Query 010332
Match_columns 513
No_of_seqs 190 out of 1713
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 04:30:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.8 5.6E-20 1.9E-24 197.3 11.5 216 25-287 5-252 (592)
2 2p1m_B Transport inhibitor res 99.8 4.1E-21 1.4E-25 206.2 2.5 37 26-62 3-40 (594)
3 2ast_B S-phase kinase-associat 99.7 1.7E-19 5.8E-24 179.6 -2.3 279 27-420 7-299 (336)
4 4fcg_A Uncharacterized protein 99.1 2.7E-11 9.2E-16 119.9 5.3 209 157-429 70-289 (328)
5 2z80_A TOLL-like receptor 2, v 99.0 2.5E-09 8.6E-14 106.7 15.3 259 168-472 52-329 (353)
6 3ogk_B Coronatine-insensitive 99.0 2.3E-10 7.8E-15 122.4 8.0 270 198-482 263-546 (592)
7 2p1m_B Transport inhibitor res 99.0 9.5E-11 3.3E-15 125.3 1.2 238 226-478 287-535 (594)
8 4fcg_A Uncharacterized protein 98.9 2.8E-10 9.7E-15 112.5 3.4 228 205-483 81-310 (328)
9 2z66_A Variable lymphocyte rec 98.9 1.2E-10 4E-15 113.9 -0.5 249 194-471 19-275 (306)
10 2ast_B S-phase kinase-associat 98.8 6.3E-11 2.2E-15 117.3 -5.4 204 205-427 70-282 (336)
11 4fmz_A Internalin; leucine ric 98.8 7.7E-10 2.6E-14 110.0 2.1 236 201-484 84-321 (347)
12 4fmz_A Internalin; leucine ric 98.8 9.8E-10 3.3E-14 109.2 2.4 253 168-485 44-298 (347)
13 3zyi_A Leucine-rich repeat-con 98.8 2.9E-10 9.8E-15 117.6 -2.1 126 199-334 93-225 (452)
14 2z80_A TOLL-like receptor 2, v 98.8 1.1E-08 3.9E-13 101.9 9.4 187 194-429 43-234 (353)
15 1o6v_A Internalin A; bacterial 98.8 3.4E-09 1.2E-13 109.9 5.6 99 361-483 239-340 (466)
16 1o6v_A Internalin A; bacterial 98.8 3.3E-09 1.1E-13 110.0 5.3 100 362-485 218-320 (466)
17 3zyj_A Leucine-rich repeat-con 98.7 4.5E-10 1.5E-14 115.7 -3.0 203 199-429 82-291 (440)
18 1xku_A Decorin; proteoglycan, 98.7 9.7E-10 3.3E-14 108.6 -0.7 203 201-430 72-276 (330)
19 2id5_A Lingo-1, leucine rich r 98.7 2.5E-09 8.6E-14 111.2 2.4 204 198-429 121-332 (477)
20 2id5_A Lingo-1, leucine rich r 98.7 7.6E-09 2.6E-13 107.5 4.5 204 199-428 50-259 (477)
21 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 9.2E-09 3.1E-13 72.0 3.5 38 26-63 6-43 (53)
22 2z81_A CD282 antigen, TOLL-lik 98.7 7.8E-08 2.7E-12 101.6 12.2 223 168-429 26-263 (549)
23 2z63_A TOLL-like receptor 4, v 98.7 2.4E-09 8.3E-14 113.8 0.4 244 195-473 295-548 (570)
24 3t6q_A CD180 antigen; protein- 98.7 8.4E-10 2.9E-14 118.4 -3.4 60 203-264 276-335 (606)
25 3o53_A Protein LRIM1, AGAP0063 98.7 2E-09 6.9E-14 105.7 -0.7 209 204-454 33-245 (317)
26 2ca6_A RAN GTPase-activating p 98.6 1.5E-09 5.2E-14 109.7 -2.2 219 197-430 52-316 (386)
27 3v47_A TOLL-like receptor 5B a 98.6 5.2E-10 1.8E-14 115.6 -5.8 67 198-265 96-165 (455)
28 3o6n_A APL1; leucine-rich repe 98.6 8.2E-09 2.8E-13 104.4 2.7 38 361-401 244-281 (390)
29 1h6u_A Internalin H; cell adhe 98.6 7.2E-09 2.4E-13 101.4 1.9 171 200-429 58-229 (308)
30 1ozn_A Reticulon 4 receptor; N 98.6 2.8E-09 9.5E-14 102.9 -1.1 200 205-429 32-237 (285)
31 3vq2_A TLR4, TOLL-like recepto 98.6 1.9E-09 6.4E-14 115.6 -2.8 76 168-264 285-360 (606)
32 3oja_A Leucine-rich immune mol 98.6 4.8E-09 1.6E-13 109.5 0.3 190 201-428 54-248 (487)
33 2z81_A CD282 antigen, TOLL-lik 98.6 9E-08 3.1E-12 101.1 9.6 240 194-482 17-259 (549)
34 3t6q_A CD180 antigen; protein- 98.6 3E-09 1E-13 114.1 -2.1 68 196-264 292-360 (606)
35 1z7x_W Ribonuclease inhibitor; 98.6 4.8E-10 1.6E-14 116.0 -8.1 218 196-428 104-352 (461)
36 1ogq_A PGIP-2, polygalacturona 98.6 6.4E-09 2.2E-13 102.0 0.0 225 168-429 50-280 (313)
37 3oja_B Anopheles plasmodium-re 98.6 1.1E-08 3.7E-13 109.7 1.6 200 202-429 120-336 (597)
38 2z7x_B TOLL-like receptor 1, v 98.6 1.4E-07 4.7E-12 99.1 10.0 133 195-337 13-148 (520)
39 2z63_A TOLL-like receptor 4, v 98.6 1.1E-08 3.9E-13 108.5 1.7 246 197-485 274-529 (570)
40 3zyj_A Leucine-rich repeat-con 98.6 1.2E-08 4.2E-13 104.9 1.9 241 194-472 55-307 (440)
41 3bz5_A Internalin-J, INLJ; leu 98.5 2.1E-08 7.3E-13 103.6 2.9 58 201-265 60-117 (457)
42 1z7x_W Ribonuclease inhibitor; 98.5 7E-10 2.4E-14 114.7 -8.4 260 203-483 26-322 (461)
43 3rgz_A Protein brassinosteroid 98.5 5E-09 1.7E-13 115.6 -2.1 213 196-429 284-502 (768)
44 3o6n_A APL1; leucine-rich repe 98.5 4.1E-08 1.4E-12 99.2 4.8 213 196-454 131-347 (390)
45 2ca6_A RAN GTPase-activating p 98.5 3.3E-09 1.1E-13 107.1 -3.3 239 195-454 22-311 (386)
46 2z7x_B TOLL-like receptor 1, v 98.5 3.7E-07 1.3E-11 95.8 12.0 65 362-429 321-386 (520)
47 3v47_A TOLL-like receptor 5B a 98.5 1.2E-08 4E-13 105.3 -0.5 91 196-288 69-164 (455)
48 4eco_A Uncharacterized protein 98.5 2.8E-08 9.5E-13 107.2 2.4 207 197-429 239-469 (636)
49 3rgz_A Protein brassinosteroid 98.5 1.2E-08 4E-13 112.7 -0.7 130 197-334 116-254 (768)
50 3oja_B Anopheles plasmodium-re 98.5 5E-08 1.7E-12 104.5 3.8 212 168-429 123-357 (597)
51 1h6u_A Internalin H; cell adhe 98.5 6.9E-08 2.4E-12 94.3 4.5 141 167-335 62-203 (308)
52 2ft3_A Biglycan; proteoglycan, 98.5 3.5E-09 1.2E-13 104.7 -5.1 114 361-481 213-327 (332)
53 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 9.6E-07 3.3E-11 93.7 13.3 65 362-429 350-415 (562)
54 3oja_A Leucine-rich immune mol 98.5 9.5E-09 3.3E-13 107.2 -2.4 190 204-429 33-226 (487)
55 3vq2_A TLR4, TOLL-like recepto 98.5 1.4E-08 4.7E-13 108.9 -1.4 118 201-335 281-407 (606)
56 3zyi_A Leucine-rich repeat-con 98.4 7.5E-08 2.5E-12 99.4 4.0 206 168-415 99-317 (452)
57 2z66_A Variable lymphocyte rec 98.4 9.1E-10 3.1E-14 107.5 -10.3 224 168-431 28-262 (306)
58 3o53_A Protein LRIM1, AGAP0063 98.4 1.4E-08 4.8E-13 99.7 -2.1 149 157-335 21-177 (317)
59 1ozn_A Reticulon 4 receptor; N 98.4 1.2E-08 4.3E-13 98.3 -2.6 212 167-416 31-253 (285)
60 1p9a_G Platelet glycoprotein I 98.4 1.7E-08 5.6E-13 97.9 -2.0 53 205-260 10-62 (290)
61 3rfs_A Internalin B, repeat mo 98.4 2.4E-08 8.1E-13 95.8 -0.9 172 201-428 59-233 (272)
62 2o6q_A Variable lymphocyte rec 98.4 3.5E-08 1.2E-12 94.4 -0.1 66 196-265 30-96 (270)
63 1xku_A Decorin; proteoglycan, 98.4 3.3E-08 1.1E-12 97.5 -0.3 238 168-454 76-327 (330)
64 3j0a_A TOLL-like receptor 5; m 98.4 1.5E-07 5.2E-12 104.9 4.9 67 198-265 90-159 (844)
65 3bz5_A Internalin-J, INLJ; leu 98.4 3.7E-08 1.3E-12 101.8 -1.1 119 200-335 37-156 (457)
66 1ogq_A PGIP-2, polygalacturona 98.3 5.7E-08 2E-12 95.1 0.3 221 168-428 76-302 (313)
67 3j0a_A TOLL-like receptor 5; m 98.3 3E-07 1E-11 102.5 5.7 85 201-288 286-372 (844)
68 1wwl_A Monocyte differentiatio 98.3 1.8E-08 6.1E-13 98.7 -3.8 84 203-288 93-183 (312)
69 2z62_A TOLL-like receptor 4, v 98.3 4.4E-08 1.5E-12 93.9 -1.2 208 194-430 19-237 (276)
70 4ecn_A Leucine-rich repeat pro 98.3 1.4E-07 4.7E-12 104.6 2.5 207 197-429 481-709 (876)
71 2o6q_A Variable lymphocyte rec 98.3 5.1E-08 1.7E-12 93.3 -1.5 122 205-335 16-141 (270)
72 3goz_A Leucine-rich repeat-con 98.3 2.6E-08 9E-13 99.6 -3.7 73 356-428 186-264 (362)
73 1ziw_A TOLL-like receptor 3; i 98.3 9E-08 3.1E-12 104.0 -0.0 35 207-241 250-285 (680)
74 3g06_A SSPH2 (leucine-rich rep 98.3 5E-07 1.7E-11 96.7 5.4 55 203-266 99-153 (622)
75 1h6t_A Internalin B; cell adhe 98.3 2.9E-07 9.8E-12 89.1 2.8 59 202-265 65-123 (291)
76 3a79_B TLR6, VLRB.59, TOLL-lik 98.2 1.2E-06 4.2E-11 92.9 7.6 58 205-264 52-110 (562)
77 2ft3_A Biglycan; proteoglycan, 98.2 3.4E-08 1.2E-12 97.5 -4.2 201 198-428 95-305 (332)
78 2ra8_A Uncharacterized protein 98.2 5.3E-07 1.8E-11 89.9 4.1 168 226-428 137-318 (362)
79 4ecn_A Leucine-rich repeat pro 98.2 2E-07 6.8E-12 103.3 0.9 68 195-265 505-584 (876)
80 4glp_A Monocyte differentiatio 98.2 4.3E-08 1.5E-12 95.8 -4.1 57 365-430 251-307 (310)
81 4ezg_A Putative uncharacterize 98.2 7.6E-07 2.6E-11 80.7 4.1 58 203-265 42-99 (197)
82 3rfs_A Internalin B, repeat mo 98.2 7.2E-08 2.5E-12 92.4 -3.1 86 200-288 80-167 (272)
83 3goz_A Leucine-rich repeat-con 98.2 9.8E-08 3.3E-12 95.5 -2.3 236 203-480 20-287 (362)
84 3g06_A SSPH2 (leucine-rich rep 98.2 9.8E-07 3.4E-11 94.4 5.1 109 204-334 80-188 (622)
85 2xwt_C Thyrotropin receptor; s 98.2 5.8E-07 2E-11 84.1 2.9 79 205-288 31-115 (239)
86 4eco_A Uncharacterized protein 98.2 1.5E-07 5.3E-12 101.4 -1.7 83 168-266 249-342 (636)
87 1ziw_A TOLL-like receptor 3; i 98.1 3E-07 1E-11 99.9 0.2 59 205-264 381-440 (680)
88 1m9s_A Internalin B; cell inva 98.1 3.3E-07 1.1E-11 97.9 0.3 165 204-402 42-207 (605)
89 2z62_A TOLL-like receptor 4, v 98.1 1.8E-07 6.3E-12 89.6 -1.5 198 168-403 28-235 (276)
90 2xwt_C Thyrotropin receptor; s 98.1 1.4E-06 4.9E-11 81.4 4.2 103 168-288 31-140 (239)
91 4ezg_A Putative uncharacterize 98.0 1.9E-06 6.5E-11 78.0 2.8 101 168-288 44-146 (197)
92 2ell_A Acidic leucine-rich nuc 98.0 1.9E-06 6.4E-11 75.8 2.3 105 168-288 24-130 (168)
93 1xeu_A Internalin C; cellular 98.0 1.7E-06 5.8E-11 82.4 1.6 79 202-288 38-116 (263)
94 1h6t_A Internalin B; cell adhe 98.0 2.8E-06 9.5E-11 82.1 3.1 167 203-403 44-211 (291)
95 3cvr_A Invasion plasmid antige 97.9 1.8E-06 6.2E-11 91.2 1.6 186 167-405 58-243 (571)
96 1p9a_G Platelet glycoprotein I 97.9 1.2E-06 4.1E-11 84.7 -0.2 194 194-417 22-224 (290)
97 3m19_A Variable lymphocyte rec 97.9 1.3E-06 4.5E-11 82.4 0.0 69 194-266 26-95 (251)
98 1m9s_A Internalin B; cell inva 97.9 1.2E-06 4.1E-11 93.5 -0.3 151 200-379 60-211 (605)
99 3e4g_A ATP synthase subunit S, 97.9 3.1E-06 1.1E-10 74.6 2.4 93 194-288 50-149 (176)
100 2e31_A FBS1, F-box only protei 97.9 5.5E-06 1.9E-10 79.0 3.7 37 26-62 48-85 (297)
101 3m19_A Variable lymphocyte rec 97.8 7.7E-07 2.6E-11 84.0 -3.3 79 205-288 14-93 (251)
102 1wwl_A Monocyte differentiatio 97.8 3.2E-06 1.1E-10 82.5 0.3 197 163-402 90-306 (312)
103 3l2o_B F-box only protein 4; s 97.8 4.3E-06 1.5E-10 78.8 1.1 34 29-62 5-38 (312)
104 2ell_A Acidic leucine-rich nuc 97.8 3.6E-06 1.2E-10 74.0 0.3 80 204-288 23-105 (168)
105 1xeu_A Internalin C; cellular 97.8 2.9E-06 1E-10 80.7 -0.6 117 204-334 18-135 (263)
106 2je0_A Acidic leucine-rich nuc 97.7 2.6E-06 8.8E-11 73.3 -1.4 68 196-266 33-100 (149)
107 1jl5_A Outer protein YOPM; leu 97.7 2.1E-05 7.1E-10 81.0 4.4 179 201-430 191-370 (454)
108 4g8a_A TOLL-like receptor 4; l 97.7 5.6E-05 1.9E-09 80.7 7.8 68 196-265 66-135 (635)
109 3cvr_A Invasion plasmid antige 97.7 1.7E-05 6E-10 83.7 3.5 177 205-429 59-242 (571)
110 3e4g_A ATP synthase subunit S, 97.7 3.5E-06 1.2E-10 74.3 -1.7 87 226-317 59-150 (176)
111 2v9t_B SLIT homolog 2 protein 97.6 1.5E-05 5E-10 73.6 1.9 154 194-417 23-181 (220)
112 2je0_A Acidic leucine-rich nuc 97.6 2.7E-06 9.2E-11 73.2 -3.1 80 204-288 16-98 (149)
113 4g8a_A TOLL-like receptor 4; l 97.6 7E-06 2.4E-10 87.8 -1.4 105 360-473 489-596 (635)
114 2o6s_A Variable lymphocyte rec 97.6 1.3E-05 4.5E-10 73.0 0.5 158 194-429 19-177 (208)
115 3un9_A NLR family member X1; l 97.5 4.8E-06 1.6E-10 83.4 -3.2 75 356-430 174-252 (372)
116 4glp_A Monocyte differentiatio 97.5 3.5E-05 1.2E-09 74.9 2.8 66 200-266 164-236 (310)
117 1ds9_A Outer arm dynein; leuci 97.5 3.7E-06 1.3E-10 76.2 -4.2 83 200-288 43-125 (198)
118 1jl5_A Outer protein YOPM; leu 97.5 4.6E-05 1.6E-09 78.4 3.6 73 205-288 215-287 (454)
119 4ay9_X Follicle-stimulating ho 97.5 1.4E-05 4.9E-10 79.2 -0.5 214 168-426 30-255 (350)
120 3v7d_B Cell division control p 97.4 3.5E-05 1.2E-09 78.9 2.1 41 24-64 10-50 (464)
121 1a9n_A U2A', U2A'; complex (nu 97.4 1.2E-05 4E-10 71.3 -1.3 81 202-288 16-98 (176)
122 1ds9_A Outer arm dynein; leuci 97.4 2.3E-05 7.8E-10 70.9 -0.1 39 224-266 44-82 (198)
123 3e6j_A Variable lymphocyte rec 97.4 4.3E-05 1.5E-09 70.9 1.4 90 194-288 31-122 (229)
124 3e6j_A Variable lymphocyte rec 97.3 6.8E-05 2.3E-09 69.5 1.6 104 168-288 40-145 (229)
125 2v70_A SLIT-2, SLIT homolog 2 97.2 7.5E-05 2.6E-09 68.7 1.2 151 195-415 24-180 (220)
126 4ay9_X Follicle-stimulating ho 97.2 6.9E-05 2.4E-09 74.2 0.9 113 194-316 21-138 (350)
127 2v70_A SLIT-2, SLIT homolog 2 97.2 2.1E-05 7E-10 72.6 -2.7 153 207-430 13-166 (220)
128 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.00021 7.2E-09 72.7 4.3 40 23-62 13-52 (445)
129 2o6s_A Variable lymphocyte rec 97.1 0.0001 3.5E-09 67.0 1.4 104 168-288 28-134 (208)
130 2xot_A Amphoterin-induced prot 97.1 3E-05 1E-09 77.2 -2.5 68 194-265 30-99 (361)
131 1p22_A F-BOX/WD-repeat protein 97.1 0.00014 4.9E-09 73.8 2.2 39 24-62 6-48 (435)
132 2ra8_A Uncharacterized protein 97.1 0.00079 2.7E-08 66.8 7.1 60 201-263 168-228 (362)
133 2v9t_B SLIT homolog 2 protein 96.9 0.0002 6.9E-09 65.8 0.8 104 168-288 32-138 (220)
134 1a9n_A U2A', U2A'; complex (nu 96.8 0.00028 9.6E-09 62.2 0.9 106 206-317 43-151 (176)
135 2wfh_A SLIT homolog 2 protein 96.8 0.00023 8E-09 63.9 0.3 67 195-265 23-89 (193)
136 1w8a_A SLIT protein; signaling 96.8 0.00025 8.5E-09 63.6 0.4 69 194-266 20-90 (192)
137 3sb4_A Hypothetical leucine ri 96.7 0.00059 2E-08 66.8 2.8 62 360-428 245-308 (329)
138 2xot_A Amphoterin-induced prot 96.7 0.00036 1.2E-08 69.3 1.0 120 194-319 51-176 (361)
139 2o6r_A Variable lymphocyte rec 96.7 0.00033 1.1E-08 61.8 0.6 89 195-288 20-110 (177)
140 1dce_A Protein (RAB geranylger 96.7 0.00035 1.2E-08 73.8 1.0 65 196-265 455-519 (567)
141 2wfh_A SLIT homolog 2 protein 96.5 0.00064 2.2E-08 61.0 1.4 83 168-266 31-114 (193)
142 2o6r_A Variable lymphocyte rec 96.4 0.0011 3.6E-08 58.4 2.1 83 168-266 28-112 (177)
143 1dce_A Protein (RAB geranylger 96.4 0.00065 2.2E-08 71.8 0.8 76 206-288 442-518 (567)
144 4b8c_D Glucose-repressible alc 96.4 0.00029 1E-08 76.8 -2.4 111 198-317 217-327 (727)
145 4b8c_D Glucose-repressible alc 96.3 0.00035 1.2E-08 76.2 -2.2 91 194-288 236-326 (727)
146 2r9u_A Variable lymphocyte rec 96.0 0.0017 5.8E-08 57.1 1.3 68 194-265 24-92 (174)
147 3g39_A Variable lymphocyte rec 96.0 0.0019 6.4E-08 56.6 1.3 68 194-265 21-89 (170)
148 4fdw_A Leucine rich hypothetic 95.9 0.0028 9.4E-08 63.9 2.6 56 203-260 178-233 (401)
149 2ifg_A High affinity nerve gro 95.9 0.0018 6.2E-08 63.6 1.2 91 194-288 21-113 (347)
150 1w8a_A SLIT protein; signaling 95.8 0.0017 5.9E-08 58.0 0.6 81 169-265 30-113 (192)
151 2r9u_A Variable lymphocyte rec 95.5 0.0078 2.7E-07 52.8 3.5 83 168-266 33-117 (174)
152 3sb4_A Hypothetical leucine ri 95.5 0.0041 1.4E-07 60.7 1.7 193 204-424 100-328 (329)
153 3g39_A Variable lymphocyte rec 95.4 0.0091 3.1E-07 52.1 3.5 82 168-265 30-113 (170)
154 1io0_A Tropomodulin; LRR prote 95.2 0.013 4.5E-07 51.9 4.0 37 391-427 120-161 (185)
155 3un9_A NLR family member X1; l 92.7 0.0078 2.7E-07 59.9 -3.1 110 205-318 126-251 (372)
156 4fdw_A Leucine rich hypothetic 92.1 0.12 4.1E-06 51.8 4.7 12 249-260 176-187 (401)
157 1io0_A Tropomodulin; LRR prote 91.9 0.086 2.9E-06 46.5 3.1 128 353-483 24-160 (185)
158 3rw6_A Nuclear RNA export fact 88.1 0.18 6E-06 47.4 1.9 63 197-260 188-258 (267)
159 2ifg_A High affinity nerve gro 87.6 0.15 5.1E-06 49.6 1.1 69 195-266 45-115 (347)
160 3rw6_A Nuclear RNA export fact 84.0 0.23 8E-06 46.5 0.4 38 205-242 170-210 (267)
161 4fs7_A Uncharacterized protein 81.1 0.19 6.3E-06 50.1 -1.6 186 202-424 159-350 (394)
162 1pgv_A TMD-1, tropomodulin TMD 72.7 0.5 1.7E-05 42.0 -1.1 57 204-260 69-133 (197)
163 4gt6_A Cell surface protein; l 64.8 5 0.00017 39.5 4.2 57 304-377 332-390 (394)
164 1pgv_A TMD-1, tropomodulin TMD 63.1 2.5 8.4E-05 37.5 1.4 62 226-288 68-136 (197)
165 4fs7_A Uncharacterized protein 57.7 16 0.00055 35.7 6.5 16 360-375 361-376 (394)
166 3rfe_A Platelet glycoprotein I 57.0 4.4 0.00015 33.1 1.8 44 196-241 24-68 (130)
167 4h09_A Hypothetical leucine ri 30.5 18 0.00062 35.0 1.7 73 203-286 261-341 (379)
168 4gt6_A Cell surface protein; l 29.5 35 0.0012 33.2 3.6 76 202-288 285-367 (394)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=5.6e-20 Score=197.34 Aligned_cols=216 Identities=13% Similarity=0.108 Sum_probs=115.8
Q ss_pred CCcccC----CCChHHHHHHhcCC-chhhhhhhhhhhhhhHHhhccCcc-eEeecCCCCCccchhhhhhhhhhhHHHHhh
Q 010332 25 SEDRIS----RLPDPILCHILSFL-PAKHAVATRILSSRWNLVWTWLSN-LCFDDEFCERPAIDDALTKDTAQRFDKFVH 98 (513)
Q Consensus 25 ~~D~is----~LPd~iL~~Ils~L-p~kda~rts~lSrRWr~lw~~~p~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 98 (513)
++||++ +||||++.+||+|| |++|++++++|||||++++...+. +.+.. .+. .. ... +..
T Consensus 5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~--~~--------~~~---~~~ 70 (592)
T 3ogk_B 5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYT--AT--------PDR---LSR 70 (592)
T ss_dssp -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGG--SC--------HHH---HHH
T ss_pred hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccc--cC--------hHH---HHH
Confidence 356665 89999999999999 899999999999999998654432 22211 110 00 011 111
Q ss_pred hh-cccccCc--ccc----------cccc----ccCC-CCCCCcccccccccccccccccceeEEEeccCCCCCchhHHH
Q 010332 99 RL-SLRALDP--LFG----------LTNT----FAGM-NAYPRIGFEDFVNWVLDRTNSATLAKFSLQCSNLTDLSLLKF 160 (513)
Q Consensus 99 ~~-~~~~~~~--~~~----------~~~~----~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~ 160 (513)
++ ..+.++. +.. +.+. +... ...+. ++ .+.++... -.+..-.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----------L~------~L~L~~~~----i~~~~~~ 130 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ----------LK------SVHFRRMI----VSDLDLD 130 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT----------CC------EEEEESCB----CCHHHHH
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC----------CC------eEEeeccE----ecHHHHH
Confidence 11 1110000 000 0000 0000 01122 44 55554321 1233445
Q ss_pred HHHHHHhCCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEeeeeccccCC-----CccccCCcceEEe
Q 010332 161 WVSSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPP-----SGLCFPCLKFLHI 235 (513)
Q Consensus 161 wl~~a~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~-----~~~~~~~Lk~L~L 235 (513)
|+......++++|++.- +..- ....++..+..|++|++|+|.+|.+.+... ...++++|++|+|
T Consensus 131 ~l~~~~~~~L~~L~L~~----------~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L 199 (592)
T 3ogk_B 131 RLAKARADDLETLKLDK----------CSGF-TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF 199 (592)
T ss_dssp HHHHHHGGGCCEEEEES----------CEEE-EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEEC
T ss_pred HHHHhccccCcEEECcC----------CCCc-CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEe
Confidence 55555455688888761 1000 011222223357888888888887654211 1236888888888
Q ss_pred eeEEeC---cchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEe
Q 010332 236 EMYCLP---NNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRF 287 (513)
Q Consensus 236 ~~~~~~---~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~ 287 (513)
.++.+. ...+..++.+||.|+.|.| ..|.. .++.......++|+.|.+..
T Consensus 200 ~~n~~~~~~~~~l~~~~~~~~~L~~L~L-~~~~~-~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 200 YMTEFAKISPKDLETIARNCRSLVSVKV-GDFEI-LELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp TTCCCSSCCHHHHHHHHHHCTTCCEEEC-SSCBG-GGGHHHHHHCTTCCEEEECB
T ss_pred eccCCCccCHHHHHHHHhhCCCCcEEec-cCccH-HHHHHHHhhhhHHHhhcccc
Confidence 888776 3677888888999999999 77765 33332323346677777754
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=4.1e-21 Score=206.21 Aligned_cols=37 Identities=19% Similarity=0.481 Sum_probs=29.5
Q ss_pred CcccCCCChHHHHHHhcCCc-hhhhhhhhhhhhhhHHh
Q 010332 26 EDRISRLPDPILCHILSFLP-AKHAVATRILSSRWNLV 62 (513)
Q Consensus 26 ~D~is~LPd~iL~~Ils~Lp-~kda~rts~lSrRWr~l 62 (513)
.|+|++||||||.+||+||| ++|+++++.|||||+++
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 58999999999999999999 99999999999999988
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=1.7e-19 Score=179.58 Aligned_cols=279 Identities=14% Similarity=0.067 Sum_probs=162.9
Q ss_pred cccCCCChHHHHHHhcCCchhhhhhhhhhhhhhHHhhcc---CcceEeecCCCCCccchhhhhhhhhhhHHHHhhhhccc
Q 010332 27 DRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTW---LSNLCFDDEFCERPAIDDALTKDTAQRFDKFVHRLSLR 103 (513)
Q Consensus 27 D~is~LPd~iL~~Ils~Lp~kda~rts~lSrRWr~lw~~---~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 103 (513)
..|++||||++.+||++|+.+|+++++.|||||+++... ...+++....+
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~--------------------------- 59 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL--------------------------- 59 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC---------------------------
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC---------------------------
Confidence 458999999999999999999999999999999998632 11111111110
Q ss_pred ccCccccccccccCCCCCCCcccccccccccccccccceeEEEeccCCCCCchhHHHHHHHHHhCCceEEEEEeecCCcc
Q 010332 104 ALDPLFGLTNTFAGMNAYPRIGFEDFVNWVLDRTNSATLAKFSLQCSNLTDLSLLKFWVSSAIMRNVREIEIYLESHGLH 183 (513)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~ 183 (513)
....+.....++++.|++.-
T Consensus 60 ------------------------------------------------------~~~~~~~~~~~~l~~L~l~~------ 79 (336)
T 2ast_B 60 ------------------------------------------------------HPDVTGRLLSQGVIAFRCPR------ 79 (336)
T ss_dssp ------------------------------------------------------CHHHHHHHHHTTCSEEECTT------
T ss_pred ------------------------------------------------------CHHHHHhhhhccceEEEcCC------
Confidence 02233444446777777640
Q ss_pred ceeeccCCCcccccCCCCcCCCcccEEEEeeeeccc--cCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEee
Q 010332 184 TLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVIN--IPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIV 261 (513)
Q Consensus 184 ~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~ 261 (513)
.. ....+..++.+++|++|+|++|.+.. ++.....+++|++|+|.++.+.+.... .+..||.|++|+|
T Consensus 80 ---n~-----l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L- 149 (336)
T 2ast_B 80 ---SF-----MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNL- 149 (336)
T ss_dssp ---CE-----ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEEC-
T ss_pred ---cc-----ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEEC-
Confidence 11 12333446778999999999998754 222345789999999999988764444 4677999999999
Q ss_pred eeeeccC--CceeEEEecCccceEEEEeecCCCCCCCCcceEEEeCC-ceeEEEEEecc--cc----ceeeccCCCeeEE
Q 010332 262 GLLVNAD--VVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAP-NLERFHIIDHA--LV----SYMVHELHSLTEA 332 (513)
Q Consensus 262 ~~c~~~~--~~~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap-~L~~L~l~~~~--~~----~~~~~~~p~L~~~ 332 (513)
.+|.... ++..+.-..++|+.|.+.+| ....+..........| +|++|.++++. .. ...+..+++|+.+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWC--FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCC--TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCC--CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 8883202 12222233578888888776 1110001112223567 88888888763 11 1123456677776
Q ss_pred EEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHH
Q 010332 333 FIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAI 412 (513)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~l 412 (513)
++..+. .........+..+++++.|.++.+..... .....+..+++|++|++..+ .....+..+
T Consensus 228 ~l~~~~-------------~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l 291 (336)
T 2ast_B 228 DLSDSV-------------MLKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETLLELGEIPTLKTLQVFGI-VPDGTLQLL 291 (336)
T ss_dssp ECTTCT-------------TCCGGGGGGGGGCTTCCEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTS-SCTTCHHHH
T ss_pred eCCCCC-------------cCCHHHHHHHhCCCCCCEeeCCCCCCCCH--HHHHHHhcCCCCCEEeccCc-cCHHHHHHH
Confidence 663222 00111222345567777777766531100 00012345667777777655 222233344
Q ss_pred HhcCCCcc
Q 010332 413 LNSLPNLE 420 (513)
Q Consensus 413 L~~~P~Le 420 (513)
.+.+|+|+
T Consensus 292 ~~~l~~L~ 299 (336)
T 2ast_B 292 KEALPHLQ 299 (336)
T ss_dssp HHHSTTSE
T ss_pred HhhCcceE
Confidence 44555554
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.13 E-value=2.7e-11 Score=119.90 Aligned_cols=209 Identities=15% Similarity=0.122 Sum_probs=126.1
Q ss_pred hHHHHHHHHHhCCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEee
Q 010332 157 LLKFWVSSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIE 236 (513)
Q Consensus 157 ~~~~wl~~a~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~ 236 (513)
.+..-+..+...+++.|++. ... ...+|..++.++.|++|+|+++.+..+|.....+++|+.|+|+
T Consensus 70 ~~~~~l~~~~~~~l~~L~L~---------~n~-----l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls 135 (328)
T 4fcg_A 70 ATADLLEDATQPGRVALELR---------SVP-----LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLA 135 (328)
T ss_dssp HHHHHHHHHTSTTCCEEEEE---------SSC-----CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEE
T ss_pred hhHHHHhcccccceeEEEcc---------CCC-----chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECC
Confidence 33444555556899999997 111 4578988999999999999999998775556789999999999
Q ss_pred eEEeCcchHHHHhhcCCccceeEeeeeeeccCCcee-EE--------EecCccceEEEEeecCCCCCCCCcceEEEeCCc
Q 010332 237 MYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTN-FN--------ISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPN 307 (513)
Q Consensus 237 ~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~-l~--------i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~ 307 (513)
++.+.. +..-+..++.|++|+| .+|.....+.. +. -..++|+.|.+.++
T Consensus 136 ~n~l~~--lp~~l~~l~~L~~L~L-~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n------------------- 193 (328)
T 4fcg_A 136 RNPLRA--LPASIASLNRLRELSI-RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT------------------- 193 (328)
T ss_dssp SCCCCC--CCGGGGGCTTCCEEEE-EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-------------------
T ss_pred CCcccc--CcHHHhcCcCCCEEEC-CCCCCccccChhHhhccchhhhccCCCCCEEECcCC-------------------
Confidence 998873 3334789999999999 88754111110 00 01344555555554
Q ss_pred eeEEEEEeccccce--eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhcc
Q 010332 308 LERFHIIDHALVSY--MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYE 385 (513)
Q Consensus 308 L~~L~l~~~~~~~~--~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~ 385 (513)
....+ .+..+++|+.+++..... . .+...+..+++++.|.++.+.+.. ..+
T Consensus 194 ---------~l~~lp~~l~~l~~L~~L~L~~N~l-------------~--~l~~~l~~l~~L~~L~Ls~n~~~~---~~p 246 (328)
T 4fcg_A 194 ---------GIRSLPASIANLQNLKSLKIRNSPL-------------S--ALGPAIHHLPKLEELDLRGCTALR---NYP 246 (328)
T ss_dssp ---------CCCCCCGGGGGCTTCCEEEEESSCC-------------C--CCCGGGGGCTTCCEEECTTCTTCC---BCC
T ss_pred ---------CcCcchHhhcCCCCCCEEEccCCCC-------------C--cCchhhccCCCCCEEECcCCcchh---hhH
Confidence 22111 133444555544432220 0 011124456777777777654433 233
Q ss_pred CCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEeccc
Q 010332 386 DFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 386 ~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
..+..+++|++|++..+... ..++.-+..+++|+.|+|..+..
T Consensus 247 ~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 247 PIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTT
T ss_pred HHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCc
Confidence 34456677777777654210 11122256777888888777553
No 5
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.04 E-value=2.5e-09 Score=106.66 Aligned_cols=259 Identities=14% Similarity=0.111 Sum_probs=172.4
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCC-CCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPE-SLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLT 245 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l 245 (513)
.++++|++. +.. ...+|. .+..+++|++|+|.++.+..+++. ..++++|++|+|+++.+.+ ..
T Consensus 52 ~~L~~L~l~----------~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~ 116 (353)
T 2z80_A 52 EAVKSLDLS----------NNR----ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LS 116 (353)
T ss_dssp TTCCEEECT----------TSC----CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CC
T ss_pred ccCcEEECC----------CCc----CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CC
Confidence 478888876 110 334555 566689999999999998877554 4578999999999998875 22
Q ss_pred HHHhhcCCccceeEeeeeeeccCCcee--EEEecCccceEEEEeecCCCCCCCCcceE----EEeCCceeEEEEEecccc
Q 010332 246 ERLFSACPVLEELSIVGLLVNADVVTN--FNISSPTLKKLGIRFDIGDQGSSYNEHKI----LIRAPNLERFHIIDHALV 319 (513)
Q Consensus 246 ~~lls~cp~Le~L~L~~~c~~~~~~~~--l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i----~i~ap~L~~L~l~~~~~~ 319 (513)
...+.+++.|++|++ .++.. ..+.. ..-..++|+.|.+.++ . ....+ .-..++|++|.+.++...
T Consensus 117 ~~~~~~l~~L~~L~L-~~n~l-~~l~~~~~~~~l~~L~~L~l~~n--~-----~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 117 SSWFKPLSSLTFLNL-LGNPY-KTLGETSLFSHLTKLQILRVGNM--D-----TFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp HHHHTTCTTCSEEEC-TTCCC-SSSCSSCSCTTCTTCCEEEEEES--S-----SCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred HhHhCCCccCCEEEC-CCCCC-cccCchhhhccCCCCcEEECCCC--c-----cccccCHHHccCCCCCCEEECCCCCcC
Confidence 345788999999999 87754 33322 1123578999999987 1 11111 124689999999997654
Q ss_pred ce---eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCC---CCCcCc
Q 010332 320 SY---MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDF---FPTFPN 393 (513)
Q Consensus 320 ~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~---~p~~~~ 393 (513)
.. .+..+++|+.+++.... .......++..+++++.|+++.+.+.. ..... ......
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~--------------l~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQ--------------HILLLEIFVDVTSSVECLELRDTDLDT---FHFSELSTGETNSL 250 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSC--------------STTHHHHHHHHTTTEEEEEEESCBCTT---CCCC------CCCC
T ss_pred ccCHHHHhccccCCeecCCCCc--------------cccchhhhhhhcccccEEECCCCcccc---ccccccccccccch
Confidence 33 45678888888886443 111223345567999999999987765 22222 224677
Q ss_pred ccEEEEEeccCC---HHHHHHHHhcCCCcceEEEEecccCCCCCccccCccccccccccEEEEE--EecCcHHHHHHHHH
Q 010332 394 LTYLEVHIGGTS---WKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEPVPRCLLFHVKKIEMR--SFGGYEHEFQLVKY 468 (513)
Q Consensus 394 Lk~L~l~~~~~~---~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~w~~~~~~c~~~~Lk~v~i~--~f~g~~~e~~l~~~ 468 (513)
++.+.+...... ...++..+..+|+|+.|++..+....-.. ... ....+|+.+.+. .+.+....+..+..
