cceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccc---cceeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhH
Q 010332 280 LKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHAL---VSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKR 356 (513)
Q Consensus 280 Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~---~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 356 (513)
||.|.+..| .+. ......+....|+|+.|.+.++.. .......+..|++++++-.. ..+.+
T Consensus 199 lK~L~l~~C--Gls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-------------li~~~ 262 (505)
T KOG3207|consen 199 LKQLVLNSC--GLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-------------LIDFD 262 (505)
T ss_pred hheEEeccC--CCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-------------ccccc
Confidence 999999998 432 133456667889999999988742 11223345567777775332 11223
Q ss_pred HHHHccCCCcceEEEEEcchhhhhhhhccCC----CCCcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEecccCC
Q 010332 357 VLELLEGVNEIKFMSLSAETMFALDLAYEDF----FPTFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSHAVRD 431 (513)
Q Consensus 357 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~----~p~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~~~~~ 431 (513)
.......++.++.|.++.+.+.... +++.. ...|++|+.|.+..... +|..+-+ ++..++|+.|.+...+...
T Consensus 263 ~~~~~~~l~~L~~Lnls~tgi~si~-~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~-l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 263 QGYKVGTLPGLNQLNLSSTGIASIA-EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH-LRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccccccccchhhhhccccCcchhc-CCCccchhhhcccccceeeecccCccccccccch-hhccchhhhhhcccccccc
Confidence 3345567788888888887776621 11111 34788899999876543 3444333 4567788888877766543
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.84 E-value=7.3e-06 Score=83.65 Aligned_cols=128 Identities=14% Similarity=0.139 Sum_probs=73.8
Q ss_pred cCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEe-cCcc
Q 010332 202 CTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNIS-SPTL 280 (513)
Q Consensus 202 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~-~~~L 280 (513)
+..++|+.++|..+.+..+|.......+|+.|+|.+..+..=.- +-++..|.||.|+| ....+ ..++.-..+ ..++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~s-e~L~~l~alrslDL-SrN~i-s~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTS-EELSALPALRSLDL-SRNLI-SEIPKPSFPAKVNI 175 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccH-HHHHhHhhhhhhhh-hhchh-hcccCCCCCCCCCc
Confidence 45678888888888887764333445668888888887775111 22667788888888 54332 222222222 2568
Q ss_pred ceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccc---eeeccCCCeeEEEEEE
Q 010332 281 KKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVS---YMVHELHSLTEAFIDV 336 (513)
Q Consensus 281 r~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~ 336 (513)
++|.+.++ . ........+. ...+|..|+++.+.... ..+.++|+|+.+++..
T Consensus 176 ~~L~La~N--~-It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 176 KKLNLASN--R-ITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred eEEeeccc--c-cccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 88887765 1 1111111111 11267777777654432 2455677777776643
No 18
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=3.4e-07 Score=85.84 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=21.3
Q ss_pred CcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 229 CLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 229 ~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
+|+.|+|+...++...+..+++.|..|+.|.| +...
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSl-Eg~~ 221 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSL-EGLR 221 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccc-cccc
Confidence 45556666555555566666666666666666 5443
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.63 E-value=1.6e-06 Score=85.03 Aligned_cols=230 Identities=13% Similarity=0.095 Sum_probs=143.8
Q ss_pred cccEEEEeeeeccccCC---CccccCCcceEEeeeEE-eCcchHHHHhhcCCccceeEeeeeeec--cCCceeEEEecCc
Q 010332 206 TLEVLVLYSDFVINIPP---SGLCFPCLKFLHIEMYC-LPNNLTERLFSACPVLEELSIVGLLVN--ADVVTNFNISSPT 279 (513)
Q Consensus 206 ~L~~L~L~~~~l~~~~~---~~~~~~~Lk~L~L~~~~-~~~~~l~~lls~cp~Le~L~L~~~c~~--~~~~~~l~i~~~~ 279 (513)
.|+.|+|+||.-....+ ....||+++.|.+.++. +++..+..+-..|+.|+.|.+ ..|.. +..++.+.-.+++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L-~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNL-HSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhh-cccchhHHHHHHHHHHhhhh
Confidence 46777777775433211 23479999999999886 566889999999999999999 99864 1123334455899
Q ss_pred cceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccce---ee--ccCCCeeEEEEEEEeecCCCCCccCCCCchh
Q 010332 280 LKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY---MV--HELHSLTEAFIDVSYFEWPSPSYVERPLPQA 354 (513)
Q Consensus 280 Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~---~~--~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~ 354 (513)
|+.|.++.| ......+...+.-.+.+|+.|...||..... .. ...+.+.+.++..+. ..++
T Consensus 218 L~~lNlSwc--~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~------------~lTD 283 (483)
T KOG4341|consen 218 LKYLNLSWC--PQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCN------------QLTD 283 (483)
T ss_pred HHHhhhccC--chhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhc------------cccc
Confidence 999999998 6555556666777888888888888743211 11 123333333322222 0345
Q ss_pred hHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEecccCCCC
Q 010332 355 KRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSHAVRDSG 433 (513)
Q Consensus 355 ~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~~~~~~~ 433 (513)
..+..+-.++..++.|..++..-.....+... ....++|+.|.+..|.. +..++..+-++||.||.|.++.+....+.
T Consensus 284 ~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL-g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 284 EDLWLIACGCHALQVLCYSSCTDITDEVLWAL-GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred hHHHHHhhhhhHhhhhcccCCCCCchHHHHHH-hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 55666666777777777766443221111111 22568888888888865 44577777788999999888876543222
Q ss_pred CccccCccccccccccEEEEE
Q 010332 434 FIFEEPVPRCLLFHVKKIEMR 454 (513)
Q Consensus 434 ~~w~~~~~~c~~~~Lk~v~i~ 454 (513)
-..+....| ..|+++.+.
T Consensus 363 -tL~sls~~C--~~lr~lsls 380 (483)
T KOG4341|consen 363 -TLASLSRNC--PRLRVLSLS 380 (483)
T ss_pred -hHhhhccCC--chhccCChh
Confidence 112223344 556665554
No 20
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=8.7e-05 Score=70.03 Aligned_cols=251 Identities=16% Similarity=0.168 Sum_probs=145.7
Q ss_pred CCcCCCcccEEEEeeeeccccC---CCccccCCcceEEeeeEEeCc-chHHHHhhcCCccceeEeeeeeeccCCceeEEE
Q 010332 200 SLCTSTTLEVLVLYSDFVINIP---PSGLCFPCLKFLHIEMYCLPN-NLTERLFSACPVLEELSIVGLLVNADVVTNFNI 275 (513)
Q Consensus 200 ~l~~~~~L~~L~L~~~~l~~~~---~~~~~~~~Lk~L~L~~~~~~~-~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i 275 (513)
.++....++.|.|.+|.+...- .....+.+++.|+|.+..+++ ..+..++.+.|.|+.|.| .+......+..+..
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNl-s~N~L~s~I~~lp~ 118 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNL-SCNSLSSDIKSLPL 118 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeec-cCCcCCCccccCcc
Confidence 3344456677888888775421 112368899999999999999 889999999999999999 65444344555555
Q ss_pred ecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeec-----c-CCCeeEEEEEEEeecCCCCCccCC
Q 010332 276 SSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVH-----E-LHSLTEAFIDVSYFEWPSPSYVER 349 (513)
Q Consensus 276 ~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~-----~-~p~L~~~~l~~~~~~~~~~~~~~~ 349 (513)
...+|+.|.+.+. .... .......-+.|+++.|+++.+....+-+. . -+.+..+...- .
T Consensus 119 p~~nl~~lVLNgT--~L~w-~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~------------c 183 (418)
T KOG2982|consen 119 PLKNLRVLVLNGT--GLSW-TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLP------------C 183 (418)
T ss_pred cccceEEEEEcCC--CCCh-hhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCC------------c
Confidence 5568888888775 1110 22333444667888887776532211100 0 00111111100 0
Q ss_pred CCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEecc
Q 010332 350 PLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSHA 428 (513)
Q Consensus 350 ~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~~ 428 (513)
+...-....++..-++++..+.++.++++..+ ...+.-.|+.+--|.|..... +|.++ .-|..+|.|..|.+...+
T Consensus 184 ~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s--~ek~se~~p~~~~LnL~~~~idswasv-D~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 184 LEQLWLNKNKLSRIFPNVNSVFVCEGPLKTES--SEKGSEPFPSLSCLNLGANNIDSWASV-DALNGFPQLVDLRVSENP 260 (418)
T ss_pred HHHHHHHHHhHHhhcccchheeeecCcccchh--hcccCCCCCcchhhhhcccccccHHHH-HHHcCCchhheeeccCCc
Confidence 00122345677778899999999999888732 222222333333455544432 44444 347889999999988766
Q ss_pred cCCCCCccccCccccccccccEEEEE---EecC---cHHHHHHHHHHHh
Q 010332 429 VRDSGFIFEEPVPRCLLFHVKKIEMR---SFGG---YEHEFQLVKYFLK 471 (513)
Q Consensus 429 ~~~~~~~w~~~~~~c~~~~Lk~v~i~---~f~g---~~~e~~l~~~lL~ 471 (513)
..++-.. .+.- .-+...|..|++- .+.. ...|..|++|.++
T Consensus 261 l~d~l~~-~err-~llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 261 LSDPLRG-GERR-FLLIARLTKVQVLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred ccccccC-Ccce-EEEEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence 5432211 1110 1122445555554 1211 2457889999876
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=2.6e-05 Score=77.15 Aligned_cols=108 Identities=20% Similarity=0.217 Sum_probs=75.2
Q ss_pred CCcccEEEEeeeeccccCCC--ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEe---cC
Q 010332 204 STTLEVLVLYSDFVINIPPS--GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNIS---SP 278 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~~~~~--~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~---~~ 278 (513)
.++|+.|.|+.+.+...... ...+++||+|.|..|.++-.++..++..||.||.|.| ... ++...-..+ ..
