Query 010333
Match_columns 513
No_of_seqs 316 out of 1719
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 23:18:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02825 amino-acid N-acetyltr 100.0 3.4E-91 7.3E-96 752.5 36.3 401 83-492 1-411 (515)
2 TIGR01890 N-Ac-Glu-synth amino 100.0 4E-65 8.7E-70 542.1 33.6 324 83-491 1-325 (429)
3 PRK05279 N-acetylglutamate syn 100.0 3E-61 6.5E-66 513.7 33.9 331 80-491 6-337 (441)
4 COG0548 ArgB Acetylglutamate k 100.0 7.1E-59 1.5E-63 462.8 30.1 260 98-445 1-265 (265)
5 cd04237 AAK_NAGS-ABP AAK_NAGS- 100.0 5.9E-58 1.3E-62 463.0 30.9 279 82-443 1-280 (280)
6 CHL00202 argB acetylglutamate 100.0 1.5E-56 3.2E-61 453.6 33.2 275 79-444 3-283 (284)
7 PLN02512 acetylglutamate kinas 100.0 4.8E-53 1E-57 432.7 33.6 276 80-445 28-309 (309)
8 PRK00942 acetylglutamate kinas 100.0 5.5E-52 1.2E-56 419.2 32.1 276 81-446 5-283 (283)
9 cd04250 AAK_NAGK-C AAK_NAGK-C: 100.0 4.9E-50 1.1E-54 404.4 30.1 269 87-443 2-279 (279)
10 KOG2436 Acetylglutamate kinase 100.0 2E-48 4.3E-53 409.2 20.9 422 47-488 50-477 (520)
11 cd04252 AAK_NAGK-fArgBP AAK_NA 100.0 8E-46 1.7E-50 368.4 27.9 243 103-443 2-248 (248)
12 cd04238 AAK_NAGK-like AAK_NAGK 100.0 1.4E-44 3.1E-49 359.9 27.1 253 102-443 1-256 (256)
13 PRK14058 acetylglutamate/acety 100.0 1.1E-42 2.4E-47 349.4 29.1 250 101-445 1-267 (268)
14 cd04236 AAK_NAGS-Urea AAK_NAGS 100.0 3.6E-43 7.9E-48 353.4 24.8 254 76-443 15-271 (271)
15 PRK04531 acetylglutamate kinas 100.0 5.8E-43 1.3E-47 368.9 26.4 248 75-466 18-271 (398)
16 PRK12352 putative carbamate ki 100.0 9.7E-43 2.1E-47 356.9 26.3 259 100-445 3-315 (316)
17 cd04249 AAK_NAGK-NC AAK_NAGK-N 100.0 1.5E-42 3.3E-47 344.9 26.7 248 102-443 1-252 (252)
18 cd04251 AAK_NAGK-UC AAK_NAGK-U 100.0 3.8E-42 8.2E-47 343.7 27.0 244 102-443 1-257 (257)
19 TIGR00761 argB acetylglutamate 100.0 1.9E-40 4.2E-45 325.4 25.7 200 101-317 1-203 (231)
20 cd04241 AAK_FomA-like AAK_FomA 100.0 3.2E-35 7E-40 291.8 23.4 238 101-443 1-252 (252)
21 PRK12353 putative amino acid k 100.0 1.3E-33 2.9E-38 289.9 25.9 262 98-445 1-314 (314)
22 cd02115 AAK Amino Acid Kinases 100.0 2.6E-33 5.7E-38 275.0 18.6 237 103-443 1-248 (248)
23 PF00696 AA_kinase: Amino acid 100.0 1.3E-30 2.7E-35 255.2 20.5 192 100-317 1-211 (242)
24 PRK12454 carbamate kinase-like 100.0 2.7E-30 5.8E-35 264.0 23.5 258 99-445 2-313 (313)
25 PRK12686 carbamate kinase; Rev 100.0 4.7E-30 1E-34 262.5 23.0 255 99-444 2-311 (312)
26 COG0263 ProB Glutamate 5-kinas 100.0 7.9E-30 1.7E-34 260.8 20.8 238 100-447 7-261 (369)
27 TIGR00746 arcC carbamate kinas 100.0 5E-29 1.1E-33 255.4 25.2 255 100-444 1-309 (310)
28 PRK09411 carbamate kinase; Rev 100.0 6E-28 1.3E-32 244.6 23.1 245 100-444 2-296 (297)
29 PRK13402 gamma-glutamyl kinase 100.0 3.5E-28 7.6E-33 254.5 20.5 238 99-447 5-259 (368)
30 PRK05429 gamma-glutamyl kinase 100.0 1.5E-27 3.3E-32 250.3 23.6 239 99-447 8-263 (372)
31 cd04256 AAK_P5CS_ProBA AAK_P5C 100.0 1.3E-27 2.8E-32 242.6 22.1 246 99-444 8-284 (284)
32 cd04235 AAK_CK AAK_CK: Carbama 100.0 3.6E-27 7.8E-32 241.1 22.7 253 101-444 1-308 (308)
33 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 3E-27 6.5E-32 235.4 21.2 234 101-444 1-251 (251)
34 PRK12314 gamma-glutamyl kinase 99.9 1.5E-26 3.2E-31 232.8 22.3 237 99-446 9-265 (266)
35 PTZ00489 glutamate 5-kinase; P 99.9 2.7E-26 5.8E-31 230.8 24.1 234 99-446 8-260 (264)
36 cd04260 AAK_AKi-DapG-BS AAK_AK 99.9 2.2E-26 4.8E-31 228.4 23.1 189 101-317 1-208 (244)
37 PRK12354 carbamate kinase; Rev 99.9 1.6E-26 3.4E-31 235.9 21.0 252 100-447 1-302 (307)
38 cd04261 AAK_AKii-LysC-BS AAK_A 99.9 6.5E-26 1.4E-30 224.1 23.2 188 101-316 1-202 (239)
39 TIGR01027 proB glutamate 5-kin 99.9 2.6E-26 5.5E-31 240.4 21.0 238 100-446 1-254 (363)
40 cd04246 AAK_AK-DapG-like AAK_A 99.9 8.3E-26 1.8E-30 223.1 23.2 187 102-316 2-202 (239)
41 KOG1154 Gamma-glutamyl kinase 99.9 1.5E-25 3.3E-30 217.7 15.4 246 99-447 9-277 (285)
42 COG0549 ArcC Carbamate kinase 99.9 1.5E-24 3.3E-29 216.3 22.8 258 100-445 1-312 (312)
43 PRK08210 aspartate kinase I; R 99.9 2.5E-24 5.4E-29 227.7 23.2 192 99-317 1-210 (403)
44 COG1608 Predicted archaeal kin 99.9 2.2E-23 4.7E-28 204.1 21.4 236 102-444 3-251 (252)
45 cd04234 AAK_AK AAK_AK: Amino A 99.9 5.9E-24 1.3E-28 208.9 17.5 175 101-316 1-189 (227)
46 TIGR01092 P5CS delta l-pyrroli 99.9 1E-23 2.2E-28 237.6 21.3 249 99-447 7-277 (715)
47 PRK06635 aspartate kinase; Rev 99.9 6.4E-23 1.4E-27 216.7 24.9 190 99-316 1-204 (404)
48 TIGR00656 asp_kin_monofn aspar 99.9 3.4E-23 7.3E-28 218.6 22.7 192 100-317 1-206 (401)
49 PLN02418 delta-1-pyrroline-5-c 99.9 4.3E-23 9.3E-28 232.6 22.9 247 99-447 15-285 (718)
50 PRK00358 pyrH uridylate kinase 99.9 6.6E-22 1.4E-26 194.3 22.7 215 100-444 1-231 (231)
51 PRK08841 aspartate kinase; Val 99.9 1.4E-21 3.1E-26 206.6 24.9 191 100-317 2-205 (392)
52 cd04239 AAK_UMPK-like AAK_UMPK 99.9 1.3E-21 2.9E-26 192.2 22.7 214 101-444 1-229 (229)
53 PRK07431 aspartate kinase; Pro 99.9 2.1E-21 4.6E-26 214.6 26.0 187 100-316 2-206 (587)
54 cd04255 AAK_UMPK-MosAB AAK_UMP 99.9 8.8E-21 1.9E-25 190.7 22.5 212 100-444 31-262 (262)
55 cd04254 AAK_UMPK-PyrH-Ec UMP k 99.9 6.4E-21 1.4E-25 187.9 20.8 216 100-444 1-231 (231)
56 PRK14558 pyrH uridylate kinase 99.9 4.9E-20 1.1E-24 181.5 23.2 215 100-446 1-231 (231)
57 TIGR00657 asp_kinases aspartat 99.9 1.6E-20 3.6E-25 200.9 19.6 196 101-317 2-245 (441)
58 TIGR02075 pyrH_bact uridylate 99.8 1.7E-19 3.7E-24 178.1 22.4 215 100-444 2-233 (233)
59 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.8 4.8E-19 1E-23 173.4 21.5 210 101-444 1-221 (221)
60 TIGR02076 pyrH_arch uridylate 99.8 5.2E-19 1.1E-23 172.9 21.5 210 102-444 1-221 (221)
61 cd04240 AAK_UC AAK_UC: Unchara 99.8 1.2E-17 2.6E-22 162.1 18.4 149 103-312 1-157 (203)
62 PRK14557 pyrH uridylate kinase 99.8 9.1E-17 2E-21 160.5 24.7 217 100-447 5-240 (247)
63 PRK06291 aspartate kinase; Pro 99.7 5.2E-16 1.1E-20 167.7 21.0 265 101-476 2-352 (465)
64 cd04244 AAK_AK-LysC-like AAK_A 99.7 3.4E-16 7.5E-21 160.2 17.4 198 101-317 1-261 (298)
65 PRK14556 pyrH uridylate kinase 99.7 2.2E-15 4.9E-20 150.4 22.4 218 100-446 16-249 (249)
66 COG0527 LysC Aspartokinases [A 99.7 4.6E-15 1E-19 159.4 22.7 199 100-320 2-254 (447)
67 PRK08373 aspartate kinase; Val 99.7 1.4E-14 2.9E-19 151.0 22.1 194 98-316 2-242 (341)
68 cd04259 AAK_AK-DapDC AAK_AK-Da 99.5 3.7E-13 8.1E-18 137.8 19.5 199 102-317 2-258 (295)
69 TIGR02078 AspKin_pair Pyrococc 99.5 7E-13 1.5E-17 137.5 18.8 78 238-315 144-231 (327)
70 COG0528 PyrH Uridylate kinase 99.5 3.3E-12 7.1E-17 125.7 22.2 217 98-444 4-237 (238)
71 cd04257 AAK_AK-HSDH AAK_AK-HSD 99.5 2E-12 4.2E-17 132.5 18.8 192 102-317 2-257 (294)
72 cd04243 AAK_AK-HSDH-like AAK_A 99.5 2.3E-12 4.9E-17 131.9 18.1 78 241-318 168-257 (293)
73 PRK09084 aspartate kinase III; 99.4 5.8E-12 1.3E-16 135.8 19.4 190 101-317 1-251 (448)
74 PRK08961 bifunctional aspartat 99.4 1.8E-12 3.9E-17 149.7 16.5 148 240-477 178-354 (861)
75 cd04245 AAK_AKiii-YclM-BS AAK_ 99.4 2.1E-11 4.6E-16 124.6 20.4 80 239-318 162-252 (288)
76 PRK09034 aspartate kinase; Rev 99.4 2.4E-11 5.1E-16 131.3 21.2 80 239-318 162-252 (454)
77 PRK05925 aspartate kinase; Pro 99.4 1.7E-11 3.6E-16 132.0 18.3 71 247-317 161-242 (440)
78 PRK09436 thrA bifunctional asp 99.3 3.9E-11 8.5E-16 137.9 19.7 145 242-476 172-346 (819)
79 cd04258 AAK_AKiii-LysC-EC AAK_ 99.3 3.5E-11 7.5E-16 123.2 16.9 71 248-318 175-256 (292)
80 PLN02551 aspartokinase 99.3 8.6E-11 1.9E-15 128.9 20.1 197 100-320 52-313 (521)
81 cd04247 AAK_AK-Hom3 AAK_AK-Hom 99.3 6.7E-11 1.4E-15 121.9 16.2 70 250-319 189-269 (306)
82 PRK09466 metL bifunctional asp 99.2 3.3E-10 7.1E-15 130.0 19.9 80 241-320 173-265 (810)
83 COG1246 ArgA N-acetylglutamate 98.6 2E-08 4.3E-13 93.6 2.5 44 449-493 1-44 (153)
84 COG2054 Uncharacterized archae 98.5 3.8E-06 8.2E-11 80.3 16.4 112 250-445 92-210 (212)
85 cd04248 AAK_AK-Ectoine AAK_AK- 98.5 5.3E-06 1.1E-10 85.6 17.6 79 242-320 177-270 (304)
86 PRK09181 aspartate kinase; Val 98.4 2.2E-05 4.8E-10 85.8 19.7 80 241-320 182-276 (475)
87 KOG0456 Aspartate kinase [Amin 97.4 0.00061 1.3E-08 72.0 9.3 72 249-320 257-340 (559)
88 PHA03398 viral phosphatase sup 61.2 28 0.00062 36.5 7.4 57 100-156 129-191 (303)
89 TIGR01684 viral_ppase viral ph 57.9 37 0.00081 35.6 7.6 58 99-156 126-189 (301)
90 cd07041 STAS_RsbR_RsbS_like Su 57.6 65 0.0014 27.4 8.0 70 84-154 25-96 (109)
91 PF04768 DUF619: Protein of un 52.5 14 0.0003 35.4 3.3 19 429-447 2-20 (170)
92 TIGR01668 YqeG_hyp_ppase HAD s 51.7 1.3E+02 0.0029 28.1 9.7 59 95-153 21-84 (170)
93 PLN02645 phosphoglycolate phos 51.4 67 0.0015 33.2 8.3 67 78-153 16-87 (311)
94 PRK12702 mannosyl-3-phosphogly 40.8 1E+02 0.0022 32.5 7.5 55 100-154 2-59 (302)
95 TIGR01656 Histidinol-ppas hist 40.7 1.7E+02 0.0038 26.4 8.5 38 116-153 29-82 (147)
96 PRK00192 mannosyl-3-phosphogly 40.4 90 0.002 31.3 7.1 56 99-154 4-62 (273)
97 PRK15126 thiamin pyrimidine py 39.3 1E+02 0.0023 30.6 7.3 64 100-163 3-71 (272)
98 COG1366 SpoIIAA Anti-anti-sigm 39.2 2.2E+02 0.0047 24.8 8.6 73 83-156 27-101 (117)
99 KOG3216 Diamine acetyltransfer 38.6 18 0.0004 34.4 1.6 38 449-486 4-44 (163)
100 PRK01158 phosphoglycolate phos 38.4 1.1E+02 0.0023 29.4 7.1 55 100-154 4-61 (230)
101 TIGR02463 MPGP_rel mannosyl-3- 38.0 1.1E+02 0.0025 29.2 7.1 52 102-153 2-56 (221)
102 PRK10976 putative hydrolase; P 37.9 1.1E+02 0.0024 30.2 7.2 64 100-163 3-71 (266)
103 PF10686 DUF2493: Protein of u 36.3 1E+02 0.0022 25.3 5.5 39 101-141 4-42 (71)
104 TIGR01689 EcbF-BcbF capsule bi 36.2 1.6E+02 0.0036 26.8 7.4 40 100-139 2-49 (126)
105 PTZ00063 histone deacetylase; 36.1 1.4E+02 0.0029 33.1 8.0 63 80-142 231-301 (436)
106 TIGR01452 PGP_euk phosphoglyco 34.7 1.1E+02 0.0023 31.0 6.7 56 99-154 2-62 (279)
107 cd06844 STAS Sulphate Transpor 33.6 2.6E+02 0.0055 23.5 7.9 69 84-153 23-93 (100)
108 PRK07922 N-acetylglutamate syn 33.0 27 0.00059 32.7 1.9 40 450-489 7-46 (169)
109 COG0561 Cof Predicted hydrolas 32.8 1.3E+02 0.0028 29.7 6.8 55 100-154 4-61 (264)
110 PRK10530 pyridoxal phosphate ( 32.8 1.4E+02 0.003 29.4 6.9 64 100-163 4-72 (272)
111 TIGR01457 HAD-SF-IIA-hyp2 HAD- 32.3 1.2E+02 0.0026 30.2 6.5 54 100-153 2-60 (249)
112 PRK10444 UMP phosphatase; Prov 32.0 1.2E+02 0.0027 30.4 6.5 54 100-153 2-60 (248)
113 PTZ00174 phosphomannomutase; P 31.8 84 0.0018 31.2 5.2 41 100-140 6-48 (247)
114 TIGR01487 SPP-like sucrose-pho 31.4 1.7E+02 0.0037 27.9 7.2 54 100-153 2-58 (215)
115 PRK10513 sugar phosphate phosp 30.7 1.6E+02 0.0035 29.1 7.1 54 100-153 4-60 (270)
116 PRK03669 mannosyl-3-phosphogly 30.2 1.7E+02 0.0037 29.3 7.2 54 100-153 8-64 (271)
117 TIGR01458 HAD-SF-IIA-hyp3 HAD- 29.3 1.3E+02 0.0029 30.1 6.2 54 100-153 2-64 (257)
118 COG5630 ARG2 Acetylglutamate s 29.3 33 0.00072 37.1 1.9 137 101-265 142-278 (495)
119 TIGR01662 HAD-SF-IIIA HAD-supe 28.7 1.8E+02 0.0038 25.5 6.3 54 100-153 1-73 (132)
120 PF00850 Hist_deacetyl: Histon 28.7 1.9E+02 0.0042 30.0 7.5 63 80-142 221-295 (311)
121 TIGR01681 HAD-SF-IIIC HAD-supe 27.7 4.3E+02 0.0093 23.4 8.6 51 101-151 2-68 (128)
122 TIGR02461 osmo_MPG_phos mannos 27.3 2.1E+02 0.0046 28.0 7.2 52 102-153 2-55 (225)
123 TIGR01459 HAD-SF-IIA-hyp4 HAD- 26.2 1.8E+02 0.004 28.5 6.5 55 100-154 9-67 (242)
124 PTZ00346 histone deacetylase; 25.5 2.5E+02 0.0054 31.0 7.8 61 80-140 249-317 (429)
125 PF13344 Hydrolase_6: Haloacid 25.1 1.9E+02 0.0041 24.9 5.6 50 105-154 4-58 (101)
126 PRK07757 acetyltransferase; Pr 24.7 59 0.0013 29.0 2.5 42 450-491 3-44 (152)
127 TIGR01491 HAD-SF-IB-PSPlk HAD- 23.9 1.4E+02 0.0031 27.6 5.1 38 117-154 83-121 (201)
128 TIGR00521 coaBC_dfp phosphopan 23.5 2.6E+02 0.0055 30.4 7.4 62 79-140 165-235 (390)
129 COG0123 AcuC Deacetylases, inc 23.5 3.7E+02 0.008 28.7 8.5 63 80-142 220-294 (340)
130 COG0560 SerB Phosphoserine pho 23.3 1.2E+02 0.0025 29.9 4.5 36 119-154 82-118 (212)
131 PF13840 ACT_7: ACT domain ; P 23.0 50 0.0011 26.2 1.5 20 457-476 18-38 (65)
132 PF13419 HAD_2: Haloacid dehal 22.3 3.6E+02 0.0078 23.6 7.2 39 116-154 79-118 (176)
133 KOG1615 Phosphoserine phosphat 22.0 1.3E+02 0.0028 30.0 4.4 69 81-154 58-129 (227)
134 TIGR00099 Cof-subfamily Cof su 21.6 3.3E+02 0.0071 26.7 7.3 52 102-153 2-56 (256)
135 TIGR01664 DNA-3'-Pase DNA 3'-p 21.3 2.6E+02 0.0055 26.2 6.2 41 100-140 14-68 (166)
136 PTZ00124 adenosine deaminase; 21.0 1E+03 0.023 25.4 12.5 98 116-259 205-309 (362)
137 COG0826 Collagenase and relate 20.7 5.6E+02 0.012 27.4 9.2 82 84-169 48-131 (347)
138 TIGR02886 spore_II_AA anti-sig 20.6 5.1E+02 0.011 21.7 8.2 56 99-155 39-95 (106)
139 PF01740 STAS: STAS domain; I 20.6 4.3E+02 0.0092 22.5 7.0 54 100-154 49-103 (117)
140 PF08282 Hydrolase_3: haloacid 20.0 3.3E+02 0.0072 25.5 6.8 51 102-152 1-54 (254)
No 1
>PLN02825 amino-acid N-acetyltransferase
Probab=100.00 E-value=3.4e-91 Score=752.52 Aligned_cols=401 Identities=75% Similarity=1.175 Sum_probs=367.2
Q ss_pred HHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccC
Q 010333 83 FVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRI 162 (513)
Q Consensus 83 fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~Rv 162 (513)
||+|||+++|||++|||||||||+||+++.++.+.++++||++|+++|+++||||||||||++.|+++|++++|++|+||
T Consensus 1 ~v~~fr~a~pYI~~~rgktfVIk~gG~~l~~~~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RV 80 (515)
T PLN02825 1 FVRWFREAWPYIQGHRGSTFVVVISGEVVAGPHLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRI 80 (515)
T ss_pred ChhHHHhhhHHHHHHCCCEEEEEECchhhcCchHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCccc
Confidence 79999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHH
Q 010333 163 TDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 242 (513)
Q Consensus 163 Td~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~ 242 (513)
||+++|+++++++|++|.+|++.||+||+|..|+++|.++||+++++++.||||++|+|+|++||+||+|+|+|++||++
T Consensus 81 Td~~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~ 160 (515)
T PLN02825 81 TDSAALQASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVS 160 (515)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccCCCCccccccCHHHHHHHHHHhhhh
Q 010333 243 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQ 322 (513)
Q Consensus 243 ~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld~~g~lI~~Lt~~Ea~~ll~~~~~~ 322 (513)
.|+.+|++|.|||++|+|+|++||+||+|+|++|+++|.+|+|||||||||+++++.+|++|++++.+|++++++++++|
T Consensus 161 ~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~~~~~~g~li~~l~~~e~~~li~~~~~~ 240 (515)
T PLN02825 161 RIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGPILDENGRLIRFMTLEEADMLIRKRAKQ 240 (515)
T ss_pred HHHHHHhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcceecCCCCCcCcCCHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999887888
Q ss_pred hhHHHhHHhhhhcccccc---cCCCCCCCccccCCCCCcccc-------cccccccCCCcccCCCCCccccccccccccc
Q 010333 323 SEIAANYVKAVAEEDITC---FGHSDSIGSVYSSQNGKTFSE-------RRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 392 (513)
Q Consensus 323 ~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~ 392 (513)
++|+|++.|||.+++..+ ++. .+..|.|... ...-.|.+++++.++.| .++.++|++|++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 311 (515)
T PLN02825 241 SEIAANYVKAVGGEDYSYSLGLDS--------VNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNG-LSGEQGFAIGGEE 311 (515)
T ss_pred chhhhhhhhhcccccccccccccc--------ccccccccccccccccccccccccccccccCccc-ccccccccccchh
Confidence 999999999999886432 110 0000111111 11113445555555444 2567999999999
Q ss_pred hhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCCcccccccccChHhHHHhhhhhHhc
Q 010333 393 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVES 472 (513)
Q Consensus 393 ~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ye~iR~A~~~Dv~gI~~Li~PLe~~ 472 (513)
++++..++++||.+|++||++||+||||+|++.||+||+||||+||+||||++|+||+||+|+++|+++|++|++|++++
T Consensus 312 ~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~~~~e~IR~At~eDi~~I~~Li~~lee~ 391 (515)
T PLN02825 312 RLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIASDMYEGTRMARVEDLAGIRQIIRPLEES 391 (515)
T ss_pred hchhhhhHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEeccChHhhheeCCHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCHHHHHHHhhccch
Q 010333 473 GALVRRTDEEVRALALSDFC 492 (513)
Q Consensus 473 GiLv~Rs~e~le~~i~~~~~ 492 (513)
|++++|++|+++++++.+|.
T Consensus 392 g~lv~rs~e~le~ei~~f~V 411 (515)
T PLN02825 392 GILVRRTDEELLRALDSFVV 411 (515)
T ss_pred CCCcCCCHHHHHhcCCcEEE
Confidence 99999999999999965443
No 2
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=100.00 E-value=4e-65 Score=542.09 Aligned_cols=324 Identities=43% Similarity=0.666 Sum_probs=301.1
Q ss_pred HHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccC
Q 010333 83 FVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRI 162 (513)
Q Consensus 83 fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~Rv 162 (513)
||.|||+|+|||++|||+++|||+||++++++++.++++||++|+..|+++||||||||+|++.++++|++++|++|+|+
T Consensus 1 ~~~~~~~~~~~i~~~~~~~~ViK~GG~~~~~~~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~Rv 80 (429)
T TIGR01890 1 FVAWFREAAPYINAHRGKTFVVGLGGELVEGGNLGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRV 80 (429)
T ss_pred ChhHHhhhhHHHHHhCCCEEEEEEChhhccCccHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCccc
Confidence 89999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHH
Q 010333 163 TDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 242 (513)
Q Consensus 163 Td~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~ 242 (513)
||+++|++++.++|++|.+|++.|++ ++-..|++++++++.|||+++|+|+++.+++|++|+|+|+++|++
T Consensus 81 T~~~~l~~~~~~~g~vn~~l~~~l~~---------~~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~ 151 (429)
T TIGR01890 81 TDEASLEQAQQAAGTLRLAIEARLSM---------SLSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTE 151 (429)
T ss_pred CCHHHHHHHHHHhChHHHHHHHHHHh---------cCCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcHH
Confidence 99999999966799999999998653 322334556789999999999999998899999999999999999
Q ss_pred HHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeeccccc-CCCCccccccCHHHHHHHHHHhhh
Q 010333 243 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQEADSLIRQRVK 321 (513)
Q Consensus 243 ~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gl-d~~g~lI~~Lt~~Ea~~ll~~~~~ 321 (513)
.|+.+|++|+|||++|++++.+|+.+|+|+|++|+++|.+|+|+||||+||++|+ +.+|++|++++.+|+++++...
T Consensus 152 ~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~~g~~i~~i~~~~~~~l~~~~-- 229 (429)
T TIGR01890 152 GIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDPDGTLAAELSPQEVESLAERL-- 229 (429)
T ss_pred HHHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCcccCCHHHHHHHHHhc--
Confidence 9999999999999999999999999999999999999999999999999999997 4579999999999999887431
Q ss_pred hhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcH
Q 010333 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (513)
Q Consensus 322 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~ 401 (513)
.| || |.
T Consensus 230 -----------------------------------------------------~~-~~--------------------~~ 235 (429)
T TIGR01890 230 -----------------------------------------------------GS-ET--------------------TR 235 (429)
T ss_pred -----------------------------------------------------cC-CC--------------------cH
Confidence 12 32 58
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCCcccccccccChHhHHHhhhhhHhcCccccCCHH
Q 010333 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDE 481 (513)
Q Consensus 402 ~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ye~iR~A~~~Dv~gI~~Li~PLe~~GiLv~Rs~e 481 (513)
+||++|..|++.||++|||+|++.+++|+.|||+++|.||+|..+.|..||+|+.+|++.|.+|++|+++++....|+++
T Consensus 236 ~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~y~~IR~at~~Dl~~I~~L~~~~~~~~~~~~~~~~ 315 (429)
T TIGR01890 236 RLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEAFESIRQATIDDIGGIAALIRPLEEQGILVRRSRE 315 (429)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccchhheEECCHHHHHHHHHHHHHHHHcCCchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccc
Q 010333 482 EVRALALSDF 491 (513)
Q Consensus 482 ~le~~i~~~~ 491 (513)
.++.++..+|
T Consensus 316 ~l~~~~~~~~ 325 (429)
T TIGR01890 316 YLEREISEFS 325 (429)
T ss_pred HHHhhcCcEE
Confidence 9999985544
No 3
>PRK05279 N-acetylglutamate synthase; Validated
Probab=100.00 E-value=3e-61 Score=513.72 Aligned_cols=331 Identities=44% Similarity=0.697 Sum_probs=301.8
Q ss_pred hhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCC
Q 010333 80 DEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGR 159 (513)
Q Consensus 80 ~~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G 159 (513)
...|+++||+++|||++||++++|||+||+++.+++++++++||+.|+..|+++||||||+||+++.++++|++++|++|
T Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~~VIk~GG~~l~~~~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G 85 (441)
T PRK05279 6 STEFVDWFRHSAPYINAHRGKTFVIMLGGEAIAHGNFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKG 85 (441)
T ss_pred hhHHHHHHHHHhHHHHHhCCCEEEEEECchhccChhHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCC
Confidence 45699999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEe
Q 010333 160 YRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKV 239 (513)
Q Consensus 160 ~RvTd~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~V 239 (513)
+|+|++++|+++.++.|++|..|++.++.|++ ..++++..+++.||+++.++|+++.+++|++|+|+|+.+
T Consensus 86 ~RvT~~~~l~~~~~~~g~v~~~l~~~l~~g~~---------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v 156 (441)
T PRK05279 86 LRVTDAAALECVKQAAGELRLDIEARLSMGLP---------NTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRI 156 (441)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHhccCC---------CCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEE
Confidence 99999999999966679999999998765432 123345568889999999999998889999999999999
Q ss_pred cHHHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeeccccc-CCCCccccccCHHHHHHHHHH
Q 010333 240 DVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQEADSLIRQ 318 (513)
Q Consensus 240 d~~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gl-d~~g~lI~~Lt~~Ea~~ll~~ 318 (513)
|.+.|+.+|++|+|||++|++++++|+.+|+|+|++|+++|.+|+||+|||+||++|+ ++++++|++++.+++++++..
T Consensus 157 ~~~~i~~ll~~g~ipV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~~~~~i~~i~~~~~~~~~~~ 236 (441)
T PRK05279 157 DAEAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDEDGELIRELSPNEAQALLEA 236 (441)
T ss_pred eHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCCCchhhhCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999987 467999999999999888742
Q ss_pred hhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhcccc
Q 010333 319 RVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLN 398 (513)
Q Consensus 319 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~ 398 (513)
-. .|.+ +| |
T Consensus 237 ~~--------------------------~~~~------------------------~g-g-------------------- 245 (441)
T PRK05279 237 LE--------------------------DGDY------------------------NS-G-------------------- 245 (441)
T ss_pred hh--------------------------cCCC------------------------Cc-c--------------------
Confidence 10 0011 34 5
Q ss_pred CcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCCcccccccccChHhHHHhhhhhHhcCccccC
Q 010333 399 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRR 478 (513)
Q Consensus 399 ~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ye~iR~A~~~Dv~gI~~Li~PLe~~GiLv~R 478 (513)
|.+||++|..|+++||++|||+|++.+++|+.|||+.+|.||+|.++.|..||+|+.+|++.|.+|++|+++.+.+..+
T Consensus 246 -M~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~~y~~IR~at~~D~~~I~~L~~~~~~~~~~~~~ 324 (441)
T PRK05279 246 -TARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVMESLEQLRRATIDDVGGILELIRPLEEQGILVRR 324 (441)
T ss_pred -HHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecCchHHeEeCCHHHHHHHHHHHHHHHHcCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhccc
Q 010333 479 TDEEVRALALSDF 491 (513)
Q Consensus 479 s~e~le~~i~~~~ 491 (513)
+++.++.++..+|
T Consensus 325 ~~~~l~~~~~~~~ 337 (441)
T PRK05279 325 SREQLEREIDKFT 337 (441)
T ss_pred CHHHHhcccCcEE
Confidence 9999998875443
No 4
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-59 Score=462.80 Aligned_cols=260 Identities=38% Similarity=0.629 Sum_probs=243.3
Q ss_pred cCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHH-HHHH
Q 010333 98 RGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAA 175 (513)
Q Consensus 98 rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a-~~a~ 175 (513)
|+|++|||+||+++.+++ ++++++||++|+..|+++||||||||||++.|+++|++++|++|+|+||+++|+++ |+..
T Consensus 1 ~~k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~ 80 (265)
T COG0548 1 RGKTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLG 80 (265)
T ss_pred CCceEEEEECceeecCchHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHHHHH
Confidence 589999999999999988 89999999999999999999999999999999999999999999999999999998 6777
Q ss_pred hHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEE
Q 010333 176 GGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVI 255 (513)
Q Consensus 176 G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPV 255 (513)
|++|++|++. |+++|.+ ++++++.||||++|+|+++.+++|++|+|+|++||++.|+.+|++|+|||
T Consensus 81 G~vNk~iva~---------l~~~g~~----avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpV 147 (265)
T COG0548 81 GTVNKEIVAR---------LSKHGGQ----AVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPV 147 (265)
T ss_pred HHHHHHHHHH---------HHHhCCc----ceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceE
Confidence 8999999987 5677875 89999999999999999999999999999999999999999999999999
Q ss_pred EcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeeccccc-CCCCc--cccccCHHHHHHHHHHhhhhhhHHHhHHhh
Q 010333 256 LSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGH--LIRFLTLQEADSLIRQRVKQSEIAANYVKA 332 (513)
Q Consensus 256 Ispvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gl-d~~g~--lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~ 332 (513)
++|++++.+|+.||+|+|++|+++|.+|+|+|||||||++|+ +..+. +|++++.+|++++++++.
T Consensus 148 iapia~~~~G~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~~s~i~~~~~~~~~~li~~~~------------ 215 (265)
T COG0548 148 IAPIAVDEDGETLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGDPSLISELDAEEAEELIEQGI------------ 215 (265)
T ss_pred EecceECCCCcEEeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCCceeeccCCHHHHHHHHhcCC------------
Confidence 999999999999999999999999999999999999999987 44444 999999999999986421
Q ss_pred hhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHH
Q 010333 333 VAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCR 412 (513)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~ 412 (513)
+ +| | |.+|+++|+.||+
T Consensus 216 -----------------i------------------------~~-G---------------------Mi~Kv~~a~~A~~ 232 (265)
T COG0548 216 -----------------I------------------------TG-G---------------------MIPKVEAALEALE 232 (265)
T ss_pred -----------------c------------------------cC-c---------------------cHHHHHHHHHHHH
Confidence 1 23 5 9999999999999
Q ss_pred cCCCEEEEecCCCchhhHHHHHcCCCCeeEEec
Q 010333 413 RGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (513)
Q Consensus 413 ~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~ 445 (513)
.||+||||+|++.+++||+||||++|+||||.+
T Consensus 233 ~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 233 SGVRRVHIISGRVPHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred hCCCeEEEecCCCcchHHHHHhcCCCcceEecC
Confidence 999999999999999999999999999999964
No 5
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=5.9e-58 Score=463.01 Aligned_cols=279 Identities=52% Similarity=0.806 Sum_probs=256.3
Q ss_pred HHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCcc
Q 010333 82 QFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYR 161 (513)
Q Consensus 82 ~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~R 161 (513)
+||.|||+++|||++||+|++|||+||+++.+++++++++||+.|++.|+++||||||+||++++++++|++++|++|+|
T Consensus 1 ~~~~~~~~~~~yi~~~~~~~~VIKlGG~ai~~~~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~R 80 (280)
T cd04237 1 QFVDWFREAAPYINAHRGKTFVIAFGGEAVAHPNFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLR 80 (280)
T ss_pred ChHHHHHHHhHHHHHhCCCEEEEEEChHHhcCchHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcC
Confidence 59999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecH
Q 010333 162 ITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV 241 (513)
Q Consensus 162 vTd~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~ 241 (513)
+||+++|+++.++.|++++.|++.|+.|+. ..|+++.++++.|++++.++|+|+.+++||+|+|+|+.+|.
T Consensus 81 vT~~~~l~~~~~~~g~v~~~l~~~l~~~~~---------a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~ 151 (280)
T cd04237 81 ITDAAALECVKEAAGAVRLEIEALLSMGLP---------NSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDA 151 (280)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhhcc---------ccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcH
Confidence 999999999966689999999998654322 22334457889999999999999889999999999999999
Q ss_pred HHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-CCCccccccCHHHHHHHHHHhh
Q 010333 242 TRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRV 320 (513)
Q Consensus 242 ~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-~~g~lI~~Lt~~Ea~~ll~~~~ 320 (513)
+.|+++|++|+|||++|++++++|+.+|+|+|++|+++|.+|+||||+|+||++|+. .++++|++++.+|+++++..+.
T Consensus 152 ~~i~~lL~~g~ipv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~~~~~i~~i~~~e~~~l~~~~~ 231 (280)
T cd04237 152 DAIRRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDDDGELIRELTAQEAEALLETGA 231 (280)
T ss_pred HHHHHHHHCCCEEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCccccCCHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999975 5799999999999999985421
Q ss_pred hhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCc
Q 010333 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (513)
Q Consensus 321 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m 400 (513)
+ -+| | |
T Consensus 232 -----------------------------~-----------------------~~g-g---------------------M 237 (280)
T cd04237 232 -----------------------------L-----------------------LTN-D---------------------T 237 (280)
T ss_pred -----------------------------C-----------------------CCC-C---------------------H
Confidence 0 034 5 9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEE
Q 010333 401 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (513)
Q Consensus 401 ~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I 443 (513)
.+||++|.+|++.||+++||+|++.+++|+.|+|+++|.||+|
T Consensus 238 ~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 238 ARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 9999999999999999999999999999999999999999986
No 6
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=100.00 E-value=1.5e-56 Score=453.65 Aligned_cols=275 Identities=27% Similarity=0.450 Sum_probs=253.0
Q ss_pred ChhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCcccc
Q 010333 79 EDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYL 157 (513)
Q Consensus 79 ~~~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~ 157 (513)
...+++.|||+++|||++||+++||||+||+++.++. .+.+++||++|+..|+++|||||||||+++.++++|++++|+
T Consensus 3 ~~~~~~~~~~~~~pyi~~~~~~~~VIk~gG~~~~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~ 82 (284)
T CHL00202 3 NNDERVQVLSEALPYIQKFRGRIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFW 82 (284)
T ss_pred chHHHHHHHHHHHHHHHHHcCCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeE
Confidence 3457899999999999999999999999999998877 569999999999999999999999999999999999999999
Q ss_pred CCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceE
Q 010333 158 GRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV 236 (513)
Q Consensus 158 ~G~RvTd~~~L~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~V 236 (513)
+|+|+|++++|+++ ++.+|++|.+|++. |+++|++ ++++++.|+++++++|. +++|++|+|+|
T Consensus 83 ~G~rvT~~~~l~~~~~~l~g~ln~~lv~~---------L~~~Gv~----av~l~~~d~~~i~a~~~---~~~d~~~~G~i 146 (284)
T CHL00202 83 NGIRVTDKVTMEIVEMVLAGKVNKDLVGS---------INANGGK----AVGLCGKDANLIVARAS---DKKDLGLVGEI 146 (284)
T ss_pred CCcccCCHHHHHHHHHHHhhHHHHHHHHH---------HHhCCCC----eeeeeeccCCEEEEEeC---CCcccccceeE
Confidence 99999999999998 56889999999987 5677876 89999999999999984 56799999999
Q ss_pred EEecHHHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccCC----CCccccccCHHHH
Q 010333 237 KKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEA 312 (513)
Q Consensus 237 r~Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld~----~g~lI~~Lt~~Ea 312 (513)
+++|.+.|+.+|++|.|||++|++++.+|+.+|+|+|++|+++|.+|+||+|+|+||++|+.. .+++|++++.+|+
T Consensus 147 ~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~~d~~~~i~~i~~~e~ 226 (284)
T CHL00202 147 QQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADINDPNSLISTLNIKEA 226 (284)
T ss_pred EecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCCCCCCCccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999742 3789999999888
Q ss_pred HHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccc
Q 010333 313 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 392 (513)
Q Consensus 313 ~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~ 392 (513)
++++..+ ..+| |
T Consensus 227 ~~l~~~g-----------------------------------------------------~~tG-G-------------- 238 (284)
T CHL00202 227 RNLASTG-----------------------------------------------------IISG-G-------------- 238 (284)
T ss_pred HHHHhcC-----------------------------------------------------CCCC-C--------------
Confidence 8886321 1145 5
Q ss_pred hhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 393 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 393 ~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
|.+||++|..|+++|++++||+|++.+++||.|+|+++|.||+|.
