Query 010333
Match_columns 513
No_of_seqs 316 out of 1719
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 04:32:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d2m_A Putative acetylglutamat 100.0 2.3E-59 7.8E-64 497.7 30.6 331 72-490 15-348 (456)
2 3s6g_A N-acetylglutamate kinas 100.0 3.7E-57 1.3E-61 483.0 21.9 304 86-491 41-354 (460)
3 2buf_A Acetylglutamate kinase; 100.0 4.4E-54 1.5E-58 436.3 33.8 279 80-446 7-297 (300)
4 2ap9_A NAG kinase, acetylgluta 100.0 3.7E-54 1.3E-58 436.3 31.4 281 77-447 3-292 (299)
5 2v5h_A Acetylglutamate kinase; 100.0 1.6E-53 5.4E-58 436.6 30.7 280 81-451 31-316 (321)
6 2rd5_A Acetylglutamate kinase- 100.0 1.7E-53 5.9E-58 431.4 28.5 277 79-445 16-298 (298)
7 4ab7_A Protein Arg5,6, mitocho 100.0 8.9E-54 3E-58 456.8 27.4 305 83-487 28-344 (464)
8 2bty_A Acetylglutamate kinase; 100.0 8.9E-53 3E-57 422.3 29.5 275 81-446 3-280 (282)
9 3s6k_A Acetylglutamate kinase; 100.0 2.8E-55 9.7E-60 469.1 8.6 302 87-490 45-356 (467)
10 3zzh_A Acetylglutamate kinase; 100.0 9.6E-50 3.3E-54 406.5 25.7 261 87-446 32-302 (307)
11 3l86_A Acetylglutamate kinase; 100.0 1.6E-47 5.4E-52 385.6 24.8 242 100-446 37-279 (279)
12 2egx_A Putative acetylglutamat 100.0 4.1E-44 1.4E-48 357.6 26.6 249 101-444 1-269 (269)
13 1gs5_A Acetylglutamate kinase; 100.0 6.5E-42 2.2E-46 339.1 26.2 253 99-445 2-258 (258)
14 3ll9_A Isopentenyl phosphate k 100.0 5.4E-41 1.8E-45 335.8 16.7 235 99-444 2-266 (269)
15 2e9y_A Carbamate kinase; trans 100.0 1.1E-39 3.8E-44 333.2 18.3 258 98-445 3-315 (316)
16 3k4o_A Isopentenyl phosphate k 100.0 1.5E-39 5.1E-44 325.2 17.4 240 96-446 2-265 (266)
17 2we5_A Carbamate kinase 1; arg 100.0 3.9E-39 1.3E-43 328.1 18.6 258 99-444 2-309 (310)
18 1e19_A Carbamate kinase-like c 100.0 6.1E-38 2.1E-42 320.2 19.9 259 99-445 2-314 (314)
19 3d40_A FOMA protein; fosfomyci 100.0 3.1E-37 1.1E-41 311.1 10.6 246 92-447 17-284 (286)
20 3ll5_A Gamma-glutamyl kinase r 100.0 7.6E-35 2.6E-39 288.1 14.0 226 99-443 3-248 (249)
21 4axs_A Carbamate kinase; oxido 100.0 1.2E-32 3.9E-37 283.3 24.1 272 89-445 12-332 (332)
22 3kzf_A Carbamate kinase; argin 100.0 9.6E-33 3.3E-37 281.1 20.6 259 98-446 4-317 (317)
23 2j5v_A Glutamate 5-kinase; pro 100.0 1.2E-32 4.2E-37 286.8 19.4 239 99-447 4-259 (367)
24 2ako_A Glutamate 5-kinase; str 100.0 8.3E-33 2.9E-37 272.5 15.1 229 100-444 2-251 (251)
25 2ogx_A Molybdenum storage prot 100.0 1.3E-32 4.6E-37 276.0 14.4 228 87-446 28-272 (276)
26 3ab4_A Aspartokinase; aspartat 100.0 3.5E-30 1.2E-34 272.3 22.4 260 99-477 1-294 (421)
27 2j4j_A Uridylate kinase; trans 100.0 2.9E-30 9.8E-35 250.7 19.7 210 100-445 1-225 (226)
28 4a7w_A Uridylate kinase; trans 100.0 5.9E-30 2E-34 252.0 20.3 219 98-444 6-240 (240)
29 2ogx_B Molybdenum storage prot 100.0 1.2E-30 4.3E-35 260.6 15.3 231 85-446 20-270 (270)
30 2ij9_A Uridylate kinase; struc 100.0 7.2E-30 2.5E-34 246.5 18.7 207 100-444 1-219 (219)
31 1z9d_A Uridylate kinase, UK, U 100.0 1E-28 3.4E-33 244.1 21.8 221 99-449 7-244 (252)
32 2brx_A Uridylate kinase; UMP k 100.0 1.6E-29 5.3E-34 249.1 15.2 211 99-445 19-244 (244)