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L-~~N---~~~~~~~~~~~i~~ 246 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYL-EAN---EIILIKATSTKILQ 246 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhh-hcc---cccceecchhhhhh
Confidence 58899999999988653221 2378999999999999999999999999999999999 654 112111111 24
Q ss_pred ccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccc
Q 010332 279 TLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHAL 318 (513)
Q Consensus 279 ~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~ 318 (513)
.|+.|++.++ .+. +.......-..|+|+.|.+..+..
T Consensus 247 ~L~~LdLs~N--~li-~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 247 TLQELDLSNN--NLI-DFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred HHhhccccCC--ccc-ccccccccccccchhhhhccccCc
Confidence 6888888876 321 112223334668888888776654
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.28 E-value=1e-05 Score=86.71 Aligned_cols=71 Identities=24% Similarity=0.263 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHhCCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEe
Q 010332 156 SLLKFWVSSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHI 235 (513)
Q Consensus 156 ~~~~~wl~~a~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L 235 (513)
..+..|+..++ +++.|.+. +.. ...+|..++...+|+.|++..|.+..+|+....+.+|++|+|
T Consensus 254 ~~lp~wi~~~~--nle~l~~n----------~N~----l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 254 SNLPEWIGACA--NLEALNAN----------HNR----LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred hcchHHHHhcc--cceEeccc----------chh----HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 45568998754 78888776 210 567888888889999999999999888776677999999999
Q ss_pred eeEEeCc
Q 010332 236 EMYCLPN 242 (513)
Q Consensus 236 ~~~~~~~ 242 (513)
....+.+
T Consensus 318 ~~N~L~~ 324 (1081)
T KOG0618|consen 318 QSNNLPS 324 (1081)
T ss_pred hhccccc
Confidence 9998865
No 23
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.22 E-value=9.3e-06 Score=85.55 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=35.0
Q ss_pred CcccCCCChHHHHHHhcCCchhhhhhhhhhhhhhHHhhccC
Q 010332 26 EDRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTWL 66 (513)
Q Consensus 26 ~D~is~LPd~iL~~Ils~Lp~kda~rts~lSrRWr~lw~~~ 66 (513)
.+.....|+.....+....+..+...+..++++|.......
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (482)
T KOG1947|consen 42 LRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGSL 82 (482)
T ss_pred eeeeeccccchhhhcccccccccccccchhhhhhhhhhhhh
Confidence 45667889999999999999999999999999999776553
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.00 E-value=6.8e-05 Score=67.09 Aligned_cols=57 Identities=26% Similarity=0.247 Sum_probs=20.1
Q ss_pred CCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchH-HHHhhcCCccceeEeeeee
Q 010332 204 STTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLT-ERLFSACPVLEELSIVGLL 264 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l-~~lls~cp~Le~L~L~~~c 264 (513)
+..|+.|+|++|.+..+ .....+++|++|+|++..+.. + +.+..+||.|++|.+ .+.
T Consensus 41 l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L-~~N 98 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYL-SNN 98 (175)
T ss_dssp -TT--EEE-TTS--S---TT----TT--EEE--SS---S---CHHHHHH-TT--EEE--TTS
T ss_pred hcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCc--cccchHHhCCcCCEEEC-cCC
Confidence 46677777777776664 344456777777777777654 2 123345777777777 543
No 25
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.90 E-value=0.0011 Score=38.94 Aligned_cols=25 Identities=40% Similarity=0.768 Sum_probs=22.9
Q ss_pred CcceEEeeeEEeCc-chHHHHhhcCC
Q 010332 229 CLKFLHIEMYCLPN-NLTERLFSACP 253 (513)
Q Consensus 229 ~Lk~L~L~~~~~~~-~~l~~lls~cp 253 (513)
+||+|+|..+.+.+ ..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 58999999999977 58999999998
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.86 E-value=0.00021 Score=63.97 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=43.3
Q ss_pred CCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCc-chHHHHhhcCCccceeEeeeeeeccCCcee-EEEecCcc
Q 010332 203 TSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPN-NLTERLFSACPVLEELSIVGLLVNADVVTN-FNISSPTL 280 (513)
Q Consensus 203 ~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~-~~l~~lls~cp~Le~L~L~~~c~~~~~~~~-l~i~~~~L 280 (513)
.+..++.|+|.++.++.+..-...+.+|+.|+|+++.+.. +. +..++.|++|.+ .+... ..+.. +.-..|+|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L-~~N~I-~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDL-SNNRI-SSISEGLDKNLPNL 90 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE---SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhccc-CCCCC-CccccchHHhCCcC
Confidence 4567899999999987753223358899999999999876 33 556899999999 66543 22211 11135899
Q ss_pred ceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEecccc------ceeeccCCCeeEEEEE
Q 010332 281 KKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALV------SYMVHELHSLTEAFID 335 (513)
Q Consensus 281 r~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~------~~~~~~~p~L~~~~l~ 335 (513)
+.|.+.++ ....-.....+ -..|+|++|.+.|++.. .+.+..+|+|+.++-.
T Consensus 91 ~~L~L~~N--~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNN--KISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS-----SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCC--cCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 99999775 21100111111 26799999999987542 2356789998887653
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.75 E-value=0.0019 Score=70.92 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=12.9
Q ss_pred HHHHHhcCCCcceEEEEeccc
Q 010332 409 LLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 409 l~~lL~~~P~Le~L~i~~~~~ 429 (513)
++.-+..+++|+.|+|..++.
T Consensus 437 LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 437 LPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cChHHhhccCCCeEECCCCCC
Confidence 444455667777777766553
No 28
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.74 E-value=3.2e-05 Score=79.61 Aligned_cols=161 Identities=14% Similarity=0.164 Sum_probs=93.7
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeE
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNF 273 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l 273 (513)
.-.+|..+|....|+.|+|+.+.+..+|..-..-.++-.|+|++..|.. --..++.+..-|-.|+| .+... +.+..-
T Consensus 92 nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDL-S~NrL-e~LPPQ 168 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDL-SNNRL-EMLPPQ 168 (1255)
T ss_pred cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhcc-ccchh-hhcCHH
Confidence 3467888888899999999998888764444456678888888887754 22345566677777777 55432 111111
Q ss_pred EEecCccceEEEEeecCCCCCCCCcceEEE----eCCceeEEEEEeccc----cceeeccCCCeeEEEEEEEeecCCCCC
Q 010332 274 NISSPTLKKLGIRFDIGDQGSSYNEHKILI----RAPNLERFHIIDHAL----VSYMVHELHSLTEAFIDVSYFEWPSPS 345 (513)
Q Consensus 274 ~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i----~ap~L~~L~l~~~~~----~~~~~~~~p~L~~~~l~~~~~~~~~~~ 345 (513)
.-.-..|+.|.++++ . ...+.+ +...|+.|++++... .+..+.++.+|.+++++...
T Consensus 169 ~RRL~~LqtL~Ls~N--P------L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~------- 233 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNN--P------LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN------- 233 (1255)
T ss_pred HHHHhhhhhhhcCCC--h------hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-------
Confidence 111235666777665 2 111111 233466666666432 12234556666666664332
Q ss_pred ccCCCCchhhHHHHHccCCCcceEEEEEcchhhhh
Q 010332 346 YVERPLPQAKRVLELLEGVNEIKFMSLSAETMFAL 380 (513)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~ 380 (513)
...+..-+-.+++++.|.|+++.+..+
T Consensus 234 --------Lp~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 234 --------LPIVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred --------CCcchHHHhhhhhhheeccCcCceeee
Confidence 223445555667777777777665543
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.71 E-value=0.0029 Score=69.52 Aligned_cols=102 Identities=25% Similarity=0.237 Sum_probs=63.3
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeE
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNF 273 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l 273 (513)
...+|..+. ..|+.|.|.++.+..+|. ..++|++|+|+++.+.. +. ...+.|++|.+ ..+.. ..+
T Consensus 213 LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~L-s~N~L----~~L 277 (788)
T PRK15387 213 LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LP---VLPPGLLELSI-FSNPL----THL 277 (788)
T ss_pred CCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--cc---Ccccccceeec-cCCch----hhh
Confidence 446777664 478899999988887643 35889999999887764 11 12367888888 66543 222
Q ss_pred EEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccc
Q 010332 274 NISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHAL 318 (513)
Q Consensus 274 ~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~ 318 (513)
.-.-.+|+.|.+.++ . ...+-...|+|++|.++++..