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~----~~~-~~l~~L~~L~L~~N~~~~~~~~l~~l~~ 325 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD----GIF-DRLTSLQKIWLHTNPWDCSCPRIDYLSR 325 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT----TTT-TTCTTCCEEECCSSCBCCCHHHHHHHHH
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH----HHH-hcCCCCCEEEeeCCCccCcCCCcHHHHH
Confidence 888888776543 34677778999999999999876542111 000 124789999887 56677665665555
Q ss_pred HHhc
Q 010332 469 FLKN 472 (513)
Q Consensus 469 lL~~ 472 (513)
.+++
T Consensus 326 ~~~~ 329 (353)
T 2z80_A 326 WLNK 329 (353)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4544
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.04 E-value=2.3e-10 Score=122.37 Aligned_cols=270 Identities=15% Similarity=0.087 Sum_probs=162.3
Q ss_pred CCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEec
Q 010332 198 PESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISS 277 (513)
Q Consensus 198 p~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~ 277 (513)
+..+..+++|+.|.+.++....++.....+++|++|+|+++.+++..+..++.+||.|++|.| .++....++..+.-.+
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L-~~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET-RNVIGDRGLEVLAQYC 341 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE-EGGGHHHHHHHHHHHC
T ss_pred HHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec-cCccCHHHHHHHHHhC
Confidence 344555778888888776444443334578999999999999887778788999999999999 7554323333333346
Q ss_pred CccceEEEEe----------ecCCCCCCCCcceEEEeCCceeEEEEEeccccce---ee-ccCCCeeEEEEEEEeecCCC
Q 010332 278 PTLKKLGIRF----------DIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY---MV-HELHSLTEAFIDVSYFEWPS 343 (513)
Q Consensus 278 ~~Lr~L~i~~----------~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~---~~-~~~p~L~~~~l~~~~~~~~~ 343 (513)
++|+.|.+.+ | ....+.....+.-.+|+|++|.+.+...... .+ ..+++|+.+.+.....
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~---- 415 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEE--GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR---- 415 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTT--CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC----
T ss_pred CCCCEEEeecCcccccccccc--CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC----
Confidence 8899999994 4 2111111122223579999999965543221 22 2488899988864320
Q ss_pred CCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEE
Q 010332 344 PSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLL 423 (513)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~ 423 (513)
...+.+ .+....+..++.++++++.|.++.+.-.............+++|++|.+..+.....++..+++.||+|+.|+
T Consensus 416 ~n~l~~-~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 416 EERITD-LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp CSCCSS-CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred CccccC-chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence 001100 0223456677788999999999642211000011111124778999999877666678888999999999999
Q ss_pred EEecccCCCCCccccCccccccccccEEEEEEecCcHHHHHHHHHHHhcccCcCcEEEE
Q 010332 424 IHSHAVRDSGFIFEEPVPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVK 482 (513)
Q Consensus 424 i~~~~~~~~~~~w~~~~~~c~~~~Lk~v~i~~f~g~~~e~~l~~~lL~~a~~Le~~~i~ 482 (513)
|..+...+....+. .. ...+|+.+.+.+-.-+... ++.+.+..|.|.-..|.
T Consensus 495 l~~n~l~~~~~~~~--~~--~l~~L~~L~ls~n~it~~~---~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 495 MRGCCFSERAIAAA--VT--KLPSLRYLWVQGYRASMTG---QDLMQMARPYWNIELIP 546 (592)
T ss_dssp EESCCCBHHHHHHH--HH--HCSSCCEEEEESCBCCTTC---TTGGGGCCTTEEEEEEC
T ss_pred ccCCCCcHHHHHHH--HH--hcCccCeeECcCCcCCHHH---HHHHHHhCCCcEEEEec
Confidence 99876421110000 01 2377888888755422211 23344455555444443
No 7
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.96 E-value=9.5e-11 Score=125.33 Aligned_cols=238 Identities=14% Similarity=0.133 Sum_probs=150.9
Q ss_pred ccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEeec------CCCCCCCCcc
Q 010332 226 CFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDI------GDQGSSYNEH 299 (513)
Q Consensus 226 ~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~~~------~~~~~~~~~~ 299 (513)
.+++|++|+|+++.+++..+..++.+||.|++|.+ .+|..+.++..+.-..++|+.|.+..|. +....+....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l-~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEE-EGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeC-cCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 68999999999999888888888999999999999 8874322333333346899999996531 0111111111
Q ss_pred eEEEeCCceeEEEEEeccccce----eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcc
Q 010332 300 KILIRAPNLERFHIIDHALVSY----MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAE 375 (513)
Q Consensus 300 ~i~i~ap~L~~L~l~~~~~~~~----~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~ 375 (513)
.+.-.+|+|++|.+.+...... ....+|+|+.+++.+.... ....+.+ .+....+..++.++++++.|++++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~--~~~~l~~-~~~~~~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK--APDYLTL-EPLDIGFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT--CCCTTTC-CCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC--CcccccC-CchhhHHHHHHhhCCCccEEeecC-
Confidence 2222479999997766543221 1235889999988742200 0001100 012456677788899999999976
Q ss_pred hhhhhhhhccCCCC-CcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecccCCCCCccccCccccccccccEEEEE
Q 010332 376 TMFALDLAYEDFFP-TFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEPVPRCLLFHVKKIEMR 454 (513)
Q Consensus 376 ~~~~~~~~~~~~~p-~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~w~~~~~~c~~~~Lk~v~i~ 454 (513)
.+.. .....+. .+++|+.|++..+.....++..++..||+|+.|+|..+...+.. . .. ... ...+|+.+.+.
T Consensus 442 ~l~~---~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~-~-~~-~~~-~l~~L~~L~l~ 514 (594)
T 2p1m_B 442 LLTD---KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA-L-LA-NAS-KLETMRSLWMS 514 (594)
T ss_dssp SCCH---HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH-H-HH-TGG-GGGGSSEEEEE
T ss_pred cccH---HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH-H-HH-HHH-hCCCCCEEeee
Confidence 2221 1111111 47889999999887777788888899999999999987752111 0 00 111 23789999998
Q ss_pred EecCcHHHHHHHHHHHhcccCcCc
Q 010332 455 SFGGYEHEFQLVKYFLKNIVSLEK 478 (513)
Q Consensus 455 ~f~g~~~e~~l~~~lL~~a~~Le~ 478 (513)
+...... -++.+.+..|.|+.
T Consensus 515 ~~~~~~~---~~~~l~~~lp~l~i 535 (594)
T 2p1m_B 515 SCSVSFG---ACKLLGQKMPKLNV 535 (594)
T ss_dssp SSCCBHH---HHHHHHHHCTTEEE
T ss_pred CCCCCHH---HHHHHHHhCCCCEE
Confidence 7766433 33445566666643
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.93 E-value=2.8e-10 Score=112.49 Aligned_cols=228 Identities=13% Similarity=0.090 Sum_probs=141.0
Q ss_pred CcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEE
Q 010332 205 TTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLG 284 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~ 284 (513)
..++.|+|.++.+..+|+....+++|++|+|+++.+.. +..-+..++.|++|+| .++.. ..+...--..++|+.|.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~L-s~n~l-~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTL-ARNPL-RALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEE-ESCCC-CCCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEEC-CCCcc-ccCcHHHhcCcCCCEEE
Confidence 67999999999999887667789999999999988863 3334678999999999 88754 22211111235677777
Q ss_pred EEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCC
Q 010332 285 IRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGV 364 (513)
Q Consensus 285 i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 364 (513)
+.+| ... ..+ ...+....+.+ .+..+++|+.+++...... .+...+..+
T Consensus 157 L~~n--~~~-----~~~---p~~~~~~~~~~------~~~~l~~L~~L~L~~n~l~---------------~lp~~l~~l 205 (328)
T 4fcg_A 157 IRAC--PEL-----TEL---PEPLASTDASG------EHQGLVNLQSLRLEWTGIR---------------SLPASIANL 205 (328)
T ss_dssp EEEE--TTC-----CCC---CSCSEEEC-CC------CEEESTTCCEEEEEEECCC---------------CCCGGGGGC
T ss_pred CCCC--CCc-----ccc---ChhHhhccchh------hhccCCCCCEEECcCCCcC---------------cchHhhcCC
Confidence 7776 211 000 00111111111 1345888999988765511 122336778
Q ss_pred CcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecccCCCCCccccCccccc
Q 010332 365 NEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEPVPRCL 444 (513)
Q Consensus 365 ~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~w~~~~~~c~ 444 (513)
++++.|.++.+.+.. +.+ .+..+++|++|++..+... ..++..+..+++|+.|+|..+........+ . ..
T Consensus 206 ~~L~~L~L~~N~l~~---l~~-~l~~l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~---~--~~ 275 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSA---LGP-AIHHLPKLEELDLRGCTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLD---I--HR 275 (328)
T ss_dssp TTCCEEEEESSCCCC---CCG-GGGGCTTCCEEECTTCTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTT---G--GG
T ss_pred CCCCEEEccCCCCCc---Cch-hhccCCCCCEEECcCCcch-hhhHHHhcCCCCCCEEECCCCCchhhcchh---h--hc
Confidence 999999999987764 222 3557889999999775321 112334678999999999886542211111 1 12
Q ss_pred cccccEEEEEE--ecCcHHHHHHHHHHHhcccCcCcEEEEe
Q 010332 445 LFHVKKIEMRS--FGGYEHEFQLVKYFLKNIVSLEKLIVKS 483 (513)
Q Consensus 445 ~~~Lk~v~i~~--f~g~~~e~~l~~~lL~~a~~Le~~~i~~ 483 (513)
..+|+.+.+.+ +.|...+ -+.+.+.|+.+.+..
T Consensus 276 l~~L~~L~L~~n~~~~~iP~------~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPS------LIAQLPANCIILVPP 310 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCG------GGGGSCTTCEEECCG
T ss_pred CCCCCEEeCCCCCchhhccH------HHhhccCceEEeCCH
Confidence 47788888763 2232111 134666677666553
No 9
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.91 E-value=1.2e-10 Score=113.88 Aligned_cols=249 Identities=13% Similarity=0.096 Sum_probs=159.1
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCc-chHHHHhhcCCccceeEeeeeeeccCCce
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPN-NLTERLFSACPVLEELSIVGLLVNADVVT 271 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~-~~l~~lls~cp~Le~L~L~~~c~~~~~~~ 271 (513)
...+|..++ ++|++|+|.++.+..+++.. ..+++|+.|+|.++.+.. +.....+.+++.|++|+| .++.. ..+.
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L-s~n~i-~~l~ 94 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL-SFNGV-ITMS 94 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC-CSCSE-EEEE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC-CCCcc-ccCh
Confidence 445666443 68999999999998876543 589999999999988764 222234567999999999 87754 2222
Q ss_pred eEEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccce---eeccCCCeeEEEEEEEeecCCCCCccC
Q 010332 272 NFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY---MVHELHSLTEAFIDVSYFEWPSPSYVE 348 (513)
Q Consensus 272 ~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~ 348 (513)
......++|+.|.+.++ .... ..........++|++|.++++..... .+..+++|+.+++....
T Consensus 95 ~~~~~l~~L~~L~l~~n--~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---------- 161 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHS--NLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS---------- 161 (306)
T ss_dssp EEEETCTTCCEEECTTS--EEES-STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE----------
T ss_pred hhcCCCCCCCEEECCCC--cccc-cccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc----------
Confidence 22233578999998765 1100 00001122458899999988754322 35567889888874332
Q ss_pred CCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEec
Q 010332 349 RPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSH 427 (513)
Q Consensus 349 ~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~ 427 (513)
.........+..+++++.|+++.+.+.. +.+..+..+++|++|++..+.. +.. ...+..+|+|+.|++..+
T Consensus 162 ---l~~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 162 ---FQENFLPDIFTELRNLTFLDLSQCQLEQ---LSPTAFNSLSSLQVLNMSHNNFFSLD--TFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp ---EGGGEECSCCTTCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCSBCC--SGGGTTCTTCCEEECTTS
T ss_pred ---cccccchhHHhhCcCCCEEECCCCCcCC---cCHHHhcCCCCCCEEECCCCccCccC--hhhccCcccCCEeECCCC
Confidence 1111123346678999999999887665 4455566788999999976532 111 012577899999999887
Q ss_pred ccCCCCCccccCccccccccccEEEEE--EecCcHHHHHHHHHHHh
Q 010332 428 AVRDSGFIFEEPVPRCLLFHVKKIEMR--SFGGYEHEFQLVKYFLK 471 (513)
Q Consensus 428 ~~~~~~~~w~~~~~~c~~~~Lk~v~i~--~f~g~~~e~~l~~~lL~ 471 (513)
........... ....+|+.+.+. .+.+......|.+++-+
T Consensus 234 ~l~~~~~~~~~----~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~ 275 (306)
T 2z66_A 234 HIMTSKKQELQ----HFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275 (306)
T ss_dssp CCCBCSSSSCC----CCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred CCcccCHHHHH----hhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence 64321111111 112578888886 56676665667777643
No 10
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.83 E-value=6.3e-11 Score=117.32 Aligned_cols=204 Identities=14% Similarity=0.117 Sum_probs=145.7
Q ss_pred CcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCC-ceeEEEecCccceE
Q 010332 205 TTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADV-VTNFNISSPTLKKL 283 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~-~~~l~i~~~~Lr~L 283 (513)
+.++.|++.++.+...++....+++|+.|+|+++.+.+..+..++.+||.|++|+| .+|...+. ...+ -..++|+.|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L-~~~~l~~~~~~~l-~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL-EGLRLSDPIVNTL-AKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC-TTCBCCHHHHHHH-TTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC-cCcccCHHHHHHH-hcCCCCCEE
Confidence 78999999999988876666789999999999999987778889999999999999 88864111 1111 125899999
Q ss_pred EEEeecCCCCCCCCcceEEEeCCceeEEEEEec-cccc----eeeccCC-CeeEEEEEEEeecCCCCCccCCCCchhhHH
Q 010332 284 GIRFDIGDQGSSYNEHKILIRAPNLERFHIIDH-ALVS----YMVHELH-SLTEAFIDVSYFEWPSPSYVERPLPQAKRV 357 (513)
Q Consensus 284 ~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~-~~~~----~~~~~~p-~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 357 (513)
.+.+| ....+.....+.-..|+|++|.+.++ .... ..+..+| +|+.+++..+... .....+
T Consensus 148 ~L~~~--~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~-----------~~~~~l 214 (336)
T 2ast_B 148 NLSGC--SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-----------LQKSDL 214 (336)
T ss_dssp ECTTC--BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG-----------SCHHHH
T ss_pred ECCCC--CCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc-----------CCHHHH
Confidence 99887 21110012222336799999999998 4432 2356788 9999988644200 233566
Q ss_pred HHHccCCCcceEEEEEcch-hhhhhhhccCCCCCcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEec
Q 010332 358 LELLEGVNEIKFMSLSAET-MFALDLAYEDFFPTFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSH 427 (513)
Q Consensus 358 ~~~l~~l~~l~~L~l~~~~-~~~~~~~~~~~~p~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~ 427 (513)
...+..+++++.|+++.+. +.. .....+..+++|++|++..+.. ...++ ..+..+|+|+.|+|.++
T Consensus 215 ~~~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 215 STLVRRCPNLVHLDLSDSVMLKN---DCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHCTTCSEEECTTCTTCCG---GGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred HHHHhhCCCCCEEeCCCCCcCCH---HHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence 7778889999999999876 322 2222345779999999988743 22233 34578999999999876
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.82 E-value=7.7e-10 Score=109.99 Aligned_cols=236 Identities=12% Similarity=0.121 Sum_probs=132.3
Q ss_pred CcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCcc
Q 010332 201 LCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTL 280 (513)
Q Consensus 201 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~L 280 (513)
+..+++|++|+|++|.+..+ +....+++|++|+|+++.+.+-. . +..++.|+.|.+ ..|.....+.. ....++|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~l-~~n~~~~~~~~-~~~l~~L 157 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDNISDIS--P-LANLTKMYSLNL-GANHNLSDLSP-LSNMTGL 157 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEEEC-TTCTTCCCCGG-GTTCTTC
T ss_pred hhcCCcCCEEEccCCcccCc-hHHcCCCcCCEEECcCCcccCch--h-hccCCceeEEEC-CCCCCcccccc-hhhCCCC
Confidence 55677888888888877664 44556788888888877776511 1 667888888888 76632111111 1123567
Q ss_pred ceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccce-eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHH
Q 010332 281 KKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY-MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLE 359 (513)
Q Consensus 281 r~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (513)
+.|.+.++ ... .... .-..++|++|.+.++..... .+..+++|+.+.+..... .....
T Consensus 158 ~~L~l~~~--~~~---~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l------------~~~~~--- 216 (347)
T 4fmz_A 158 NYLTVTES--KVK---DVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQI------------TDITP--- 216 (347)
T ss_dssp CEEECCSS--CCC---CCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCC------------CCCGG---
T ss_pred cEEEecCC--CcC---Cchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCC------------CCCch---
Confidence 77777766 211 1111 22557788887777654322 255666777666643220 00000
Q ss_pred HccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEecccCCCCCcccc
Q 010332 360 LLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEE 438 (513)
Q Consensus 360 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~w~~ 438 (513)
+..+++++.|.++.+.+.. ..+ +..+++|++|++..+.. .. ..+..+|+|+.|.+..+......
T Consensus 217 -~~~~~~L~~L~l~~n~l~~---~~~--~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n~l~~~~----- 281 (347)
T 4fmz_A 217 -VANMTRLNSLKIGNNKITD---LSP--LANLSQLTWLEIGTNQISDI----NAVKDLTKLKMLNVGSNQISDIS----- 281 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCCCCG-----
T ss_pred -hhcCCcCCEEEccCCccCC---Ccc--hhcCCCCCEEECCCCccCCC----hhHhcCCCcCEEEccCCccCCCh-----
Confidence 5566777888777765544 222 44667777777766532 21 23567778888877765443211
Q ss_pred CccccccccccEEEEEEecCcHHHHHHHHHHHhcccCcCcEEEEec
Q 010332 439 PVPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKSW 484 (513)
Q Consensus 439 ~~~~c~~~~Lk~v~i~~f~g~~~e~~l~~~lL~~a~~Le~~~i~~~ 484 (513)
.. ....+|+.+.+.+-.-.... .-.+.+.+.|+.+.+...
T Consensus 282 ~~--~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 282 VL--NNLSQLNSLFLNNNQLGNED----MEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp GG--GGCTTCSEEECCSSCCCGGG----HHHHHTCTTCSEEECCSS
T ss_pred hh--cCCCCCCEEECcCCcCCCcC----hhHhhccccCCEEEccCC
Confidence 01 12366777776533221111 112345677777776653
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.81 E-value=9.8e-10 Score=109.25 Aligned_cols=253 Identities=14% Similarity=0.129 Sum_probs=169.5
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTER 247 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~ 247 (513)
.+++.|++. .. . ...+|. +..+++|++|+|.+|.+..+++ ...+++|++|+|.++.+.+ +.
T Consensus 44 ~~L~~L~l~----------~~-~---i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~--~~- 104 (347)
T 4fmz_A 44 ESITKLVVA----------GE-K---VASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD--IS- 104 (347)
T ss_dssp TTCSEEECC----------SS-C---CCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--CG-
T ss_pred ccccEEEEe----------CC-c---cccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC--ch-
Confidence 578888876 11 0 234443 5668999999999999887644 6689999999999998876 22
Q ss_pred HhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccce-eeccC
Q 010332 248 LFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY-MVHEL 326 (513)
Q Consensus 248 lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~-~~~~~ 326 (513)
-+..|+.|++|++ .+|.. ..+.. ....++|+.|.+.++ ... ..... ....++|++|.+.++..... .+..+
T Consensus 105 ~~~~l~~L~~L~l-~~n~i-~~~~~-~~~l~~L~~L~l~~n--~~~--~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l 176 (347)
T 4fmz_A 105 ALQNLTNLRELYL-NEDNI-SDISP-LANLTKMYSLNLGAN--HNL--SDLSP-LSNMTGLNYLTVTESKVKDVTPIANL 176 (347)
T ss_dssp GGTTCTTCSEEEC-TTSCC-CCCGG-GTTCTTCCEEECTTC--TTC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred HHcCCCcCCEEEC-cCCcc-cCchh-hccCCceeEEECCCC--CCc--ccccc-hhhCCCCcEEEecCCCcCCchhhccC
Confidence 2789999999999 88765 33332 123468999999877 221 11111 23678999999998764332 36788
Q ss_pred CCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccC-C
Q 010332 327 HSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGT-S 405 (513)
Q Consensus 327 p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~-~ 405 (513)
++|+.+++..... .... .+..+++++.|.++...+.. ... +..+++|++|++..+.. .
T Consensus 177 ~~L~~L~l~~n~l------------~~~~----~~~~l~~L~~L~l~~n~l~~---~~~--~~~~~~L~~L~l~~n~l~~ 235 (347)
T 4fmz_A 177 TDLYSLSLNYNQI------------EDIS----PLASLTSLHYFTAYVNQITD---ITP--VANMTRLNSLKIGNNKITD 235 (347)
T ss_dssp TTCSEEECTTSCC------------CCCG----GGGGCTTCCEEECCSSCCCC---CGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCCEEEccCCcc------------cccc----cccCCCccceeecccCCCCC---Cch--hhcCCcCCEEEccCCccCC
Confidence 8999988753320 0011 16678999999998876654 222 45788999999977643 2
Q ss_pred HHHHHHHHhcCCCcceEEEEecccCCCCCccccCccccccccccEEEEEEecCcHHHHHHHHHHHhcccCcCcEEEEecc
Q 010332 406 WKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEPVPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKSWA 485 (513)
Q Consensus 406 ~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~w~~~~~~c~~~~Lk~v~i~~f~g~~~e~~l~~~lL~~a~~Le~~~i~~~~ 485 (513)
... +..+|+|+.|++..+....... . ....+|+.+.+.+-.-.. + . .+...+.|+.+.+....
T Consensus 236 ~~~----~~~l~~L~~L~l~~n~l~~~~~-----~--~~l~~L~~L~l~~n~l~~--~---~-~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 236 LSP----LANLSQLTWLEIGTNQISDINA-----V--KDLTKLKMLNVGSNQISD--I---S-VLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CGG----GTTCTTCCEEECCSSCCCCCGG-----G--TTCTTCCEEECCSSCCCC--C---G-GGGGCTTCSEEECCSSC
T ss_pred Ccc----hhcCCCCCEEECCCCccCCChh-----H--hcCCCcCEEEccCCccCC--C---h-hhcCCCCCCEEECcCCc
Confidence 222 7899999999998876543211 1 124678888886322111 1 1 24678899999887643
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.80 E-value=2.9e-10 Score=117.63 Aligned_cols=126 Identities=17% Similarity=0.099 Sum_probs=63.3
Q ss_pred CCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEE-e
Q 010332 199 ESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNI-S 276 (513)
Q Consensus 199 ~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i-~ 276 (513)
..+..+++|+.|+|+++.+..+++. ..++++|+.|+|+++.+.. .....+..++.|++|+| .++.. ..+....+ .
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L-~~N~l-~~~~~~~~~~ 169 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWL-RNNPI-ESIPSYAFNR 169 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEEC-CSCCC-CEECTTTTTT
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCCCEEEC-CCCCc-ceeCHhHHhc
Confidence 3444567777777777766665433 2457777777777766653 11223556677777777 65533 11110001 1
Q ss_pred cCccceEEEEeecCCCCCCCCcceEE----EeCCceeEEEEEeccccce-eeccCCCeeEEEE
Q 010332 277 SPTLKKLGIRFDIGDQGSSYNEHKIL----IRAPNLERFHIIDHALVSY-MVHELHSLTEAFI 334 (513)
Q Consensus 277 ~~~Lr~L~i~~~~~~~~~~~~~~~i~----i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l 334 (513)
.++|+.|.+.++ .....+. -..++|++|.++++....+ .+..+++|+.+++
T Consensus 170 l~~L~~L~l~~~-------~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 170 VPSLMRLDLGEL-------KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM 225 (452)
T ss_dssp CTTCCEEECCCC-------TTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEEC
T ss_pred CCcccEEeCCCC-------CCccccChhhccCCCCCCEEECCCCcccccccccccccccEEEC
Confidence 245666666654 1111111 1345566666655533221 2334455555544
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.79 E-value=1.1e-08 Score=101.91 Aligned_cols=187 Identities=13% Similarity=0.136 Sum_probs=108.0
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCcee
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTN 272 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~ 272 (513)
...+|..++ ++|++|+|+++.+..+++ ....+++|++|+|.++.+.+ .....+.+++.|++|+| .++.. ..+..
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L-s~n~l-~~~~~ 117 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDL-SYNYL-SNLSS 117 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEC-CSSCC-SSCCH
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEEC-CCCcC-CcCCH
Confidence 456676554 589999999999887755 34679999999999887765 11223678899999999 77754 22211
Q ss_pred EEE-ecCccceEEEEeecCCCCCCCCcce--EEEeCCceeEEEEEecc-ccceeeccCCCeeEEEEEEEeecCCCCCccC
Q 010332 273 FNI-SSPTLKKLGIRFDIGDQGSSYNEHK--ILIRAPNLERFHIIDHA-LVSYMVHELHSLTEAFIDVSYFEWPSPSYVE 348 (513)
Q Consensus 273 l~i-~~~~Lr~L~i~~~~~~~~~~~~~~~--i~i~ap~L~~L~l~~~~-~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~ 348 (513)
-.+ ..++|+.|.+.++ ... .... ..-..++|++|.+.++. ....
T Consensus 118 ~~~~~l~~L~~L~L~~n--~l~---~l~~~~~~~~l~~L~~L~l~~n~~~~~~--------------------------- 165 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGN--PYK---TLGETSLFSHLTKLQILRVGNMDTFTKI--------------------------- 165 (353)
T ss_dssp HHHTTCTTCSEEECTTC--CCS---SSCSSCSCTTCTTCCEEEEEESSSCCEE---------------------------
T ss_pred hHhCCCccCCEEECCCC--CCc---ccCchhhhccCCCCcEEECCCCcccccc---------------------------
Confidence 111 1356777777655 210 1100 11234566666665542 1111
Q ss_pred CCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecc
Q 010332 349 RPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHA 428 (513)
Q Consensus 349 ~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~ 428 (513)
....+.++++++.|.++.+.+.. ..+..+..+++|++|++..+.... .-..++..+++|+.|++....
T Consensus 166 --------~~~~~~~l~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 166 --------QRKDFAGLTFLEELEIDASDLQS---YEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp --------CTTTTTTCCEEEEEEEEETTCCE---ECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCB
T ss_pred --------CHHHccCCCCCCEEECCCCCcCc---cCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCc
Confidence 01123445666777776655543 333445566677777776654311 112344557777777777654
Q ss_pred c
Q 010332 429 V 429 (513)
Q Consensus 429 ~ 429 (513)
.
T Consensus 234 l 234 (353)
T 2z80_A 234 L 234 (353)
T ss_dssp C
T ss_pred c
Confidence 3
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.79 E-value=3.4e-09 Score=109.93 Aligned_cols=99 Identities=14% Similarity=0.215 Sum_probs=51.9
Q ss_pred ccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEecccCCCCCccccC
Q 010332 361 LEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEP 439 (513)
Q Consensus 361 l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~w~~~ 439 (513)
+..+++++.|+++.+.+.. ..+ +..+++|++|++..+.. .... +..+++|+.|++..+......
T Consensus 239 l~~l~~L~~L~l~~n~l~~---~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~------ 303 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISN---LAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDIS------ 303 (466)
T ss_dssp GGGCTTCSEEECCSSCCCC---CGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCG------
T ss_pred hhcCCCCCEEECCCCcccc---chh--hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCch------
Confidence 3445566666666554433 111 33556666666655432 1111 456667777766654432111
Q ss_pred ccccccccccEEEEEE--ecCcHHHHHHHHHHHhcccCcCcEEEEe
Q 010332 440 VPRCLLFHVKKIEMRS--FGGYEHEFQLVKYFLKNIVSLEKLIVKS 483 (513)
Q Consensus 440 ~~~c~~~~Lk~v~i~~--f~g~~~e~~l~~~lL~~a~~Le~~~i~~ 483 (513)
+-....+|+.+.+.+ +.+... +...+.|+.+.+..
T Consensus 304 -~~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 304 -PISNLKNLTYLTLYFNNISDISP--------VSSLTKLQRLFFYN 340 (466)
T ss_dssp -GGGGCTTCSEEECCSSCCSCCGG--------GGGCTTCCEEECCS
T ss_pred -hhcCCCCCCEEECcCCcCCCchh--------hccCccCCEeECCC
Confidence 112346788877762 233221 45778888888764
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.78 E-value=3.3e-09 Score=110.05 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=52.0
Q ss_pred cCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEecccCCCCCccccCc
Q 010332 362 EGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEPV 440 (513)
Q Consensus 362 ~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~w~~~~ 440 (513)
..+++++.|.++.+.+.. + ..+..+++|++|++..+.. .... +..+++|+.|.+..+......
T Consensus 218 ~~l~~L~~L~l~~n~l~~---~--~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~------- 281 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKD---I--GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNIS------- 281 (466)
T ss_dssp GGCTTCCEEECCSSCCCC---C--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCG-------
T ss_pred cccCCCCEEECCCCCccc---c--hhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccCccc-------
Confidence 345556666655544332 1 1133456666666655432 1111 456667777766654432211
Q ss_pred cccccccccEEEEEEe--cCcHHHHHHHHHHHhcccCcCcEEEEecc
Q 010332 441 PRCLLFHVKKIEMRSF--GGYEHEFQLVKYFLKNIVSLEKLIVKSWA 485 (513)
Q Consensus 441 ~~c~~~~Lk~v~i~~f--~g~~~e~~l~~~lL~~a~~Le~~~i~~~~ 485 (513)
+-....+|+.+.+.+- .+... +.+.+.|+.+.+....
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 282 PLAGLTALTNLELNENQLEDISP--------ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp GGTTCTTCSEEECCSSCCSCCGG--------GGGCTTCSEEECCSSC
T ss_pred cccCCCccCeEEcCCCcccCchh--------hcCCCCCCEEECcCCc
Confidence 1112467888877632 22221 5678889988887543
No 17
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.74 E-value=4.5e-10 Score=115.75 Aligned_cols=203 Identities=15% Similarity=0.134 Sum_probs=101.4
Q ss_pred CCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEE-e
Q 010332 199 ESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNI-S 276 (513)
Q Consensus 199 ~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i-~ 276 (513)
..+..+++|++|+|+++.+..+++. ..++++|++|+|.++.+.. .....+..++.|++|+| .++.. ..+....+ .
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L-~~N~i-~~~~~~~~~~ 158 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWL-RNNPI-ESIPSYAFNR 158 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-CCTTTSCSCSSCCEEEC-CSCCC-CEECTTTTTT
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-eCHhHhhccccCceeeC-CCCcc-cccCHHHhhh
Confidence 3444567777777777776665433 2357777777777776654 11123566777777777 65533 11111001 1
Q ss_pred cCccceEEEEeecCCCCCCCCcceEE----EeCCceeEEEEEeccccce-eeccCCCeeEEEEEEEeecCCCCCccCCCC
Q 010332 277 SPTLKKLGIRFDIGDQGSSYNEHKIL----IRAPNLERFHIIDHALVSY-MVHELHSLTEAFIDVSYFEWPSPSYVERPL 351 (513)
Q Consensus 277 ~~~Lr~L~i~~~~~~~~~~~~~~~i~----i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~ 351 (513)
.++|+.|.+.++ .....+. -..++|++|.+.++....+ .+..+++|+.+++.....
T Consensus 159 l~~L~~L~l~~~-------~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l------------ 219 (440)
T 3zyj_A 159 IPSLRRLDLGEL-------KRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL------------ 219 (440)
T ss_dssp CTTCCEEECCCC-------TTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC------------
T ss_pred CcccCEeCCCCC-------CCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc------------
Confidence 356777777654 1111111 1346677777666543222 234555666665532210
Q ss_pred chhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEeccc
Q 010332 352 PQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 352 ~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
.......+.++++++.|.++.+.+.. +.+..+..+++|++|+|..+... ......+..+++|+.|+|...++
T Consensus 220 --~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 220 --SAIRPGSFQGLMHLQKLWMIQSQIQV---IERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp --CEECTTTTTTCTTCCEEECTTCCCCE---ECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCE
T ss_pred --CccChhhhccCccCCEEECCCCceeE---EChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCc
Confidence 00011234455666666666655544 33334445566666666444211 00012234556666666665443
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.73 E-value=9.7e-10 Score=108.60 Aligned_cols=203 Identities=18% Similarity=0.122 Sum_probs=96.4
Q ss_pred CcCCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEE-EecC
Q 010332 201 LCTSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFN-ISSP 278 (513)
Q Consensus 201 l~~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~-i~~~ 278 (513)
+..+++|++|+|+++.+..+.| ....+++|++|+|+++.+.. +. ..-.+.|++|.+ .++.. ..+..-. -..+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~--~~~~~~L~~L~l-~~n~l-~~~~~~~~~~l~ 145 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LP--EKMPKTLQELRV-HENEI-TKVRKSVFNGLN 145 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CC--SSCCTTCCEEEC-CSSCC-CBBCHHHHTTCT
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cC--hhhcccccEEEC-CCCcc-cccCHhHhcCCc
Confidence 3445666666666666555433 23355666666666655543 00 011255666666 54432 1111000 1124
Q ss_pred ccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHH
Q 010332 279 TLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVL 358 (513)
Q Consensus 279 ~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 358 (513)
+|+.|.+.++ ............-..++|++|.+.++....+...-.++|+.+++..... .....
T Consensus 146 ~L~~L~l~~n--~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l--------------~~~~~ 209 (330)
T 1xku_A 146 QMIVVELGTN--PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKI--------------TKVDA 209 (330)
T ss_dssp TCCEEECCSS--CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCC--------------CEECT
T ss_pred cccEEECCCC--cCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcC--------------CccCH
Confidence 5555555544 1100000000011345666666665543333222234555555422110 00011
Q ss_pred HHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecccC
Q 010332 359 ELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVR 430 (513)
Q Consensus 359 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~ 430 (513)
..+..+++++.|.++.+.+.. +.+..+..+++|++|++..+... .++.-+..+|+|+.|++..+...
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISA---VDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCE---ECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCCEEECCCCcCce---eChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCCcCC
Confidence 234566777878777766554 33334456677777777665322 22333567778888888765543
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.73 E-value=2.5e-09 Score=111.20 Aligned_cols=204 Identities=17% Similarity=0.122 Sum_probs=116.8
Q ss_pred CCCCcCCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEE-
Q 010332 198 PESLCTSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNI- 275 (513)
Q Consensus 198 p~~l~~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i- 275 (513)
|..+..+++|++|+|.++.+..+++ ...++++|+.|+|.++.+.+ .....+.+++.|+.|.| .++.. ..+....+
T Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l-~~n~i-~~~~~~~~~ 197 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRL-RHLNI-NAIRDYSFK 197 (477)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEE-ESCCC-CEECTTCSC
T ss_pred hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeC-CCCcC-cEeChhhcc
Confidence 3444556777777777777665533 33467778888887776654 22334677788888888 66543 21111111
Q ss_pred ecCccceEEEEeecCCCCCCCCcceE---EEeCCceeEEEEEecccccee---eccCCCeeEEEEEEEeecCCCCCccCC
Q 010332 276 SSPTLKKLGIRFDIGDQGSSYNEHKI---LIRAPNLERFHIIDHALVSYM---VHELHSLTEAFIDVSYFEWPSPSYVER 349 (513)
Q Consensus 276 ~~~~Lr~L~i~~~~~~~~~~~~~~~i---~i~ap~L~~L~l~~~~~~~~~---~~~~p~L~~~~l~~~~~~~~~~~~~~~ 349 (513)
..++|+.|.+.++ .. ...+ ....++|++|.+.++....+. +..+++|+.+++.....
T Consensus 198 ~l~~L~~L~l~~~--~~-----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---------- 260 (477)
T 2id5_A 198 RLYRLKVLEISHW--PY-----LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI---------- 260 (477)
T ss_dssp SCTTCCEEEEECC--TT-----CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC----------
T ss_pred cCcccceeeCCCC--cc-----ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC----------
Confidence 2357778887765 21 1111 112347888888776543332 45677777777643220
Q ss_pred CCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEeccc
Q 010332 350 PLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 350 ~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
.......+..+++++.|.|+.+.+.. +.+..+..+++|+.|++..+.... .....+..+|+|+.|.|...+.
T Consensus 261 ----~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 261 ----STIEGSMLHELLRLQEIQLVGGQLAV---VEPYAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp ----CEECTTSCTTCTTCCEEECCSSCCSE---ECTTTBTTCTTCCEEECCSSCCSC-CCGGGBSCGGGCCEEECCSSCE
T ss_pred ----CccChhhccccccCCEEECCCCccce---ECHHHhcCcccCCEEECCCCcCce-eCHhHcCCCcccCEEEccCCCc
Confidence 00111234566778888877766554 444455667778888776653210 0112345677888888877553
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.69 E-value=7.6e-09 Score=107.55 Aligned_cols=204 Identities=16% Similarity=0.115 Sum_probs=106.9
Q ss_pred CCCcCCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEE-Ee
Q 010332 199 ESLCTSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFN-IS 276 (513)
Q Consensus 199 ~~l~~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~-i~ 276 (513)
..+..+++|++|+|.++.+..+.+ ...++++|+.|+|.++.+.. .....+.+++.|++|+| .++.. ..+.... -.
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L-s~n~i-~~~~~~~~~~ 126 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDI-SENKI-VILLDYMFQD 126 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCTTSSTTCTTCCEEEC-TTSCC-CEECTTTTTT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc-cCcccccCCCCCCEEEC-CCCcc-ccCChhHccc
Confidence 345557778888888777766544 33467788888887776654 11123567788888888 66543 1110000 11
Q ss_pred cCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccce---eeccCCCeeEEEEEEEeecCCCCCccCCCCch
Q 010332 277 SPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY---MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQ 353 (513)
Q Consensus 277 ~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~ 353 (513)
.++|+.|.+.++ .... ... ...-..++|++|.+.++..... .+..+++|+.+++......
T Consensus 127 l~~L~~L~l~~n--~l~~-~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~------------- 189 (477)
T 2id5_A 127 LYNLKSLEVGDN--DLVY-ISH-RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN------------- 189 (477)
T ss_dssp CTTCCEEEECCT--TCCE-ECT-TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-------------
T ss_pred cccCCEEECCCC--ccce-eCh-hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-------------
Confidence 356777777665 1100 000 0011456777777777654332 2456677777766532200
Q ss_pred hhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHH-HHHHhcCCCcceEEEEecc
Q 010332 354 AKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLL-LAILNSLPNLEVLLIHSHA 428 (513)
Q Consensus 354 ~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l-~~lL~~~P~Le~L~i~~~~ 428 (513)
......+..+++++.|+++...... ..+.......+|++|++..+... .+ ...+..+++|+.|+|....
T Consensus 190 -~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 190 -AIRDYSFKRLYRLKVLEISHWPYLD---TMTPNCLYGLNLTSLSITHCNLT--AVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp -EECTTCSCSCTTCCEEEEECCTTCC---EECTTTTTTCCCSEEEEESSCCC--SCCHHHHTTCTTCCEEECCSSC
T ss_pred -EeChhhcccCcccceeeCCCCcccc---ccCcccccCccccEEECcCCccc--ccCHHHhcCccccCeeECCCCc
Confidence 0001224456677777777643322 11111112336777777665321 11 1235667777777776543
No 21
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.69 E-value=9.2e-09 Score=72.00 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=33.6
Q ss_pred CcccCCCChHHHHHHhcCCchhhhhhhhhhhhhhHHhh
Q 010332 26 EDRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVW 63 (513)
Q Consensus 26 ~D~is~LPd~iL~~Ils~Lp~kda~rts~lSrRWr~lw 63 (513)
.+.++.||+||+.+||++||.+|.++++.|||+|+.+.
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999864
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.68 E-value=7.8e-08 Score=101.62 Aligned_cols=223 Identities=14% Similarity=0.141 Sum_probs=150.8
Q ss_pred CCceEEEEEeecCCccceeeccCCCccccc-CCCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVEL-PESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLT 245 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l 245 (513)
..++.|++. +.. ...+ |..+..+++|++|+|+++.+..+++. ..++++|++|+|+++.+.+ ..