T Consensus 239 -------M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 239 -------MIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred -------HHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 999999999999999999999999999999999999999999995
No 7
>PLN02512 acetylglutamate kinase
Probab=100.00 E-value=4.8e-53 Score=432.71 Aligned_cols=276 Identities=29% Similarity=0.483 Sum_probs=253.3
Q ss_pred hhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCCh-HHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccC
Q 010333 80 DEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYL-DPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG 158 (513)
Q Consensus 80 ~~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~l-~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~ 158 (513)
...|+.|||+++|||++||+||+||||||++++++++ ..+++||+.|+..|.++|||||||+|+++.++++|++++|++
T Consensus 28 ~~~~~~~~r~~~pyi~~~~~~tiVIKlGGs~i~d~~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~~ 107 (309)
T PLN02512 28 NLSRVDILSEALPFIQRFRGKTVVVKYGGAAMKDPELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKN 107 (309)
T ss_pred hHHHHHHHHHHhHHHHHHCCCeEEEEECCeeccChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCCC
Confidence 4589999999999999999999999999999999874 679999999999999999999999999999999999999999
Q ss_pred CccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEE
Q 010333 159 RYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVK 237 (513)
Q Consensus 159 G~RvTd~~~L~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr 237 (513)
|+|+|++++++++ ++++|++|.+|++. |+++|++ ++++++.|++|+++++.+ +++|++++|+++
T Consensus 108 G~rvT~~~~lei~~~~l~g~ln~~lv~~---------L~~~Gv~----av~l~g~d~~~i~a~~~~--~~~~~~~~G~i~ 172 (309)
T PLN02512 108 GLRVTDAETMEVVEMVLVGKVNKSLVSL---------INKAGGT----AVGLSGKDGRLLRARPSP--NSADLGFVGEVT 172 (309)
T ss_pred CCcCCCHHHHHHHHHHHhhHHHHHHHHH---------HHHcCCC----eEEeehhhCCEEEEEEcC--cCccccccceee
Confidence 9999999999998 56789999999886 6789987 799999999999999863 457999999999
Q ss_pred EecHHHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC----CCCccccccCHHHHH
Q 010333 238 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEAD 313 (513)
Q Consensus 238 ~Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld----~~g~lI~~Lt~~Ea~ 313 (513)
.+|.+.|+.+|+.|.|||++|++++++|+.+|+|+|++|+++|.+|+||+|+|+||++|+. +++++|++++.+|++
T Consensus 173 ~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~~~~~lI~~i~~~e~~ 252 (309)
T PLN02512 173 RVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKDDPGSLVKELDIKGVR 252 (309)
T ss_pred ecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCCCCcCCCcccCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999874 358999999999888
Q ss_pred HHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccch
Q 010333 314 SLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQER 393 (513)
Q Consensus 314 ~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~ 393 (513)
+++..+ ..+| |
T Consensus 253 ~l~~~~-----------------------------------------------------~vtG-G--------------- 263 (309)
T PLN02512 253 KLIADG-----------------------------------------------------KIAG-G--------------- 263 (309)
T ss_pred HHHhCC-----------------------------------------------------CCCC-c---------------
Confidence 876321 0145 5
Q ss_pred hccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEec
Q 010333 394 LSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (513)
Q Consensus 394 ~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~ 445 (513)
|.+||++|..+++.|+++|||+++..++.|+.++|++++.||+|..
T Consensus 264 ------M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~ 309 (309)
T PLN02512 264 ------MIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMITG 309 (309)
T ss_pred ------HHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEeC
Confidence 9999999999999999999999999999999999999999999963
No 8
>PRK00942 acetylglutamate kinase; Provisional
Probab=100.00 E-value=5.5e-52 Score=419.21 Aligned_cols=276 Identities=34% Similarity=0.533 Sum_probs=253.5
Q ss_pred hHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCC
Q 010333 81 EQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGR 159 (513)
Q Consensus 81 ~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G 159 (513)
..++.|||+++|||++||++++||||||+++++++ +.++++||+.|++.|.++|||||+++++++.++++|+++++.+|
T Consensus 5 ~~~~~~~r~~~~yi~~~~~~~iViK~GGs~l~~~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g 84 (283)
T PRK00942 5 LEKAEVLSEALPYIQRFMGKTIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNG 84 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCC
Confidence 47999999999999999999999999999999887 68899999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHH-HHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEE
Q 010333 160 YRITDSESLAAAM-EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKK 238 (513)
Q Consensus 160 ~RvTd~~~L~~a~-~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~ 238 (513)
+|+|++++|+... +++|++|..+++. |+++|++ ++++++.|++++++++. .+++||+|+|++++
T Consensus 85 ~~~t~~~~l~~~~~a~~G~l~~~i~~~---------L~~~Gv~----a~~l~~~~~~~~ta~~~--~~~~~~~~~g~i~~ 149 (283)
T PRK00942 85 LRVTDAETMEVVEMVLAGKVNKELVSL---------INKHGGK----AVGLSGKDGGLITAKKL--EEDEDLGFVGEVTP 149 (283)
T ss_pred EecCCHHHHHHHHHHHcCchHHHHHHH---------HHhCCCC----ccceeeccCCEEEEEEC--CCCCCCccccceEE
Confidence 9999999999874 4459999999876 6778887 68999999999999987 68899999999999
Q ss_pred ecHHHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-CCCccccccCHHHHHHHHH
Q 010333 239 VDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIR 317 (513)
Q Consensus 239 Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-~~g~lI~~Lt~~Ea~~ll~ 317 (513)
+|.+.|+.+|++|.|||++|++++.+|+++|+|+|++|+.+|.+|+||+|+|+||++|+. .++++|++++.+|+++++.
T Consensus 150 i~~~~l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~~~~~i~~i~~~e~~~~~~ 229 (283)
T PRK00942 150 VNPALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDDKGQLISELTASEAEELIE 229 (283)
T ss_pred ECHHHHHHHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccCCCcccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999985 4699999999999888763
Q ss_pred HhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccc
Q 010333 318 QRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRL 397 (513)
Q Consensus 318 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~ 397 (513)
.+. .+| |
T Consensus 230 ~~~-----------------------------------------------------~tg-g------------------- 236 (283)
T PRK00942 230 DGV-----------------------------------------------------ITG-G------------------- 236 (283)
T ss_pred cCC-----------------------------------------------------CCC-c-------------------
Confidence 210 134 5
Q ss_pred cCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecC
Q 010333 398 NGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (513)
Q Consensus 398 ~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d 446 (513)
|.+|+++|..+++.|+.+|||+|+..+++||.++|+++++||+|.++
T Consensus 237 --m~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 283 (283)
T PRK00942 237 --MIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVPD 283 (283)
T ss_pred --hHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEecC
Confidence 99999999999999999999999999999999999999999999874
No 9
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=100.00 E-value=4.9e-50 Score=404.43 Aligned_cols=269 Identities=32% Similarity=0.516 Sum_probs=247.1
Q ss_pred HHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCH
Q 010333 87 FREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDS 165 (513)
Q Consensus 87 fR~a~pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~ 165 (513)
+|+++|||++||++++||||||+++++++ ..++++||+.|+..|.++|||||+++++++.++++|+++++.+|+|+|++
T Consensus 2 ~~~~~~yi~~~~~~~~ViKlGGs~i~~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~ 81 (279)
T cd04250 2 LIEALPYIQKFRGKTVVIKYGGNAMKDEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDE 81 (279)
T ss_pred hhhhhHHHHHHcCCEEEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCH
Confidence 79999999999999999999999999887 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccc---cccccCcccceEEEecH
Q 010333 166 ESLAAAME-AAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGV---VDGVDYGATGEVKKVDV 241 (513)
Q Consensus 166 ~~L~~a~~-a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~Gv---idGvD~g~tG~Vr~Vd~ 241 (513)
++++.+.+ .+|++|..|++. |+++|++ ++++++.|++++++++.|+ .+++||+++|+++.+|.
T Consensus 82 ~~~~~~~~~~~g~ln~~l~~~---------L~~~Gv~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~ 148 (279)
T cd04250 82 ETMEIVEMVLVGKVNKEIVSL---------INRAGGK----AVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNP 148 (279)
T ss_pred HHHHHHHHHHcCchHHHHHHH---------HHHcCCC----cceeecCCCCEEEEEECcccccCCCcccCcccceEEEcH
Confidence 99998744 449999999776 6788887 7999999999999999987 68999999999999999
Q ss_pred HHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccCC----CCccccccCHHHHHHHHH
Q 010333 242 TRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEADSLIR 317 (513)
Q Consensus 242 ~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld~----~g~lI~~Lt~~Ea~~ll~ 317 (513)
+.|+.+|+.|.|||++|++++++|+++|+|+|.+|+.+|.+|+||+|+|+||++|++. ++++|++++.+|+++++.
T Consensus 149 ~~i~~ll~~g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~ 228 (279)
T cd04250 149 ELLETLLEAGYIPVIAPVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPNDPGSLISEISLKEAEELIA 228 (279)
T ss_pred HHHHHHHHCCCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCCCccccccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999842 489999999998888763
Q ss_pred HhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccc
Q 010333 318 QRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRL 397 (513)
Q Consensus 318 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~ 397 (513)
.+ ..+| |
T Consensus 229 ~~-----------------------------------------------------~~tG-g------------------- 235 (279)
T cd04250 229 DG-----------------------------------------------------IISG-G------------------- 235 (279)
T ss_pred cC-----------------------------------------------------CCCC-c-------------------
Confidence 21 1145 5
Q ss_pred cCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEE
Q 010333 398 NGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (513)
Q Consensus 398 ~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I 443 (513)
|.+|+++|..|+++|+.+|||+|+..+++||.|+|++++.||+|
T Consensus 236 --m~~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 236 --MIPKVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred --hHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999986
No 10
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-48 Score=409.15 Aligned_cols=422 Identities=39% Similarity=0.527 Sum_probs=357.4
Q ss_pred cccccccccccccccccccccCCCcccCCCCCChhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHHH
Q 010333 47 HHSIKNKERNLSKCKVFSEAMGGNVEETYNPVEDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFL 126 (513)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~l~~l~~dIA~L 126 (513)
+|++|.-..+..+|+.... . =.++++..+|+|+||++|||..||+++|||+.+|.++....+..+++|++.|
T Consensus 50 ~~s~~~~~st~~~~~~~d~-----~---i~~~s~~~~v~~~~e~l~yi~~~~~q~fvV~~~g~~~~t~~~~sl~s~lafl 121 (520)
T KOG2436|consen 50 GWSKPANSSTKSSIADRDA-----L---IPLVSSDTTVRILRESLPYITSFRDQKFVVIKSGEAISTSLLHSLASDLAFL 121 (520)
T ss_pred ccccccccccccccccccc-----c---ccCCCChhHHHHHHHHHHHHHHhcCceEEEEecccccccchHHHHHHHHHHH
Confidence 5556655555555543320 0 0123568899999999999999999999999999999665689999999999
Q ss_pred HhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHH-HHhHHHHHHHHhhCCCCchhhHHhcCCCCcce
Q 010333 127 HHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAME-AAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH 205 (513)
Q Consensus 127 ~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~-a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~ 205 (513)
+..|.++|||||++||+++.|+.+|+++.|.+|+|+||+.+|+++.+ .+++.|..+.. +|+++|.....+
T Consensus 122 ~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~~~~~~~~E~n~~lv~---------nL~~~g~~ar~~ 192 (520)
T KOG2436|consen 122 HHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQAAKESVSLEANLNLVI---------NLSQLGTRARPS 192 (520)
T ss_pred hcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHHhhhcchhhhhhHHHH---------HHHHhhceeccc
Confidence 99999999999999999999999999999999999999999999855 77777766554 467777653222
Q ss_pred eeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCC
Q 010333 206 EVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEA 285 (513)
Q Consensus 206 av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~A 285 (513)
..+..+ |||++|++.||+||.+|+++|+|.++|.+.|+.+++.|.+|+++.++.+.+|+++|||+|++|.++|.+|+|
T Consensus 193 s~g~~v--~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~~L~~ 270 (520)
T KOG2436|consen 193 SSGVRV--GNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELALALGP 270 (520)
T ss_pred cccccc--cceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHhccCc
Confidence 222222 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeec-ccccCCCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCC-CCccccCC-CCCccc--
Q 010333 286 DKLICIID-GPILDESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDS-IGSVYSSQ-NGKTFS-- 360 (513)
Q Consensus 286 DkLIfLTD-v~gld~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~-- 360 (513)
+|+++++| ..+++++|+.++.++.+|..++++...+|..+++++++++.+....-++.+.+ ++.++... ..++.+
T Consensus 271 ~kli~l~d~g~~l~e~ge~~S~l~l~~e~~~l~k~~qq~~~a~~~v~aV~~~~~~~~p~~~s~~i~~~t~~n~~~~~~te 350 (520)
T KOG2436|consen 271 DKLILLMDKGRILKENGEDISSLILQEEDAGLRKPSQQKNIAANNVKAVKDGIDSSLPRPSSYNIAITTQQNLIKELFTE 350 (520)
T ss_pred ceeEEecccccccccCcccccccccchhHhhhhhhhhhcccccccchhhhhheeeccCcCCCCCcceeecccccceeecc
Confidence 99999999 55778999999999999999999888888999999999987765432332111 22222111 011111
Q ss_pred ccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCe
Q 010333 361 ERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMG 440 (513)
Q Consensus 361 ~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~G 440 (513)
+....+|++|.++..++++|+..++++++.+++++|.++.++.+-+|-..|..+++++|..|++..++++++.|.+++.|
T Consensus 351 ~G~~t~~~~gv~~~k~~sl~~~~~~~al~~~~~~~rln~~lse~i~a~~~~~~~i~~~~~~D~~~e~V~~ldkf~~~~~~ 430 (520)
T KOG2436|consen 351 KGAGTLISGGVGINKGNSLISQSFKRALDLEEYIDRLNGSLSELIAAGDYCGGAIKTYELSDGTNEGVLYLDKFAVSGMG 430 (520)
T ss_pred CCCCccccCceeeecCcccccchhhhhcchHHHHHHhhchHHHHHHHHHHhccceEEEEccCCCcccceeeeecccCCcc
Confidence 23566777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCcccccccccChHhHHHhhhhhHhcCccccCCHHHHHHHhh
Q 010333 441 TMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEEVRALAL 488 (513)
Q Consensus 441 T~I~~d~ye~iR~A~~~Dv~gI~~Li~PLe~~GiLv~Rs~e~le~~i~ 488 (513)
|+. .+-|+.+|.+..+|.|+|+..++|+++.+.++.|..|.+....+
T Consensus 431 ~~~-~~V~d~ifn~~~~dfp~i~wr~r~~~~~~~w~f~rs~g~L~~~~ 477 (520)
T KOG2436|consen 431 TGS-SDVSDGIFNVMVEDFPEILWRSRPLNEVNKWYFRRSEGSLRALD 477 (520)
T ss_pred ccc-chhhHHHHHHHHHhhhhheeecccccccceEEEeccHHHHhccC
Confidence 998 88899999999999999999999999999999999888888653
No 11
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=100.00 E-value=8e-46 Score=368.42 Aligned_cols=243 Identities=27% Similarity=0.410 Sum_probs=214.9
Q ss_pred EEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHhHHHHHH
Q 010333 103 VVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMI 182 (513)
Q Consensus 103 VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G~l~~~L 182 (513)
|||+||+++++. ++++++||+.|++.|+++|||||||+|+++.++++|++++|++|+|+||+++|+.++.+++++|.++
T Consensus 2 ViKiGG~~~~~~-l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~~vn~~i 80 (248)
T cd04252 2 VIKVGGAIIEDD-LDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFLEENLKL 80 (248)
T ss_pred EEEEChhhhhcc-HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 899999999875 8999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEcCCccC
Q 010333 183 EAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYS 262 (513)
Q Consensus 183 ~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIspvg~s 262 (513)
++. |.++|++ +++++ .+ +++++| ++++||+|+|+|+++|.+.|+.+|+.|+|||++|++++
T Consensus 81 v~~---------l~~~g~~----a~~l~--~~-~~~a~~---~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~ 141 (248)
T cd04252 81 VEA---------LERNGAR----ARPIT--SG-VFEAEY---LDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAET 141 (248)
T ss_pred HHH---------HHhCCCC----ccccc--Cc-eEEEEE---CcCccCCccCceeeECHHHHHHHHHCCCeEEECCceEC
Confidence 887 5667776 55554 23 558887 47889999999999999999999999999999999999
Q ss_pred CCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-CCCccccccCH-HHHHHHHHHhhhhhhHHHhHHhhhhcccccc
Q 010333 263 SSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTL-QEADSLIRQRVKQSEIAANYVKAVAEEDITC 340 (513)
Q Consensus 263 ~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-~~g~lI~~Lt~-~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~ 340 (513)
++|+++|+|+|++|+++|.+|+|+||||+||++|+. .++++|++++. +++++++..+
T Consensus 142 ~~g~~~nvnaD~~A~~lA~aL~a~kli~ltdv~GV~~~~g~~i~~i~~~~~~~~l~~~~--------------------- 200 (248)
T cd04252 142 PSGQLLNVNADVAAGELARVLEPLKIVFLNETGGLLDGTGKKISAINLDEEYDDLMKQP--------------------- 200 (248)
T ss_pred CCCCEEEECHHHHHHHHHHHcCCCeEEEEECCcccCCCCCCcccccCHHHHHHHHHHcC---------------------
Confidence 999999999999999999999999999999999974 56999999997 4677776321
Q ss_pred cCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHc--CCCEE
Q 010333 341 FGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRR--GVQRV 418 (513)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~--GV~Rv 418 (513)
.+ +| | |.+||++|..+.+. |+..+
T Consensus 201 --------~v------------------------tg-G---------------------M~~Kl~~~~~~~~~~~~~~~v 226 (248)
T cd04252 201 --------WV------------------------KY-G---------------------TKLKIKEIKELLDTLPRSSSV 226 (248)
T ss_pred --------Cc------------------------CC-c---------------------hHHHHHHHHHHHHhCCCceEE
Confidence 02 35 5 89999988887776 66678
Q ss_pred EEecCCCchhhHHHHHcCCCCeeEE
Q 010333 419 HLLDGTIGGVLLLELFKRDGMGTMV 443 (513)
Q Consensus 419 hIv~g~~~gaLL~ELft~dG~GT~I 443 (513)
||.+ +++|+.|||+++|.||+|
T Consensus 227 ~i~~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 227 SITS---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred EEEC---CchHHHHHhcCCCCCccC
Confidence 8887 588999999999999986
No 12
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=1.4e-44 Score=359.92 Aligned_cols=253 Identities=31% Similarity=0.511 Sum_probs=232.6
Q ss_pred EEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHH-hHHH
Q 010333 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAA-GGIR 179 (513)
Q Consensus 102 ~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~-G~l~ 179 (513)
+||||||+++++++ +.++++||++|+..|.++|||||+++++++++++++++.++.+|.|+|++++++.+..++ |++|
T Consensus 1 ~ViKlGGs~l~~~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln 80 (256)
T cd04238 1 VVIKYGGSAMKDEELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVN 80 (256)
T ss_pred CEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchH
Confidence 69999999999987 799999999999999999999999999999999999999999999999999999986666 9999
Q ss_pred HHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEcCC
Q 010333 180 MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL 259 (513)
Q Consensus 180 ~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIspv 259 (513)
..|++. |+++|++ ++++++.|+++++++|.| .+++||+|+|+++.+|.+.|+.+|++|.|||++|+
T Consensus 81 ~~i~~~---------L~~~Gv~----a~~l~~~~~~~~~~~~~~-~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~ 146 (256)
T cd04238 81 KELVSL---------LNRAGGK----AVGLSGKDGGLIKAEKKE-EKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPI 146 (256)
T ss_pred HHHHHH---------HHhCCCC----CCCcccccCCEEEEEECC-CCCCCcccccceEEECHHHHHHHHHCCCEEEECCc
Confidence 999876 6678887 688999999999999999 89999999999999999999999999999999999
Q ss_pred ccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccCC-CCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccc
Q 010333 260 GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE-SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDI 338 (513)
Q Consensus 260 g~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld~-~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~ 338 (513)
+++.+|+++|+|+|++|+.+|.+|+||+|+|+||++|++. ++++|++++.+|+++++..+
T Consensus 147 ~~~~~g~~~~~~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~~------------------- 207 (256)
T cd04238 147 AVDEDGETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDDPGSLISELTPKEAEELIEDG------------------- 207 (256)
T ss_pred EECCCCcEEEECHHHHHHHHHHHcCCCEEEEEeCCccccCCCCCccccCCHHHHHHHHHcC-------------------
Confidence 9999999999999999999999999999999999999854 59999999998888876321
Q ss_pred cccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEE
Q 010333 339 TCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRV 418 (513)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~Rv 418 (513)
..+| | |.+|+++|..+++.|+.+|
T Consensus 208 ----------------------------------~~~g-g---------------------m~~Kl~~a~~~~~~g~~~v 231 (256)
T cd04238 208 ----------------------------------VISG-G---------------------MIPKVEAALEALEGGVRKV 231 (256)
T ss_pred ----------------------------------CCCC-C---------------------hHHHHHHHHHHHHhCCCEE
Confidence 0134 5 9999999999999999999
Q ss_pred EEecCCCchhhHHHHHcCCCCeeEE
Q 010333 419 HLLDGTIGGVLLLELFKRDGMGTMV 443 (513)
Q Consensus 419 hIv~g~~~gaLL~ELft~dG~GT~I 443 (513)
||++++.++.|+.++|++++.||+|
T Consensus 232 ~I~~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 232 HIIDGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred EEeCCCCCcHHHHHHhcCCCCCCCC
Confidence 9999999999999999888999986
No 13
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=100.00 E-value=1.1e-42 Score=349.45 Aligned_cols=250 Identities=31% Similarity=0.425 Sum_probs=222.7
Q ss_pred eEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccC---C--ccCCCHHHHHHHHHHH
Q 010333 101 TFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG---R--YRITDSESLAAAMEAA 175 (513)
Q Consensus 101 t~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~---G--~RvTd~~~L~~a~~a~ 175 (513)
++||||||+++.++ ..+++||++|++.|.++|||||||+|++++++++|++++|++ | .|+|++++|+.++.++
T Consensus 1 ~~ViK~GG~~l~~~--~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~ 78 (268)
T PRK14058 1 MIVVKIGGSVGIDP--EDALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAM 78 (268)
T ss_pred CEEEEEChHHhhCc--HHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHH
Confidence 58999999999885 478999999999999999999999999999999999999998 6 8999999999998788
Q ss_pred hHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeec----ccccc----ccCcccceEEEecHHHHHHH
Q 010333 176 GGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRK----GVVDG----VDYGATGEVKKVDVTRMRER 247 (513)
Q Consensus 176 G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~----GvidG----vD~g~tG~Vr~Vd~~~I~~L 247 (513)
+++|..|++. |+++|++ ++++++.|.++++++++ ++.+| +|++|+|+|+++|.+.|+.+
T Consensus 79 ~~ln~~lv~~---------L~~~Gv~----a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~l 145 (268)
T PRK14058 79 ALINKQLVER---------LQSLGVN----AVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLL 145 (268)
T ss_pred HHHHHHHHHH---------HHhCCCC----ccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHH
Confidence 8999999886 5678877 78888888888887653 44555 69999999999999999999
Q ss_pred hcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC----CCCccccccCHHHHHHHHHHhhhhh
Q 010333 248 LDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEADSLIRQRVKQS 323 (513)
Q Consensus 248 Ld~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld----~~g~lI~~Lt~~Ea~~ll~~~~~~~ 323 (513)
|++|+|||++|++++.+|+.+|+|+|.+|+.+|.+|+||+|+|+||++|++ +++++|++++.+|+++++..
T Consensus 146 l~~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~~----- 220 (268)
T PRK14058 146 LKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPDEGSLIERITPEEAEELSKA----- 220 (268)
T ss_pred HHCCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCCCCcCccCcCHHHHHHHhhc-----
Confidence 999999999999998889999999999999999999999999999999984 34889999998888776421
Q ss_pred hHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHH
Q 010333 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (513)
Q Consensus 324 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~K 403 (513)
.+| | |.+|
T Consensus 221 --------------------------------------------------~tG-g---------------------M~~K 228 (268)
T PRK14058 221 --------------------------------------------------AGG-G---------------------MKKK 228 (268)
T ss_pred --------------------------------------------------cCC-c---------------------cHHH
Confidence 135 5 9999
Q ss_pred HHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEec
Q 010333 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (513)
Q Consensus 404 L~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~ 445 (513)
|++|..|+++|++++||+|++.++.|+.++ +|.||+|.+
T Consensus 229 l~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l---~G~GT~I~~ 267 (268)
T PRK14058 229 VLMAAEAVEGGVGRVIIADANVDDPISAAL---AGEGTVIVN 267 (268)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCcchHHHHh---CCCceEEec
Confidence 999999999999999999999999988777 467999965
No 14
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=100.00 E-value=3.6e-43 Score=353.41 Aligned_cols=254 Identities=19% Similarity=0.217 Sum_probs=209.6
Q ss_pred CCCChhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCc
Q 010333 76 NPVEDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA 154 (513)
Q Consensus 76 ~~~~~~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~ 154 (513)
++.+.++|.+.|..+.|+ -..+.+|||+||+++.+++ ++++++||++|+++|.++|||||||||++..++ +.+.
T Consensus 15 ~~~e~~~~l~~f~~~~~~---~~~~f~VIK~GG~~~~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~--~~~~ 89 (271)
T cd04236 15 DPREARYWLTQFQIAMPN---DWPAFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS--DLEL 89 (271)
T ss_pred CHHHHHHHHHHhhccCCC---CCCCEEEEEEChhhhcCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc--CCcc
Confidence 444455555555555443 1126799999999997655 899999999999999999999999999998887 3222
Q ss_pred cccCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccc
Q 010333 155 KYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATG 234 (513)
Q Consensus 155 ~~~~G~RvTd~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG 234 (513)
.++. +..+ ++|..|++. |+++|++ ++++++. +||++|+| + +|++|+|
T Consensus 90 ~~~~-------------~v~~-~~n~~Lv~~---------L~~~G~~----A~gl~g~-~~~i~a~~--~---~d~g~vG 136 (271)
T cd04236 90 QAAR-------------SRLV-KDCKTLVEA---------LQANSAA----AHPLFSG-ESVLQAEE--P---EPGASKG 136 (271)
T ss_pred hhee-------------hhHH-HHHHHHHHH---------HHhCCCC----eeeecCc-cceEEEEE--c---ccCCccc
Confidence 2111 2233 777778776 6678877 7888877 69999998 2 5788999
Q ss_pred eEEEecHHHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeeccccc-CCCCccccccCH-HHH
Q 010333 235 EVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTL-QEA 312 (513)
Q Consensus 235 ~Vr~Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gl-d~~g~lI~~Lt~-~Ea 312 (513)
+|++||.+.|+.+|++|+|||++|++++++|+++|+|+|++|+++|.+|+|+||||+||++|+ +.++++|++++. +|+
T Consensus 137 ~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~~g~lI~~l~~~~e~ 216 (271)
T cd04236 137 PSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQKHKVLPQVHLPADL 216 (271)
T ss_pred eEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECCCCCCccccCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987 567999999995 899
Q ss_pred HHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccc
Q 010333 313 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 392 (513)
Q Consensus 313 ~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~ 392 (513)
++|++++. + +| ||.+|
T Consensus 217 ~~li~~g~-----------------------------i------------------------~g-Gm~~k---------- 232 (271)
T cd04236 217 PSLSDAEW-----------------------------L------------------------SE-TEQNR---------- 232 (271)
T ss_pred HHHHhCCE-----------------------------E------------------------cC-Ceeec----------
Confidence 99986432 2 24 62111
Q ss_pred hhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEE
Q 010333 393 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (513)
Q Consensus 393 ~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I 443 (513)
.+|+++|..|+..|++ |||++ +..|+.||||+.|.||+|
T Consensus 233 --------i~ki~~~l~~l~~g~s-v~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 233 --------IQDIATLLNALPSMSS-AVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred --------hHHHHHHHHhcccCCe-EEEeC---hHHHHHHHhccCCCCCcC
Confidence 7899999999999999 99998 678999999999999986
No 15
>PRK04531 acetylglutamate kinase; Provisional
Probab=100.00 E-value=5.8e-43 Score=368.88 Aligned_cols=248 Identities=25% Similarity=0.341 Sum_probs=214.2
Q ss_pred CCCCChhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCc
Q 010333 75 YNPVEDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA 154 (513)
Q Consensus 75 ~~~~~~~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~ 154 (513)
|++++..+|++|||+++|| +++|||+||+++.+ .++.+++||++|+..|+++||||||||||++.|+++|+++
T Consensus 18 ~~~~e~~~~l~~F~~~~~~------~~~VIKiGG~~l~~-~~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~ 90 (398)
T PRK04531 18 ASAKEISQYLKRFSQLDAE------RFAVIKVGGAVLRD-DLEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEK 90 (398)
T ss_pred CChhhhHHHHHHHhCcCCC------cEEEEEEChHHhhc-CHHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCc
Confidence 5556677788888888888 99999999999985 5899999999999999999999999999999999999999
Q ss_pred cccCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccc
Q 010333 155 KYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATG 234 (513)
Q Consensus 155 ~~~~G~RvTd~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG 234 (513)
+|++|+|+||+++|+++..+.+++|..|++
T Consensus 91 ~~v~G~RVTd~~tl~vv~~~l~~vn~~lv~-------------------------------------------------- 120 (398)
T PRK04531 91 ETVNGLRVTSPEALAIVRKVFQRSNLDLVE-------------------------------------------------- 120 (398)
T ss_pred EEECCEecCCHHHHHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 999999999999999997777787754432
Q ss_pred eEEEecHHHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeeccccc-CCCCccccccCH-HHH
Q 010333 235 EVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTL-QEA 312 (513)
Q Consensus 235 ~Vr~Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gl-d~~g~lI~~Lt~-~Ea 312 (513)
.|+.+|++|.|||++|+|++++|+++|+|+|++|+++|.+|+|+||||+||++|+ +.+|++|++++. +++
T Consensus 121 --------~I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~g~~i~~i~~~~e~ 192 (398)
T PRK04531 121 --------AVESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDADGKLISSINLSTEY 192 (398)
T ss_pred --------HHHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCCCCCcccCCHHHHH
Confidence 1888999999999999999999999999999999999999999999999999997 468999999997 567
Q ss_pred HHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccc
Q 010333 313 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 392 (513)
Q Consensus 313 ~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~ 392 (513)
+.++..+. + +| |
T Consensus 193 ~~l~~~~~-----------------------------v------------------------tg-G-------------- 204 (398)
T PRK04531 193 DHLMQQPW-----------------------------I------------------------NG-G-------------- 204 (398)
T ss_pred HHHHhcCC-----------------------------C------------------------Cc-c--------------
Confidence 77653210 1 34 5
Q ss_pred hhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCCccccc----ccccChHhHHHhh
Q 010333 393 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRT----AKVTDLSGIKQII 466 (513)
Q Consensus 393 ~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ye~iR~----A~~~Dv~gI~~Li 466 (513)
|.+||++|..|++ +++++|+++.+.+++|+.||||++|.||+|.+.. .|+. ..+ |.+.+.+||
T Consensus 205 -------M~~KL~~a~~al~-~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~--~i~~~~~~~~~-d~~~l~~ll 271 (398)
T PRK04531 205 -------MKLKLEQIKELLD-RLPLESSVSITSPSDLAKELFTHKGSGTLVRRGE--RILRATDWDEL-DLERLNLLI 271 (398)
T ss_pred -------HHHHHHHHHHHHh-CCCcEEEEEecCCCHHHHHHccCCCCCeEEecCC--ceeeeCChhhc-CHHHHHHHH
Confidence 9999999999995 5678999999999999999999999999998865 2222 234 777777777
No 16
>PRK12352 putative carbamate kinase; Reviewed
Probab=100.00 E-value=9.7e-43 Score=356.92 Aligned_cols=259 Identities=17% Similarity=0.229 Sum_probs=221.0
Q ss_pred CeEEEEeCCccCCCC-----------ChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHH
Q 010333 100 GTFVVIISGEIVSSP-----------YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (513)
Q Consensus 100 kt~VIKlGGs~l~~~-----------~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L 168 (513)
|+||||+||+++.++ ++..+++||++|+++|+++|||||+||||+.+|.+++++++| +|+|+||.+
T Consensus 3 k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~-~g~rvt~~~-- 79 (316)
T PRK12352 3 ELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHER-EGLPLTPLA-- 79 (316)
T ss_pred cEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCccccc-CCCCCCCHH--
Confidence 799999999999763 258899999999999999999999999999999999999999 699999997
Q ss_pred HHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCc---ceeeEeeecCCcee-eeeecccc-----------ccccCccc
Q 010333 169 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSR---WHEVGVSVASGNFL-AAKRKGVV-----------DGVDYGAT 233 (513)
Q Consensus 169 ~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~---~~av~l~~~dGnfv-tA~p~Gvi-----------dGvD~g~t 233 (513)
+++.++.|.++++|++.|+ ..|.++|.... +.++++++.|+||+ .+||.|++ +++|++|+
T Consensus 80 ~~v~~~~g~i~~~i~~~L~-----~~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~ 154 (316)
T PRK12352 80 NCVADTQGGIGYLIQQALN-----NRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFV 154 (316)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEe
Confidence 6667889999999999987 46788883311 12577888999999 68999987 77899994
Q ss_pred ---ce-----------EEEecHHHHHHHhcCCceEEEc-----CCccCCCCceee----cChHHHHHHHHHHcCCCEEEE
Q 010333 234 ---GE-----------VKKVDVTRMRERLDGGCLVILS-----NLGYSSSGEVLN----CNTYEVATACALAIEADKLIC 290 (513)
Q Consensus 234 ---G~-----------Vr~Vd~~~I~~LLd~G~IPVIs-----pvg~s~tGei~n----ld~D~vAa~lA~aL~ADkLIf 290 (513)
|+ |++||.+.|+.||++|+|||++ |++++.+|+.+| +|+|.+|+.+|.+|+||||||
T Consensus 155 ~d~g~G~rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~ 234 (316)
T PRK12352 155 EDAGRGYRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVI 234 (316)
T ss_pred ecCCCCeEEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEE
Confidence 44 9999999999999999998888 998888877654 999999999999999999999
Q ss_pred eecccccC-----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccc
Q 010333 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (513)
Q Consensus 291 LTDv~gld-----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (513)
|||++|+. +++++|++++.+|+++++.++.
T Consensus 235 LTDV~GV~~d~~~~~~~li~~lt~~e~~~li~~g~--------------------------------------------- 269 (316)
T PRK12352 235 TTGVEKVCIHFGKPQQQALDRVDIATMTRYMQEGH--------------------------------------------- 269 (316)
T ss_pred EeCchhhccCCCCCCcccccccCHHHHHHHHhcCC---------------------------------------------
Confidence 99999873 3578999999999999975321
Q ss_pred cccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEec
Q 010333 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (513)
Q Consensus 366 ~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~ 445 (513)
+.+| | |.+||++|..||+.|+.||||++ +.. +.++|++. .||+|.+
T Consensus 270 -------i~~G-g---------------------M~pKl~aA~~al~~Gv~~v~I~~---~~~-i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 270 -------FPPG-S---------------------MLPKIIASLTFLEQGGKEVIITT---PEC-LPAALRGE-TGTHIIK 315 (316)
T ss_pred -------cCCC-C---------------------CHHHHHHHHHHHHhCCCeEEEcc---hHH-HHHHHcCC-CCeEEEe
Confidence 1124 4 99999999999999999999997 334 66888766 8999964
No 17
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=1.5e-42 Score=344.86 Aligned_cols=248 Identities=24% Similarity=0.345 Sum_probs=223.0
Q ss_pred EEEEeCCccCCCCC-hHHHHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHH-HhHH
Q 010333 102 FVVIISGEIVSSPY-LDPILKDIAFLH-HLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEA-AGGI 178 (513)
Q Consensus 102 ~VIKlGGs~l~~~~-l~~l~~dIA~L~-~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a-~G~l 178 (513)
+||||||+++++++ +.++++||++++ ..|.++|||||+|+|++++++++|++++|++|+|+|+++++++++.+ .|++
T Consensus 1 ~ViK~GGs~l~~~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~ 80 (252)
T cd04249 1 LVIKLGGALLETEAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTA 80 (252)
T ss_pred CEEEEChHHhcChhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcc
Confidence 59999999998876 889999999875 56889999999999999999999999999999999999999998655 5899
Q ss_pred HHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEcC
Q 010333 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN 258 (513)
Q Consensus 179 ~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIsp 258 (513)
|..+++. +.++|++ ++++++.|++|++++|.+ .|++|+|+|+++|.+.|+.+|+.|.|||++|
T Consensus 81 n~~lv~~---------l~~~Gv~----a~~l~~~~~~~~~~~~~~----~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~ 143 (252)
T cd04249 81 NKQLMAQ---------AIKAGLK----PVGLSLADGGMTAVTQLD----PELGAVGKATANDPSLLNDLLKAGFLPIISS 143 (252)
T ss_pred cHHHHHH---------HHhCCCC----ceeeeccCCCEEEEEEcC----CCCCcccceEEEcHHHHHHHHHCCCEEEECC
Confidence 8888876 4578887 789999999999999975 5899999999999999999999999999999
Q ss_pred CccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhccc
Q 010333 259 LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEED 337 (513)
Q Consensus 259 vg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~ 337 (513)
++++++|+++|+|+|++|+++|.+|+|| +||+||++|++ .++++|++++.+|+++++..+.