T Consensus 278 p~lp~~L~~L~Ls~N--~------Lt~LP~~p~~L~~LdLS~N~L 314 (788)
T PRK15387 278 PALPSGLCKLWIFGN--Q------LTSLPVLPPGLQELSVSDNQL 314 (788)
T ss_pred hhchhhcCEEECcCC--c------cccccccccccceeECCCCcc
Confidence 212245777777665 1 112222346788887777643
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.70 E-value=0.00069 Score=73.78 Aligned_cols=218 Identities=17% Similarity=0.165 Sum_probs=122.0
Q ss_pred CCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEeecCCCCCCCCcceEEEeCCc
Q 010332 228 PCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPN 307 (513)
Q Consensus 228 ~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~ 307 (513)
-+|++.+|....+....++.+...+ |++|.| .++.. .+.....- ...+|..- .....-.-.-.+
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~--L~sl~L-Gnl~~---~k~~~~~~---~~idi~~l-------L~~~Ln~~sr~n 123 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD--LESLKL-GNLDK---IKQDYLDD---ATIDIISL-------LKDLLNEESRQN 123 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc--ccccCC-cchHh---hhhhhhhh---hhccHHHH-------HHHHHhHHHHHh
Confidence 3566677777766666666433333 999999 77643 11110000 00000000 000000012345
Q ss_pred eeEEEEEeccc----ccee-eccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhh
Q 010332 308 LERFHIIDHAL----VSYM-VHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDL 382 (513)
Q Consensus 308 L~~L~l~~~~~----~~~~-~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~ 382 (513)
|++|.++|... +... -..+|+|+.+.+.... .....+.++..+++++..|+|++..+..+
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-------------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-- 188 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-------------FDNDDFSQLCASFPNLRSLDISGTNISNL-- 188 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecCce-------------ecchhHHHHhhccCccceeecCCCCccCc--
Confidence 66666666421 1111 2347777777775433 23445889999999999999999877652
Q ss_pred hccCCCCCcCcccEEEEEecc-CCHHHHHHHHhcCCCcceEEEEecccCCCCCccccCccccccccccEEEEEEecCcHH
Q 010332 383 AYEDFFPTFPNLTYLEVHIGG-TSWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEPVPRCLLFHVKKIEMRSFGGYEH 461 (513)
Q Consensus 383 ~~~~~~p~~~~Lk~L~l~~~~-~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~w~~~~~~c~~~~Lk~v~i~~f~g~~~ 461 (513)
.++..++||+.|.+..-. .++..+..+ -+..+|+.|+|...........-.+ ..+|. .-|-++++-...|+.-
T Consensus 189 ---~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~q-Ylec~-~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 189 ---SGISRLKNLQVLSMRNLEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQ-YLECG-MVLPELRFLDCSGTDI 262 (699)
T ss_pred ---HHHhccccHHHHhccCCCCCchhhHHHH-hcccCCCeeeccccccccchHHHHH-HHHhc-ccCccccEEecCCcch
Confidence 334567777777775533 344444444 3588999999998664332211111 12342 1244444445558877
Q ss_pred HHHHHHHHHhcccCcCcEEEE
Q 010332 462 EFQLVKYFLKNIVSLEKLIVK 482 (513)
Q Consensus 462 e~~l~~~lL~~a~~Le~~~i~ 482 (513)
.-+++.-+++.=|.|+++...
T Consensus 263 ~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 263 NEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred hHHHHHHHHHhCccHhhhhhh
Confidence 778888888888888888754
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.69 E-value=0.0006 Score=49.62 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=39.4
Q ss_pred CcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeee
Q 010332 205 TTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLL 264 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c 264 (513)
++|++|+|.+|.+..+++.. .++++|++|+|+++.+.. --...+.++|.|++|++ .+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l-~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDL-SNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEE-TSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeC-cCC
Confidence 35777888888777765533 467888888888777754 11134677888888888 654
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.67 E-value=0.00073 Score=74.32 Aligned_cols=59 Identities=10% Similarity=0.089 Sum_probs=34.7
Q ss_pred CcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccC-CH-HHHHHHHhcCCCcceEEEEeccc
Q 010332 365 NEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGT-SW-KLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 365 ~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~-~~-~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
++++.|+|+.+.+.. +.+ .+ ...|+.|++..+.. .. ..+..++..+|++..|.+...+.
T Consensus 367 ~~L~~LdLs~N~Lt~---LP~-~l--~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 367 PTITTLDVSRNALTN---LPE-NL--PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCcCEEECCCCcCCC---CCH-hH--HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 456667766655443 111 11 13466666666533 22 25677777788888888887654
No 33
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.64 E-value=7.5e-05 Score=78.63 Aligned_cols=113 Identities=21% Similarity=0.206 Sum_probs=77.6
Q ss_pred CcCCCcccEEEEeee-ecccc-----CCCccccCCcceEEeeeEE-eCcchHHHHhhcCCccceeEeeeeeec--cCCce
Q 010332 201 LCTSTTLEVLVLYSD-FVINI-----PPSGLCFPCLKFLHIEMYC-LPNNLTERLFSACPVLEELSIVGLLVN--ADVVT 271 (513)
Q Consensus 201 l~~~~~L~~L~L~~~-~l~~~-----~~~~~~~~~Lk~L~L~~~~-~~~~~l~~lls~cp~Le~L~L~~~c~~--~~~~~ 271 (513)
...|+.|+.|+++++ ..... ......+++|+.|+|.++. +++..+..+...||.||.|.+ ..|.. +.++.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l-~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSL-SNCSNLTDEGLV 288 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEcc-CCCCccchhHHH
Confidence 345788999998873 22111 0123467888999999888 777888888888999999998 88862 44566
Q ss_pred eEEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEec
Q 010332 272 NFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDH 316 (513)
Q Consensus 272 ~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~ 316 (513)
.+.-.+++|+.|.+..| ....+.....+...+|+|+.|.+.+.
T Consensus 289 ~i~~~~~~L~~L~l~~c--~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGC--HGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHHhcCcccEEeeecC--ccchHHHHHHHHHhCcchhhhhhhhc
Confidence 66666788999999887 33233334444556788777776554
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.50 E-value=0.0011 Score=62.87 Aligned_cols=144 Identities=16% Similarity=0.164 Sum_probs=87.3
Q ss_pred eCCceeEEEEEeccccce-eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhh
Q 010332 304 RAPNLERFHIIDHALVSY-MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDL 382 (513)
Q Consensus 304 ~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~ 382 (513)
-+|+++.|.++.+....+ .+..+++|+.++++... ...+.++-..+-|++.|.++.+.++.++.
T Consensus 305 L~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~---------------Ls~~~Gwh~KLGNIKtL~La~N~iE~LSG 369 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL---------------LAECVGWHLKLGNIKTLKLAQNKIETLSG 369 (490)
T ss_pred hccceeEEeccccceeeehhhhhcccceEeecccch---------------hHhhhhhHhhhcCEeeeehhhhhHhhhhh
Confidence 568888888877654222 35678888888776433 34555666777888999998888776442
Q ss_pred hccCCCCCcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEecccCCCCCccccCccccccccccEEEEEEecCcHH
Q 010332 383 AYEDFFPTFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEPVPRCLLFHVKKIEMRSFGGYEH 461 (513)
Q Consensus 383 ~~~~~~p~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~w~~~~~~c~~~~Lk~v~i~~f~g~~~ 461 (513)
+..+.+|..|++..+.. +.+. ..-+.+.|+||+|.+..++......|-..... -+-..-.+|.+.+-.+...
T Consensus 370 -----L~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa-~FGERaSE~~LD~~~~~~~ 442 (490)
T KOG1259|consen 370 -----LRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSVDYRTKVLA-RFGERASEISLDNEPGNQQ 442 (490)
T ss_pred -----hHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccchHHHHHHH-HHhhhhhheecCCCCcchh
Confidence 23555677777766533 2233 33357899999999988765432221111000 0113334566666677777
Q ss_pred HHHHHHHH
Q 010332 462 EFQLVKYF 469 (513)
Q Consensus 462 e~~l~~~l 469 (513)
|+.-+.-+
T Consensus 443 ELDTV~Vl 450 (490)
T KOG1259|consen 443 ELDTVLVL 450 (490)
T ss_pred hhhHHHHH
Confidence 76655443
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.49 E-value=0.00076 Score=65.22 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=29.2
Q ss_pred CCcccEEEEeeeeccccC-----CCccccCCcceEEeeeEEeCc---------chHHHHhhcCCccceeEe
Q 010332 204 STTLEVLVLYSDFVINIP-----PSGLCFPCLKFLHIEMYCLPN---------NLTERLFSACPVLEELSI 260 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~~~-----~~~~~~~~Lk~L~L~~~~~~~---------~~l~~lls~cp~Le~L~L 260 (513)
..+++.|+|+|+.+..-. +.-.+-+.|+.-+++++.... ..+...+.+||.|+.|+|
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 456677777777664210 011133455555555543321 223344556777777777
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.38 E-value=0.0031 Score=69.42 Aligned_cols=106 Identities=11% Similarity=0.176 Sum_probs=63.1
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeE
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNF 273 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l 273 (513)
...+|..+ .+.|+.|+|+++.+..+|.. .+++|++|+|.++.+.. +..- -.+.|+.|.| .+|.. ..+..
T Consensus 190 LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~--l~~nL~~L~Ls~N~Lts--LP~~--l~~~L~~L~L-s~N~L-~~LP~- 258 (754)
T PRK15370 190 LTTIPACI--PEQITTLILDNNELKSLPEN--LQGNIKTLYANSNQLTS--IPAT--LPDTIQEMEL-SINRI-TELPE- 258 (754)
T ss_pred cCcCCccc--ccCCcEEEecCCCCCcCChh--hccCCCEEECCCCcccc--CChh--hhccccEEEC-cCCcc-CcCCh-
Confidence 34566544 25789999999988876432 24689999999887764 1111 1247888888 77754 21111
Q ss_pred EEecCccceEEEEeecCCCCCCCCcceEEE-eCCceeEEEEEecccc
Q 010332 274 NISSPTLKKLGIRFDIGDQGSSYNEHKILI-RAPNLERFHIIDHALV 319 (513)
Q Consensus 274 ~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i-~ap~L~~L~l~~~~~~ 319 (513)
.+ ..+|+.|.++++ .. ..+-- -.++|++|.++++...