33 1ybd_A Uridylate kinase; alpha 100.0 1.2E-27 4E-32 233.7 25.9 217 99-445 7-239 (239)
34 2va1_A Uridylate kinase; UMPK, 100.0 8.1E-28 2.8E-32 238.4 22.1 222 92-444 16-255 (256)
35 2a1f_A Uridylate kinase; PYRH, 100.0 4.2E-27 1.4E-31 231.7 23.4 219 99-447 8-242 (247)
36 3ek6_A Uridylate kinase; UMPK 100.0 3.4E-27 1.1E-31 232.8 20.6 218 98-445 8-241 (243)
37 2jjx_A Uridylate kinase, UMP k 99.9 5.3E-26 1.8E-30 225.1 23.1 218 98-446 11-247 (255)
38 3nwy_A Uridylate kinase; allos 99.9 4.3E-26 1.5E-30 229.7 20.7 216 99-444 50-280 (281)
39 3l76_A Aspartokinase; alloster 99.9 2.6E-23 9E-28 228.8 23.5 259 99-476 1-299 (600)
40 3c1m_A Probable aspartokinase; 99.8 3.9E-20 1.3E-24 198.3 22.4 265 101-477 2-350 (473)
41 2j0w_A Lysine-sensitive aspart 99.8 2E-17 6.8E-22 176.4 20.0 258 99-476 2-339 (449)
42 2cdq_A Aspartokinase; aspartat 99.7 7.8E-17 2.7E-21 174.3 23.7 266 97-476 24-372 (510)
43 3tvi_A Aspartokinase; structur 99.5 2E-14 6.8E-19 153.2 10.7 150 238-477 150-330 (446)
44 3e0k_A Amino-acid acetyltransf 94.0 0.037 1.3E-06 47.2 3.8 45 447-491 2-46 (150)
45 3men_A Acetylpolyamine aminohy 63.0 26 0.0009 36.1 9.2 64 80-143 273-343 (362)
46 3qgm_A P-nitrophenyl phosphata 60.7 16 0.00056 34.0 6.8 55 100-154 9-68 (268)
47 3zxn_A RSBS, anti-sigma-factor 60.6 33 0.0011 29.2 8.1 69 84-153 27-97 (123)
48 3q9b_A Acetylpolyamine amidohy 55.8 34 0.0011 35.0 8.5 61 80-140 255-322 (341)
49 3pdw_A Uncharacterized hydrola 50.7 24 0.00083 32.8 6.1 55 99-153 6-65 (266)
50 2gmw_A D,D-heptose 1,7-bisphos 50.4 25 0.00087 32.0 6.1 41 100-140 26-76 (211)
51 2pr7_A Haloacid dehalogenase/e 45.9 27 0.00093 28.4 5.0 55 100-154 3-59 (137)
52 3l8h_A Putative haloacid dehal 44.4 85 0.0029 27.0 8.4 57 100-156 2-87 (179)
53 3ib6_A Uncharacterized protein 42.4 1.1E+02 0.0037 27.0 8.9 41 116-156 36-80 (189)
54 4a69_A Histone deacetylase 3,; 42.1 71 0.0024 33.0 8.5 63 80-142 229-299 (376)
55 3max_A HD2, histone deacetylas 40.3 72 0.0024 32.9 8.1 63 80-142 228-298 (367)
56 4dgh_A Sulfate permease family 40.0 80 0.0027 26.5 7.2 68 85-154 36-104 (130)
57 2obb_A Hypothetical protein; s 38.3 45 0.0015 29.6 5.5 56 99-154 3-68 (142)
58 3gh1_A Predicted nucleotide-bi 37.3 26 0.0009 37.2 4.3 55 83-141 131-186 (462)
59 1zz1_A Histone deacetylase-lik 36.8 88 0.003 32.1 8.1 61 80-140 238-311 (369)
60 2fpr_A Histidine biosynthesis 33.9 47 0.0016 29.4 4.9 40 100-139 15-67 (176)
61 2p9j_A Hypothetical protein AQ 33.1 1.4E+02 0.0049 25.2 7.9 58 99-156 9-79 (162)
62 2wm8_A MDP-1, magnesium-depend 31.7 52 0.0018 29.0 4.9 41 116-156 70-112 (187)
63 2o2x_A Hypothetical protein; s 31.5 52 0.0018 29.8 4.9 42 100-141 32-83 (218)
64 3llo_A Prestin; STAS domain, c 30.7 1.5E+02 0.0052 25.0 7.6 57 98-155 63-120 (143)
65 4h89_A GCN5-related N-acetyltr 30.6 15 0.00052 31.8 1.1 25 450-474 10-34 (173)
66 3epr_A Hydrolase, haloacid deh 30.2 51 0.0018 30.7 4.8 54 100-153 6-64 (264)
67 1xpj_A Hypothetical protein; s 29.4 1.4E+02 0.0048 24.9 7.1 41 100-140 2-50 (126)
68 1wr8_A Phosphoglycolate phosph 28.3 1.3E+02 0.0046 27.3 7.3 54 100-153 4-60 (231)