T Consensus 144 ~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~g~----------------- 205 (252)
T cd04249 144 IGADDQGQLMNVNADQAATAIAQLLNAD-LVLLSDVSGVLDADKQLISELNAKQAAELIEQGV----------------- 205 (252)
T ss_pred CEECCCCCEeeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCCCcCccccCHHHHHHHHhcCC-----------------
Confidence 9999999999999999999999999999 78999999985 5789999999999888764211
Q ss_pred ccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCE
Q 010333 338 ITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQR 417 (513)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~R 417 (513)
+ +| | |.+|+++|..+++.|+.+
T Consensus 206 ------------~------------------------~g-G---------------------m~~kl~~a~~~~~~~~~~ 227 (252)
T cd04249 206 ------------I------------------------TD-G---------------------MIVKVNAALDAAQSLRRG 227 (252)
T ss_pred ------------C------------------------cC-C---------------------cHHHHHHHHHHHHhCCCe
Confidence 1 34 5 999999999999999989
Q ss_pred EEEecCCCchhhHHHHHcCCCCeeEE
Q 010333 418 VHLLDGTIGGVLLLELFKRDGMGTMV 443 (513)
Q Consensus 418 vhIv~g~~~gaLL~ELft~dG~GT~I 443 (513)
+||++++.++. |.++|++++.||+|
T Consensus 228 v~I~~g~~~~~-l~~~l~g~~~GT~I 252 (252)
T cd04249 228 IDIASWQYPEQ-LTALLAGEPVGTKI 252 (252)
T ss_pred EEEEeCCCccH-HHHHHcCCCCCcCC
Confidence 99999998885 78999999999986
No 18
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=3.8e-42 Score=343.75 Aligned_cols=244 Identities=34% Similarity=0.471 Sum_probs=216.7
Q ss_pred EEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccC---C--ccCCCHHHHHHHHHHHh
Q 010333 102 FVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG---R--YRITDSESLAAAMEAAG 176 (513)
Q Consensus 102 ~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~---G--~RvTd~~~L~~a~~a~G 176 (513)
+||||||+++++ ++++++||++| |.++|||||||||+++.++++|++++|++ | .|+|++++|+.++.+++
T Consensus 1 ~VIKlGGs~l~~--~~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~~ 75 (257)
T cd04251 1 IVVKIGGSVVSD--LDKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVMG 75 (257)
T ss_pred CEEEEChHHhhC--hHHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHHH
Confidence 599999999985 67899999998 99999999999999999999999999985 7 49999999999987779
Q ss_pred HHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeec--------cccccccCcccceEEEecHHHHHHHh
Q 010333 177 GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRK--------GVVDGVDYGATGEVKKVDVTRMRERL 248 (513)
Q Consensus 177 ~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~--------GvidGvD~g~tG~Vr~Vd~~~I~~LL 248 (513)
++|..|++. |+++|++ ++++++.+++++++++. |....+|++|+|+|+.+|.+.|+.+|
T Consensus 76 ~ln~~iv~~---------L~~~Gi~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll 142 (257)
T cd04251 76 LINKKIVAR---------LHSLGVK----AVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALL 142 (257)
T ss_pred HHHHHHHHH---------HHhCCCC----ceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHH
Confidence 999999986 5677877 78999999999998875 32234688999999999999999999
Q ss_pred cCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccCCCCccccccCHHHHHHHHHHhhhhhhHHHh
Q 010333 249 DGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQSEIAAN 328 (513)
Q Consensus 249 d~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~ 328 (513)
++|.|||++|++++.+|+++|+|+|++|+++|.+|+||+|+|+||++|++.++++|++++.+|+++++..
T Consensus 143 ~~g~vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~~~~i~~i~~~e~~~l~~~---------- 212 (257)
T cd04251 143 DAGYLPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLDGRVIERITVSDAESLLEK---------- 212 (257)
T ss_pred hCCCeEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeCCcccCccCHHHHHHHHhh----------
Confidence 9999999999999999999999999999999999999999999999999777999999999988887621
Q ss_pred HHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHH
Q 010333 329 YVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAA 408 (513)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~ 408 (513)
+ +| | |.+||++|.
T Consensus 213 ---------------------~------------------------~g-g---------------------m~~Kl~aa~ 225 (257)
T cd04251 213 ---------------------A------------------------GG-G---------------------MKRKLLAAA 225 (257)
T ss_pred ---------------------C------------------------CC-c---------------------hHHHHHHHH
Confidence 0 34 5 999999999
Q ss_pred HHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEE
Q 010333 409 FVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (513)
Q Consensus 409 ~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I 443 (513)
.|+++|++++||+|++.++.| .+++. |.||.|
T Consensus 226 ~a~~~gv~~v~i~~g~~~~~l-~~~l~--g~gT~i 257 (257)
T cd04251 226 EAVEGGVREVVIGDARADSPI-SSALN--GGGTVI 257 (257)
T ss_pred HHHHcCCCEEEEecCCCccHH-HHHHc--CCCcCC
Confidence 999999999999999999885 44443 568875
No 19
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=100.00 E-value=1.9e-40 Score=325.45 Aligned_cols=200 Identities=32% Similarity=0.503 Sum_probs=183.4
Q ss_pred eEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHH-HHHhHHH
Q 010333 101 TFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM-EAAGGIR 179 (513)
Q Consensus 101 t~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~-~a~G~l~ 179 (513)
|+||||||++++++ +.++++||++|+..|.++|||||+++++++++++++++.++++|.|+|++++++.++ +.+|++|
T Consensus 1 ~~ViK~GGs~l~~~-~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~ 79 (231)
T TIGR00761 1 TIVIKIGGAAISDL-LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVN 79 (231)
T ss_pred CEEEEEChHHHhcc-HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchH
Confidence 68999999999987 999999999999999999999999999999999999999999999999999999874 4477999
Q ss_pred HHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEcCC
Q 010333 180 MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL 259 (513)
Q Consensus 180 ~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIspv 259 (513)
..+++. |+++|++ ++++++.|++++++++. ++.|++|+|+++.+|.+.|+++|++|+|||++|+
T Consensus 80 ~~i~~~---------L~~~G~~----a~~l~~~~~~~it~~~~---~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~ 143 (231)
T TIGR00761 80 KELVAL---------LNKHGIN----AIGLTGGDGQLFTARSL---DKEDLGYVGEIKKVNKALLEALLKAGYIPVISSL 143 (231)
T ss_pred HHHHHH---------HHhCCCC----cccccCCCCCEEEEEEC---CCccCCcccceEEEcHHHHHHHHHCCCeEEECCC
Confidence 999886 6778887 78999999999999975 4578999999999999999999999999999999
Q ss_pred ccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-CCC-ccccccCHHHHHHHHH
Q 010333 260 GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESG-HLIRFLTLQEADSLIR 317 (513)
Q Consensus 260 g~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-~~g-~lI~~Lt~~Ea~~ll~ 317 (513)
+++.+|+++|+|+|.+|+.+|.+|+||+|+|+||++|++ .++ ++|++++.+|+++++.
T Consensus 144 ~~~~~g~~~~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~~~i~~i~~~e~~~l~~ 203 (231)
T TIGR00761 144 ALTAEGQALNVNADTAAGALAAALGAEKLVLLTDVPGILNGDGQSLISEIPLEEIEQLIE 203 (231)
T ss_pred ccCCCCcEEEeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCCCeeccccCHHHHHHHHH
Confidence 999999999999999999999999999999999999974 444 5999999999888763
No 20
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=3.2e-35 Score=291.78 Aligned_cols=238 Identities=18% Similarity=0.259 Sum_probs=196.2
Q ss_pred eEEEEeCCccCCCCC---------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHH
Q 010333 101 TFVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (513)
Q Consensus 101 t~VIKlGGs~l~~~~---------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a 171 (513)
.+|||+||+++++++ +++++++|+.++ |+++||||||+++++..++++|+++ |.|+|+++.|..+
T Consensus 1 ~iVIKiGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~~~g~~~----g~~~~~~~~l~~~ 74 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEYGLPD----GDGSFSAEGVAET 74 (252)
T ss_pred CEEEEEeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHHHHhCCCc----CCCchhhhhHHHH
Confidence 479999999998753 345566666555 9999999999999999999999986 7899999999998
Q ss_pred HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCC
Q 010333 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (513)
Q Consensus 172 ~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G 251 (513)
..+++++|..++++ |.++|++ +.++++.+ ++.+. +|+++.++.+.|+++|++|
T Consensus 75 ~~~~~~ln~~~~~~---------l~~~g~~----a~~l~~~~--~~~~~------------~g~~~~~~~~~l~~ll~~g 127 (252)
T cd04241 75 HEAMLELNSIVVDA---------LLEAGVP----AVSVPPSS--FFVTE------------NGRIVSFDLEVIKELLDRG 127 (252)
T ss_pred HHHHHHHHHHHHHH---------HHHCCCC----eEEEChHH--eEEec------------CCeeeeecHHHHHHHHhCC
Confidence 77888999887775 6678877 56666554 23222 4788999999999999999
Q ss_pred ceEEEcC-CccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-C---CCccccccCHHHHHHHHHHhhhhhhHH
Q 010333 252 CLVILSN-LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-E---SGHLIRFLTLQEADSLIRQRVKQSEIA 326 (513)
Q Consensus 252 ~IPVIsp-vg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-~---~g~lI~~Lt~~Ea~~ll~~~~~~~~i~ 326 (513)
+|||+++ .+++.+|+++|+|+|++|+.+|.+|+||+|+|+||++|++ . ++++|++++.+++++++....
T Consensus 128 ~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P~~~~~i~~i~~~~~~~~~~~~~------ 201 (252)
T cd04241 128 FVPVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPPPDAKLIPEIDVGSLEDILAALG------ 201 (252)
T ss_pred CEEEEcCCeEecCCCCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCeEcceeCccchHHHHHhcC------
Confidence 9999987 4678888999999999999999999999999999999984 2 599999999988888763200
Q ss_pred HhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHH
Q 010333 327 ANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAA 406 (513)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~A 406 (513)
.++...+| | |.+||++
T Consensus 202 ------------------------------------------~~~~~~tG-G---------------------m~~Kl~a 217 (252)
T cd04241 202 ------------------------------------------SAGTDVTG-G---------------------MAGKIEE 217 (252)
T ss_pred ------------------------------------------cCCccccC-C---------------------HHHHHHH
Confidence 00111245 5 9999999
Q ss_pred HHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEE
Q 010333 407 AAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (513)
Q Consensus 407 A~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I 443 (513)
|..|+++|++ +||+|+..++. |.++++++.+||+|
T Consensus 218 a~~a~~~Gv~-v~I~~g~~~~~-l~~~l~g~~~GT~i 252 (252)
T cd04241 218 LLELARRGIE-VYIFNGDKPEN-LYRALLGNFIGTRI 252 (252)
T ss_pred HHHHHhcCCe-EEEEeCCCHHH-HHHHHcCCCCceEC
Confidence 9999999998 99999998877 67888888899986
No 21
>PRK12353 putative amino acid kinase; Reviewed
Probab=100.00 E-value=1.3e-33 Score=289.94 Aligned_cols=262 Identities=18% Similarity=0.216 Sum_probs=201.4
Q ss_pred cCCeEEEEeCCccCCCCC---------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHH
Q 010333 98 RGGTFVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (513)
Q Consensus 98 rgkt~VIKlGGs~l~~~~---------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L 168 (513)
+.|+|||||||++|++++ +..+++||+.|+++|+++||||||+||++..+...+..++|+. ++++....
T Consensus 1 ~~~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~--~~~~~~~~ 78 (314)
T PRK12353 1 MMKKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKN--KVPAMPLD 78 (314)
T ss_pred CCcEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCC--CCCCchhH
Confidence 468999999999999875 6899999999999999999999999998887766665554433 67776555
Q ss_pred HHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcce----eeEeeecCCce-eeeeecccc------------ccccCc
Q 010333 169 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNF-LAAKRKGVV------------DGVDYG 231 (513)
Q Consensus 169 ~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~----av~l~~~dGnf-vtA~p~Gvi------------dGvD~g 231 (513)
.++.+.+|.+++.+++.|+ ..|..+|+..++. .+-++..|-.| ..++|.|++ +|.||.
T Consensus 79 ~~~a~~qg~l~~~l~~~~~-----~~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~ 153 (314)
T PRK12353 79 VCGAMSQGYIGYHLQNALR-----NELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFK 153 (314)
T ss_pred HHHHHHhHHHHHHHHHHHH-----HHHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceee
Confidence 5557788999998998887 4688888754432 22223333336 778899988 788888
Q ss_pred c-cce-EEE----------ecHHHHHHHhcCCceEEEcCCccCCC----Ccee----ecChHHHHHHHHHHcCCCEEEEe
Q 010333 232 A-TGE-VKK----------VDVTRMRERLDGGCLVILSNLGYSSS----GEVL----NCNTYEVATACALAIEADKLICI 291 (513)
Q Consensus 232 ~-tG~-Vr~----------Vd~~~I~~LLd~G~IPVIspvg~s~t----Gei~----nld~D~vAa~lA~aL~ADkLIfL 291 (513)
+ +|+ .++ +|.+.|+.+|++|+|||+++.+..|. +.++ |+|+|++|+++|.+|+||+|||+
T Consensus 154 ~~~~~~~r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~l 233 (314)
T PRK12353 154 EDAGRGYRRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIIL 233 (314)
T ss_pred ecCCceeEeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEE
Confidence 7 554 555 68999999999999999997754432 3334 59999999999999999999999
Q ss_pred ecccccC-----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCccccccccc
Q 010333 292 IDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIAT 366 (513)
Q Consensus 292 TDv~gld-----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (513)
||++|++ +++++|++++.+++++++..+.
T Consensus 234 TdvdGVy~~~~~~~a~~i~~i~~~e~~~~~~~~~---------------------------------------------- 267 (314)
T PRK12353 234 TAVDKVYINFGKPNQKKLDEVTVSEAEKYIEEGQ---------------------------------------------- 267 (314)
T ss_pred eCCccccCCCCCCCCeECcCcCHHHHHHHHhcCC----------------------------------------------
Confidence 9999974 3589999999888877763211
Q ss_pred ccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHH-HcCCCEEEEecCCCchhhHHHHHcCCCCeeEEec
Q 010333 367 FNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVC-RRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (513)
Q Consensus 367 ~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~-~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~ 445 (513)
+++| | |.+||++|..++ +.+...++|++ ++. +.+++.++ .||.|.+
T Consensus 268 ------~~tG-G---------------------M~~Kl~aA~~a~~~~~g~~v~I~~---~~~-i~~~l~g~-~GT~i~~ 314 (314)
T PRK12353 268 ------FAPG-S---------------------MLPKVEAAISFVESRPGRKAIITS---LEK-AKEALEGK-AGTVIVK 314 (314)
T ss_pred ------cCCC-C---------------------cHHHHHHHHHHHHHcCCCEEEECC---chH-HHHHhCCC-CCeEecC
Confidence 1245 5 999999999999 44444589997 344 45666655 8999853
No 22
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=100.00 E-value=2.6e-33 Score=275.04 Aligned_cols=237 Identities=30% Similarity=0.399 Sum_probs=205.0
Q ss_pred EEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHhHHHHH
Q 010333 103 VVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMM 181 (513)
Q Consensus 103 VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G~l~~~ 181 (513)
||||||+++++++ +++++++|+.|++.|+++||||||+++++..+.+++...++..+.|+|+.+.+.++..+.+.++..
T Consensus 1 ViKiGGs~l~~~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
T cd02115 1 VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLL 80 (248)
T ss_pred CEeeCccccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 7999999998854 899999999999999999999999999999999999888888889999998888877677888877
Q ss_pred HHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEcCCcc
Q 010333 182 IEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGY 261 (513)
Q Consensus 182 L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIspvg~ 261 (513)
+++. |+++|++ +..+.+.+..+.+. +++++|++..++.+.|+++|+.|.|||+++++.
T Consensus 81 ~~~~---------l~~~gi~----a~~~~~~~~~~~~~---------~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~ 138 (248)
T cd02115 81 IAAA---------LEQHGIK----AVPLDLTQAGFASP---------NQGHVGKITKVSTDRLKSLLENGILPILSGFGG 138 (248)
T ss_pred HHHH---------HHhCCCC----eEEEchHHcCeEeC---------CCCCcccceeeCHHHHHHHHhCCcEEEecCeEe
Confidence 7765 6778887 56666665444432 578899999999999999999999999999876
Q ss_pred CC---CCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhhhhHHHhHHh
Q 010333 262 SS---SGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVK 331 (513)
Q Consensus 262 s~---tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~ 331 (513)
.+ .+++.++++|.+|+.+|.+|+||+|+|+|||+|++ +++++|++++.+|++++..
T Consensus 139 ~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~-------------- 204 (248)
T cd02115 139 TDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAY-------------- 204 (248)
T ss_pred ccCCceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHH--------------
Confidence 65 78889999999999999999999999999999973 2489999999988888752
Q ss_pred hhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHH
Q 010333 332 AVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVC 411 (513)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~ 411 (513)
.| + |..|++++..++
T Consensus 205 -------------------------------------------~g-~---------------------~~~k~~a~~~~~ 219 (248)
T cd02115 205 -------------------------------------------AG-A---------------------MVLKPKAADPAA 219 (248)
T ss_pred -------------------------------------------cC-C---------------------CccCHHHHHHHH
Confidence 13 3 677899999999
Q ss_pred HcCCCEEEEecCCCchhhHHHHHcCCCCeeEE
Q 010333 412 RRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (513)
Q Consensus 412 ~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I 443 (513)
+.|+ +++|+++..++.| ++|++++.||+|
T Consensus 220 ~~~~-~v~I~~~~~~~~l--~~~~~~~~GT~I 248 (248)
T cd02115 220 RAGI-PVRIANTENPGAL--ALFTPDGGGTLI 248 (248)
T ss_pred HcCC-cEEEEeCCCcccc--cccCCCCCCCCC
Confidence 9996 5999999999986 999999999986
No 23
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.97 E-value=1.3e-30 Score=255.18 Aligned_cols=192 Identities=33% Similarity=0.443 Sum_probs=165.2
Q ss_pred CeEEEEeCCccCCCC--ChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHH-HHHHh
Q 010333 100 GTFVVIISGEIVSSP--YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAG 176 (513)
Q Consensus 100 kt~VIKlGGs~l~~~--~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a-~~a~G 176 (513)
|++||||||++++++ .+.+++++|+.|++.|+++|||||++++++.+++++++++++.++.|+|+...+..+ +.+++
T Consensus 1 k~~ViK~GGs~l~~~~~~~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 80 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKDEELRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPKFVDGSRVTDIETGLIITMAAAA 80 (242)
T ss_dssp SEEEEEE-HHGHSSHSHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTSEETHHCHBHHHHHHHHHHHHHH
T ss_pred CeEEEEECchhhCCchHHHHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCcccchhhhhhhhhhhHHHHHHHhh
Confidence 789999999999997 589999999999999999999999999999999999999999999999999988876 56677
Q ss_pred HHHH-----HHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCC
Q 010333 177 GIRM-----MIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (513)
Q Consensus 177 ~l~~-----~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G 251 (513)
++|. .+.+. +..++.. .+++.+.++++....+.. +.++.+.|+.+|++|
T Consensus 81 ~l~~~~~~~~i~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~l~~~ 134 (242)
T PF00696_consen 81 ELNRDALLDEIVSA---------GERLGAH----AVGLSLSDGGISAAKRDA-------------REVDKEAIRELLEQG 134 (242)
T ss_dssp HHHHHHHHHHHHHH---------HHHCTHH----EEEHHHTGGTEEEEEEES-------------SEEHHHHHHHHHHTT
T ss_pred ccccchhHHHHHHh---------hhhhhHH----HHhhhhhcccchhhhhhh-------------hhhHHHHHHHHHHCC
Confidence 8777 55554 5555543 567777776666654310 168899999999999
Q ss_pred ceEEEcCCc-cCCCCce---eecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHH
Q 010333 252 CLVILSNLG-YSSSGEV---LNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (513)
Q Consensus 252 ~IPVIspvg-~s~tGei---~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~ 317 (513)
.|||++|.+ ++++|++ +++++|++|+.+|.+|+|++|+|+||++|+. ++++++++++.+|++++..
T Consensus 135 ~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~ 211 (242)
T PF00696_consen 135 IIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELAS 211 (242)
T ss_dssp SEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHH
T ss_pred CEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHh
Confidence 999999976 8899998 9999999999999999999999999999873 4789999999999999874
No 24
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.97 E-value=2.7e-30 Score=264.04 Aligned_cols=258 Identities=21% Similarity=0.234 Sum_probs=198.3
Q ss_pred CCeEEEEeCCccCCCCC-----------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHH
Q 010333 99 GGTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSES 167 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-----------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~ 167 (513)
+|++||+|||++|..+. .+..+++|+.|.+.|+++|||||+|||+..++.+....... + +++..
T Consensus 2 ~~~ivvalgGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~--~---~~~~p 76 (313)
T PRK12454 2 KKRIVIALGGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDV--G---IPPFP 76 (313)
T ss_pred CceEEEEeChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhccc--C---CCCCc
Confidence 36999999999997632 45679999999999999999999999999887664332210 0 34556
Q ss_pred HHHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCccee----eEeeecCCceee-eeeccccc------------c--
Q 010333 168 LAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHE----VGVSVASGNFLA-AKRKGVVD------------G-- 227 (513)
Q Consensus 168 L~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~a----v~l~~~dGnfvt-A~p~Gvid------------G-- 227 (513)
|+.+ .++.|.+.+.|+.+|. +.|.++|++.++.. +.+...|..|-. .||.|..- |
T Consensus 77 ld~~~a~sqG~igy~l~~al~-----~~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~ 151 (313)
T PRK12454 77 LDVAGAMTQGWIGYMIQQALR-----NELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWI 151 (313)
T ss_pred cchhhhhhhHHHHHHHHHHHH-----HHHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCE
Confidence 7775 6799999999999986 58999998876643 455666666776 46777531 1
Q ss_pred --cc--Ccccce------EEEecHHHHHHHhcCCceEEEcCCc----cCCCCceeec----ChHHHHHHHHHHcCCCEEE
Q 010333 228 --VD--YGATGE------VKKVDVTRMRERLDGGCLVILSNLG----YSSSGEVLNC----NTYEVATACALAIEADKLI 289 (513)
Q Consensus 228 --vD--~g~tG~------Vr~Vd~~~I~~LLd~G~IPVIspvg----~s~tGei~nl----d~D~vAa~lA~aL~ADkLI 289 (513)
.| -+|.-. ++.+|.+.|+.||++|.|||+++-+ ++.+|+++|+ |+|.+|+.+|.+|+||+||
T Consensus 152 ~~~d~g~g~RrvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LI 231 (313)
T PRK12454 152 VKEDAGRGWRRVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFI 231 (313)
T ss_pred EEEcCCCceEEEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEE
Confidence 11 122222 2678899999999999999999544 7778888874 7899999999999999999
Q ss_pred EeecccccC-----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCccccccc
Q 010333 290 CIIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRI 364 (513)
Q Consensus 290 fLTDv~gld-----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (513)
|||||+|++ +++++|++++.+|+++++.++.
T Consensus 232 iLTdVdGVy~~~~~p~~~~i~~It~~e~~~~i~~g~-------------------------------------------- 267 (313)
T PRK12454 232 ILTDVEKVYLNYGKPDQKPLDKVTVEEAKKYYEEGH-------------------------------------------- 267 (313)
T ss_pred EEeCCceeeCCCCCCCCeEccccCHHHHHHHHhcCC--------------------------------------------
Confidence 999999873 5689999999999988874311
Q ss_pred ccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 365 ATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 365 ~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
|.+| | |.+||++|..+++.|+.++||.+. .. +.+++.++ .||.|.
T Consensus 268 --------~~~G-g---------------------M~pKv~AA~~~v~~gg~~a~I~~~---~~-i~~aL~G~-~GT~I~ 312 (313)
T PRK12454 268 --------FKAG-S---------------------MGPKILAAIRFVENGGKRAIIASL---EK-AVEALEGK-TGTRII 312 (313)
T ss_pred --------cCCC-C---------------------hHHHHHHHHHHHHcCCCeEEECch---HH-HHHHHCCC-CCeEeC
Confidence 2245 4 999999999999999999999863 23 55666554 899995
Q ss_pred c
Q 010333 445 S 445 (513)
Q Consensus 445 ~ 445 (513)
+
T Consensus 313 ~ 313 (313)
T PRK12454 313 P 313 (313)
T ss_pred C
Confidence 3
No 25
>PRK12686 carbamate kinase; Reviewed
Probab=99.97 E-value=4.7e-30 Score=262.48 Aligned_cols=255 Identities=18% Similarity=0.205 Sum_probs=194.2
Q ss_pred CCeEEEEeCCccCCCCC---------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH-HcCCCccccCCccCCCHHHH
Q 010333 99 GGTFVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLS-ERGHEAKYLGRYRITDSESL 168 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~---------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~-~~Gi~~~~~~G~RvTd~~~L 168 (513)
+|++|||+||+++.++. .+..+++|+.|...|+++|||||+||||+..+. ..+..+.+ +++..|
T Consensus 2 ~~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~------~~~~pl 75 (312)
T PRK12686 2 KEKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNK------VPAMPL 75 (312)
T ss_pred CCEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccC------CCCCCh
Confidence 57999999999998754 378999999999999999999999999995444 44444332 455678
Q ss_pred HHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCccee----eEeeecCCceee-eeecccc------------c----
Q 010333 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHE----VGVSVASGNFLA-AKRKGVV------------D---- 226 (513)
Q Consensus 169 ~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~a----v~l~~~dGnfvt-A~p~Gvi------------d---- 226 (513)
+++ .++.|.+.++|+++|. +.|.++++..|+.. +-++..|..|.. .+|.|+. .
T Consensus 76 ~~~~a~sqg~iGy~~~q~l~-----~~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~ 150 (312)
T PRK12686 76 DTCVAMSQGMIGYWLQNALN-----NELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTF 150 (312)
T ss_pred hhhhhhccchhhHHHHHHHH-----HHHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcc
Confidence 876 6799999999999986 57888887766543 345555556666 4566642 1
Q ss_pred cccC--cccceEEE------ecHHHHHHHhcCCceEEEc-----CCccCCCCcee----ecChHHHHHHHHHHcCCCEEE
Q 010333 227 GVDY--GATGEVKK------VDVTRMRERLDGGCLVILS-----NLGYSSSGEVL----NCNTYEVATACALAIEADKLI 289 (513)
Q Consensus 227 GvD~--g~tG~Vr~------Vd~~~I~~LLd~G~IPVIs-----pvg~s~tGei~----nld~D~vAa~lA~aL~ADkLI 289 (513)
..|. ||.+.|.. ++.+.|+.||++|+|||.+ |+..+ ++.++ ++|+|.+|+.+|.+|+||+||
T Consensus 151 ~~d~~~G~rrvV~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~-~~~~~gv~avid~D~~Aa~LA~~L~Ad~LI 229 (312)
T PRK12686 151 KEDAGRGYRRVVPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRD-DNTLKGVEAVIDKDFASEKLAEQIDADLLI 229 (312)
T ss_pred cccCCCCeEEeeCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEec-CCcEEeeecccCccHHHHHHHHHcCCCEEE
Confidence 2343 78888866 9999999999999999876 44433 34344 679999999999999999999
Q ss_pred EeecccccC-----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCccccccc
Q 010333 290 CIIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRI 364 (513)
Q Consensus 290 fLTDv~gld-----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (513)
||||++|++ +++++|++++.+|+++++.++.
T Consensus 230 iLTDVdGVy~~~~~p~ak~I~~I~~~e~~~li~~g~-------------------------------------------- 265 (312)
T PRK12686 230 ILTGVENVFINFNKPNQQKLDDITVAEAKQYIAEGQ-------------------------------------------- 265 (312)
T ss_pred EEeCchhhccCCCCCCCeECCccCHHHHHHHhhCCC--------------------------------------------
Confidence 999999874 4579999999999888874311
Q ss_pred ccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCC-CEEEEecCCCchhhHHHHHcCCCCeeEE
Q 010333 365 ATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGV-QRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (513)
Q Consensus 365 ~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV-~RvhIv~g~~~gaLL~ELft~dG~GT~I 443 (513)
+.+| | |.+|++||..+.+.|+ .+++|.+. .. +.+++.+. .||.|
T Consensus 266 --------~~tG-G---------------------M~pKveAA~~av~~g~g~~viI~~~---~~-i~~aL~G~-~GT~I 310 (312)
T PRK12686 266 --------FAPG-S---------------------MLPKVEAAIDFVESGEGKKAIITSL---EQ-AKEALAGN-AGTHI 310 (312)
T ss_pred --------ccCC-C---------------------cHHHHHHHHHHHHhCCCCEEEEeCc---hH-HHHHhCCC-CCeEE
Confidence 2256 5 9999999999998765 45666762 33 44656544 89998
Q ss_pred e
Q 010333 444 A 444 (513)
Q Consensus 444 ~ 444 (513)
.
T Consensus 311 ~ 311 (312)
T PRK12686 311 T 311 (312)
T ss_pred e
Confidence 5
No 26
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.97 E-value=7.9e-30 Score=260.77 Aligned_cols=238 Identities=21% Similarity=0.299 Sum_probs=192.2
Q ss_pred CeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHH
Q 010333 100 GTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~ 172 (513)
+++|||+|+++++++. +..++++|+.|+..|++||||.+| +|...+..+|++.+ .++-...+++
T Consensus 7 ~riVvKiGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSG--AiaaG~~~Lg~~~r------p~~l~~kQA~- 77 (369)
T COG0263 7 RRIVVKIGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSG--AIAAGRTRLGLPKR------PKTLAEKQAA- 77 (369)
T ss_pred eEEEEEECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccc--hhhhChhhcCCCCC------CcchHHHHHH-
Confidence 7999999999999874 689999999999999999999999 57778889998863 4554444443
Q ss_pred HHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecH-HHHHHHhcCC
Q 010333 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV-TRMRERLDGG 251 (513)
Q Consensus 173 ~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~-~~I~~LLd~G 251 (513)
+++||.+ |+..|+ +.|.+||+.. .++ ++|.. ||. -+.|+.|. ++|+.||+.|
T Consensus 78 AAVGQ~~--Lm~~y~-----~~f~~~g~~v--~Qi--------LLTr~--------D~~--~r~ry~Nar~Tl~~Ll~~g 130 (369)
T COG0263 78 AAVGQVR--LMQLYE-----ELFARYGIKV--GQI--------LLTRD--------DFS--DRRRYLNARNTLSALLELG 130 (369)
T ss_pred HHhCHHH--HHHHHH-----HHHHhcCCee--eEE--------Eeehh--------hhh--hHHHHHHHHHHHHHHHHCC
Confidence 6899987 888887 5899999861 222 33332 332 23356675 9999999999
Q ss_pred ceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCH--HHHHHHHHHhhhh
Q 010333 252 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEADSLIRQRVKQ 322 (513)
Q Consensus 252 ~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~--~Ea~~ll~~~~~~ 322 (513)
.|||||++....+-|+.+.|||.+|+.+|...+||.|++|||+||++ ||+++|++++. .|++.+.
T Consensus 131 vVPIINENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~a------ 204 (369)
T COG0263 131 VVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMA------ 204 (369)
T ss_pred ceeeecCCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHh------
Confidence 99999998777778999999999999999999999999999999983 56788887752 1232221
Q ss_pred hhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHH
Q 010333 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 402 (513)
Q Consensus 323 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~ 402 (513)
+ +.++.+||| | |.+
T Consensus 205 ------------g--------------------------------gsgs~~GTG-G---------------------M~T 218 (369)
T COG0263 205 ------------G--------------------------------GSGSELGTG-G---------------------MRT 218 (369)
T ss_pred ------------c--------------------------------CCCCCCCcc-c---------------------HHH
Confidence 0 246778888 7 999
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCC
Q 010333 403 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (513)
Q Consensus 403 KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ 447 (513)
||.||..|+++|++ +.|.+|..+.. +.++..+...||.|.+..
T Consensus 219 Kl~AA~iA~~aG~~-~iI~~g~~~~~-i~~~~~~~~~GT~F~~~~ 261 (369)
T COG0263 219 KLEAAKIATRAGVP-VIIASGSKPDV-ILDALEGEAVGTLFEPQA 261 (369)
T ss_pred HHHHHHHHHHcCCc-EEEecCCCcch-HHHHHhCCCCccEEecCC
Confidence 99999999999998 89999999986 567778889999999665
No 27
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.97 E-value=5e-29 Score=255.38 Aligned_cols=255 Identities=20% Similarity=0.213 Sum_probs=185.0
Q ss_pred CeEEEEeCCccCCCC--C---------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHH
Q 010333 100 GTFVVIISGEIVSSP--Y---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (513)
Q Consensus 100 kt~VIKlGGs~l~~~--~---------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L 168 (513)
|++|||+||++|.++ . ++.++++|+.|.+.|++|||||||+||+....... +.. ...++...|
T Consensus 1 ~riViklGgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~--~~~----~~~~~~~p~ 74 (310)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQN--QAA----DSEVPAMPL 74 (310)
T ss_pred CeEEEEECHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhcc--ccc----cccCCCCcc
Confidence 689999999999842 1 57799999999999999999999999998655432 211 012333456
Q ss_pred HHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcce----eeEeeecCCceeee-eecccc-c-----------c---
Q 010333 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLAA-KRKGVV-D-----------G--- 227 (513)
Q Consensus 169 ~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~----av~l~~~dGnfvtA-~p~Gvi-d-----------G--- 227 (513)
+++ .+.+|.+.+.++.+|+ +.|.++|++.++. ++.++..|..|-.. ||.|.. + |
T Consensus 75 ~~~~A~~qg~lg~~~~~~l~-----~~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~ 149 (310)
T TIGR00746 75 DVLGAMSQGMIGYMLQQALN-----NELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIV 149 (310)
T ss_pred hHHHHhhHHHHHHHHHHHHH-----HHHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeE
Confidence 765 5688888888888775 4677888776543 34455555445442 344321 0 0
Q ss_pred -c--cCcccce------EEEecHHHHHHHhcCCceEEEcCCccCC----CCcee----ecChHHHHHHHHHHcCCCEEEE
Q 010333 228 -V--DYGATGE------VKKVDVTRMRERLDGGCLVILSNLGYSS----SGEVL----NCNTYEVATACALAIEADKLIC 290 (513)
Q Consensus 228 -v--D~g~tG~------Vr~Vd~~~I~~LLd~G~IPVIspvg~s~----tGei~----nld~D~vAa~lA~aL~ADkLIf 290 (513)
. .++|.-. ++.++.++|+.||++|.|||.++-|..| +|+++ |+|+|++|+.+|.+|+||+|||
T Consensus 150 ~~d~~~~~rrvv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIi 229 (310)
T TIGR00746 150 KEDAGRGWRRVVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVI 229 (310)
T ss_pred eecCCCcceEeecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEE
Confidence 1 1222211 1368899999999999876666544433 34443 8999999999999999999999
Q ss_pred eecccccC-----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccc
Q 010333 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (513)
Q Consensus 291 LTDv~gld-----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (513)
|||++|++ +++++|++++.+|+++++..+
T Consensus 230 LTDVdGVy~~~~~p~a~~i~~it~~e~~~~~~~g---------------------------------------------- 263 (310)
T TIGR00746 230 LTDVDAVYINYGKPDEKALREVTVEELEDYYKAG---------------------------------------------- 263 (310)
T ss_pred EeCCCceeCCCCCCCCcCCcCcCHHHHHHHHhcC----------------------------------------------
Confidence 99999874 468999999998888876321
Q ss_pred cccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 366 ~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
.+++| | |.+|++||..+|+.|+.++||++ .+. +.+++.++ .||.|.
T Consensus 264 ------~~~tG-g---------------------M~~Kl~AA~~~~~~g~~~v~I~~---~~~-i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 264 ------HFAAG-S---------------------MGPKVEAAIEFVESGGKRAIITS---LEN-AVEALEGK-AGTRVT 309 (310)
T ss_pred ------CcCCC-C---------------------cHHHHHHHHHHHHhCCCeEEEec---hHH-HHHHHCCC-CCcEEe
Confidence 12355 5 99999999999999988999998 334 66777777 899985
No 28
>PRK09411 carbamate kinase; Reviewed
Probab=99.96 E-value=6e-28 Score=244.65 Aligned_cols=245 Identities=22% Similarity=0.196 Sum_probs=189.7
Q ss_pred CeEEEEeCCccCCCCC-----------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHH
Q 010333 100 GTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-----------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L 168 (513)
+++||.|||++|..+. .+..++.|+.|.+. +++||+||+|||+..++.+..... -.++..|
T Consensus 2 ~~iVvAlGGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~~-------~~~~~pl 73 (297)
T PRK09411 2 KTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAWK-------EVEPYPL 73 (297)
T ss_pred CeEEEEcCchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhhc-------CCCCCCc
Confidence 6899999999997632 35678899998877 999999999999998776543221 1255677
Q ss_pred HHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcce----eeEeeecCCceee-eeecccc------------cc---
Q 010333 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLA-AKRKGVV------------DG--- 227 (513)
Q Consensus 169 ~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~----av~l~~~dGnfvt-A~p~Gvi------------dG--- 227 (513)
+++ .++.|.+.++|+++|. ..+++.|+. ++-+...|..|-. .||.|.+ +|
T Consensus 74 d~~~a~sqG~iGy~l~q~l~---------~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~ 144 (297)
T PRK09411 74 DVLVAESQGMIGYMLAQSLS---------AQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQM 144 (297)
T ss_pred hhhhhhcccHHHHHHHHHHH---------HcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEE
Confidence 776 6799999999998853 446555544 3456667777776 4677742 12
Q ss_pred -ccCcccceE-------EEecHHHHHHHhcCCceEEEc-----CCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecc
Q 010333 228 -VDYGATGEV-------KKVDVTRMRERLDGGCLVILS-----NLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDG 294 (513)
Q Consensus 228 -vD~g~tG~V-------r~Vd~~~I~~LLd~G~IPVIs-----pvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv 294 (513)
.|-.+.++| +.+|.+.|+.||++|+|||.+ |++.+.+|...|+|+|.+|+.+|.+|+||+||||||+
T Consensus 145 ~~dg~g~rrVVpSP~P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDV 224 (297)
T PRK09411 145 KRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDA 224 (297)
T ss_pred EecCCceEEEccCCCCcceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCc
Confidence 343457788 899999999999999999998 6666666888999999999999999999999999999
Q ss_pred cccC-----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccC
Q 010333 295 PILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNN 369 (513)
Q Consensus 295 ~gld-----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (513)
+|++ +++++|++++.+|+++++..
T Consensus 225 dGV~~n~~~p~~~~I~~it~~e~~~~~~~--------------------------------------------------- 253 (297)
T PRK09411 225 DAVYENWGTPQQRAIRHATPDELAPFAKA--------------------------------------------------- 253 (297)
T ss_pred hhhccCCCCCCCcCCCCcCHHHHHHhccC---------------------------------------------------
Confidence 9873 45789999999888766420
Q ss_pred CCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 370 GVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 370 ~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
+| | |.+|++||..+++.|..+++|.+. .. +.+++.+. .||.|.
T Consensus 254 -----~G-g---------------------M~pKVeAA~~~v~~~g~~a~I~~l---~~-~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 254 -----DG-A---------------------MGPKVTAVSGYVRSRGKPAWIGAL---SR-IEETLAGE-AGTCIS 296 (297)
T ss_pred -----CC-C---------------------cHHHHHHHHHHHHhCCCeEEECCh---hH-HHHHHCCC-CCeEEe
Confidence 35 5 999999999999998888988652 22 35666554 899985
No 29
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.96 E-value=3.5e-28 Score=254.53 Aligned_cols=238 Identities=19% Similarity=0.263 Sum_probs=176.9
Q ss_pred CCeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHH
Q 010333 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a 171 (513)
.|++|||+||+++++++ +..++++|+.|++.|+++||||||+++++. .+++.. ++.++++.+++
T Consensus 5 ~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~--~~l~~~----~~~~~~~~qal--- 75 (368)
T PRK13402 5 WKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGY--HKLGFI----DRPSVPEKQAM--- 75 (368)
T ss_pred CcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCc--cccCCC----CCCCccHHHHH---
Confidence 47999999999998742 688999999999999999999999877654 444432 33356655443
Q ss_pred HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEec-HHHHHHHhcC
Q 010333 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDG 250 (513)
Q Consensus 172 ~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd-~~~I~~LLd~ 250 (513)
+++||.. ++..|. ..|+++|++ +.++...+..|... -++.+ .++|+.+|+.