T Consensus 259 ~l-~s~L~~L~Ls~N--~L------~~LP~~l~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 259 RL-PSALQSLDLFHN--KI------SCLPENLPEELRYLSVYDNSIR 296 (754)
T ss_pred hH-hCCCCEEECcCC--cc------CccccccCCCCcEEECCCCccc
Confidence 01 236888888755 21 11111 1247888888776543
No 37
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.12 E-value=0.0023 Score=69.72 Aligned_cols=60 Identities=25% Similarity=0.229 Sum_probs=45.9
Q ss_pred CcccEEEEeeeecc-ccCC--CccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 205 TTLEVLVLYSDFVI-NIPP--SGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 205 ~~L~~L~L~~~~l~-~~~~--~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
.+|++|++.|...- .-++ .+.-||+|++|.+.+..+..+++..+..++|+|..|+| .++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDI-S~Tn 184 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDI-SGTN 184 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeec-CCCC
Confidence 56888888775432 1112 23469999999999999988889999999999999999 7664
No 38
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.93 E-value=0.00019 Score=74.21 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=37.8
Q ss_pred CcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecccCC---CCCcccc------------Ccc--ccccccccEEE
Q 010332 390 TFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRD---SGFIFEE------------PVP--RCLLFHVKKIE 452 (513)
Q Consensus 390 ~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~---~~~~w~~------------~~~--~c~~~~Lk~v~ 452 (513)
.+.||+.++++. ++...++.-+-..++|+.|.+.+...++ ..+.|+. ..| -|.+..|+++.
T Consensus 220 ~l~NL~dvDlS~--N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 220 DLHNLRDVDLSE--NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLY 297 (1255)
T ss_pred hhhhhhhccccc--cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHH
Confidence 455555444422 3455667777788999999998876432 2335632 023 45567777666
Q ss_pred EE
Q 010332 453 MR 454 (513)
Q Consensus 453 i~ 454 (513)
..
T Consensus 298 ~n 299 (1255)
T KOG0444|consen 298 AN 299 (1255)
T ss_pred hc
Confidence 54
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.23 E-value=0.0078 Score=40.47 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=21.4
Q ss_pred cccEEEEeeeeccccCCCccccCCcceEEeeeEEeCc
Q 010332 206 TLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPN 242 (513)
Q Consensus 206 ~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~ 242 (513)
+|++|+|.++.+..+++....+++|+.|+|+++.+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4666777777666654334566666666666665543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.17 E-value=0.013 Score=42.55 Aligned_cols=46 Identities=26% Similarity=0.433 Sum_probs=37.3
Q ss_pred ccccCCCCcC-CCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEE
Q 010332 194 PVELPESLCT-STTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYC 239 (513)
Q Consensus 194 ~~~lp~~l~~-~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~ 239 (513)
...+|...|. +++|++|+++++.+..+++.. .++++|+.|+|+++.
T Consensus 13 l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 13 LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4577766555 799999999999998876644 689999999998764
No 41
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.85 E-value=0.02 Score=53.84 Aligned_cols=179 Identities=18% Similarity=0.072 Sum_probs=105.1
Q ss_pred CccccCCcceEEeeeEEeCc---chHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEeecCCCCCCCCcc
Q 010332 223 SGLCFPCLKFLHIEMYCLPN---NLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEH 299 (513)
Q Consensus 223 ~~~~~~~Lk~L~L~~~~~~~---~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~ 299 (513)
.-..||+|.+.+|+.+.|.. ..+..++++-..|++|.+ .+|.. |.....--+..|.+|.. .
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l-~NnGl--Gp~aG~rigkal~~la~-------------n 150 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKL-NNNGL--GPIAGGRIGKALFHLAY-------------N 150 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEe-ecCCC--CccchhHHHHHHHHHHH-------------H
Confidence 34578899999999888865 677888999999999999 88854 11110000111211111 1
Q ss_pred eEEEeCCceeEEEEEeccccce-------eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHH--HHccCCCcceEE
Q 010332 300 KILIRAPNLERFHIIDHALVSY-------MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVL--ELLEGVNEIKFM 370 (513)
Q Consensus 300 ~i~i~ap~L~~L~l~~~~~~~~-------~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~~l~~L 370 (513)
.=.-+.|.|+++....+..... .+..-..|..+.+..... + +.+.... --+..+.+++.|
T Consensus 151 KKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgI---------r--pegv~~L~~~gl~y~~~LevL 219 (388)
T COG5238 151 KKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGI---------R--PEGVTMLAFLGLFYSHSLEVL 219 (388)
T ss_pred hhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCc---------C--cchhHHHHHHHHHHhCcceee
Confidence 1123667788777765433211 112223455665543331 1 1222222 224567899999
Q ss_pred EEEcchhhhh-hhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhc-----CCCcceEEEEecc
Q 010332 371 SLSAETMFAL-DLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNS-----LPNLEVLLIHSHA 428 (513)
Q Consensus 371 ~l~~~~~~~~-~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~-----~P~Le~L~i~~~~ 428 (513)
+|..+++... |.+....++.+++|+.|.+..|-.+..+...+++. .|+|..|-.+...
T Consensus 220 DlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 220 DLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred eccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 9998766542 11122237789999999999997655555555553 6777777766543
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.82 E-value=0.013 Score=56.40 Aligned_cols=38 Identities=37% Similarity=0.565 Sum_probs=36.2
Q ss_pred CCcccCCCC----hHHHHHHhcCCchhhhhhhhhhhhhhHHh
Q 010332 25 SEDRISRLP----DPILCHILSFLPAKHAVATRILSSRWNLV 62 (513)
Q Consensus 25 ~~D~is~LP----d~iL~~Ils~Lp~kda~rts~lSrRWr~l 62 (513)
..|.|+.|| |+|-.+|||+|+..+.+.+-++||+|+++
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 679999999 99999999999999999999999999974
No 43
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.66 E-value=0.011 Score=58.24 Aligned_cols=49 Identities=16% Similarity=0.067 Sum_probs=38.2
Q ss_pred ccccCCCCcC-CCcccEEEEeeeeccccCCC-ccccCCcceEEeee-EEeCc
Q 010332 194 PVELPESLCT-STTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEM-YCLPN 242 (513)
Q Consensus 194 ~~~lp~~l~~-~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~-~~~~~ 242 (513)
--.+|...|. .++|++|+|+.+.+..+.|. +.++++|.+|.+.+ ..|.+
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 4577777666 68999999999998876554 45899998888887 66665
No 44
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.89 E-value=0.0027 Score=55.41 Aligned_cols=67 Identities=24% Similarity=0.256 Sum_probs=42.0
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEe
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSI 260 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L 260 (513)
.-++|.++.+.+.|+.|.++-+++..+|.++.+||.|+.|+|.+..+.+..+..=+-....|.-|.|
T Consensus 68 ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 68 IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 4567777777777777777777776665566677777777777776665333222222344555555
No 45
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.21 E-value=0.0019 Score=56.34 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=19.1
Q ss_pred ccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEee
Q 010332 196 ELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIE 236 (513)
Q Consensus 196 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~ 236 (513)
..|+.+....+|+.|.+.++.+..+|++..++|.|+.|++.
T Consensus 47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg 87 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG 87 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc
Confidence 33444444444555555555444444444444555555444
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.97 E-value=0.026 Score=57.91 Aligned_cols=167 Identities=15% Similarity=0.171 Sum_probs=100.6
Q ss_pred CCcccEEEEeeeeccccCCCccccC-CcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccce
Q 010332 204 STTLEVLVLYSDFVINIPPSGLCFP-CLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKK 282 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~~~~~~~~~~-~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~ 282 (513)
...+..|.+.++.+..+++....++ +|+.|++.+..+.. +..-+..+|.|+.|.+ .++.. ..+.......+.|+.
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l-~~N~l-~~l~~~~~~~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDL-SFNDL-SDLPKLLSNLSNLNN 190 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhcccccccccc-CCchh-hhhhhhhhhhhhhhh
Confidence 3568888888888887755444453 89999888887753 2234778899999999 77755 333333335677888
Q ss_pred EEEEeecCCCCCCCCcceEEE--eCCc-eeEEEEEecc-cc-ceeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHH
Q 010332 283 LGIRFDIGDQGSSYNEHKILI--RAPN-LERFHIIDHA-LV-SYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRV 357 (513)
Q Consensus 283 L~i~~~~~~~~~~~~~~~i~i--~ap~-L~~L~l~~~~-~~-~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 357 (513)
|.+.+. ....+.. ..++ |++|.+.+.. .. ...+..+..+..+.+... ....+
T Consensus 191 L~ls~N--------~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n---------------~~~~~ 247 (394)
T COG4886 191 LDLSGN--------KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN---------------KLEDL 247 (394)
T ss_pred eeccCC--------ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc---------------eeeec
Confidence 888765 2222222 3444 8888877763 11 112233333333332111 11112
Q ss_pred HHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEec
Q 010332 358 LELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIG 402 (513)
Q Consensus 358 ~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~ 402 (513)
...+..+++++.|.++...+.. +.. +..+.+|+.|++...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~---i~~--~~~~~~l~~L~~s~n 287 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISS---ISS--LGSLTNLRELDLSGN 287 (394)
T ss_pred cchhccccccceeccccccccc---ccc--ccccCccCEEeccCc
Confidence 3556677778888888876654 222 557778888888664
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.87 E-value=0.13 Score=46.48 Aligned_cols=103 Identities=19% Similarity=0.138 Sum_probs=67.0
Q ss_pred HHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHH--HHhcCCCcceEEEEecccCCCCCcc
Q 010332 359 ELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLA--ILNSLPNLEVLLIHSHAVRDSGFIF 436 (513)
Q Consensus 359 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~--lL~~~P~Le~L~i~~~~~~~~~~~w 436 (513)
..+..++.+.+|.++.+-+.. +.+...+.+++|+.|.+... +..-+.. =|..||.|+.|++.+.+......|-
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~---I~p~L~~~~p~l~~L~LtnN--si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR 132 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITR---IDPDLDTFLPNLKTLILTNN--SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYR 132 (233)
T ss_pred ccCCCccccceEEecCCccee---eccchhhhccccceEEecCc--chhhhhhcchhccCCccceeeecCCchhcccCce
Confidence 345567788888888877765 55544557788888888654 3332322 2578999999999998765544432
Q ss_pred ccCccccccccccEEEEEEecCcHHHHHHHHH
Q 010332 437 EEPVPRCLLFHVKKIEMRSFGGYEHEFQLVKY 468 (513)
Q Consensus 437 ~~~~~~c~~~~Lk~v~i~~f~g~~~e~~l~~~ 468 (513)
.- .-|.+.+|+++.+.+.+-.+.+-+...|
T Consensus 133 ~y--vl~klp~l~~LDF~kVt~~ER~~A~~~f 162 (233)
T KOG1644|consen 133 LY--VLYKLPSLRTLDFQKVTRKEREEAEVFF 162 (233)
T ss_pred eE--EEEecCcceEeehhhhhHHHHHHHHHHh
Confidence 22 1245577777777766666555555555
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=0.095 Score=50.09 Aligned_cols=88 Identities=18% Similarity=0.298 Sum_probs=67.9
Q ss_pred CCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCC-CcCcccEEEEEeccC
Q 010332 326 LHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFP-TFPNLTYLEVHIGGT 404 (513)
Q Consensus 326 ~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p-~~~~Lk~L~l~~~~~ 404 (513)
+..++++++..... ..=..+..++..+|+++.|.|+.+.+.. .-..+| ...||+.|-|.....