T Consensus 26 ~~L~~L~Ls----------~n~----l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~ 90 (549)
T 2z81_A 26 AAMKSLDLS----------FNK----ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LS 90 (549)
T ss_dssp TTCCEEECC----------SSC----CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CC
T ss_pred CCccEEECc----------CCc----cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cC
Confidence 578888886 211 2233 45667789999999999999887654 4589999999999998875 23
Q ss_pred HHHhhcCCccceeEeeeeeeccCCce--eEEEecCccceEEEEeecCCCCCCCCcceE----EEeCCceeEEEEEecccc
Q 010332 246 ERLFSACPVLEELSIVGLLVNADVVT--NFNISSPTLKKLGIRFDIGDQGSSYNEHKI----LIRAPNLERFHIIDHALV 319 (513)
Q Consensus 246 ~~lls~cp~Le~L~L~~~c~~~~~~~--~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i----~i~ap~L~~L~l~~~~~~ 319 (513)
...+.+++.|++|++ .++.. .++. ...-..++|+.|.+.++ .. ...+ .-..++|++|.+.++...
T Consensus 91 ~~~~~~l~~L~~L~L-s~n~l-~~~~~~~~~~~l~~L~~L~L~~n--~~-----~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 91 SSWFGPLSSLKYLNL-MGNPY-QTLGVTSLFPNLTNLQTLRIGNV--ET-----FSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp HHHHTTCTTCCEEEC-TTCCC-SSSCSSCSCTTCTTCCEEEEEES--SS-----CCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred HHHhccCCCCcEEEC-CCCcc-cccchhhhhhccCCccEEECCCC--cc-----ccccCHhhhhcccccCeeeccCCccc
Confidence 345789999999999 88764 2211 11123468999999987 21 1111 124689999999987654
Q ss_pred ce---eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCC-CCCcCccc
Q 010332 320 SY---MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDF-FPTFPNLT 395 (513)
Q Consensus 320 ~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~-~p~~~~Lk 395 (513)
.. .+..+++|+.+++.... .......++..+++++.|.++...+.... ..+.. ...+++|+
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~--------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~L~ 226 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSE--------------SAFLLEIFADILSSVRYLELRDTNLARFQ-FSPLPVDEVSSPMK 226 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSB--------------STTHHHHHHHSTTTBSEEEEESCBCTTCC-CCCCSSCCCCCCCC
T ss_pred ccChhhhhccccCceEecccCc--------------ccccchhhHhhcccccEEEccCCcccccc-ccccchhhhhhccc
Confidence 32 35567788888876443 11122233466899999999998766521 01111 23578899
Q ss_pred EEEEEeccC---CHHHHHHHHhcCCCcceEEEEeccc
Q 010332 396 YLEVHIGGT---SWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 396 ~L~l~~~~~---~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
+|.+..+.. ....+...++.+++|+.|.+..+..
T Consensus 227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 999987643 3346666678889999999987543
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.68 E-value=2.4e-09 Score=113.76 Aligned_cols=244 Identities=17% Similarity=0.158 Sum_probs=154.8
Q ss_pred cccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEE
Q 010332 195 VELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFN 274 (513)
Q Consensus 195 ~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~ 274 (513)
..+|..+..+ +|++|+|.+|.+..+|. ..+++|+.|++.++.+.... . ...+|.|++|++ .+|.. .+.....
T Consensus 295 ~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~-~--~~~~~~L~~L~l-~~n~l-~~~~~~~ 366 (570)
T 2z63_A 295 ERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAF-S--EVDLPSLEFLDL-SRNGL-SFKGCCS 366 (570)
T ss_dssp CSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBC-C--CCBCTTCCEEEC-CSSCC-BEEEEEE
T ss_pred hhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccc-c--cccCCCCCEEeC-cCCcc-Ccccccc
Confidence 3566666667 88888888888776533 47889999999888765411 1 168999999999 87753 2221111
Q ss_pred ---EecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccc----eeeccCCCeeEEEEEEEeecCCCCCcc
Q 010332 275 ---ISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVS----YMVHELHSLTEAFIDVSYFEWPSPSYV 347 (513)
Q Consensus 275 ---i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~~~~~~~~~~~ 347 (513)
...++|+.|.+.++ .. ..........++|++|.+.++.... ..+..+++|+.+++.....
T Consensus 367 ~~~~~~~~L~~L~l~~n--~l---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-------- 433 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFN--GV---ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-------- 433 (570)
T ss_dssp HHHHTCSCCCEEECCSC--SE---EEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC--------
T ss_pred ccccccCccCEEECCCC--cc---ccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc--------
Confidence 12478999999876 21 1111113367899999998865322 2356788999888743220
Q ss_pred CCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEec
Q 010332 348 ERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSH 427 (513)
Q Consensus 348 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 427 (513)
.......+.++++++.|.++.+.+... ..+..+..+++|+.|++..+.... ..+..+..+|+|+.|+|..+
T Consensus 434 ------~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~p~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 434 ------RVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp ------EECCTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSS
T ss_pred ------cccchhhhhcCCcCcEEECcCCcCccc--cchhhhhcccCCCEEECCCCcccc-CChhhhhcccCCCEEeCCCC
Confidence 011223466789999999998776520 234456678899999997653211 11234568899999999887
Q ss_pred ccCCCCCccccCccccccccccEEEEE--EecCcHHHHHHH-HHHHhcc
Q 010332 428 AVRDSGFIFEEPVPRCLLFHVKKIEMR--SFGGYEHEFQLV-KYFLKNI 473 (513)
Q Consensus 428 ~~~~~~~~w~~~~~~c~~~~Lk~v~i~--~f~g~~~e~~l~-~~lL~~a 473 (513)
......... . ....+|+.+.+. .+.|......++ .++-++.
T Consensus 505 ~l~~~~~~~---~--~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~ 548 (570)
T 2z63_A 505 QLKSVPDGI---F--DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 548 (570)
T ss_dssp CCSCCCTTT---T--TTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTG
T ss_pred cCCCCCHHH---h--hcccCCcEEEecCCcccCCCcchHHHHHHHHhcc
Confidence 654221100 1 123788888887 566776666666 6655443
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.67 E-value=8.4e-10 Score=118.40 Aligned_cols=60 Identities=23% Similarity=0.163 Sum_probs=33.2
Q ss_pred CCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeee
Q 010332 203 TSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLL 264 (513)
Q Consensus 203 ~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c 264 (513)
.+++|++|+|.++.+..+|.....+++|++|+|.++.+.+- ....+..+|.|++|.+ ..|
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l-~~n 335 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSI-KGN 335 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEEC-CSC
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEEC-CCC
Confidence 35666666666666655544444566666666666655431 1122455566666666 554
No 25
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.66 E-value=2e-09 Score=105.75 Aligned_cols=209 Identities=10% Similarity=0.113 Sum_probs=111.6
Q ss_pred CCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccce
Q 010332 204 STTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKK 282 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~ 282 (513)
+++|++|+|.++.+..+++. ...+++|+.|+|+++.+.+.. . +..++.|++|+| .+|.. ..+. ..++|+.
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~L-s~n~l----~~l~-~~~~L~~ 103 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDL-NNNYV----QELL-VGPSIET 103 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEEC-CSSEE----EEEE-ECTTCCE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEEC-cCCcc----cccc-CCCCcCE
Confidence 34566666666666554322 235666666666666554311 1 556666666666 55532 2222 2356666
Q ss_pred EEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccc---eeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHH
Q 010332 283 LGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVS---YMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLE 359 (513)
Q Consensus 283 L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (513)
|.+.++ . -........++|++|.++++.... ..+..+++|+.++++... ........
T Consensus 104 L~l~~n--~-----l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~~~~ 163 (317)
T 3o53_A 104 LHAANN--N-----ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-------------IDTVNFAE 163 (317)
T ss_dssp EECCSS--C-----CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-------------CCEEEGGG
T ss_pred EECCCC--c-----cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-------------CCcccHHH
Confidence 666654 1 111112234667777777654322 234556677776663222 01111122
Q ss_pred HccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecccCCCCCccccC
Q 010332 360 LLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEP 439 (513)
Q Consensus 360 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~w~~~ 439 (513)
+...+++++.|.++.+.+.. +.. ...+++|++|++..+... .+..-+..+|+|+.|++..+....-.. .
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~---~~~--~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~L~~N~l~~l~~----~ 232 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYD---VKG--QVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVLIEK----A 232 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCE---EEC--CCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTSCCCEECT----T
T ss_pred HhhccCcCCEEECCCCcCcc---ccc--ccccccCCEEECCCCcCC--cchhhhcccCcccEEECcCCcccchhh----H
Confidence 33456888888888876654 211 224778888888766432 111125678889999888765432110 0
Q ss_pred ccccccccccEEEEE
Q 010332 440 VPRCLLFHVKKIEMR 454 (513)
Q Consensus 440 ~~~c~~~~Lk~v~i~ 454 (513)
. ....+|+.+.+.
T Consensus 233 ~--~~l~~L~~L~l~ 245 (317)
T 3o53_A 233 L--RFSQNLEHFDLR 245 (317)
T ss_dssp C--CCCTTCCEEECT
T ss_pred h--hcCCCCCEEEcc
Confidence 1 123667777765
No 26
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.65 E-value=1.5e-09 Score=109.71 Aligned_cols=219 Identities=14% Similarity=0.126 Sum_probs=118.1
Q ss_pred cCCCCcCCCcccEEEEeeeeccccC---C-Cc-------cccCCcceEEeeeEEeCcc---hHHHHhhcCCccceeEeee
Q 010332 197 LPESLCTSTTLEVLVLYSDFVINIP---P-SG-------LCFPCLKFLHIEMYCLPNN---LTERLFSACPVLEELSIVG 262 (513)
Q Consensus 197 lp~~l~~~~~L~~L~L~~~~l~~~~---~-~~-------~~~~~Lk~L~L~~~~~~~~---~l~~lls~cp~Le~L~L~~ 262 (513)
++..+..+++|++|+|++|.+..+. | .. ..+++|++|+|+++.+.+. .+...+..|+.|+.|.| .
T Consensus 52 l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L-~ 130 (386)
T 2ca6_A 52 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL-H 130 (386)
T ss_dssp HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEEC-C
T ss_pred HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEEC-c
Confidence 3444556788888888887543221 1 11 3678889999988888763 35556788889999998 7
Q ss_pred eeeccCCceeEEEe-----c---------CccceEEEEeecCCCCCCCCcce---EEEeCCceeEEEEEeccccce----
Q 010332 263 LLVNADVVTNFNIS-----S---------PTLKKLGIRFDIGDQGSSYNEHK---ILIRAPNLERFHIIDHALVSY---- 321 (513)
Q Consensus 263 ~c~~~~~~~~l~i~-----~---------~~Lr~L~i~~~~~~~~~~~~~~~---i~i~ap~L~~L~l~~~~~~~~---- 321 (513)
+|.. .......+. . ++|+.|.+.++ ... +..... ..-..++|++|.++++.....
T Consensus 131 ~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n--~l~-~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~ 206 (386)
T 2ca6_A 131 NNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN--RLE-NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206 (386)
T ss_dssp SSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS--CCT-GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred CCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC--CCC-cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH
Confidence 7754 110000111 1 67888888766 211 001110 111456788888777643210
Q ss_pred ----eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhh-ccCCC--CCcCcc
Q 010332 322 ----MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLA-YEDFF--PTFPNL 394 (513)
Q Consensus 322 ----~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~-~~~~~--p~~~~L 394 (513)
.+..+++|+.+++...... + .....+...+..+++++.|.|+.+.+...... .+..+ ..+++|
T Consensus 207 l~~~~l~~~~~L~~L~Ls~n~l~--------~--~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L 276 (386)
T 2ca6_A 207 LLLEGLAYCQELKVLDLQDNTFT--------H--LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276 (386)
T ss_dssp HHHTTGGGCTTCCEEECCSSCCH--------H--HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC
T ss_pred HHHHHhhcCCCccEEECcCCCCC--------c--HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe
Confidence 3345666666665432200 0 01134445566667777777766554431000 01112 135667
Q ss_pred cEEEEEeccCCH---HHHHHHH-hcCCCcceEEEEecccC
Q 010332 395 TYLEVHIGGTSW---KLLLAIL-NSLPNLEVLLIHSHAVR 430 (513)
Q Consensus 395 k~L~l~~~~~~~---~~l~~lL-~~~P~Le~L~i~~~~~~ 430 (513)
++|+|..+.... ..++..+ .++|+|+.|.+..+...
T Consensus 277 ~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred EEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 777776654322 2344444 45677777777665543
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.65 E-value=5.2e-10 Score=115.57 Aligned_cols=67 Identities=13% Similarity=0.045 Sum_probs=34.0
Q ss_pred CCCCcCCCcccEEEEeeeecccc-CCC--ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 198 PESLCTSTTLEVLVLYSDFVINI-PPS--GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 198 p~~l~~~~~L~~L~L~~~~l~~~-~~~--~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
|..+..+++|++|+|.+|.+... +.. ...+++|++|+|+++.+.+..-..++.+++.|++|++ .++.
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L-~~n~ 165 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL-TFNK 165 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC-TTCC
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC-CCCc
Confidence 34444456666666666655431 111 2345666666666655544222223555666666666 5543
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.63 E-value=8.2e-09 Score=104.38 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=17.8
Q ss_pred ccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEe
Q 010332 361 LEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHI 401 (513)
Q Consensus 361 l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~ 401 (513)
+..+++++.|+++.+.+.. +.+..+..+++|++|.+..
T Consensus 244 l~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEK---IMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp GGGCTTCSEEECCSSCCCE---EESGGGTTCSSCCEEECCS
T ss_pred HcCCCCccEEECCCCcCCC---cChhHccccccCCEEECCC
Confidence 4445555555555554433 2222333444555555544
No 29
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.62 E-value=7.2e-09 Score=101.40 Aligned_cols=171 Identities=14% Similarity=0.136 Sum_probs=92.5
Q ss_pred CCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCc
Q 010332 200 SLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPT 279 (513)
Q Consensus 200 ~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~ 279 (513)
.+..+++|++|+|++|.+..+++ ...+++|+.|+|+++.+.+- . -+..++.|++|.+ .+|.. .++.. -...++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l-~~n~l-~~~~~-l~~l~~ 130 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDL-TSTQI-TDVTP-LAGLSN 130 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEEC-TTSCC-CCCGG-GTTCTT
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEEC-CCCCC-CCchh-hcCCCC
Confidence 34556777777777777766533 55677777777777776651 1 2566777777777 66654 22221 011245
Q ss_pred cceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHH
Q 010332 280 LKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLE 359 (513)
Q Consensus 280 Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (513)
|+.|.+.++ ... .... .-..++|++|.++++..... ..
T Consensus 131 L~~L~l~~n--~l~---~~~~-l~~l~~L~~L~l~~n~l~~~------------------------------------~~ 168 (308)
T 1h6u_A 131 LQVLYLDLN--QIT---NISP-LAGLTNLQYLSIGNAQVSDL------------------------------------TP 168 (308)
T ss_dssp CCEEECCSS--CCC---CCGG-GGGCTTCCEEECCSSCCCCC------------------------------------GG
T ss_pred CCEEECCCC--ccC---cCcc-ccCCCCccEEEccCCcCCCC------------------------------------hh
Confidence 566665554 110 0000 11334445554444322110 00
Q ss_pred HccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEeccc
Q 010332 360 LLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 360 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
+..+++++.|.++.+.+.. +.+ +..+++|++|++..+.. +... +..+|+|+.|.+.....
T Consensus 169 -l~~l~~L~~L~l~~n~l~~---~~~--l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISD---ISP--LASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCC---CGG--GGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEEE
T ss_pred -hcCCCCCCEEECCCCccCc---Chh--hcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCee
Confidence 4556677777776665543 221 34566677777755532 1111 56777777777777553
No 30
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.62 E-value=2.8e-09 Score=102.94 Aligned_cols=200 Identities=16% Similarity=0.144 Sum_probs=96.7
Q ss_pred CcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee-ccCCceeEEE-ecCccc
Q 010332 205 TTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV-NADVVTNFNI-SSPTLK 281 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~-~~~~~~~l~i-~~~~Lr 281 (513)
++|++|+|.++.+..+++. ...+++|++|+|.++.+.+- ....+.+++.|++|+| .++. . ..+..-.+ ..++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l-~~n~~l-~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDL-SDNAQL-RSVDPATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEEC-CSCTTC-CCCCTTTTTTCTTCC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeC-CCCCCc-cccCHHHhcCCcCCC
Confidence 4566666666655554332 23556666666665554431 1122455566666666 5542 1 11100001 124555
Q ss_pred eEEEEeecCCCCCCCCcceEEEeCCceeEEEEEecccccee---eccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHH
Q 010332 282 KLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYM---VHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVL 358 (513)
Q Consensus 282 ~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~---~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 358 (513)
.|.+.++ ... .......-..++|++|.+.++...... +..+++|+.+++..... .....
T Consensus 109 ~L~l~~n--~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------------~~~~~ 170 (285)
T 1ozn_A 109 TLHLDRC--GLQ--ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI--------------SSVPE 170 (285)
T ss_dssp EEECTTS--CCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--------------CEECT
T ss_pred EEECCCC--cCC--EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc--------------cccCH
Confidence 5555544 110 000000113456666666665432221 34455666655532210 00001
Q ss_pred HHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEeccc
Q 010332 359 ELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 359 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
..+..+++++.|.++.+.+.. +.+..+..+++|++|++..+.... .....+..+|+|+.|+|...+.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAH---VHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCE
T ss_pred HHhcCccccCEEECCCCcccc---cCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCc
Confidence 124456777777777766554 334445567777777776653211 1123456778888887776554
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.61 E-value=1.9e-09 Score=115.65 Aligned_cols=76 Identities=18% Similarity=0.077 Sum_probs=44.8
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTER 247 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~ 247 (513)
.+++.|++. ... ...+| .+..+++|++|++.+|.+..+| .. .+++|+.|+|.++......
T Consensus 285 ~~L~~L~l~---------~~~-----~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--- 344 (606)
T 3vq2_A 285 ANVSAMSLA---------GVS-----IKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--- 344 (606)
T ss_dssp TTCSEEEEE---------SCC-----CCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC---
T ss_pred CCCCEEEec---------Ccc-----chhhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch---
Confidence 678888876 111 23444 4555677888888877775553 33 6777777777666332211
Q ss_pred HhhcCCccceeEeeeee
Q 010332 248 LFSACPVLEELSIVGLL 264 (513)
Q Consensus 248 lls~cp~Le~L~L~~~c 264 (513)
-+..+|.|++|++ .++
T Consensus 345 ~~~~l~~L~~L~l-s~n 360 (606)
T 3vq2_A 345 KKVALPSLSYLDL-SRN 360 (606)
T ss_dssp CCCCCTTCCEEEC-CSS
T ss_pred hhccCCCCCEEEC-cCC
Confidence 1345666666666 554
No 32
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.61 E-value=4.8e-09 Score=109.46 Aligned_cols=190 Identities=13% Similarity=0.086 Sum_probs=82.3
Q ss_pred CcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCcc
Q 010332 201 LCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTL 280 (513)
Q Consensus 201 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~L 280 (513)
+..+++|++|+|++|.+...++ ...+++|+.|+|+++.+.+ +..+|.|+.|.+ .+|.. .++.. -..++|
T Consensus 54 ~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L-~~N~l-~~~~~--~~l~~L 122 (487)
T 3oja_A 54 LAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE------LLVGPSIETLHA-ANNNI-SRVSC--SRGQGK 122 (487)
T ss_dssp GTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE------EEECTTCCEEEC-CSSCC-CCEEE--CCCSSC
T ss_pred HhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC------CCCCCCcCEEEC-cCCcC-CCCCc--cccCCC
Confidence 3345556666666555544322 3445556666666555543 122355666666 55433 11111 112455
Q ss_pred ceEEEEeecCCCCCCCCcceEE-EeCCceeEEEEEecccccee---e-ccCCCeeEEEEEEEeecCCCCCccCCCCchhh
Q 010332 281 KKLGIRFDIGDQGSSYNEHKIL-IRAPNLERFHIIDHALVSYM---V-HELHSLTEAFIDVSYFEWPSPSYVERPLPQAK 355 (513)
Q Consensus 281 r~L~i~~~~~~~~~~~~~~~i~-i~ap~L~~L~l~~~~~~~~~---~-~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 355 (513)
+.|.+.++ .. ....... -..++|++|.++++...... + ..+++|+.++++.... ...
T Consensus 123 ~~L~L~~N--~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l-------------~~~ 184 (487)
T 3oja_A 123 KNIYLANN--KI---TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-------------YDV 184 (487)
T ss_dssp EEEECCSS--CC---CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-------------CEE
T ss_pred CEEECCCC--CC---CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc-------------ccc
Confidence 55555544 11 0111111 13455555555554332211 1 1345555555432110 000
Q ss_pred HHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecc
Q 010332 356 RVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHA 428 (513)
Q Consensus 356 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~ 428 (513)
.....+++++.|+|+.+.+.. +.+ .+..+++|+.|++..+... .++..+..+|+|+.|++..+.
T Consensus 185 ---~~~~~l~~L~~L~Ls~N~l~~---~~~-~~~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 185 ---KGQVVFAKLKTLDLSSNKLAF---MGP-EFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp ---ECCCCCTTCCEEECCSSCCCE---ECG-GGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTCC
T ss_pred ---cccccCCCCCEEECCCCCCCC---CCH-hHcCCCCccEEEecCCcCc--ccchhhccCCCCCEEEcCCCC
Confidence 001134556666665554443 211 1334555666665443221 122234455666666665543
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.60 E-value=9e-08 Score=101.15 Aligned_cols=240 Identities=14% Similarity=0.136 Sum_probs=135.1
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCcee
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTN 272 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~ 272 (513)
...+|..++ ++|++|+|+++.+..+++. ..++++|++|+|+++.+.+ .....+.+++.|++|+| .++.. .+...
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L-s~n~l-~~~~~ 91 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDL-SDNHL-SSLSS 91 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEC-TTSCC-CSCCH
T ss_pred cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEEC-CCCcc-CccCH
Confidence 456777654 7899999999998876553 4679999999999998875 11234678999999999 87754 22211
Q ss_pred EEE-ecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccc-cceeeccCCCeeEEEEEEEeecCCCCCccCCC
Q 010332 273 FNI-SSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHAL-VSYMVHELHSLTEAFIDVSYFEWPSPSYVERP 350 (513)
Q Consensus 273 l~i-~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~-~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~ 350 (513)
-.+ ..++|+.|.+.++ .... .......-..++|++|.+.++.. ..+
T Consensus 92 ~~~~~l~~L~~L~Ls~n--~l~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~----------------------------- 139 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGN--PYQT-LGVTSLFPNLTNLQTLRIGNVETFSEI----------------------------- 139 (549)
T ss_dssp HHHTTCTTCCEEECTTC--CCSS-SCSSCSCTTCTTCCEEEEEESSSCCEE-----------------------------
T ss_pred HHhccCCCCcEEECCCC--cccc-cchhhhhhccCCccEEECCCCcccccc-----------------------------
Confidence 111 2356777777655 2100 00001111334555555554421 000
Q ss_pred CchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecccC
Q 010332 351 LPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVR 430 (513)
Q Consensus 351 ~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~ 430 (513)
....+.++++++.|.++...+.. ..+..+..+++|++|++..+..... -..++..+++|+.|++......
T Consensus 140 ------~~~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 140 ------RRIDFAGLTSLNELEIKALSLRN---YQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp ------CTTTTTTCCEEEEEEEEETTCCE---ECTTTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEESCBCT
T ss_pred ------CHhhhhcccccCeeeccCCcccc---cChhhhhccccCceEecccCccccc-chhhHhhcccccEEEccCCccc
Confidence 00124557788888888776654 3444566778888888876643211 1223567889999998876543
Q ss_pred CCCCccccCccccccccccEEEEEEecCcHHHHHHHHHHHhcccCcCcEEEE
Q 010332 431 DSGFIFEEPVPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVK 482 (513)
Q Consensus 431 ~~~~~w~~~~~~c~~~~Lk~v~i~~f~g~~~e~~l~~~lL~~a~~Le~~~i~ 482 (513)
... +...... -...+|+.+.+.+-.-......-+.-.+.+.+.|+.+.+.
T Consensus 210 ~~~-~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 210 RFQ-FSPLPVD-EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp TCC-CCCCSSC-CCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred ccc-ccccchh-hhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 211 0000011 1236677777764332222222222233455556665554
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.59 E-value=3e-09 Score=114.09 Aligned_cols=68 Identities=29% Similarity=0.286 Sum_probs=32.2
Q ss_pred ccCCCCcCCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeee
Q 010332 196 ELPESLCTSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLL 264 (513)
Q Consensus 196 ~lp~~l~~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c 264 (513)
.+|..+..+++|++|+|.++.+..+++ ....+++|+.|+|.++.+........+..++.|++|++ .++
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l-~~n 360 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL-SHD 360 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC-CSS
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC-CCC
Confidence 444444445555555555555544322 22345555555555554332111122445555555555 444
No 35
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.59 E-value=4.8e-10 Score=116.00 Aligned_cols=218 Identities=18% Similarity=0.082 Sum_probs=131.4
Q ss_pred ccCCCCcCCCcccEEEEeeeeccccCCC------ccccCCcceEEeeeEEeCcc---hHHHHhhcCCccceeEeeeeeec
Q 010332 196 ELPESLCTSTTLEVLVLYSDFVINIPPS------GLCFPCLKFLHIEMYCLPNN---LTERLFSACPVLEELSIVGLLVN 266 (513)
Q Consensus 196 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~------~~~~~~Lk~L~L~~~~~~~~---~l~~lls~cp~Le~L~L~~~c~~ 266 (513)
.+|..+..+++|++|+|+++.+.+..+. ....++|++|+|.++.+++. .+...+..|+.|++|++ .+|..
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L-~~n~i 182 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV-SNNDI 182 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC-CSSBC
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEEC-cCCCc
Confidence 4566667788999999999887542111 11245799999999988773 45666788999999999 77754
Q ss_pred cCC--ceeEE----EecCccceEEEEeecCCCCCCCC---cceEEEeCCceeEEEEEeccccce--------eeccCCCe
Q 010332 267 ADV--VTNFN----ISSPTLKKLGIRFDIGDQGSSYN---EHKILIRAPNLERFHIIDHALVSY--------MVHELHSL 329 (513)
Q Consensus 267 ~~~--~~~l~----i~~~~Lr~L~i~~~~~~~~~~~~---~~~i~i~ap~L~~L~l~~~~~~~~--------~~~~~p~L 329 (513)
.. ...+. -..++|+.|.+.+| .... .. .....-..++|++|.++++..... .....++|
T Consensus 183 -~~~~~~~l~~~l~~~~~~L~~L~L~~n--~l~~-~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 183 -NEAGVRVLCQGLKDSPCQLEALKLESC--GVTS-DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp -HHHHHHHHHHHHHHSCCCCCEEECTTS--CCBT-THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred -chHHHHHHHHHHhcCCCCceEEEccCC--CCcH-HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 11 11111 01348999998877 2210 00 011111568899999988753221 11246788
Q ss_pred eEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhh--hccCCCCCcCcccEEEEEeccC---
Q 010332 330 TEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDL--AYEDFFPTFPNLTYLEVHIGGT--- 404 (513)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~--~~~~~~p~~~~Lk~L~l~~~~~--- 404 (513)
+.+++..+... + .....+...+..+++++.|+++.+.+..... +........++|++|++..+..
T Consensus 259 ~~L~L~~n~l~--------~--~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 259 RTLWIWECGIT--------A--KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp CEEECTTSCCC--------H--HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred eEEECcCCCCC--------H--HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 88877433200 0 1122355666778889999988876543110 0000011335788888876643
Q ss_pred CHHHHHHHHhcCCCcceEEEEecc
Q 010332 405 SWKLLLAILNSLPNLEVLLIHSHA 428 (513)
Q Consensus 405 ~~~~l~~lL~~~P~Le~L~i~~~~ 428 (513)
....+...+..+|+|+.|+|..+.
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHHhhCCCccEEEccCCc
Confidence 334677777888888888887654
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.58 E-value=6.4e-09 Score=101.98 Aligned_cols=225 Identities=14% Similarity=0.086 Sum_probs=131.5
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEee-eeccccCC-CccccCCcceEEeeeEEeCcchH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYS-DFVINIPP-SGLCFPCLKFLHIEMYCLPNNLT 245 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~-~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l 245 (513)
.+|++|++.- .... ....+|..+..+++|++|+|++ +.+....| ....+++|++|+|+++.+.+ .+
T Consensus 50 ~~l~~L~L~~---------~~l~--~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSG---------LNLP--KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AI 117 (313)
T ss_dssp CCEEEEEEEC---------CCCS--SCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-EC
T ss_pred ceEEEEECCC---------CCcc--CCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cC
Confidence 4788888871 1100 0226788888899999999995 66664334 45689999999999998864 22
Q ss_pred HHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEeecCCCCCCCCcceEEEeC-CceeEEEEEeccccc---e
Q 010332 246 ERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRA-PNLERFHIIDHALVS---Y 321 (513)
Q Consensus 246 ~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~a-p~L~~L~l~~~~~~~---~ 321 (513)
...+..++.|++|+| .++.....+...--..++|+.|.+.++ ... ......+. .. ++|++|.++++.... .
T Consensus 118 p~~~~~l~~L~~L~L-s~N~l~~~~p~~~~~l~~L~~L~L~~N--~l~-~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDF-SYNALSGTLPPSISSLPNLVGITFDGN--RIS-GAIPDSYG-SFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp CGGGGGCTTCCEEEC-CSSEEESCCCGGGGGCTTCCEEECCSS--CCE-EECCGGGG-CCCTTCCEEECCSSEEEEECCG
T ss_pred CHHHhCCCCCCEEeC-CCCccCCcCChHHhcCCCCCeEECcCC--ccc-CcCCHHHh-hhhhcCcEEECcCCeeeccCCh
Confidence 234778999999999 777541111111112468888888776 210 00000111 22 378888888764321 1
Q ss_pred eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEe
Q 010332 322 MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHI 401 (513)
Q Consensus 322 ~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~ 401 (513)
.+..++ |+.+++..... .......+..+++++.|.++.+.+.. ..+. +..+++|++|++..
T Consensus 193 ~~~~l~-L~~L~Ls~N~l--------------~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~-~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 193 TFANLN-LAFVDLSRNML--------------EGDASVLFGSDKNTQKIHLAKNSLAF---DLGK-VGLSKNLNGLDLRN 253 (313)
T ss_dssp GGGGCC-CSEEECCSSEE--------------EECCGGGCCTTSCCSEEECCSSEECC---BGGG-CCCCTTCCEEECCS
T ss_pred HHhCCc-ccEEECcCCcc--------------cCcCCHHHhcCCCCCEEECCCCceee---ecCc-ccccCCCCEEECcC
Confidence 233343 66666643220 01122345667788888887766543 1111 34567788887765
Q ss_pred ccCCHHHHHHHHhcCCCcceEEEEeccc
Q 010332 402 GGTSWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 402 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
+... ..++..+..+|+|+.|++..+..
T Consensus 254 N~l~-~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 254 NRIY-GTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp SCCE-ECCCGGGGGCTTCCEEECCSSEE
T ss_pred Cccc-CcCChHHhcCcCCCEEECcCCcc
Confidence 5321 01233456778888888876543
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.57 E-value=1.1e-08 Score=109.68 Aligned_cols=200 Identities=16% Similarity=0.168 Sum_probs=102.3
Q ss_pred cCCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEe-cCc
Q 010332 202 CTSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNIS-SPT 279 (513)
Q Consensus 202 ~~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~-~~~ 279 (513)
..+++|++|+|++|.+..+|+.. ..+++|+.|+|+++.+.+ .....+.+++.|+.|.| .++.. .++ .+. .++
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L-~~N~l-~~~---~~~~l~~ 193 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQL-SSNRL-THV---DLSLIPS 193 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEEC-TTSCC-SBC---CGGGCTT
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEEC-cCCCC-CCc---Chhhhhh
Confidence 34566666666666666554433 456666666666665543 11122455666666666 55433 111 111 123
Q ss_pred cceEEEEeecCCCCC-------------CCCcceEE-EeCCceeEEEEEeccccc-eeeccCCCeeEEEEEEEeecCCCC
Q 010332 280 LKKLGIRFDIGDQGS-------------SYNEHKIL-IRAPNLERFHIIDHALVS-YMVHELHSLTEAFIDVSYFEWPSP 344 (513)
Q Consensus 280 Lr~L~i~~~~~~~~~-------------~~~~~~i~-i~ap~L~~L~l~~~~~~~-~~~~~~p~L~~~~l~~~~~~~~~~ 344 (513)
|+.|.+.++ .... ......+. ...++|++|.+.++.... ..+..++.|+.+++.....
T Consensus 194 L~~L~l~~n--~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l----- 266 (597)
T 3oja_B 194 LFHANVSYN--LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL----- 266 (597)
T ss_dssp CSEEECCSS--CCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC-----
T ss_pred hhhhhcccC--ccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCcc-----
Confidence 333333322 0000 00000111 112456666666654322 2345667777776643220
Q ss_pred CccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEE
Q 010332 345 SYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLI 424 (513)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i 424 (513)
.......+..+++++.|.|+.+.+.. + +.....+++|+.|+|..+... .++.-+..+|+|+.|+|
T Consensus 267 ---------~~~~~~~~~~l~~L~~L~Ls~N~l~~---l-~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 267 ---------EKIMYHPFVKMQRLERLYISNNRLVA---L-NLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYL 331 (597)
T ss_dssp ---------CEEESGGGTTCSSCCEEECTTSCCCE---E-ECSSSCCTTCCEEECCSSCCC--CCGGGHHHHTTCSEEEC
T ss_pred ---------CCCCHHHhcCccCCCEEECCCCCCCC---C-CcccccCCCCcEEECCCCCCC--ccCcccccCCCCCEEEC
Confidence 01112335567788888887766554 2 222345788888888776432 23333467789999999
Q ss_pred Eeccc
Q 010332 425 HSHAV 429 (513)
Q Consensus 425 ~~~~~ 429 (513)
..+..
T Consensus 332 ~~N~l 336 (597)
T 3oja_B 332 DHNSI 336 (597)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 88664
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.57 E-value=1.4e-07 Score=99.07 Aligned_cols=133 Identities=16% Similarity=0.181 Sum_probs=78.7
Q ss_pred cccCCCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeE
Q 010332 195 VELPESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNF 273 (513)
Q Consensus 195 ~~lp~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l 273 (513)
..+|..++ ++|++|+|+++.+..+++. ..++++|++|+|+++.+.+- ....+.+++.|++|+| .++.. ..+...
T Consensus 13 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L-s~N~l-~~lp~~ 87 (520)
T 2z7x_B 13 IHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDL-SHNKL-VKISCH 87 (520)
T ss_dssp SSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEEC-CSSCC-CEEECC
T ss_pred cccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEec-CCCce-eecCcc
Confidence 35666554 6788888888877765432 34678888888887776641 1223667788888888 66654 222222
Q ss_pred EEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCe--eEEEEEEE
Q 010332 274 NISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSL--TEAFIDVS 337 (513)
Q Consensus 274 ~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L--~~~~l~~~ 337 (513)
..++|+.|.+.++ .... .......-..++|++|.++++......+..++.| +.+++...
T Consensus 88 --~l~~L~~L~L~~N--~l~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 88 --PTVNLKHLDLSFN--AFDA-LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp --CCCCCSEEECCSS--CCSS-CCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEEC
T ss_pred --ccCCccEEeccCC--cccc-ccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecc
Confidence 3467788887766 2110 0000111245677888777765544445556666 66666543
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.57 E-value=1.1e-08 Score=108.51 Aligned_cols=246 Identities=13% Similarity=0.118 Sum_probs=152.2
Q ss_pred cCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEe
Q 010332 197 LPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNIS 276 (513)
Q Consensus 197 lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~ 276 (513)
.|..+..+++|++|++.++.+..+|.....+ +|+.|+|.++.+.. +. ...++.|+.|.+ ..+.. ...... ..
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l-~~n~~-~~~~~~-~~ 345 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FP--TLKLKSLKRLTF-TSNKG-GNAFSE-VD 345 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CC--BCBCSSCCEEEE-ESCBS-CCBCCC-CB
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cC--cccccccCEEeC-cCCcc-cccccc-cc
Confidence 3444555788888888888877765444556 88888888887764 21 146888888888 77654 111111 34
Q ss_pred cCccceEEEEeecCCCCCCCCcceEE------EeCCceeEEEEEeccccce--eeccCCCeeEEEEEEEeecCCCCCccC
Q 010332 277 SPTLKKLGIRFDIGDQGSSYNEHKIL------IRAPNLERFHIIDHALVSY--MVHELHSLTEAFIDVSYFEWPSPSYVE 348 (513)
Q Consensus 277 ~~~Lr~L~i~~~~~~~~~~~~~~~i~------i~ap~L~~L~l~~~~~~~~--~~~~~p~L~~~~l~~~~~~~~~~~~~~ 348 (513)
.++|+.|.+.++ . ...+. ...++|++|.+.++..... .+..+++|+.+++.....
T Consensus 346 ~~~L~~L~l~~n--~------l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l--------- 408 (570)
T 2z63_A 346 LPSLEFLDLSRN--G------LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL--------- 408 (570)
T ss_dssp CTTCCEEECCSS--C------CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE---------
T ss_pred CCCCCEEeCcCC--c------cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcc---------
Confidence 578888888776 1 11111 1568899998888754322 266788888887743221
Q ss_pred CCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecc
Q 010332 349 RPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHA 428 (513)
Q Consensus 349 ~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~ 428 (513)
........+..+++++.|+++.+.+.. ..+..+..+++|++|++..+......++..+..+|+|+.|+|..+.
T Consensus 409 ----~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 409 ----KQMSEFSVFLSLRNLIYLDISHTHTRV---AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp ----ESCTTSCTTTTCTTCCEEECTTSCCEE---CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ----ccccchhhhhcCCCCCEEeCcCCcccc---cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 000011235678899999998876654 3444566788899998866532212233556788999999998765
Q ss_pred cCCCCCccccCccccccccccEEEEEE--ecCcHHHHHHHHHHHhcccCcCcEEEEecc
Q 010332 429 VRDSGFIFEEPVPRCLLFHVKKIEMRS--FGGYEHEFQLVKYFLKNIVSLEKLIVKSWA 485 (513)
Q Consensus 429 ~~~~~~~w~~~~~~c~~~~Lk~v~i~~--f~g~~~e~~l~~~lL~~a~~Le~~~i~~~~ 485 (513)
.......+ . ....+|+.+.+.+ +.+... -.+.+.+.|+.+.+....
T Consensus 482 l~~~~~~~---~--~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 482 LEQLSPTA---F--NSLSSLQVLNMASNQLKSVPD------GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCEECTTT---T--TTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSC
T ss_pred cccCChhh---h--hcccCCCEEeCCCCcCCCCCH------HHhhcccCCcEEEecCCc
Confidence 43211111 1 1237888888863 333221 124577899998887644
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.57 E-value=1.2e-08 Score=104.89 Aligned_cols=241 Identities=15% Similarity=0.109 Sum_probs=157.1
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCcee
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTN 272 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~ 272 (513)
...+|..+. ++++.|+|.++.+..+++. ..++++|+.|+|+++.+..-. ...+.+++.|++|+| .++.. ..+..