T Consensus 76 -aavGq~~--l~~~~~-----~~f~~~g~~----~aqvLlT~~d~~~~----------------~~y~n~~~~l~~LL~~ 127 (368)
T PRK13402 76 -AAAGQGL--LMATWS-----KLFLSHGFP----AAQLLLTHGDLRDR----------------ERYINIRNTINVLLER 127 (368)
T ss_pred -HHhhHHH--HHHHHH-----HHHHHCCCe----EEEEEEecchhhhH----------------HHHHHHHHHHHHHHHC
Confidence 5678876 666664 478999987 33332222222110 01122 3799999999
Q ss_pred CceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC---C----CCccccccCH--HHHHHHHHHhhh
Q 010333 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTL--QEADSLIRQRVK 321 (513)
Q Consensus 251 G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld---~----~g~lI~~Lt~--~Ea~~ll~~~~~ 321 (513)
|+|||+++...-.+.|+.+.|+|.+|+.+|.+|+||.|+|+|||+|++ | ++++|++++. +++..+..
T Consensus 128 g~IPIinenD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~---- 203 (368)
T PRK13402 128 GILPIINENDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAG---- 203 (368)
T ss_pred CcEEEEeCCCcEeecccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhc----
Confidence 999999974333445677889999999999999999999999999973 2 6899999975 34433320
Q ss_pred hhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcH
Q 010333 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (513)
Q Consensus 322 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~ 401 (513)
+.++.+++| | |.
T Consensus 204 ----------------------------------------------~~~s~~gtG-G---------------------M~ 215 (368)
T PRK13402 204 ----------------------------------------------GAGSNVGTG-G---------------------MR 215 (368)
T ss_pred ----------------------------------------------ccccCcCcC-C---------------------ch
Confidence 123445677 6 99
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCC
Q 010333 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (513)
Q Consensus 402 ~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ 447 (513)
+||+||..|.+.|++ ++|+++..++. |.+++.++..||+|.+..
T Consensus 216 ~Kl~Aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~~ 259 (368)
T PRK13402 216 TKIQAAKIAMSHGIE-TFIGNGFTADI-FNQLLKGQNPGTYFTPEE 259 (368)
T ss_pred HHHHHHHHHHHcCCc-EEEEcCCCchH-HHHHhcCCCCceEEecCC
Confidence 999999999999998 89999998886 677888888999997643
No 30
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.96 E-value=1.5e-27 Score=250.30 Aligned_cols=239 Identities=21% Similarity=0.259 Sum_probs=178.0
Q ss_pred CCeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHH
Q 010333 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a 171 (513)
.+++||||||++++++. +..++++|+.++..|+++||||||+ +...+..++++.++ .+....+ +
T Consensus 8 ~~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGa--i~~g~~~l~l~~~~------~~~~~~q-a 78 (372)
T PRK05429 8 ARRIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGA--VAAGRERLGLPERP------KTLAEKQ-A 78 (372)
T ss_pred CCEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccH--hhhhHhhcCCCCCC------CchHHHH-H
Confidence 47899999999998742 6789999999999999999999984 66666677776432 1222223 3
Q ss_pred HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEec-HHHHHHHhcC
Q 010333 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDG 250 (513)
Q Consensus 172 ~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd-~~~I~~LLd~ 250 (513)
++++||.. ++..|. ..|+++|++ ++++...+.+|.. +.+.+| .+.|+.||+.
T Consensus 79 ~aavGq~~--L~~~~~-----~~l~~~gi~----~~qil~t~~d~~~----------------~~~~ln~~~~i~~Ll~~ 131 (372)
T PRK05429 79 AAAVGQSR--LMQAYE-----ELFARYGIT----VAQILLTRDDLED----------------RERYLNARNTLRTLLEL 131 (372)
T ss_pred HHHHhHHH--HHHHHH-----HHHHHCCCC----EEEEEeehhHhhh----------------hhHhhhHHHHHHHHHHC
Confidence 45677754 555554 478999987 3444233222211 112445 4899999999
Q ss_pred CceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCH--HHHHHHHHHhhh
Q 010333 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEADSLIRQRVK 321 (513)
Q Consensus 251 G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~--~Ea~~ll~~~~~ 321 (513)
|+|||+++...-.+.++.++|+|.+|+.+|.+|+||+|+|+|||+|++ +++++|++++. +|+++++..
T Consensus 132 g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~--- 208 (372)
T PRK05429 132 GVVPIINENDTVATDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGG--- 208 (372)
T ss_pred CCEEEEcCCCccceecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcC---
Confidence 999999974333334566899999999999999999999999999973 35899999986 456555421
Q ss_pred hhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcH
Q 010333 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (513)
Q Consensus 322 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~ 401 (513)
.++.+++| | |.
T Consensus 209 -----------------------------------------------~~~~~gtG-G---------------------M~ 219 (372)
T PRK05429 209 -----------------------------------------------AGSGLGTG-G---------------------MA 219 (372)
T ss_pred -----------------------------------------------CCCCcCcC-C---------------------cH
Confidence 12334566 5 99
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCC
Q 010333 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (513)
Q Consensus 402 ~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ 447 (513)
+||+||..|.+.|++ ++|+|+..++. |.++|.+++.||+|.+..
T Consensus 220 ~Kl~aa~~a~~~Gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~~ 263 (372)
T PRK05429 220 TKLEAARIATRAGIP-VVIASGREPDV-LLRLLAGEAVGTLFLPQE 263 (372)
T ss_pred HHHHHHHHHHHCCCe-EEEEcCCCccH-HHHHhcCCCCCEEEeeCC
Confidence 999999999999998 99999998885 778888889999998653
No 31
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.96 E-value=1.3e-27 Score=242.58 Aligned_cols=246 Identities=17% Similarity=0.190 Sum_probs=175.1
Q ss_pred CCeEEEEeCCccCCCCC--------hHHHHHHHHHHHhCCCeEE-EEeCChHHHHHHHHHcCC-Ccc----ccCCccCCC
Q 010333 99 GGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFV-LVPGTHVQIDKLLSERGH-EAK----YLGRYRITD 164 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~--------l~~l~~dIA~L~~lGirvV-LVHGggpqI~~~L~~~Gi-~~~----~~~G~RvTd 164 (513)
.|++|||+||++|++++ +..++++|+.|+..|++|| ++||+..+.+..+...+. ... ...+.++..
T Consensus 8 ~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~~~~~ 87 (284)
T cd04256 8 AKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQLKDM 87 (284)
T ss_pred CCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhcccccccCC
Confidence 48999999999998753 5889999999999999999 777777777777755432 100 011112222
Q ss_pred HHHHH--HHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHH
Q 010333 165 SESLA--AAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 242 (513)
Q Consensus 165 ~~~L~--~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~ 242 (513)
+..+. .+.+++||.. |++.|. ..|.++|++. ..+ |+|.. ||.. .+.+....+
T Consensus 88 ~~~~~~~qa~aa~gq~~--L~~~y~-----~~f~~~~~~~----~q~------llt~~--------d~~~-~~~~~~~~~ 141 (284)
T cd04256 88 PQMELDGRACAAVGQSG--LMALYE-----AMFTQYGITV----AQV------LVTKP--------DFYD-EQTRRNLNG 141 (284)
T ss_pred cchhHHHHHHHHcccHH--HHHHHH-----HHHHHcCCcH----HHe------eeecc--------cccc-HHHHHHHHH
Confidence 22222 2457888866 888886 5899999862 211 23322 3321 111223469
Q ss_pred HHHHHhcCCceEEEcCCc-cC------CCCcee--ecChHHHHHHHHHHcCCCEEEEeecccccC------CCCcccccc
Q 010333 243 RMRERLDGGCLVILSNLG-YS------SSGEVL--NCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFL 307 (513)
Q Consensus 243 ~I~~LLd~G~IPVIspvg-~s------~tGei~--nld~D~vAa~lA~aL~ADkLIfLTDv~gld------~~g~lI~~L 307 (513)
.|+.+|+.|+|||+++.+ +. .+|+.+ ++|+|.+|+.+|.+++||+|||+|||+|++ +++++|+++
T Consensus 142 ~l~~lL~~g~iPVi~~nD~v~~~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~a~~I~~i 221 (284)
T cd04256 142 TLEELLRLNIIPIINTNDAVSPPPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTF 221 (284)
T ss_pred HHHHHHHCCCEEEEeCCCcccccccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCCCCCCeEcccc
Confidence 999999999999999632 22 224444 499999999999999999999999999973 358999999
Q ss_pred CHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCcccccccc
Q 010333 308 TLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFA 387 (513)
Q Consensus 308 t~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~ 387 (513)
+..+.+.+.. +..+.+++| |
T Consensus 222 ~~~~~~~~~~--------------------------------------------------~~~s~~gtG-G--------- 241 (284)
T cd04256 222 YPGDQQSITF--------------------------------------------------GTKSRVGTG-G--------- 241 (284)
T ss_pred cHhHHHHhhc--------------------------------------------------ccccCcccC-C---------
Confidence 8766543321 012234466 5
Q ss_pred ccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 388 IGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 388 ~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
|.+||+||..|.+.|++ ++|++|..++. |.+++.++..||.|.
T Consensus 242 ------------M~~Kl~Aa~~a~~~Gi~-v~I~~G~~~~~-i~~~l~G~~~GT~~~ 284 (284)
T cd04256 242 ------------MEAKVKAALWALQGGTS-VVITNGMAGDV-ITKILEGKKVGTFFT 284 (284)
T ss_pred ------------cHHHHHHHHHHHHCCCe-EEEEcCCCccH-HHHHHcCCCCCEEeC
Confidence 99999999999999997 89999999987 678888888999983
No 32
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.95 E-value=3.6e-27 Score=241.10 Aligned_cols=253 Identities=19% Similarity=0.217 Sum_probs=187.5
Q ss_pred eEEEEeCCccCCCCC-----------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHH
Q 010333 101 TFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLA 169 (513)
Q Consensus 101 t~VIKlGGs~l~~~~-----------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~ 169 (513)
++||||||++|..+. ++..++.|+.|.+.|+++|||||+|||+..++....... ..+++..|+
T Consensus 1 rivialgGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~------~~~~~~pld 74 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAA------EKVPAYPLD 74 (308)
T ss_pred CEEEEecHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhcc------ccCCCCCcc
Confidence 589999999997521 578899999999999999999999999998877654331 123445566
Q ss_pred HH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCccee----eEeeecCCceee-eeecccc-c-----------c----
Q 010333 170 AA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHE----VGVSVASGNFLA-AKRKGVV-D-----------G---- 227 (513)
Q Consensus 170 ~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~a----v~l~~~dGnfvt-A~p~Gvi-d-----------G---- 227 (513)
.+ .+.+|.+.+.|+.+|. +.|.++|++.++.. +.+...|..|-. .||.|.. + |
T Consensus 75 ~~~a~~~G~ig~~~~~al~-----~~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~ 149 (308)
T cd04235 75 VCGAMSQGMIGYMLQQALD-----NELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFK 149 (308)
T ss_pred hhcchhhHHHHHHHHHHHH-----HHHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEE
Confidence 65 5789999999988886 58899998876543 334445555555 3566532 1 0
Q ss_pred cc--Ccccce------EEEecHHHHHHHhcCCceEEEc-----CCccCCCCcee----ecChHHHHHHHHHHcCCCEEEE
Q 010333 228 VD--YGATGE------VKKVDVTRMRERLDGGCLVILS-----NLGYSSSGEVL----NCNTYEVATACALAIEADKLIC 290 (513)
Q Consensus 228 vD--~g~tG~------Vr~Vd~~~I~~LLd~G~IPVIs-----pvg~s~tGei~----nld~D~vAa~lA~aL~ADkLIf 290 (513)
.| -+|.-. ++.++.+.|+.||++|+|||++ |+..+ +|+++ ++|+|.+|+.+|.+|+||+|++
T Consensus 150 ~d~~~g~rrvV~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~-~~~~~gveaVid~D~~AallA~~l~Ad~Lii 228 (308)
T cd04235 150 EDAGRGYRRVVPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVRE-GGGLKGVEAVIDKDLASALLAEEINADLLVI 228 (308)
T ss_pred EeCCCCceeeeCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEc-CCceeeeeeccCccHHHHHHHHHcCCCEEEE
Confidence 01 112211 2578899999999999999999 55444 34444 4799999999999999999999
Q ss_pred eecccccC-----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccc
Q 010333 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (513)
Q Consensus 291 LTDv~gld-----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (513)
+|||+|++ +++++|++++.+|+.+++..+.
T Consensus 229 lTdVdGVy~~~~~pda~~i~~Is~~e~~~l~~~g~--------------------------------------------- 263 (308)
T cd04235 229 LTDVDNVYINFGKPNQKALEQVTVEELEKYIEEGQ--------------------------------------------- 263 (308)
T ss_pred EecCCeEECCCCCCCCeEcCCcCHHHHHHHHhcCc---------------------------------------------
Confidence 99999873 3589999999998888764211
Q ss_pred cccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 366 ~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
|.+| | |.+|+++|..+++.|..+++|.+ .+. +.+++.++ .||.|.
T Consensus 264 -------~~tG-G---------------------M~pKv~aA~~~a~~gg~~v~I~~---~~~-i~~aL~G~-~GT~I~ 308 (308)
T cd04235 264 -------FAPG-S---------------------MGPKVEAAIRFVESGGKKAIITS---LEN-AEAALEGK-AGTVIV 308 (308)
T ss_pred -------cccC-C---------------------cHHHHHHHHHHHHhCCCeEEECC---HHH-HHHHHCCC-CCeEEC
Confidence 2245 5 99999999999998877889977 333 45666555 899983
No 33
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.95 E-value=3e-27 Score=235.41 Aligned_cols=234 Identities=20% Similarity=0.262 Sum_probs=170.0
Q ss_pred eEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHH
Q 010333 101 TFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAME 173 (513)
Q Consensus 101 t~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~ 173 (513)
++||||||+++++++ +.+++++|+.++..|+++||||||+.. .....+++..++ ......+ +..
T Consensus 1 ~iViK~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~--~g~~~~~~~~~~------~~~~~~~-~~~ 71 (251)
T cd04242 1 RIVVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVA--AGRQRLGLEKRP------KTLPEKQ-ALA 71 (251)
T ss_pred CEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchh--hChhhhccCcCC------CchhHHH-HHH
Confidence 489999999999875 678899999999999999999986322 223344443321 1112233 345
Q ss_pred HHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEec-HHHHHHHhcCCc
Q 010333 174 AAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDGGC 252 (513)
Q Consensus 174 a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd-~~~I~~LLd~G~ 252 (513)
++|+.. ++..|+ ..|+++|++ +.++-..+++|..++ .+.+ .+.|+.+|+.|+
T Consensus 72 ~~Gq~~--l~~~~~-----~~l~~~Gi~----~~q~l~t~~~~~~~~----------------~~~~~~~~i~~ll~~g~ 124 (251)
T cd04242 72 AVGQSL--LMALYE-----QLFAQYGIK----VAQILLTRDDFEDRK----------------RYLNARNTLETLLELGV 124 (251)
T ss_pred HHhHHH--HHHHHH-----HHHHHcCCe----EEEEEEehhHhcchH----------------HHHHHHHHHHHHHHCCC
Confidence 778754 555554 478999987 333333343333221 0122 589999999999
Q ss_pred eEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccC--HHHHHHHHHHhhhhh
Q 010333 253 LVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLT--LQEADSLIRQRVKQS 323 (513)
Q Consensus 253 IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt--~~Ea~~ll~~~~~~~ 323 (513)
|||+++.+.-.++++.++|+|.+|+.+|.+|+||+|+|+|||+|++ +++++|++++ .+|+.++...
T Consensus 125 iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~----- 199 (251)
T cd04242 125 IPIINENDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGG----- 199 (251)
T ss_pred EEEEcCCCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcc-----
Confidence 9999974332334567889999999999999999999999999973 2589999999 7777666411
Q ss_pred hHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHH
Q 010333 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (513)
Q Consensus 324 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~K 403 (513)
..+.+++| | |.+|
T Consensus 200 ---------------------------------------------~~~~~~tg-g---------------------m~~K 212 (251)
T cd04242 200 ---------------------------------------------SGSSVGTG-G---------------------MRTK 212 (251)
T ss_pred ---------------------------------------------cCcCcccC-C---------------------cHHH
Confidence 11223455 5 9999
Q ss_pred HHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 404 L~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
+++|..|.+.|++ ++|+|+..++. |.++|.+++.||+|.
T Consensus 213 l~a~~~a~~~gi~-v~I~~g~~~~~-i~~~l~g~~~GT~i~ 251 (251)
T cd04242 213 LKAARIATEAGIP-VVIANGRKPDV-LLDILAGEAVGTLFL 251 (251)
T ss_pred HHHHHHHHHCCCc-EEEEcCCCCCH-HHHHHcCCCCCeEeC
Confidence 9999999999998 99999998986 678888889999983
No 34
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.95 E-value=1.5e-26 Score=232.82 Aligned_cols=237 Identities=20% Similarity=0.239 Sum_probs=169.0
Q ss_pred CCeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHcCCCccccCCccCCCHHHHHH
Q 010333 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLV-PGTHVQIDKLLSERGHEAKYLGRYRITDSESLAA 170 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLV-HGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~ 170 (513)
.+++||||||+++++++ +.+++++|+.++..|+++||| ||++.+.+..+.. .. +..+...++.
T Consensus 9 ~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~---~~------~~~~~~~~~a 79 (266)
T PRK12314 9 AKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKL---DK------RPTSLAEKQA 79 (266)
T ss_pred CCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeecc---cc------CCCCHHHHHH
Confidence 57899999999999542 789999999999999999987 7766665544422 21 1223333443
Q ss_pred HHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcC
Q 010333 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (513)
Q Consensus 171 a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~ 250 (513)
.+++||.. +++.|+ ..|+++|++ +..+ ++|.. ||. ..+......+.|+.+|++
T Consensus 80 -~aa~Gq~~--l~~~~~-----~~~~~~g~~----~~q~------llT~~--------~~~-~~~~~~~~~~~l~~ll~~ 132 (266)
T PRK12314 80 -LAAVGQPE--LMSLYS-----KFFAEYGIV----VAQI------LLTRD--------DFD-SPKSRANVKNTFESLLEL 132 (266)
T ss_pred -HHHHhHHH--HHHHHH-----HHHHHcCCe----EEEE------EEecc--------ccc-chHHHHHHHHHHHHHHHC
Confidence 36889854 777775 579999986 2222 22211 222 122223346899999999
Q ss_pred CceEEEcC---CccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCH--HHHHHHHHH
Q 010333 251 GCLVILSN---LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEADSLIRQ 318 (513)
Q Consensus 251 G~IPVIsp---vg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~--~Ea~~ll~~ 318 (513)
|+|||+++ ++.+..|+ .+.|+|.+|+++|.+|+||+|+|+|||+|++ +++++|++++. .+..++..
T Consensus 133 g~IPVv~~nd~v~~~~~~~-~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~- 210 (266)
T PRK12314 133 GILPIVNENDAVATDEIDT-KFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAG- 210 (266)
T ss_pred CCEEEEcCCCCeeeccccc-eecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhc-
Confidence 99999995 33443343 3568999999999999999999999999973 35788888863 22222210
Q ss_pred hhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhcccc
Q 010333 319 RVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLN 398 (513)
Q Consensus 319 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~ 398 (513)
+.++.+++| |
T Consensus 211 -------------------------------------------------~~~~~~~tG-G-------------------- 220 (266)
T PRK12314 211 -------------------------------------------------GAGSKFGTG-G-------------------- 220 (266)
T ss_pred -------------------------------------------------cCCCCcccC-c--------------------
Confidence 012234466 5
Q ss_pred CcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecC
Q 010333 399 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (513)
Q Consensus 399 ~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d 446 (513)
|.+|+++|..|.+.|++ ++|+|++.++. |.+++.+++.||.|.+.
T Consensus 221 -M~~Kl~aa~~a~~~gv~-v~I~~g~~~~~-i~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 221 -MVTKLKAAKFLMEAGIK-MVLANGFNPSD-ILDFLEGESIGTLFAPK 265 (266)
T ss_pred -hHHHHHHHHHHHHCCCe-EEEEcCCCchH-HHHHHcCCCCceEEccC
Confidence 99999999999999998 99999999988 57888888899999753
No 35
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.95 E-value=2.7e-26 Score=230.78 Aligned_cols=234 Identities=16% Similarity=0.189 Sum_probs=169.0
Q ss_pred CCeEEEEeCCccCCCCC------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHH
Q 010333 99 GGTFVVIISGEIVSSPY------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~ 172 (513)
-|++|||+||+++++++ +..++++|+.|++ ++++||||||+ +......+++... .. .-..++
T Consensus 8 ~~riVIKlG~Svit~~~~~~~~~~~~l~~~i~~l~~-~~~vilVssGa--va~g~~~~~~~~~--------~~-~~~qa~ 75 (264)
T PTZ00489 8 VKRIVVKVGSSILVDNQEIAAHRIEALCRFIADLQT-KYEVILVTSGA--VAAGYTKKEMDKS--------YV-PNKQAL 75 (264)
T ss_pred CCEEEEEeccceeeCCCCcCHHHHHHHHHHHHHHhc-CCeEEEEecCh--HhcChhhcCCCcc--------cc-HHHHHH
Confidence 48899999999998754 5788999999986 79999999886 3333334444321 11 123345
Q ss_pred HHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEec-HHHHHHHhcCC
Q 010333 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDGG 251 (513)
Q Consensus 173 ~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd-~~~I~~LLd~G 251 (513)
+++||.+ |+..|. ..|.++|+. ..++ ++++. |+. .+.+..+ .+.|+.+|+.|
T Consensus 76 aaiGq~~--L~~~y~-----~~f~~~~~~----~aqi------Llt~~--------d~~--~~~~~~n~~~~l~~lL~~g 128 (264)
T PTZ00489 76 ASMGQPL--LMHMYY-----TELQKHGIL----CAQM------LLAAY--------DLD--SRKRTINAHNTIEVLISHK 128 (264)
T ss_pred HHhCHHH--HHHHHH-----HHHHhCCCe----EEEe------eeecc--------ccc--cchhhHHHHHHHHHHHHCC
Confidence 7889965 666654 578899986 2222 22221 221 2223334 59999999999
Q ss_pred ceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC---C----CCcc---ccccCHHHHHHHHHHhhh
Q 010333 252 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---E----SGHL---IRFLTLQEADSLIRQRVK 321 (513)
Q Consensus 252 ~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld---~----~g~l---I~~Lt~~Ea~~ll~~~~~ 321 (513)
.|||+++.+..+..|+.|.|+|.+|+.+|..++||+|||+||++|++ | ++++ +++++.+++.... +
T Consensus 129 ~VPIinend~~~~~e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~--~-- 204 (264)
T PTZ00489 129 VIPIINENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEA--T-- 204 (264)
T ss_pred CEEEECCCCCcccceeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhc--C--
Confidence 99999998777777899999999999999999999999999999973 2 3455 6677765442210 0
Q ss_pred hhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcH
Q 010333 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (513)
Q Consensus 322 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~ 401 (513)
..+.+++| | |.
T Consensus 205 -----------------------------------------------~~~~~~tG-G---------------------M~ 215 (264)
T PTZ00489 205 -----------------------------------------------PNNRFATG-G---------------------IV 215 (264)
T ss_pred -----------------------------------------------cCCCcccC-C---------------------hH
Confidence 11234466 5 99
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCC--CCeeEEecC
Q 010333 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRD--GMGTMVASD 446 (513)
Q Consensus 402 ~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~d--G~GT~I~~d 446 (513)
+||+||..|.+.|++ ++|++|..++. |.+++.++ ..||.|.+.
T Consensus 216 ~Kl~aa~~a~~~Gi~-v~I~~g~~~~~-i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 216 TKLQAAQFLLERGGK-MYLSSGFHLEK-ARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred HHHHHHHHHHHCCCC-EEEEeCCCchH-HHHHHcCCCCCCceEEeec
Confidence 999999999999997 89999999987 56666554 379999764
No 36
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.95 E-value=2.2e-26 Score=228.41 Aligned_cols=189 Identities=18% Similarity=0.224 Sum_probs=158.3
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEe-----CChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHH
Q 010333 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVP-----GTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEA 174 (513)
Q Consensus 101 t~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVH-----GggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a 174 (513)
.+||||||+++++++ +++++++|+.+...|+++|+|| ||++++++.+..++.. .|.|+|+ ++++.+ .+
T Consensus 1 ~~ViK~GGs~l~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~----~~~~~t~-~~~~~~-~~ 74 (244)
T cd04260 1 IIVQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYA----ENSDISP-RELDLL-MS 74 (244)
T ss_pred CEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHh----hcCCCCH-HHHHHH-HH
Confidence 379999999999877 7999999999999999988887 7888998877766533 2567766 467766 57
Q ss_pred HhHHHHH--HHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCc
Q 010333 175 AGGIRMM--IEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGC 252 (513)
Q Consensus 175 ~G~l~~~--L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~ 252 (513)
+|+++.. +++ .|+++|++ ++++++.+..++++.. ++ .|++..++.+.++.+|+.|.
T Consensus 75 ~Ge~~~~~~~~~---------~l~~~Gi~----a~~l~~~~~~lit~~~--------~~-~~~v~~~~~~~l~~ll~~g~ 132 (244)
T cd04260 75 CGEIISAVVLTS---------TLRAQGLK----AVALTGAQAGILTDDN--------YS-NAKIIKVNPKKILSALKEGD 132 (244)
T ss_pred HhHHHHHHHHHH---------HHHhCCCC----eEEechHHcCEEecCC--------CC-ceeeeccCHHHHHHHHhCCC
Confidence 8988754 333 58899988 7889988888888653 32 47788899999999999999
Q ss_pred eEEEcCC-ccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHH
Q 010333 253 LVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (513)
Q Consensus 253 IPVIspv-g~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~ 317 (513)
|||++++ +.+.+|+++|+ ++|.+|+.+|.+|+||+++|+|||+|++ +++++|++++.+|+++++.
T Consensus 133 VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~ 208 (244)
T cd04260 133 VVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAH 208 (244)
T ss_pred EEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHH
Confidence 9999995 88889999999 6999999999999999999999999973 3689999999999998864
No 37
>PRK12354 carbamate kinase; Reviewed
Probab=99.95 E-value=1.6e-26 Score=235.89 Aligned_cols=252 Identities=20% Similarity=0.192 Sum_probs=182.3
Q ss_pred CeEEEEeCCccCCCCC-----------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHH
Q 010333 100 GTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-----------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L 168 (513)
+++||||||++|.+++ .+..++.|+.|.. |+++||+||+|||+..++.+...- +..++..|
T Consensus 1 ~~iVialGGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~-------~~~~~~pl 72 (307)
T PRK12354 1 MRIVVALGGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAY-------KDVTPYPL 72 (307)
T ss_pred CeEEEEeccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHh-------cCCCCCCc
Confidence 4699999999998743 3467888888877 999999999999988655443211 11134556
Q ss_pred HHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceee-eeecccc----------------ccccC
Q 010333 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLA-AKRKGVV----------------DGVDY 230 (513)
Q Consensus 169 ~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvt-A~p~Gvi----------------dGvD~ 230 (513)
+.+ .+..|.+.+.++++|.+ .|.+..+.+-+.++-+...|..|-. .||.|.+ --.|-
T Consensus 73 ~~~~a~sqg~iGy~l~q~l~~-----~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg 147 (307)
T PRK12354 73 DVLGAETEGMIGYMLEQELGN-----LLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDG 147 (307)
T ss_pred chhcccccchHHHHHHHHHHH-----HhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecC
Confidence 654 56889999999988763 4444333333344555566655655 3555431 11232
Q ss_pred cccceEE-------EecHHHHHHHhcCCceEEEc-----CCccCCCCceee----cChHHHHHHHHHHcCCCEEEEeecc
Q 010333 231 GATGEVK-------KVDVTRMRERLDGGCLVILS-----NLGYSSSGEVLN----CNTYEVATACALAIEADKLICIIDG 294 (513)
Q Consensus 231 g~tG~Vr-------~Vd~~~I~~LLd~G~IPVIs-----pvg~s~tGei~n----ld~D~vAa~lA~aL~ADkLIfLTDv 294 (513)
.+.++|. .++.+.|+.||++|+|||.+ |+..+.+++..+ +|+|.+|+.+|.+|+||+|+|||||
T Consensus 148 ~g~rrVv~SP~P~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdV 227 (307)
T PRK12354 148 DYFRRVVPSPRPKRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDV 227 (307)
T ss_pred CceEEEecCCCCcceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCC
Confidence 3456665 78999999999999998887 777766565555 6899999999999999999999999
Q ss_pred cccC-----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccC
Q 010333 295 PILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNN 369 (513)
Q Consensus 295 ~gld-----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (513)
+|++ +++++|++++.+|++++ .
T Consensus 228 dGVy~~~~~p~~k~i~~it~~e~~~~--~--------------------------------------------------- 254 (307)
T PRK12354 228 DAVYLDWGKPTQRAIAQATPDELREL--G--------------------------------------------------- 254 (307)
T ss_pred cceecCCCCCCCeECCCCCHHHHHhh--C---------------------------------------------------
Confidence 9873 34689999998887665 1
Q ss_pred CCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCC
Q 010333 370 GVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (513)
Q Consensus 370 ~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ 447 (513)
|.+| | |.+|++||..+++.|.++++|.+ ... +.+++.+. .||.|.++.
T Consensus 255 ---f~~G-g---------------------M~pKV~AA~~~~~~gg~~viI~~---~~~-l~~al~G~-~GT~I~~~~ 302 (307)
T PRK12354 255 ---FAAG-S---------------------MGPKVEAACEFVRATGKIAGIGS---LED-IQAILAGE-AGTRISPET 302 (307)
T ss_pred ---CCcC-C---------------------hHHHHHHHHHHHHhCCCEEEECC---HHH-HHHHHCCC-CceEEecCC
Confidence 1245 5 99999999999998888888854 223 56777654 899998644
No 38
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.95 E-value=6.5e-26 Score=224.05 Aligned_cols=188 Identities=19% Similarity=0.236 Sum_probs=152.2
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHhH-
Q 010333 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGG- 177 (513)
Q Consensus 101 t~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGg-gpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G~- 177 (513)
.+|||+||+++.+++ +.+++++|+.++..|+++|||||| ++.++++++.. .... +.++...++++ .++|+
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~-~~~~-----~~~~~~~~~~i-~a~Ge~ 73 (239)
T cd04261 1 LIVQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELA-KEIS-----PRPPARELDVL-LSTGEQ 73 (239)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHH-HHhc-----cCCCHHHHHHH-HHHHHH
Confidence 379999999998865 899999999999999999999997 66677666542 1111 45677888875 45564
Q ss_pred HHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEc
Q 010333 178 IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILS 257 (513)
Q Consensus 178 l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIs 257 (513)
++..+.. ..|+++|++ +.++++.+..++++.+ |. .|++..++.+.|+.++++|.|||++
T Consensus 74 ~~~~l~~--------~~l~~~g~~----a~~l~~~~~~l~~~~~--------~~-~~~i~~~~~~~l~~ll~~~~ipVi~ 132 (239)
T cd04261 74 VSIALLA--------MALNRLGIK----AISLTGWQAGILTDGH--------HG-KARIIDIDPDRIRELLEEGDVVIVA 132 (239)
T ss_pred HHHHHHH--------HHHHhCCCC----eEEechhhCCEEecCC--------CC-cceechhhHHHHHHHHHcCCeEEEc
Confidence 4444332 258899987 6888888877777643 32 5788888999999999999999999
Q ss_pred CC-ccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeecccccC---C----CCccccccCHHHHHHHH
Q 010333 258 NL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLI 316 (513)
Q Consensus 258 pv-g~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld---~----~g~lI~~Lt~~Ea~~ll 316 (513)
+. +.+.+|+++|+ |+|.+|+.+|.+|+||+|+++|||+|++ | +++++++++.+|++++.
T Consensus 133 G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~ 202 (239)
T cd04261 133 GFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMA 202 (239)
T ss_pred CccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHH
Confidence 96 88889999999 9999999999999999999999999973 2 58899999999988875
No 39
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.94 E-value=2.6e-26 Score=240.39 Aligned_cols=238 Identities=17% Similarity=0.247 Sum_probs=171.3
Q ss_pred CeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHH
Q 010333 100 GTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~ 172 (513)
+++||||||+++++++ +..++++|+.|+..|+++||||||+. ...+..++++.+. .+....+ ++
T Consensus 1 ~riVIKiGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~--~~g~~~lg~~~~~------~~l~~~q-a~ 71 (363)
T TIGR01027 1 QRIVVKVGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGAI--AAGFEALGLPERP------KTLAEKQ-AL 71 (363)
T ss_pred CeEEEEeccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHH--hcCccccCCCCCc------cchHHHH-HH
Confidence 5799999999999865 68899999999999999999999973 3445556665432 2222233 34
Q ss_pred HHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecH-HHHHHHhcCC
Q 010333 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV-TRMRERLDGG 251 (513)
Q Consensus 173 ~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~-~~I~~LLd~G 251 (513)
+++|+.. ++..|. ..|.++|++ +.++ ++|.. ||. .+.++.|. +.|+.||++|
T Consensus 72 aa~Gq~~--l~~~~~-----~~l~~~Gi~----~aqi------llt~~--------d~~--~~~~~lna~~~i~~Ll~~g 124 (363)
T TIGR01027 72 AAVGQVR--LMQLYE-----QLFSQYGIK----VAQI------LLTRA--------DFS--DRERYLNARNTLEALLELG 124 (363)
T ss_pred HHhChHH--HHHHHH-----HHHHHcCCe----EEEE------EEecc--------chh--hHHHHHHHHHHHHHHHhCC
Confidence 6788854 555554 478899986 2332 33332 221 11133455 8999999999
Q ss_pred ceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHH-HHHHHHHhhhhh
Q 010333 252 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQE-ADSLIRQRVKQS 323 (513)
Q Consensus 252 ~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~E-a~~ll~~~~~~~ 323 (513)
.|||+++...-...++.+.|+|.+|+.+|.+|+||+|||+|||+|++ |++++|++++..+ ....+..
T Consensus 125 ~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~----- 199 (363)
T TIGR01027 125 VVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAG----- 199 (363)
T ss_pred CEEEEeCCCceeeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhc-----
Confidence 99999863322223455679999999999999999999999999973 3468999997432 2111111
Q ss_pred hHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHH
Q 010333 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (513)
Q Consensus 324 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~K 403 (513)
+.++++++| | |.+|
T Consensus 200 --------------------------------------------~~~~~~gtG-G---------------------M~~K 213 (363)
T TIGR01027 200 --------------------------------------------DSGSSVGTG-G---------------------MRTK 213 (363)
T ss_pred --------------------------------------------CCCcCcCcC-C---------------------chHH
Confidence 012335566 5 9999
Q ss_pred HHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecC
Q 010333 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (513)
Q Consensus 404 L~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d 446 (513)
|+||..|.+.|++ ++|+|+..++. |.+++.++..||.|.+.
T Consensus 214 l~Aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~ 254 (363)
T TIGR01027 214 LQAADLATRAGVP-VIIASGSKPEK-IADALEGAPVGTLFHAQ 254 (363)
T ss_pred HHHHHHHHHCCCe-EEEEeCCCccH-HHHHhcCCCCcEEEeeC
Confidence 9999999999998 89999998876 67788888899999764
No 40
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.94 E-value=8.3e-26 Score=223.13 Aligned_cols=187 Identities=18% Similarity=0.230 Sum_probs=154.0
Q ss_pred EEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHhH-H
Q 010333 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPG-THVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGG-I 178 (513)
Q Consensus 102 ~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHG-ggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G~-l 178 (513)
+||||||+++.+++ +++++++|+.++..|+++||||| +++.++++++..+....+ .+.+.++.+ .++|+ +
T Consensus 2 iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~------~~~~~~~~i-~~~Ge~~ 74 (239)
T cd04246 2 IVQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPR------PSPRELDML-LSTGEQI 74 (239)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccC------CCHHHHHHH-HHHhHHH
Confidence 79999999999865 89999999999999999999999 588899888877665433 256677765 45675 3
Q ss_pred HHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEcC
Q 010333 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN 258 (513)
Q Consensus 179 ~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIsp 258 (513)
+..+.. ..|+++|++ ++.+++.+..++++.+ |+ .|++..++.+.|+++|++|.|||+++
T Consensus 75 ~~~~~~--------~~l~~~g~~----a~~l~~~~~~l~~~~~--------~~-~~~~~~~~~~~l~~ll~~g~ipVi~g 133 (239)
T cd04246 75 SAALLA--------MALNRLGIK----AISLTGWQAGILTDDH--------HG-NARIIDIDPKRILEALEEGDVVVVAG 133 (239)
T ss_pred HHHHHH--------HHHHhCCCC----eEEeccccCCEEecCC--------CC-ceeechhhHHHHHHHHhcCCEEEEcC
Confidence 433322 258899987 6788888877777653 22 47788889999999999999999999
Q ss_pred C-ccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHH
Q 010333 259 L-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLI 316 (513)
Q Consensus 259 v-g~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll 316 (513)
. +.+.+|+++++ |+|.+|+.+|.+|+||+|+|+|||+|++ ++++++++++.+|++++.
T Consensus 134 ~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~ 202 (239)
T cd04246 134 FQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMA 202 (239)
T ss_pred ccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHH
Confidence 5 78889999999 8999999999999999999999999983 368999999999988875
No 41
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.93 E-value=1.5e-25 Score=217.73 Aligned_cols=246 Identities=20% Similarity=0.214 Sum_probs=177.9
Q ss_pred CCeEEEEeCCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCH---HH
Q 010333 99 GGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDS---ES 167 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~--------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~---~~ 167 (513)
-+++|||+|++++++++ +..++++++.|+..|++++||.+|+.+.+ ++++..+.......|-|-. +.
T Consensus 9 a~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G--~qrLr~~~~~s~s~r~~l~~~~~l 86 (285)
T KOG1154|consen 9 AYRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFG--RQRLRQELLPSSSMRQTLKPQSEL 86 (285)
T ss_pred ceEEEEEecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhhh--HHHhhhhhccchhHHHhhCCccch
Confidence 37899999999999865 57899999999999999999999975544 3444433222111122111 13
Q ss_pred HHH-HHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEec-HHHHH
Q 010333 168 LAA-AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMR 245 (513)
Q Consensus 168 L~~-a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd-~~~I~ 245 (513)
.+. +++++||-+ |++.|. .+|.++|+. .+++ ++| ++ ||.. +-.+.| .++|.