T Consensus 70 ~~~v~elDL~~N~i------------SdWseI~~ile~lP~l~~LNls~N~L~s----~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 70 VTDVKELDLTGNLI------------SDWSEIGAILEQLPALTTLNLSCNSLSS----DIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhhcccchh------------ccHHHHHHHHhcCccceEeeccCCcCCC----ccccCcccccceEEEEEcCCCC
Confidence 45566666654331 2335678899999999999999877643 122355 789999999988888
Q ss_pred CHHHHHHHHhcCCCcceEEEEeccc
Q 010332 405 SWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 405 ~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
+|....+++...|.++.|++..+.+
T Consensus 134 ~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 134 SWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred Chhhhhhhhhcchhhhhhhhccchh
Confidence 9999999999999999999988753
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.91 E-value=0.28 Score=44.42 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=47.4
Q ss_pred CCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCc-chHHHHhhcCCccceeEeeeee
Q 010332 203 TSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPN-NLTERLFSACPVLEELSIVGLL 264 (513)
Q Consensus 203 ~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~-~~l~~lls~cp~Le~L~L~~~c 264 (513)
..+.|.+|.|+++.+..+.|.- ..+|+|++|.|.+..+.. ++++. +.+||.|++|.+ ...
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltl-l~N 123 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTL-LGN 123 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeee-cCC
Confidence 3678999999999988764533 468999999999988876 55553 688999999999 654
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=91.55 E-value=0.083 Score=35.45 Aligned_cols=36 Identities=19% Similarity=0.120 Sum_probs=28.3
Q ss_pred CCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeec
Q 010332 228 PCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVN 266 (513)
Q Consensus 228 ~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~ 266 (513)
++|+.|+|.++.+.+ +...++.||.|+.|++ .++..
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l-~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNL-SNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEE-TSSCC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEe-cCCCC
Confidence 579999999998875 5555899999999999 87754
No 51
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=91.53 E-value=0.027 Score=61.40 Aligned_cols=195 Identities=18% Similarity=0.208 Sum_probs=97.2
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeE
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNF 273 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l 273 (513)
-...|.++....+|+.|.|.++.+..+|.....+.+|..|+++...+.. +...+..|..++++.. .+.. .+..+
T Consensus 80 i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~-s~N~---~~~~l 153 (1081)
T KOG0618|consen 80 IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAA-SNNE---KIQRL 153 (1081)
T ss_pred HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhh-hcch---hhhhh
Confidence 3456655555677888888888777664455567788888888877754 3344666677777766 4321 11111
Q ss_pred EEecCccceEEEEeecCCCCCCCCcceEEEeCCceeE-EEEEeccccceeeccCCCeeEEEEEEEeecCCCCCccCCCCc
Q 010332 274 NISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLER-FHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLP 352 (513)
Q Consensus 274 ~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~-L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~ 352 (513)
... .+|.+.+... .....+.++--+|+. +.++........+.+++.|+.+.....
T Consensus 154 g~~--~ik~~~l~~n-------~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn--------------- 209 (1081)
T KOG0618|consen 154 GQT--SIKKLDLRLN-------VLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERN--------------- 209 (1081)
T ss_pred ccc--cchhhhhhhh-------hcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhc---------------
Confidence 111 1444444333 222334444444444 444444332222223333332221100
Q ss_pred hhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecc
Q 010332 353 QAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHA 428 (513)
Q Consensus 353 ~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~ 428 (513)
.+..+--.-++++.|+.+.+.+.. . ...|.-.+|+.+++.. ..+..++..+..|++|+.|.+....
T Consensus 210 ---~ls~l~~~g~~l~~L~a~~n~l~~---~--~~~p~p~nl~~~dis~--n~l~~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 210 ---QLSELEISGPSLTALYADHNPLTT---L--DVHPVPLNLQYLDISH--NNLSNLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred ---ccceEEecCcchheeeeccCccee---e--ccccccccceeeecch--hhhhcchHHHHhcccceEecccchh
Confidence 000111111334444444333221 1 1123446677676644 3445566777788888888876643
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.41 E-value=0.031 Score=52.30 Aligned_cols=110 Identities=17% Similarity=0.066 Sum_probs=66.9
Q ss_pred CCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCc-chHHHHhhcCCccceeEeeeeeeccCCceeEEEe--cCc
Q 010332 203 TSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPN-NLTERLFSACPVLEELSIVGLLVNADVVTNFNIS--SPT 279 (513)
Q Consensus 203 ~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~-~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~--~~~ 279 (513)
....|+.|++.++.+..+ .....+|+||+|.++...... ..+.-++..||+|.+|.+ ....+ ..+..+.-. -++
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l-s~Nki-~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL-SGNKI-KDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEee-cCCcc-ccccccchhhhhcc
Confidence 346778888888877653 333457899999999884443 567778888999999999 65443 223332221 136
Q ss_pred cceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEec
Q 010332 280 LKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDH 316 (513)
Q Consensus 280 Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~ 316 (513)
|+.|.+.+|.... .+..-..+..-.|+|++|.....
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 7777887772111 11111223335566666665443
No 53
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=90.91 E-value=0.11 Score=49.91 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=31.5
Q ss_pred CcccCCCChHHHHHHhcCC-----chhhhhhhhhhhhhhHHh
Q 010332 26 EDRISRLPDPILCHILSFL-----PAKHAVATRILSSRWNLV 62 (513)
Q Consensus 26 ~D~is~LPd~iL~~Ils~L-----p~kda~rts~lSrRWr~l 62 (513)
.+.|+.||||||..||... +.++..++|++||.|+..
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 4557899999999998754 579999999999999853
No 54
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=90.81 E-value=0.16 Score=50.85 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=33.2
Q ss_pred cCCCChHHHHHHhcCCc-hhhhhhhhhhhhhhHHhhcc
Q 010332 29 ISRLPDPILCHILSFLP-AKHAVATRILSSRWNLVWTW 65 (513)
Q Consensus 29 is~LPd~iL~~Ils~Lp-~kda~rts~lSrRWr~lw~~ 65 (513)
-++||+|+|..|..+|| .-|.+|.+.|||.||..-..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 57899999999999996 67999999999999987554
No 55
>PLN03150 hypothetical protein; Provisional
Probab=90.31 E-value=0.16 Score=55.42 Aligned_cols=80 Identities=11% Similarity=0.022 Sum_probs=55.4
Q ss_pred cccEEEEeeeeccccCC-CccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCC-ceeEEEecCccceE
Q 010332 206 TLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADV-VTNFNISSPTLKKL 283 (513)
Q Consensus 206 ~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~-~~~l~i~~~~Lr~L 283 (513)
.++.|+|.++.+.+..| ....+++|+.|+|+++.+.+ .+...+..++.|+.|+| .++.. .+ +...--..++|+.|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdL-s~N~l-sg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDL-SYNSF-NGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEEC-CCCCC-CCCCchHHhcCCCCCEE
Confidence 37788888888875433 34578999999999888764 34444788899999999 77754 22 11111234678889
Q ss_pred EEEee
Q 010332 284 GIRFD 288 (513)
Q Consensus 284 ~i~~~ 288 (513)
.+.++
T Consensus 496 ~Ls~N 500 (623)
T PLN03150 496 NLNGN 500 (623)
T ss_pred ECcCC
Confidence 88876
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.94 E-value=0.026 Score=53.32 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=31.0
Q ss_pred ccCCCcceEEEEEcchhhhhhhhccC-CCCCcCcccEEEEEeccC----CHHHHHHHHhcCCCcceEEE
Q 010332 361 LEGVNEIKFMSLSAETMFALDLAYED-FFPTFPNLTYLEVHIGGT----SWKLLLAILNSLPNLEVLLI 424 (513)
Q Consensus 361 l~~l~~l~~L~l~~~~~~~~~~~~~~-~~p~~~~Lk~L~l~~~~~----~~~~l~~lL~~~P~Le~L~i 424 (513)
+..|+++++|.|..+.+.. +... .+..+++|+.|-|..+.. .-.-=...|+..|||++|+=
T Consensus 59 l~rCtrLkElYLRkN~I~s---ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 59 LQRCTRLKELYLRKNCIES---LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HHHHHHHHHHHHHhccccc---HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 3345555555555544443 2111 133555666666655422 12233456777888887764
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=88.76 E-value=0.7 Score=47.04 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=35.5
Q ss_pred CcccEEEEeeeeccccCCCccccCCcceEEeeeEE-eCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceE
Q 010332 205 TTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYC-LPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKL 283 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~-~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L 283 (513)
.+|++|.+++|.-....|... .++|+.|.+.+|. +. .+ -+.|+.|.| ... ....+..--++|+.|
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~-----sL---P~sLe~L~L-~~n----~~~~L~~LPssLk~L 137 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEIS-----GL---PESVRSLEI-KGS----ATDSIKNVPNGLTSL 137 (426)
T ss_pred CCCcEEEccCCCCcccCCchh-hhhhhheEccCccccc-----cc---ccccceEEe-CCC----CCcccccCcchHhhe
Confidence 358888888764322112211 3578888888763 21 11 135777777 432 122222223456666
Q ss_pred EEE
Q 010332 284 GIR 286 (513)
Q Consensus 284 ~i~ 286 (513)
.+.