T Consensus 55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L-~~n~l-~~~~~ 129 (440)
T 3zyj_A 55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLEL-FDNRL-TTIPN 129 (440)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEEC-CSSCC-SSCCT
T ss_pred cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEEC-CCCcC-CeeCH
Confidence 456776554 6899999999998877543 458999999999998876511 134778999999999 87754 22221
Q ss_pred E-EEecCccceEEEEeecCCCCCCCCcceEE----EeCCceeEEEEEeccc-cce---eeccCCCeeEEEEEEEeecCCC
Q 010332 273 F-NISSPTLKKLGIRFDIGDQGSSYNEHKIL----IRAPNLERFHIIDHAL-VSY---MVHELHSLTEAFIDVSYFEWPS 343 (513)
Q Consensus 273 l-~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~----i~ap~L~~L~l~~~~~-~~~---~~~~~p~L~~~~l~~~~~~~~~ 343 (513)
- ....++|+.|.+.++ . ...+. -..++|++|.+.++.. ..+ .+..+++|+.+++......
T Consensus 130 ~~~~~l~~L~~L~L~~N--~------i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 198 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNN--P------IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--- 198 (440)
T ss_dssp TTSCSCSSCCEEECCSC--C------CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS---
T ss_pred hHhhccccCceeeCCCC--c------ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc---
Confidence 1 122468999999876 2 11111 1468999999988432 211 3567888988887433210
Q ss_pred CCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEE
Q 010332 344 PSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLL 423 (513)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~ 423 (513)
. .+ .+..+++++.|+|+.+.+.. +.+..+..+++|++|.+..+.... .....+..+|+|+.|+
T Consensus 199 --~----~~-------~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 199 --E----IP-------NLTPLIKLDELDLSGNHLSA---IRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEIN 261 (440)
T ss_dssp --S----CC-------CCTTCSSCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCE-ECTTSSTTCTTCCEEE
T ss_pred --c----cc-------ccCCCcccCEEECCCCccCc---cChhhhccCccCCEEECCCCceeE-EChhhhcCCCCCCEEE
Confidence 0 01 25678899999999987765 555567788999999986653210 0112356789999999
Q ss_pred EEecccCCCCCccccCccccccccccEEEEE--EecCcHHHHHHHHHHHhc
Q 010332 424 IHSHAVRDSGFIFEEPVPRCLLFHVKKIEMR--SFGGYEHEFQLVKYFLKN 472 (513)
Q Consensus 424 i~~~~~~~~~~~w~~~~~~c~~~~Lk~v~i~--~f~g~~~e~~l~~~lL~~ 472 (513)
|..+.........- ....+|+.+.+. .|........+..++-+.
T Consensus 262 L~~N~l~~~~~~~~-----~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~ 307 (440)
T 3zyj_A 262 LAHNNLTLLPHDLF-----TPLHHLERIHLHHNPWNCNCDILWLSWWIKDM 307 (440)
T ss_dssp CTTSCCCCCCTTTT-----SSCTTCCEEECCSSCEECSSTTHHHHHHHHTT
T ss_pred CCCCCCCccChhHh-----ccccCCCEEEcCCCCccCCCCchHHHHHHHhc
Confidence 98876542111110 124788888886 455555545566665543
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.54 E-value=2.1e-08 Score=103.62 Aligned_cols=58 Identities=17% Similarity=0.070 Sum_probs=32.1
Q ss_pred CcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 201 LCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 201 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
+..+++|++|+|+++.+..++ ...+++|+.|+|+++.+.+- . +.+++.|++|++ .++.
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L-~~N~ 117 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLNC-DTNK 117 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEEC-CSSC
T ss_pred hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee--e--cCCCCcCCEEEC-CCCc
Confidence 444566666666666655542 33456666666666555442 1 455566666666 5543
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.54 E-value=7e-10 Score=114.75 Aligned_cols=260 Identities=15% Similarity=0.089 Sum_probs=117.1
Q ss_pred CCCcccEEEEeeeecccc-----CCCccccCCcceEEeeeEEeCcchHHHHhhcCC----ccceeEeeeeeeccCCc---
Q 010332 203 TSTTLEVLVLYSDFVINI-----PPSGLCFPCLKFLHIEMYCLPNNLTERLFSACP----VLEELSIVGLLVNADVV--- 270 (513)
Q Consensus 203 ~~~~L~~L~L~~~~l~~~-----~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp----~Le~L~L~~~c~~~~~~--- 270 (513)
.+++|++|+|.+|.+... +.....+++|++|+|+++.+.+..+..+...++ .|++|+| .+|.. ...
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L-~~n~i-~~~~~~ 103 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL-QNCCL-TGAGCG 103 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEEC-TTSCC-BGGGHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEc-cCCCC-CHHHHH
Confidence 356777777777766531 111224577777777777666655555555555 5777777 66643 110
Q ss_pred --eeEEEecCccceEEEEeecCCCCCCCCcceEE----EeCCceeEEEEEeccccce-------eeccCCCeeEEEEEEE
Q 010332 271 --TNFNISSPTLKKLGIRFDIGDQGSSYNEHKIL----IRAPNLERFHIIDHALVSY-------MVHELHSLTEAFIDVS 337 (513)
Q Consensus 271 --~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~----i~ap~L~~L~l~~~~~~~~-------~~~~~p~L~~~~l~~~ 337 (513)
...--..++|+.|.+.++ ... +.....+. -..++|++|.+.++..... .+..+++|+.+++...
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n--~i~-~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDN--LLG-DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSS--BCH-HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHccCCceeEEECCCC--cCc-hHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 001112356777776655 110 00000000 0123577777666543211 1233456666555322
Q ss_pred eecCCCCCccCCCCchhhHHHHH---c-cCCCcceEEEEEcchhhhhhhh-ccCCCCCcCcccEEEEEeccCCHHHHHH-
Q 010332 338 YFEWPSPSYVERPLPQAKRVLEL---L-EGVNEIKFMSLSAETMFALDLA-YEDFFPTFPNLTYLEVHIGGTSWKLLLA- 411 (513)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~---l-~~l~~l~~L~l~~~~~~~~~~~-~~~~~p~~~~Lk~L~l~~~~~~~~~l~~- 411 (513)
. ........+ + ...++++.|.++.+.+...... .+..+..+++|++|++..+.....++..
T Consensus 181 ~-------------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 247 (461)
T 1z7x_W 181 D-------------INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247 (461)
T ss_dssp B-------------CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred C-------------cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH
Confidence 2 111111111 1 1344666666655443321000 0111224456666666554332222221
Q ss_pred ---HHhcCCCcceEEEEecccCCCCCccccCcccc--ccccccEEEEEEec-CcHHHHHHHHHHHhcccCcCcEEEEe
Q 010332 412 ---ILNSLPNLEVLLIHSHAVRDSGFIFEEPVPRC--LLFHVKKIEMRSFG-GYEHEFQLVKYFLKNIVSLEKLIVKS 483 (513)
Q Consensus 412 ---lL~~~P~Le~L~i~~~~~~~~~~~w~~~~~~c--~~~~Lk~v~i~~f~-g~~~e~~l~~~lL~~a~~Le~~~i~~ 483 (513)
+...+++|+.|++..+.....+. ...+.. ...+|+.+.+.+-. +......+...+..+.+.|+.+.+..
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGITAKGC---GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHH---HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHhcCCCCceEEECcCCCCCHHHH---HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 22246666666666543221100 000110 12567777765322 12222234444544556788777764
No 43
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.54 E-value=5e-09 Score=115.63 Aligned_cols=213 Identities=12% Similarity=0.097 Sum_probs=104.2
Q ss_pred ccCCCCcC-CCcccEEEEeeeeccccCC-CccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeE
Q 010332 196 ELPESLCT-STTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNF 273 (513)
Q Consensus 196 ~lp~~l~~-~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l 273 (513)
.+|..++. |++|++|+|.+|.+....| ....+++|++|+|.++.+.+..-...+..++.|++|+| ..|.....+...
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L-s~n~l~~~~p~~ 362 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL-SFNEFSGELPES 362 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC-CSSEEEECCCTT
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC-cCCccCccccHH
Confidence 44555544 3667777777766654323 23456777777777666653222233566777777777 655430000000
Q ss_pred EEec-CccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccc---eeeccCCCeeEEEEEEEeecCCCCCccCC
Q 010332 274 NISS-PTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVS---YMVHELHSLTEAFIDVSYFEWPSPSYVER 349 (513)
Q Consensus 274 ~i~~-~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~ 349 (513)
-... ++|+.|.+.++ ...............++|++|.+.++.... ..+..+++|+.+++......
T Consensus 363 l~~l~~~L~~L~Ls~N--~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--------- 431 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSN--NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS--------- 431 (768)
T ss_dssp HHHHTTTCSEEECCSS--EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE---------
T ss_pred HHhhhcCCcEEEccCC--CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc---------
Confidence 0011 26677766654 100000000000014567777777654321 23456677777766432210
Q ss_pred CCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEeccc
Q 010332 350 PLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 350 ~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
......+..+++++.|.++.+.+.. ..+..+..+++|+.|++..+.... .++..+..+++|+.|+|..+..
T Consensus 432 -----~~~p~~l~~l~~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 432 -----GTIPSSLGSLSKLRDLKLWLNMLEG---EIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp -----SCCCGGGGGCTTCCEEECCSSCCCS---CCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCC
T ss_pred -----CcccHHHhcCCCCCEEECCCCcccC---cCCHHHcCCCCceEEEecCCcccC-cCCHHHhcCCCCCEEEccCCcc
Confidence 0111234456667777776655443 223333455666666665543210 1223355667777777666543
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.54 E-value=4.1e-08 Score=99.22 Aligned_cols=213 Identities=12% Similarity=0.138 Sum_probs=121.2
Q ss_pred ccCCCCc-CCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeE
Q 010332 196 ELPESLC-TSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNF 273 (513)
Q Consensus 196 ~lp~~l~-~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l 273 (513)
.+|..++ .+++|++|+|+++.+..+++. ...+++|+.|+|.++.+.+-. +..+|.|+.|.+ ..+. +..+
T Consensus 131 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l-~~n~----l~~~ 201 (390)
T 3o6n_A 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANV-SYNL----LSTL 201 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEEC-CSSC----CSEE
T ss_pred cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccceeec-cccc----cccc
Confidence 4444432 345555555555555544332 234555555555555554321 344555555555 4432 1222
Q ss_pred EEecCccceEEEEeecCCCCCCCCcceEE-EeCCceeEEEEEeccccc-eeeccCCCeeEEEEEEEeecCCCCCccCCCC
Q 010332 274 NISSPTLKKLGIRFDIGDQGSSYNEHKIL-IRAPNLERFHIIDHALVS-YMVHELHSLTEAFIDVSYFEWPSPSYVERPL 351 (513)
Q Consensus 274 ~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~-i~ap~L~~L~l~~~~~~~-~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~ 351 (513)
. ..++|+.|.+.++ . ...+. ...++|++|.+.++.... ..+..+++|+.+++.....
T Consensus 202 ~-~~~~L~~L~l~~n--~------l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l------------ 260 (390)
T 3o6n_A 202 A-IPIAVEELDASHN--S------INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL------------ 260 (390)
T ss_dssp E-CCSSCSEEECCSS--C------CCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC------------
T ss_pred C-CCCcceEEECCCC--e------eeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcC------------
Confidence 1 1245777777665 1 11111 123678888888875432 2456788899888854320
Q ss_pred chhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecccCC
Q 010332 352 PQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRD 431 (513)
Q Consensus 352 ~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~ 431 (513)
.......+..+++++.|.++.+.+.. + +.....+++|++|++..+... .+..-+..+|+|+.|++..+....
T Consensus 261 --~~~~~~~~~~l~~L~~L~L~~n~l~~---~-~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 261 --EKIMYHPFVKMQRLERLYISNNRLVA---L-NLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp --CEEESGGGTTCSSCCEEECCSSCCCE---E-ECSSSCCTTCCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred --CCcChhHccccccCCEEECCCCcCcc---c-CcccCCCCCCCEEECCCCcce--ecCccccccCcCCEEECCCCccce
Confidence 01112346678999999999987665 2 223346789999999877432 222234568999999999876532
Q ss_pred CCCccccCccccccccccEEEEE
Q 010332 432 SGFIFEEPVPRCLLFHVKKIEMR 454 (513)
Q Consensus 432 ~~~~w~~~~~~c~~~~Lk~v~i~ 454 (513)
.. -....+|+.+.+.
T Consensus 333 ~~--------~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 333 LK--------LSTHHTLKNLTLS 347 (390)
T ss_dssp CC--------CCTTCCCSEEECC
T ss_pred eC--------chhhccCCEEEcC
Confidence 11 1124678888876
No 45
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.54 E-value=3.3e-09 Score=107.14 Aligned_cols=239 Identities=14% Similarity=0.110 Sum_probs=145.5
Q ss_pred cccCCCCcCCCcccEEEEeeeeccccCC-----CccccCCcceEEeeeEEeCc---------chHHHHhhcCCccceeEe
Q 010332 195 VELPESLCTSTTLEVLVLYSDFVINIPP-----SGLCFPCLKFLHIEMYCLPN---------NLTERLFSACPVLEELSI 260 (513)
Q Consensus 195 ~~lp~~l~~~~~L~~L~L~~~~l~~~~~-----~~~~~~~Lk~L~L~~~~~~~---------~~l~~lls~cp~Le~L~L 260 (513)
..++..+..+++|++|+|++|.+....+ ....+++|++|+|+++.+.. ..+...+..|+.|++|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3455555568899999999998765211 12368999999999975542 233344678999999999
Q ss_pred eeeeeccCC-----ceeEEEecCccceEEEEeecCCCCCCCCcceEE---EeC---------CceeEEEEEeccccce--
Q 010332 261 VGLLVNADV-----VTNFNISSPTLKKLGIRFDIGDQGSSYNEHKIL---IRA---------PNLERFHIIDHALVSY-- 321 (513)
Q Consensus 261 ~~~c~~~~~-----~~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~---i~a---------p~L~~L~l~~~~~~~~-- 321 (513)
.++.. .. +...-...++|+.|.+.+| ... +.....+. ... ++|++|.++++.....
T Consensus 102 -s~n~l-~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~-~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 102 -SDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNN--GLG-PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp -CSCCC-CTTTHHHHHHHHHHCTTCCEEECCSS--CCH-HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred -CCCcC-CHHHHHHHHHHHHhCCCCCEEECcCC--CCC-HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 88765 22 1111123578999999887 210 00000010 011 8999999988754311
Q ss_pred -----eeccCCCeeEEEEEEEeecCCCCCccCCCCchhh---HHHH-HccCCCcceEEEEEcchhhhhhh-hccCCCCCc
Q 010332 322 -----MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAK---RVLE-LLEGVNEIKFMSLSAETMFALDL-AYEDFFPTF 391 (513)
Q Consensus 322 -----~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~-~l~~l~~l~~L~l~~~~~~~~~~-~~~~~~p~~ 391 (513)
.+..+++|+.+++..+. .... .+.. .+..+++++.|.|+.+.+..... ..+..+..+
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~-------------l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNG-------------IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSC-------------CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCCcCEEECcCCC-------------CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 24467788888775433 1222 2334 66788899999998876642100 122235577
Q ss_pred CcccEEEEEeccCCHH---HHHHHHhc--CCCcceEEEEecccCCCCCccccCccccc---cccccEEEEE
Q 010332 392 PNLTYLEVHIGGTSWK---LLLAILNS--LPNLEVLLIHSHAVRDSGFIFEEPVPRCL---LFHVKKIEMR 454 (513)
Q Consensus 392 ~~Lk~L~l~~~~~~~~---~l~~lL~~--~P~Le~L~i~~~~~~~~~~~w~~~~~~c~---~~~Lk~v~i~ 454 (513)
++|++|+|..+..... .+...++. +|+|+.|.|..+.....+. ...+..+ ..+|+.+.+.
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~---~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV---RTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH---HHHHHHHHHHCTTCCEEECT
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH---HHHHHHHHhcCCCceEEEcc
Confidence 8899998877754333 45566644 8999999998765432100 0112111 3778888876
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.53 E-value=3.7e-07 Score=95.78 Aligned_cols=65 Identities=11% Similarity=0.150 Sum_probs=49.4
Q ss_pred cCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEeccc
Q 010332 362 EGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 362 ~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
..+++++.|+++.+.+.. ..+..+..+++|+.|++..+.. ....++..+..+++|+.|++..+..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTD---TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp SSCCCCCEEECCSSCCCT---TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred hhCCcccEEEeECCccCh---hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 567888888888876654 3344456788999999987754 4567778889999999999987553
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.50 E-value=1.2e-08 Score=105.31 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=63.5
Q ss_pred ccC-CCCcCCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEEeCcchHH-HHhhcCCccceeEeeeeeeccCCcee
Q 010332 196 ELP-ESLCTSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYCLPNNLTE-RLFSACPVLEELSIVGLLVNADVVTN 272 (513)
Q Consensus 196 ~lp-~~l~~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l~-~lls~cp~Le~L~L~~~c~~~~~~~~ 272 (513)
.+| ..+..+++|++|+|+++.+..++| ...++++|++|+|.++.+.+.... ..+..++.|++|.| .++.. .+...
T Consensus 69 ~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L-~~n~l-~~~~~ 146 (455)
T 3v47_A 69 VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL-RDNNI-KKIQP 146 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEEC-CSSBC-CSCCC
T ss_pred eECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEEC-CCCcc-CccCc
Confidence 443 345567899999999998877644 345789999999999888652222 33778999999999 87765 22211
Q ss_pred E--EEecCccceEEEEee
Q 010332 273 F--NISSPTLKKLGIRFD 288 (513)
Q Consensus 273 l--~i~~~~Lr~L~i~~~ 288 (513)
. -...++|+.|.+.++
T Consensus 147 ~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 147 ASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp CGGGGGCTTCCEEECTTC
T ss_pred ccccCCCCcccEEeCCCC
Confidence 1 123468889988776
No 48
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.50 E-value=2.8e-08 Score=107.24 Aligned_cols=207 Identities=9% Similarity=0.069 Sum_probs=131.4
Q ss_pred cCCCCc--CCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEE-eCcchHHHHh------hcCCccceeEeeeeeec
Q 010332 197 LPESLC--TSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYC-LPNNLTERLF------SACPVLEELSIVGLLVN 266 (513)
Q Consensus 197 lp~~l~--~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~-~~~~~l~~ll------s~cp~Le~L~L~~~c~~ 266 (513)
+|..+. .+++|++|+|++|.+.+..| ....+++|+.|+|+++. +.+..+..-+ ..|+.|++|.| .+|..
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L-~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI-GYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEEC-CSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEEC-CCCcC
Confidence 899988 89999999999998765434 45689999999999997 6641233223 35699999999 88765
Q ss_pred cCCcee--EEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccce--eeccCCC-eeEEEEEEEeecC
Q 010332 267 ADVVTN--FNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY--MVHELHS-LTEAFIDVSYFEW 341 (513)
Q Consensus 267 ~~~~~~--l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~--~~~~~p~-L~~~~l~~~~~~~ 341 (513)
..+.. .--..++|+.|.+.++ .. .+.....-..++|++|.++++....+ .+..+++ |+.+++......
T Consensus 318 -~~ip~~~~l~~l~~L~~L~L~~N--~l---~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 318 -KTFPVETSLQKMKKLGMLECLYN--QL---EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp -SSCCCHHHHTTCTTCCEEECCSC--CC---EEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-
T ss_pred -CccCchhhhccCCCCCEEeCcCC--cC---ccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-
Confidence 22222 1112468999999876 21 10111123557899999988754322 2556777 888877543310
Q ss_pred CCCCccCCCCchhhHHHHHccC--CCcceEEEEEcchhhhhhhhccCCCC-------CcCcccEEEEEeccCCHHHHHHH
Q 010332 342 PSPSYVERPLPQAKRVLELLEG--VNEIKFMSLSAETMFALDLAYEDFFP-------TFPNLTYLEVHIGGTSWKLLLAI 412 (513)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~--l~~l~~L~l~~~~~~~~~~~~~~~~p-------~~~~Lk~L~l~~~~~~~~~l~~l 412 (513)
.+...+.. +++++.|+++.+.+.. ..+..++ ...+|++|++..+... ..-..+
T Consensus 391 --------------~lp~~~~~~~l~~L~~L~Ls~N~l~~---~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~ 452 (636)
T 4eco_A 391 --------------YIPNIFDAKSVSVMSAIDFSYNEIGS---VDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKEL 452 (636)
T ss_dssp --------------SCCSCCCTTCSSCEEEEECCSSCTTT---TTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHH
T ss_pred --------------ccchhhhhcccCccCEEECcCCcCCC---cchhhhcccccccccCCCCCEEECcCCccC-cCCHHH
Confidence 11112222 3478888888877655 3333333 5567888888766432 111234
Q ss_pred HhcCCCcceEEEEeccc
Q 010332 413 LNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 413 L~~~P~Le~L~i~~~~~ 429 (513)
++.+++|+.|++..+..
T Consensus 453 ~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 453 FSTGSPLSSINLMGNML 469 (636)
T ss_dssp HHTTCCCSEEECCSSCC
T ss_pred HccCCCCCEEECCCCCC
Confidence 56788888888877543
No 49
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.49 E-value=1.2e-08 Score=112.66 Aligned_cols=130 Identities=17% Similarity=0.119 Sum_probs=75.9
Q ss_pred cCC--CCcCCCcccEEEEeeeeccccCCCc--cccCCcceEEeeeEEeCcchHH--HHhhcCCccceeEeeeeeeccCCc
Q 010332 197 LPE--SLCTSTTLEVLVLYSDFVINIPPSG--LCFPCLKFLHIEMYCLPNNLTE--RLFSACPVLEELSIVGLLVNADVV 270 (513)
Q Consensus 197 lp~--~l~~~~~L~~L~L~~~~l~~~~~~~--~~~~~Lk~L~L~~~~~~~~~l~--~lls~cp~Le~L~L~~~c~~~~~~ 270 (513)
+|. .+..+++|++|+|++|.+....+.. ..+++|++|+|+++.+.+.... ..+.+|+.|++|++ ..|.. .+.
T Consensus 116 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L-s~n~l-~~~ 193 (768)
T 3rgz_A 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI-SGNKI-SGD 193 (768)
T ss_dssp GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEEC-CSSEE-ESC
T ss_pred CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEEC-CCCcc-ccc
Confidence 455 6677888999999888776533332 4688888888888877663222 23678888888888 77654 221
Q ss_pred eeEEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEecccc---ceeeccCCCeeEEEE
Q 010332 271 TNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALV---SYMVHELHSLTEAFI 334 (513)
Q Consensus 271 ~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l 334 (513)
... ...++|+.|.+.++ ... ......-..++|++|.+.++... ...+..+++|+.+++
T Consensus 194 ~~~-~~l~~L~~L~Ls~n--~l~---~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 194 VDV-SRCVNLEFLDVSSN--NFS---TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp CBC-TTCTTCCEEECCSS--CCC---SCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCc-ccCCcCCEEECcCC--cCC---CCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 111 22456777777665 221 11111224466666666665432 112344555555554
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.48 E-value=5e-08 Score=104.45 Aligned_cols=212 Identities=15% Similarity=0.159 Sum_probs=140.0
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCCCCc-CCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPESLC-TSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLT 245 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l 245 (513)
.+++.|++. ++. ...+|..+| .+++|++|+|++|.+..+++. ...+++|+.|+|+++.+.+-.
T Consensus 123 ~~L~~L~L~----------~n~----l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~- 187 (597)
T 3oja_B 123 PLLTVLVLE----------RND----LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD- 187 (597)
T ss_dssp TTCCEEECC----------SSC----CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-
T ss_pred CCCCEEEee----------CCC----CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-
Confidence 578888876 211 446777654 579999999999999887664 457999999999998887632
Q ss_pred HHHhhcCCccceeEeeeeeeccCC------ceeEEEe-----------cCccceEEEEeecCCCCCCCCcceEEEeCCce
Q 010332 246 ERLFSACPVLEELSIVGLLVNADV------VTNFNIS-----------SPTLKKLGIRFDIGDQGSSYNEHKILIRAPNL 308 (513)
Q Consensus 246 ~~lls~cp~Le~L~L~~~c~~~~~------~~~l~i~-----------~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L 308 (513)
+..+|.|+.|.+ ..+.. .+ +..+.+. .++|+.|.+.++ ... . .......|+|
T Consensus 188 ---~~~l~~L~~L~l-~~n~l-~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n--~l~---~-~~~l~~l~~L 256 (597)
T 3oja_B 188 ---LSLIPSLFHANV-SYNLL-STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN--NLT---D-TAWLLNYPGL 256 (597)
T ss_dssp ---GGGCTTCSEEEC-CSSCC-SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSS--CCC---C-CGGGGGCTTC
T ss_pred ---hhhhhhhhhhhc-ccCcc-ccccCCchhheeeccCCcccccccccCCCCCEEECCCC--CCC---C-ChhhccCCCC
Confidence 456777777777 55432 11 1111111 135677777665 211 1 1112356899
Q ss_pred eEEEEEeccccce---eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhcc
Q 010332 309 ERFHIIDHALVSY---MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYE 385 (513)
Q Consensus 309 ~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~ 385 (513)
++|.++++..... .+..+++|+.++++.... . .+......+++++.|.|+.+.+.. +.
T Consensus 257 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-------------~--~l~~~~~~l~~L~~L~Ls~N~l~~---i~- 317 (597)
T 3oja_B 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-------------V--ALNLYGQPIPTLKVLDLSHNHLLH---VE- 317 (597)
T ss_dssp SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC-------------C--EEECSSSCCTTCCEEECCSSCCCC---CG-
T ss_pred CEEECCCCccCCCCHHHhcCccCCCEEECCCCCC-------------C--CCCcccccCCCCcEEECCCCCCCc---cC-
Confidence 9999999865433 456788999988853220 0 011223568999999999987654 22
Q ss_pred CCCCCcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEeccc
Q 010332 386 DFFPTFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 386 ~~~p~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
..+..+++|+.|+|..+.. ... +..+|+|+.|.|..+++
T Consensus 318 ~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCE
T ss_pred cccccCCCCCEEECCCCCCCCcC-----hhhcCCCCEEEeeCCCC
Confidence 2234788999999987743 221 67789999999988664
No 51
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.48 E-value=6.9e-08 Score=94.34 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=96.3
Q ss_pred hCCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHH
Q 010332 167 MRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTE 246 (513)
Q Consensus 167 ~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~ 246 (513)
-.+++.|++. ++. ...++. +..+++|++|+|+++.+..+ +....+++|+.|+|+++.+.+ +.
T Consensus 62 l~~L~~L~L~----------~n~----i~~~~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~--~~ 123 (308)
T 1h6u_A 62 LNNLIGLELK----------DNQ----ITDLAP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITD--VT 123 (308)
T ss_dssp CTTCCEEECC----------SSC----CCCCGG-GTTCCSCCEEECCSCCCSCC-GGGTTCTTCCEEECTTSCCCC--CG
T ss_pred cCCCCEEEcc----------CCc----CCCChh-HccCCCCCEEEccCCcCCCc-hhhcCCCCCCEEECCCCCCCC--ch
Confidence 3688888876 211 234444 66789999999999998875 455679999999999998876 22
Q ss_pred HHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccce-eecc
Q 010332 247 RLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY-MVHE 325 (513)
Q Consensus 247 ~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~-~~~~ 325 (513)
. +..++.|++|.+ .+|.. .++.. --..++|+.|.+.++ .. ..... .-..++|++|.++++..... .+..
T Consensus 124 ~-l~~l~~L~~L~l-~~n~l-~~~~~-l~~l~~L~~L~l~~n--~l---~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~ 193 (308)
T 1h6u_A 124 P-LAGLSNLQVLYL-DLNQI-TNISP-LAGLTNLQYLSIGNA--QV---SDLTP-LANLSKLTTLKADDNKISDISPLAS 193 (308)
T ss_dssp G-GTTCTTCCEEEC-CSSCC-CCCGG-GGGCTTCCEEECCSS--CC---CCCGG-GTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred h-hcCCCCCCEEEC-CCCcc-CcCcc-ccCCCCccEEEccCC--cC---CCChh-hcCCCCCCEEECCCCccCcChhhcC
Confidence 2 789999999999 88765 33332 112478999999887 32 11111 22568899999988754322 2455
Q ss_pred CCCeeEEEEE
Q 010332 326 LHSLTEAFID 335 (513)
Q Consensus 326 ~p~L~~~~l~ 335 (513)
+++|+.++++
T Consensus 194 l~~L~~L~L~ 203 (308)
T 1h6u_A 194 LPNLIEVHLK 203 (308)
T ss_dssp CTTCCEEECT
T ss_pred CCCCCEEEcc
Confidence 6666666553
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.47 E-value=3.5e-09 Score=104.69 Aligned_cols=114 Identities=13% Similarity=0.035 Sum_probs=59.8
Q ss_pred ccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecccCCCC-CccccC
Q 010332 361 LEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRDSG-FIFEEP 439 (513)
Q Consensus 361 l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~-~~w~~~ 439 (513)
+..+++++.|.++.+.+.. +.+..+..+++|++|++..+... .++.-+..+|+|+.|++......... ..+...
T Consensus 213 l~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRM---IENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp STTCTTCSCCBCCSSCCCC---CCTTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred hcCCCCCCEEECCCCcCCc---CChhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence 4566778888887766554 33334556778888888665332 23333577888888888876543211 111111
Q ss_pred ccccccccccEEEEEEecCcHHHHHHHHHHHhcccCcCcEEE
Q 010332 440 VPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIV 481 (513)
Q Consensus 440 ~~~c~~~~Lk~v~i~~f~g~~~e~~l~~~lL~~a~~Le~~~i 481 (513)
.+......|+.+.+.+-..... .+..-.+...+.|+.+.+
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~~~--~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVPYW--EVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSCGG--GSCGGGGTTBCCSTTEEC
T ss_pred ccccccccccceEeecCccccc--ccCcccccccchhhhhhc
Confidence 1111235567766653322111 111112345666666554
No 53
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.47 E-value=9.6e-07 Score=93.67 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=48.1
Q ss_pred cCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccC-CHHHHHHHHhcCCCcceEEEEeccc
Q 010332 362 EGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGT-SWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 362 ~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~-~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
..+++++.|+++.+.+.. ..+..+..+++|+.|++..+.. ....++..+..+++|+.|++..+..
T Consensus 350 ~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTD---SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp SSCCCCCEEECCSSCCCT---TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred cCCCCceEEECCCCcccc---chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 567788888888776654 3444456788999999977653 3456677788999999999987654
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.46 E-value=9.5e-09 Score=107.19 Aligned_cols=190 Identities=11% Similarity=0.124 Sum_probs=119.7
Q ss_pred CCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccce
Q 010332 204 STTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKK 282 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~ 282 (513)
+++|++|+|+++.+..+++. ...+++|+.|+|+++.+.+.. . +..++.|+.|+| .+|.. ..+. ..++|+.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~L-s~N~l----~~l~-~~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDL-NNNYV----QELL-VGPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEEC-CSSEE----EEEE-ECTTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEe-cCCcC----CCCC-CCCCcCE
Confidence 45788888888888776543 347888888888888776411 1 778888888888 77643 2222 2378888
Q ss_pred EEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccc---eeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHH
Q 010332 283 LGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVS---YMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLE 359 (513)
Q Consensus 283 L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (513)
|.+.++ .. .....-..|+|++|.+.++.... ..+..+++|+.++++... ..+.....
T Consensus 104 L~L~~N--~l-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~~~~ 163 (487)
T 3oja_A 104 LHAANN--NI-----SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-------------IDTVNFAE 163 (487)
T ss_dssp EECCSS--CC-----CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-------------CCEEEGGG
T ss_pred EECcCC--cC-----CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-------------CCCcChHH
Confidence 888876 21 11222245788888888875432 245667888887774322 11111222
Q ss_pred HccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEeccc
Q 010332 360 LLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 360 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
+...+++++.|+|+.+.+.. +.. ...+++|+.|+|..+... +++.-+..+|+|+.|++..+..
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~---~~~--~~~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYD---VKG--QVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCE---EEC--CCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTSCC
T ss_pred HhhhCCcccEEecCCCcccc---ccc--cccCCCCCEEECCCCCCC--CCCHhHcCCCCccEEEecCCcC
Confidence 33457888888888877654 211 224778888888665432 1212256778888888877554
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.45 E-value=1.4e-08 Score=108.91 Aligned_cols=118 Identities=13% Similarity=0.073 Sum_probs=78.1
Q ss_pred CcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEE-ecCc
Q 010332 201 LCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNI-SSPT 279 (513)
Q Consensus 201 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i-~~~~ 279 (513)
+..+++|+.|++.++.+..++ ....+++|++|++.++.+.. +..+ .+|.|++|.+ ..|.. ...+.+ ..++
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l-~~n~~---~~~~~~~~l~~ 351 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTL-TMNKG---SISFKKVALPS 351 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEE-ESCSS---CEECCCCCCTT
T ss_pred cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcc--cccC--CCCccceeec-cCCcC---ccchhhccCCC
Confidence 455688999999999887764 55678899999999998843 3323 8999999999 77732 222222 3467
Q ss_pred cceEEEEeecCCCCCCCCcceE------EEeCCceeEEEEEeccccce--eeccCCCeeEEEEE
Q 010332 280 LKKLGIRFDIGDQGSSYNEHKI------LIRAPNLERFHIIDHALVSY--MVHELHSLTEAFID 335 (513)
Q Consensus 280 Lr~L~i~~~~~~~~~~~~~~~i------~i~ap~L~~L~l~~~~~~~~--~~~~~p~L~~~~l~ 335 (513)
|+.|.+.++ . ...+ ....++|++|.+.++..... .+..+++|+.+++.
T Consensus 352 L~~L~ls~n--~------l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 352 LSYLDLSRN--A------LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ 407 (606)
T ss_dssp CCEEECCSS--C------EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECT
T ss_pred CCEEECcCC--c------cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECC
Confidence 888888765 1 1111 12457788888777653322 34566777777663
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.45 E-value=7.5e-08 Score=99.38 Aligned_cols=206 Identities=16% Similarity=0.187 Sum_probs=139.5
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccC-CCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELP-ESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLT 245 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l 245 (513)
.+++.|++. +.. ...++ ..+..+++|++|+|.++.+..+++. ...+++|+.|+|+++.+.. ..
T Consensus 99 ~~L~~L~Ls----------~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~ 163 (452)
T 3zyi_A 99 HHLEVLQLG----------RNS----IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IP 163 (452)
T ss_dssp TTCCEEECC----------SSC----CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-EC
T ss_pred CCCCEEECC----------CCc----cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce-eC
Confidence 578888876 110 22344 4455689999999999999887665 3579999999999998875 11
Q ss_pred HHHhhcCCccceeEeeeeeeccCCceeEEE----ecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccce
Q 010332 246 ERLFSACPVLEELSIVGLLVNADVVTNFNI----SSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY 321 (513)
Q Consensus 246 ~~lls~cp~Le~L~L~~~c~~~~~~~~l~i----~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~ 321 (513)
...+..++.|++|+| .+|. .+..+.. ..++|+.|.+.++ ... .. .-....++|++|.++++.....
T Consensus 164 ~~~~~~l~~L~~L~l-~~~~---~l~~i~~~~~~~l~~L~~L~L~~n--~l~---~~-~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 164 SYAFNRVPSLMRLDL-GELK---KLEYISEGAFEGLFNLKYLNLGMC--NIK---DM-PNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp TTTTTTCTTCCEEEC-CCCT---TCCEECTTTTTTCTTCCEEECTTS--CCS---SC-CCCTTCTTCCEEECTTSCCSEE
T ss_pred HhHHhcCCcccEEeC-CCCC---CccccChhhccCCCCCCEEECCCC--ccc---cc-ccccccccccEEECcCCcCccc
Confidence 234778999999999 8763 3333322 2368999999877 321 11 1122568999999998765433
Q ss_pred ---eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEE
Q 010332 322 ---MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLE 398 (513)
Q Consensus 322 ---~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~ 398 (513)
.+..+++|+.+++..... .......+.++++++.|+|+.+.+.. +....+..+++|+.|+
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l--------------~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQV--------------SLIERNAFDGLASLVELNLAHNNLSS---LPHDLFTPLRYLVELH 296 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCC--------------CEECTTTTTTCTTCCEEECCSSCCSC---CCTTSSTTCTTCCEEE
T ss_pred CcccccCccCCCEEEeCCCcC--------------ceECHHHhcCCCCCCEEECCCCcCCc---cChHHhccccCCCEEE
Confidence 466788899888743220 00112345678999999999987765 4555566788999999
Q ss_pred EEec----cCCHHHHHHHHhc
Q 010332 399 VHIG----GTSWKLLLAILNS 415 (513)
Q Consensus 399 l~~~----~~~~~~l~~lL~~ 415 (513)
|..+ .....++...++.
T Consensus 297 L~~Np~~CdC~~~~l~~~l~~ 317 (452)
T 3zyi_A 297 LHHNPWNCDCDILWLAWWLRE 317 (452)
T ss_dssp CCSSCEECSTTTHHHHHHHHH
T ss_pred ccCCCcCCCCCchHHHHHHHH
Confidence 9765 3355566555543
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.43 E-value=9.1e-10 Score=107.52 Aligned_cols=224 Identities=16% Similarity=0.134 Sum_probs=133.4
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCCCC-cCCCcccEEEEeeeecccc---CCCccccCCcceEEeeeEEeCcc
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPESL-CTSTTLEVLVLYSDFVINI---PPSGLCFPCLKFLHIEMYCLPNN 243 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~~---~~~~~~~~~Lk~L~L~~~~~~~~ 243 (513)
.+++.|++. +.. ...+|..+ ..+++|++|+|+++.+... +....++++|+.|+|+++.+..
T Consensus 28 ~~l~~L~L~----------~n~----l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~- 92 (306)
T 2z66_A 28 SSATRLELE----------SNK----LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT- 92 (306)
T ss_dssp TTCCEEECC----------SSC----CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-
T ss_pred CCCCEEECC----------CCc----cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-
Confidence 477888776 110 34667654 4578899999998877643 1233468899999998887654
Q ss_pred hHHHHhhcCCccceeEeeeeeeccCCcee--EEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccc-
Q 010332 244 LTERLFSACPVLEELSIVGLLVNADVVTN--FNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVS- 320 (513)
Q Consensus 244 ~l~~lls~cp~Le~L~L~~~c~~~~~~~~--l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~- 320 (513)
+..-+..++.|++|++ .++.. ..+.. .....++|+.|.+.++ ... .......-..++|++|.+.++....
T Consensus 93 -l~~~~~~l~~L~~L~l-~~n~l-~~~~~~~~~~~l~~L~~L~l~~n--~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 93 -MSSNFLGLEQLEHLDF-QHSNL-KQMSEFSVFLSLRNLIYLDISHT--HTR--VAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp -EEEEEETCTTCCEEEC-TTSEE-ESSTTTTTTTTCTTCCEEECTTS--CCE--ECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred -ChhhcCCCCCCCEEEC-CCCcc-cccccchhhhhccCCCEEECCCC--cCC--ccchhhcccCcCCCEEECCCCccccc
Confidence 1112567899999999 77654 22111 1112367888888765 110 0000011135788888888765432
Q ss_pred ---eeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEE
Q 010332 321 ---YMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYL 397 (513)
Q Consensus 321 ---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L 397 (513)
..+..+++|+.+++..... .......+..+++++.|.++.+.+.. +....+..+++|++|
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l--------------~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQL--------------EQLSPTAFNSLSSLQVLNMSHNNFFS---LDTFPYKCLNSLQVL 228 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCC--------------CEECTTTTTTCTTCCEEECTTSCCSB---CCSGGGTTCTTCCEE
T ss_pred cchhHHhhCcCCCEEECCCCCc--------------CCcCHHHhcCCCCCCEEECCCCccCc---cChhhccCcccCCEe
Confidence 2456778888887743220 00112335667888888888876654 333345567888888
Q ss_pred EEEeccCCHHHHHHHHhcCC-CcceEEEEecccCC
Q 010332 398 EVHIGGTSWKLLLAILNSLP-NLEVLLIHSHAVRD 431 (513)
Q Consensus 398 ~l~~~~~~~~~l~~lL~~~P-~Le~L~i~~~~~~~ 431 (513)
++..+.... .....+..+| +|+.|++...+...