T Consensus 87 ~e~rA~AAvGQ~~--Lmalye-----~lF~Qy~~~--iAQv--------LvT-~~-------Di~d--~~~r~Nl~~Ti~ 139 (285)
T KOG1154|consen 87 AEKRACAAVGQSG--LMALYE-----TLFTQYGIT--IAQV--------LVT-RN-------DILD--EQQRKNLQNTIS 139 (285)
T ss_pred hhHHHHHHhCcch--HHHHHH-----HHHHHhccc--hhee--------eec-Cc-------chhh--HHHHHHHHHHHH
Confidence 333 578899977 888886 589999986 2222 222 21 2221 112345 49999
Q ss_pred HHhcCCceEEEcCCc-cCCCCceeecC---hHHHHHHHHHHcCCCEEEEeecccccCC---CC---ccccccCHHHHHHH
Q 010333 246 ERLDGGCLVILSNLG-YSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPILDE---SG---HLIRFLTLQEADSL 315 (513)
Q Consensus 246 ~LLd~G~IPVIspvg-~s~tGei~nld---~D~vAa~lA~aL~ADkLIfLTDv~gld~---~g---~lI~~Lt~~Ea~~l 315 (513)
+||..|.|||+|... .++. ++.|.| +|.+|+.+|..++||.||+||||+|++. +. ++|+.++..+
T Consensus 140 eLL~m~viPIvNeNDavs~~-~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~~~~li~~~~~~~---- 214 (285)
T KOG1154|consen 140 ELLSMNVIPIVNENDAVSPR-EIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDADPSKLIHTFSPGD---- 214 (285)
T ss_pred HHHhCCceeeecCCCccCCc-ccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCCcceeeeeeccCC----
Confidence 999999999999754 4433 555666 9999999999999999999999999863 22 2333222100
Q ss_pred HHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhc
Q 010333 316 IRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLS 395 (513)
Q Consensus 316 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~ 395 (513)
..-..+||.+|.+|+| |
T Consensus 215 ---------------------------------------------~~v~~tfG~~SkvGtG-G----------------- 231 (285)
T KOG1154|consen 215 ---------------------------------------------PQVSTTFGSKSKVGTG-G----------------- 231 (285)
T ss_pred ---------------------------------------------CCCccccCccCccCcC-c-----------------
Confidence 0113579999999999 7
Q ss_pred cccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCC
Q 010333 396 RLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (513)
Q Consensus 396 ~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ 447 (513)
|.+|+.||..|..+||. +.|.+|..+.+ +..++....+||+|....
T Consensus 232 ----M~tKv~AA~~A~~~Gv~-viI~~g~~p~~-I~~iv~g~kvgt~f~~~~ 277 (285)
T KOG1154|consen 232 ----METKVKAAVNALNAGVS-VIITNGDAPEN-ITDIVEGKKVGTFFEQLK 277 (285)
T ss_pred ----chhhHHHHHHHhcCCce-EEEeCCCChHH-HHHHHhhhhhhhhhhhcc
Confidence 99999999999999998 89999999987 688888888999987544
No 42
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.93 E-value=1.5e-24 Score=216.32 Aligned_cols=258 Identities=19% Similarity=0.202 Sum_probs=195.7
Q ss_pred CeEEEEeCCccCCCCC-----------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHH
Q 010333 100 GTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-----------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L 168 (513)
+++||.|||++|.... ++..++.|+.|...|+++||+||+|||+..++.+......+ .-+++..|
T Consensus 1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~----~~~p~~PL 76 (312)
T COG0549 1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSE----KGVPAYPL 76 (312)
T ss_pred CeEEEEecchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccc----cCCCCccH
Confidence 5799999999997642 56788999999999999999999999999887765442211 11344567
Q ss_pred HHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcce----eeEeeecCCceee-eeeccccc------------c---
Q 010333 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLA-AKRKGVVD------------G--- 227 (513)
Q Consensus 169 ~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~----av~l~~~dGnfvt-A~p~Gvid------------G--- 227 (513)
+.+ .++.|.+.++|+++|. +.|.++|++.|+. .+-+...|..|.. .||+|.+- |
T Consensus 77 d~~~AmsQG~IGy~l~qal~-----n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~ 151 (312)
T COG0549 77 DVLVAMSQGMIGYMLQQALR-----NELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVF 151 (312)
T ss_pred HHHhHhhhhHHHHHHHHHHH-----HHHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEE
Confidence 765 6789999999999987 4788888765543 4556677777888 47888641 1
Q ss_pred ---ccCcccce------EEEecHHHHHHHhcCCceEEEcC-----CccCCC---CceeecChHHHHHHHHHHcCCCEEEE
Q 010333 228 ---VDYGATGE------VKKVDVTRMRERLDGGCLVILSN-----LGYSSS---GEVLNCNTYEVATACALAIEADKLIC 290 (513)
Q Consensus 228 ---vD~g~tG~------Vr~Vd~~~I~~LLd~G~IPVIsp-----vg~s~t---Gei~nld~D~vAa~lA~aL~ADkLIf 290 (513)
-+.||... ++.++.++|+.|+++|.+||.++ +..... |---.+|.|..++.||..++||.||+
T Consensus 152 keD~~rG~RRVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liI 231 (312)
T COG0549 152 KEDAGRGYRRVVPSPKPVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLII 231 (312)
T ss_pred EecCCCCeeEecCCCCCccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEE
Confidence 12223222 36788999999999999999983 333333 44468999999999999999999999
Q ss_pred eecccccC-----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccc
Q 010333 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (513)
Q Consensus 291 LTDv~gld-----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (513)
||||+.++ |+.+-+++++++|+++|+.++.
T Consensus 232 LTdVd~Vy~n~gkp~q~~L~~v~~~e~~~yl~eg~--------------------------------------------- 266 (312)
T COG0549 232 LTDVDAVYVNFGKPNQQALDRVTVDEMEKYLAEGQ--------------------------------------------- 266 (312)
T ss_pred EeccchheecCCCccchhhcccCHHHHHHHHhcCC---------------------------------------------
Confidence 99999763 6788999999999999985421
Q ss_pred cccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEec
Q 010333 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (513)
Q Consensus 366 ~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~ 445 (513)
|+.|| |.+|++||+.+++++-+++.|.+- +. +.+.+ ....||.|.+
T Consensus 267 --------------------Fa~GS---------M~PKVeAai~Fv~~~gk~A~ItsL--e~--~~~~l-~g~~GT~I~~ 312 (312)
T COG0549 267 --------------------FAAGS---------MGPKVEAAISFVENTGKPAIITSL--EN--AEAAL-EGKAGTVIVP 312 (312)
T ss_pred --------------------CCCCC---------ccHHHHHHHHHHHcCCCceEECcH--HH--HHHHh-ccCCCcEecC
Confidence 44444 999999999999999998888662 21 33443 5678999863
No 43
>PRK08210 aspartate kinase I; Reviewed
Probab=99.93 E-value=2.5e-24 Score=227.74 Aligned_cols=192 Identities=16% Similarity=0.172 Sum_probs=157.2
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEe-----CChHHHHHHHHHcCCCccccCCccCCCHHHHHHHH
Q 010333 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVP-----GTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVH-----GggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~ 172 (513)
++++||||||+++++++ ...++++|+.+...|+++|+|| ||+|++++.+..+..... +.+++..++.+
T Consensus 1 m~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~-----~~~~~~~~~~l- 74 (403)
T PRK08210 1 MKIIVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEF-----SEISKREQDLL- 74 (403)
T ss_pred CCeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhc-----cCCChHHHHHH-
Confidence 36899999999999877 7899999999999999999998 677778777765443322 34566677654
Q ss_pred HHHhHHHHH-HHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCC
Q 010333 173 EAAGGIRMM-IEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (513)
Q Consensus 173 ~a~G~l~~~-L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G 251 (513)
.++|+++.. +.+ ..|+++|++ +.++++.+..++++.+ ++ .|++..++.+.|+.+|+.|
T Consensus 75 ~~~Ge~~s~~~~~--------~~l~~~Gi~----a~~l~~~~~~~~t~~~--------~~-~~~v~~~~~~~l~~~l~~~ 133 (403)
T PRK08210 75 MSCGEIISSVVFS--------NMLNENGIK----AVALTGGQAGIITDDN--------FT-NAKIIEVNPDRILEALEEG 133 (403)
T ss_pred HhHhHHHHHHHHH--------HHHHhCCCC----eEEechHHccEEccCC--------CC-ceeeehhhHHHHHHHHhcC
Confidence 688998764 222 247889987 6888888777887653 22 3677788999999999999
Q ss_pred ceEEEcCC-ccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHH
Q 010333 252 CLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (513)
Q Consensus 252 ~IPVIspv-g~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~ 317 (513)
.|||++++ +.+.+|+++++ ++|.+|+.+|.+|+||+++|+|||+|++ +++++|++++.+|++++..
T Consensus 134 ~vpVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~ 210 (403)
T PRK08210 134 DVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAY 210 (403)
T ss_pred CEEEeeCeeecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHH
Confidence 99999996 78889999998 7999999999999999999999999973 3689999999999999864
No 44
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.92 E-value=2.2e-23 Score=204.13 Aligned_cols=236 Identities=17% Similarity=0.207 Sum_probs=168.9
Q ss_pred EEEEeCCccCCCCC---------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHH
Q 010333 102 FVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (513)
Q Consensus 102 ~VIKlGGs~l~~~~---------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~ 172 (513)
+|+|||||+|++++ +++++.+|+. ..-.++|||||||++.|...++++++ ... + +.++.....+.
T Consensus 3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~~~~-~~~-~--~~s~~G~~~~~ 76 (252)
T COG1608 3 IILKLGGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEFGLE-GLK-N--YLSPLGFSLTH 76 (252)
T ss_pred EEEEecceeeecCCCcchhhHHHHHHHHHHHhc--CCcccEEEEecCccccCHHHHHhCcc-ccc-c--ccCccchHHHH
Confidence 89999999999976 3455555553 33357999999999999999999983 111 1 22333444455
Q ss_pred HHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCc
Q 010333 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGC 252 (513)
Q Consensus 173 ~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~ 252 (513)
.++-+++..++.. |.+.|+. ++...+.+ |.+ +.|++..-..+.|+.+|+.|+
T Consensus 77 ~am~~L~~~V~~~---------l~~~Gv~----av~~~P~s--~~~-------------~~gr~~~~~l~~i~~~l~~gf 128 (252)
T COG1608 77 LAMLELNSIVVDA---------LLDAGVR----AVSVVPIS--FST-------------FNGRILYTYLEAIKDALEKGF 128 (252)
T ss_pred HHHHHHHHHHHHH---------HHhcCCc----cccccCcc--eee-------------cCCceeechHHHHHHHHHcCC
Confidence 6777888877765 5677765 22222222 221 246666667899999999999
Q ss_pred eEEEcC-CccCCCCceeecChHHHHHHHHHHcCCCEEEEeeccccc-CCCCcccccc-CHHHHHHHHHHhhhhhhHHHhH
Q 010333 253 LVILSN-LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFL-TLQEADSLIRQRVKQSEIAANY 329 (513)
Q Consensus 253 IPVIsp-vg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gl-d~~g~lI~~L-t~~Ea~~ll~~~~~~~~i~~~~ 329 (513)
|||+.+ +.++.+..+..+|+|+++.++|..|++|+++|+|||||+ +.++..++++ ...+++....-+
T Consensus 129 vPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~---------- 198 (252)
T COG1608 129 VPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALG---------- 198 (252)
T ss_pred EeeeecceEEcCCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhc----------
Confidence 999998 455555567899999999999999999999999999997 4454434343 334444432110
Q ss_pred HhhhhcccccccCCCCCCCc-cccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHH
Q 010333 330 VKAVAEEDITCFGHSDSIGS-VYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAA 408 (513)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~ 408 (513)
++.+. + || | |..||+++.
T Consensus 199 ---------------gs~~~DV------------------------TG-G---------------------i~~Kl~~~~ 217 (252)
T COG1608 199 ---------------GSGGTDV------------------------TG-G---------------------IAKKLEALL 217 (252)
T ss_pred ---------------CcCcccc------------------------hh-h---------------------HHHHHHHHH
Confidence 00001 2 46 5 999999999
Q ss_pred HHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 409 FVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 409 ~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
...+.|.. |.++|+..++. |...+.++.+||.|.
T Consensus 218 ~~~~~~~~-vyi~ng~~~~n-i~~~l~G~~vGT~I~ 251 (252)
T COG1608 218 EIARYGKE-VYIFNGNKPEN-IYRALRGENVGTRID 251 (252)
T ss_pred HHHhcCce-EEEECCCCHHH-HHHHhcCCCCceEec
Confidence 99999998 99999999998 566668899999985
No 45
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.91 E-value=5.9e-24 Score=208.88 Aligned_cols=175 Identities=21% Similarity=0.229 Sum_probs=140.6
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHhHH-
Q 010333 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI- 178 (513)
Q Consensus 101 t~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G~l- 178 (513)
++||||||+++.+++ +++++++|+.+ ..|+++|+||||++.++..+..+. .+.+.|+.
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~-------------------~~~s~Ge~~ 60 (227)
T cd04234 1 MVVQKFGGTSVASAERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA-------------------LLLSFGERL 60 (227)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH-------------------HHHHHHHHH
Confidence 479999999998876 89999999999 889999999999888777665542 34567765
Q ss_pred HHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcC-CceEEEc
Q 010333 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG-GCLVILS 257 (513)
Q Consensus 179 ~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~-G~IPVIs 257 (513)
+..+.+ ..|+++|++ +..+++.+..+.+. ++++.+++..++.+.|+++|+. |.|||++
T Consensus 61 ~~~l~~--------~~l~~~Gi~----a~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~ 119 (227)
T cd04234 61 SARLLA--------AALRDRGIK----ARSLDARQAGITTD---------DNHGAARIIEISYERLKELLAEIGKVPVVT 119 (227)
T ss_pred HHHHHH--------HHHHHCCCC----eEEeCHHHCCEEcC---------CccchhhHHHHHHHHHHHHHhhCCCEEEec
Confidence 333433 358899987 56666655333332 3334566667789999999999 9999999
Q ss_pred C-CccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHH
Q 010333 258 N-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLI 316 (513)
Q Consensus 258 p-vg~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll 316 (513)
+ ++.+.+|+++++ ++|.+|+.+|.+|+||+|+|+||++|++ +++++|++++.+|++++.
T Consensus 120 g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~ 189 (227)
T cd04234 120 GFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELA 189 (227)
T ss_pred CceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHH
Confidence 9 688889999888 7999999999999999999999999973 258999999999998875
No 46
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.91 E-value=1e-23 Score=237.64 Aligned_cols=249 Identities=17% Similarity=0.187 Sum_probs=172.2
Q ss_pred CCeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEE-EeCChHHHHHHHHHcCCCcc-ccCCccCCCHHHHH
Q 010333 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVL-VPGTHVQIDKLLSERGHEAK-YLGRYRITDSESLA 169 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVL-VHGggpqI~~~L~~~Gi~~~-~~~G~RvTd~~~L~ 169 (513)
.|++|||+||++|++++ +.+++++|+.|+..|++||| +||+..+.+..+...+.... +.+-.+.++...++
T Consensus 7 ~~~iViKiGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~~~q 86 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPELDGK 86 (715)
T ss_pred CCEEEEEeCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchHHHH
Confidence 48999999999999864 68999999999999999999 56665555555543322111 00001223333333
Q ss_pred HHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhc
Q 010333 170 AAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLD 249 (513)
Q Consensus 170 ~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd 249 (513)
+ .+++||.. |++.|+ ..|.++++. ...+ ++|.. ||.. .+.+....+.|+.+|+
T Consensus 87 a-~aa~gq~~--L~~~y~-----~~f~~~~i~----~aQ~------Llt~~--------d~~~-~~~~~~~~~~l~~lL~ 139 (715)
T TIGR01092 87 A-CAAVGQSG--LMALYE-----TMFTQLDIT----AAQI------LVTDL--------DFRD-EQFRRQLNETVHELLR 139 (715)
T ss_pred H-HHHHHHHH--HHHHHH-----HHHHHcCCe----eEEE------Eechh--------hccc-HHHHHHHHHHHHHHHH
Confidence 3 45777764 788776 468888875 2222 23321 2221 1111234689999999
Q ss_pred CCceEEEcCCcc-CCC------CceeecChHHHHHHHHHHcCCCEEEEeecccccC------CCCccccccCHHHHHHHH
Q 010333 250 GGCLVILSNLGY-SSS------GEVLNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFLTLQEADSLI 316 (513)
Q Consensus 250 ~G~IPVIspvg~-s~t------Gei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld------~~g~lI~~Lt~~Ea~~ll 316 (513)
.|.|||+++.+. ... ++-+|+|+|.+|+.+|.+|+||+|+|+|||+|++ +++++|++++..+.+..+
T Consensus 140 ~g~iPVin~nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~i 219 (715)
T TIGR01092 140 MNVVPVVNENDAVSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEI 219 (715)
T ss_pred CCCEEEEcCCCcccccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCCCCCCeEeeeecccchhhhh
Confidence 999999987322 211 1225899999999999999999999999999984 358899988755443222
Q ss_pred HHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhcc
Q 010333 317 RQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSR 396 (513)
Q Consensus 317 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~ 396 (513)
. ++..+.+++| |
T Consensus 220 ~-------------------------------------------------~~~~~~~~tG-G------------------ 231 (715)
T TIGR01092 220 T-------------------------------------------------FGTKSRLGRG-G------------------ 231 (715)
T ss_pred c-------------------------------------------------cCcccccCCC-C------------------
Confidence 1 1122334466 5
Q ss_pred ccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCC
Q 010333 397 LNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (513)
Q Consensus 397 ~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ 447 (513)
|.+||+||..|.+.|++ ++|+++..++. |.+++.++..||.|.++.
T Consensus 232 ---M~~Kl~aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~~~~~~ 277 (715)
T TIGR01092 232 ---MTAKVKAAVWAAYGGTP-VIIASGTAPKN-ITKVVEGKKVGTLFHEDA 277 (715)
T ss_pred ---chHHHHHHHHHHHCCCe-EEEeCCCCcch-HHHHhcCCCCceEecccc
Confidence 89999999999999998 99999998887 678888888999997764
No 47
>PRK06635 aspartate kinase; Reviewed
Probab=99.91 E-value=6.4e-23 Score=216.68 Aligned_cols=190 Identities=18% Similarity=0.224 Sum_probs=150.8
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHh
Q 010333 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAG 176 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGg-gpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G 176 (513)
++++||||||+++.+++ +++++++|+.+...|+++|+|||| ++.++++++....... .++++.++.+ .++|
T Consensus 1 m~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~------~~~~~~~~~~-~~~G 73 (404)
T PRK06635 1 MALIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSP------LPDPRELDML-LSTG 73 (404)
T ss_pred CCeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhcc------CCCHHHHHHH-hhhh
Confidence 36899999999999876 899999999999899999998886 6777777665432111 1256666643 4567
Q ss_pred H-HHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEE
Q 010333 177 G-IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVI 255 (513)
Q Consensus 177 ~-l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPV 255 (513)
+ ++..+.+. .|+++|++ +..+++.+..+++.. +|+ .|++..++.+.|+.+|+.|.|||
T Consensus 74 e~~~~~~~~~--------~l~~~g~~----a~~l~~~~~~~~~~~--------~~~-~~~~~~~~~~~l~~~l~~~~ipV 132 (404)
T PRK06635 74 EQVSVALLAM--------ALQSLGVK----ARSFTGWQAGIITDS--------AHG-KARITDIDPSRIREALDEGDVVV 132 (404)
T ss_pred HHHHHHHHHH--------HHHhCCCC----eEEeChhhCCEEecC--------CCC-ceEeeecCHHHHHHHHhCCCEEE
Confidence 5 44433332 58899987 677777776666654 233 47788889999999999999999
Q ss_pred EcC-CccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHH
Q 010333 256 LSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLI 316 (513)
Q Consensus 256 Isp-vg~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll 316 (513)
+++ ++.+.+|+++++ ++|.+|+.+|.+|+||+|+++|||+|++ +++++|++++.+|++++.
T Consensus 133 i~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~ 204 (404)
T PRK06635 133 VAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELA 204 (404)
T ss_pred ecCccEeCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHH
Confidence 999 688999999999 9999999999999999999999999973 368999999999988875
No 48
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.91 E-value=3.4e-23 Score=218.61 Aligned_cols=192 Identities=19% Similarity=0.207 Sum_probs=152.6
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHhHH
Q 010333 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI 178 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G~l 178 (513)
.++|+||||+++.+++ +++++++|+.++..|+++|+||||++.+...|.+++.... ..++|+.+...++ +.|+.
T Consensus 1 ~~iViK~GGs~~~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~---~~~~~~~~~~~i~--~~Ge~ 75 (401)
T TIGR00656 1 ELIVQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAI---RDAITPRERDELV--SHGER 75 (401)
T ss_pred CcEEEEECCcCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHh---ccCCChHHHHHHh--hHHHH
Confidence 3689999999999876 8999999999999999999999999888887766542100 0145655444443 44663
Q ss_pred -HHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecH-HHHHHHhcCCceEEE
Q 010333 179 -RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV-TRMRERLDGGCLVIL 256 (513)
Q Consensus 179 -~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~-~~I~~LLd~G~IPVI 256 (513)
+..+.. ..|+++|++ +.++++.+..+++..+ ++ .+++..++. +.|+++++.|.|||+
T Consensus 76 ~s~~~~~--------~~l~~~g~~----a~~l~~~~~~~~t~~~--------~~-~~~~~~~~~~~~l~~~l~~~~vpVi 134 (401)
T TIGR00656 76 LSSALFS--------GALRDLGVK----AIWLDGGEAGIITDDN--------FG-NAKIDIIATEERLLPLLEEGIIVVV 134 (401)
T ss_pred HHHHHHH--------HHHHhCCCc----eEEeccccceEEeCCC--------CC-ceEeeecchHHHHHHHHhCCCEEEe
Confidence 232332 258899988 6888888877777643 22 356778888 999999999999999
Q ss_pred cC-CccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHH
Q 010333 257 SN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (513)
Q Consensus 257 sp-vg~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~ 317 (513)
++ ++.+.+|+++++ ++|.+|+.+|.+|+||+|+++|||+|++ ++++++++++.+|+.++..
T Consensus 135 ~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~ 206 (401)
T TIGR00656 135 AGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELAT 206 (401)
T ss_pred cCcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHH
Confidence 99 688888999887 6999999999999999999999999973 3678999999999999874
No 49
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.91 E-value=4.3e-23 Score=232.56 Aligned_cols=247 Identities=17% Similarity=0.173 Sum_probs=173.6
Q ss_pred CCeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccc---cCCc-cCCCHHH
Q 010333 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKY---LGRY-RITDSES 167 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~---~~G~-RvTd~~~ 167 (513)
.|++||||||+++++++ +.+++++|+.|+..|+++|||.+|...+... .+++..+. ...+ +.+....
T Consensus 15 ~~~iViK~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~--~l~~~~~~~~~~~~~~~~~~~~~ 92 (718)
T PLN02418 15 VKRVVIKVGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQ--RLRYRRLVNSSFADLQKPQMELD 92 (718)
T ss_pred CCEEEEEeCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHH--HHhhhhhhhcccccCCCCcchHH
Confidence 57999999999999865 6889999999999999999999995444433 23322110 0000 1121212
Q ss_pred HHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHH
Q 010333 168 LAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRER 247 (513)
Q Consensus 168 L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~L 247 (513)
. .+..++||.. ++..|+ ..|+++|++ +..+-..+. ||.. .+......+.|+.+
T Consensus 93 ~-qa~aa~Gq~~--l~~~~~-----~~f~~~g~~----~~qillT~~--------------~~~~-~~~~~~~~~~l~~l 145 (718)
T PLN02418 93 G-KACAAVGQSE--LMALYD-----TLFSQLDVT----ASQLLVTDS--------------DFRD-PDFRKQLSETVESL 145 (718)
T ss_pred H-HHHHHhhHHH--HHHHHH-----HHHHHcCCe----EEEEEecHh--------------Hhcc-hhHhHhHHHHHHHH
Confidence 2 2346899976 777776 589999985 233322222 2221 11123446999999
Q ss_pred hcCCceEEEcCCccCCC-------CceeecChHHHHHHHHHHcCCCEEEEeecccccC------CCCccccccCHHHHHH
Q 010333 248 LDGGCLVILSNLGYSSS-------GEVLNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFLTLQEADS 314 (513)
Q Consensus 248 Ld~G~IPVIspvg~s~t-------Gei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld------~~g~lI~~Lt~~Ea~~ 314 (513)
|+.|.|||+++.+.-.+ +...|.|+|.+|+.+|.+++||+|+|+||++|++ +++++|++++..+.+.
T Consensus 146 l~~g~iPVv~~nd~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~~~~a~~i~~i~~~~~~~ 225 (718)
T PLN02418 146 LDLRVIPIFNENDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQD 225 (718)
T ss_pred HHCCCEEEEcCCCCccccccccccccCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCCCCCceEcceecccchhh
Confidence 99999999998532221 1236889999999999999999999999999983 2478888887544433
Q ss_pred HHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchh
Q 010333 315 LIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERL 394 (513)
Q Consensus 315 ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~ 394 (513)
.+.. +..+..++| |
T Consensus 226 ~i~~-------------------------------------------------~~~s~~~tG-G---------------- 239 (718)
T PLN02418 226 EITF-------------------------------------------------GEKSRVGRG-G---------------- 239 (718)
T ss_pred hhhc-------------------------------------------------ccccccCCC-C----------------
Confidence 2211 112233466 5
Q ss_pred ccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCC
Q 010333 395 SRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (513)
Q Consensus 395 ~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ 447 (513)
|.+||+||..|.++|++ ++|++|..++. |.++++++..||.|.++.
T Consensus 240 -----M~~Kl~Aa~~a~~~Gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~~ 285 (718)
T PLN02418 240 -----MTAKVKAAVNAASAGIP-VVITSGYALDN-IRKVLRGERVGTLFHQDA 285 (718)
T ss_pred -----cHHHHHHHHHHHHCCCc-EEEeCCCCcch-HHHHhcCCCCceEecccc
Confidence 89999999999999998 89999999987 677888888999998765
No 50
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.90 E-value=6.6e-22 Score=194.33 Aligned_cols=215 Identities=19% Similarity=0.179 Sum_probs=151.4
Q ss_pred CeEEEEeCCccCCCC-----C---hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH-cCCCccccCCccCCCHHHHHH
Q 010333 100 GTFVVIISGEIVSSP-----Y---LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSE-RGHEAKYLGRYRITDSESLAA 170 (513)
Q Consensus 100 kt~VIKlGGs~l~~~-----~---l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~-~Gi~~~~~~G~RvTd~~~L~~ 170 (513)
+++||||||++++++ + +.+++++|+.++..|+++|||||||++++..-.. .++ +..+++.
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~~~~~-----------~~~~~~~ 69 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGM-----------DRATADY 69 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHhhcCC-----------ChhhHHH
Confidence 579999999999843 2 6889999999999999999999998876654321 222 2234444
Q ss_pred HHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcC
Q 010333 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (513)
Q Consensus 171 a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~ 250 (513)
...+..+++..+++. .|+++|++. . ++++.. +++.+. ....+.++++|++
T Consensus 70 ~~~~~~~l~~~ll~~--------~l~~~Gi~a----~--------~~~~~~--------~~~~~~--~~~~~~~~~~l~~ 119 (231)
T PRK00358 70 MGMLATVMNALALQD--------ALERAGVDT----R--------VQSAIP--------MPQVAE--PYIRRRAIRHLEK 119 (231)
T ss_pred HHHHHHHHHHHHHHH--------HHHHcCCCe----E--------Eechhh--------cccccC--cccHHHHHHHHHC
Confidence 433455666644432 578888862 2 111111 111111 1235678899999
Q ss_pred CceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhhh
Q 010333 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQS 323 (513)
Q Consensus 251 G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~~ 323 (513)
|.|||+++-. |. -..++|.+|+.+|.+|+||+|+|+|||+|++ +++++|++++.+|+.++ +.
T Consensus 120 g~vPVv~g~~----~~-~~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~---g~--- 188 (231)
T PRK00358 120 GRVVIFAAGT----GN-PFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEK---GL--- 188 (231)
T ss_pred CCEEEEECCC----CC-CCCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHc---CC---
Confidence 9999997522 22 1358999999999999999999999999973 36899999987653222 11
Q ss_pred hHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHH
Q 010333 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (513)
Q Consensus 324 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~K 403 (513)
...+
T Consensus 189 ----------------------------------------------------------------------------~~~d 192 (231)
T PRK00358 189 ----------------------------------------------------------------------------KVMD 192 (231)
T ss_pred ----------------------------------------------------------------------------cchh
Confidence 1125
Q ss_pred HHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 404 L~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
+.++..|.+.|++ ++|+|+..++. |..++.++..||.|.
T Consensus 193 ~~a~~~a~~~~i~-v~I~~g~~~~~-l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 193 ATAISLARDNKIP-IIVFNMNKPGN-LKRVVKGEHIGTLVS 231 (231)
T ss_pred HHHHHHHHHcCCc-EEEECCCCchH-HHHHHCCCCCCEEeC
Confidence 6778888899997 89999999987 567778888999984
No 51
>PRK08841 aspartate kinase; Validated
Probab=99.89 E-value=1.4e-21 Score=206.62 Aligned_cols=191 Identities=18% Similarity=0.235 Sum_probs=150.6
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHhHH
Q 010333 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI 178 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G~l 178 (513)
+++|+||||+++.+++ ++.++++|+.++..|.++|+||||++.....+..+.... .+++++++++.+ .+.|+.
T Consensus 2 ~~~V~KfGGtsv~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~-----~~~~~~~~~d~l-~s~GE~ 75 (392)
T PRK08841 2 PLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQV-----DSVPTARELDVL-LSAGEQ 75 (392)
T ss_pred CeEEEeECcccCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhh-----ccCCCHHHHHHH-HHHHHH
Confidence 5799999999999876 899999999999999999999999874444443333221 156777788765 456765
Q ss_pred H-HHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEc
Q 010333 179 R-MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILS 257 (513)
Q Consensus 179 ~-~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIs 257 (513)
. ..+.+ ..|++.|++ +..+++.+..+++.. .+ ..+++..++.+.|+++++.|.|||++
T Consensus 76 ~s~~lla--------~~L~~~Gi~----a~~l~~~~~~i~t~~--------~~-~~~~i~~~~~~~i~~ll~~~~vpVv~ 134 (392)
T PRK08841 76 VSMALLA--------MTLNKLGYA----ARSLTGAQANIVTDN--------QH-NDATIKHIDTSTITELLEQDQIVIVA 134 (392)
T ss_pred HHHHHHH--------HHHHhCCCC----eEEEehhHcCEEecC--------CC-CCceechhhHHHHHHHHhCCCEEEEe
Confidence 3 22333 358889987 677777665555532 12 24777778899999999999999999
Q ss_pred CC-ccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCccccccCHHHHHHHHH
Q 010333 258 NL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIR 317 (513)
Q Consensus 258 pv-g~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gl---d----~~g~lI~~Lt~~Ea~~ll~ 317 (513)
+. |.+.+|++.++ ++|.+|+.+|.+|+||.++++|||+|+ | ++++++++++.+|+.++..
T Consensus 135 Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~ 205 (392)
T PRK08841 135 GFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMAR 205 (392)
T ss_pred CCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHh
Confidence 94 88899999998 999999999999999999999999997 3 3589999999999888863
No 52
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.89 E-value=1.3e-21 Score=192.20 Aligned_cols=214 Identities=19% Similarity=0.187 Sum_probs=151.2
Q ss_pred eEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCChHHH-HHHHHHcCCCccccCCccCCCHHHHHHHH
Q 010333 101 TFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQI-DKLLSERGHEAKYLGRYRITDSESLAAAM 172 (513)
Q Consensus 101 t~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGggpqI-~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~ 172 (513)
++||||||+++++++ ++++++.|+.+...|.++|||||||.+. +.....+++. +..++...
T Consensus 1 ~iViKiGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~~~~~-----------~~~~~~~~ 69 (229)
T cd04239 1 RIVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMP-----------RATADYIG 69 (229)
T ss_pred CEEEEECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhhcCCC-----------hhhHHHHH
Confidence 479999999999852 6788999998888899999999988753 3222232322 11233222
Q ss_pred HHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCc
Q 010333 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGC 252 (513)
Q Consensus 173 ~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~ 252 (513)
.+.-+++..+++. .|.++|++ +..++..+ +. ......+.+.++.+|+.|.
T Consensus 70 ~~~~~l~~~l~~~--------~l~~~Gi~----a~~~~~~~----------------~~--~~~~~~~~~~l~~~l~~g~ 119 (229)
T cd04239 70 MLATVMNALALQD--------ALEKLGVK----TRVMSAIP----------------MQ--GVAEPYIRRRAIRHLEKGR 119 (229)
T ss_pred HHHHHHHHHHHHH--------HHHHcCCC----EEEeCHHH----------------Hh--hhhccccHHHHHHHHhCCC
Confidence 2233455556543 57888887 33333221 00 0012347888999999999
Q ss_pred eEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC---C----CCccccccCHHHHHHHHHHhhhhhhH
Q 010333 253 LVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIRQRVKQSEI 325 (513)
Q Consensus 253 IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld---~----~g~lI~~Lt~~Ea~~ll~~~~~~~~i 325 (513)
|||+++.. |. ...++|.+|+.+|.+|+||+|+|+|||+|++ | ++++|++++.+|+.++..
T Consensus 120 ipVi~g~~----g~-~~~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~-------- 186 (229)
T cd04239 120 IVIFGGGT----GN-PGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL-------- 186 (229)
T ss_pred EEEEeCcc----CC-CCCCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhc--------
Confidence 99999764 32 2358999999999999999999999999983 2 589999999877655421
Q ss_pred HHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHH
Q 010333 326 AANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELA 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~ 405 (513)
+..+..
T Consensus 187 --------------------------------------------------------------------------~~~~~~ 192 (229)
T cd04239 187 --------------------------------------------------------------------------KVMDAT 192 (229)
T ss_pred --------------------------------------------------------------------------CCccHH
Confidence 112345
Q ss_pred HHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 406 AAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 406 AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
++..+.+.|++ ++|+++..++. |.+++.+++.||.|.
T Consensus 193 a~~~~~~~~i~-v~I~~g~~~~~-l~~~l~g~~~GT~i~ 229 (229)
T cd04239 193 ALTLCRRNKIP-IIVFNGLKPGN-LLRALKGEHVGTLIE 229 (229)
T ss_pred HHHHHHHCCCe-EEEECCCChhH-HHHHHcCCCCCeEeC
Confidence 66678888986 89999999988 577888888999883
No 53
>PRK07431 aspartate kinase; Provisional
Probab=99.89 E-value=2.1e-21 Score=214.63 Aligned_cols=187 Identities=19% Similarity=0.245 Sum_probs=143.9
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCH---HHHHHHHHHH
Q 010333 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDS---ESLAAAMEAA 175 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~---~~L~~a~~a~ 175 (513)
+++|+||||+++.+++ +++++++|+.+...|+++||||||+..+...|.+++. ++|+. ..++.+ .+.
T Consensus 2 ~~iViKfGGss~~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~--------~~t~~~~~~~~~~~-ls~ 72 (587)
T PRK07431 2 ALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAK--------EISSNPPRREMDML-LST 72 (587)
T ss_pred CeEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHH--------HhccCCCHHHHHHH-HHH
Confidence 5799999999998876 8999999999999999999999964444434434431 22322 233333 344
Q ss_pred hH-HHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceE
Q 010333 176 GG-IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLV 254 (513)
Q Consensus 176 G~-l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IP 254 (513)
|+ ++..+.+. .|+++|++ +.++++.+..+++... ++ .|++..++.+.|+++|+.|.||
T Consensus 73 Ge~~s~~l~~~--------~l~~~gi~----a~~l~~~~~~~~~~~~--------~~-~~~i~~~~~~~l~~~l~~g~vp 131 (587)
T PRK07431 73 GEQVSIALLSM--------ALHELGQP----AISLTGAQVGIVTESE--------HG-RARILEIKTDRIQRHLDAGKVV 131 (587)
T ss_pred hHHHHHHHHHH--------HHHHCCCC----eEEechhHcCeEecCC--------CC-ceeeeeccHHHHHHHHhCCCeE
Confidence 54 45555543 48899988 6888887776776542 33 3788888999999999999999
Q ss_pred EEcCC-ccC--CCCceeec---ChHHHHHHHHHHcCCCEEEEeecccccC---C----CCccccccCHHHHHHHH
Q 010333 255 ILSNL-GYS--SSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLI 316 (513)
Q Consensus 255 VIspv-g~s--~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld---~----~g~lI~~Lt~~Ea~~ll 316 (513)
|+++. |.. ..|++.++ ++|.+|+.+|.+|+||+++++|||+|++ | ++++|++++.+|+.++.
T Consensus 132 Vv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~ 206 (587)
T PRK07431 132 VVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELA 206 (587)
T ss_pred EecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHH
Confidence 99984 543 45888876 9999999999999999999999999974 3 58999999999998886
No 54
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.87 E-value=8.8e-21 Score=190.73 Aligned_cols=212 Identities=21% Similarity=0.247 Sum_probs=148.1
Q ss_pred CeEEEEeCCccCCCCC---hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH---HcCCCccccCCccCCCHHHHHHHHH
Q 010333 100 GTFVVIISGEIVSSPY---LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLS---ERGHEAKYLGRYRITDSESLAAAME 173 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~---l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~---~~Gi~~~~~~G~RvTd~~~L~~a~~ 173 (513)
..+|||||||++++++ +.+++++|+.++. +++++||||||.+.+...+ ..|++ ...++....
T Consensus 31 ~~~ViKiGGSvitdk~~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~-----------~~~~~~~~~ 98 (262)
T cd04255 31 DLNVVKIGGQSIIDRGAEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMP-----------TGVLAKLGA 98 (262)
T ss_pred CcEEEEeccceecCCcHHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCC-----------chHHHHHHH
Confidence 3599999999999875 7889999999876 7899999999998753221 23332 122322222
Q ss_pred HHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCce
Q 010333 174 AAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCL 253 (513)
Q Consensus 174 a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~I 253 (513)
++..+|..+... .|..+|++ + +...+.+.++.+|+.|.|
T Consensus 99 aa~~ln~lv~~~--------~l~~~g~~----~-----------------------------i~~~~~~~l~~lL~~g~v 137 (262)
T cd04255 99 SVSEQNAEMLAT--------LLAKHGGS----K-----------------------------VGHGDLLQLPTFLKAGRA 137 (262)
T ss_pred HHHHHHHHHHHH--------HHHHcCCC----c-----------------------------cccccHHHHHHHHHCCCe
Confidence 344444444422 34556654 1 112345679999999999
Q ss_pred EEEcCCc---c----CCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHh
Q 010333 254 VILSNLG---Y----SSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQR 319 (513)
Q Consensus 254 PVIspvg---~----s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~ 319 (513)
||+++.. . +..|...+.|+|++|+.+|.+|+||+|+++||++|++ +++++|++++.+++.++...
T Consensus 138 PVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~- 216 (262)
T cd04255 138 PVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLD- 216 (262)
T ss_pred EEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcC-
Confidence 9999862 2 2335567999999999999999999999999999973 36899999997665444200
Q ss_pred hhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccC
Q 010333 320 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 399 (513)
Q Consensus 320 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~ 399 (513)
. ..+ +| +
T Consensus 217 ~--------------------------------------------------~~~-~~-~--------------------- 223 (262)
T cd04255 217 D--------------------------------------------------LVL-ER-P--------------------- 223 (262)
T ss_pred C--------------------------------------------------CCC-cH-H---------------------
Confidence 0 000 12 2
Q ss_pred cHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 400 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 400 m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
|.+|+++| .++..++|+|++.++. |.+++.++..||.|.