T Consensus 138 ~I~ 140 (426)
T PRK15386 138 SIN 140 (426)
T ss_pred ecc
Confidence 664
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=88.33 E-value=0.014 Score=62.03 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=19.3
Q ss_pred CCCCcCCCcccEEEEeeeeccc
Q 010332 198 PESLCTSTTLEVLVLYSDFVIN 219 (513)
Q Consensus 198 p~~l~~~~~L~~L~L~~~~l~~ 219 (513)
|-.+|...+|++|.|++|.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred CceeccccceeeEEecCcchhh
Confidence 8888999999999999997643
No 59
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=87.77 E-value=0.71 Score=44.35 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=93.2
Q ss_pred ccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEeecCCCCCCCCcceEEEeC
Q 010332 226 CFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRA 305 (513)
Q Consensus 226 ~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~a 305 (513)
.|.+|+++.+++|.- ..+..+...=|.|+.+.+ .+... .... +--|-=+..+.+.. . .+.....+...+
T Consensus 212 ~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v-~~s~~-~~~~---~l~pe~~~~D~~~~--E--~~t~~G~~~~~~ 280 (490)
T KOG1259|consen 212 AFRNLKTLKFSALST--ENIVDIELLKPTLQTICV-HNTTI-QDVP---SLLPETILADPSGS--E--PSTSNGSALVSA 280 (490)
T ss_pred Hhhhhheeeeeccch--hheeceeecCchhheeee-ecccc-cccc---cccchhhhcCccCC--C--CCccCCceEEec
Confidence 577888888877654 334445566688888887 65432 1111 11111111111111 0 011222333333
Q ss_pred ---CceeEEEEEeccccce--eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhh
Q 010332 306 ---PNLERFHIIDHALVSY--MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFAL 380 (513)
Q Consensus 306 ---p~L~~L~l~~~~~~~~--~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~ 380 (513)
..|+.++++++....+ +..-+|.++.++++... .. .+ +-++.++++.+|+++++.+..
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-------------i~--~v-~nLa~L~~L~~LDLS~N~Ls~- 343 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-------------IR--TV-QNLAELPQLQLLDLSGNLLAE- 343 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccc-------------ee--ee-hhhhhcccceEeecccchhHh-
Confidence 3488888888754322 34457778877775433 11 11 226778999999999987665
Q ss_pred hhhccCCCCCcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEeccc
Q 010332 381 DLAYEDFFPTFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 381 ~~~~~~~~p~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
+..... .+.|+|.|.|..+.. +..+ |+..=+|+.|++..+..
T Consensus 344 --~~Gwh~-KLGNIKtL~La~N~iE~LSG----L~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 344 --CVGWHL-KLGNIKTLKLAQNKIETLSG----LRKLYSLVNLDLSSNQI 386 (490)
T ss_pred --hhhhHh-hhcCEeeeehhhhhHhhhhh----hHhhhhheeccccccch
Confidence 222222 788999998866532 2223 34445678888877553
No 60
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=86.83 E-value=0.24 Score=55.81 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=57.7
Q ss_pred CCCcccEEEEeeee--ccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecC-
Q 010332 203 TSTTLEVLVLYSDF--VINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSP- 278 (513)
Q Consensus 203 ~~~~L~~L~L~~~~--l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~- 278 (513)
.|+.|++|-+.++. +...+.. ...+|.|+.|+|+++.-. ..+..-++.+-+|++|++ ..+. +..+...-.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L-~~t~----I~~LP~~l~~ 616 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDL-SDTG----ISHLPSGLGN 616 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccc-cCCC----ccccchHHHH
Confidence 35678888887775 4433222 346888888888874321 345555777788888888 6553 333333323
Q ss_pred --ccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEec
Q 010332 279 --TLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDH 316 (513)
Q Consensus 279 --~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~ 316 (513)
.|..|.+...... .....+....++|++|.+.+.
T Consensus 617 Lk~L~~Lnl~~~~~l----~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRL----ESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred HHhhheecccccccc----ccccchhhhcccccEEEeecc
Confidence 3444555443100 111222234677788777665
No 61
>PLN03150 hypothetical protein; Provisional
Probab=86.56 E-value=0.45 Score=51.97 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=24.3
Q ss_pred CcCCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEe
Q 010332 201 LCTSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSI 260 (513)
Q Consensus 201 l~~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L 260 (513)
+..+++|+.|+|+++.+.+..| ....+++|+.|+|+++.+.+ .+..-+.+++.|+.|+|
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRILNL 497 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-CCchHHhcCCCCCEEEC
Confidence 3334444444444444432112 22344444444444444432 12222344444444444
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.39 E-value=0.6 Score=44.24 Aligned_cols=203 Identities=12% Similarity=0.024 Sum_probs=107.0
Q ss_pred CCcccEEEEeeeeccccCC-----CccccCCcceEEeeeEEeCc---------chHHHHhhcCCccceeEeeeeeec---
Q 010332 204 STTLEVLVLYSDFVINIPP-----SGLCFPCLKFLHIEMYCLPN---------NLTERLFSACPVLEELSIVGLLVN--- 266 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~~~~-----~~~~~~~Lk~L~L~~~~~~~---------~~l~~lls~cp~Le~L~L~~~c~~--- 266 (513)
..+++.++|+|+.+..-.. ..++-.+|+..+++...... ..+-..+..||.|+..+| .+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L-SDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL-SDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec-cccccCcc
Confidence 4678899999998754110 11234566666666553321 223345678999999999 65443
Q ss_pred -cCCceeEEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCeeEEEEEEEeecCCCCC
Q 010332 267 -ADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPS 345 (513)
Q Consensus 267 -~~~~~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~ 345 (513)
..-+..+.-++..|++|.+.+| ..+...+ . --+..|..|.+. -...+-|.|+.+...-..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn--GlGp~aG-~---rigkal~~la~n------KKaa~kp~Le~vicgrNR------- 168 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN--GLGPIAG-G---RIGKALFHLAYN------KKAADKPKLEVVICGRNR------- 168 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC--CCCccch-h---HHHHHHHHHHHH------hhhccCCCceEEEeccch-------
Confidence 0111122223445666666655 2110000 0 000011111111 123456777766553221
Q ss_pred ccCCCCchhhHHHHHccCCCcceEEEEEcchhhhh--hhhccCCCCCcCcccEEEEEeccC---CHHHHHHHHhcCCCcc
Q 010332 346 YVERPLPQAKRVLELLEGVNEIKFMSLSAETMFAL--DLAYEDFFPTFPNLTYLEVHIGGT---SWKLLLAILNSLPNLE 420 (513)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~--~~~~~~~~p~~~~Lk~L~l~~~~~---~~~~l~~lL~~~P~Le 420 (513)
++. ....-....+++-.+++.+.+..+++..- .++...++.+.++|+.|+|..+.. .-..+...+...|.|+
T Consensus 169 -len--gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 169 -LEN--GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred -hcc--CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 111 01122334445446888888887765431 112223455788999999977643 3346677788889999
Q ss_pred eEEEEeccc
Q 010332 421 VLLIHSHAV 429 (513)
Q Consensus 421 ~L~i~~~~~ 429 (513)
.|.+..|-.
T Consensus 246 EL~lnDCll 254 (388)
T COG5238 246 ELRLNDCLL 254 (388)
T ss_pred hccccchhh
Confidence 998887643
No 63
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.63 E-value=0.23 Score=49.48 Aligned_cols=42 Identities=24% Similarity=0.418 Sum_probs=33.9
Q ss_pred CCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecccCC
Q 010332 388 FPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRD 431 (513)
Q Consensus 388 ~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~ 431 (513)
+..+.+|+.|++. .++.+.++-++++|.+|++|.|.+.++..