T Consensus 229 ~L~~N~l~~-~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 229 DYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp ECTTSCCCB-CSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ECCCCCCcc-cCHHHHHhhhccCCEEEccCCCeec
Confidence 886653211 0111234454 88888888766543
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.42 E-value=1.4e-08 Score=99.70 Aligned_cols=149 Identities=14% Similarity=0.064 Sum_probs=90.3
Q ss_pred hHHHHHHHHHh--CCceEEEEEeecCCccceeeccCCCcccccC-CCCcCCCcccEEEEeeeeccccCCCccccCCcceE
Q 010332 157 LLKFWVSSAIM--RNVREIEIYLESHGLHTLFYFFERQDPVELP-ESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFL 233 (513)
Q Consensus 157 ~~~~wl~~a~~--~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L 233 (513)
.+...+..... .++++|++. +.. ...++ ..+..+++|++|+|+++.+...++ ...+++|++|
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~----------~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L 85 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLS----------GNP----LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTL 85 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECT----------TSC----CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEE
T ss_pred chhhhHHHHhccCCCCCEEECc----------CCc----cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEE
Confidence 44555554433 578888886 110 22333 344567899999999998876533 5678999999
Q ss_pred EeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEeecCCCCCCCCcceEE-EeCCceeEEE
Q 010332 234 HIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKIL-IRAPNLERFH 312 (513)
Q Consensus 234 ~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~-i~ap~L~~L~ 312 (513)
+|+++.+.+ +..+|.|++|.+ ..+.. .++. ....++|+.|.+.++ .. ....... -..++|++|.
T Consensus 86 ~Ls~n~l~~------l~~~~~L~~L~l-~~n~l-~~~~--~~~~~~L~~L~l~~N--~l---~~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 86 DLNNNYVQE------LLVGPSIETLHA-ANNNI-SRVS--CSRGQGKKNIYLANN--KI---TMLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp ECCSSEEEE------EEECTTCCEEEC-CSSCC-SEEE--ECCCSSCEEEECCSS--CC---CSGGGBCTGGGSSEEEEE
T ss_pred ECcCCcccc------ccCCCCcCEEEC-CCCcc-CCcC--ccccCCCCEEECCCC--CC---CCccchhhhccCCCCEEE
Confidence 999998875 235589999998 77654 2111 112356888887766 21 1111111 2356777777
Q ss_pred EEecccccee----eccCCCeeEEEEE
Q 010332 313 IIDHALVSYM----VHELHSLTEAFID 335 (513)
Q Consensus 313 l~~~~~~~~~----~~~~p~L~~~~l~ 335 (513)
++++...... ...+++|+.+++.
T Consensus 151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CCCCCCCcccHHHHhhccCcCCEEECC
Confidence 7766443322 1245666666653
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.42 E-value=1.2e-08 Score=98.32 Aligned_cols=212 Identities=16% Similarity=0.106 Sum_probs=135.2
Q ss_pred hCCceEEEEEeecCCccceeeccCCCcccccCC-CCcCCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEE-eCcc
Q 010332 167 MRNVREIEIYLESHGLHTLFYFFERQDPVELPE-SLCTSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYC-LPNN 243 (513)
Q Consensus 167 ~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~-~~~~ 243 (513)
..++++|++. ... ...+|. .+..+++|++|+|.++.+..+.+ ....+++|++|+|.++. +..
T Consensus 31 ~~~l~~L~l~----------~n~----i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~- 95 (285)
T 1ozn_A 31 PAASQRIFLH----------GNR----ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS- 95 (285)
T ss_dssp CTTCSEEECT----------TSC----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC-
T ss_pred CCCceEEEee----------CCc----CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc-
Confidence 3578888875 110 234443 45568999999999998877644 34578999999999886 543
Q ss_pred hHHHHhhcCCccceeEeeeeeeccCCceeEEE-ecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEecccccee
Q 010332 244 LTERLFSACPVLEELSIVGLLVNADVVTNFNI-SSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYM 322 (513)
Q Consensus 244 ~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i-~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~ 322 (513)
.....+..++.|++|.+ .++.. .++..-.+ ..++|+.|.+.++ ... .......-..++|++|.++++....+.
T Consensus 96 ~~~~~~~~l~~L~~L~l-~~n~l-~~~~~~~~~~l~~L~~L~l~~n--~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHL-DRCGL-QELGPGLFRGLAALQYLYLQDN--ALQ--ALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CCTTTTTTCTTCCEEEC-TTSCC-CCCCTTTTTTCTTCCEEECCSS--CCC--CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred cCHHHhcCCcCCCEEEC-CCCcC-CEECHhHhhCCcCCCEEECCCC--ccc--ccCHhHhccCCCccEEECCCCcccccC
Confidence 11234678999999999 87754 22211111 2468999999876 221 000001124689999999987654332
Q ss_pred ---eccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEE
Q 010332 323 ---VHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEV 399 (513)
Q Consensus 323 ---~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l 399 (513)
+..+++|+.+++..... .......+..+++++.|+++.+.+.. +.+..+..+++|+.|++
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l--------------~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRV--------------AHVHPHAFRDLGRLMTLYLFANNLSA---LPTEALAPLRALQYLRL 232 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCC--------------CEECTTTTTTCTTCCEEECCSSCCSC---CCHHHHTTCTTCCEEEC
T ss_pred HHHhcCccccCEEECCCCcc--------------cccCHhHccCcccccEeeCCCCcCCc---CCHHHcccCcccCEEec
Confidence 56788899888753320 00112345678999999999987665 33333557889999999
Q ss_pred Eecc----CCHHHHHHHHhcC
Q 010332 400 HIGG----TSWKLLLAILNSL 416 (513)
Q Consensus 400 ~~~~----~~~~~l~~lL~~~ 416 (513)
..+. ....++...++..
T Consensus 233 ~~N~~~c~~~~~~~~~~l~~~ 253 (285)
T 1ozn_A 233 NDNPWVCDCRARPLWAWLQKF 253 (285)
T ss_dssp CSSCEECSGGGHHHHHHHHHC
T ss_pred cCCCccCCCCcHHHHHHHHhc
Confidence 7753 2344555555543
No 60
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.41 E-value=1.7e-08 Score=97.90 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=23.3
Q ss_pred CcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEe
Q 010332 205 TTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSI 260 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L 260 (513)
++|+.+++.++.+..+|+.. +++|+.|+|+++.+..-. ...+..++.|+.|.|
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L 62 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNL 62 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEEC
T ss_pred CCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEEC
Confidence 44555555555544432211 244555555555443310 112344555555555
No 61
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.41 E-value=2.4e-08 Score=95.77 Aligned_cols=172 Identities=16% Similarity=0.159 Sum_probs=88.2
Q ss_pred CcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCcc
Q 010332 201 LCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTL 280 (513)
Q Consensus 201 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~L 280 (513)
+..+++|++|+|+++.+..+ +....+++|++|+|.++.+.+ .....+..++.|++|+| .+|.. .++..-.+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L-~~n~l-~~~~~~~~----- 129 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVL-VENQL-QSLPDGVF----- 129 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC-TTSCC-CCCCTTTT-----
T ss_pred cccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCEEEC-CCCcC-CccCHHHh-----
Confidence 44566677777777766553 333456677777777666553 11223456677777777 55533 11110000
Q ss_pred ceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEecccccee---eccCCCeeEEEEEEEeecCCCCCccCCCCchhhHH
Q 010332 281 KKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYM---VHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRV 357 (513)
Q Consensus 281 r~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~---~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 357 (513)
-..++|++|.+.++...... +..+++|+.+++...... ...
T Consensus 130 ----------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------~~~ 173 (272)
T 3rfs_A 130 ----------------------DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ--------------SLP 173 (272)
T ss_dssp ----------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------CCC
T ss_pred ----------------------ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC--------------ccC
Confidence 02244444444444322111 234444554444322100 000
Q ss_pred HHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecc
Q 010332 358 LELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHA 428 (513)
Q Consensus 358 ~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~ 428 (513)
...+..+++++.|.++.+.+.. +.+..+..+++|++|++..+... ..||+|+.|.+....
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKS---VPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINK 233 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHH
T ss_pred HHHhcCCccCCEEECCCCcCCc---cCHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHh
Confidence 1234566788888888776654 44444556778888887665321 346677766665543
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.39 E-value=3.5e-08 Score=94.43 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=41.7
Q ss_pred ccCCCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 196 ELPESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 196 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
.+|..+. ++|++|+|.++.+..+++. ...+++|++|+|.++.+.. ....++..++.|++|.| .++.
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l-~~n~ 96 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWV-TDNK 96 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEEC-CSSC
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEEC-CCCc
Confidence 4454332 5677788887777766442 3467788888887776653 11223566778888888 6654
No 63
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.39 E-value=3.3e-08 Score=97.46 Aligned_cols=238 Identities=12% Similarity=0.147 Sum_probs=141.7
Q ss_pred CCceEEEEEeecCCccceeeccCCCccccc-CCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVEL-PESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTE 246 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~ 246 (513)
.+++.|++. ++. ...+ |..+..+++|++|+|+++.+..+|.. .+++|++|+|.++.+.. ...
T Consensus 76 ~~L~~L~L~----------~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--~~~~L~~L~l~~n~l~~-~~~ 138 (330)
T 1xku_A 76 KNLHTLILI----------NNK----ISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHENEITK-VRK 138 (330)
T ss_dssp TTCCEEECC----------SSC----CCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECCSSCCCB-BCH
T ss_pred CCCCEEECC----------CCc----CCeeCHHHhcCCCCCCEEECCCCcCCccChh--hcccccEEECCCCcccc-cCH
Confidence 578888876 111 2233 56666788999999999988776332 24889999999887765 233
Q ss_pred HHhhcCCccceeEeeeeeeccCC--ceeEEE-ecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccce--
Q 010332 247 RLFSACPVLEELSIVGLLVNADV--VTNFNI-SSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY-- 321 (513)
Q Consensus 247 ~lls~cp~Le~L~L~~~c~~~~~--~~~l~i-~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~-- 321 (513)
..+.+++.|+.|++ ..+.. .. .....+ ..++|+.|.+.++ .... -... ..++|++|.+.++.....
T Consensus 139 ~~~~~l~~L~~L~l-~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n--~l~~--l~~~---~~~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 139 SVFNGLNQMIVVEL-GTNPL-KSSGIENGAFQGMKKLSYIRIADT--NITT--IPQG---LPPSLTELHLDGNKITKVDA 209 (330)
T ss_dssp HHHTTCTTCCEEEC-CSSCC-CGGGBCTTGGGGCTTCCEEECCSS--CCCS--CCSS---CCTTCSEEECTTSCCCEECT
T ss_pred hHhcCCccccEEEC-CCCcC-CccCcChhhccCCCCcCEEECCCC--cccc--CCcc---ccccCCEEECCCCcCCccCH
Confidence 45788999999999 77653 11 111111 2367888888776 2210 0000 127899999888754333
Q ss_pred -eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEE
Q 010332 322 -MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVH 400 (513)
Q Consensus 322 -~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~ 400 (513)
.+..+++|+.+++..... . ......+..+++++.|+++.+.+.. .+..+..+++|++|++.
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l-------------~-~~~~~~~~~l~~L~~L~L~~N~l~~----lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSI-------------S-AVDNGSLANTPHLRELHLNNNKLVK----VPGGLADHKYIQVVYLH 271 (330)
T ss_dssp GGGTTCTTCCEEECCSSCC-------------C-EECTTTGGGSTTCCEEECCSSCCSS----CCTTTTTCSSCCEEECC
T ss_pred HHhcCCCCCCEEECCCCcC-------------c-eeChhhccCCCCCCEEECCCCcCcc----CChhhccCCCcCEEECC
Confidence 456778888887753320 0 0011234567889999999876653 22335577889999887
Q ss_pred eccCC---HHHHH--HHHhcCCCcceEEEEecccCCCCCccccC--ccccccccccEEEEE
Q 010332 401 IGGTS---WKLLL--AILNSLPNLEVLLIHSHAVRDSGFIFEEP--VPRCLLFHVKKIEMR 454 (513)
Q Consensus 401 ~~~~~---~~~l~--~lL~~~P~Le~L~i~~~~~~~~~~~w~~~--~~~c~~~~Lk~v~i~ 454 (513)
.+... ...+. ......+.|+.|.+...+.. +|... ...| ..+|+.+.+.
T Consensus 272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~----~~~i~~~~f~~-~~~l~~l~L~ 327 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ----YWEIQPSTFRC-VYVRAAVQLG 327 (330)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC----GGGSCGGGGTT-CCCGGGEEC-
T ss_pred CCcCCccChhhcCCcccccccccccceEeecCccc----ccccCcccccc-ccceeEEEec
Confidence 66321 11110 01123577888888765432 23222 2244 3667766654
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.39 E-value=1.5e-07 Score=104.89 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=40.3
Q ss_pred CCCCcCCCcccEEEEeeeecccc-CCC--ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 198 PESLCTSTTLEVLVLYSDFVINI-PPS--GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 198 p~~l~~~~~L~~L~L~~~~l~~~-~~~--~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
|..+..+++|++|+|++|.+.+. +.. ...+++|+.|+|+++.+.+......+.+++.|++|.| ..+.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L-s~N~ 159 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF-SSNQ 159 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE-ESSC
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC-CCCc
Confidence 55555667777777777766542 122 3456777777777766654322234566777777777 5553
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.35 E-value=3.7e-08 Score=101.79 Aligned_cols=119 Identities=15% Similarity=0.032 Sum_probs=87.7
Q ss_pred CCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEe-cC
Q 010332 200 SLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNIS-SP 278 (513)
Q Consensus 200 ~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~-~~ 278 (513)
.+..++.|++|+|+++.+.++ |....+++|+.|+|+++.+.+- . +..++.|++|++ .+|.. .++ .+. .+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~L-s~N~l-~~~---~~~~l~ 106 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLAC-DSNKL-TNL---DVTPLT 106 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEEC-CSSCC-SCC---CCTTCT
T ss_pred ChhHcCCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEEC-cCCCC-cee---ecCCCC
Confidence 344578999999999999887 4567899999999999988762 2 788999999999 88765 333 233 46
Q ss_pred ccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCeeEEEEE
Q 010332 279 TLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFID 335 (513)
Q Consensus 279 ~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~ 335 (513)
+|+.|.+.++ ... .. . .-..++|++|.+.++....+.+..+++|+.+++.
T Consensus 107 ~L~~L~L~~N--~l~---~l-~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 107 KLTYLNCDTN--KLT---KL-D-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCH 156 (457)
T ss_dssp TCCEEECCSS--CCS---CC-C-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECT
T ss_pred cCCEEECCCC--cCC---ee-c-CCCCCcCCEEECCCCccceeccccCCcCCEEECC
Confidence 8999999877 221 11 1 1255788888888876655566777777777664
No 66
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.35 E-value=5.7e-08 Score=95.13 Aligned_cols=221 Identities=12% Similarity=0.010 Sum_probs=140.9
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEEeCcchHH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYCLPNNLTE 246 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l~ 246 (513)
..++.|++. .+..- ...+|..+..+++|++|+|.++.+....| ....+++|++|+|+++.+.+ .+.
T Consensus 76 ~~L~~L~L~---------~~n~l---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p 142 (313)
T 1ogq_A 76 PYLNFLYIG---------GINNL---VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLP 142 (313)
T ss_dssp TTCSEEEEE---------EETTE---ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCC
T ss_pred CCCCeeeCC---------CCCcc---cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCC
Confidence 689999986 11100 23677778889999999999999874334 45689999999999998874 222
Q ss_pred HHhhcCCccceeEeeeeeeccCCceeEEE-ec-CccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEecccc---ce
Q 010332 247 RLFSACPVLEELSIVGLLVNADVVTNFNI-SS-PTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALV---SY 321 (513)
Q Consensus 247 ~lls~cp~Le~L~L~~~c~~~~~~~~l~i-~~-~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~---~~ 321 (513)
..+..++.|++|.+ ..+.. .+...-.+ .. ++|+.|.+.++ ... ....-.+...+|++|.++++... ..
T Consensus 143 ~~~~~l~~L~~L~L-~~N~l-~~~~p~~l~~l~~~L~~L~L~~N--~l~---~~~~~~~~~l~L~~L~Ls~N~l~~~~~~ 215 (313)
T 1ogq_A 143 PSISSLPNLVGITF-DGNRI-SGAIPDSYGSFSKLFTSMTISRN--RLT---GKIPPTFANLNLAFVDLSRNMLEGDASV 215 (313)
T ss_dssp GGGGGCTTCCEEEC-CSSCC-EEECCGGGGCCCTTCCEEECCSS--EEE---EECCGGGGGCCCSEEECCSSEEEECCGG
T ss_pred hHHhcCCCCCeEEC-cCCcc-cCcCCHHHhhhhhcCcEEECcCC--eee---ccCChHHhCCcccEEECcCCcccCcCCH
Confidence 34678999999999 87754 11100011 12 37899998776 110 00000112224999999887543 23
Q ss_pred eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEe
Q 010332 322 MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHI 401 (513)
Q Consensus 322 ~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~ 401 (513)
.+..+++|+.+++...... . . ...+..+++++.|+++.+.+.. ..+..+..+++|++|++..
T Consensus 216 ~~~~l~~L~~L~L~~N~l~-------------~-~-~~~~~~l~~L~~L~Ls~N~l~~---~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLA-------------F-D-LGKVGLSKNLNGLDLRNNRIYG---TLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp GCCTTSCCSEEECCSSEEC-------------C-B-GGGCCCCTTCCEEECCSSCCEE---CCCGGGGGCTTCCEEECCS
T ss_pred HHhcCCCCCEEECCCCcee-------------e-e-cCcccccCCCCEEECcCCcccC---cCChHHhcCcCCCEEECcC
Confidence 4567889999888543310 0 0 1115678999999999887764 3444456788999999976
Q ss_pred ccCCHHHHHHHHhcCCCcceEEEEecc
Q 010332 402 GGTSWKLLLAILNSLPNLEVLLIHSHA 428 (513)
Q Consensus 402 ~~~~~~~l~~lL~~~P~Le~L~i~~~~ 428 (513)
+.... .++.. ...|+|+.|.+...+
T Consensus 278 N~l~~-~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 278 NNLCG-EIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp SEEEE-ECCCS-TTGGGSCGGGTCSSS
T ss_pred Ccccc-cCCCC-ccccccChHHhcCCC
Confidence 53210 01111 566778877776644
No 67
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.34 E-value=3e-07 Score=102.52 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=43.0
Q ss_pred CcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEe-cC
Q 010332 201 LCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNIS-SP 278 (513)
Q Consensus 201 l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~-~~ 278 (513)
+..+++|+.|+|.++.+..+++. ..++++|+.|+|+++.+.+- ....+.++|.|+.|++ .++.. ..+..-.+. .+
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L-~~N~i-~~~~~~~~~~l~ 362 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYIDL-QKNHI-AIIQDQTFKFLE 362 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEEEC-CSCCC-CCCCSSCSCSCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEEEC-CCCCC-CccChhhhcCCC
Confidence 33456666666666666554332 34566666666666655431 1112455666666666 55433 211111111 24
Q ss_pred ccceEEEEee
Q 010332 279 TLKKLGIRFD 288 (513)
Q Consensus 279 ~Lr~L~i~~~ 288 (513)
+|+.|.+.++
T Consensus 363 ~L~~L~Ls~N 372 (844)
T 3j0a_A 363 KLQTLDLRDN 372 (844)
T ss_dssp CCCEEEEETC
T ss_pred CCCEEECCCC
Confidence 5555555554
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.34 E-value=1.8e-08 Score=98.71 Aligned_cols=84 Identities=20% Similarity=0.129 Sum_probs=48.5
Q ss_pred CCCcccEEEEeeeeccccCCC-c--cccCCcceEEeeeEEeCcc--hHHHHhh-cCCccceeEeeeeeeccCCceeEEE-
Q 010332 203 TSTTLEVLVLYSDFVINIPPS-G--LCFPCLKFLHIEMYCLPNN--LTERLFS-ACPVLEELSIVGLLVNADVVTNFNI- 275 (513)
Q Consensus 203 ~~~~L~~L~L~~~~l~~~~~~-~--~~~~~Lk~L~L~~~~~~~~--~l~~lls-~cp~Le~L~L~~~c~~~~~~~~l~i- 275 (513)
.+++|++|+|+++.+.+..|. . ..+++|+.|+|+++.+.+. .+..+.. .++.|++|+| .++.. .++..-.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L-~~N~l-~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI-AQAHS-LNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEE-ESCSC-CCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEe-eCCCC-ccchHHHhc
Confidence 467788888888887653233 2 5678888888888877652 2222211 1378888888 76644 22110011
Q ss_pred ecCccceEEEEee
Q 010332 276 SSPTLKKLGIRFD 288 (513)
Q Consensus 276 ~~~~Lr~L~i~~~ 288 (513)
..++|+.|.+.++
T Consensus 171 ~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 171 VFPALSTLDLSDN 183 (312)
T ss_dssp CCSSCCEEECCSC
T ss_pred cCCCCCEEECCCC
Confidence 2345555555554
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.33 E-value=4.4e-08 Score=93.93 Aligned_cols=208 Identities=14% Similarity=0.127 Sum_probs=104.3
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCcee
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTN 272 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~ 272 (513)
...+|..+. ++|++|+|+++.+..+++ ....+++|+.|+|+++.+..- ....+.+++.|++|+| .++.. ..
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L-~~n~l----~~ 90 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLIL-TGNPI----QS 90 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEEC-TTCCC----CE
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEEC-CCCcc----Cc
Confidence 344555432 467777777777766544 334677778887777766541 1123566777777777 66533 22
Q ss_pred EE---E-ecCccceEEEEeecCCCCCCCCcce-EEEeCCceeEEEEEeccccc----eeeccCCCeeEEEEEEEeecCCC
Q 010332 273 FN---I-SSPTLKKLGIRFDIGDQGSSYNEHK-ILIRAPNLERFHIIDHALVS----YMVHELHSLTEAFIDVSYFEWPS 343 (513)
Q Consensus 273 l~---i-~~~~Lr~L~i~~~~~~~~~~~~~~~-i~i~ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~~~~~~~ 343 (513)
+. + ..++|+.|.+.++ ... .... ..-..++|++|.++++.... ..+..+++|+.+++......
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n--~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~--- 162 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVET--NLA---SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ--- 162 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTS--CCC---CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC---
T ss_pred cChhhhcCCccccEEECCCC--Ccc---ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC---
Confidence 11 1 1256777776654 211 1111 11245677777777654322 13455666666665422100
Q ss_pred CCccCCCCchhhHHHHHccCCCcce-EEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceE
Q 010332 344 PSYVERPLPQAKRVLELLEGVNEIK-FMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVL 422 (513)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L 422 (513)
.........+..++.+. .|.++.+.+.. +.+..+ ...+|++|++..+.... ....++..+++|+.|
T Consensus 163 --------~~~~~~~~~l~~L~~l~l~L~ls~n~l~~---~~~~~~-~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 163 --------SIYCTDLRVLHQMPLLNLSLDLSLNPMNF---IQPGAF-KEIRLKELALDTNQLKS-VPDGIFDRLTSLQKI 229 (276)
T ss_dssp --------EECGGGGHHHHTCTTCCEEEECCSSCCCE---ECTTSS-CSCCEEEEECCSSCCSC-CCTTTTTTCCSCCEE
T ss_pred --------cCCHHHhhhhhhccccceeeecCCCcccc---cCcccc-CCCcccEEECCCCceee-cCHhHhcccccccEE
Confidence 00001112223333333 56666655543 222222 22357777775543210 011234567777777
Q ss_pred EEEecccC
Q 010332 423 LIHSHAVR 430 (513)
Q Consensus 423 ~i~~~~~~ 430 (513)
+|...+..
T Consensus 230 ~l~~N~~~ 237 (276)
T 2z62_A 230 WLHTNPWD 237 (276)
T ss_dssp ECCSSCBC
T ss_pred EccCCccc
Confidence 77765543
No 70
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=1.4e-07 Score=104.62 Aligned_cols=207 Identities=10% Similarity=0.029 Sum_probs=128.1
Q ss_pred cCCCCc--CCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEE-eCc----chHHHH---hhcCCccceeEeeeeee
Q 010332 197 LPESLC--TSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYC-LPN----NLTERL---FSACPVLEELSIVGLLV 265 (513)
Q Consensus 197 lp~~l~--~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~-~~~----~~l~~l---ls~cp~Le~L~L~~~c~ 265 (513)
+|..+. .+++|++|+|++|.+....| ....+++|+.|+|+++. +.+ ..+..+ +..+|.|+.|.| .+|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L-s~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM-GYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC-CSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe-eCCc
Confidence 888887 89999999999998765434 45689999999999997 654 223332 246679999999 8876
Q ss_pred ccCCcee--EEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEecccccee--eccCCC-eeEEEEEEEeec
Q 010332 266 NADVVTN--FNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYM--VHELHS-LTEAFIDVSYFE 340 (513)
Q Consensus 266 ~~~~~~~--l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~--~~~~p~-L~~~~l~~~~~~ 340 (513)
. ..+.. .--..++|+.|.+.++ ... ... ..-..++|+.|.++++....++ +..+++ |+.+++......
T Consensus 560 L-~~ip~~~~l~~L~~L~~L~Ls~N--~l~---~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 560 L-EEFPASASLQKMVKLGLLDCVHN--KVR---HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp C-CBCCCHHHHTTCTTCCEEECTTS--CCC---BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred C-CccCChhhhhcCCCCCEEECCCC--Ccc---cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC
Confidence 4 22222 1112468999999876 321 111 1225688999999987654332 556777 888877543310
Q ss_pred CCCCCccCCCCchhhHHHHHccCC--CcceEEEEEcchhhhhhhhcc--CCCC--CcCcccEEEEEeccCCHHHHHHHHh
Q 010332 341 WPSPSYVERPLPQAKRVLELLEGV--NEIKFMSLSAETMFALDLAYE--DFFP--TFPNLTYLEVHIGGTSWKLLLAILN 414 (513)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~l--~~l~~L~l~~~~~~~~~~~~~--~~~p--~~~~Lk~L~l~~~~~~~~~l~~lL~ 414 (513)
.+...+..+ ++++.|.++.+.+... +.. ..+. ...+|+.|++..+... ..-..++.
T Consensus 633 ---------------~lp~~~~~~~~~~L~~L~Ls~N~l~g~--ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~ 694 (876)
T 4ecn_A 633 ---------------YIPNIFNAKSVYVMGSVDFSYNKIGSE--GRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFA 694 (876)
T ss_dssp ---------------SCCSCCCTTCSSCEEEEECCSSCTTTT--SSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHH
T ss_pred ---------------cCchhhhccccCCCCEEECcCCcCCCc--cccchhhhccccCCCcCEEEccCCcCC-ccCHHHHc
Confidence 111222333 3488888888766541 111 1111 3347888877665432 11123455
Q ss_pred cCCCcceEEEEeccc
Q 010332 415 SLPNLEVLLIHSHAV 429 (513)
Q Consensus 415 ~~P~Le~L~i~~~~~ 429 (513)
.+|+|+.|.|..+..
T Consensus 695 ~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 695 TGSPISTIILSNNLM 709 (876)
T ss_dssp TTCCCSEEECCSCCC
T ss_pred cCCCCCEEECCCCcC
Confidence 778888888876543
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.30 E-value=5.1e-08 Score=93.28 Aligned_cols=122 Identities=15% Similarity=0.037 Sum_probs=72.6
Q ss_pred CcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEE-EecCccceE
Q 010332 205 TTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFN-ISSPTLKKL 283 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~-i~~~~Lr~L 283 (513)
..++.+++.+..+..+|.. . .++|++|+|+++.+..- ....+.+++.|++|.| .++.. ..+..-. -..++|+.|
T Consensus 16 ~~~~~l~~~~~~l~~ip~~-~-~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l-~~n~l-~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSN-I-PADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYL-NDNKL-QTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSCCSSCCSC-C-CTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEEC-CSSCC-SCCCTTTTSSCTTCCEE
T ss_pred CCCCEEEccCCCCCccCCC-C-CCCCCEEECcCCCCCee-CHHHhcCCCCCCEEEC-CCCcc-CeeChhhhcCCCCCCEE
Confidence 3578999999988876432 2 36899999999988751 1124678999999999 77654 2221111 123678888
Q ss_pred EEEeecCCCCCCCCcceEEEeCCceeEEEEEecccccee---eccCCCeeEEEEE
Q 010332 284 GIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYM---VHELHSLTEAFID 335 (513)
Q Consensus 284 ~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~---~~~~p~L~~~~l~ 335 (513)
.+.++ ... .......-..++|++|.+.++...... +..+++|+.+++.
T Consensus 91 ~l~~n--~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 91 WVTDN--KLQ--ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141 (270)
T ss_dssp ECCSS--CCC--CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ECCCC--cCC--cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC
Confidence 88765 211 000001123567788777776433221 3445555555553
No 72
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.29 E-value=2.6e-08 Score=99.64 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=39.9
Q ss_pred HHHHHccCC-CcceEEEEEcchhhhhhhh-ccCCCCC-cCcccEEEEEeccC---CHHHHHHHHhcCCCcceEEEEecc
Q 010332 356 RVLELLEGV-NEIKFMSLSAETMFALDLA-YEDFFPT-FPNLTYLEVHIGGT---SWKLLLAILNSLPNLEVLLIHSHA 428 (513)
Q Consensus 356 ~~~~~l~~l-~~l~~L~l~~~~~~~~~~~-~~~~~p~-~~~Lk~L~l~~~~~---~~~~l~~lL~~~P~Le~L~i~~~~ 428 (513)
.+...+..+ ++++.|+++.+.+...... ....+.. .++|++|+|..+.. ....+..+++.+++|+.|.+..+.
T Consensus 186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 445555555 3777777776655431000 0001112 24677777766532 335566666777777777777655
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.29 E-value=9e-08 Score=104.01 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=16.8
Q ss_pred ccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeC
Q 010332 207 LEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLP 241 (513)
Q Consensus 207 L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~ 241 (513)
|+.|+|++|.+..+++. ...+++|++|+|.++.+.
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccC
Confidence 55555555554443322 234555555555554443
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.28 E-value=5e-07 Score=96.66 Aligned_cols=55 Identities=25% Similarity=0.128 Sum_probs=31.5
Q ss_pred CCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeec
Q 010332 203 TSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVN 266 (513)
Q Consensus 203 ~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~ 266 (513)
..++|++|+|++|.+..++. .+++|++|+|.++.+.. +-..++.|++|+| .+|..
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-----lp~~l~~L~~L~L-s~N~l 153 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-----LPVLPPGLQELSV-SDNQL 153 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSC-----CCCCCTTCCEEEC-CSSCC
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCc-----CCCCCCCCCEEEC-cCCcC
Confidence 34667777777776665533 45666666666655543 1112466777776 55543
No 75
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.25 E-value=2.9e-07 Score=89.12 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=30.3
Q ss_pred cCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 202 CTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 202 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
..+++|++|+|++|.+..+++ ...+++|+.|+|.++.+.+ +.. +..++.|++|++ .+|.
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L-~~n~ 123 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSL-EHNG 123 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEEC-TTSC
T ss_pred hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEEC-CCCc
Confidence 335555666666555554422 3445555666655555543 111 455555555555 4443
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.24 E-value=1.2e-06 Score=92.86 Aligned_cols=58 Identities=14% Similarity=0.073 Sum_probs=26.1
Q ss_pred CcccEEEEeeeeccccCC-CccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeee
Q 010332 205 TTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLL 264 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c 264 (513)
++|++|+|+++.+..+++ ...++++|++|+|+++.+.+- ....+.+++.|++|+| .++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L-s~N 110 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDV-SHN 110 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEEC-TTS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEEC-CCC
Confidence 445555555555544432 223455555555555544330 0112344555555555 444
No 77
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.24 E-value=3.4e-08 Score=97.52 Aligned_cols=201 Identities=11% Similarity=0.071 Sum_probs=99.3
Q ss_pred CCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCC--ceeEEE
Q 010332 198 PESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADV--VTNFNI 275 (513)
Q Consensus 198 p~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~--~~~l~i 275 (513)
|..+..+++|++|+|+++.+..+|+.. +++|++|+|.++.+.. .....+.+++.|+.|.+ ..+.. .. .....+
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~--~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l-~~n~l-~~~~~~~~~~ 169 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEM-GGNPL-ENSGFEPGAF 169 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCCSCCSSC--CTTCCEEECCSSCCCC-CCSGGGSSCSSCCEEEC-CSCCC-BGGGSCTTSS
T ss_pred HhHhhCcCCCCEEECCCCcCCccCccc--cccCCEEECCCCccCc-cCHhHhCCCccCCEEEC-CCCcc-ccCCCCcccc
Confidence 344455677777777777766553322 2677777777766654 11123566777777777 65543 10 111111
Q ss_pred ecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccce---eeccCCCeeEEEEEEEeecCCCCCccCCCCc
Q 010332 276 SSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY---MVHELHSLTEAFIDVSYFEWPSPSYVERPLP 352 (513)
Q Consensus 276 ~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~ 352 (513)
...+|+.|.+.++ .... -.. ...++|++|.++++..... .+..+++|+.+++......
T Consensus 170 ~~l~L~~L~l~~n--~l~~--l~~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~------------ 230 (332)
T 2ft3_A 170 DGLKLNYLRISEA--KLTG--IPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR------------ 230 (332)
T ss_dssp CSCCCSCCBCCSS--BCSS--CCS---SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC------------
T ss_pred cCCccCEEECcCC--CCCc--cCc---cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC------------
Confidence 1225666666555 2110 000 0115677777666543322 2445666666655322200
Q ss_pred hhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCC---HHHHHH--HHhcCCCcceEEEEec
Q 010332 353 QAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTS---WKLLLA--ILNSLPNLEVLLIHSH 427 (513)
Q Consensus 353 ~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~---~~~l~~--lL~~~P~Le~L~i~~~ 427 (513)
......+..+++++.|.++.+.+.. + +..+..+++|++|++..+... ...+.. +....+.|+.|.+...
T Consensus 231 --~~~~~~~~~l~~L~~L~L~~N~l~~---l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 231 --MIENGSLSFLPTLRELHLDNNKLSR---V-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp --CCCTTGGGGCTTCCEEECCSSCCCB---C-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred --cCChhHhhCCCCCCEEECCCCcCee---c-ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecC
Confidence 0001124456777777777665543 2 222445667777777654321 111100 0112466777777665
Q ss_pred c
Q 010332 428 A 428 (513)
Q Consensus 428 ~ 428 (513)
+
T Consensus 305 ~ 305 (332)
T 2ft3_A 305 P 305 (332)
T ss_dssp S
T ss_pred c
Confidence 4
No 78
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=5.3e-07 Score=89.89 Aligned_cols=168 Identities=16% Similarity=0.125 Sum_probs=84.1
Q ss_pred ccCCcceEEeeeEEeC--------cchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEeecCCCCCCCC
Q 010332 226 CFPCLKFLHIEMYCLP--------NNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYN 297 (513)
Q Consensus 226 ~~~~Lk~L~L~~~~~~--------~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~~~~~~~~~~~ 297 (513)
.|++|+.|.+..+... ..++..++..+|.||+|.| ..|. +.....+..++|++|.+..| ... ...
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L-~g~~---~l~l~~~~~~~L~~L~L~~~--~l~-~~~ 209 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKI-KGTN---NLSIGKKPRPNLKSLEIISG--GLP-DSV 209 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEE-ECCB---TCBCCSCBCTTCSEEEEECS--BCC-HHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEE-eCCC---CceeccccCCCCcEEEEecC--CCC-hHH
Confidence 5677777777654321 1357788999999999999 7663 12111234678888888765 210 001
Q ss_pred cceEE-EeCCceeEEEEEeccccceeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHc--cCCCcceEEEEEc
Q 010332 298 EHKIL-IRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELL--EGVNEIKFMSLSA 374 (513)
Q Consensus 298 ~~~i~-i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~l~~L~l~~ 374 (513)
...+. ...|+|++|.++....... . + .....+...+ ..+++|+.|.+..
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~--~------------------------~--~~~~~l~~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYG--F------------------------D--GDMNVFRPLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGT--C------------------------C--SCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred HHHHHHccCCCCcEEEEeccccccc--c------------------------c--hhHHHHHHHHhcCCCCCcCEEeCCC
Confidence 11111 1457777777642100000 0 0 0000111122 2356777777765
Q ss_pred chhhhhhhhccCCCCCcCcccEEEEEeccCCHH---HHHHHHhcCCCcceEEEEecc
Q 010332 375 ETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWK---LLLAILNSLPNLEVLLIHSHA 428 (513)
Q Consensus 375 ~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~---~l~~lL~~~P~Le~L~i~~~~ 428 (513)
+.+.......-...|.+++|++|+|..+..... .+..-++++|+|+.|+|..+.
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 443321000000124566777777755543333 333334567777777776543
No 79
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=2e-07 Score=103.34 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=35.9
Q ss_pred cccCCCCcCCCcccEEEEeeee-ccc--cCCC-------ccccCCcceEEeeeEEeCcchHHH--HhhcCCccceeEeee
Q 010332 195 VELPESLCTSTTLEVLVLYSDF-VIN--IPPS-------GLCFPCLKFLHIEMYCLPNNLTER--LFSACPVLEELSIVG 262 (513)
Q Consensus 195 ~~lp~~l~~~~~L~~L~L~~~~-l~~--~~~~-------~~~~~~Lk~L~L~~~~~~~~~l~~--lls~cp~Le~L~L~~ 262 (513)
..+|..+..+++|+.|+|++|. +.+ +|.. ...+++|+.|+|.++.+. .+.. .+..++.|+.|.| .
T Consensus 505 ~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~L-s 581 (876)
T 4ecn_A 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDC-V 581 (876)
T ss_dssp CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEEC-T
T ss_pred ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEEC-C
Confidence 3555555566666666666665 443 2211 123346666666666554 2222 3555666666666 5
Q ss_pred eee
Q 010332 263 LLV 265 (513)
Q Consensus 263 ~c~ 265 (513)
++.
T Consensus 582 ~N~ 584 (876)
T 4ecn_A 582 HNK 584 (876)
T ss_dssp TSC
T ss_pred CCC
Confidence 543
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.22 E-value=4.3e-08 Score=95.84 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=29.0
Q ss_pred CcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecccC
Q 010332 365 NEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVR 430 (513)
Q Consensus 365 ~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~ 430 (513)
++++.|.++.+.+.. + +..+ +++|++|++..+... .+. .+..+|+|+.|++......
T Consensus 251 ~~L~~L~Ls~N~l~~---l-p~~~--~~~L~~L~Ls~N~l~--~~~-~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLEQ---V-PKGL--PAKLRVLDLSSNRLN--RAP-QPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCCS---C-CSCC--CSCCSCEECCSCCCC--SCC-CTTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCCc---h-hhhh--cCCCCEEECCCCcCC--CCc-hhhhCCCccEEECcCCCCC
Confidence 566666666655543 2 1112 256666666554321 111 1355667777766665543
No 81
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.20 E-value=7.6e-07 Score=80.70 Aligned_cols=58 Identities=21% Similarity=0.036 Sum_probs=42.0
Q ss_pred CCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 203 TSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 203 ~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
.+++|++|+|.++.+..++ ....+++|++|+|.++.+.+ +. -+..+|.|++|++ ..|.