T Consensus 224 ~~~~l~aa-----~~~~~v~I~~g~~~~~-L~~~l~g~~~GT~i~ 262 (262)
T cd04255 224 VLDLLQNA-----RHVKEVQIVNGLVPGN-LTRALRGEHVGTIIR 262 (262)
T ss_pred HHHHHHHh-----CCCCcEEEEeCCCCCH-HHHHHcCCCCceEeC
Confidence 77777765 2333599999999987 678888888999983
No 55
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.87 E-value=6.4e-21 Score=187.88 Aligned_cols=216 Identities=20% Similarity=0.204 Sum_probs=149.9
Q ss_pred CeEEEEeCCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHH
Q 010333 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~--------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a 171 (513)
|++||||||+++++++ +.+++++|+.+...|.++|||||||+++ .+.+.+..++.|.++ +.+
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~------~~~~~~~~~~~~~~~----d~~ 70 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIF------RGASAAEAGMDRATA----DYM 70 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCccc------ccchhhhcCCCchhh----hHH
Confidence 5799999999998542 6789999998888899999999999764 122222223334332 222
Q ss_pred HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCC
Q 010333 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (513)
Q Consensus 172 ~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G 251 (513)
.....+++..+.. ..|+++|++ +..+++.+ +.+.+ ..++.+.++.+|+.|
T Consensus 71 g~~~~~~n~~ll~--------~~L~~~Gv~----a~~l~~~~----------------~~~~~--~~~~~~~l~~~l~~g 120 (231)
T cd04254 71 GMLATVINALALQ--------DALESLGVK----TRVMSAIP----------------MQGVA--EPYIRRRAIRHLEKG 120 (231)
T ss_pred HHHHHHHHHHHHH--------HHHHHcCCC----eEEEcHHH----------------hhhhh--cccCHHHHHHHHHCC
Confidence 1234455553333 247888876 33333322 11111 246789999999999
Q ss_pred ceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhhhh
Q 010333 252 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSE 324 (513)
Q Consensus 252 ~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~~~ 324 (513)
.|||++.. .|. ..+++|.+|+.+|.+|+||+++|+|||+|++ ++++++++++.+|+.+. +.
T Consensus 121 ~ipV~~g~----~G~-~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~---~~---- 188 (231)
T cd04254 121 RVVIFAGG----TGN-PFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GL---- 188 (231)
T ss_pred CEEEEECC----cCC-CCCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhc---ch----
Confidence 99999832 232 2458999999999999999999999999973 25788999987665321 10
Q ss_pred HHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHH
Q 010333 325 IAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSEL 404 (513)
Q Consensus 325 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL 404 (513)
..-++
T Consensus 189 ---------------------------------------------------------------------------~~~d~ 193 (231)
T cd04254 189 ---------------------------------------------------------------------------KVMDA 193 (231)
T ss_pred ---------------------------------------------------------------------------hhhHH
Confidence 01246
Q ss_pred HHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 405 AAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 405 ~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
.++..|.+.|++ ++|+++..++.| ..++.++..||.|+
T Consensus 194 ~a~~~a~~~gi~-~~I~~g~~~~~l-~~~l~g~~~GT~i~ 231 (231)
T cd04254 194 TAFTLCRDNNLP-IVVFNINEPGNL-LKAVKGEGVGTLIS 231 (231)
T ss_pred HHHHHHHHCCCe-EEEEeCCCccHH-HHHHCCCCCCEEeC
Confidence 677778889997 899999999984 56667778999984
No 56
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.86 E-value=4.9e-20 Score=181.47 Aligned_cols=215 Identities=20% Similarity=0.221 Sum_probs=147.4
Q ss_pred CeEEEEeCCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHH
Q 010333 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~--------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a 171 (513)
|++|||+|||+|++++ +..++++|+.++..|+++|||||||.... .....+ .+ ....+.
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~-g~~~~~----------~~-~~~~d~- 67 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFR-GVELKE----------LS-PTRADQ- 67 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHH-HHhccC----------CC-hHHHHH-
Confidence 5799999999998763 57899999999999999999999887533 111111 12 222222
Q ss_pred HHHHhHHHHHHHHh-hCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcC
Q 010333 172 MEAAGGIRMMIEAK-LSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (513)
Q Consensus 172 ~~a~G~l~~~L~a~-Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~ 250 (513)
+|+....+-+. +. ..|.++|++ ++.+.. ++.. +.+...+.+.++.+|+.
T Consensus 68 ---ig~~~~~ln~~~~~-----~~l~~~gi~----a~~~~~----~~~~--------------~~~~~~~~~~i~~ll~~ 117 (231)
T PRK14558 68 ---IGMLGTVINALYLK-----DIFEKSGLK----AVIVSQ----IVNL--------------PSVEPINYDDIELYFRA 117 (231)
T ss_pred ---HHHHHHHHHHHHHH-----HHHHHcCCC----eEEecc----cccc--------------chhhhhhHHHHHHHHHC
Confidence 23322112111 11 357888987 333221 1110 11123457999999999
Q ss_pred CceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhhh
Q 010333 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQS 323 (513)
Q Consensus 251 G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~~ 323 (513)
|.|||+++.. | .-++++|.+|+.+|..|+||.++++|||+|++ ++++++++++.+|+.++ +.
T Consensus 118 g~vpV~~G~~----~-~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~---g~--- 186 (231)
T PRK14558 118 GYIVIFAGGT----S-NPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GL--- 186 (231)
T ss_pred CCEEEEECCC----C-CCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc---Cc---
Confidence 9999999742 1 23568999999999999999999999999973 35899999987665432 11
Q ss_pred hHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHH
Q 010333 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (513)
Q Consensus 324 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~K 403 (513)
. . | +
T Consensus 187 ----------------------------------------------------~-~---------------------~--d 190 (231)
T PRK14558 187 ----------------------------------------------------K-V---------------------M--D 190 (231)
T ss_pred ----------------------------------------------------c-c---------------------c--c
Confidence 0 1 2 2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecC
Q 010333 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (513)
Q Consensus 404 L~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d 446 (513)
..++..|.+.|++ ++|+|+..++.| ..++.++..||.|.++
T Consensus 191 ~~a~~~a~~~gi~-v~I~ng~~~~~l-~~~l~g~~~GT~i~~~ 231 (231)
T PRK14558 191 TEAFSICKKYGIT-ILVINFFEPGNL-LKALKGENVGTLVVPD 231 (231)
T ss_pred HHHHHHHHHCCCC-EEEEeCCCCCHH-HHHHCCCCCcEEeCCC
Confidence 4566777789998 899999999985 4566777899999764
No 57
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.85 E-value=1.6e-20 Score=200.94 Aligned_cols=196 Identities=17% Similarity=0.189 Sum_probs=148.1
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCc-------------------
Q 010333 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRY------------------- 160 (513)
Q Consensus 101 t~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~------------------- 160 (513)
++|+||||+.+.+++ +.++++.|......|+++|+|||+.+.++..|.+......+..+.
T Consensus 2 ~~V~KFGGssv~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 81 (441)
T TIGR00657 2 LIVQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIEILERLIP 81 (441)
T ss_pred CEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhh
Confidence 589999999999976 889999998877889999999999888888887665443322210
Q ss_pred --------cCCCHH--------HHHHHHHHHh-HHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeecc
Q 010333 161 --------RITDSE--------SLAAAMEAAG-GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKG 223 (513)
Q Consensus 161 --------RvTd~~--------~L~~a~~a~G-~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~G 223 (513)
|.++.. ..+. ..+.| ++...+++ ..|+++|++ ++++++.+..+++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~-ils~GE~~s~~l~~--------~~l~~~Gi~----a~~l~~~~~~l~t~~~-- 146 (441)
T TIGR00657 82 QAIAEELKRLLDAELVLEEKPREMDR-ILSFGERLSAALLS--------AALEELGVK----AVSLLGGEAGILTDSN-- 146 (441)
T ss_pred HHHHHHHHHHHHHHHhhhcCcchHhh-eecHHHHHHHHHHH--------HHHHhCCCC----CEEEEcCcceEEecCC--
Confidence 000000 0011 12445 33333333 368899987 6888888877887652
Q ss_pred ccccccCcccceEEEecHHHHHHHhcCCceEEEcC-CccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeecccccC-
Q 010333 224 VVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD- 298 (513)
Q Consensus 224 vidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIsp-vg~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld- 298 (513)
|+....+..++.+.|+.+|+.|.|||+++ +|.+.+|++.++ ++|.+|+.+|.+|+||+|+++|||+|++
T Consensus 147 ------~~~~~~~~~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~ 220 (441)
T TIGR00657 147 ------FGRARVIIEILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYT 220 (441)
T ss_pred ------CCceeecHhhhHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCc
Confidence 32222355678899999999999999999 588889999887 8999999999999999999999999983
Q ss_pred --C----CCccccccCHHHHHHHHH
Q 010333 299 --E----SGHLIRFLTLQEADSLIR 317 (513)
Q Consensus 299 --~----~g~lI~~Lt~~Ea~~ll~ 317 (513)
| +++++++++.+|+.++..
T Consensus 221 ~DP~~~~~a~~i~~is~~ea~el~~ 245 (441)
T TIGR00657 221 TDPRIVPDARRIDEISYEEMLELAS 245 (441)
T ss_pred CCCCCCCCCeECCccCHHHHHHHHh
Confidence 3 589999999999988864
No 58
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.84 E-value=1.7e-19 Score=178.08 Aligned_cols=215 Identities=20% Similarity=0.186 Sum_probs=147.3
Q ss_pred CeEEEEeCCccCCCC-----C---hHHHHHHHHHHHhCCCeEEEEeCChHHHHHH-HHHcCCCccccCCccCCCHHHHHH
Q 010333 100 GTFVVIISGEIVSSP-----Y---LDPILKDIAFLHHLGIRFVLVPGTHVQIDKL-LSERGHEAKYLGRYRITDSESLAA 170 (513)
Q Consensus 100 kt~VIKlGGs~l~~~-----~---l~~l~~dIA~L~~lGirvVLVHGggpqI~~~-L~~~Gi~~~~~~G~RvTd~~~L~~ 170 (513)
|++||||||++|+++ + +.++++.|+.+...|+++|||||+|++.... .++++.... ....+..
T Consensus 2 ~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~a~~~~~~~~--------~~d~~g~ 73 (233)
T TIGR02075 2 KRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKELGIDRV--------TADYMGM 73 (233)
T ss_pred CEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHHHHhcCCCCc--------cHHHHHH
Confidence 689999999999852 1 6788999998888899999999998753322 345553321 1111211
Q ss_pred HHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcC
Q 010333 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (513)
Q Consensus 171 a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~ 250 (513)
. .-+++..++. ..|.++|++ +..++..+ +. ......+.+.++++|++
T Consensus 74 ~---~~~l~~~l~~--------~~L~~~Gi~----a~~l~~~~----------------~~--~~~~~~~~~~i~~ll~~ 120 (233)
T TIGR02075 74 L---ATVINGLALR--------DALEKLGVK----TRVLSAIS----------------MP--QICESYIRRKAIKHLEK 120 (233)
T ss_pred H---HHHHHHHHHH--------HHHHhCCCC----cEEecccc----------------CC--CCccccCHHHHHHHHHC
Confidence 1 1123333322 257888887 34443322 10 00012346899999999
Q ss_pred CceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeec-ccccC-------CCCccccccCHHHHHHHHHHhhhh
Q 010333 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPILD-------ESGHLIRFLTLQEADSLIRQRVKQ 322 (513)
Q Consensus 251 G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTD-v~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~ 322 (513)
|.|||++.. .| ...+++|.+|+.+|..|+||+|+|+|| |+|++ ++++++++++.+|+... +.
T Consensus 121 g~VpV~~g~----~g-~~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~---~~-- 190 (233)
T TIGR02075 121 GKVVIFSGG----TG-NPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---NL-- 190 (233)
T ss_pred CCEEEEECC----CC-CCCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc---CH--
Confidence 999998743 12 235789999999999999999999999 99973 35789999987664321 10
Q ss_pred hhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHH
Q 010333 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 402 (513)
Q Consensus 323 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~ 402 (513)
...
T Consensus 191 -----------------------------------------------------------------------------~~~ 193 (233)
T TIGR02075 191 -----------------------------------------------------------------------------KVM 193 (233)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 012
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 403 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 403 KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
++.++..|.+.|++ ++|+++..++. |..++.++..||.|+
T Consensus 194 d~~~~~~a~~~~i~-v~i~~g~~~~~-l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 194 DLTAFALARDNNLP-IVVFNIDEPGA-LKKVILGKGIGTLVS 233 (233)
T ss_pred HHHHHHHHHHCCCe-EEEEeCCCcch-HHHHHCCCCCCEEeC
Confidence 35677778888997 89999999987 456667888999984
No 59
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.83 E-value=4.8e-19 Score=173.35 Aligned_cols=210 Identities=16% Similarity=0.150 Sum_probs=146.3
Q ss_pred eEEEEeCCccCCCC---C-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHh
Q 010333 101 TFVVIISGEIVSSP---Y-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAG 176 (513)
Q Consensus 101 t~VIKlGGs~l~~~---~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G 176 (513)
++||||||++++++ + +.++++.|+.+.. |.++|||||||++.+.+.+...- +.. +...++..-...-
T Consensus 1 ~iViKlGGs~l~~~~~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~-------~~~-~~~~~d~~g~~~~ 71 (221)
T cd04253 1 RIVISLGGSVLAPEKDADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARK-------LGA-SEAFLDEIGIMAT 71 (221)
T ss_pred CEEEEeccceeCCCCChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHH-------cCC-CHHHHHHhcCHHH
Confidence 47999999999874 2 6788888887765 78999999999987765432210 001 1112232211223
Q ss_pred HHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEE
Q 010333 177 GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVIL 256 (513)
Q Consensus 177 ~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVI 256 (513)
++|..+++.+ ..+|++ ++ .++.+.+.++|+.|.|||+
T Consensus 72 ~ln~~~~~~~---------l~~~~~----~~------------------------------~~~~~~~~~~l~~g~vpv~ 108 (221)
T cd04253 72 RLNARLLIAA---------LGDAYP----PV------------------------------PTSYEEALEAMFTGKIVVM 108 (221)
T ss_pred HHHHHHHHHH---------HhcCCC----cC------------------------------CCCHHHHHHHHHcCCeEEE
Confidence 5555554432 223332 11 1145677899999999999
Q ss_pred cCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhhhhHHHhH
Q 010333 257 SNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANY 329 (513)
Q Consensus 257 spvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~ 329 (513)
.+.. + ++++|.+|+.+|.+|+||+|+++|||+|++ +++++|++++.+|+.++....
T Consensus 109 ~G~~--~-----~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~---------- 171 (221)
T cd04253 109 GGTE--P-----GQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKS---------- 171 (221)
T ss_pred ECCC--C-----CCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCC----------
Confidence 9742 1 358899999999999999999999999973 248999999988877764210
Q ss_pred HhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHH
Q 010333 330 VKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAF 409 (513)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~ 409 (513)
.+..|++ |..++.++..
T Consensus 172 ------------------------------------------~~~~g~~---------------------~~~d~~a~~~ 188 (221)
T cd04253 172 ------------------------------------------SWKAGSN---------------------EPFDPLAAKI 188 (221)
T ss_pred ------------------------------------------CcCCCCC---------------------cchHHHHHHH
Confidence 0112211 4567888888
Q ss_pred HHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 410 VCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 410 A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
+.+.|++ ++|+++..++. |.++++++..||.|.
T Consensus 189 ~~~~gi~-~~I~~g~~p~~-l~~~l~g~~~GT~I~ 221 (221)
T cd04253 189 IERSGIK-TIVVDGRDPEN-LERALKGEFVGTIIE 221 (221)
T ss_pred HHHCCCe-EEEECCCCccH-HHHHHCCCCCCeEeC
Confidence 9999997 89999999987 677888888999983
No 60
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.83 E-value=5.2e-19 Score=172.88 Aligned_cols=210 Identities=16% Similarity=0.156 Sum_probs=144.3
Q ss_pred EEEEeCCccCCCC---C-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHhH
Q 010333 102 FVVIISGEIVSSP---Y-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGG 177 (513)
Q Consensus 102 ~VIKlGGs~l~~~---~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G~ 177 (513)
+||||||++++++ + +.++++.|+.++.. +++|||||||......++. ..++ .. +...++..-...-+
T Consensus 1 iViKlGGs~l~~~~~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~---~~~~----~~-~~~~~~~~g~~~~~ 71 (221)
T TIGR02076 1 IVISLGGSVLSPEIDAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGV---AREL----GA-SETFLDEIGIDATR 71 (221)
T ss_pred CEEEechhhcCCCCCHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHH---HHHc----CC-CHHHHHHhhhHHHH
Confidence 5999999999985 2 78889999988766 8999999999876543321 1111 01 22233332222345
Q ss_pred HHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEc
Q 010333 178 IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILS 257 (513)
Q Consensus 178 l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIs 257 (513)
+|..+.+. .|...+++. + + .+.....++|+.|.|||+.
T Consensus 72 ln~~~l~~--------ll~~~~~~~----~-------------~-----------------~~~~~~~~~l~~g~ipv~~ 109 (221)
T TIGR02076 72 LNAMLLIA--------ALGDDAYPK----V-------------P-----------------ENFEEALEAMSLGKIVVMG 109 (221)
T ss_pred HHHHHHHH--------HHHhcCCCC----c-------------C-----------------CCHHHHHHHHHcCCEEEEc
Confidence 66555443 233334331 0 0 1223446778889999998
Q ss_pred CCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhhhhHHHhHH
Q 010333 258 NLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYV 330 (513)
Q Consensus 258 pvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~ 330 (513)
+.. + .+++|.+|+.+|.+|+||+|+|+|||+|++ +++++|++++.+|+.++..++
T Consensus 110 G~~--~-----~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~----------- 171 (221)
T TIGR02076 110 GTH--P-----GHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSS----------- 171 (221)
T ss_pred CCC--C-----CCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCC-----------
Confidence 642 1 368999999999999999999999999973 368999999988877764210
Q ss_pred hhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHH
Q 010333 331 KAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFV 410 (513)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A 410 (513)
.+++|.+ |..|+.++..+
T Consensus 172 -----------------------------------------~~~~g~~---------------------~~~~~~a~~~~ 189 (221)
T TIGR02076 172 -----------------------------------------SVKAGSN---------------------EVVDPLAAKII 189 (221)
T ss_pred -----------------------------------------CccCCCC---------------------ceeHHHHHHHH
Confidence 1223311 56678888888
Q ss_pred HHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 411 CRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 411 ~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
.+.|++ ++|+++..++.|+ .++.++..||.|.
T Consensus 190 ~~~~i~-v~I~~g~~~~~l~-~~l~g~~~GT~i~ 221 (221)
T TIGR02076 190 ERSKIR-TIVVNGRDPENLE-KVLKGEHVGTIIE 221 (221)
T ss_pred HHCCCc-EEEECCCCccHHH-HHHCCCCCCeEeC
Confidence 888886 8999999999855 5677788999983
No 61
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.77 E-value=1.2e-17 Score=162.14 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=103.1
Q ss_pred EEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH---HHcCCCccccCCccCCCHHHHHHHHHHHhHHH
Q 010333 103 VVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLL---SERGHEAKYLGRYRITDSESLAAAMEAAGGIR 179 (513)
Q Consensus 103 VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L---~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G~l~ 179 (513)
|||+|||.+.+ ...+.+.+..+. |.+++||.|||++.+..- ++.|++ ..+.+..-..+-.+|
T Consensus 1 vvKiGGsl~~~--~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~~~~g~~-----------~~~ad~mgilat~~n 65 (203)
T cd04240 1 VVKIGGSLIRE--AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQERKGLS-----------DAAAHWMAILAMEQY 65 (203)
T ss_pred CEEEccccccc--HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHHHHcCCC-----------hHHHHHHHHHHHHHH
Confidence 79999999865 556666665553 899999999999965442 333332 222222111222222
Q ss_pred HHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEcCC
Q 010333 180 MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL 259 (513)
Q Consensus 180 ~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIspv 259 (513)
-.+.+.+ . + + .+ --+...+..++..|.|||+.|.
T Consensus 66 a~~l~~~------------~-~-------------------~-----------~~---~~~~~~~~~~~~~g~ipV~~P~ 99 (203)
T cd04240 66 GYLLADL------------E-P-------------------R-----------LV---ARTLAELTDVLERGKIAILLPY 99 (203)
T ss_pred HHHHhcc------------C-C-------------------c-----------cc---cCCHHHHHHHHHCCCcEEEeCc
Confidence 2221110 0 0 0 00 1135788899999999999998
Q ss_pred cc----CCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-CCCccccccCHHHH
Q 010333 260 GY----SSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEA 312 (513)
Q Consensus 260 g~----s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-~~g~lI~~Lt~~Ea 312 (513)
++ +..++.+|+|+|.+|+++|.+|+||+||++|||+|++ .+++++++++..|+
T Consensus 100 ~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~da~~i~~i~~~e~ 157 (203)
T cd04240 100 RLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKDGKLVNEIAAAEL 157 (203)
T ss_pred hhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCCCcCccccCHHHh
Confidence 76 5567889999999999999999999999999999984 56999999986554
No 62
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.77 E-value=9.1e-17 Score=160.50 Aligned_cols=217 Identities=18% Similarity=0.184 Sum_probs=146.2
Q ss_pred CeEEEEeCCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCChHHH-HHHHHHcCCCccccCCccCCCHHHHHH
Q 010333 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQI-DKLLSERGHEAKYLGRYRITDSESLAA 170 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~--------l~~l~~dIA~L~~lGirvVLVHGggpqI-~~~L~~~Gi~~~~~~G~RvTd~~~L~~ 170 (513)
|++||||||+++.+++ +..+++.|+.+...|+++|||||||... ....++.++. ...++.
T Consensus 5 ~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~~a~~~~~~-----------~~~~D~ 73 (247)
T PRK14557 5 KRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGID-----------RVEADN 73 (247)
T ss_pred cEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHhcCCC-----------hHHHHH
Confidence 7899999999998742 6788999998888999999999998532 3344454432 223343
Q ss_pred HHHHHhHHHHHHHHhhCCCCchhhHHhc-CCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhc
Q 010333 171 AMEAAGGIRMMIEAKLSPGPPICNIRRH-GDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLD 249 (513)
Q Consensus 171 a~~a~G~l~~~L~a~Ls~g~~i~~L~~~-Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd 249 (513)
+-...-++|..+.+. .|+.. +.. ++ +++..+ +......++...+...|+
T Consensus 74 ig~~g~~lna~ll~~--------~l~~~~~~~-----~~-------i~t~~~----------~~~~~~~~~~~~~~~~l~ 123 (247)
T PRK14557 74 IGTLGTIINSLMLRG--------VLTSKTNKE-----VR-------VMTSIP----------FNAVAEPYIRLRAVHHLD 123 (247)
T ss_pred HHHHHHHHHHHHHHH--------HHHhhhCCc-----ee-------EEeccc----------cccccchhhHHHHHHHHh
Confidence 322334455444432 23332 221 11 233221 111112334455777799
Q ss_pred CCceEEEcCC-ccCCCCceeecChHHHHHHHHHHcCCCEEEEe-ecccccC-------CCCccccccCHHHHHHHHHHhh
Q 010333 250 GGCLVILSNL-GYSSSGEVLNCNTYEVATACALAIEADKLICI-IDGPILD-------ESGHLIRFLTLQEADSLIRQRV 320 (513)
Q Consensus 250 ~G~IPVIspv-g~s~tGei~nld~D~vAa~lA~aL~ADkLIfL-TDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~ 320 (513)
+|.|||+.+. +. -.+++|.+|+.+|..++||.|+++ |||+|++ +++++|++++..|+. ..+.
T Consensus 124 ~g~VvV~~G~~g~------~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~ 194 (247)
T PRK14557 124 NGYIVIFGGGNGQ------PFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVV---RQNI 194 (247)
T ss_pred CCCEEEEECCcCC------CccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhc---ccCH
Confidence 9999999863 42 245799999999999999999999 5999983 358999999866541 1100
Q ss_pred hhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCc
Q 010333 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (513)
Q Consensus 321 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m 400 (513)
. - |
T Consensus 195 -------------------------------------------------------~-~---------------------~ 197 (247)
T PRK14557 195 -------------------------------------------------------Q-V---------------------M 197 (247)
T ss_pred -------------------------------------------------------H-H---------------------H
Confidence 0 0 2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCC
Q 010333 401 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (513)
Q Consensus 401 ~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ 447 (513)
. ..|+..|.+.|++ ++|+|+..++. |..++.++..||.|.+..
T Consensus 198 ~--~~A~~~a~~~gi~-v~I~ng~~~~~-l~~~l~g~~~GT~i~~~~ 240 (247)
T PRK14557 198 D--QAALLLARDYNLP-AHVFNFDEPGV-MRRICLGEHVGTLINDDA 240 (247)
T ss_pred H--HHHHHHHHHCCCc-EEEEeCCCChH-HHHHHcCCCCcEEEecCc
Confidence 1 3477888899997 89999999987 567778888999997654
No 63
>PRK06291 aspartate kinase; Provisional
Probab=99.71 E-value=5.2e-16 Score=167.67 Aligned_cols=265 Identities=17% Similarity=0.173 Sum_probs=176.2
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCcc-------c----------c----C
Q 010333 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK-------Y----------L----G 158 (513)
Q Consensus 101 t~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~-------~----------~----~ 158 (513)
++|.||||+.+.+.+ ++.+++-|......|.++|+|.++...++..|.+...... + + +
T Consensus 2 ~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (465)
T PRK06291 2 RLVMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRDIAKVKDFIADLRERHYKAIE 81 (465)
T ss_pred cEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 479999999999865 6777766655445788999999985555555433210000 0 0 0
Q ss_pred Cc-------------------------------cCCCHHHHHHHHHHHhHH-HHHHHHhhCCCCchhhHHhcCCCCccee
Q 010333 159 RY-------------------------------RITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHE 206 (513)
Q Consensus 159 G~-------------------------------RvTd~~~L~~a~~a~G~l-~~~L~a~Ls~g~~i~~L~~~Gi~~~~~a 206 (513)
.+ +-.++...+.+ .+.|+. ...|.+ ..|+++|++ +
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i-~s~GE~~Sa~l~~--------~~L~~~Gi~----a 148 (465)
T PRK06291 82 EAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYI-LSFGERLSAPILS--------GALRDLGIK----S 148 (465)
T ss_pred HhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHH-HhhhHHHHHHHHH--------HHHHhCCCC----e
Confidence 00 00011122221 345543 233333 358889987 6
Q ss_pred eEeeecCCceeeeeeccccccccCcccceE--EEec-HHHHHHHhcCCceEEEcC-CccCCCCceeec---ChHHHHHHH
Q 010333 207 VGVSVASGNFLAAKRKGVVDGVDYGATGEV--KKVD-VTRMRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATAC 279 (513)
Q Consensus 207 v~l~~~dGnfvtA~p~GvidGvD~g~tG~V--r~Vd-~~~I~~LLd~G~IPVIsp-vg~s~tGei~nl---d~D~vAa~l 279 (513)
..+++.+..+++... |+..+.. +.-. .+.++.+++.|.|||+++ +|.+.+|++.++ ++|.+|+.+
T Consensus 149 ~~l~~~~~~i~t~~~--------~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~ 220 (465)
T PRK06291 149 VALTGGEAGIITDSN--------FGNARPLPKTYERVKERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAII 220 (465)
T ss_pred EEEchHHCcEEecCC--------CCceeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHH
Confidence 778777766777542 2211110 0001 256888999999999999 588899999988 999999999
Q ss_pred HHHcCCCEEEEeecccccC---C----CCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCcccc
Q 010333 280 ALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYS 352 (513)
Q Consensus 280 A~aL~ADkLIfLTDv~gld---~----~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (513)
|.+|+||+++++|||+|++ | +++++++++.+|+.++...
T Consensus 221 A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~---------------------------------- 266 (465)
T PRK06291 221 GAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSYF---------------------------------- 266 (465)
T ss_pred HHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHhC----------------------------------
Confidence 9999999999999999973 3 6899999999998887521
Q ss_pred CCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHH
Q 010333 353 SQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLE 432 (513)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~E 432 (513)
| . +.-+..++..|.+.|++ ++|.++..+
T Consensus 267 -----------------------G-~---------------------~v~~~~a~~~~~~~~i~-i~i~~~~~~------ 294 (465)
T PRK06291 267 -----------------------G-A---------------------KVLHPRTIEPAMEKGIP-VRVKNTFNP------ 294 (465)
T ss_pred -----------------------C-C---------------------cccCHHHHHHHHHcCCc-EEEecCCCC------
Confidence 2 1 34456788889999998 899997654
Q ss_pred HHcCCCCeeEEecCCC-c----------------ccccccccChHhHH-HhhhhhHhcCccc
Q 010333 433 LFKRDGMGTMVASDLY-E----------------GTRTAKVTDLSGIK-QIIQPLVESGALV 476 (513)
Q Consensus 433 Lft~dG~GT~I~~d~y-e----------------~iR~A~~~Dv~gI~-~Li~PLe~~GiLv 476 (513)
+..||.|..+.- + .+....+.+.+|++ ++.+.|++.||-|
T Consensus 295 ----~~~gt~i~~~~~~~~~~V~~It~~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V 352 (465)
T PRK06291 295 ----EFPGTLITSDSESSKRVVKAVTLIKNVALINISGAGMVGVPGTAARIFSALAEEGVNV 352 (465)
T ss_pred ----CCCceEEEecccccCcccceEEeeCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcE
Confidence 346888875431 1 11112222456666 8999999999877
No 64
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.70 E-value=3.4e-16 Score=160.25 Aligned_cols=198 Identities=16% Similarity=0.136 Sum_probs=129.9
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCcc------cc--------------CC
Q 010333 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK------YL--------------GR 159 (513)
Q Consensus 101 t~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~------~~--------------~G 159 (513)
++|.||||+.+.+++ +..+++-|... ..+.++|+|.++-..+...|.+...... +. +.
T Consensus 1 ~~V~KFGGtSv~~~~~~~~v~~iI~~~-~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~~~~~~~~l~~i~~~h~~~~~~ 79 (298)
T cd04244 1 RLVMKFGGTSVGSAERIRHVADLVGTY-AEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIAGVKDFIEILRLRHIKAAKE 79 (298)
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 379999999999865 66666655544 4578999999986556665543321100 00 00
Q ss_pred ccC------------------------------CCHHHHHHHHHHHhHH-HHHHHHhhCCCCchhhHHhcCCCCcceeeE
Q 010333 160 YRI------------------------------TDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVG 208 (513)
Q Consensus 160 ~Rv------------------------------Td~~~L~~a~~a~G~l-~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~ 208 (513)
+-. .++...+. ..+.|+. ...|.+ ..|+++|++ +..
T Consensus 80 l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~-i~s~GE~lSa~lla--------~~L~~~Gi~----a~~ 146 (298)
T cd04244 80 AISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDY-IVSFGERLSAPIFS--------AALRSLGIK----ARA 146 (298)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhH-hccHhHHHHHHHHH--------HHHHhCCCC----eEE
Confidence 000 00001111 1234433 222333 358889988 678
Q ss_pred eeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEcC-CccCCCCceeec---ChHHHHHHHHHHcC
Q 010333 209 VSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIE 284 (513)
Q Consensus 209 l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIsp-vg~s~tGei~nl---d~D~vAa~lA~aL~ 284 (513)
+++.+..+++....+ +... ..+....++. .+..+++.|.|||+++ ++.+.+|++.++ ++|..|+.+|.+|+
T Consensus 147 l~~~~~~i~t~~~~~--~a~~--~~~~~~~i~~-~l~~ll~~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~ 221 (298)
T cd04244 147 LDGGEAGIITDDNFG--NARP--LPATYERVRK-RLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALD 221 (298)
T ss_pred EcHHHcceeecCccc--cccc--chhHHHHHHH-HHHHHhhcCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcC
Confidence 877776666654211 0000 0122222332 4567889999999999 588899999998 99999999999999
Q ss_pred CCEEEEeecccccC---C----CCccccccCHHHHHHHHH
Q 010333 285 ADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIR 317 (513)
Q Consensus 285 ADkLIfLTDv~gld---~----~g~lI~~Lt~~Ea~~ll~ 317 (513)
||+++++|||+|++ | +++++++++.+|+.++..
T Consensus 222 a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~ 261 (298)
T cd04244 222 ADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAY 261 (298)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHh
Confidence 99999999999973 3 689999999999999864
No 65
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.70 E-value=2.2e-15 Score=150.38 Aligned_cols=218 Identities=21% Similarity=0.229 Sum_probs=145.8
Q ss_pred CeEEEEeCCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHH
Q 010333 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~--------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a 171 (513)
|++|+|++|+++..++ +..++++|+.+++.|+++.||.|||.... |....+..|. +....|..
T Consensus 16 ~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~R------g~~~~~~~~~---~r~~~D~~ 86 (249)
T PRK14556 16 KRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILR------GGRANFGNKI---RRATADSM 86 (249)
T ss_pred CEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHh------CchhhccCCC---chhhhhHH
Confidence 7899999999998643 68899999999999999999999987543 2221111111 22233333
Q ss_pred HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCC
Q 010333 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (513)
Q Consensus 172 ~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G 251 (513)
-..+..+|..+.. ..|.+.|+++. ..+|-+. .+.....+.+.+.+.|+.|
T Consensus 87 GmlaT~iNal~l~--------~~l~~~~~~~~------------v~sa~~~----------~~~~e~~~~~~~~~~l~~g 136 (249)
T PRK14556 87 GMIATMINALALR--------DMLISEGVDAE------------VFSAKGV----------DGLLKVASAHEFNQELAKG 136 (249)
T ss_pred HHHHHHHHHHHHH--------HHHHHcCCCeE------------Eeecccc----------CcCCCCCCHHHHHHHHhCC
Confidence 2233445543322 35777787631 1112111 0011123678888999999
Q ss_pred ceEEEcC-CccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhhh
Q 010333 252 CLVILSN-LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQS 323 (513)
Q Consensus 252 ~IPVIsp-vg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~~ 323 (513)
.|||+.. .|. -++++|.+|+.+|..++||.|+++|||+|++ ++++++++++..|+... +.
T Consensus 137 ~vvi~~gg~G~------p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~---~l--- 204 (249)
T PRK14556 137 RVLIFAGGTGN------PFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSK---EL--- 204 (249)
T ss_pred CEEEEECCCCC------CcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhccc---ch---
Confidence 9999765 331 2457999999999999999999999999984 24678888875543210 00
Q ss_pred hHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHH
Q 010333 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (513)
Q Consensus 324 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~K 403 (513)
-..+
T Consensus 205 ----------------------------------------------------------------------------~vmd 208 (249)
T PRK14556 205 ----------------------------------------------------------------------------NVMD 208 (249)
T ss_pred ----------------------------------------------------------------------------HhHH
Confidence 0112
Q ss_pred HHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecC
Q 010333 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (513)
Q Consensus 404 L~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d 446 (513)
..|+..|.++|++ ++|.|+..++. |..++.++..||.|+-|
T Consensus 209 ~~A~~~a~~~gIp-i~I~ng~~~~~-L~~~l~Ge~~GT~i~~~ 249 (249)
T PRK14556 209 LGAFTQCRDFGIP-IYVFDLTQPNA-LVDAVLDSKYGTWVTLD 249 (249)
T ss_pred HHHHHHHHHCCCc-EEEECCCCchH-HHHHHcCCCCceEEEeC
Confidence 4577777899998 89999999998 56666778899999743
No 66
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.68 E-value=4.6e-15 Score=159.38 Aligned_cols=199 Identities=17% Similarity=0.154 Sum_probs=137.1
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH-HHcCC-Cc---------------cccCC--
Q 010333 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLL-SERGH-EA---------------KYLGR-- 159 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L-~~~Gi-~~---------------~~~~G-- 159 (513)
+++|.||||+.+.+.+ +...++-++.....|.++|+|.++..-++..| +.... .. +....
T Consensus 2 ~~iV~KFGGTSva~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~el~~~~~ 81 (447)
T COG0527 2 RLIVQKFGGTSVADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASELILDPF 81 (447)
T ss_pred ceEEEEeCCcccCCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHHHHhhcch
Confidence 3799999999999866 78888888887778999999999976333333 22210 00 00000
Q ss_pred ---------------------ccCCCHHHHHHHHHHHhHHH-HHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCcee
Q 010333 160 ---------------------YRITDSESLAAAMEAAGGIR-MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFL 217 (513)
Q Consensus 160 ---------------------~RvTd~~~L~~a~~a~G~l~-~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfv 217 (513)
....++..++.+ .+.|+.. ..|+++ .|++.|++ +..+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i-lS~GE~~Sa~lla~--------~L~~~Gv~----A~~~~~~~---- 144 (447)
T COG0527 82 IAARLAEVIAEFKKVLLGIALLGEVSPRERDEL-LSLGERLSAALLAA--------ALNALGVD----ARSLDGRQ---- 144 (447)
T ss_pred hhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHH-HhhchHHHHHHHHH--------HHHhCCCc----eEEEchHH----
Confidence 011133344433 4566543 334443 58888987 34443332
Q ss_pred eeeeccccccccCcccceEEEecHHH-HHHHhcCCceEEEcC-CccCCCCceeec---ChHHHHHHHHHHcCCCEEEEee
Q 010333 218 AAKRKGVVDGVDYGATGEVKKVDVTR-MRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICII 292 (513)
Q Consensus 218 tA~p~GvidGvD~g~tG~Vr~Vd~~~-I~~LLd~G~IPVIsp-vg~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLT 292 (513)
.|+.++-.++ ..++...+.+. +..+++.|.|||+++ .|.+++|++..+ .+|..|+.+|.+|+||++-+.|
T Consensus 145 ----~~i~t~~~~~-~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~T 219 (447)
T COG0527 145 ----AGIATDSNHG-NARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWT 219 (447)
T ss_pred ----ceeeecCccc-ccccchhhhhhhHHHHhcCCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEE
Confidence 2222222222 23344455666 999999999999999 589999998865 8999999999999999999999
Q ss_pred ccccc---C----CCCccccccCHHHHHHHHHHhh
Q 010333 293 DGPIL---D----ESGHLIRFLTLQEADSLIRQRV 320 (513)
Q Consensus 293 Dv~gl---d----~~g~lI~~Lt~~Ea~~ll~~~~ 320 (513)
||||+ | |++++|++|+.+|+.+|..-|+
T Consensus 220 DVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GA 254 (447)
T COG0527 220 DVDGVYTADPRIVPDARLLPEISYEEALELAYLGA 254 (447)
T ss_pred CCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCc
Confidence 99998 4 4799999999999999975544
No 67
>PRK08373 aspartate kinase; Validated
Probab=99.65 E-value=1.4e-14 Score=150.96 Aligned_cols=194 Identities=18% Similarity=0.135 Sum_probs=127.6
Q ss_pred cCCeEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCcc----------c---cCCc----
Q 010333 98 RGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK----------Y---LGRY---- 160 (513)
Q Consensus 98 rgkt~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~----------~---~~G~---- 160 (513)
.++++|.||||+.+.+ .++.+++-|... ..|.++|+|.++...++..|.++..... + .+.+
T Consensus 2 ~~~m~V~KFGGsSv~~-~~~~v~~ii~~~-~~~~~vvVVVSA~~gvTd~L~~l~~~~~~~~l~~i~~~h~~~~~~L~~~~ 79 (341)
T PRK08373 2 VEKMIVVKFGGSSVRY-DFEEALELVKYL-SEENEVVVVVSALKGVTDKLLKLAETFDKEALEEIEEIHEEFAKRLGIDL 79 (341)
T ss_pred CCCCEEEEECCcchHh-HHHHHHHHHHHH-hcCCCEEEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccch
Confidence 4688999999999987 466655555533 4588999999996666665543311100 0 0000
Q ss_pred ---------------cCCCHHHHHHHHHHHhHH-HHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccc
Q 010333 161 ---------------RITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGV 224 (513)
Q Consensus 161 ---------------RvTd~~~L~~a~~a~G~l-~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~Gv 224 (513)
...++..++.+ .+.|+. ...+.+ ..|+++|++ +..+++.+ ++.+..