T Consensus 501 l~nm~nL~tLDL~--nNdlq~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQ--NNDLQQIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hhhhhhcceeccC--CCchhhCChhhccccceeEEEecCCccCC
Confidence 4467777777773 35778999999999999999999988753
No 64
>PF13013 F-box-like_2: F-box-like domain
Probab=83.32 E-value=0.9 Score=37.04 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=27.1
Q ss_pred ccCCCChHHHHHHhcCCchhhhhhhhhhhh
Q 010332 28 RISRLPDPILCHILSFLPAKHAVATRILSS 57 (513)
Q Consensus 28 ~is~LPd~iL~~Ils~Lp~kda~rts~lSr 57 (513)
.|.+||+||+..|+.+-...+...++..++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478999999999999999999988887777
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.13 E-value=0.11 Score=49.25 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=39.2
Q ss_pred CCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCc-chHHHHhhcCCccceeEeeeeee
Q 010332 204 STTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPN-NLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~-~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
.+.|++|.|+-+.+..+ .....|.+|+.|.|..+.|.+ +.+. -+.+.|+|..|.| ....
T Consensus 40 Mp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~-YLknlpsLr~LWL-~ENP 99 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELE-YLKNLPSLRTLWL-DENP 99 (388)
T ss_pred cccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHH-HHhcCchhhhHhh-ccCC
Confidence 35677777777776654 334567788888888777765 3333 3567788888887 6543
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=80.89 E-value=0.81 Score=48.72 Aligned_cols=42 Identities=33% Similarity=0.541 Sum_probs=38.3
Q ss_pred CCCCCCcccCCCChHHHHHHhcCCchhhhhhhhhhhhhhHHh
Q 010332 21 GKHDSEDRISRLPDPILCHILSFLPAKHAVATRILSSRWNLV 62 (513)
Q Consensus 21 ~~~~~~D~is~LPd~iL~~Ils~Lp~kda~rts~lSrRWr~l 62 (513)
+.....|.|+.||-++..+||++|+.++.+..+.+|+.|+.+
T Consensus 100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 445678999999999999999999999999999999999865
No 67
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.47 E-value=0.14 Score=50.90 Aligned_cols=113 Identities=17% Similarity=0.099 Sum_probs=57.1
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchH-HHHhhcCCccceeEeeeeeeccCCcee
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLT-ERLFSACPVLEELSIVGLLVNADVVTN 272 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l-~~lls~cp~Le~L~L~~~c~~~~~~~~ 272 (513)
-..+|..+...++|..|+|..+.+.-+ |.+.+|..|+.|++....+. .+ .++.++.++|..|++ .+... ..+.+
T Consensus 195 L~tlP~~lg~l~~L~~LyL~~Nki~~l-Pef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~vLDL-RdNkl-ke~Pd 269 (565)
T KOG0472|consen 195 LETLPPELGGLESLELLYLRRNKIRFL-PEFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLVLDL-RDNKL-KEVPD 269 (565)
T ss_pred hhcCChhhcchhhhHHHHhhhcccccC-CCCCccHHHHHHHhcccHHH--hhHHHHhcccccceeeec-ccccc-ccCch
Confidence 346666666666666677766666554 45556666666666655442 22 223445666666666 44322 11111
Q ss_pred EEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEecc
Q 010332 273 FNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHA 317 (513)
Q Consensus 273 l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~ 317 (513)
-.+--.+|.+|++++. . -..-....+.-.|+.|.+.|++
T Consensus 270 e~clLrsL~rLDlSNN--~----is~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNN--D----ISSLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred HHHHhhhhhhhcccCC--c----cccCCcccccceeeehhhcCCc
Confidence 1111234566666654 1 1112223333356666666654
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.63 E-value=0.4 Score=45.08 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=15.5
Q ss_pred CcceEEEeCCceeEEEEEecccc
Q 010332 297 NEHKILIRAPNLERFHIIDHALV 319 (513)
Q Consensus 297 ~~~~i~i~ap~L~~L~l~~~~~~ 319 (513)
+.......+|+|+++.++|+...
T Consensus 82 ~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 82 GLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cceehhhhCCceeEEeecCCccc
Confidence 44455566688888888887543
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=77.08 E-value=0.65 Score=47.59 Aligned_cols=156 Identities=16% Similarity=0.209 Sum_probs=92.8
Q ss_pred ccccCCCCcCCC-cccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCcee
Q 010332 194 PVELPESLCTST-TLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTN 272 (513)
Q Consensus 194 ~~~lp~~l~~~~-~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~ 272 (513)
...+|....... .|+.|++.++.+..++.....++.|+.|++.++.+.+ +.......+.|+.|.+ ... .+..
T Consensus 128 i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~l-s~N----~i~~ 200 (394)
T COG4886 128 ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDL-SGN----KISD 200 (394)
T ss_pred cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheec-cCC----cccc
Confidence 457777666664 8999999999988764355689999999999998864 3333447899999999 664 3444
Q ss_pred EEEe--cC-ccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccc--eeeccCCCeeEEEEEEEeecCCCCCcc
Q 010332 273 FNIS--SP-TLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVS--YMVHELHSLTEAFIDVSYFEWPSPSYV 347 (513)
Q Consensus 273 l~i~--~~-~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~--~~~~~~p~L~~~~l~~~~~~~~~~~~~ 347 (513)
+... -+ .|+.|.+... .. .......-...++..+.+.+..... -.+..++.++.+++....
T Consensus 201 l~~~~~~~~~L~~l~~~~N--~~---~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~--------- 266 (394)
T COG4886 201 LPPEIELLSALEELDLSNN--SI---IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ--------- 266 (394)
T ss_pred CchhhhhhhhhhhhhhcCC--cc---eecchhhhhcccccccccCCceeeeccchhccccccceecccccc---------
Confidence 4442 23 3777777654 10 0011111133444444433332222 334556666666664332
Q ss_pred CCCCchhhHHHHHccCCCcceEEEEEcchh
Q 010332 348 ERPLPQAKRVLELLEGVNEIKFMSLSAETM 377 (513)
Q Consensus 348 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 377 (513)
...+.. +..+.+++.|++++..+
T Consensus 267 ------i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 267 ------ISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ------cccccc-ccccCccCEEeccCccc
Confidence 111222 66677888888877544
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=73.37 E-value=2.1 Score=22.14 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=6.6
Q ss_pred cccEEEEeeeeccc
Q 010332 206 TLEVLVLYSDFVIN 219 (513)
Q Consensus 206 ~L~~L~L~~~~l~~ 219 (513)
+|+.|+|++|.+..
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45666666666544
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.74 E-value=1.8 Score=24.51 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=9.6
Q ss_pred CCcceEEeeeEEeCcchHH
Q 010332 228 PCLKFLHIEMYCLPNNLTE 246 (513)
Q Consensus 228 ~~Lk~L~L~~~~~~~~~l~ 246 (513)
++|++|+|+++.+++..+.
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 5566666666666554443
No 72
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=69.42 E-value=2.3 Score=24.61 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=5.2
Q ss_pred CCcceEEeeeE
Q 010332 228 PCLKFLHIEMY 238 (513)
Q Consensus 228 ~~Lk~L~L~~~ 238 (513)
|+|+.|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44444444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=69.19 E-value=2.8 Score=23.22 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=11.9
Q ss_pred cccEEEEeeeeccccCC
Q 010332 206 TLEVLVLYSDFVINIPP 222 (513)
Q Consensus 206 ~L~~L~L~~~~l~~~~~ 222 (513)
+|++|+|++|.+..+|+
T Consensus 1 ~L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPS 17 (22)
T ss_dssp TESEEEETSSEESEEGT
T ss_pred CccEEECCCCcCEeCCh
Confidence 47788888887776533
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=68.76 E-value=6.1 Score=40.42 Aligned_cols=50 Identities=24% Similarity=0.274 Sum_probs=29.4
Q ss_pred hCCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEeee-eccccCCCccccCCcceEEeee
Q 010332 167 MRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSD-FVINIPPSGLCFPCLKFLHIEM 237 (513)
Q Consensus 167 ~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~-~l~~~~~~~~~~~~Lk~L~L~~ 237 (513)
..++++|.+. .+.. ...+|..+ ..+|++|++++| .+..+| ++|+.|.+.+
T Consensus 71 P~sLtsL~Ls----------nc~n---LtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~~ 121 (426)
T PRK15386 71 PNELTEITIE----------NCNN---LTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIKG 121 (426)
T ss_pred CCCCcEEEcc----------CCCC---cccCCchh--hhhhhheEccCcccccccc------cccceEEeCC
Confidence 3467888775 2111 33445433 357899999988 454432 3577777654
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.46 E-value=3 Score=37.93 Aligned_cols=40 Identities=13% Similarity=-0.013 Sum_probs=23.0
Q ss_pred CcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEeccc
Q 010332 390 TFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 390 ~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
.+..++.|.+..|.+ +..++..+-.-+|+||.|+|.+|+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~r 163 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPR 163 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCe
Confidence 445555566666655 3334444445677777777776654
No 76
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=60.74 E-value=3.5 Score=46.76 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=44.9
Q ss_pred ccCCCCcC-CCcccEEEEeeee-ccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeE
Q 010332 196 ELPESLCT-STTLEVLVLYSDF-VINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNF 273 (513)
Q Consensus 196 ~lp~~l~~-~~~L~~L~L~~~~-l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l 273 (513)
.++..+|. .+.|++|+|++|. +..+|.....+-+|+.|+|+++.+.. +..=+.....|.+|++ ........+..+
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl-~~~~~l~~~~~i 637 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNL-EVTGRLESIPGI 637 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhheecc-ccccccccccch
Confidence 34444444 4667777777653 33342233457777777777776653 2222444456667776 544220111111
Q ss_pred EEecCccceEEEEee
Q 010332 274 NISSPTLKKLGIRFD 288 (513)
Q Consensus 274 ~i~~~~Lr~L~i~~~ 288 (513)
.-.-++||.|.+...