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l-~~n~ 99 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN--YN-PISGLSNLERLRI-MGKD 99 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC--CG-GGTTCTTCCEEEE-ECTT
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc--ch-hhhcCCCCCEEEe-ECCc
Confidence 4577888888888887663 55678888888888886544 21 3667888888888 6654
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.19 E-value=7.2e-08 Score=92.36 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=62.5
Q ss_pred CCcCCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEE-ec
Q 010332 200 SLCTSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNI-SS 277 (513)
Q Consensus 200 ~l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i-~~ 277 (513)
.+..+++|++|+|++|.+..+++.. ..+++|++|+|.++.+.+ .....+..++.|++|.+ .+|.. .++..-.+ ..
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L-~~n~l-~~~~~~~~~~l 156 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNL-AHNQL-QSLPKGVFDKL 156 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC-CSSCC-CCCCTTTTTTC
T ss_pred hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc-cCHHHhccCCCCCEEEC-CCCcc-CccCHHHhccC
Confidence 4566899999999999998876554 579999999999998875 22234678999999999 88754 22211111 23
Q ss_pred CccceEEEEee
Q 010332 278 PTLKKLGIRFD 288 (513)
Q Consensus 278 ~~Lr~L~i~~~ 288 (513)
++|+.|.+.++
T Consensus 157 ~~L~~L~l~~n 167 (272)
T 3rfs_A 157 TNLTELDLSYN 167 (272)
T ss_dssp TTCCEEECCSS
T ss_pred ccCCEEECCCC
Confidence 56777777765
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.19 E-value=9.8e-08 Score=95.47 Aligned_cols=236 Identities=12% Similarity=0.134 Sum_probs=137.1
Q ss_pred CCCcccEEEEeeeeccccCC----Cc-cccC-CcceEEeeeEEeCc---chHHHHhhcC-CccceeEeeeeeeccCCcee
Q 010332 203 TSTTLEVLVLYSDFVINIPP----SG-LCFP-CLKFLHIEMYCLPN---NLTERLFSAC-PVLEELSIVGLLVNADVVTN 272 (513)
Q Consensus 203 ~~~~L~~L~L~~~~l~~~~~----~~-~~~~-~Lk~L~L~~~~~~~---~~l~~lls~c-p~Le~L~L~~~c~~~~~~~~ 272 (513)
..++|++|+|++|.+...++ .. ..++ +|++|+|+++.+.+ ..+..++..+ +.|++|+| .+|.. .+...
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L-s~n~l-~~~~~ 97 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL-SGNFL-SYKSS 97 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC-CSSCG-GGSCH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC-cCCcC-ChHHH
Confidence 34669999999999887543 22 3577 89999999998887 3455555555 99999999 88764 21111
Q ss_pred EE----Ee-c-CccceEEEEeecCCCCCCCCcceEE--Ee--CCceeEEEEEeccccceeeccCCCeeEEEEEEEeecCC
Q 010332 273 FN----IS-S-PTLKKLGIRFDIGDQGSSYNEHKIL--IR--APNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWP 342 (513)
Q Consensus 273 l~----i~-~-~~Lr~L~i~~~~~~~~~~~~~~~i~--i~--ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~ 342 (513)
.. +. . ++|+.|.+.++ ... +.....+. +. ..+|++|.++++....
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N--~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~---------------------- 152 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWN--DFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGI---------------------- 152 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSS--CGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGG----------------------
T ss_pred HHHHHHHHhCCCCccEEECcCC--cCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCH----------------------
Confidence 00 01 1 56777777665 210 00100000 00 1356665555542210
Q ss_pred CCCccCCCCchhhHHHHHccCCC-cceEEEEEcchhhhhhhhccC----CCCCc-CcccEEEEEeccC---CHHHHHHHH
Q 010332 343 SPSYVERPLPQAKRVLELLEGVN-EIKFMSLSAETMFALDLAYED----FFPTF-PNLTYLEVHIGGT---SWKLLLAIL 413 (513)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l~~~~~~~~~~~~~~----~~p~~-~~Lk~L~l~~~~~---~~~~l~~lL 413 (513)
.....+...+..++ +++.|.++.+.+.. .... .+..+ .+|++|+|..+.. ....+...+
T Consensus 153 ---------~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 153 ---------KSSDELIQILAAIPANVNSLNLRGNNLAS---KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp ---------SCHHHHHHHHHTSCTTCCEEECTTSCGGG---SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred ---------HHHHHHHHHHhcCCccccEeeecCCCCch---hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 12345566666666 99999999987654 2211 12344 5899999987742 455677777
Q ss_pred hc-CCCcceEEEEecccCCCCCccccCccccccccccEEEEEEec--CcHHHHHHHHHHHhcccCcCcEE
Q 010332 414 NS-LPNLEVLLIHSHAVRDSGFIFEEPVPRCLLFHVKKIEMRSFG--GYEHEFQLVKYFLKNIVSLEKLI 480 (513)
Q Consensus 414 ~~-~P~Le~L~i~~~~~~~~~~~w~~~~~~c~~~~Lk~v~i~~f~--g~~~e~~l~~~lL~~a~~Le~~~ 480 (513)
.. +++|+.|+|..+...+.+........ ....+|+.+.+.+-. +.. .+.+..+.+..+.+++++
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~-~~l~~L~~L~L~~n~l~~i~--~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLK-DSLKHLQTVYLDYDIVKNMS--KEQCKALGAAFPNIQKII 287 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHHHHHHTT-TTTTTCSEEEEEHHHHTTCC--HHHHHHHHTTSTTCCEEE
T ss_pred hcCCCCceEEECcCCCCCcHHHHHHHHHH-hcCCCccEEEeccCCccccC--HHHHHHHHHHhccCCceE
Confidence 76 56999999998765432210000000 123679999887432 111 123445555555555555
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.18 E-value=9.8e-07 Score=94.38 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=58.7
Q ss_pred CCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceE
Q 010332 204 STTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKL 283 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L 283 (513)
+++|++|+|++|.+..+|. .+++|+.|+|+++.+.. +. ..++.|+.|.+ .++.. .. +....++|+.|
T Consensus 80 l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~--l~---~~l~~L~~L~L-~~N~l-~~---lp~~l~~L~~L 146 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH--LP---ALPSGLCKLWI-FGNQL-TS---LPVLPPGLQEL 146 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC--CC---CCCTTCCEEEC-CSSCC-SC---CCCCCTTCCEE
T ss_pred CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC--CC---CCCCCcCEEEC-CCCCC-Cc---CCCCCCCCCEE
Confidence 4667777777777666533 56777777777766654 11 14567777777 66543 22 22223677777
Q ss_pred EEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCeeEEEE
Q 010332 284 GIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFI 334 (513)
Q Consensus 284 ~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l 334 (513)
.+.++ ... .+.-..++|+.|.+.++....+. ..+++|+.+++
T Consensus 147 ~Ls~N--~l~------~l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~L 188 (622)
T 3g06_A 147 SVSDN--QLA------SLPALPSELCKLWAYNNQLTSLP-MLPSGLQELSV 188 (622)
T ss_dssp ECCSS--CCS------CCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEEC
T ss_pred ECcCC--cCC------CcCCccCCCCEEECCCCCCCCCc-ccCCCCcEEEC
Confidence 77665 211 11112345555555554433332 33455555544
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.17 E-value=5.8e-07 Score=84.10 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=49.5
Q ss_pred CcccEEEEeeeeccccCCC-ccccCCcceEEeeeEE-eCcchHHHHhhcCCccceeEeeeeeeccCCceeEE---E-ecC
Q 010332 205 TTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYC-LPNNLTERLFSACPVLEELSIVGLLVNADVVTNFN---I-SSP 278 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~-~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~---i-~~~ 278 (513)
.+|+.|+|.++.+..+++. ..++++|++|+|.++. +.. --...+.+|+.|++|.+ .+|. .+..+. + ..+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l-~~~n---~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEI-RNTR---NLTYIDPDALKELP 105 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEE-EEET---TCCEECTTSEECCT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEEC-CCCC---CeeEcCHHHhCCCC
Confidence 3788888888888776553 3468888888888775 543 11113567888888888 7642 122221 1 235
Q ss_pred ccceEEEEee
Q 010332 279 TLKKLGIRFD 288 (513)
Q Consensus 279 ~Lr~L~i~~~ 288 (513)
+|+.|.+.++
T Consensus 106 ~L~~L~l~~n 115 (239)
T 2xwt_C 106 LLKFLGIFNT 115 (239)
T ss_dssp TCCEEEEEEE
T ss_pred CCCEEeCCCC
Confidence 6777777666
No 86
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.16 E-value=1.5e-07 Score=101.40 Aligned_cols=83 Identities=11% Similarity=0.069 Sum_probs=50.7
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEeeee-ccc--cCCCccc------cCCcceEEeeeE
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDF-VIN--IPPSGLC------FPCLKFLHIEMY 238 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~--~~~~~~~------~~~Lk~L~L~~~ 238 (513)
.+++.|++. .+.- ...+|..+..+++|++|+|++|. +.+ +|..... +++|+.|+|.++
T Consensus 249 ~~L~~L~L~----------~n~l---~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 249 KDLTDVEVY----------NCPN---LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TTCCEEEEE----------CCTT---CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred CCCCEEEec----------CCcC---CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 567777776 1111 34667777777788888888776 553 3222222 377777777777
Q ss_pred EeCcchHHH--HhhcCCccceeEeeeeeec
Q 010332 239 CLPNNLTER--LFSACPVLEELSIVGLLVN 266 (513)
Q Consensus 239 ~~~~~~l~~--lls~cp~Le~L~L~~~c~~ 266 (513)
.+. .+.. .+..++.|+.|.+ .++..
T Consensus 316 ~l~--~ip~~~~l~~l~~L~~L~L-~~N~l 342 (636)
T 4eco_A 316 NLK--TFPVETSLQKMKKLGMLEC-LYNQL 342 (636)
T ss_dssp CCS--SCCCHHHHTTCTTCCEEEC-CSCCC
T ss_pred cCC--ccCchhhhccCCCCCEEeC-cCCcC
Confidence 665 2322 4667777777777 66543
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.14 E-value=3e-07 Score=99.85 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=30.8
Q ss_pred CcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeee
Q 010332 205 TTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLL 264 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c 264 (513)
.+|+.|+|++|.+..+++. ...+++|+.|+|+++.+.+......+.+|+.|++|++ .+|
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L-s~n 440 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL-SYN 440 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC-CSC
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec-CCC
Confidence 4566666666665554332 2356666666666655433111122455666666666 554
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.14 E-value=3.3e-07 Score=97.88 Aligned_cols=165 Identities=13% Similarity=0.177 Sum_probs=78.8
Q ss_pred CCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceE
Q 010332 204 STTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKL 283 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L 283 (513)
...|+.|.|.++.+..+ +....+++|+.|+|+++.+.+-. . +..|+.|+.|.| ..|.. .++..+ -..++|+.|
T Consensus 42 L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~L-s~N~l-~~l~~l-~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFL-DENKI-KDLSSL-KDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEEC-CSSCC-CCCTTS-TTCTTCCEE
T ss_pred CCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEEC-cCCCC-CCChhh-ccCCCCCEE
Confidence 34555566666555544 33345666666666665554411 1 556666666666 55543 221110 012345555
Q ss_pred EEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccce-eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHcc
Q 010332 284 GIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY-MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLE 362 (513)
Q Consensus 284 ~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (513)
.+.++ ... ... -....|+|+.|.++++....+ .+..+++|+.++++.... .. +.. +.
T Consensus 115 ~Ls~N--~l~---~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l-------------~~--~~~-l~ 172 (605)
T 1m9s_A 115 SLEHN--GIS---DIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI-------------SD--IVP-LA 172 (605)
T ss_dssp ECTTS--CCC---CCG-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCC-------------CC--CGG-GT
T ss_pred EecCC--CCC---CCc-cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcC-------------CC--chh-hc
Confidence 55444 110 110 012457788888777644322 344566666665532220 00 000 45
Q ss_pred CCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEec
Q 010332 363 GVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIG 402 (513)
Q Consensus 363 ~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~ 402 (513)
.+++|+.|.|+.+.+.. + ..+..+++|+.|+|..+
T Consensus 173 ~l~~L~~L~Ls~N~i~~---l--~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISD---L--RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp TCTTCCEEECCSSCCCB---C--GGGTTCTTCSEEECCSE
T ss_pred cCCCCCEEECcCCCCCC---C--hHHccCCCCCEEEccCC
Confidence 56666666666654443 1 11334555666665443
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.13 E-value=1.8e-07 Score=89.57 Aligned_cols=198 Identities=16% Similarity=0.136 Sum_probs=123.8
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCC-CCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPE-SLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLT 245 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l 245 (513)
.+++.|++. ... ...++. .+..+++|++|+|.++.+..+++. ...+++|++|+|+++.+..-.
T Consensus 28 ~~l~~L~ls----------~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~- 92 (276)
T 2z62_A 28 FSTKNLDLS----------FNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA- 92 (276)
T ss_dssp TTCCEEECT----------TCC----CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-
T ss_pred CCccEEECC----------CCc----ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-
Confidence 478888875 110 234444 556689999999999998877553 457999999999999876521
Q ss_pred HHHhhcCCccceeEeeeeeeccCCceeEEEe-cCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccce---
Q 010332 246 ERLFSACPVLEELSIVGLLVNADVVTNFNIS-SPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY--- 321 (513)
Q Consensus 246 ~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~-~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~--- 321 (513)
...+.+++.|++|.+ .++.. ..+....+. .++|+.|.+.++ .... .......-..++|++|.++++.....
T Consensus 93 ~~~~~~l~~L~~L~l-~~n~l-~~~~~~~~~~l~~L~~L~l~~n--~l~~-~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 93 LGAFSGLSSLQKLVA-VETNL-ASLENFPIGHLKTLKELNVAHN--LIQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp TTTTTTCTTCCEEEC-TTSCC-CCSTTCCCTTCTTCCEEECCSS--CCCC-CCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred hhhhcCCccccEEEC-CCCCc-cccCchhcccCCCCCEEECcCC--ccce-ecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 134678999999999 87765 333322232 468999999876 2210 00111122458999999998765433
Q ss_pred eeccCCCee----EEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEE
Q 010332 322 MVHELHSLT----EAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYL 397 (513)
Q Consensus 322 ~~~~~p~L~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L 397 (513)
.+..+++|+ .+++.... + . .+........+++.|+++.+.+.. +....+..+++|++|
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~--------l-----~--~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNP--------M-----N--FIQPGAFKEIRLKELALDTNQLKS---VPDGIFDRLTSLQKI 229 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSC--------C-----C--EECTTSSCSCCEEEEECCSSCCSC---CCTTTTTTCCSCCEE
T ss_pred HhhhhhhccccceeeecCCCc--------c-----c--ccCccccCCCcccEEECCCCceee---cCHhHhcccccccEE
Confidence 233344444 33332111 0 0 000111123479999999887765 444445678899999
Q ss_pred EEEecc
Q 010332 398 EVHIGG 403 (513)
Q Consensus 398 ~l~~~~ 403 (513)
++..+.
T Consensus 230 ~l~~N~ 235 (276)
T 2z62_A 230 WLHTNP 235 (276)
T ss_dssp ECCSSC
T ss_pred EccCCc
Confidence 997653
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.11 E-value=1.4e-06 Score=81.38 Aligned_cols=103 Identities=10% Similarity=0.078 Sum_probs=68.9
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCC-CCcCCCcccEEEEeeee-ccccCCC-ccccCCcceEEeee-EEeCcc
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPE-SLCTSTTLEVLVLYSDF-VINIPPS-GLCFPCLKFLHIEM-YCLPNN 243 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-l~~~~~~-~~~~~~Lk~L~L~~-~~~~~~ 243 (513)
..++.|++. ... ...+|. .+..+++|++|+|.++. +..+++. ..++++|+.|+|.+ ..+..
T Consensus 31 ~~l~~L~l~----------~n~----l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~- 95 (239)
T 2xwt_C 31 PSTQTLKLI----------ETH----LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY- 95 (239)
T ss_dssp TTCCEEEEE----------SCC----CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-
T ss_pred CcccEEEEe----------CCc----ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-
Confidence 478888887 110 345555 44568999999999996 7777553 45899999999998 55543
Q ss_pred hHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccc---eEEEEee
Q 010332 244 LTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLK---KLGIRFD 288 (513)
Q Consensus 244 ~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr---~L~i~~~ 288 (513)
.-...+.+|+.|++|.+ .++.. .++.. --..++|+ .|.+.++
T Consensus 96 i~~~~f~~l~~L~~L~l-~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGI-FNTGL-KMFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp ECTTSEECCTTCCEEEE-EEECC-CSCCC-CTTCCBCCSEEEEEEESC
T ss_pred cCHHHhCCCCCCCEEeC-CCCCC-ccccc-cccccccccccEEECCCC
Confidence 11124678999999999 88865 33332 11123455 6666654
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.01 E-value=1.9e-06 Score=78.05 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=64.1
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTER 247 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~ 247 (513)
.+++.|++. +.. ...+| .+..+++|++|+|++|.+..+ +....+++|++|+|+++.+.+....
T Consensus 44 ~~L~~L~l~----------~n~----i~~l~-~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~- 106 (197)
T 4ezg_A 44 NSLTYITLA----------NIN----VTDLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIP- 106 (197)
T ss_dssp HTCCEEEEE----------SSC----CSCCT-TGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSC-
T ss_pred CCccEEecc----------CCC----ccChH-HHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccCh-
Confidence 467778876 110 23455 466678889999988876653 3445688888998888777642222
Q ss_pred HhhcCCccceeEeeeeeeccCC--ceeEEEecCccceEEEEee
Q 010332 248 LFSACPVLEELSIVGLLVNADV--VTNFNISSPTLKKLGIRFD 288 (513)
Q Consensus 248 lls~cp~Le~L~L~~~c~~~~~--~~~l~i~~~~Lr~L~i~~~ 288 (513)
-+..+|.|+.|.+ .+|.. .+ ...+ -..++|+.|.+.+|
T Consensus 107 ~l~~l~~L~~L~L-s~n~i-~~~~~~~l-~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 107 NLSGLTSLTLLDI-SHSAH-DDSILTKI-NTLPKVNSIDLSYN 146 (197)
T ss_dssp CCTTCTTCCEEEC-CSSBC-BGGGHHHH-TTCSSCCEEECCSC
T ss_pred hhcCCCCCCEEEe-cCCcc-CcHhHHHH-hhCCCCCEEEccCC
Confidence 2667888888888 77654 21 1111 12356777777665
No 92
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.99 E-value=1.9e-06 Score=75.83 Aligned_cols=105 Identities=18% Similarity=0.077 Sum_probs=71.9
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTER 247 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~ 247 (513)
.+++.|++. ++.- ....+|..+..+++|++|+|.+|.+..+ .....+++|+.|+|+++.+.+. +..
T Consensus 24 ~~L~~L~l~----------~n~l--~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~ 89 (168)
T 2ell_A 24 AAVRELVLD----------NCKS--NDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG-LDM 89 (168)
T ss_dssp TSCSEEECC----------SCBC--BTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-CCH
T ss_pred ccCCEEECC----------CCCC--ChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-HHH
Confidence 578888876 2110 0126777767789999999999988776 5556789999999999988753 556
Q ss_pred HhhcCCccceeEeeeeeeccCCcee--EEEecCccceEEEEee
Q 010332 248 LFSACPVLEELSIVGLLVNADVVTN--FNISSPTLKKLGIRFD 288 (513)
Q Consensus 248 lls~cp~Le~L~L~~~c~~~~~~~~--l~i~~~~Lr~L~i~~~ 288 (513)
++..+|.|+.|+| .+|.. .++.. .--..++|+.|.+.++
T Consensus 90 ~~~~l~~L~~L~L-s~N~l-~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 90 LAEKLPNLTHLNL-SGNKL-KDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp HHHHCTTCCEEEC-BSSSC-CSSGGGGGGSSCSCCCEEECCSS
T ss_pred HHhhCCCCCEEec-cCCcc-CcchhHHHHhcCCCCCEEEeeCC
Confidence 6778999999999 87754 32211 1112355666666655
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.97 E-value=1.7e-06 Score=82.36 Aligned_cols=79 Identities=15% Similarity=0.082 Sum_probs=56.4
Q ss_pred cCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccc
Q 010332 202 CTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLK 281 (513)
Q Consensus 202 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr 281 (513)
..+++|++|+|.++.+..+ +....+++|+.|+|+++.+.+-. . +..++.|++|+| .++.. .++..+.. ++|+
T Consensus 38 ~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L-~~N~l-~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSV-NRNRL-KNLNGIPS--ACLS 109 (263)
T ss_dssp HHHTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEEC-CSSCC-SCCTTCCC--SSCC
T ss_pred hhcCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEEC-CCCcc-CCcCcccc--Cccc
Confidence 3467889999999888776 35567889999999988887621 1 788899999999 77765 33322221 6677
Q ss_pred eEEEEee
Q 010332 282 KLGIRFD 288 (513)
Q Consensus 282 ~L~i~~~ 288 (513)
.|.+.++
T Consensus 110 ~L~L~~N 116 (263)
T 1xeu_A 110 RLFLDNN 116 (263)
T ss_dssp EEECCSS
T ss_pred EEEccCC
Confidence 7777665
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.96 E-value=2.8e-06 Score=82.13 Aligned_cols=167 Identities=13% Similarity=0.167 Sum_probs=112.5
Q ss_pred CCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccce
Q 010332 203 TSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKK 282 (513)
Q Consensus 203 ~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~ 282 (513)
.++.|+.|++.++.+..+ +....+++|+.|+|+++.+.+- .. +..++.|++|.+ .++.. .++.. --..++|+.
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l-~~n~l-~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFL-DENKV-KDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEEC-CSSCC-CCGGG-GTTCTTCCE
T ss_pred hcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEEC-CCCcC-CCChh-hccCCCCCE
Confidence 357788899988888776 4456789999999998888762 12 788899999999 77755 33322 112367888
Q ss_pred EEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccce-eeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHc
Q 010332 283 LGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY-MVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELL 361 (513)
Q Consensus 283 L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 361 (513)
|.+.++ ... ... .....++|++|.++++..... .+..+++|+.++++.... .. +.. +
T Consensus 117 L~L~~n--~i~---~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l-------------~~--~~~-l 174 (291)
T 1h6t_A 117 LSLEHN--GIS---DIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI-------------SD--IVP-L 174 (291)
T ss_dssp EECTTS--CCC---CCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC-------------CC--CGG-G
T ss_pred EECCCC--cCC---CCh-hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcc-------------cc--chh-h
Confidence 888776 221 111 112568899999888754333 356788888887753321 11 011 6
Q ss_pred cCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEecc
Q 010332 362 EGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGG 403 (513)
Q Consensus 362 ~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~ 403 (513)
..+++++.|.++.+.+.. +. .+..+++|+.|++..+.
T Consensus 175 ~~l~~L~~L~L~~N~i~~---l~--~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD---LR--ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCTTCCEEECCSSCCCB---CG--GGTTCTTCSEEEEEEEE
T ss_pred cCCCccCEEECCCCcCCC---Ch--hhccCCCCCEEECcCCc
Confidence 778899999999887765 22 25578889999987763
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.95 E-value=1.8e-06 Score=91.25 Aligned_cols=186 Identities=14% Similarity=0.121 Sum_probs=117.3
Q ss_pred hCCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHH
Q 010332 167 MRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTE 246 (513)
Q Consensus 167 ~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~ 246 (513)
..+++.|++. ... ...+|..++ ++|+.|+|++|.+..+| ..+++|+.|+|+++.+.. +.
T Consensus 58 ~~~L~~L~Ls---------~n~-----L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~--ip 116 (571)
T 3cvr_A 58 INQFSELQLN---------RLN-----LSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST--LP 116 (571)
T ss_dssp HTTCSEEECC---------SSC-----CSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CC
T ss_pred cCCccEEEeC---------CCC-----CCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC--cc
Confidence 4588888886 111 335777664 78999999999998774 458999999999998875 22
Q ss_pred HHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccC
Q 010332 247 RLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHEL 326 (513)
Q Consensus 247 ~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~ 326 (513)
. +.. .|+.|.| .++.. .++.. ..++|+.|.+.++ ... . +.-..++|++|.++++....++.. .
T Consensus 117 ~-l~~--~L~~L~L-s~N~l-~~lp~---~l~~L~~L~Ls~N--~l~---~---lp~~l~~L~~L~Ls~N~L~~lp~l-~ 179 (571)
T 3cvr_A 117 E-LPA--SLKHLDV-DNNQL-TMLPE---LPALLEYINADNN--QLT---M---LPELPTSLEVLSVRNNQLTFLPEL-P 179 (571)
T ss_dssp C-CCT--TCCEEEC-CSSCC-SCCCC---CCTTCCEEECCSS--CCS---C---CCCCCTTCCEEECCSSCCSCCCCC-C
T ss_pred h-hhc--CCCEEEC-CCCcC-CCCCC---cCccccEEeCCCC--ccC---c---CCCcCCCcCEEECCCCCCCCcchh-h
Confidence 2 322 9999999 88765 44433 4678999999887 321 1 111568999999998864433221 1
Q ss_pred CCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCC
Q 010332 327 HSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTS 405 (513)
Q Consensus 327 p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~ 405 (513)
++|+.++++..... . .+... ..+....+.++.|.++.+.+.. +.. .+..+++|+.|+|..+...
T Consensus 180 ~~L~~L~Ls~N~L~-----~----lp~~~--~~L~~~~~~L~~L~Ls~N~l~~---lp~-~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 180 ESLEALDVSTNLLE-----S----LPAVP--VRNHHSEETEIFFRCRENRITH---IPE-NILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp TTCCEEECCSSCCS-----S----CCCCC----------CCEEEECCSSCCCC---CCG-GGGGSCTTEEEECCSSSCC
T ss_pred CCCCEEECcCCCCC-----c----hhhHH--HhhhcccccceEEecCCCccee---cCH-HHhcCCCCCEEEeeCCcCC
Confidence 67888877543310 0 00000 0122222334899998877664 322 2335788999998776543
No 96
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.93 E-value=1.2e-06 Score=84.69 Aligned_cols=194 Identities=14% Similarity=0.141 Sum_probs=105.1
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCcee
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTN 272 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~ 272 (513)
...+|..++ ++|+.|+|.++.+..+++. ...+++|+.|+|.++.+..-.. ...++.|+.|+| .++.. ..+..
T Consensus 22 l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L-s~N~l-~~l~~ 94 (290)
T 1p9a_G 22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDL-SHNQL-QSLPL 94 (290)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEEC-CSSCC-SSCCC
T ss_pred CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEEC-CCCcC-CcCch
Confidence 345565543 5788888888887765433 3568888888888887765111 167888888888 76654 22222
Q ss_pred EEEecCccceEEEEeecCCCCCCCCcc-eEEEeCCceeEEEEEecccccee---eccCCCeeEEEEEEEeecCCCCCccC
Q 010332 273 FNISSPTLKKLGIRFDIGDQGSSYNEH-KILIRAPNLERFHIIDHALVSYM---VHELHSLTEAFIDVSYFEWPSPSYVE 348 (513)
Q Consensus 273 l~i~~~~Lr~L~i~~~~~~~~~~~~~~-~i~i~ap~L~~L~l~~~~~~~~~---~~~~p~L~~~~l~~~~~~~~~~~~~~ 348 (513)
.....++|+.|.+.++ ... ... ...-..++|++|.++++....+. +..+++|+.+++.....
T Consensus 95 ~~~~l~~L~~L~l~~N--~l~---~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l--------- 160 (290)
T 1p9a_G 95 LGQTLPALTVLDVSFN--RLT---SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL--------- 160 (290)
T ss_dssp CTTTCTTCCEEECCSS--CCC---CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC---------
T ss_pred hhccCCCCCEEECCCC--cCc---ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC---------
Confidence 1112356777777665 211 000 01113467777777776543322 34456666665532210
Q ss_pred CCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEecc----CCHHHHHHHHhcCC
Q 010332 349 RPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGG----TSWKLLLAILNSLP 417 (513)
Q Consensus 349 ~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~----~~~~~l~~lL~~~P 417 (513)
.......+..+++++.|.++.+.+.. +. ..+....+|++|.+..+. .+...+...++.-+
T Consensus 161 -----~~l~~~~~~~l~~L~~L~L~~N~l~~---ip-~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 161 -----TELPAGLLNGLENLDTLLLQENSLYT---IP-KGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNA 224 (290)
T ss_dssp -----SCCCTTTTTTCTTCCEEECCSSCCCC---CC-TTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred -----CccCHHHhcCcCCCCEEECCCCcCCc---cC-hhhcccccCCeEEeCCCCccCcCccHHHHHHHHhCc
Confidence 00001234456677777777665553 22 222244567777765432 23344555555433
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.93 E-value=1.3e-06 Score=82.39 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=47.8
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeec
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVN 266 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~ 266 (513)
...+|..+. ++|+.|+|.++.+..+++. ...+++|+.|+|+++.+.+ .....+..++.|++|+| .++..
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L-~~n~l 95 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGL-ANNQL 95 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC-TTSCC
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEEC-CCCcc
Confidence 345565443 5788888888888776553 3568888888888887765 12234667888888888 66543
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.92 E-value=1.2e-06 Score=93.46 Aligned_cols=151 Identities=14% Similarity=0.210 Sum_probs=103.8
Q ss_pred CCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCc
Q 010332 200 SLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPT 279 (513)
Q Consensus 200 ~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~ 279 (513)
.+..+++|+.|+|++|.+..+++ ...+++|+.|+|+++.+.+ +. -+..|+.|+.|.| ..|.. ..+.. ....++
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~L-s~N~l-~~l~~-l~~l~~ 132 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSL-EHNGI-SDING-LVHLPQ 132 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEEC-TTSCC-CCCGG-GGGCTT
T ss_pred HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEe-cCCCC-CCCcc-ccCCCc
Confidence 45668899999999998887644 5678999999999888765 22 3678899999999 77765 33321 112468
Q ss_pred cceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccc-eeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHH
Q 010332 280 LKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVS-YMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVL 358 (513)
Q Consensus 280 Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~-~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 358 (513)
|+.|.+.++ ... .. ...-..++|+.|.++++.... ..+..+++|+.+++..... .. +
T Consensus 133 L~~L~Ls~N--~l~---~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i-------------~~--l- 190 (605)
T 1m9s_A 133 LESLYLGNN--KIT---DI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI-------------SD--L- 190 (605)
T ss_dssp CSEEECCSS--CCC---CC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-------------CB--C-
T ss_pred cCEEECCCC--ccC---Cc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCC-------------CC--C-
Confidence 899998877 321 11 112256889999998875432 2367888999888854331 11 1
Q ss_pred HHccCCCcceEEEEEcchhhh
Q 010332 359 ELLEGVNEIKFMSLSAETMFA 379 (513)
Q Consensus 359 ~~l~~l~~l~~L~l~~~~~~~ 379 (513)
..+..+++|+.|.|+.+.+..
T Consensus 191 ~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GGGTTCTTCSEEECCSEEEEC
T ss_pred hHHccCCCCCEEEccCCcCcC
Confidence 236778999999998876543
No 99
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=3.1e-06 Score=74.58 Aligned_cols=93 Identities=13% Similarity=0.039 Sum_probs=62.4
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccC-CCccccCCcceEEeeeEE-eCcchHHHHhh---cCCccceeEeeeeeec--
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIP-PSGLCFPCLKFLHIEMYC-LPNNLTERLFS---ACPVLEELSIVGLLVN-- 266 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~-~~~~~~~~Lk~L~L~~~~-~~~~~l~~lls---~cp~Le~L~L~~~c~~-- 266 (513)
...+|......-.|++|+|++|.+.+.- ....+|++|++|+|++|. +++..+..+-. .|+.||+|+| ..|..
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~L-s~C~~IT 128 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI-ISCGNVT 128 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEE-ESCTTCC
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEc-CCCCcCC
Confidence 4577765444567999999999876521 122478999999999985 88888887765 3789999999 88852
Q ss_pred cCCceeEEEecCccceEEEEee
Q 010332 267 ADVVTNFNISSPTLKKLGIRFD 288 (513)
Q Consensus 267 ~~~~~~l~i~~~~Lr~L~i~~~ 288 (513)
+.++..+. ..++|++|.+.+|
T Consensus 129 D~Gl~~L~-~~~~L~~L~L~~c 149 (176)
T 3e4g_A 129 DKGIIALH-HFRNLKYLFLSDL 149 (176)
T ss_dssp HHHHHHGG-GCTTCCEEEEESC
T ss_pred HHHHHHHh-cCCCCCEEECCCC
Confidence 22333332 2455555555554
No 100
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.90 E-value=5.5e-06 Score=79.01 Aligned_cols=37 Identities=35% Similarity=0.721 Sum_probs=34.5
Q ss_pred CcccCCCChHHHHHHhcCCchhhhh-hhhhhhhhhHHh
Q 010332 26 EDRISRLPDPILCHILSFLPAKHAV-ATRILSSRWNLV 62 (513)
Q Consensus 26 ~D~is~LPd~iL~~Ils~Lp~kda~-rts~lSrRWr~l 62 (513)
...+..||||||..||++||.++++ |++.|||+||++
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 3468899999999999999999999 999999999976
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.84 E-value=7.7e-07 Score=83.98 Aligned_cols=79 Identities=11% Similarity=0.037 Sum_probs=52.4
Q ss_pred CcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEE-ecCccceE
Q 010332 205 TTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNI-SSPTLKKL 283 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i-~~~~Lr~L 283 (513)
...+++++.++.+..+|... .++|+.|+|.++.+.+- ....+.+++.|++|+| .++.. .++..-.+ ..++|+.|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L-~~n~l-~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATL-SDATFRGLTKLTWLNL-DYNQL-QTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEEC-TTSCC-CCCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCcc-CHhHhcCcccCCEEEC-CCCcC-CccCHhHhccCCcCCEE
Confidence 56788999999888764322 37899999999988761 1223678999999999 77654 22111001 12456666
Q ss_pred EEEee
Q 010332 284 GIRFD 288 (513)
Q Consensus 284 ~i~~~ 288 (513)
.+.++
T Consensus 89 ~L~~n 93 (251)
T 3m19_A 89 GLANN 93 (251)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 66554
No 102
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.80 E-value=3.2e-06 Score=82.52 Aligned_cols=197 Identities=15% Similarity=0.102 Sum_probs=118.5
Q ss_pred HHHHhCCceEEEEEeecCCccceeeccCCCcccccCCCC--cCCCcccEEEEeeeeccccCCCcccc-----CCcceEEe
Q 010332 163 SSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESL--CTSTTLEVLVLYSDFVINIPPSGLCF-----PCLKFLHI 235 (513)
Q Consensus 163 ~~a~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~l~~~~~~~~~~-----~~Lk~L~L 235 (513)
....-.++++|++. +..- ...+|..+ ..+++|++|+|+++.+...|.....+ ++|++|+|
T Consensus 90 ~~~~l~~L~~L~L~----------~n~l---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L 156 (312)
T 1wwl_A 90 RVLGISGLQELTLE----------NLEV---TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156 (312)
T ss_dssp HHHTTSCCCEEEEE----------EEBC---BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEE
T ss_pred HhcCcCCccEEEcc----------CCcc---cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEe
Confidence 33334788888887 2210 23566665 45788999999999888763222344 88999999
Q ss_pred eeEEeCcchHHHHhhcCCccceeEeeeeeeccCCc----eeEE-EecCccceEEEEeecCCCCCCCCcceE----EEeCC
Q 010332 236 EMYCLPNNLTERLFSACPVLEELSIVGLLVNADVV----TNFN-ISSPTLKKLGIRFDIGDQGSSYNEHKI----LIRAP 306 (513)
Q Consensus 236 ~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~----~~l~-i~~~~Lr~L~i~~~~~~~~~~~~~~~i----~i~ap 306 (513)
+++.+.+- ....+..++.|++|+| .++.. .+. ..+. -..++|+.|.+.++ .. .....+ .-..+
T Consensus 157 ~~N~l~~~-~~~~~~~l~~L~~L~L-s~N~l-~~~~~~~~~~~~~~l~~L~~L~L~~N--~l---~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 157 AQAHSLNF-SCEQVRVFPALSTLDL-SDNPE-LGERGLISALCPLKFPTLQVLALRNA--GM---ETPSGVCSALAAARV 228 (312)
T ss_dssp ESCSCCCC-CTTTCCCCSSCCEEEC-CSCTT-CHHHHHHHHSCTTSCTTCCEEECTTS--CC---CCHHHHHHHHHHTTC
T ss_pred eCCCCccc-hHHHhccCCCCCEEEC-CCCCc-CcchHHHHHHHhccCCCCCEEECCCC--cC---cchHHHHHHHHhcCC
Confidence 98887651 1123667889999999 77642 110 0111 22367888888776 21 111111 11347
Q ss_pred ceeEEEEEeccccc----eeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhh
Q 010332 307 NLERFHIIDHALVS----YMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDL 382 (513)
Q Consensus 307 ~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~ 382 (513)
+|++|.++++.... ..+..+++|+.++++.... . .+...+. ++++.|+++.+.+..
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l-------------~--~ip~~~~--~~L~~L~Ls~N~l~~--- 288 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-------------K--QVPKGLP--AKLSVLDLSYNRLDR--- 288 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-------------S--SCCSSCC--SEEEEEECCSSCCCS---
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc-------------C--hhhhhcc--CCceEEECCCCCCCC---
Confidence 89999888875433 2234467888877743221 0 0101111 689999999988776
Q ss_pred hccCCCCCcCcccEEEEEec
Q 010332 383 AYEDFFPTFPNLTYLEVHIG 402 (513)
Q Consensus 383 ~~~~~~p~~~~Lk~L~l~~~ 402 (513)
+ +. +..+++|++|++...