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~D~i-ls~GE~lSa~lla--------~~L~~~Gi~----a~~l~~~~--~i~t~~--- 141 (341)
T PRK08373 80 EILSPYLKKLFNSRPDLPSEALRDYI-LSFGERLSAVLFA--------EALENEGIK----GKVVDPWE--ILEAKG--- 141 (341)
T ss_pred hhHHHHHHHHHHHhhccCChHHHHHH-HHHHHHHHHHHHH--------HHHHHCCCc----eEEEeHHH--heeecC---
Confidence 01122223333 356654 333433 358889987 44444332 222211
Q ss_pred cccccCcccceE----EEecHHHHHHHhcCCceEEEcCCccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeeccccc
Q 010333 225 VDGVDYGATGEV----KKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL 297 (513)
Q Consensus 225 idGvD~g~tG~V----r~Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gl 297 (513)
+++ ..++ ...+.+.+..+|+.|.|||+++...+.+|++.++ ++|..|+.+|.+|+||+++++|||+|+
T Consensus 142 ----~~~-~a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGV 216 (341)
T PRK08373 142 ----SFG-NAFIDIKKSKRNVKILYELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGI 216 (341)
T ss_pred ----Ccc-ceeechhhhhhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 111 1111 2356789999999999999999644778987765 899999999999999999999999997
Q ss_pred C-------CCCccccccCHHHHHHHH
Q 010333 298 D-------ESGHLIRFLTLQEADSLI 316 (513)
Q Consensus 298 d-------~~g~lI~~Lt~~Ea~~ll 316 (513)
+ ++++++++++.+|+.++.
T Consensus 217 ytaDP~~v~~A~~i~~isy~Ea~ela 242 (341)
T PRK08373 217 YTADPKLVPSARLIPYLSYDEALIAA 242 (341)
T ss_pred CCCCCCCCCCCeEcccCCHHHHHHHH
Confidence 3 357899999999998764
No 68
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.54 E-value=3.7e-13 Score=137.81 Aligned_cols=199 Identities=20% Similarity=0.181 Sum_probs=120.9
Q ss_pred EEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCc---cc---------------------
Q 010333 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA---KY--------------------- 156 (513)
Q Consensus 102 ~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~---~~--------------------- 156 (513)
.|.||||+.+.+++ ++++++-|..-...+.++|+|.++...+...|.+.-... .+
T Consensus 2 ~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~l~~i~~~~~~~~~~L~~~ 81 (295)
T cd04259 2 VVLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNLAEQLEVD 81 (295)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhh
Confidence 69999999999866 666666554333457788888887544444432211000 00
Q ss_pred ---------------cCCc---cCCCHHHHHHHHHHHhHH-HHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCcee
Q 010333 157 ---------------LGRY---RITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFL 217 (513)
Q Consensus 157 ---------------~~G~---RvTd~~~L~~a~~a~G~l-~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfv 217 (513)
..+. +-.++...+.+ .+.|+. ...|.+. .|++.|++ +..+...+ ++
T Consensus 82 ~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i-~s~GE~lSa~lla~--------~L~~~Gi~----a~~ld~~~--~i 146 (295)
T cd04259 82 ADALLANDLAQLQRWLTGISLLKQASPRTRAEV-LALGELMSTRLGAA--------YLEAQGLK----VKWLDARE--LL 146 (295)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHHHHHHHHHHHHH--------HHHhCCCC----eEEEcHHH--he
Confidence 0000 00122222222 356654 3334443 58888987 33333222 22
Q ss_pred eeeec-cccccccCcccceE-EEecHHHHHHHhcC-CceEEEcCC-ccCCCCceeec---ChHHHHHHHHHHcCCCEEEE
Q 010333 218 AAKRK-GVVDGVDYGATGEV-KKVDVTRMRERLDG-GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLIC 290 (513)
Q Consensus 218 tA~p~-GvidGvD~g~tG~V-r~Vd~~~I~~LLd~-G~IPVIspv-g~s~tGei~nl---d~D~vAa~lA~aL~ADkLIf 290 (513)
...+. |. ...+|. ..++ .....+.|++.+.. +.|||+++. |.+++|++..+ ++|.+|+.+|.+|+||++++
T Consensus 147 ~~~~~~~~-~~~~~~-~a~v~~~~~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i 224 (295)
T cd04259 147 TATPTLGG-ETMNYL-SARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEI 224 (295)
T ss_pred eecccccc-cccccc-cceehhhhhHHHHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEE
Confidence 22210 00 001111 1111 11234667777765 679999985 88899998765 99999999999999999999
Q ss_pred eecccccC---C----CCccccccCHHHHHHHHH
Q 010333 291 IIDGPILD---E----SGHLIRFLTLQEADSLIR 317 (513)
Q Consensus 291 LTDv~gld---~----~g~lI~~Lt~~Ea~~ll~ 317 (513)
+|||+|++ | ++++|++++.+|+.++..
T Consensus 225 ~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~ 258 (295)
T cd04259 225 WTDVPGLFTANPHEVPHARLLKRLDYDEAQEIAT 258 (295)
T ss_pred EECCCccccCCCCCCCCCeEeceeCHHHHHHHHH
Confidence 99999973 3 679999999999998864
No 69
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.51 E-value=7e-13 Score=137.50 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=66.9
Q ss_pred EecHHHHHHHhcCCceEEEcCCccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccc
Q 010333 238 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFL 307 (513)
Q Consensus 238 ~Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~L 307 (513)
..+.+.+..+++.|.|||+++...+.+|...++ ++|.+|+.+|.+|+||.++++|||+|++ +++++|+++
T Consensus 144 ~~~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~l 223 (327)
T TIGR02078 144 KRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYL 223 (327)
T ss_pred HhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEcccc
Confidence 456788999999999999998644778887775 8999999999999999999999999973 357799999
Q ss_pred CHHHHHHH
Q 010333 308 TLQEADSL 315 (513)
Q Consensus 308 t~~Ea~~l 315 (513)
+.+|+.++
T Consensus 224 sy~Ea~el 231 (327)
T TIGR02078 224 SYEEIKIA 231 (327)
T ss_pred CHHHHHHH
Confidence 99888755
No 70
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.50 E-value=3.3e-12 Score=125.75 Aligned_cols=217 Identities=20% Similarity=0.178 Sum_probs=148.4
Q ss_pred cCCeEEEEeCCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH-HHcCCCccccCCccCCCHHHH
Q 010333 98 RGGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLL-SERGHEAKYLGRYRITDSESL 168 (513)
Q Consensus 98 rgkt~VIKlGGs~l~~~~--------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L-~~~Gi~~~~~~G~RvTd~~~L 168 (513)
+-+++|+||||+++..++ +.+++++|+.+...|++|-||.|||.-..... .+.|+ +....
T Consensus 4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~-----------~r~~~ 72 (238)
T COG0528 4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGM-----------DRVTA 72 (238)
T ss_pred ceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCC-----------chhhh
Confidence 348999999999998732 68999999999999999999999986543222 12232 22233
Q ss_pred HHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHh
Q 010333 169 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL 248 (513)
Q Consensus 169 ~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LL 248 (513)
|..-..+-.+|..+.. .+|.++|+++++. ++-. + .......+.+...+.|
T Consensus 73 D~mGmlaTvmNal~L~--------~aL~~~~~~~~v~------------sai~--------~--~~~~e~~~~~~A~~~l 122 (238)
T COG0528 73 DYMGMLATVMNALALQ--------DALERLGVDTRVQ------------SAIA--------M--PQVAEPYSRREAIRHL 122 (238)
T ss_pred hHHHHHHHHHHHHHHH--------HHHHhcCCcceec------------cccc--------C--ccccCccCHHHHHHHH
Confidence 3322233445543332 3577888874321 1111 0 0001123556777788
Q ss_pred cCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeec-ccccC-------CCCccccccCHHHHHHHHHHhh
Q 010333 249 DGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPILD-------ESGHLIRFLTLQEADSLIRQRV 320 (513)
Q Consensus 249 d~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTD-v~gld-------~~g~lI~~Lt~~Ea~~ll~~~~ 320 (513)
+.|.|||...= +|..| -+.|.+|+..|..++||-|+..|. |||++ ||++..++||..|+.+....
T Consensus 123 ~~grVvIf~gG----tg~P~-fTTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~-- 195 (238)
T COG0528 123 EKGRVVIFGGG----TGNPG-FTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLK-- 195 (238)
T ss_pred HcCCEEEEeCC----CCCCC-CchHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcCe--
Confidence 99999998751 22333 368999999999999999999994 99983 57899999998887554200
Q ss_pred hhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCc
Q 010333 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (513)
Q Consensus 321 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m 400 (513)
= |
T Consensus 196 ---------------------------------------------------------v---------------------m 197 (238)
T COG0528 196 ---------------------------------------------------------V---------------------M 197 (238)
T ss_pred ---------------------------------------------------------e---------------------e
Confidence 0 1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 401 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 401 ~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
-..|...+-+++++ ++++|...++. |..++.++..||.|.
T Consensus 198 --D~tA~~l~~~~~i~-i~Vfn~~~~~~-l~~~~~ge~~gT~V~ 237 (238)
T COG0528 198 --DPTAFSLARDNGIP-IIVFNINKPGN-LKRALKGEEVGTIVE 237 (238)
T ss_pred --cHHHHHHHHHcCCc-EEEEeCCCCcc-HHHHHcCCCCceEec
Confidence 03466677789997 89999999998 667777889999985
No 71
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.47 E-value=2e-12 Score=132.49 Aligned_cols=192 Identities=15% Similarity=0.122 Sum_probs=120.5
Q ss_pred EEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCcccc-------------------CCc-
Q 010333 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYL-------------------GRY- 160 (513)
Q Consensus 102 ~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~-------------------~G~- 160 (513)
.|.||||+.+.+.+ +.++++-|.... .+.++|+|.++-..+...|.+........ +.+
T Consensus 2 ~V~KFGGtSv~~~~~i~~v~~iI~~~~-~~~~~vvVvSA~~gvTd~L~~~~~~~~~~~~~~~~~l~~i~~~h~~~~~~l~ 80 (294)
T cd04257 2 KVLKFGGTSLANAERIRRVADIILNAA-KQEQVAVVVSAPGKVTDLLLELAELASSGDDAYEDILQELESKHLDLITELL 80 (294)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhh
Confidence 59999999999865 666666665433 46789999998666666554332110000 000
Q ss_pred -----------------------------cCCCHHHHHHHHHHHhHH-HHHHHHhhCCCCchhhHHhcCCCCcceeeEee
Q 010333 161 -----------------------------RITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVS 210 (513)
Q Consensus 161 -----------------------------RvTd~~~L~~a~~a~G~l-~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~ 210 (513)
+-.++...+.+ .+.|+. ...|.+ ..|++.|++ +..+.
T Consensus 81 ~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i-ls~GE~lSa~lla--------~~L~~~Gi~----a~~ld 147 (294)
T cd04257 81 SGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKV-LSFGERLSARLLS--------ALLNQQGLD----AAWID 147 (294)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhHhhhh-eeHHHHHHHHHHH--------HHHHhCCCC----eEEEc
Confidence 00000111111 233432 223333 357888887 45554
Q ss_pred ecCCceeeeeeccccccccCcccceEEE-ecHHHHHHHhcC-CceEEEcCC-ccCCCCceeec---ChHHHHHHHHHHcC
Q 010333 211 VASGNFLAAKRKGVVDGVDYGATGEVKK-VDVTRMRERLDG-GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIE 284 (513)
Q Consensus 211 ~~dGnfvtA~p~GvidGvD~g~tG~Vr~-Vd~~~I~~LLd~-G~IPVIspv-g~s~tGei~nl---d~D~vAa~lA~aL~ 284 (513)
..+ ++.+.. +++ ...+.. ...+.+++++.. +.|||+.+. +.+..|++..+ .+|.+|+.+|..|+
T Consensus 148 ~~~--~i~t~~-------~~~-~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~ 217 (294)
T cd04257 148 ARE--LIVTDG-------GYL-NAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLD 217 (294)
T ss_pred hHH--eeEecC-------CCC-ceEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCEEECCCCchHHHHHHHHHHhC
Confidence 433 232210 122 122211 124677777776 899999984 77788998765 68999999999999
Q ss_pred CCEEEEeecccccC-------CCCccccccCHHHHHHHHH
Q 010333 285 ADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (513)
Q Consensus 285 ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~ 317 (513)
||.++++|||+|++ ++++++++++.+|+.++..
T Consensus 218 a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~ 257 (294)
T cd04257 218 ADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSY 257 (294)
T ss_pred CCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHh
Confidence 99999999999873 3588999999999988853
No 72
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.46 E-value=2.3e-12 Score=131.94 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=67.8
Q ss_pred HHHHHHHhcC-CceEEEcC-CccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccC
Q 010333 241 VTRMRERLDG-GCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLT 308 (513)
Q Consensus 241 ~~~I~~LLd~-G~IPVIsp-vg~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt 308 (513)
.+.++.+++. +.|||+.+ +|.+..|++.++ ++|..|+.+|.+|+||+++++|||+|++ +++++|++++
T Consensus 168 ~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls 247 (293)
T cd04243 168 KERLAQLLAEHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELS 247 (293)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeC
Confidence 3578888887 89999998 478889998876 5899999999999999999999999973 3589999999
Q ss_pred HHHHHHHHHH
Q 010333 309 LQEADSLIRQ 318 (513)
Q Consensus 309 ~~Ea~~ll~~ 318 (513)
.+|+.++...
T Consensus 248 ~~ea~~l~~~ 257 (293)
T cd04243 248 YDEAMELAYF 257 (293)
T ss_pred HHHHHHHHhC
Confidence 9999988643
No 73
>PRK09084 aspartate kinase III; Validated
Probab=99.43 E-value=5.8e-12 Score=135.82 Aligned_cols=190 Identities=15% Similarity=0.159 Sum_probs=119.9
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCc----cc-------------------
Q 010333 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA----KY------------------- 156 (513)
Q Consensus 101 t~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~----~~------------------- 156 (513)
++|.||||+.+.+.+ ++++++=|. +.+.++|+|.++-..++..|.+.--.. .+
T Consensus 1 m~V~KFGGtSv~~~e~i~~v~~ii~---~~~~~~vvVVSA~~~~Td~L~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~l~ 77 (448)
T PRK09084 1 LVVAKFGGTSVADFDAMNRSADIVL---SNPNTRLVVLSASAGVTNLLVALAEGAEPGDERLALLDEIRQIQYAILDRLG 77 (448)
T ss_pred CEEEEECccCcCCHHHHHHHHHHHh---cCCCCEEEEEcCCCCchHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999865 555555443 257889999998655665553321000 00
Q ss_pred -------------------cCCcc-CCCHHHHHHHHHHHhHH-HHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCc
Q 010333 157 -------------------LGRYR-ITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGN 215 (513)
Q Consensus 157 -------------------~~G~R-vTd~~~L~~a~~a~G~l-~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGn 215 (513)
..+.. ..++...+.+ .+.|+. ...+.+ ..|++.|++ +..+.+.+
T Consensus 78 ~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~i-~s~GE~lSa~l~~--------~~L~~~Gi~----a~~l~~~~-- 142 (448)
T PRK09084 78 DPNVVREEIERLLENITVLAEAASLATSPALTDEL-VSHGELMSTLLFV--------ELLRERGVQ----AEWFDVRK-- 142 (448)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhcCChhhhhhh-hhHHHHHHHHHHH--------HHHHhCCCC----cEEEchHH--
Confidence 00000 0111122221 355543 233333 358888987 44444332
Q ss_pred eeeeeeccccccccCcccceE-----EEecHHHHHHHhcCCceEEEcC-CccCCCCceeec---ChHHHHHHHHHHcCCC
Q 010333 216 FLAAKRKGVVDGVDYGATGEV-----KKVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEAD 286 (513)
Q Consensus 216 fvtA~p~GvidGvD~g~tG~V-----r~Vd~~~I~~LLd~G~IPVIsp-vg~s~tGei~nl---d~D~vAa~lA~aL~AD 286 (513)
++.+.. +|+. .++ .....+.+..+++.+ |||+++ +|.++.|++..+ .+|..|+.+|..|+||
T Consensus 143 ~i~t~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~ 213 (448)
T PRK09084 143 VMRTDD-------RFGR-AEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNAS 213 (448)
T ss_pred eEEecC-------CCCc-ccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCC
Confidence 222211 1221 111 111124566677888 999998 588899998877 9999999999999999
Q ss_pred EEEEeeccccc---C----CCCccccccCHHHHHHHHH
Q 010333 287 KLICIIDGPIL---D----ESGHLIRFLTLQEADSLIR 317 (513)
Q Consensus 287 kLIfLTDv~gl---d----~~g~lI~~Lt~~Ea~~ll~ 317 (513)
.++++|||+|+ | ++++++++++.+|+.++..
T Consensus 214 ~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~ 251 (448)
T PRK09084 214 RVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMAT 251 (448)
T ss_pred EEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHh
Confidence 99999999997 3 4689999999999998864
No 74
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.43 E-value=1.8e-12 Score=149.68 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=110.9
Q ss_pred cHHHHHHHhcCC-ceEEEcC-CccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccc
Q 010333 240 DVTRMRERLDGG-CLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFL 307 (513)
Q Consensus 240 d~~~I~~LLd~G-~IPVIsp-vg~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~L 307 (513)
+...++.+++.+ .|||+++ +|.+.+|++..+ ++|..|+.+|.+|+||+++++||++|++ +++++|+++
T Consensus 178 ~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~l 257 (861)
T PRK08961 178 DPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRL 257 (861)
T ss_pred HHHHHHHHhccCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEeccc
Confidence 456777777766 4999998 488899998755 9999999999999999999999999873 357899999
Q ss_pred CHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCcccccccc
Q 010333 308 TLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFA 387 (513)
Q Consensus 308 t~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~ 387 (513)
+.+|+.++... | +
T Consensus 258 s~~e~~el~~~---------------------------------------------------------g-~--------- 270 (861)
T PRK08961 258 DYDEAQEIATT---------------------------------------------------------G-A--------- 270 (861)
T ss_pred CHHHHHHHHHC---------------------------------------------------------C-C---------
Confidence 99999888632 2 2
Q ss_pred ccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCCc--cccc------------
Q 010333 388 IGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYE--GTRT------------ 453 (513)
Q Consensus 388 ~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ye--~iR~------------ 453 (513)
+.-+..|+.-|.+.|++ ++|.+...+ +..||.|..+..+ .++.
T Consensus 271 ------------~v~~~~a~~~a~~~~i~-i~v~~~~~~----------~~~gT~I~~~~~~~~~v~~It~~~~v~lItv 327 (861)
T PRK08961 271 ------------KVLHPRSIKPCRDAGIP-MAILDTERP----------DLSGTSIDGDAEPVPGVKAISRKNGIVLVSM 327 (861)
T ss_pred ------------eEECHHHHHHHHHCCCC-EEEEeCCCC----------CCCccEEeCCCCCCCcceeEEEECCEEEEEE
Confidence 33457788889999998 899987644 3468888755311 1211
Q ss_pred --ccccChHhHH-HhhhhhHhcCcccc
Q 010333 454 --AKVTDLSGIK-QIIQPLVESGALVR 477 (513)
Q Consensus 454 --A~~~Dv~gI~-~Li~PLe~~GiLv~ 477 (513)
...-+.+|++ ++.+.|++.||.|.
T Consensus 328 ~~~~~~~~~g~~a~if~~la~~~I~Vd 354 (861)
T PRK08961 328 ETIGMWQQVGFLADVFTLFKKHGLSVD 354 (861)
T ss_pred ecCCccccccHHHHHHHHHHHcCCeEE
Confidence 1222345655 89999999998775
No 75
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.40 E-value=2.1e-11 Score=124.57 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=71.6
Q ss_pred ecHHHHHHHhcCCceEEEcCC-ccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCcccccc
Q 010333 239 VDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFL 307 (513)
Q Consensus 239 Vd~~~I~~LLd~G~IPVIspv-g~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gl---d----~~g~lI~~L 307 (513)
...+.+.+.++.+.|||+++. |.+.+|++..+ .+|..|+.+|.+|+||.+.+.|||+|+ | ++++.+++|
T Consensus 162 ~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~l 241 (288)
T cd04245 162 ESYQKIKKLRDSDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEM 241 (288)
T ss_pred hhHHHHHHHHhCCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCcc
Confidence 357888899999999999984 88899999998 999999999999999999999999997 3 468999999
Q ss_pred CHHHHHHHHHH
Q 010333 308 TLQEADSLIRQ 318 (513)
Q Consensus 308 t~~Ea~~ll~~ 318 (513)
+.+|+.++...
T Consensus 242 sy~EA~ela~~ 252 (288)
T cd04245 242 TYREMRELSYA 252 (288)
T ss_pred CHHHHHHHHHC
Confidence 99999998643
No 76
>PRK09034 aspartate kinase; Reviewed
Probab=99.39 E-value=2.4e-11 Score=131.33 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=69.7
Q ss_pred ecHHHHHHHhcCCceEEEcC-CccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCcccccc
Q 010333 239 VDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFL 307 (513)
Q Consensus 239 Vd~~~I~~LLd~G~IPVIsp-vg~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gl---d----~~g~lI~~L 307 (513)
...+.+.+++..+.|||+++ +|.+.+|++..+ .+|..|+.+|.+|+||.+.+.|||+|+ | ++++.++++
T Consensus 162 ~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~l 241 (454)
T PRK09034 162 ESYDNLKKLRDRDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEI 241 (454)
T ss_pred hhHHHHHHHHhcCCEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCcc
Confidence 35677777778888999998 588899998866 899999999999999999999999997 4 468999999
Q ss_pred CHHHHHHHHHH
Q 010333 308 TLQEADSLIRQ 318 (513)
Q Consensus 308 t~~Ea~~ll~~ 318 (513)
+.+|+.++...
T Consensus 242 sy~Ea~ela~~ 252 (454)
T PRK09034 242 TYREMRELSYA 252 (454)
T ss_pred CHHHHHHHHhC
Confidence 99999998643
No 77
>PRK05925 aspartate kinase; Provisional
Probab=99.37 E-value=1.7e-11 Score=131.99 Aligned_cols=71 Identities=21% Similarity=0.198 Sum_probs=62.2
Q ss_pred HhcCCceEEEcCC-ccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHH
Q 010333 247 RLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSL 315 (513)
Q Consensus 247 LLd~G~IPVIspv-g~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~l 315 (513)
.++.+.|||+++. |.+++|++..+ ++|.+|+.+|.+|+||.++++|||+|++ +++++|++++.+|+.++
T Consensus 161 ~~~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~el 240 (440)
T PRK05925 161 ALQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNL 240 (440)
T ss_pred hccCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHH
Confidence 5677889999985 88999998754 9999999999999999999999999973 36889999999998887
Q ss_pred HH
Q 010333 316 IR 317 (513)
Q Consensus 316 l~ 317 (513)
..
T Consensus 241 a~ 242 (440)
T PRK05925 241 AS 242 (440)
T ss_pred Hh
Confidence 53
No 78
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.34 E-value=3.9e-11 Score=137.92 Aligned_cols=145 Identities=16% Similarity=0.196 Sum_probs=108.9
Q ss_pred HHHHHHh-cCCceEEEcCC-ccCCCCceeecC---hHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCH
Q 010333 242 TRMRERL-DGGCLVILSNL-GYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL 309 (513)
Q Consensus 242 ~~I~~LL-d~G~IPVIspv-g~s~tGei~nld---~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~ 309 (513)
+.|++++ +.+.|||+++. +.+.+|++..+. +|..|+.+|..|+||.++++|||+|++ +++++|++++.
T Consensus 172 ~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy 251 (819)
T PRK09436 172 RRIAASFIPADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSY 251 (819)
T ss_pred HHHHHHHhcCCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecH
Confidence 4566654 56889999984 778899988775 999999999999999999999999973 46899999999
Q ss_pred HHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCcccccccccc
Q 010333 310 QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIG 389 (513)
Q Consensus 310 ~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g 389 (513)
+|+.++... |+
T Consensus 252 ~ea~el~~~-----------------------------------------------------------G~---------- 262 (819)
T PRK09436 252 QEAMELSYF-----------------------------------------------------------GA---------- 262 (819)
T ss_pred HHHHHHHhc-----------------------------------------------------------CC----------
Confidence 999887522 10
Q ss_pred ccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCCc---ccc--------------
Q 010333 390 GQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYE---GTR-------------- 452 (513)
Q Consensus 390 ~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ye---~iR-------------- 452 (513)
+..+..|+..|.++|++ ++|.|...+ +..||+|+.+.-+ .+.
T Consensus 263 ----------kvlhp~a~~~a~~~~Ip-i~i~n~~~p----------~~~GT~I~~~~~~~~~~Vk~It~~~dvalIsV~ 321 (819)
T PRK09436 263 ----------KVLHPRTIAPIAQFQIP-CLIKNTFNP----------QAPGTLIGAESDEDSLPVKGISNLNNMAMFNVS 321 (819)
T ss_pred ----------ccchHHHHHHHHHCCce-EEEccCCCC----------CCCceEEEecCcccccccceEEEeCCEEEEEEE
Confidence 23357788899999998 899987543 3568999765211 111
Q ss_pred cccccChHhHH-HhhhhhHhcCccc
Q 010333 453 TAKVTDLSGIK-QIIQPLVESGALV 476 (513)
Q Consensus 453 ~A~~~Dv~gI~-~Li~PLe~~GiLv 476 (513)
...+.+.+|+. ++.+.|++.||-|
T Consensus 322 G~gm~~~~G~~arIf~~La~~gI~V 346 (819)
T PRK09436 322 GPGMKGMVGMASRVFAALSRAGISV 346 (819)
T ss_pred cCCCCCCcCHHHHHHHHHHHCCCcE
Confidence 11223345655 8999999999876
No 79
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.33 E-value=3.5e-11 Score=123.23 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=61.4
Q ss_pred hcCCceEEEcC-CccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCccccccCHHHHHHHH
Q 010333 248 LDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLI 316 (513)
Q Consensus 248 Ld~G~IPVIsp-vg~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gl---d----~~g~lI~~Lt~~Ea~~ll 316 (513)
+..+.|||+++ +|.+.+|++..+ ++|..|+.+|.+|+||.++++||++|+ | ++++++++++.+|+.++.
T Consensus 175 ~~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela 254 (292)
T cd04258 175 LLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMA 254 (292)
T ss_pred hhcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHH
Confidence 34668999998 488889998854 899999999999999999999999987 3 358999999999999986
Q ss_pred HH
Q 010333 317 RQ 318 (513)
Q Consensus 317 ~~ 318 (513)
..
T Consensus 255 ~~ 256 (292)
T cd04258 255 TF 256 (292)
T ss_pred HC
Confidence 43
No 80
>PLN02551 aspartokinase
Probab=99.32 E-value=8.6e-11 Score=128.88 Aligned_cols=197 Identities=17% Similarity=0.141 Sum_probs=120.0
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcC-------CCc-----------ccc---
Q 010333 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERG-------HEA-----------KYL--- 157 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~G-------i~~-----------~~~--- 157 (513)
.++|.||||+.+.+.+ +.++++-|..- ...++|+|.++..-+...|.+.. .+. +++
T Consensus 52 ~~~V~KFGGtSv~~~e~i~~v~~iI~~~--~~~~~vVVvSA~~~~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 129 (521)
T PLN02551 52 LTVVMKFGGSSVASAERMREVADLILSF--PDERPVVVLSAMGKTTNNLLLAGEKAVSCGVTNVSEIEELSAIRELHLRT 129 (521)
T ss_pred ceEEEEECCCccCCHHHHHHHHHHHHhc--CCCCEEEEEcCCCCchHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHH
Confidence 5679999999999865 66666555432 24468888887434444442221 000 000
Q ss_pred ----------------------CCcc---CCCHHHHHHHHHHHhHH-HHHHHHhhCCCCchhhHHhcCCCCcceeeEeee
Q 010333 158 ----------------------GRYR---ITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSV 211 (513)
Q Consensus 158 ----------------------~G~R---vTd~~~L~~a~~a~G~l-~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~ 211 (513)
.|.. -.++...+.+ .+.|+. ...|++. .|++.|++ +..+..
T Consensus 130 ~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~i-ls~GE~lSa~lla~--------~L~~~Gi~----a~~lda 196 (521)
T PLN02551 130 ADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYL-VSFGERMSTRIFAA--------YLNKIGVK----ARQYDA 196 (521)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHH-HhHHHHHHHHHHHH--------HHHHCCCC----cEEech
Confidence 0100 0112222222 355543 3334443 57888887 333333
Q ss_pred cCCceeeeeeccccccccCcccceEEEecHHHHHHHh-----cCCceEEEcC-CccC-CCCceeec---ChHHHHHHHHH
Q 010333 212 ASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL-----DGGCLVILSN-LGYS-SSGEVLNC---NTYEVATACAL 281 (513)
Q Consensus 212 ~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LL-----d~G~IPVIsp-vg~s-~tGei~nl---d~D~vAa~lA~ 281 (513)
.+-.++|.. +|+. .++.....+.+++.+ +.+.|||+++ +|.+ ++|++..+ .+|..|+.+|.
T Consensus 197 ~~~gi~t~~--------~~~~-a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~ 267 (521)
T PLN02551 197 FDIGFITTD--------DFTN-ADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGK 267 (521)
T ss_pred HHcceEecC--------CCCc-cchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHH
Confidence 222222211 2221 222223344554444 4568999998 4888 89999876 79999999999
Q ss_pred HcCCCEEEEeeccccc---C----CCCccccccCHHHHHHHHHHhh
Q 010333 282 AIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRV 320 (513)
Q Consensus 282 aL~ADkLIfLTDv~gl---d----~~g~lI~~Lt~~Ea~~ll~~~~ 320 (513)
+|+|+.+-+.|||+|+ | ++++++++|+.+|+.+|..-|+
T Consensus 268 ~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~Ga 313 (521)
T PLN02551 268 ALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGA 313 (521)
T ss_pred HcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCC
Confidence 9999999999999997 4 4689999999999999864433
No 81
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.29 E-value=6.7e-11 Score=121.86 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=61.1
Q ss_pred CCceEEEcCC-ccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCccccccCHHHHHHHHHH
Q 010333 250 GGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQ 318 (513)
Q Consensus 250 ~G~IPVIspv-g~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gl---d----~~g~lI~~Lt~~Ea~~ll~~ 318 (513)
.+.|||+++. |.++.|++..+ .+|..|+.+|..|+|+.++++|||+|+ | +++++|++|+.+|+.++...
T Consensus 189 ~~~v~Vv~GFig~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~ 268 (306)
T cd04247 189 ENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYY 268 (306)
T ss_pred CCceEEeeccEecCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhC
Confidence 5789999984 87888998866 899999999999999999999999997 3 35899999999999998644
Q ss_pred h
Q 010333 319 R 319 (513)
Q Consensus 319 ~ 319 (513)
|
T Consensus 269 G 269 (306)
T cd04247 269 G 269 (306)
T ss_pred c
Confidence 3
No 82
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.24 E-value=3.3e-10 Score=129.99 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=68.9
Q ss_pred HHHHHHHhcCC--ceEEEcCC-ccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCcccccc
Q 010333 241 VTRMRERLDGG--CLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFL 307 (513)
Q Consensus 241 ~~~I~~LLd~G--~IPVIspv-g~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gl---d----~~g~lI~~L 307 (513)
.+.++++++.+ .|||+++. |.+++|++..+ .+|..|+.+|.+|+||.+.+.|||+|+ | +++++|++|
T Consensus 173 ~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~i 252 (810)
T PRK09466 173 YPLLQQLLAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLL 252 (810)
T ss_pred HHHHHHHHhccCCeEEEeeCccccCCCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccC
Confidence 47788887654 89999984 88899998876 699999999999999999999999997 4 468999999
Q ss_pred CHHHHHHHHHHhh
Q 010333 308 TLQEADSLIRQRV 320 (513)
Q Consensus 308 t~~Ea~~ll~~~~ 320 (513)
+.+|+.+|..-|+
T Consensus 253 sy~Ea~ela~~Ga 265 (810)
T PRK09466 253 RLDEASELARLAA 265 (810)
T ss_pred CHHHHHHHHHcCc
Confidence 9999999975544
No 83
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=98.60 E-value=2e-08 Score=93.57 Aligned_cols=44 Identities=34% Similarity=0.641 Sum_probs=40.9
Q ss_pred cccccccccChHhHHHhhhhhHhcCccccCCHHHHHHHhhccchh
Q 010333 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEEVRALALSDFCL 493 (513)
Q Consensus 449 e~iR~A~~~Dv~gI~~Li~PLe~~GiLv~Rs~e~le~~i~~~~~~ 493 (513)
+.||.|+++|+++|++||+|++.+||||+||||+|+++| .+|.+
T Consensus 1 ~~iR~A~~~Di~~I~~Li~~~~~~gil~~rs~~~le~~i-~dF~i 44 (153)
T COG1246 1 EQIRKARISDIPAILELIRPLELQGILLRRSREQLEEEI-DDFTI 44 (153)
T ss_pred CceeeccccchHHHHHHHHHHhhccccchhhHHHHHHHH-hhhee
Confidence 479999999999999999999999999999999999999 66654
No 84
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=98.54 E-value=3.8e-06 Score=80.34 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=80.9
Q ss_pred CCceEEEcCC----ccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC---CCCccccccCHHHHHHHHHHhhhh
Q 010333 250 GGCLVILSNL----GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---ESGHLIRFLTLQEADSLIRQRVKQ 322 (513)
Q Consensus 250 ~G~IPVIspv----g~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld---~~g~lI~~Lt~~Ea~~ll~~~~~~ 322 (513)
.+.+||+=|- -+++--...-+-+|.+|..+|..++|.++|+.|||+|++ +++++++++..+|++... .
T Consensus 92 ~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~~kLv~eI~A~dl~~~~---t-- 166 (212)
T COG2054 92 PDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPKGKLVREIRASDLKTGE---T-- 166 (212)
T ss_pred cccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCcchhhhhhhHhhcccCc---c--
Confidence 4556676652 234444567788999999999999999999999999974 567799888766653310 0
Q ss_pred hhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHH
Q 010333 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 402 (513)
Q Consensus 323 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~ 402 (513)
.+| + +.+
T Consensus 167 -----------------~vD-----------------------------------~---------------------~~P 173 (212)
T COG2054 167 -----------------SVD-----------------------------------P---------------------YLP 173 (212)
T ss_pred -----------------ccc-----------------------------------c---------------------hhh
Confidence 000 1 444
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEec
Q 010333 403 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (513)
Q Consensus 403 KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~ 445 (513)
+| +.+.+.+ +.++||..+..+++.+...+-+||.|..
T Consensus 174 ~L-----l~k~~m~-~~Vvng~~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 174 KL-----LVKYKMN-CRVVNGKEPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred HH-----HHHcCCc-eEEECCCCHHHHHHHHhccccceEEEeC
Confidence 43 3467777 8999999999999888766779999975
No 85
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=98.50 E-value=5.3e-06 Score=85.55 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=63.9
Q ss_pred HHHHHHhc----CCceEEEcCCccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeeccccc--C------CCCccccc
Q 010333 242 TRMRERLD----GGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL--D------ESGHLIRF 306 (513)
Q Consensus 242 ~~I~~LLd----~G~IPVIspvg~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gl--d------~~g~lI~~ 306 (513)
+.|.+.++ .+.|||+++.+.+.+|++..+ -+|..|+.+|.+|+||.+.+.|||+.. | ++.+.|++
T Consensus 177 ~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itTLGRGGSDyTAs~iAa~l~A~ev~I~TDV~i~taDPriV~~~~A~~i~~ 256 (304)
T cd04248 177 ERISEAFRDIDPRDELPIVTGYAKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFHLSSADPKLVGEDKARPIGR 256 (304)
T ss_pred HHHHHHHHhhccCCcEEEeCCccCCCCCCEEEcCCCcHHHHHHHHHHHcCCCEEEEECCCceecCCCCccCCCCceEeCc
Confidence 45555444 578999999876778998866 799999999999999999999999732 3 35688999
Q ss_pred cCHHHHHHHHHHhh
Q 010333 307 LTLQEADSLIRQRV 320 (513)
Q Consensus 307 Lt~~Ea~~ll~~~~ 320 (513)
++.+|+.+|..-|+
T Consensus 257 lsY~EA~ELA~~Ga 270 (304)
T cd04248 257 TNYDVADQLANLGM 270 (304)
T ss_pred cCHHHHHHHHHcCh
Confidence 99999999975443
No 86
>PRK09181 aspartate kinase; Validated
Probab=98.38 E-value=2.2e-05 Score=85.77 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=65.9
Q ss_pred HHHHHHHhc----CCceEEEcCCccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeeccccc--C------CCCcccc
Q 010333 241 VTRMRERLD----GGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL--D------ESGHLIR 305 (513)
Q Consensus 241 ~~~I~~LLd----~G~IPVIspvg~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gl--d------~~g~lI~ 305 (513)
.+.+++.+. .+.|||+++.+.++.|++..+ .+|..|+.+|.+|+||.+.+.|||+.. | ++++.|+
T Consensus 182 ~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTLGRGGSDyTAailAa~L~A~~~~IwTDV~I~taDPriV~~~~A~~i~ 261 (475)
T PRK09181 182 DERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKEYHLSSADPKLVGEDKVVPIG 261 (475)
T ss_pred HHHHHHHHhhhccCCcEEEecCCcCCCCCCEEecCCChHHHHHHHHHHHcCCCEEEEeCCCccccCCCCcCCCCCCeEcC
Confidence 456666666 588999999866677998876 899999999999999999999999732 3 3678999
Q ss_pred ccCHHHHHHHHHHhh
Q 010333 306 FLTLQEADSLIRQRV 320 (513)
Q Consensus 306 ~Lt~~Ea~~ll~~~~ 320 (513)
+|+.+|+.+|..-|+
T Consensus 262 ~lsy~Ea~ELA~~GA 276 (475)
T PRK09181 262 RTNYDVADQLANLGM 276 (475)
T ss_pred ccCHHHHHHHHHcCc
Confidence 999999999975544
No 87
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00061 Score=71.95 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=58.1
Q ss_pred cCCceEEEcC-Cc-cCCCCceee---cChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCccccccCHHHHHHHH
Q 010333 249 DGGCLVILSN-LG-YSSSGEVLN---CNTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLI 316 (513)
Q Consensus 249 d~G~IPVIsp-vg-~s~tGei~n---ld~D~vAa~lA~aL~ADkLIfLTDv~gl---d----~~g~lI~~Lt~~Ea~~ll 316 (513)
..+.|||+.+ +| .-++|-+.. .-+|..|+.+|.+|++|.+=.--||||+ | |.+++++.+|.+|+.+|.