T Consensus 638 ~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRS 652 (889)
T ss_pred hhhcccccEEEeecc
Confidence 111245666666544
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.38 E-value=1.3 Score=40.15 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=21.7
Q ss_pred ccCCcceEEeeeEEe-CcchHHHHhhcCCccceeEeeeeee
Q 010332 226 CFPCLKFLHIEMYCL-PNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 226 ~~~~Lk~L~L~~~~~-~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
++++++.|.|.+|.. .+..++.|-.-.|+||+|+| ..|+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~l-sgC~ 162 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDL-SGCP 162 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeec-cCCC
Confidence 455556666666543 33555555555566666666 5554
No 78
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=58.96 E-value=3.5 Score=42.60 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=46.2
Q ss_pred cCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCc-chHHHHhhcCCccceeEeeeeeeccCCceeEEEecCcc
Q 010332 202 CTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPN-NLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTL 280 (513)
Q Consensus 202 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~-~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~L 280 (513)
..+.+|+.|.|..+.+..+.....++++|+.|+|++..+.+ ..+ ..++.|+.|.+ ..+.+ ..+..+.. .+.|
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l-~~N~i-~~~~~~~~-l~~L 164 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNL-SGNLI-SDISGLES-LKSL 164 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhhee-ccCcc-hhccCCcc-chhh
Confidence 34577778888877776642214567788888888777765 333 34455777777 65543 11111111 3445
Q ss_pred ceEEEEee
Q 010332 281 KKLGIRFD 288 (513)
Q Consensus 281 r~L~i~~~ 288 (513)
+.+.+..+
T Consensus 165 ~~l~l~~n 172 (414)
T KOG0531|consen 165 KLLDLSYN 172 (414)
T ss_pred hcccCCcc
Confidence 55555544
No 79
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=52.81 E-value=15 Score=25.23 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=27.2
Q ss_pred CcccEEEEEec-c--CCHHHHHHHHhcCCCcceEEEE
Q 010332 392 PNLTYLEVHIG-G--TSWKLLLAILNSLPNLEVLLIH 425 (513)
Q Consensus 392 ~~Lk~L~l~~~-~--~~~~~l~~lL~~~P~Le~L~i~ 425 (513)
++|+.+.+... + .....+..+|++++.|+++.|.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 77888888643 2 2556889999999999999986
No 80
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=45.51 E-value=4.6 Score=34.55 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=33.2
Q ss_pred CcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeee
Q 010332 205 TTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLL 264 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c 264 (513)
..|+..+|+++.+.++|+.. .-||.+++|+|.+..+.+--.+ ++..|.|+.|++ ...
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl-~~N 110 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNL-RFN 110 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhccc-ccC
Confidence 34555566666666664433 3466777777777666542122 566677777777 443
No 81
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=44.85 E-value=0.54 Score=49.05 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=20.5
Q ss_pred ccCCCcceEEEEEcchhhhhhh-hccCCCCCcCcccEEEEEec
Q 010332 361 LEGVNEIKFMSLSAETMFALDL-AYEDFFPTFPNLTYLEVHIG 402 (513)
Q Consensus 361 l~~l~~l~~L~l~~~~~~~~~~-~~~~~~p~~~~Lk~L~l~~~ 402 (513)
+..+++++.|.|..++++...+ ++..+ ...-.|+|+...|
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAqIC~kG--kVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQICEKG--KVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHHHHhcc--ceeeeeeecchhc
Confidence 3455677777777776665221 12111 2333455666555
No 82
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=43.70 E-value=6.7 Score=37.07 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=39.7
Q ss_pred CcccCCCChHHHHHHhcCCc-hhhhhhhhhhhhh------hHHhhccCcceEeecCCC
Q 010332 26 EDRISRLPDPILCHILSFLP-AKHAVATRILSSR------WNLVWTWLSNLCFDDEFC 76 (513)
Q Consensus 26 ~D~is~LPd~iL~~Ils~Lp-~kda~rts~lSrR------Wr~lw~~~p~L~~~~~~~ 76 (513)
.-.+.+||.+++.+|+.+|| -+|...++.+--. =|.+|+.+-.++|.+..+
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34689999999999999995 7888887765221 257898888888888766
No 83
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=40.65 E-value=5.5 Score=40.03 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=19.1
Q ss_pred cEEEEeeeeccccCCCc-cccCCcceEEeeeEEeC
Q 010332 208 EVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLP 241 (513)
Q Consensus 208 ~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~ 241 (513)
+.++|..+.++.+|+.+ ..+++||.|+|++..|.
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is 104 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS 104 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchh
Confidence 55556666555554433 35666666666665554
No 84
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=38.69 E-value=8.9 Score=39.59 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=34.9
Q ss_pred CcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCc-chHHHHhhcCCccceeEeeeeee
Q 010332 201 LCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPN-NLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 201 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~-~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
+-.+.+|++|+|+++.+..+ .+...++.|+.|++.++.+.. ..+ ..++.|+.|.+ .++.
T Consensus 114 l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~~----~~l~~L~~l~l-~~n~ 173 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISGL----ESLKSLKLLDL-SYNR 173 (414)
T ss_pred hhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccCC----ccchhhhcccC-Ccch
Confidence 33467777777777776654 333445557777777776654 222 22566666666 5554
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=38.56 E-value=18 Score=21.35 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=14.0
Q ss_pred CCcceEEeeeEEeCcchHHHH
Q 010332 228 PCLKFLHIEMYCLPNNLTERL 248 (513)
Q Consensus 228 ~~Lk~L~L~~~~~~~~~l~~l 248 (513)
++|+.|+|+++.+.+.....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 467788888877776544433
No 86
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=37.31 E-value=4.8 Score=43.68 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=28.8
Q ss_pred cCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEe
Q 010332 227 FPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRF 287 (513)
Q Consensus 227 ~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~ 287 (513)
+|.|+.|+|+++.+.+ .+ .+..||.|++|+| .+... ..+..+...+-.|..|.+.+
T Consensus 186 l~ale~LnLshNk~~~--v~-~Lr~l~~LkhLDl-syN~L-~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK--VD-NLRRLPKLKHLDL-SYNCL-RHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HHHhhhhccchhhhhh--hH-HHHhccccccccc-ccchh-ccccccchhhhhheeeeecc
Confidence 5666667777666654 11 3556677777776 43322 33333333333344444444
No 87
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=34.79 E-value=27 Score=27.71 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.4
Q ss_pred cccCCCChHHHHHHhcCCchhhhhh
Q 010332 27 DRISRLPDPILCHILSFLPAKHAVA 51 (513)
Q Consensus 27 D~is~LPd~iL~~Ils~Lp~kda~r 51 (513)
..++.||.||-..||++|+-+|...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6789999999999999999988753
No 88
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=33.52 E-value=63 Score=23.76 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=27.7
Q ss_pred CcccEEEEEecc---CCHHHHHHHHhcCCCcceEEEEecc
Q 010332 392 PNLTYLEVHIGG---TSWKLLLAILNSLPNLEVLLIHSHA 428 (513)
Q Consensus 392 ~~Lk~L~l~~~~---~~~~~l~~lL~~~P~Le~L~i~~~~ 428 (513)
.+|+.+.+.... ....-+..||+++|.|+++.|....
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 446777775532 2456888999999999999998854
No 89
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=32.14 E-value=22 Score=20.21 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=13.0
Q ss_pred CcccEEEEeeeeccccCC
Q 010332 205 TTLEVLVLYSDFVINIPP 222 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~ 222 (513)
.+|++|+|.++.+..+|+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 457888888888777643
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=32.14 E-value=22 Score=20.21 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=13.0
Q ss_pred CcccEEEEeeeeccccCC
Q 010332 205 TTLEVLVLYSDFVINIPP 222 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~ 222 (513)
.+|++|+|.++.+..+|+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 457888888888777643
No 91
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.05 E-value=18 Score=27.77 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=28.5
Q ss_pred CCChHHHHHHhcCCchhhhhhhhhhhh--hhHHhhccC
Q 010332 31 RLPDPILCHILSFLPAKHAVATRILSS--RWNLVWTWL 66 (513)
Q Consensus 31 ~LPd~iL~~Ils~Lp~kda~rts~lSr--RWr~lw~~~ 66 (513)
.+||+.=.....++-.++.++..-|-+ .|+++|+..
T Consensus 10 ~~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~~ 47 (98)
T COG4829 10 RVPDSMDADAVERVRAREKARSRELQAQGKLLRLWRRP 47 (98)
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhcc
Confidence 467777777788888999999887766 599999843
No 92
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=29.95 E-value=12 Score=32.10 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=45.9
Q ss_pred ccccCCCCcC-CCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEe
Q 010332 194 PVELPESLCT-STTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSI 260 (513)
Q Consensus 194 ~~~lp~~l~~-~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L 260 (513)
.-.+|..+-. .++++.|.|..+.+.++|...+.+|.|+.|++....+.. +.+++...-+|-.|..
T Consensus 65 fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~--~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 65 FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA--EPRVIAPLIKLDMLDS 130 (177)
T ss_pred hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc--chHHHHHHHhHHHhcC
Confidence 4456665533 468999999999999987677889999999999988764 3334443344444444
No 93
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=25.86 E-value=21 Score=34.98 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=33.5
Q ss_pred cCCCChHHHHHHhcCCchhhhhhhhhhhhhhHHhhccCc
Q 010332 29 ISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTWLS 67 (513)
Q Consensus 29 is~LPd~iL~~Ils~Lp~kda~rts~lSrRWr~lw~~~p 67 (513)
+..+|+++++.|++|+.-+++++.+.+|+|-..+-...|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 346899999999999999999999999999987654443
Done!