T Consensus 289 ~-p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 289 N-PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp C-CC-TTTSCEEEEEECTTC
T ss_pred C-hh-HhhCCCCCEEeccCC
Confidence 3 22 456778888877543
No 103
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.79 E-value=4.3e-06 Score=78.83 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=32.3
Q ss_pred cCCCChHHHHHHhcCCchhhhhhhhhhhhhhHHh
Q 010332 29 ISRLPDPILCHILSFLPAKHAVATRILSSRWNLV 62 (513)
Q Consensus 29 is~LPd~iL~~Ils~Lp~kda~rts~lSrRWr~l 62 (513)
|++||+||+.+|||||+.+|+++.+.|||+||.+
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999953
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.78 E-value=3.6e-06 Score=74.00 Aligned_cols=80 Identities=19% Similarity=0.097 Sum_probs=57.3
Q ss_pred CCcccEEEEeeeecc--ccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCC-ceeEEEecCcc
Q 010332 204 STTLEVLVLYSDFVI--NIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADV-VTNFNISSPTL 280 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~--~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~-~~~l~i~~~~L 280 (513)
.++|++|+|.+|.+. .+|.....+++|+.|+|.++.+.+- ..+..++.|+.|++ .+|.. .+ +....-..++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L-s~N~l-~~~~~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLEL-SENRI-FGGLDMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEE-ESCCC-CSCCCHHHHHCTTC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEEC-cCCcC-chHHHHHHhhCCCC
Confidence 367999999999987 5544446899999999999887653 45778999999999 87765 22 22221124567
Q ss_pred ceEEEEee
Q 010332 281 KKLGIRFD 288 (513)
Q Consensus 281 r~L~i~~~ 288 (513)
+.|.+.++
T Consensus 98 ~~L~Ls~N 105 (168)
T 2ell_A 98 THLNLSGN 105 (168)
T ss_dssp CEEECBSS
T ss_pred CEEeccCC
Confidence 77777665
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.76 E-value=2.9e-06 Score=80.68 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=77.5
Q ss_pred CCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceE
Q 010332 204 STTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKL 283 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L 283 (513)
...++.|.|+++.+.++ +....+++|+.|+|.++.+.+ +. -+..++.|++|.| .++.. .++.. --..++|+.|
T Consensus 18 l~~l~~l~l~~~~i~~~-~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L-~~N~i-~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHL-SHNQI-SDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-ECHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEEC-CSSCC-CCCGG-GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCcccc-cchhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEEC-CCCcc-CCChh-hccCCCCCEE
Confidence 45677778888887775 345689999999999998875 22 3778999999999 88765 33333 1124688999
Q ss_pred EEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccce-eeccCCCeeEEEE
Q 010332 284 GIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSY-MVHELHSLTEAFI 334 (513)
Q Consensus 284 ~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l 334 (513)
.+.++ ... ....+ ..++|++|.++++..... .+..+++|+.+++
T Consensus 91 ~L~~N--~l~---~l~~~--~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L 135 (263)
T 1xeu_A 91 SVNRN--RLK---NLNGI--PSACLSRLFLDNNELRDTDSLIHLKNLEILSI 135 (263)
T ss_dssp ECCSS--CCS---CCTTC--CCSSCCEEECCSSCCSBSGGGTTCTTCCEEEC
T ss_pred ECCCC--ccC---CcCcc--ccCcccEEEccCCccCCChhhcCcccccEEEC
Confidence 99877 321 11111 118888888888754322 2445555665555
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.73 E-value=2.6e-06 Score=73.28 Aligned_cols=68 Identities=21% Similarity=0.094 Sum_probs=53.0
Q ss_pred ccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeec
Q 010332 196 ELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVN 266 (513)
Q Consensus 196 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~ 266 (513)
.+|..+..+++|+.|+|++|.+..+ .....+++|+.|+|+++.+.+. +...+..++.|++|++ .++..
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l-s~N~i 100 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL-SGNKI 100 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC-TTSCC
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC-CCCcC
Confidence 5677666788899999999888775 4556788999999998888652 5666778899999999 77654
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.69 E-value=2.1e-05 Score=81.04 Aligned_cols=179 Identities=12% Similarity=0.093 Sum_probs=91.4
Q ss_pred CcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCcc
Q 010332 201 LCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTL 280 (513)
Q Consensus 201 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~L 280 (513)
+..+++|+.|++++|.+..+|. ..++|+.|+|+++.+.. +.. +..++.|++|++ .++.. .++.. ..++|
T Consensus 191 ~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l-~~N~l-~~l~~---~~~~L 259 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKKLPD---LPLSLESIVAGNNILEE--LPE-LQNLPFLTTIYA-DNNLL-KTLPD---LPPSL 259 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEEC-CSSCC-SSCCS---CCTTC
T ss_pred ccCCCCCCEEECCCCcCCcCCC---CcCcccEEECcCCcCCc--ccc-cCCCCCCCEEEC-CCCcC-Ccccc---ccccc
Confidence 3445555555555555544321 12456666666555542 111 456666677766 55543 22211 12566
Q ss_pred ceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHH
Q 010332 281 KKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLEL 360 (513)
Q Consensus 281 r~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (513)
+.|.+.++ .. ..+....++|++|.++++....+. .-.++|+.+++.... ...
T Consensus 260 ~~L~l~~N--~l------~~l~~~~~~L~~L~ls~N~l~~l~-~~~~~L~~L~l~~N~-------------l~~------ 311 (454)
T 1jl5_A 260 EALNVRDN--YL------TDLPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNE-------------IRS------ 311 (454)
T ss_dssp CEEECCSS--CC------SCCCCCCTTCCEEECCSSCCSEES-CCCTTCCEEECCSSC-------------CSE------
T ss_pred CEEECCCC--cc------cccCcccCcCCEEECcCCccCccc-CcCCcCCEEECcCCc-------------CCc------
Confidence 66666655 21 111112366777777665433211 112456655553221 000
Q ss_pred ccCC-CcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEecccC
Q 010332 361 LEGV-NEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVR 430 (513)
Q Consensus 361 l~~l-~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~ 430 (513)
+..+ ++++.|+++.+.+.. +.. .+++|+.|++..+... .+.. .+++|+.|++..+...
T Consensus 312 i~~~~~~L~~L~Ls~N~l~~---lp~----~~~~L~~L~L~~N~l~--~lp~---~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 312 LCDLPPSLEELNVSNNKLIE---LPA----LPPRLERLIASFNHLA--EVPE---LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp ECCCCTTCCEEECCSSCCSC---CCC----CCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCS
T ss_pred ccCCcCcCCEEECCCCcccc---ccc----cCCcCCEEECCCCccc--cccc---hhhhccEEECCCCCCC
Confidence 1122 478888887765443 111 3578888888766421 1222 4688999999876543
No 108
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.68 E-value=5.6e-05 Score=80.75 Aligned_cols=68 Identities=19% Similarity=0.084 Sum_probs=37.3
Q ss_pred ccCC-CCcCCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 196 ELPE-SLCTSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 196 ~lp~-~l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
.+|. .+..+++|++|+|++|.+..+++.+ .++++|++|+|+++.+..- -...+.+++.|++|.| .++.
T Consensus 66 ~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~L-s~N~ 135 (635)
T 4g8a_A 66 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVA-VETN 135 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEEC-TTSC
T ss_pred CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEEC-CCCc
Confidence 4443 3334566666666666666554433 3566666666666655431 1123556666666666 5553
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.66 E-value=1.7e-05 Score=83.70 Aligned_cols=177 Identities=14% Similarity=0.093 Sum_probs=111.4
Q ss_pred CcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEE
Q 010332 205 TTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLG 284 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~ 284 (513)
.+|+.|+|.++.+..+|+.. +++|+.|+|+++.+.. +. ..++.|+.|+| .++.. .++.. + ..+|+.|.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~L-s~N~l-~~ip~--l-~~~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS--LP---ELPASLEYLDA-CDNRL-STLPE--L-PASLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSC--CC---CCCTTCCEEEC-CSSCC-SCCCC--C-CTTCCEEE
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcc--cc---cccCCCCEEEc-cCCCC-CCcch--h-hcCCCEEE
Confidence 47888999888887764322 5889999998887764 22 45788999999 77765 44443 2 23888888
Q ss_pred EEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCC
Q 010332 285 IRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGV 364 (513)
Q Consensus 285 i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 364 (513)
+.++ ... .... ..++|++|.++++....+.. .+++|+.++++.... .. +.. +.
T Consensus 127 Ls~N--~l~---~lp~---~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L-------------~~--lp~-l~-- 179 (571)
T 3cvr_A 127 VDNN--QLT---MLPE---LPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQL-------------TF--LPE-LP-- 179 (571)
T ss_dssp CCSS--CCS---CCCC---CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCC-------------SC--CCC-CC--
T ss_pred CCCC--cCC---CCCC---cCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCC-------------CC--cch-hh--
Confidence 8876 321 1111 56889999888876544333 567788877754331 00 111 22
Q ss_pred CcceEEEEEcchhhhhhhhccCCCCCcCcc-------cEEEEEeccCCHHHHHHHHhcCCCcceEEEEeccc
Q 010332 365 NEIKFMSLSAETMFALDLAYEDFFPTFPNL-------TYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 365 ~~l~~L~l~~~~~~~~~~~~~~~~p~~~~L-------k~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
++++.|.|+.+.+.. +.. ++. +| +.|++..+... .++.-+..+|+|+.|.|..+..
T Consensus 180 ~~L~~L~Ls~N~L~~---lp~--~~~--~L~~~~~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 180 ESLEALDVSTNLLES---LPA--VPV--RNHHSEETEIFFRCRENRIT--HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp TTCCEEECCSSCCSS---CCC--CC----------CCEEEECCSSCCC--CCCGGGGGSCTTEEEECCSSSC
T ss_pred CCCCEEECcCCCCCc---hhh--HHH--hhhcccccceEEecCCCcce--ecCHHHhcCCCCCEEEeeCCcC
Confidence 788888888876664 332 322 56 77877665322 2333344588899888887653
No 110
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=3.5e-06 Score=74.27 Aligned_cols=87 Identities=7% Similarity=0.013 Sum_probs=63.8
Q ss_pred ccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeec--cCCceeEEEe---cCccceEEEEeecCCCCCCCCcce
Q 010332 226 CFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVN--ADVVTNFNIS---SPTLKKLGIRFDIGDQGSSYNEHK 300 (513)
Q Consensus 226 ~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~--~~~~~~l~i~---~~~Lr~L~i~~~~~~~~~~~~~~~ 300 (513)
.-..|+.|+|+++.+++.++..+ ++|+.|++|.| .+|.. +.++..+.-. +++|+.|++++| ...++.+...
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L-~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C--~~ITD~Gl~~ 134 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRL-CKCHYIEDGCLERLSQLENLQKSMLEMEIISC--GNVTDKGIIA 134 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEE-ESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC--TTCCHHHHHH
T ss_pred CCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEe-CCCCccCHHHHHHHHhcccccCCCCEEEcCCC--CcCCHHHHHH
Confidence 34579999999999999888765 89999999999 99963 2233333321 357999999988 4444444444
Q ss_pred EEEeCCceeEEEEEecc
Q 010332 301 ILIRAPNLERFHIIDHA 317 (513)
Q Consensus 301 i~i~ap~L~~L~l~~~~ 317 (513)
+. .+|+|++|.++++.
T Consensus 135 L~-~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LH-HFRNLKYLFLSDLP 150 (176)
T ss_dssp GG-GCTTCCEEEEESCT
T ss_pred Hh-cCCCCCEEECCCCC
Confidence 43 57889999988875
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.62 E-value=1.5e-05 Score=73.59 Aligned_cols=154 Identities=14% Similarity=0.184 Sum_probs=94.2
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCcee
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTN 272 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~ 272 (513)
...+|..+. ++|+.|+|.++.+..+++. ...+++|+.|+|+++.+.. .....+.+++.|+.|+| .++.. ..
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~L-s~N~l-~~--- 94 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVL-YGNKI-TE--- 94 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE-ECTTTTTTCSSCCEEEC-CSSCC-CC---
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC-cCHHHhhCCcCCCEEEC-CCCcC-Cc---
Confidence 445666543 6789999999988877553 4578899999999887764 11233677888999998 66543 11
Q ss_pred EEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCeeEEEEEEEeecCCCCCccCCCCc
Q 010332 273 FNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLP 352 (513)
Q Consensus 273 l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~ 352 (513)
+. ..+.-..++|++|.++++......
T Consensus 95 l~------------------------~~~f~~l~~L~~L~L~~N~l~~~~------------------------------ 120 (220)
T 2v9t_B 95 LP------------------------KSLFEGLFSLQLLLLNANKINCLR------------------------------ 120 (220)
T ss_dssp CC------------------------TTTTTTCTTCCEEECCSSCCCCCC------------------------------
T ss_pred cC------------------------HhHccCCCCCCEEECCCCCCCEeC------------------------------
Confidence 00 000012356666666655321110
Q ss_pred hhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEecc----CCHHHHHHHHhcCC
Q 010332 353 QAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGG----TSWKLLLAILNSLP 417 (513)
Q Consensus 353 ~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~----~~~~~l~~lL~~~P 417 (513)
...+..+++++.|.|+.+.+.. +.+..+..+++|++|++..+. ....++...++.-+
T Consensus 121 -----~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~ 181 (220)
T 2v9t_B 121 -----VDAFQDLHNLNLLSLYDNKLQT---IAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNP 181 (220)
T ss_dssp -----TTTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCC
T ss_pred -----HHHcCCCCCCCEEECCCCcCCE---ECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCC
Confidence 0123456778888887776665 444445567788888886642 35567777666544
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.61 E-value=2.7e-06 Score=73.15 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=58.6
Q ss_pred CCcccEEEEeeeecc--ccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCC-ceeEEEecCcc
Q 010332 204 STTLEVLVLYSDFVI--NIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADV-VTNFNISSPTL 280 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~--~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~-~~~l~i~~~~L 280 (513)
.++|+.|++++|.+. .++.....+++|+.|+|.++.+.+- ..+..++.|+.|++ .+|.. .+ +....-..++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L-s~n~i-~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLEL-SDNRV-SGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEEC-CSSCC-CSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEEC-CCCcc-cchHHHHhhhCCCC
Confidence 367999999999987 5544446899999999999988653 45788999999999 88765 22 22222224667
Q ss_pred ceEEEEee
Q 010332 281 KKLGIRFD 288 (513)
Q Consensus 281 r~L~i~~~ 288 (513)
+.|.+.++
T Consensus 91 ~~L~ls~N 98 (149)
T 2je0_A 91 THLNLSGN 98 (149)
T ss_dssp CEEECTTS
T ss_pred CEEECCCC
Confidence 77777665
No 113
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.56 E-value=7e-06 Score=87.83 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=68.0
Q ss_pred HccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHH-HHHHhcCCCcceEEEEecccCCCCCcccc
Q 010332 360 LLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLL-LAILNSLPNLEVLLIHSHAVRDSGFIFEE 438 (513)
Q Consensus 360 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l-~~lL~~~P~Le~L~i~~~~~~~~~~~w~~ 438 (513)
.+..+++++.|+|+.+.+.. +.+..+..+++|++|+|..+.. ..+ ...+..+++|+.|+|...........+-
T Consensus 489 ~~~~l~~L~~L~Ls~N~L~~---l~~~~f~~l~~L~~L~Ls~N~l--~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l- 562 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQLEQ---LSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL- 562 (635)
T ss_dssp CCTTCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCC--CBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT-
T ss_pred hhhhccccCEEECCCCccCC---cChHHHcCCCCCCEEECCCCcC--CCCChhHHhCCCCCCEEECCCCcCCCCCHHHH-
Confidence 45677888888888877665 5555566788888888865432 111 1235678889999888765432111111
Q ss_pred CccccccccccEEEEE--EecCcHHHHHHHHHHHhcc
Q 010332 439 PVPRCLLFHVKKIEMR--SFGGYEHEFQLVKYFLKNI 473 (513)
Q Consensus 439 ~~~~c~~~~Lk~v~i~--~f~g~~~e~~l~~~lL~~a 473 (513)
.-...+|+.+.+. .|.++..-..|+.++-++.
T Consensus 563 ---~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~ 596 (635)
T 4g8a_A 563 ---QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 596 (635)
T ss_dssp ---TCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTT
T ss_pred ---HhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCC
Confidence 1123679999886 6778877677888876544
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.55 E-value=1.3e-05 Score=73.01 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=93.8
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCcee
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTN 272 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~ 272 (513)
...+|..+ .++|++|+|.++.+..+++.. ..+++|++|+|.++.+.. .....+..++.|++|+| .++.. ..+..
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L-s~n~l-~~~~~ 93 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNL-STNQL-QSLPN 93 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEEC-CSSCC-CCCCT
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEEC-CCCcC-CccCH
Confidence 34555544 358899999999888775543 478999999999887764 22234677899999999 76543 11000
Q ss_pred EEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCeeEEEEEEEeecCCCCCccCCCCc
Q 010332 273 FNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLP 352 (513)
Q Consensus 273 l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~ 352 (513)
...-..++|++|.++++......
T Consensus 94 ---------------------------~~~~~l~~L~~L~L~~N~l~~~~------------------------------ 116 (208)
T 2o6s_A 94 ---------------------------GVFDKLTQLKELALNTNQLQSLP------------------------------ 116 (208)
T ss_dssp ---------------------------TTTTTCTTCCEEECCSSCCCCCC------------------------------
T ss_pred ---------------------------hHhcCccCCCEEEcCCCcCcccC------------------------------
Confidence 00012355666666554321100
Q ss_pred hhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcceEEEEeccc
Q 010332 353 QAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAV 429 (513)
Q Consensus 353 ~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~ 429 (513)
...+..+++++.|.++.+.+.. +.+..+..+++|++|++..+.. ...||+|+.|.+.....
T Consensus 117 -----~~~~~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 117 -----DGVFDKLTQLKDLRLYQNQLKS---VPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEWINKH 177 (208)
T ss_dssp -----TTTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHHHHHHC
T ss_pred -----HhHhccCCcCCEEECCCCccce---eCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHHHHHhC
Confidence 0123455677777777765544 3333345677788887766532 13567777777766543
No 115
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.52 E-value=4.8e-06 Score=83.43 Aligned_cols=75 Identities=20% Similarity=0.177 Sum_probs=50.4
Q ss_pred HHHHHccCCCcceEEEEEcchhhhhhhh-ccCCCCCcCcccEEEEEeccCCH---HHHHHHHhcCCCcceEEEEecccC
Q 010332 356 RVLELLEGVNEIKFMSLSAETMFALDLA-YEDFFPTFPNLTYLEVHIGGTSW---KLLLAILNSLPNLEVLLIHSHAVR 430 (513)
Q Consensus 356 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~-~~~~~p~~~~Lk~L~l~~~~~~~---~~l~~lL~~~P~Le~L~i~~~~~~ 430 (513)
.+...+...+++++|+|+.+.+...... ....+...++|++|+|..+.... ..+...++.+|+|++|+|..+...
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 4555667778888888888765541100 11124455689999998876543 366777888999999999887643
No 116
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.50 E-value=3.5e-05 Score=74.93 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=38.6
Q ss_pred CCcCCCcccEEEEeeeeccc---cCCC--ccccCCcceEEeeeEEeCc--chHHHHhhcCCccceeEeeeeeec
Q 010332 200 SLCTSTTLEVLVLYSDFVIN---IPPS--GLCFPCLKFLHIEMYCLPN--NLTERLFSACPVLEELSIVGLLVN 266 (513)
Q Consensus 200 ~l~~~~~L~~L~L~~~~l~~---~~~~--~~~~~~Lk~L~L~~~~~~~--~~l~~lls~cp~Le~L~L~~~c~~ 266 (513)
.+..+++|++|+|++|.+.. +++. ...+++|++|+|+++.+.. .....++.+++.|++|+| .++..
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~L-s~N~l 236 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL-SHNSL 236 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEEC-TTSCC
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEEC-CCCCC
Confidence 33456777777777776432 1111 1356777777777776653 222334567777777777 66543
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.49 E-value=3.7e-06 Score=76.20 Aligned_cols=83 Identities=20% Similarity=0.141 Sum_probs=51.6
Q ss_pred CCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCc
Q 010332 200 SLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPT 279 (513)
Q Consensus 200 ~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~ 279 (513)
.+..+++|++|+|+++.+..++ ....+++|+.|+|.++.+.. +...+..+|.|+.|++ .++.. .++.. ....++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L-~~N~l-~~l~~-~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWI-SYNQI-ASLSG-IEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEE-EEEEC-CCHHH-HHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEEC-cCCcC-CcCCc-cccCCC
Confidence 4555677788888777777753 45567778888887777763 3344556677788887 66654 33221 011245
Q ss_pred cceEEEEee
Q 010332 280 LKKLGIRFD 288 (513)
Q Consensus 280 Lr~L~i~~~ 288 (513)
|+.|.+.++
T Consensus 117 L~~L~l~~N 125 (198)
T 1ds9_A 117 LRVLYMSNN 125 (198)
T ss_dssp SSEEEESEE
T ss_pred CCEEECCCC
Confidence 666666655
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.48 E-value=4.6e-05 Score=78.39 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=44.1
Q ss_pred CcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEE
Q 010332 205 TTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLG 284 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~ 284 (513)
.+|+.|+|++|.+..+| ....+++|+.|+|+++.+.+ +. ...+.|+.|++ .+|.. .++.. ..++|+.|.
T Consensus 215 ~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--l~---~~~~~L~~L~l-~~N~l-~~l~~---~~~~L~~L~ 283 (454)
T 1jl5_A 215 LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT--LP---DLPPSLEALNV-RDNYL-TDLPE---LPQSLTFLD 283 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--CC---SCCTTCCEEEC-CSSCC-SCCCC---CCTTCCEEE
T ss_pred CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc--cc---ccccccCEEEC-CCCcc-cccCc---ccCcCCEEE
Confidence 46777777777776653 45567777777777766654 11 12467777777 66644 22221 125677777
Q ss_pred EEee
Q 010332 285 IRFD 288 (513)
Q Consensus 285 i~~~ 288 (513)
+.++
T Consensus 284 ls~N 287 (454)
T 1jl5_A 284 VSEN 287 (454)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 6655
No 119
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.47 E-value=1.4e-05 Score=79.22 Aligned_cols=214 Identities=17% Similarity=0.094 Sum_probs=109.2
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCCCCc-CCCcccEEEEeeeeccc-cCCCc-cccCCcceEEee-eEEeCcc
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPESLC-TSTTLEVLVLYSDFVIN-IPPSG-LCFPCLKFLHIE-MYCLPNN 243 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~-~~~~~-~~~~~Lk~L~L~-~~~~~~~ 243 (513)
.++++|++. +.. -..+|...| .+++|++|+|+++.+.. +++.+ .++++|+.+.+. +..+..
T Consensus 30 ~~l~~L~Ls----------~N~----i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~- 94 (350)
T 4ay9_X 30 RNAIELRFV----------LTK----LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY- 94 (350)
T ss_dssp TTCSEEEEE----------SCC----CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-
T ss_pred CCCCEEEcc----------CCc----CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-
Confidence 467777776 110 346666544 46788888888887543 32322 356666554333 322322
Q ss_pred hHHHHhhcCCccceeEeeeeeeccCCcee-EEEecCccceEEEEeecCCCCCCCCcceEEE-----eCCceeEEEEEecc
Q 010332 244 LTERLFSACPVLEELSIVGLLVNADVVTN-FNISSPTLKKLGIRFDIGDQGSSYNEHKILI-----RAPNLERFHIIDHA 317 (513)
Q Consensus 244 ~l~~lls~cp~Le~L~L~~~c~~~~~~~~-l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i-----~ap~L~~L~l~~~~ 317 (513)
-....+..++.|+.|.+ .++.. ..+.. ......++..|.+.++ .....+.. ...+|+.|.+.++.
T Consensus 95 l~~~~f~~l~~L~~L~l-~~n~l-~~~~~~~~~~~~~l~~l~l~~~-------~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLI-SNTGI-KHLPDVHKIHSLQKVLLDIQDN-------INIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp ECTTSBCCCTTCCEEEE-EEECC-SSCCCCTTCCBSSCEEEEEESC-------TTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cCchhhhhccccccccc-ccccc-ccCCchhhcccchhhhhhhccc-------cccccccccchhhcchhhhhhcccccc
Confidence 11223567788888888 77654 22221 1123345566666544 11112211 12457777777765
Q ss_pred ccceeec--cCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCccc
Q 010332 318 LVSYMVH--ELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLT 395 (513)
Q Consensus 318 ~~~~~~~--~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk 395 (513)
...+... ...+|+++.+.... .. ...-...+.++++++.|+++.+.+.. +... .|.+|+
T Consensus 166 i~~i~~~~f~~~~L~~l~l~~~n-------~l------~~i~~~~f~~l~~L~~LdLs~N~l~~---lp~~---~~~~L~ 226 (350)
T 4ay9_X 166 IQEIHNSAFNGTQLDELNLSDNN-------NL------EELPNDVFHGASGPVILDISRTRIHS---LPSY---GLENLK 226 (350)
T ss_dssp CCEECTTSSTTEEEEEEECTTCT-------TC------CCCCTTTTTTEECCSEEECTTSCCCC---CCSS---SCTTCC
T ss_pred ccCCChhhccccchhHHhhccCC-------cc------cCCCHHHhccCcccchhhcCCCCcCc---cChh---hhccch
Confidence 4433222 22334444331100 00 00001245678899999999877665 3322 366677
Q ss_pred EEEEEeccCCHHHHHHHHhcCCCcceEEEEe
Q 010332 396 YLEVHIGGTSWKLLLAILNSLPNLEVLLIHS 426 (513)
Q Consensus 396 ~L~l~~~~~~~~~l~~lL~~~P~Le~L~i~~ 426 (513)
+|.+..+.. ...++. +..+++|+.+++..
T Consensus 227 ~L~~l~~~~-l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 227 KLRARSTYN-LKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTT-CCCCCC-TTTCCSCCEEECSC
T ss_pred HhhhccCCC-cCcCCC-chhCcChhhCcCCC
Confidence 766543321 111121 45677888887754
No 120
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.45 E-value=3.5e-05 Score=78.90 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=37.5
Q ss_pred CCCcccCCCChHHHHHHhcCCchhhhhhhhhhhhhhHHhhc
Q 010332 24 DSEDRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWT 64 (513)
Q Consensus 24 ~~~D~is~LPd~iL~~Ils~Lp~kda~rts~lSrRWr~lw~ 64 (513)
-..|.|+.||+||+.+||+|||.++.++++.|||+|+++-.
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 45799999999999999999999999999999999997643
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.44 E-value=1.2e-05 Score=71.31 Aligned_cols=81 Identities=11% Similarity=-0.048 Sum_probs=46.5
Q ss_pred cCCCcccEEEEeeeeccccCCCccc-cCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeE-EEecCc
Q 010332 202 CTSTTLEVLVLYSDFVINIPPSGLC-FPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNF-NISSPT 279 (513)
Q Consensus 202 ~~~~~L~~L~L~~~~l~~~~~~~~~-~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l-~i~~~~ 279 (513)
..+.+|+.|+|+++.+..+ +.... +++|+.|+|+++.+.+ + .-+..++.|+.|.| .++.. ..+..- .-..++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~L-s~N~l-~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLV-NNNRI-CRIGEGLDQALPD 89 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEEC-CSSCC-CEECSCHHHHCTT
T ss_pred CCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEEC-CCCcc-cccCcchhhcCCC
Confidence 3466777777777777665 33333 3477777777776654 1 23566777777777 66543 111100 012355
Q ss_pred cceEEEEee
Q 010332 280 LKKLGIRFD 288 (513)
Q Consensus 280 Lr~L~i~~~ 288 (513)
|+.|.+.++
T Consensus 90 L~~L~L~~N 98 (176)
T 1a9n_A 90 LTELILTNN 98 (176)
T ss_dssp CCEEECCSC
T ss_pred CCEEECCCC
Confidence 666666554
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.39 E-value=2.3e-05 Score=70.87 Aligned_cols=39 Identities=18% Similarity=0.102 Sum_probs=29.3
Q ss_pred ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeec
Q 010332 224 GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVN 266 (513)
Q Consensus 224 ~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~ 266 (513)
...+++|+.|+|+++.+.+ +. .+.+++.|+.|++ .+|..
T Consensus 44 ~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l-~~n~l 82 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSL-GRNLI 82 (198)
T ss_dssp HHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEE-EEEEE
T ss_pred HhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEEC-CCCCc
Confidence 3468888999998888876 22 4667888888888 77754
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.37 E-value=4.3e-05 Score=70.86 Aligned_cols=90 Identities=20% Similarity=0.184 Sum_probs=53.7
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCcee
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTN 272 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~ 272 (513)
...+|..+. ++|+.|+|+++.+..+++. ...+++|+.|+|.++.+.. .-...+.+++.|+.|+| .++.. ..+..
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~L-s~N~l-~~l~~ 105 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDL-GTNQL-TVLPS 105 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC-CSSCC-CCCCT
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEEC-CCCcC-CccCh
Confidence 345555442 6788888888887776443 3467888888888877754 11234567888888888 66543 21111
Q ss_pred EEE-ecCccceEEEEee
Q 010332 273 FNI-SSPTLKKLGIRFD 288 (513)
Q Consensus 273 l~i-~~~~Lr~L~i~~~ 288 (513)
-.+ ..++|+.|.+.++
T Consensus 106 ~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCN 122 (229)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred hHhCcchhhCeEeccCC
Confidence 101 1245666666554
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.26 E-value=6.8e-05 Score=69.46 Aligned_cols=104 Identities=17% Similarity=0.075 Sum_probs=71.5
Q ss_pred CCceEEEEEeecCCccceeeccCCCccccc-CCCCcCCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCcchH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVEL-PESLCTSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPNNLT 245 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~~~l 245 (513)
.+++.|++. +.. ...+ |..+..+++|++|+|.++.+..+++.. .++++|+.|+|+++.+.. ..
T Consensus 40 ~~L~~L~Ls----------~n~----i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~ 104 (229)
T 3e6j_A 40 TNAQILYLH----------DNQ----ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LP 104 (229)
T ss_dssp TTCSEEECC----------SSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC
T ss_pred CCCCEEEcC----------CCc----cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cC
Confidence 678888886 211 2233 445556899999999999998876554 579999999999998875 22
Q ss_pred HHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEee
Q 010332 246 ERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFD 288 (513)
Q Consensus 246 ~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~~ 288 (513)
...+..++.|++|.| .++.. ..+.......++|+.|.+.++
T Consensus 105 ~~~~~~l~~L~~L~L-s~N~l-~~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 105 SAVFDRLVHLKELFM-CCNKL-TELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp TTTTTTCTTCCEEEC-CSSCC-CSCCTTGGGCTTCSEEECCSS
T ss_pred hhHhCcchhhCeEec-cCCcc-cccCcccccCCCCCEEECCCC
Confidence 234678999999999 77654 222111112356777777665
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.21 E-value=7.5e-05 Score=68.73 Aligned_cols=151 Identities=14% Similarity=0.157 Sum_probs=84.6
Q ss_pred cccCCCCcCCCcccEEEEeeeeccccCCC--ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCcee
Q 010332 195 VELPESLCTSTTLEVLVLYSDFVINIPPS--GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTN 272 (513)
Q Consensus 195 ~~lp~~l~~~~~L~~L~L~~~~l~~~~~~--~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~ 272 (513)
..+|..+ ...++.|+|+++.+..+++. ...+++|+.|+|.++.+..- ....+.+++.|++|.| .++.. .++..
T Consensus 24 ~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~L-s~N~l-~~~~~ 98 (220)
T 2v70_A 24 NKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILL-TSNRL-ENVQH 98 (220)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEEC-CSSCC-CCCCG
T ss_pred ccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEEC-CCCcc-CccCH
Confidence 3455544 23467888888887766432 34678888888887776541 1123567788888888 65532 11100
Q ss_pred EEEecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCeeEEEEEEEeecCCCCCccCCCCc
Q 010332 273 FNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLP 352 (513)
Q Consensus 273 l~i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~ 352 (513)
...-..++|++|.++++......
T Consensus 99 ---------------------------~~~~~l~~L~~L~Ls~N~l~~~~------------------------------ 121 (220)
T 2v70_A 99 ---------------------------KMFKGLESLKTLMLRSNRITCVG------------------------------ 121 (220)
T ss_dssp ---------------------------GGGTTCSSCCEEECTTSCCCCBC------------------------------
T ss_pred ---------------------------hHhcCCcCCCEEECCCCcCCeEC------------------------------
Confidence 00012355666665554321110
Q ss_pred hhhHHHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEecc----CCHHHHHHHHhc
Q 010332 353 QAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGG----TSWKLLLAILNS 415 (513)
Q Consensus 353 ~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~----~~~~~l~~lL~~ 415 (513)
...+..+++++.|.|+.+.+.. +.+..+..+++|+.|++..+. ....++...++.
T Consensus 122 -----~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~ 180 (220)
T 2v70_A 122 -----NDSFIGLSSVRLLSLYDNQITT---VAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRK 180 (220)
T ss_dssp -----TTSSTTCTTCSEEECTTSCCCC---BCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHH
T ss_pred -----HhHcCCCccCCEEECCCCcCCE---ECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHh
Confidence 0123356777777777766655 444455567778888876643 244566665553
No 126
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.20 E-value=6.9e-05 Score=74.22 Aligned_cols=113 Identities=19% Similarity=0.136 Sum_probs=70.6
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCcee
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTN 272 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~ 272 (513)
...+|..+ .+++++|+|.++.+..+++.+ .++++|++|+|+++.+.+.--...+.+++.|+++.+ ..+ ..+..
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~-~~~---N~l~~ 94 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI-EKA---NNLLY 94 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE-EEE---TTCCE
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc-ccC---Ccccc
Confidence 45677665 357999999999998886644 689999999999887643111124678888887666 454 23333
Q ss_pred EE----EecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEec
Q 010332 273 FN----ISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDH 316 (513)
Q Consensus 273 l~----i~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~ 316 (513)
+. -..++|+.|.+.++ ... ...........++..|.+.+.
T Consensus 95 l~~~~f~~l~~L~~L~l~~n--~l~--~~~~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNT--GIK--HLPDVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEE--CCS--SCCCCTTCCBSSCEEEEEESC
T ss_pred cCchhhhhcccccccccccc--ccc--cCCchhhcccchhhhhhhccc
Confidence 32 12367888888877 211 011111234556667776654
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.20 E-value=2.1e-05 Score=72.57 Aligned_cols=153 Identities=12% Similarity=0.126 Sum_probs=95.9
Q ss_pred ccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEE
Q 010332 207 LEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIR 286 (513)
Q Consensus 207 L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~ 286 (513)
-+++++.++.+..+|.. -.+.++.|+|+++.+..-.-...+..++.|+.|+| .++.. ..+. .
T Consensus 13 ~~~l~~s~n~l~~iP~~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L-~~N~i----~~i~--~--------- 74 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINF-SNNKI----TDIE--E--------- 74 (220)
T ss_dssp TTEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEEC-CSSCC----CEEC--T---------
T ss_pred CCEeEeCCCCcccCccC--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEEC-CCCcC----CEEC--H---------
Confidence 36899999988876432 24578999999988765222234678999999999 76532 1110 0
Q ss_pred eecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCc
Q 010332 287 FDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNE 366 (513)
Q Consensus 287 ~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 366 (513)
. .+ -..++|++|.++++....+ ....+.++++
T Consensus 75 -~--~~----------~~l~~L~~L~Ls~N~l~~~-----------------------------------~~~~~~~l~~ 106 (220)
T 2v70_A 75 -G--AF----------EGASGVNEILLTSNRLENV-----------------------------------QHKMFKGLES 106 (220)
T ss_dssp -T--TT----------TTCTTCCEEECCSSCCCCC-----------------------------------CGGGGTTCSS
T ss_pred -H--Hh----------CCCCCCCEEECCCCccCcc-----------------------------------CHhHhcCCcC
Confidence 0 00 1235677777666532111 0123456788
Q ss_pred ceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHH-HHHHhcCCCcceEEEEecccC
Q 010332 367 IKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLL-LAILNSLPNLEVLLIHSHAVR 430 (513)
Q Consensus 367 l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l-~~lL~~~P~Le~L~i~~~~~~ 430 (513)
++.|.++.+.+.. +.+..+..+++|++|+|..+.. ..+ ...+..+++|+.|.|...++.
T Consensus 107 L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 107 LKTLMLRSNRITC---VGNDSFIGLSSVRLLSLYDNQI--TTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCEEECTTSCCCC---BCTTSSTTCTTCSEEECTTSCC--CCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCEEECCCCcCCe---ECHhHcCCCccCCEEECCCCcC--CEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999998887765 5555566788888888865422 111 234567788888888776543
No 128
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.18 E-value=0.00021 Score=72.73 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=36.9
Q ss_pred CCCCcccCCCChHHHHHHhcCCchhhhhhhhhhhhhhHHh
Q 010332 23 HDSEDRISRLPDPILCHILSFLPAKHAVATRILSSRWNLV 62 (513)
Q Consensus 23 ~~~~D~is~LPd~iL~~Ils~Lp~kda~rts~lSrRWr~l 62 (513)
....|.|+.||+|++.+||+||+.+|.++++.|||+|+.+
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 4457999999999999999999999999999999999863
No 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.15 E-value=0.0001 Score=66.96 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=69.5
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCCCC-cCCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCcchH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPESL-CTSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPNNLT 245 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~~~l 245 (513)
.+++.|++. +.. ...+|... ..+++|++|+|.++.+..+++.. ..+++|++|+|.++.+.. ..
T Consensus 28 ~~l~~L~l~----------~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~ 92 (208)
T 2o6s_A 28 AQTTYLDLE----------TNS----LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LP 92 (208)
T ss_dssp TTCSEEECC----------SSC----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC
T ss_pred CCCcEEEcC----------CCc----cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cC
Confidence 477888876 110 33555544 45799999999999998876544 579999999999988764 22
Q ss_pred HHHhhcCCccceeEeeeeeeccCCceeEEE-ecCccceEEEEee
Q 010332 246 ERLFSACPVLEELSIVGLLVNADVVTNFNI-SSPTLKKLGIRFD 288 (513)
Q Consensus 246 ~~lls~cp~Le~L~L~~~c~~~~~~~~l~i-~~~~Lr~L~i~~~ 288 (513)
...+..++.|++|++ .++.. .++..-.+ ..++|+.|.+.++
T Consensus 93 ~~~~~~l~~L~~L~L-~~N~l-~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 93 NGVFDKLTQLKELAL-NTNQL-QSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp TTTTTTCTTCCEEEC-CSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred HhHhcCccCCCEEEc-CCCcC-cccCHhHhccCCcCCEEECCCC
Confidence 234678999999999 77654 22111101 1346666666654
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.14 E-value=3e-05 Score=77.23 Aligned_cols=68 Identities=18% Similarity=0.118 Sum_probs=47.5
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCCcc--ccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPSGL--CFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~--~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
...+|..+. ..++.|+|+++.+..+++... .+++|+.|+|.++.+..- ....+.+++.|++|+| .++.
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~L-s~N~ 99 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDL-SSNH 99 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEEC-CSSC
T ss_pred cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEEC-CCCc
Confidence 345665443 457889999988887755443 788999999988877651 1123667889999999 6654
No 131
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.10 E-value=0.00014 Score=73.84 Aligned_cols=39 Identities=36% Similarity=0.512 Sum_probs=36.0
Q ss_pred CCCcccCCCChH----HHHHHhcCCchhhhhhhhhhhhhhHHh
Q 010332 24 DSEDRISRLPDP----ILCHILSFLPAKHAVATRILSSRWNLV 62 (513)
Q Consensus 24 ~~~D~is~LPd~----iL~~Ils~Lp~kda~rts~lSrRWr~l 62 (513)
-..|.|+.||+| |+.+||+||+.++.++++.|||+|+++
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 357999999999 999999999999999999999999943
No 132
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.07 E-value=0.00079 Score=66.82 Aligned_cols=60 Identities=28% Similarity=0.268 Sum_probs=42.6
Q ss_pred CcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHh-hcCCccceeEeeee
Q 010332 201 LCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLF-SACPVLEELSIVGL 263 (513)
Q Consensus 201 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~ll-s~cp~Le~L~L~~~ 263 (513)
+-.++.|++|.|.++.-..+++ ...++|++|+|..+.++...+..+. +.+|.|+.|+| ..