T Consensus 257 ken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELa 336 (559)
T KOG0456|consen 257 KENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELA 336 (559)
T ss_pred cCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHH
Confidence 3578999997 45 335665443 4789999999999999999999999986 4 468999999999999986
Q ss_pred HHhh
Q 010333 317 RQRV 320 (513)
Q Consensus 317 ~~~~ 320 (513)
.-|+
T Consensus 337 YfGa 340 (559)
T KOG0456|consen 337 YFGA 340 (559)
T ss_pred hhhh
Confidence 5554
No 88
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=61.22 E-value=28 Score=36.46 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=47.6
Q ss_pred CeEEEEeCCccCCCCC-h----HHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHcCCCccc
Q 010333 100 GTFVVIISGEIVSSPY-L----DPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKY 156 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l----~~l~~dIA~L~~lGirvVLVHGg-gpqI~~~L~~~Gi~~~~ 156 (513)
+.+|.-+.|.+++++. . +.+.+-|..|++.|+++.|+.++ +..+...++..|+..-|
T Consensus 129 ~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 129 HVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred cEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 6789999999999865 2 56778888899999999999866 77888899999997544
No 89
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=57.94 E-value=37 Score=35.58 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=48.3
Q ss_pred CCeEEEEeCCccCCCCC-h----HHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHcCCCccc
Q 010333 99 GGTFVVIISGEIVSSPY-L----DPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKY 156 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-l----~~l~~dIA~L~~lGirvVLVHGg-gpqI~~~L~~~Gi~~~~ 156 (513)
.+.+|.-+.|.+++++. . +.+.+-+..|++.|++++|+.++ +..+...|++.|+...|
T Consensus 126 ~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 126 PHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred ceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 47899999999999865 2 67888888999999999999865 56688889999998644
No 90
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=57.63 E-value=65 Score=27.42 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=48.7
Q ss_pred HHHHHHh-hhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCc
Q 010333 84 VKWFREA-WPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA 154 (513)
Q Consensus 84 v~~fR~a-~pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~ 154 (513)
++.|++. ...+.....+.+|+-+.+-..-|.. +..+.+-+..++..|.+++++ |-.|++.+.++..|+..
T Consensus 25 a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~-g~~~~v~~~l~~~gl~~ 96 (109)
T cd07041 25 AEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILT-GIRPEVAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEE-eCCHHHHHHHHHhCCCh
Confidence 4445553 3555544567899999877665544 566666566678889886665 66789999999988764
No 91
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=52.53 E-value=14 Score=35.44 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=15.0
Q ss_pred hHHHHHcCCCCeeEEecCC
Q 010333 429 LLLELFKRDGMGTMVASDL 447 (513)
Q Consensus 429 LL~ELft~dG~GT~I~~d~ 447 (513)
|..||||+.|.||+|.+..
T Consensus 2 L~kELFt~sgagTlirrG~ 20 (170)
T PF04768_consen 2 LQKELFTDSGAGTLIRRGY 20 (170)
T ss_dssp HHHHHHSSSTSSEEEE---
T ss_pred ccchhcCCCCCceEEecCe
Confidence 6789999999999997665
No 92
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=51.66 E-value=1.3e+02 Score=28.07 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=43.2
Q ss_pred HhhcCCeEEEEeCCccCCCCC---hHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHHHHHcCCC
Q 010333 95 WAHRGGTFVVIISGEIVSSPY---LDPILKDIAFLHHLGIRFVLVPGTH--VQIDKLLSERGHE 153 (513)
Q Consensus 95 ~~~rgkt~VIKlGGs~l~~~~---l~~l~~dIA~L~~lGirvVLVHGgg--pqI~~~L~~~Gi~ 153 (513)
..+.-+.+|+-+.|.....+. ++.+.+-|..|+..|++++++.++. ..+...++..++.
T Consensus 21 ~~~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~ 84 (170)
T TIGR01668 21 KKVGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP 84 (170)
T ss_pred HHCCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE
Confidence 345558899999888876543 5677777888999999999999875 3344555667765
No 93
>PLN02645 phosphoglycolate phosphatase
Probab=51.42 E-value=67 Score=33.19 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=51.0
Q ss_pred CChhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCCh----HHHHHHHHHcCC
Q 010333 78 VEDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTH----VQIDKLLSERGH 152 (513)
Q Consensus 78 ~~~~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGgg----pqI~~~L~~~Gi 152 (513)
+...++.+|+.. -+.|++=+.|-++.+.. ++...+-|..|++.|++++++.+.. .++-+.|+++|+
T Consensus 16 ~~~~~~~~~~~~---------~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi 86 (311)
T PLN02645 16 LTLENADELIDS---------VETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGL 86 (311)
T ss_pred CCHHHHHHHHHh---------CCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCC
Confidence 344555555442 28999999999998755 7888899999999999999999975 445556677887
Q ss_pred C
Q 010333 153 E 153 (513)
Q Consensus 153 ~ 153 (513)
+
T Consensus 87 ~ 87 (311)
T PLN02645 87 N 87 (311)
T ss_pred C
Confidence 5
No 94
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=40.80 E-value=1e+02 Score=32.50 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=41.7
Q ss_pred CeEEEEeCCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHcCCCc
Q 010333 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHEA 154 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~--l~~l~~dIA~L~~lGirvVLVHGgg-pqI~~~L~~~Gi~~ 154 (513)
|.|+.-+.|..+.+.. .+...+-|..|++.|+.||+..|-. ..+....+++++..
T Consensus 2 KLIftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~ 59 (302)
T PRK12702 2 RLVLSSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEH 59 (302)
T ss_pred cEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCC
Confidence 6788899999998644 5667777899999999999998863 33555566666553
No 95
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=40.65 E-value=1.7e+02 Score=26.37 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCh----------------HHHHHHHHHcCCC
Q 010333 116 LDPILKDIAFLHHLGIRFVLVPGTH----------------VQIDKLLSERGHE 153 (513)
Q Consensus 116 l~~l~~dIA~L~~lGirvVLVHGgg----------------pqI~~~L~~~Gi~ 153 (513)
++.+.+-+..|++.|++++|+..+. ..+...++..|+.
T Consensus 29 ~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 82 (147)
T TIGR01656 29 RPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVA 82 (147)
T ss_pred cCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCc
Confidence 4566777788999999999999864 3455667778875
No 96
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=40.37 E-value=90 Score=31.28 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=42.9
Q ss_pred CCeEEEEeCCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHcCCCc
Q 010333 99 GGTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHEA 154 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~--l~~l~~dIA~L~~lGirvVLVHGgg-pqI~~~L~~~Gi~~ 154 (513)
-|.++.=+.|.++.+.. .+...+-|..|++.|++++++.|-. ..+...++++++..
T Consensus 4 ~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~ 62 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLED 62 (273)
T ss_pred ceEEEEcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC
Confidence 36788999999998543 5666777888999999999998864 35666777777653
No 97
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=39.28 E-value=1e+02 Score=30.59 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=45.9
Q ss_pred CeEEEEeCCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHcCCCccc--cCCccCC
Q 010333 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHEAKY--LGRYRIT 163 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~--l~~l~~dIA~L~~lGirvVLVHGggp-qI~~~L~~~Gi~~~~--~~G~RvT 163 (513)
|.++.=+.|.++.++. -+...+.|..|++.|++++++.|=.. .+...++++++...+ .+|-.+.
T Consensus 3 kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~I~ 71 (272)
T PRK15126 3 RLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDAYLITGNGTRVH 71 (272)
T ss_pred cEEEEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcEEecCCcEEE
Confidence 6788999999998654 36677888899999999999987643 345566777765322 2454443
No 98
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=39.19 E-value=2.2e+02 Score=24.79 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=53.9
Q ss_pred HHHHHHHhhh-HHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccc
Q 010333 83 FVKWFREAWP-YLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKY 156 (513)
Q Consensus 83 fv~~fR~a~p-Yi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~ 156 (513)
-...|++..- ++..-..+.+||-+.+-..-|.. +..++.-...++..|.+++|+ |-.|++.+.+...|+...|
T Consensus 27 ~a~~~~e~~~~~~~~~~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~-~i~p~v~~~~~~~gl~~~~ 101 (117)
T COG1366 27 RAPALKETLLEVIAASGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLV-GIQPEVARTLELTGLDKSF 101 (117)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEE-eCCHHHHHHHHHhCchhhc
Confidence 3445666544 66666666688888876665543 677888888888899887776 7789999999999988544
No 99
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=38.63 E-value=18 Score=34.42 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=29.8
Q ss_pred cccccccccChHhHHHhhhhhHh---cCccccCCHHHHHHH
Q 010333 449 EGTRTAKVTDLSGIKQIIQPLVE---SGALVRRTDEEVRAL 486 (513)
Q Consensus 449 e~iR~A~~~Dv~gI~~Li~PLe~---~GiLv~Rs~e~le~~ 486 (513)
-.||.|+++|.+.|++||+-|.+ ---.|.=+.+.|+.+
T Consensus 4 ~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~ 44 (163)
T KOG3216|consen 4 IRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARD 44 (163)
T ss_pred eEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhh
Confidence 36999999999999999998754 444566677777775
No 100
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=38.41 E-value=1.1e+02 Score=29.37 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=41.7
Q ss_pred CeEEEEeCCccCCCCC-h-HHHHHHHHHHHhCCCeEEEEeCChHH-HHHHHHHcCCCc
Q 010333 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHEA 154 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l-~~l~~dIA~L~~lGirvVLVHGggpq-I~~~L~~~Gi~~ 154 (513)
|.++.=+.|.++.+.. + +...+.|..|++.|++++++.|=... +.+.++.+++..
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 4 KAIAIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSG 61 (230)
T ss_pred eEEEEecCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence 6788889999997654 3 67778888899999999999886433 445566777653
No 101
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=38.03 E-value=1.1e+02 Score=29.21 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=39.0
Q ss_pred EEEEeCCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHcCCC
Q 010333 102 FVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHE 153 (513)
Q Consensus 102 ~VIKlGGs~l~~~~--l~~l~~dIA~L~~lGirvVLVHGggp-qI~~~L~~~Gi~ 153 (513)
++.=+.|..+.++. .....+-|..|++.|++++++.|-.+ .+...++.+++.
T Consensus 2 i~~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 56678899997654 45567788889999999999999754 355566667664
No 102
>PRK10976 putative hydrolase; Provisional
Probab=37.92 E-value=1.1e+02 Score=30.23 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=45.2
Q ss_pred CeEEEEeCCccCCCCC-h-HHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHcCCCccc--cCCccCC
Q 010333 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHEAKY--LGRYRIT 163 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l-~~l~~dIA~L~~lGirvVLVHGggp-qI~~~L~~~Gi~~~~--~~G~RvT 163 (513)
|.++.=+.|.++.+.. + +...+.|..|++.|+++++..|=.. .+...++.+++...+ .+|-.+.
T Consensus 3 kli~~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~ 71 (266)
T PRK10976 3 QVVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKSYMITSNGARVH 71 (266)
T ss_pred eEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCeEEEcCCcEEE
Confidence 6788899999997654 3 5677888889999999999988643 344556677765322 2554443
No 103
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=36.31 E-value=1e+02 Score=25.34 Aligned_cols=39 Identities=23% Similarity=0.197 Sum_probs=24.9
Q ss_pred eEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChH
Q 010333 101 TFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHV 141 (513)
Q Consensus 101 t~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggp 141 (513)
+-|+--||.-.+| ...+...|..++..--.++|||||.|
T Consensus 4 ~rVli~GgR~~~D--~~~i~~~Ld~~~~~~~~~~lvhGga~ 42 (71)
T PF10686_consen 4 MRVLITGGRDWTD--HELIWAALDKVHARHPDMVLVHGGAP 42 (71)
T ss_pred CEEEEEECCcccc--HHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 4456667777775 34455555555544456889999973
No 104
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=36.19 E-value=1.6e+02 Score=26.78 Aligned_cols=40 Identities=13% Similarity=0.288 Sum_probs=30.5
Q ss_pred CeEEEEeCCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCC
Q 010333 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGT 139 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~--------l~~l~~dIA~L~~lGirvVLVHGg 139 (513)
|.+++=+.|.++.+.. .....+.+..|++.|++++++.|=
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR 49 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSR 49 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 7889999999986421 246677777788899998888764
No 105
>PTZ00063 histone deacetylase; Provisional
Probab=36.12 E-value=1.4e+02 Score=33.11 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=49.5
Q ss_pred hhHHHHHHHHhh-hHHHhhcCCeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCChHH
Q 010333 80 DEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQ 142 (513)
Q Consensus 80 ~~~fv~~fR~a~-pYi~~~rgkt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGggpq 142 (513)
+..|...|++.. |-+..|+=..+|+-.|..++..+. .+...+-+..+++.+.++++|-|||-.
T Consensus 231 D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~ 301 (436)
T PTZ00063 231 DDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYT 301 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCC
Confidence 677999999865 789999999999999999998753 244444445567789999999988743
No 106
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=34.65 E-value=1.1e+02 Score=30.97 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=43.1
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCCh----HHHHHHHHHcCCCc
Q 010333 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTH----VQIDKLLSERGHEA 154 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGgg----pqI~~~L~~~Gi~~ 154 (513)
-+.|++=+.|-++.++. ++...+-|..|++.|+++++|.++. .+....++++|+..
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~ 62 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNG 62 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 46788888888887655 6777888888999999999999853 34445677788753
No 107
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=33.59 E-value=2.6e+02 Score=23.47 Aligned_cols=69 Identities=25% Similarity=0.296 Sum_probs=44.0
Q ss_pred HHHHHHhh-hHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCC
Q 010333 84 VKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHE 153 (513)
Q Consensus 84 v~~fR~a~-pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~ 153 (513)
++.|++.. ..+.....+.+|+-+.+-..-|-. +..+.+=...+++.|.+++++ +-.+++.+.++..|+.
T Consensus 23 ~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~-~~~~~v~~~l~~~gl~ 93 (100)
T cd06844 23 VEQFKEELLHNITNVAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLT-GISPAVRITLTESGLD 93 (100)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEE-CCCHHHHHHHHHhCch
Confidence 33444443 334333357888888765544433 555555555678889887776 5667888888887765
No 108
>PRK07922 N-acetylglutamate synthase; Validated
Probab=33.02 E-value=27 Score=32.66 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=31.2
Q ss_pred ccccccccChHhHHHhhhhhHhcCccccCCHHHHHHHhhc
Q 010333 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEEVRALALS 489 (513)
Q Consensus 450 ~iR~A~~~Dv~gI~~Li~PLe~~GiLv~Rs~e~le~~i~~ 489 (513)
.+|+|+++|.+.|.+|++++.++.....+..+....++..
T Consensus 7 ~iR~a~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~ 46 (169)
T PRK07922 7 TVRRARTSDVPAIKRLVDPYAQGRILLEKNLVTLYEAVQE 46 (169)
T ss_pred eeecCCHhhHHHHHHHHHHHhhcCccccchHHHHHhhcCc
Confidence 7999999999999999999988766666655555455533
No 109
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=32.78 E-value=1.3e+02 Score=29.71 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=43.6
Q ss_pred CeEEEEeCCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHcCCCc
Q 010333 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHEA 154 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~--l~~l~~dIA~L~~lGirvVLVHGggp-qI~~~L~~~Gi~~ 154 (513)
|.+++=+.|..+.+.. -+...+-|..+++.|++++|+.|-.. .+...++.+++..
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 4 KLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred eEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 6788889999998765 46667777789999999999998754 4666777888775
No 110
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=32.77 E-value=1.4e+02 Score=29.40 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=45.8
Q ss_pred CeEEEEeCCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCChHH-HHHHHHHcCCCccc--cCCccCC
Q 010333 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHEAKY--LGRYRIT 163 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~--l~~l~~dIA~L~~lGirvVLVHGggpq-I~~~L~~~Gi~~~~--~~G~RvT 163 (513)
|.++.=+.|.++.++. -+...+-|..|++.|+++++..|=.+. +...++++++...+ .+|-.+.
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~ 72 (272)
T PRK10530 4 RVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALDTPAICCNGTYLY 72 (272)
T ss_pred cEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCCEEEcCCcEEE
Confidence 6888999999998754 456678888999999999999875433 45566777765322 3555443
No 111
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=32.28 E-value=1.2e+02 Score=30.23 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=41.5
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCC----hHHHHHHHHHcCCC
Q 010333 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT----HVQIDKLLSERGHE 153 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGg----gpqI~~~L~~~Gi~ 153 (513)
+.|++=+.|.++.... +....+-|..|++.|++++++.++ ..++.+.++.+|++
T Consensus 2 ~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred CEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 4677888888887655 667788888899999999999973 23456667777765
No 112
>PRK10444 UMP phosphatase; Provisional
Probab=32.02 E-value=1.2e+02 Score=30.38 Aligned_cols=54 Identities=11% Similarity=0.192 Sum_probs=41.7
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChH----HHHHHHHHcCCC
Q 010333 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHV----QIDKLLSERGHE 153 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggp----qI~~~L~~~Gi~ 153 (513)
+.|+.=+.|-++.+.. ++...+-|..|++.|.+++++.+..+ +..+.|+.+|++
T Consensus 2 ~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~ 60 (248)
T PRK10444 2 KNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD 60 (248)
T ss_pred cEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 4677888888887655 67788888899999999999999754 345556667764
No 113
>PTZ00174 phosphomannomutase; Provisional
Probab=31.77 E-value=84 Score=31.16 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=34.0
Q ss_pred CeEEEEeCCccCCCCC-h-HHHHHHHHHHHhCCCeEEEEeCCh
Q 010333 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTH 140 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l-~~l~~dIA~L~~lGirvVLVHGgg 140 (513)
|.++.=+.|.++.++. + +...+.|..+++.|+++|+..|-.
T Consensus 6 klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTGR~ 48 (247)
T PTZ00174 6 TILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGSD 48 (247)
T ss_pred eEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 6788899999998765 3 566788888999999999998853
No 114
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=31.45 E-value=1.7e+02 Score=27.93 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=39.1
Q ss_pred CeEEEEeCCccCCCCC-h-HHHHHHHHHHHhCCCeEEEEeCChHH-HHHHHHHcCCC
Q 010333 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l-~~l~~dIA~L~~lGirvVLVHGggpq-I~~~L~~~Gi~ 153 (513)
|.++.=+.|.++.+.. + +...+-|..|++.|++++++.|-.+. +...++.+++.
T Consensus 2 k~v~~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred cEEEEecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 5678889999997644 4 66778888899999999999886432 44444445543
No 115
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=30.72 E-value=1.6e+02 Score=29.06 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=41.3
Q ss_pred CeEEEEeCCccCCCCC-h-HHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHcCCC
Q 010333 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHE 153 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l-~~l~~dIA~L~~lGirvVLVHGggp-qI~~~L~~~Gi~ 153 (513)
|.++.-+.|..+.+.. + +...+-|..|++.|+++|++.|-.. .+...++++++.
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 4 KLIAIDMDGTLLLPDHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred EEEEEecCCcCcCCCCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 6788899999998654 3 5677888889999999999987643 345566777764
No 116
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=30.15 E-value=1.7e+02 Score=29.28 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=40.7
Q ss_pred CeEEEEeCCccCCCCC-h-HHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHcCCC
Q 010333 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHE 153 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l-~~l~~dIA~L~~lGirvVLVHGggp-qI~~~L~~~Gi~ 153 (513)
+.++.=+.|.++.++. + +...+.|..|++.|+++|+..|-.. .+...++++++.
T Consensus 8 ~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 8 LLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred eEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 5678889999998654 3 5677889999999999999988643 344556666653
No 117
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=29.30 E-value=1.3e+02 Score=30.10 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=40.6
Q ss_pred CeEEEEeCCccCCCCC-----hHHHHHHHHHHHhCCCeEEEEeCCh----HHHHHHHHHcCCC
Q 010333 100 GTFVVIISGEIVSSPY-----LDPILKDIAFLHHLGIRFVLVPGTH----VQIDKLLSERGHE 153 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-----l~~l~~dIA~L~~lGirvVLVHGgg----pqI~~~L~~~Gi~ 153 (513)
|.|+.=+.|-++.... ++...+-|..|++.|++++++.+.. .++.+.|+.+|++
T Consensus 2 k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred CEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 4567777777776433 6778888889999999999999853 3466677777765
No 118
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=29.29 E-value=33 Score=37.11 Aligned_cols=137 Identities=5% Similarity=-0.187 Sum_probs=76.1
Q ss_pred eEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHhHHHH
Q 010333 101 TFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRM 180 (513)
Q Consensus 101 t~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G~l~~ 180 (513)
.-+.++++-+..++ ..+....+-.+.+.++-+++.||++++-..-+-..|.+ ...| |.+.+..+. .++.=.
T Consensus 142 ~~~s~v~~~v~~~~-~~e~t~s~f~~~~v~~t~ivl~~~~~p~i~e~~i~gn~--i~~G-r~~~~h~~~-----~~~~~~ 212 (495)
T COG5630 142 IGNSNFIPIVKPYV-YNEETASEFMTKDVVKFMDCLCQGNIPHIDKFFILNNA--IPSG-RNDNAHVFI-----LSQELE 212 (495)
T ss_pred ccccceecccCCCc-chhhhHHHHHHHhhhheeeeecCCCCccceeeeecccc--cccc-cccccchhh-----HHHHHH
Confidence 34788888877664 34455556667788888999999987755444445554 4567 888777664 222222
Q ss_pred HHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEcCCc
Q 010333 181 MIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLG 260 (513)
Q Consensus 181 ~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIspvg 260 (513)
.+...++.++. ..+ .+-+...+.+..+.. ..|++..+++..+| .+..+++.-.+|+....+
T Consensus 213 ~~~~~l~~~~~-----~~~-------kR~t~s~~~l~~~~~-----~~de~~~~e~~yh~--~nl~l~r~~l~~l~a~a~ 273 (495)
T COG5630 213 HLSSSLSHNIS-----TLT-------KREPRSQNLLHRMEV-----KKDEISSLECEYHD--ENLLLMDKVLSNLAATAT 273 (495)
T ss_pred HHHHHHhhccc-----ccc-------ccCccccchhhhhhh-----hhcccccccccccC--hHHHHHHHHhhhcchhhc
Confidence 22222322111 111 111112222222221 24777788887777 556677777777766554
Q ss_pred cCCCC
Q 010333 261 YSSSG 265 (513)
Q Consensus 261 ~s~tG 265 (513)
--.++
T Consensus 274 ~litt 278 (495)
T COG5630 274 GLITT 278 (495)
T ss_pred cCcch
Confidence 33333
No 119
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=28.70 E-value=1.8e+02 Score=25.45 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=37.1
Q ss_pred CeEEEEeCCccCCCC---------C-hHHHHHHHHHHHhCCCeEEEEeCCh---------HHHHHHHHHcCCC
Q 010333 100 GTFVVIISGEIVSSP---------Y-LDPILKDIAFLHHLGIRFVLVPGTH---------VQIDKLLSERGHE 153 (513)
Q Consensus 100 kt~VIKlGGs~l~~~---------~-l~~l~~dIA~L~~lGirvVLVHGgg---------pqI~~~L~~~Gi~ 153 (513)
|.+++-++|.++... . ++.+.+-+..|++.|++++|+.++. ..+...++.+++.
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 345666666666310 1 4566777778899999999998875 3466677777775
No 120
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=28.68 E-value=1.9e+02 Score=29.99 Aligned_cols=63 Identities=19% Similarity=0.174 Sum_probs=43.2
Q ss_pred hhHHHHHHHHhh-hHHHhhcCCeEEEEeCCccCCCCC----------hHHHHHHHHHHHh-CCCeEEEEeCChHH
Q 010333 80 DEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY----------LDPILKDIAFLHH-LGIRFVLVPGTHVQ 142 (513)
Q Consensus 80 ~~~fv~~fR~a~-pYi~~~rgkt~VIKlGGs~l~~~~----------l~~l~~dIA~L~~-lGirvVLVHGggpq 142 (513)
+..|...|++.. |-+.+|+=..+||-.|-.+...+. +..+.+.|..+.. .+.++|+|.+||-.
T Consensus 221 d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~ 295 (311)
T PF00850_consen 221 DDEYLEAFEEILLPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYN 295 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SS
T ss_pred hHHHHHHHhhccccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCC
Confidence 577999999987 899999999999999999887643 3444444444321 22399999999743
No 121
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=27.70 E-value=4.3e+02 Score=23.41 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=34.0
Q ss_pred eEEEEeCCccCCCC--------------ChHHHHHHHHHHHhCCCeEEEEeCC-hHH-HHHHHHHcC
Q 010333 101 TFVVIISGEIVSSP--------------YLDPILKDIAFLHHLGIRFVLVPGT-HVQ-IDKLLSERG 151 (513)
Q Consensus 101 t~VIKlGGs~l~~~--------------~l~~l~~dIA~L~~lGirvVLVHGg-gpq-I~~~L~~~G 151 (513)
.+|+=+.|.+..++ -++.+.+-|..|++.|+++.++.++ .+. +...++..+
T Consensus 2 li~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 2 VIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred EEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 45555666666552 1456777777788999999999998 444 344556555
No 122
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=27.26 E-value=2.1e+02 Score=28.04 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=37.6
Q ss_pred EEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHcCCC
Q 010333 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHE 153 (513)
Q Consensus 102 ~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGgg-pqI~~~L~~~Gi~ 153 (513)
++.=+.|.++.+.. .+...+-|..|++.|+++|++.|-. ..+...++++|+.
T Consensus 2 i~~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 2 IFTDLDGTLLPPGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred EEEeCCCCCcCCCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 56667888887433 5667888888999999999997653 3455566677754
No 123
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=26.18 E-value=1.8e+02 Score=28.54 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=42.9
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHH-H--HHHHHHcCCCc
Q 010333 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQ-I--DKLLSERGHEA 154 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpq-I--~~~L~~~Gi~~ 154 (513)
+.|++-+.|....... ++...+-|..|++.|+++++|...... . .+.|+++|++.
T Consensus 9 ~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 9 DVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINA 67 (242)
T ss_pred CEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCc
Confidence 5789999998887654 778888888899999999999876332 2 26778888875
No 124
>PTZ00346 histone deacetylase; Provisional
Probab=25.49 E-value=2.5e+02 Score=31.03 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=47.4
Q ss_pred hhHHHHHHHHhh-hHHHhhcCCeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCCh
Q 010333 80 DEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTH 140 (513)
Q Consensus 80 ~~~fv~~fR~a~-pYi~~~rgkt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGgg 140 (513)
+..|...|++.+ |-+..|+=..+|+-.|-.+...+- .+.+.+-+..+++.+.++++|-|||
T Consensus 249 D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGG 317 (429)
T PTZ00346 249 DFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGG 317 (429)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 577999999865 779999999999999999887643 2334443445667788999999886
No 125
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=25.09 E-value=1.9e+02 Score=24.86 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=33.6
Q ss_pred EeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCCh----HHHHHHHHHcCCCc
Q 010333 105 IISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTH----VQIDKLLSERGHEA 154 (513)
Q Consensus 105 KlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGgg----pqI~~~L~~~Gi~~ 154 (513)
=+.|-+..... ++...+-|..|++.|.++++|.-+. .+..+.|+.+|++.
T Consensus 4 D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 4 DLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp ESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred eCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 34444444333 5667888888999999999998764 45667778888774
No 126
>PRK07757 acetyltransferase; Provisional
Probab=24.73 E-value=59 Score=28.96 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=33.8
Q ss_pred ccccccccChHhHHHhhhhhHhcCccccCCHHHHHHHhhccc
Q 010333 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEEVRALALSDF 491 (513)
Q Consensus 450 ~iR~A~~~Dv~gI~~Li~PLe~~GiLv~Rs~e~le~~i~~~~ 491 (513)
.+|+++.+|++.+.+|..-....+....++.+.+...+..+|
T Consensus 3 ~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (152)
T PRK07757 3 EIRKARLSDVKAIHALINVYAKKGLMLPRSLDELYENIRDFY 44 (152)
T ss_pred eEeeCCcccHHHHHHHHHHHHhcCCccCCCHHHHHhccCcEE
Confidence 489999999999999988777777777788888877774433
No 127
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=23.91 E-value=1.4e+02 Score=27.58 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHcCCCc
Q 010333 117 DPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHEA 154 (513)
Q Consensus 117 ~~l~~dIA~L~~lGirvVLVHGgg-pqI~~~L~~~Gi~~ 154 (513)
+.+.+-|..|++.|++++||.++. ..+...++.+|+..
T Consensus 83 ~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~ 121 (201)
T TIGR01491 83 DYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY 121 (201)
T ss_pred ccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe
Confidence 345666677888999999999984 45777788888764
No 128
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=23.54 E-value=2.6e+02 Score=30.36 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHhhhHHHhhcCCeEEEEeCCc--------cCCCCChHHHHHHHHH-HHhCCCeEEEEeCCh
Q 010333 79 EDEQFVKWFREAWPYLWAHRGGTFVVIISGE--------IVSSPYLDPILKDIAF-LHHLGIRFVLVPGTH 140 (513)
Q Consensus 79 ~~~~fv~~fR~a~pYi~~~rgkt~VIKlGGs--------~l~~~~l~~l~~dIA~-L~~lGirvVLVHGgg 140 (513)
+.++-+.++.+.+..-..+.||+++|--|+. .|++..--.+-..|+. +...|.+|+++||-.
T Consensus 165 ~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~ 235 (390)
T TIGR00521 165 EPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPV 235 (390)
T ss_pred CHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCC
Confidence 4555555555544322347899988877764 1222221224444554 677899999999875
No 129
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.49 E-value=3.7e+02 Score=28.67 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=47.6
Q ss_pred hhHHHHHHHH-hhhHHHhhcCCeEEEEeCCccCCCCC----------hHHHHHHHHHHH-hCCCeEEEEeCChHH
Q 010333 80 DEQFVKWFRE-AWPYLWAHRGGTFVVIISGEIVSSPY----------LDPILKDIAFLH-HLGIRFVLVPGTHVQ 142 (513)
Q Consensus 80 ~~~fv~~fR~-a~pYi~~~rgkt~VIKlGGs~l~~~~----------l~~l~~dIA~L~-~lGirvVLVHGggpq 142 (513)
+..|...|++ ..|-++.|+=..+||-.|-.+...+. +..+.+.+..+. ..+.+++.|-+||--
T Consensus 220 d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~ 294 (340)
T COG0123 220 DDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYN 294 (340)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCC
Confidence 5779999999 78999999999999999998887642 344444444432 237789999999743
No 130
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=23.27 E-value=1.2e+02 Score=29.88 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHcCCCc
Q 010333 119 ILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHEA 154 (513)
Q Consensus 119 l~~dIA~L~~lGirvVLVHGggp-qI~~~L~~~Gi~~ 154 (513)
..+=++.+++.|++++||+||-. .+++..+++|+..
T Consensus 82 a~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~ 118 (212)
T COG0560 82 AEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY 118 (212)
T ss_pred HHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch
Confidence 33445558889999999999966 4556666777653
No 131
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=23.04 E-value=50 Score=26.17 Aligned_cols=20 Identities=30% Similarity=0.595 Sum_probs=17.0
Q ss_pred cChHhHH-HhhhhhHhcCccc
Q 010333 457 TDLSGIK-QIIQPLVESGALV 476 (513)
Q Consensus 457 ~Dv~gI~-~Li~PLe~~GiLv 476 (513)
.|.+|++ ++.+||.++||.+
T Consensus 18 ~~~~Gv~a~i~~~La~~~I~i 38 (65)
T PF13840_consen 18 FDVPGVAAKIFSALAEAGINI 38 (65)
T ss_dssp TTSHHHHHHHHHHHHHTTS-E
T ss_pred CCcccHHHHHHHHHHHCCCCE
Confidence 5689999 9999999999965
No 132
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=22.26 E-value=3.6e+02 Score=23.61 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCChHH-HHHHHHHcCCCc
Q 010333 116 LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHEA 154 (513)
Q Consensus 116 l~~l~~dIA~L~~lGirvVLVHGggpq-I~~~L~~~Gi~~ 154 (513)
++.+.+-|..|++.|+++++|.++.+. +...++.+|+..
T Consensus 79 ~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~ 118 (176)
T PF13419_consen 79 YPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDD 118 (176)
T ss_dssp STTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGG
T ss_pred hhhhhhhhhhcccccceeEEeecCCccccccccccccccc
Confidence 344666666778889999999888544 778889998874
No 133
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=21.95 E-value=1.3e+02 Score=30.05 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=40.2
Q ss_pred hHHHHHHHHhhhHHHhhcCCe--EEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHcCCCc
Q 010333 81 EQFVKWFREAWPYLWAHRGGT--FVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEA 154 (513)
Q Consensus 81 ~~fv~~fR~a~pYi~~~rgkt--~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGg-gpqI~~~L~~~Gi~~ 154 (513)
-+|-+.||+-..-++..+-++ +|+|=.-. + .|.++++++ .|+..|.+|.|++|| ++.+.....++|++.
T Consensus 58 ~~F~eaL~~Rl~llqp~~~qv~~~v~~~k~~-l-T~Gi~eLv~---~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 58 ADFQEALAARLSLLQPLQVQVEQFVIKQKPT-L-TPGIRELVS---RLHARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CcHHHHHHHHHHHhcccHHHHHHHHhcCCCc-c-CCCHHHHHH---HHHHcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 345555665544444333221 33331111 1 123455544 589999999999999 666777777888874
No 134
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=21.55 E-value=3.3e+02 Score=26.69 Aligned_cols=52 Identities=21% Similarity=0.423 Sum_probs=39.0
Q ss_pred EEEEeCCccCCCCC-h-HHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHcCCC
Q 010333 102 FVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHE 153 (513)
Q Consensus 102 ~VIKlGGs~l~~~~-l-~~l~~dIA~L~~lGirvVLVHGggp-qI~~~L~~~Gi~ 153 (513)
|+.=+.|..+.+.. + +...+-|..|++.|++++++.|-.. .+...++++++.
T Consensus 2 i~~DlDGTLl~~~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 2 IFIDLDGTLLNDDHTISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred EEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 56678888887644 3 5667788889999999999998753 455567777765
No 135
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=21.33 E-value=2.6e+02 Score=26.24 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=30.4
Q ss_pred CeEEEEeCCccCCCCC--------------hHHHHHHHHHHHhCCCeEEEEeCCh
Q 010333 100 GTFVVIISGEIVSSPY--------------LDPILKDIAFLHHLGIRFVLVPGTH 140 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~--------------l~~l~~dIA~L~~lGirvVLVHGgg 140 (513)
|.+++=+.|.++..++ ++.+.+-|..|++.|++++||..+.
T Consensus 14 k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~ 68 (166)
T TIGR01664 14 KVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQS 68 (166)
T ss_pred cEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 5677777777665321 2567888888999999999998754
No 136
>PTZ00124 adenosine deaminase; Provisional
Probab=20.97 E-value=1e+03 Score=25.42 Aligned_cols=98 Identities=16% Similarity=0.244 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCh---HH----HHHHHHHcCCCccccCCccCCCHHHHHHHHHHHhHHHHHHHHhhCC
Q 010333 116 LDPILKDIAFLHHLGIRFVLVPGTH---VQ----IDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSP 188 (513)
Q Consensus 116 l~~l~~dIA~L~~lGirvVLVHGgg---pq----I~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G~l~~~L~a~Ls~ 188 (513)
+..+.+-.+.+++.|.+ +-+|-|- +. +.+.+..+|.+ +.-.|.++.+.+. +++
T Consensus 205 ~~~f~~~f~~Ar~~Gl~-~t~HaGE~~~~~~~~~v~~ai~~l~~~-RIGHG~~~~~d~~--------------l~~---- 264 (362)
T PTZ00124 205 LKPFKDIFDYVREAGVN-LTVHAGEDVTLPNLNTLYSAIQVLKVK-RIGHGIRVAESQE--------------LID---- 264 (362)
T ss_pred cHHHHHHHHHHHHCCCC-EEEEeCCCCCCCcchhHHHHHHHhCCC-ccccccccCCCHH--------------HHH----
Confidence 44555666667777877 5667662 21 22233344433 3344555543221 222
Q ss_pred CCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEcCC
Q 010333 189 GPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL 259 (513)
Q Consensus 189 g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIspv 259 (513)
.+.+.++. +.+++.| |+.+ |.+...+...++.+++.|.-+.||+.
T Consensus 265 -----~l~~~~I~-----lEvCPtS-N~~~---------------~~v~~~~~HPi~~l~~~Gv~v~InTD 309 (362)
T PTZ00124 265 -----MVKEKDIL-----LEVCPIS-NVLL---------------NNAKSMDTHPIRKLYDAGVKVSVNSD 309 (362)
T ss_pred -----HHHHcCCe-----EEECCcc-hhhh---------------hcCCchhhHHHHHHHHCCCcEEEeCC
Confidence 24455553 6666665 3332 23334556889999999986666653
No 137
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=20.70 E-value=5.6e+02 Score=27.38 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=56.4
Q ss_pred HHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcC--CCccccCCcc
Q 010333 84 VKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERG--HEAKYLGRYR 161 (513)
Q Consensus 84 v~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~G--i~~~~~~G~R 161 (513)
...|+++..|.|.+ |+.+.|.+-.....+ ..+.+.+.+..|.+.|..-|+|- -|.+=..+++.+ ++-..-.-..
T Consensus 48 ~~~l~e~i~~ah~~-gkk~~V~~N~~~~~~-~~~~~~~~l~~l~e~GvDaviv~--Dpg~i~l~~e~~p~l~ih~S~q~~ 123 (347)
T COG0826 48 VEDLAEAVELAHSA-GKKVYVAVNTLLHND-ELETLERYLDRLVELGVDAVIVA--DPGLIMLARERGPDLPIHVSTQAN 123 (347)
T ss_pred HHHHHHHHHHHHHc-CCeEEEEeccccccc-hhhHHHHHHHHHHHcCCCEEEEc--CHHHHHHHHHhCCCCcEEEeeeEe
Confidence 44599999999996 677777776555544 47778888888999999999984 455666777777 4432222335
Q ss_pred CCCHHHHH
Q 010333 162 ITDSESLA 169 (513)
Q Consensus 162 vTd~~~L~ 169 (513)
+|..++..
T Consensus 124 v~N~~~~~ 131 (347)
T COG0826 124 VTNAETAK 131 (347)
T ss_pred cCCHHHHH
Confidence 66665544
No 138
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=20.61 E-value=5.1e+02 Score=21.66 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=41.6
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCcc
Q 010333 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK 155 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~ 155 (513)
-+.+|+-+.+--.-|-. +..+..-+..+++.|.+++++ |-.+++.+.++..|+...
T Consensus 39 ~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~-~~~~~v~~~l~~~gl~~~ 95 (106)
T TIGR02886 39 IKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVC-NVSPAVKRLFELSGLFKI 95 (106)
T ss_pred CCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHHHhCCceE
Confidence 36788888776665543 666666667788899998877 456789999998887754
No 139
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=20.56 E-value=4.3e+02 Score=22.47 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=39.5
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCc
Q 010333 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA 154 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~ 154 (513)
+.+|+-+.+-..-|.. +..+.+-...++..|.+++++ |..+.+...+...|+..
T Consensus 49 ~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~-~~~~~v~~~l~~~~~~~ 103 (117)
T PF01740_consen 49 KNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLV-GLNPDVRRILERSGLID 103 (117)
T ss_dssp SEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEE-SHHHHHHHHHHHTTGHH
T ss_pred eEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHcCCCh
Confidence 6899998887655543 555655555688899998777 56778888888887763
No 140
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=20.03 E-value=3.3e+02 Score=25.52 Aligned_cols=51 Identities=24% Similarity=0.387 Sum_probs=34.7
Q ss_pred EEEEeCCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHcCC
Q 010333 102 FVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGH 152 (513)
Q Consensus 102 ~VIKlGGs~l~~~~--l~~l~~dIA~L~~lGirvVLVHGggp-qI~~~L~~~Gi 152 (513)
++.=+.|.++.+.. -+...+-|..|++.|+++++..|-.+ .+...+.++++
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~ 54 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGI 54 (254)
T ss_dssp EEEECCTTTCSTTSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTH
T ss_pred cEEEECCceecCCCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccc
Confidence 35567888887644 47788888889999999998887643 23344444443
Done!