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L-~~ 228 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL-YV 228 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE-EC
T ss_pred HhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE-ec
Confidence 3456889999998773222222 3478899999988888776666654 36899999988 53
No 133
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.88 E-value=0.0002 Score=65.78 Aligned_cols=104 Identities=14% Similarity=0.108 Sum_probs=69.3
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCC-CCcCCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEEeCcchH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPE-SLCTSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYCLPNNLT 245 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~~~~~~l 245 (513)
.++++|++. +.. ...+|. .+..+++|+.|+|+++.+..+.+ ...++++|+.|+|+++.+.. .-
T Consensus 32 ~~l~~L~l~----------~n~----i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~ 96 (220)
T 2v9t_B 32 ETITEIRLE----------QNT----IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LP 96 (220)
T ss_dssp TTCCEEECC----------SSC----CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CC
T ss_pred cCCCEEECC----------CCc----CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cC
Confidence 467888876 110 334554 44457899999999999887644 44679999999999998875 22
Q ss_pred HHHhhcCCccceeEeeeeeeccCCceeEEE-ecCccceEEEEee
Q 010332 246 ERLFSACPVLEELSIVGLLVNADVVTNFNI-SSPTLKKLGIRFD 288 (513)
Q Consensus 246 ~~lls~cp~Le~L~L~~~c~~~~~~~~l~i-~~~~Lr~L~i~~~ 288 (513)
..++.+++.|+.|.| .++.. .++..-.+ ..++|+.|.+.++
T Consensus 97 ~~~f~~l~~L~~L~L-~~N~l-~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLL-NANKI-NCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp TTTTTTCTTCCEEEC-CSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred HhHccCCCCCCEEEC-CCCCC-CEeCHHHcCCCCCCCEEECCCC
Confidence 234678999999999 77654 22111111 1246666666655
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.78 E-value=0.00028 Score=62.24 Aligned_cols=106 Identities=14% Similarity=0.054 Sum_probs=51.6
Q ss_pred cccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeE--EEecCccceE
Q 010332 206 TLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNF--NISSPTLKKL 283 (513)
Q Consensus 206 ~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l--~i~~~~Lr~L 283 (513)
+|+.|+|+++.+..+ +....+++|+.|+|+++.+..- ...++..+|.|+.|+| .++.. ..+..+ -...++|+.|
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L-~~N~i-~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELIL-TNNSL-VELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEEC-CSCCC-CCGGGGGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEEC-CCCcC-CcchhhHhhhcCCCCCEE
Confidence 566666666655554 3334556666666666655431 1123455666666666 55543 222210 0123456666
Q ss_pred EEEeecCCCCCCCCc-ceEEEeCCceeEEEEEecc
Q 010332 284 GIRFDIGDQGSSYNE-HKILIRAPNLERFHIIDHA 317 (513)
Q Consensus 284 ~i~~~~~~~~~~~~~-~~i~i~ap~L~~L~l~~~~ 317 (513)
.+.++ ........ ..+.-..|+|++|.+.++.
T Consensus 119 ~l~~N--~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 119 CILRN--PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSS--GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EecCC--CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 66554 21100000 0012356888888877764
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.77 E-value=0.00023 Score=63.92 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=45.6
Q ss_pred cccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 195 VELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 195 ~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
..+|..++ ++|++|+|.++.+..+|....++++|+.|+|+++.+.. .....+.+++.|++|+| .++.
T Consensus 23 ~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~L-s~N~ 89 (193)
T 2wfh_A 23 KVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLIL-SYNR 89 (193)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC-CSSC
T ss_pred CcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEEEC-CCCc
Confidence 45555443 57888888888887765445578888888888887765 11123567788888888 6654
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.76 E-value=0.00025 Score=63.63 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=51.2
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCC--ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeec
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPS--GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVN 266 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~--~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~ 266 (513)
...+|..++. +|++|+|.++.+..+++. ...+++|++|+|+++.+.+ .....+.+++.|++|+| .++..
T Consensus 20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L-s~N~l 90 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQL-GENKI 90 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEEC-CSCCC
T ss_pred cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC-cCHhHcCCcccCCEEEC-CCCcC
Confidence 3466665543 889999999988877654 4579999999999988865 11234678899999999 77643
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.72 E-value=0.00059 Score=66.76 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=39.0
Q ss_pred HccCCCcceEEEEEcchhhhhhhhccCCCCCcCccc-EEEEEeccCCHHHH-HHHHhcCCCcceEEEEecc
Q 010332 360 LLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLT-YLEVHIGGTSWKLL-LAILNSLPNLEVLLIHSHA 428 (513)
Q Consensus 360 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk-~L~l~~~~~~~~~l-~~lL~~~P~Le~L~i~~~~ 428 (513)
.+.+|.+++.+++... +.. +....+..+.+|+ .|.+...- ..+ ..-+.+|++|++|.+....
T Consensus 245 aF~~~~~L~~l~l~~n-i~~---I~~~aF~~~~~L~~~l~l~~~l---~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LKT---IGQRVFSNCGRLAGTLELPASV---TAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp TTTTCTTCCEEECCTT-CCE---ECTTTTTTCTTCCEEEEECTTC---CEECTTTTTTCTTEEEEEECSSC
T ss_pred hhhCCCCCCEEECCcc-cce---ehHHHhhCChhccEEEEEcccc---eEEchhhhhCCccCCEEEeCCCc
Confidence 4567788888888765 333 4555566777787 77774421 111 1235688999999886543
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.69 E-value=0.00036 Score=69.29 Aligned_cols=120 Identities=23% Similarity=0.199 Sum_probs=77.4
Q ss_pred ccccCCCCc--CCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCc
Q 010332 194 PVELPESLC--TSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVV 270 (513)
Q Consensus 194 ~~~lp~~l~--~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~ 270 (513)
...++...+ .+++|+.|+|+++.+..+++. ..++++|+.|+|+++.+.. .....+.+++.|+.|.| .++.. ..+
T Consensus 51 l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L-~~N~i-~~~ 127 (361)
T 2xot_A 51 LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLL-YNNHI-VVV 127 (361)
T ss_dssp CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEEC-CSSCC-CEE
T ss_pred CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcCCCEEEC-CCCcc-cEE
Confidence 345555554 679999999999999887654 4579999999999988765 12234778999999999 77653 111
Q ss_pred eeEEE-ecCccceEEEEeecCCCCCCCCcceEE--EeCCceeEEEEEecccc
Q 010332 271 TNFNI-SSPTLKKLGIRFDIGDQGSSYNEHKIL--IRAPNLERFHIIDHALV 319 (513)
Q Consensus 271 ~~l~i-~~~~Lr~L~i~~~~~~~~~~~~~~~i~--i~ap~L~~L~l~~~~~~ 319 (513)
..-.+ ..++|+.|.+.++ .... .....+. -..++|++|.++++...
T Consensus 128 ~~~~~~~l~~L~~L~L~~N--~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 128 DRNAFEDMAQLQKLYLSQN--QISR-FPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CTTTTTTCTTCCEEECCSS--CCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred CHHHhCCcccCCEEECCCC--cCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence 11011 1367888888776 2110 0111110 24678888888876543
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.69 E-value=0.00033 Score=61.79 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=55.0
Q ss_pred cccCCCCcCCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeE
Q 010332 195 VELPESLCTSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNF 273 (513)
Q Consensus 195 ~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l 273 (513)
..+|..++ ++|++|+|.++.+..+++.. ..+++|++|+|.++.+.. .....+..++.|+.|+| .++.. .++..-
T Consensus 20 ~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l-~~N~l-~~~~~~ 94 (177)
T 2o6r_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYL-HENKL-QSLPNG 94 (177)
T ss_dssp SSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEEC-CSSCC-CCCCTT
T ss_pred ccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccCEEEC-CCCCc-cccCHH
Confidence 44554443 57888888888887765544 468888888888887764 12233567888888888 76643 211111
Q ss_pred EE-ecCccceEEEEee
Q 010332 274 NI-SSPTLKKLGIRFD 288 (513)
Q Consensus 274 ~i-~~~~Lr~L~i~~~ 288 (513)
.+ ..++|+.|.+.++
T Consensus 95 ~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 95 VFDKLTQLKELALDTN 110 (177)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred HhhCCcccCEEECcCC
Confidence 01 1245666666554
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.69 E-value=0.00035 Score=73.83 Aligned_cols=65 Identities=23% Similarity=0.226 Sum_probs=42.1
Q ss_pred ccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 196 ELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 196 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
.+|. +..+++|+.|+|++|.+..+|.....+++|+.|+|+++.+.+ +. -+..++.|+.|+| .++.
T Consensus 455 ~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L-s~N~ 519 (567)
T 1dce_A 455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL-CNNR 519 (567)
T ss_dssp SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC-CSSC
T ss_pred CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC-CCCC
Confidence 4554 555677777777777776664444567777777777776654 22 3566777777777 6554
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.53 E-value=0.00064 Score=61.02 Aligned_cols=83 Identities=18% Similarity=0.067 Sum_probs=62.8
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTE 246 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~ 246 (513)
.++++|++. ... ...+|..+..+++|+.|+|+++.+..+++. ..++++|++|+|+++.+..- ..
T Consensus 31 ~~l~~L~L~----------~n~----i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i-~~ 95 (193)
T 2wfh_A 31 RDVTELYLD----------GNQ----FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI-PP 95 (193)
T ss_dssp TTCCEEECC----------SSC----CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CT
T ss_pred CCCCEEECC----------CCc----CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe-CH
Confidence 478888876 111 346776667789999999999999887654 45899999999999988751 12
Q ss_pred HHhhcCCccceeEeeeeeec
Q 010332 247 RLFSACPVLEELSIVGLLVN 266 (513)
Q Consensus 247 ~lls~cp~Le~L~L~~~c~~ 266 (513)
..+.+++.|+.|.| .++..
T Consensus 96 ~~f~~l~~L~~L~L-~~N~l 114 (193)
T 2wfh_A 96 RTFDGLKSLRLLSL-HGNDI 114 (193)
T ss_dssp TTTTTCTTCCEEEC-CSSCC
T ss_pred HHhCCCCCCCEEEC-CCCCC
Confidence 24678899999999 76643
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.42 E-value=0.0011 Score=58.43 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=61.7
Q ss_pred CCceEEEEEeecCCccceeeccCCCcccccCCCC-cCCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCcchH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVELPESL-CTSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPNNLT 245 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~~~l 245 (513)
.+++.|++. +.. ...+|... ..+++|++|+|+++.+..+++.. ..+++|+.|+|+++.+.. ..
T Consensus 28 ~~l~~L~l~----------~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~ 92 (177)
T 2o6r_A 28 SSATRLELE----------SNK----LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LP 92 (177)
T ss_dssp TTCSEEECC----------SSC----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC
T ss_pred CCCcEEEeC----------CCc----ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cC
Confidence 478888876 110 33555544 45799999999999998876554 579999999999998875 22
Q ss_pred HHHhhcCCccceeEeeeeeec
Q 010332 246 ERLFSACPVLEELSIVGLLVN 266 (513)
Q Consensus 246 ~~lls~cp~Le~L~L~~~c~~ 266 (513)
...+..++.|+.|++ .++..
T Consensus 93 ~~~~~~l~~L~~L~l-~~N~l 112 (177)
T 2o6r_A 93 NGVFDKLTQLKELAL-DTNQL 112 (177)
T ss_dssp TTTTTTCTTCCEEEC-CSSCC
T ss_pred HHHhhCCcccCEEEC-cCCcc
Confidence 234678999999999 77653
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.41 E-value=0.00065 Score=71.76 Aligned_cols=76 Identities=17% Similarity=0.080 Sum_probs=50.9
Q ss_pred cccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEE-ecCccceEE
Q 010332 206 TLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNI-SSPTLKKLG 284 (513)
Q Consensus 206 ~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i-~~~~Lr~L~ 284 (513)
.|+.|+|+++.+..+| ....+++|+.|+|+++.+.. +..-+.+++.|+.|.| .++.. .++. .+ ..++|+.|.
T Consensus 442 ~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L-s~N~l-~~lp--~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQA-SDNAL-ENVD--GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEEC-CSSCC-CCCG--GGTTCSSCCEEE
T ss_pred CceEEEecCCCCCCCc-CccccccCcEeecCcccccc--cchhhhcCCCCCEEEC-CCCCC-CCCc--ccCCCCCCcEEE
Confidence 4778888888887764 46678888888888887763 3334678888888888 76654 3322 11 124566666
Q ss_pred EEee
Q 010332 285 IRFD 288 (513)
Q Consensus 285 i~~~ 288 (513)
+.++
T Consensus 515 Ls~N 518 (567)
T 1dce_A 515 LCNN 518 (567)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6655
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.35 E-value=0.00029 Score=76.82 Aligned_cols=111 Identities=14% Similarity=-0.049 Sum_probs=61.8
Q ss_pred CCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEec
Q 010332 198 PESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISS 277 (513)
Q Consensus 198 p~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~ 277 (513)
|..+..+..|+.|+|+++.+..+++....+++|+.|+|+++.+.. +..-+..++.|+.|+| .++.+ ..+....-..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L-s~N~l-~~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE--LPAEIKNLSNLRVLDL-SHNRL-TSLPAELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSC--CCGGGGGGTTCCEEEC-TTSCC-SSCCSSGGGG
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcc--cChhhhCCCCCCEEeC-cCCcC-CccChhhcCC
Confidence 344455677788888877777665555677788888887777653 2223567778888888 66644 2211111123
Q ss_pred CccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEecc
Q 010332 278 PTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHA 317 (513)
Q Consensus 278 ~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~ 317 (513)
++|+.|.+.++ ... ......-..++|++|.++++.
T Consensus 293 ~~L~~L~L~~N--~l~---~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 293 FQLKYFYFFDN--MVT---TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TTCSEEECCSS--CCC---CCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCEEECCCC--CCC---ccChhhhcCCCccEEeCCCCc
Confidence 56777777665 211 000011245677777777654
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.28 E-value=0.00035 Score=76.20 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=67.6
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCceeE
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNF 273 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l 273 (513)
...+|..++.+++|++|+|++|.+..+|.....+++|+.|+|+++.+.. +..-+.+++.|++|.| .++.+ ..+...
T Consensus 236 l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L-~~N~l-~~lp~~ 311 (727)
T 4b8c_D 236 IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFYF-FDNMV-TTLPWE 311 (727)
T ss_dssp CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS--CCSSGGGGTTCSEEEC-CSSCC-CCCCSS
T ss_pred CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc--cChhhcCCCCCCEEEC-CCCCC-CccChh
Confidence 4478888888899999999999988775556689999999999998873 3333678899999999 77754 222221
Q ss_pred EEecCccceEEEEee
Q 010332 274 NISSPTLKKLGIRFD 288 (513)
Q Consensus 274 ~i~~~~Lr~L~i~~~ 288 (513)
--..++|+.|.+.++
T Consensus 312 ~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 312 FGNLCNLQFLGVEGN 326 (727)
T ss_dssp TTSCTTCCCEECTTS
T ss_pred hhcCCCccEEeCCCC
Confidence 112367888888776
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.02 E-value=0.0017 Score=57.12 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=48.2
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
...+|..+. ++|+.|+|+++.+..+++. ..++++|+.|+|+++.+.. .-..++.+++.|+.|+| .++.
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L-~~N~ 92 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDL-NDNH 92 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC-CSSC
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEEC-CCCc
Confidence 345666553 7788899988888877554 3578888999888887765 11224567888888888 6654
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.97 E-value=0.0019 Score=56.56 Aligned_cols=68 Identities=24% Similarity=0.272 Sum_probs=48.7
Q ss_pred ccccCCCCcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeee
Q 010332 194 PVELPESLCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~ 265 (513)
...+|..++ ++|+.|+|+++.+..+++. ..++++|+.|+|+++.+.. .....+.+++.|+.|+| .++.
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L-~~N~ 89 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSL-NDNQ 89 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEEC-CSSC
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEEC-CCCc
Confidence 345666553 7788899999888877554 3578889999999888764 12234577888888888 6654
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.94 E-value=0.0028 Score=63.87 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=30.7
Q ss_pred CCCcccEEEEeeeeccccCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEe
Q 010332 203 TSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSI 260 (513)
Q Consensus 203 ~~~~L~~L~L~~~~l~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L 260 (513)
.|.+|+.+.|..+.+..++..+..+.+|+.+.|... +.. --...+.+|+.|+.+.|
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~-I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKE-IGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCE-ECTTTTTTCTTCCCEEC
T ss_pred CcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hhe-ehhhHhhCCCCCCEEec
Confidence 366677776666655555444445566666666422 111 00123566777777777
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.94 E-value=0.0018 Score=63.61 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=59.9
Q ss_pred ccccCCCCcCCCcccEEEEee-eeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeeccCCce
Q 010332 194 PVELPESLCTSTTLEVLVLYS-DFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVT 271 (513)
Q Consensus 194 ~~~lp~~l~~~~~L~~L~L~~-~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~ 271 (513)
...+|. +..+.+|+.|+|++ +.+..+++. ..++++|+.|+|+++.+.. .....+.+++.|+.|+| .+..+ ..+.
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l-~~N~l-~~~~ 96 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNL-SFNAL-ESLS 96 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEEC-CSSCC-SCCC
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeC-CCCcc-ceeC
Confidence 345777 76778889999986 888776544 3478889999998887765 22234678888999998 76544 2222
Q ss_pred eEEEecCccceEEEEee
Q 010332 272 NFNISSPTLKKLGIRFD 288 (513)
Q Consensus 272 ~l~i~~~~Lr~L~i~~~ 288 (513)
.-.+...+|+.|.+.++
T Consensus 97 ~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGN 113 (347)
T ss_dssp STTTCSCCCCEEECCSS
T ss_pred HHHcccCCceEEEeeCC
Confidence 11122223777777665
No 150
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=95.85 E-value=0.0017 Score=58.02 Aligned_cols=81 Identities=12% Similarity=0.035 Sum_probs=59.1
Q ss_pred CceEEEEEeecCCccceeeccCCCcccccCCC--CcCCCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchH
Q 010332 169 NVREIEIYLESHGLHTLFYFFERQDPVELPES--LCTSTTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLT 245 (513)
Q Consensus 169 ~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~--l~~~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l 245 (513)
++++|.+. +.. ...+|.. +...++|++|+|+++.+..+++. ..++++|+.|+|+++.+.+- .
T Consensus 30 ~l~~L~l~----------~n~----i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~ 94 (192)
T 1w8a_A 30 HTTELLLN----------DNE----LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-S 94 (192)
T ss_dssp TCSEEECC----------SCC----CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-C
T ss_pred CCCEEECC----------CCc----CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc-C
Confidence 67778775 110 3344442 45679999999999999887554 45799999999999988761 1
Q ss_pred HHHhhcCCccceeEeeeeee
Q 010332 246 ERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 246 ~~lls~cp~Le~L~L~~~c~ 265 (513)
...+.+++.|+.|+| .++.
T Consensus 95 ~~~~~~l~~L~~L~L-~~N~ 113 (192)
T 1w8a_A 95 NKMFLGLHQLKTLNL-YDNQ 113 (192)
T ss_dssp SSSSTTCTTCCEEEC-CSSC
T ss_pred HHHhcCCCCCCEEEC-CCCc
Confidence 223667899999999 7654
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.53 E-value=0.0078 Score=52.80 Aligned_cols=83 Identities=14% Similarity=0.073 Sum_probs=61.8
Q ss_pred CCceEEEEEeecCCccceeeccCCCccccc-CCCCcCCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCcchH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVEL-PESLCTSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPNNLT 245 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~~~l 245 (513)
.+++.|++. +.. ...+ |..+...++|+.|+|+++.+..+++.. ..+++|+.|+|+++.+.. ..
T Consensus 33 ~~L~~L~Ls----------~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~ 97 (174)
T 2r9u_A 33 TDKQRLWLN----------NNQ----ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IP 97 (174)
T ss_dssp TTCSEEECC----------SSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC
T ss_pred CCCcEEEeC----------CCC----ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eC
Confidence 578888876 111 3344 444556899999999999999886654 579999999999998875 11
Q ss_pred HHHhhcCCccceeEeeeeeec
Q 010332 246 ERLFSACPVLEELSIVGLLVN 266 (513)
Q Consensus 246 ~~lls~cp~Le~L~L~~~c~~ 266 (513)
...+..++.|+.|.| .+..+
T Consensus 98 ~~~~~~l~~L~~L~L-~~N~~ 117 (174)
T 2r9u_A 98 RGAFDNLKSLTHIYL-YNNPW 117 (174)
T ss_dssp TTTTTTCTTCSEEEC-CSSCB
T ss_pred HHHhccccCCCEEEe-CCCCc
Confidence 234678999999999 76543
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.47 E-value=0.0041 Score=60.66 Aligned_cols=193 Identities=15% Similarity=0.099 Sum_probs=100.8
Q ss_pred CCcccEEEEeeeeccccCCC-ccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeec---c-----------C
Q 010332 204 STTLEVLVLYSDFVINIPPS-GLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVN---A-----------D 268 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~~~~~-~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~---~-----------~ 268 (513)
|.+|+.|.|.. .+..++.. ..+|++|+.|+|.+..+.. --...+.+|..|..+.+ ..-.. . .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~-~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPL-GSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECT-TCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchhhhcCCCceEEecC-cchhhhhcccccccccccccc
Confidence 68888888877 55555443 3478888888887664322 00122455766666655 32000 0 0
Q ss_pred Cce-eEEE---------------ecCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccc---eeeccCCCe
Q 010332 269 VVT-NFNI---------------SSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVS---YMVHELHSL 329 (513)
Q Consensus 269 ~~~-~l~i---------------~~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~---~~~~~~p~L 329 (513)
.+. .+.+ ...+++.+.+.+. .. ......+.-.+++|+++.+.++.... ..+.++++|
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~--~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LD--NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CC--HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeee--ec--HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 000 0000 1122333333332 00 00000000137889999988754322 245678888
Q ss_pred eEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcce-EEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHH
Q 010332 330 TEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIK-FMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKL 408 (513)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~ 408 (513)
+++.+.-.. ...-...+.++.+++ .+.+.. .+.. +....+-.+.+|+.|.+.... ...
T Consensus 253 ~~l~l~~ni---------------~~I~~~aF~~~~~L~~~l~l~~-~l~~---I~~~aF~~c~~L~~l~l~~n~--i~~ 311 (329)
T 3sb4_A 253 LKIKLPHNL---------------KTIGQRVFSNCGRLAGTLELPA-SVTA---IEFGAFMGCDNLRYVLATGDK--ITT 311 (329)
T ss_dssp CEEECCTTC---------------CEECTTTTTTCTTCCEEEEECT-TCCE---ECTTTTTTCTTEEEEEECSSC--CCE
T ss_pred CEEECCccc---------------ceehHHHhhCChhccEEEEEcc-cceE---EchhhhhCCccCCEEEeCCCc--cCc
Confidence 888763111 001123467788898 999987 4443 555567778888888874331 111
Q ss_pred H-HHHHhcCCCcceEEE
Q 010332 409 L-LAILNSLPNLEVLLI 424 (513)
Q Consensus 409 l-~~lL~~~P~Le~L~i 424 (513)
+ ...+.+|++|++++.
T Consensus 312 I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTCTTCCCCEEEC
T ss_pred cchhhhcCCcchhhhcc
Confidence 1 113568999998863
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.40 E-value=0.0091 Score=52.09 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=60.9
Q ss_pred CCceEEEEEeecCCccceeeccCCCccccc-CCCCcCCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCcchH
Q 010332 168 RNVREIEIYLESHGLHTLFYFFERQDPVEL-PESLCTSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPNNLT 245 (513)
Q Consensus 168 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~~~l 245 (513)
..++.|++. +.. ...+ |..+...++|+.|+|+++.+..+++.. .++++|+.|+|+++.+.. ..
T Consensus 30 ~~l~~L~L~----------~N~----i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~ 94 (170)
T 3g39_A 30 TTTQVLYLY----------DNQ----ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IP 94 (170)
T ss_dssp TTCSEEECC----------SSC----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC
T ss_pred CCCcEEEcC----------CCc----CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eC
Confidence 577888776 110 3344 444556899999999999999886654 589999999999998875 11
Q ss_pred HHHhhcCCccceeEeeeeee
Q 010332 246 ERLFSACPVLEELSIVGLLV 265 (513)
Q Consensus 246 ~~lls~cp~Le~L~L~~~c~ 265 (513)
...+..++.|+.|.| .+..
T Consensus 95 ~~~~~~l~~L~~L~L-~~N~ 113 (170)
T 3g39_A 95 RGAFDNLKSLTHIWL-LNNP 113 (170)
T ss_dssp TTTTTTCTTCCEEEC-CSSC
T ss_pred HHHhcCCCCCCEEEe-CCCC
Confidence 234678899999999 6653
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.22 E-value=0.013 Score=51.92 Aligned_cols=37 Identities=14% Similarity=-0.005 Sum_probs=21.9
Q ss_pred cCcccEEEE--EeccCC---HHHHHHHHhcCCCcceEEEEec
Q 010332 391 FPNLTYLEV--HIGGTS---WKLLLAILNSLPNLEVLLIHSH 427 (513)
Q Consensus 391 ~~~Lk~L~l--~~~~~~---~~~l~~lL~~~P~Le~L~i~~~ 427 (513)
..+|++|+| ..+... ...+...|+.++.|++|+|..+
T Consensus 120 n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 120 NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 344555555 333322 2356667777888888887654
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=92.68 E-value=0.0078 Score=59.87 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=51.8
Q ss_pred CcccEEEEeeeeccccCCCc------cccCCcceEEeeeEEeCcc---hHHHHhhcCCccceeEeeeeeec-cCCceeEE
Q 010332 205 TTLEVLVLYSDFVINIPPSG------LCFPCLKFLHIEMYCLPNN---LTERLFSACPVLEELSIVGLLVN-ADVVTNFN 274 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~~~------~~~~~Lk~L~L~~~~~~~~---~l~~lls~cp~Le~L~L~~~c~~-~~~~~~l~ 274 (513)
++|++|+|++|.+.+..... ...++|++|+|+++.+++. .+...+..++.|++|+| .+|.. +.+...+.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~L-s~N~l~~~g~~~L~ 204 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL-LHTGLGDEGLELLA 204 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEEC-TTSSCHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeC-CCCCCCcHHHHHHH
Confidence 45666666666554311100 1245666666666666552 23334456666666666 55543 00111100
Q ss_pred ---EecCccceEEEEeecCCCCCCCCcceEE---EeCCceeEEEEEeccc
Q 010332 275 ---ISSPTLKKLGIRFDIGDQGSSYNEHKIL---IRAPNLERFHIIDHAL 318 (513)
Q Consensus 275 ---i~~~~Lr~L~i~~~~~~~~~~~~~~~i~---i~ap~L~~L~l~~~~~ 318 (513)
...++|+.|.+.+| ... +.+...+. ...|+|++|.++++..
T Consensus 205 ~~L~~~~~L~~L~Ls~N--~i~-~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYN--GAG-DTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHGGGCSCCCEEECCSS--CCC-HHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHhcCCCcCeEECCCC--CCC-HHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 11245666666655 210 00000110 1347788888777643
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.08 E-value=0.12 Score=51.80 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=7.1
Q ss_pred hhcCCccceeEe
Q 010332 249 FSACPVLEELSI 260 (513)
Q Consensus 249 ls~cp~Le~L~L 260 (513)
+.+|+.|+.+.+
T Consensus 176 F~~c~~L~~l~l 187 (401)
T 4fdw_A 176 FYYCYNLKKADL 187 (401)
T ss_dssp TTTCTTCCEEEC
T ss_pred hhCcccCCeeec
Confidence 455666666666
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=91.90 E-value=0.086 Score=46.49 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=81.9
Q ss_pred hhhHHHHHccCCCcceEEEEEcc-hhhhhhhh-ccCCCCCcCcccEEEEEeccCCH---HHHHHHHhcCCCcceEEEEec
Q 010332 353 QAKRVLELLEGVNEIKFMSLSAE-TMFALDLA-YEDFFPTFPNLTYLEVHIGGTSW---KLLLAILNSLPNLEVLLIHSH 427 (513)
Q Consensus 353 ~~~~~~~~l~~l~~l~~L~l~~~-~~~~~~~~-~~~~~p~~~~Lk~L~l~~~~~~~---~~l~~lL~~~P~Le~L~i~~~ 427 (513)
....+...+...+++++|.|+.+ .+...... ....+...++|++|+|..+.... ..+...|+..++|++|+|..+
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 45567888999999999999886 55431100 11124466789999998876543 467777889999999999887
Q ss_pred ccCCCCCc-cccCccccccccccEEEE--E-EecCcHHHHHHHHHHHhcccCcCcEEEEe
Q 010332 428 AVRDSGFI-FEEPVPRCLLFHVKKIEM--R-SFGGYEHEFQLVKYFLKNIVSLEKLIVKS 483 (513)
Q Consensus 428 ~~~~~~~~-w~~~~~~c~~~~Lk~v~i--~-~f~g~~~e~~l~~~lL~~a~~Le~~~i~~ 483 (513)
...+.+.. ....... ..+|+.+.+ . +.-|......+++. +++.+.|+.+.+..
T Consensus 104 ~i~~~g~~~l~~~L~~--n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 104 FISGSGILALVEALQS--NTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHF 160 (185)
T ss_dssp CCCHHHHHHHHHGGGG--CSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCC
T ss_pred cCCHHHHHHHHHHHHh--CCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccC
Confidence 65432110 0011111 257999999 4 22344444445554 45678899998854
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=88.10 E-value=0.18 Score=47.39 Aligned_cols=63 Identities=14% Similarity=0.060 Sum_probs=36.7
Q ss_pred cCCCCcCCCcccEEEEeeeeccccCCCccccC--CcceEEeeeEEeCc------chHHHHhhcCCccceeEe
Q 010332 197 LPESLCTSTTLEVLVLYSDFVINIPPSGLCFP--CLKFLHIEMYCLPN------NLTERLFSACPVLEELSI 260 (513)
Q Consensus 197 lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~--~Lk~L~L~~~~~~~------~~l~~lls~cp~Le~L~L 260 (513)
+|..+..+++|+.|+|+++.+..+ .....+. +|+.|+|.++.+.+ .....++..+|.|+.|+=
T Consensus 188 l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 188 MSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred chhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 344344567777777777776653 1122233 67777777766653 223456677777776654
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=87.57 E-value=0.15 Score=49.63 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=49.1
Q ss_pred cccCC-CCcCCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeec
Q 010332 195 VELPE-SLCTSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVN 266 (513)
Q Consensus 195 ~~lp~-~l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~ 266 (513)
..+|. .+..+++|+.|+|+++.+..+++.. .++++|+.|+|+++.+.. -...++...+ |+.|.| .+..+
T Consensus 45 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~-L~~l~l-~~N~~ 115 (347)
T 2ifg_A 45 QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLS-LQELVL-SGNPL 115 (347)
T ss_dssp CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTCSCC-CCEEEC-CSSCC
T ss_pred CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcccCC-ceEEEe-eCCCc
Confidence 34553 4556789999999999998876654 579999999999988865 1112233444 999999 76543
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=83.99 E-value=0.23 Score=46.52 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=17.4
Q ss_pred CcccEEEEeeeeccccCC---CccccCCcceEEeeeEEeCc
Q 010332 205 TTLEVLVLYSDFVINIPP---SGLCFPCLKFLHIEMYCLPN 242 (513)
Q Consensus 205 ~~L~~L~L~~~~l~~~~~---~~~~~~~Lk~L~L~~~~~~~ 242 (513)
+.|++|+|+++.+..+++ ....+++|+.|+|+++.+.+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 445555555555444311 11245555555555555443
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=81.07 E-value=0.19 Score=50.08 Aligned_cols=186 Identities=13% Similarity=0.138 Sum_probs=83.8
Q ss_pred cCCCcccEEEEeeeeccccCC-CccccCCcceEEeeeE--EeCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEecC
Q 010332 202 CTSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMY--CLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSP 278 (513)
Q Consensus 202 ~~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~--~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~ 278 (513)
..|.+|+.+.+..... .+.. ...++++|+.+.+... .+.+ ..+.+|+.|+.+.+ ..... .+........
T Consensus 159 ~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~~~~I~~----~~F~~~~~L~~i~~-~~~~~--~i~~~~~~~~ 230 (394)
T 4fs7_A 159 ATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRNLKIIRD----YCFAECILLENMEF-PNSLY--YLGDFALSKT 230 (394)
T ss_dssp TTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTTCCEECT----TTTTTCTTCCBCCC-CTTCC--EECTTTTTTC
T ss_pred cccCCCcEEecCCccc-eeccccccCCCCceEEEcCCCceEeCc----hhhccccccceeec-CCCce--EeehhhcccC
Confidence 4477888887754321 1212 2346777887777532 1221 23667888888777 43211 1111112234
Q ss_pred ccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccc--cceeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhH
Q 010332 279 TLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHAL--VSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKR 356 (513)
Q Consensus 279 ~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~--~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 356 (513)
+|+.+.+...... -.......+.+|+.+.+..... ....+..++.+......... .
T Consensus 231 ~l~~i~ip~~~~~-----i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~-----------------i 288 (394)
T 4fs7_A 231 GVKNIIIPDSFTE-----LGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI-----------------V 288 (394)
T ss_dssp CCCEEEECTTCCE-----ECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE-----------------E
T ss_pred CCceEEECCCcee-----cccccccccccceeEEcCCCcceeeccccccccccceeccCcee-----------------e
Confidence 5666665432000 0000111345566666544321 11123344445444332111 0
Q ss_pred HHHHccCCCcceEEEEEcchhhhhhhhccCCCCCcCcccEEEEEeccCCHHHH-HHHHhcCCCcceEEE
Q 010332 357 VLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLL-LAILNSLPNLEVLLI 424 (513)
Q Consensus 357 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l-~~lL~~~P~Le~L~i 424 (513)
....+..+.+++.+.+... +.. +....+..+.+|+.+.+... ...+ ..-+.+|.+|+++.|
T Consensus 289 ~~~~F~~~~~L~~i~l~~~-i~~---I~~~aF~~c~~L~~i~lp~~---v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLDS-VKF---IGEEAFESCTSLVSIDLPYL---VEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCE---ECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCTTCCEECC
T ss_pred ccccccccccccccccccc-cce---echhhhcCCCCCCEEEeCCc---ccEEhHHhccCCCCCCEEEE
Confidence 0112345667777766442 222 33334445566666665221 1001 112456777777766
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=72.67 E-value=0.5 Score=42.01 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=26.5
Q ss_pred CCcccEEEEeeeeccccCCCc-----cccCCcceEEeeeEEeCcchHHHH---hhcCCccceeEe
Q 010332 204 STTLEVLVLYSDFVINIPPSG-----LCFPCLKFLHIEMYCLPNNLTERL---FSACPVLEELSI 260 (513)
Q Consensus 204 ~~~L~~L~L~~~~l~~~~~~~-----~~~~~Lk~L~L~~~~~~~~~l~~l---ls~cp~Le~L~L 260 (513)
..+|+.|+|.+|.+.+.-..+ ..-+.|++|+|+++.+++.+...+ +..-..|++|.|
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L 133 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKA 133 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEEC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEEC
Confidence 345666666666554310000 123456666666665555333322 333344555555
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=64.77 E-value=5 Score=39.45 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=23.6
Q ss_pred eCCceeEEEEEecc--ccceeeccCCCeeEEEEEEEeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchh
Q 010332 304 RAPNLERFHIIDHA--LVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETM 377 (513)
Q Consensus 304 ~ap~L~~L~l~~~~--~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 377 (513)
.+.+|+++.+.... .....+.++.+|+.+.+.. .......+..+.+++.+++....+
T Consensus 332 ~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~-----------------~~~~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 332 GCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSG-----------------SRSQWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESS-----------------CHHHHHTCBCCCCC----------
T ss_pred CCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECC-----------------ceeehhhhhccCCCCEEEeCCCCE
Confidence 34556666653321 1223455677777765521 112234456677888888776443
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=63.13 E-value=2.5 Score=37.46 Aligned_cols=62 Identities=6% Similarity=0.072 Sum_probs=39.0
Q ss_pred ccCCcceEEeeeEEeCc---chHHHHhhcCCccceeEeeeeeec-cCCceeEEE---ecCccceEEEEee
Q 010332 226 CFPCLKFLHIEMYCLPN---NLTERLFSACPVLEELSIVGLLVN-ADVVTNFNI---SSPTLKKLGIRFD 288 (513)
Q Consensus 226 ~~~~Lk~L~L~~~~~~~---~~l~~lls~cp~Le~L~L~~~c~~-~~~~~~l~i---~~~~Lr~L~i~~~ 288 (513)
.-..|+.|+|.++.+++ ..+..++.....|++|+| ..+.+ +.|...+.- ...+|+.|.+.++
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L-~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV-ESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC-CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec-CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34678888888888876 556667777788888888 66554 122222111 1245888888654
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=57.72 E-value=16 Score=35.71 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=12.4
Q ss_pred HccCCCcceEEEEEcc
Q 010332 360 LLEGVNEIKFMSLSAE 375 (513)
Q Consensus 360 ~l~~l~~l~~L~l~~~ 375 (513)
.+.+|.+|+.+++...
T Consensus 361 aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR 376 (394)
T ss_dssp TBTTCTTCCEEEEEGG
T ss_pred HhhCCCCCCEEEECCC
Confidence 4677888999988754
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=56.98 E-value=4.4 Score=33.05 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=32.3
Q ss_pred ccCCCCcCCCcccEEEEeeeeccccCCCc-cccCCcceEEeeeEEeC
Q 010332 196 ELPESLCTSTTLEVLVLYSDFVINIPPSG-LCFPCLKFLHIEMYCLP 241 (513)
Q Consensus 196 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~Lk~L~L~~~~~~ 241 (513)
.+|..+ -.+|+.|+|+++.+..+++.. ..+++|++|+|.++.+.
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 555433 246899999999998876544 46888999988887663
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=30.47 E-value=18 Score=34.97 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=43.4
Q ss_pred CCCcccEEEEeeeeccccCC-CccccCCcceEEeeeEE---eCcchHHHHhhcCCccceeEeeeeeeccCCceeEEEe--
Q 010332 203 TSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEMYC---LPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNIS-- 276 (513)
Q Consensus 203 ~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~~~---~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~-- 276 (513)
.|.+|+.+.+... +..++. ...+|++|+++.|.... +.+. .+.+|+.|+.+.| .. .+..+.-.
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~l-p~-----~l~~I~~~aF 329 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTL-PT-----ALKTIQVYAF 329 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEEC-CT-----TCCEECTTTT
T ss_pred eeehhcccccccc-ceeccccccccccccccccccccccceehhh----hhcCCCCCCEEEc-Cc-----cccEEHHHHh
Confidence 4778888887543 222222 33578888888886432 3332 3678888988888 42 33333321
Q ss_pred --cCccceEEEE
Q 010332 277 --SPTLKKLGIR 286 (513)
Q Consensus 277 --~~~Lr~L~i~ 286 (513)
+.+|+.+.+-
T Consensus 330 ~~C~~L~~i~ip 341 (379)
T 4h09_A 330 KNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCCCCCC
T ss_pred hCCCCCCEEEEC
Confidence 4567776663
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=29.52 E-value=35 Score=33.20 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=47.4
Q ss_pred cCCCcccEEEEeeeeccccCC-CccccCCcceEEeee-E-EeCcchHHHHhhcCCccceeEeeeeeeccCCceeEE---E
Q 010332 202 CTSTTLEVLVLYSDFVINIPP-SGLCFPCLKFLHIEM-Y-CLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFN---I 275 (513)
Q Consensus 202 ~~~~~L~~L~L~~~~l~~~~~-~~~~~~~Lk~L~L~~-~-~~~~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~---i 275 (513)
..|..|+.+.+... +..++. ...+|.+|+++.|.. + .+.+ ..+.+|..|+++.| .. .+..+. .
T Consensus 285 ~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~C~~L~~i~i-p~-----sv~~I~~~aF 353 (394)
T 4gt6_A 285 MNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEGITQILD----DAFAGCEQLERIAI-PS-----SVTKIPESAF 353 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEEE-CT-----TCCBCCGGGG
T ss_pred ccccccccccCCCc-ccccCceeecCCCCcCEEEeCCcccEehH----hHhhCCCCCCEEEE-Cc-----ccCEEhHhHh
Confidence 44888998888542 222322 334788999998853 2 2332 23778999999998 53 233222 2
Q ss_pred -ecCccceEEEEee
Q 010332 276 -SSPTLKKLGIRFD 288 (513)
Q Consensus 276 -~~~~Lr~L~i~~~ 288 (513)
.+.+|+.+.+.+.
T Consensus 354 ~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 354 SNCTALNNIEYSGS 367 (394)
T ss_dssp TTCTTCCEEEESSC
T ss_pred hCCCCCCEEEECCc
Confidence 2578888888654
Done!