69 2kln_A Probable sulphate-trans 28.0 1.7E+02 0.0058 24.4 7.3 56 99-155 48-104 (130)
70 1l6r_A Hypothetical protein TA 27.6 83 0.0028 29.0 5.7 54 100-153 6-62 (227)
71 3ghf_A Septum site-determining 26.7 1.2E+02 0.0041 26.0 6.1 54 97-154 45-99 (120)
72 1xvi_A MPGP, YEDP, putative ma 26.4 98 0.0034 29.2 6.1 54 100-153 10-66 (275)
73 3e8m_A Acylneuraminate cytidyl 25.8 1.3E+02 0.0043 25.6 6.2 35 123-157 40-75 (164)
74 3bq9_A Predicted rossmann fold 25.4 55 0.0019 34.8 4.3 53 85-141 131-184 (460)
75 2i33_A Acid phosphatase; HAD s 25.1 96 0.0033 29.7 5.8 71 83-153 37-144 (258)
76 3mmz_A Putative HAD family hyd 23.9 1.2E+02 0.0042 26.6 5.9 32 122-153 47-79 (176)
77 3pgv_A Haloacid dehalogenase-l 23.9 1.4E+02 0.0048 28.0 6.7 56 98-153 20-78 (285)
78 1k1e_A Deoxy-D-mannose-octulos 23.9 1.7E+02 0.0057 25.6 6.8 57 100-156 9-78 (180)
79 3ew8_A HD8, histone deacetylas 23.1 2.4E+02 0.0081 29.2 8.5 62 80-141 237-306 (388)
80 3fvv_A Uncharacterized protein 22.0 1.4E+02 0.0048 26.5 5.9 38 116-153 94-132 (232)
81 1rkq_A Hypothetical protein YI 21.4 1E+02 0.0035 29.1 5.1 53 100-152 6-61 (282)
82 1wek_A Hypothetical protein TT 21.2 2.4E+02 0.0082 26.6 7.6 56 81-143 23-80 (217)
83 2zos_A MPGP, mannosyl-3-phosph 21.2 99 0.0034 28.7 4.9 53 100-153 3-57 (249)
84 2vn2_A DNAD, chromosome replic 21.1 45 0.0015 28.6 2.3 51 449-499 55-105 (128)
85 2ka5_A Putative anti-sigma fac 20.9 2.4E+02 0.0081 23.4 6.8 57 99-156 52-109 (125)
86 1nrw_A Hypothetical protein, h 20.7 2E+02 0.0069 27.0 7.1 54 100-153 5-61 (288)
87 2hx1_A Predicted sugar phospha 20.7 1.2E+02 0.0043 28.2 5.5 55 99-153 14-73 (284)
88 2zg6_A Putative uncharacterize 20.7 88 0.003 27.9 4.3 40 117-156 98-137 (220)
89 3t6o_A Sulfate transporter/ant 20.3 1.1E+02 0.0038 25.2 4.6 72 84-156 32-106 (121)
90 3k1z_A Haloacid dehalogenase-l 20.3 2.3E+02 0.0077 26.0 7.2 39 118-156 110-148 (263)
91 2r8e_A 3-deoxy-D-manno-octulos 20.1 2.1E+02 0.0071 25.2 6.7 59 99-157 26-97 (188)
No 1
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=100.00 E-value=2.3e-59 Score=497.72 Aligned_cols=331 Identities=33% Similarity=0.511 Sum_probs=294.3
Q ss_pred ccCCCCCCh-hHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHc
Q 010333 72 EETYNPVED-EQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSER 150 (513)
Q Consensus 72 ~~~~~~~~~-~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~ 150 (513)
...++.|.+ .+|++|||+++|||++||+|++|||+||++++++++..++++|+.|++.|+++|||||||||++..++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~iViK~GG~~l~~~~~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~ 94 (456)
T 3d2m_A 15 VPRGSHMNAPDSFVAHFREAAPYIRQMRGTTLVAGIDGRLLEGGTLNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQ 94 (456)
T ss_dssp ----------CCHHHHHHHHHHHHHHHTTCEEEEEECGGGGTSTHHHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTT
T ss_pred CcCcccCCchhHHHHHHHHhHHHHHHhcCCEEEEEEChHHhcCchHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHC
Confidence 344666654 6799999999999999999999999999999988799999999999999999999999999999999999
Q ss_pred CCCccccCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCC-cceeeEeeecCCceeeeeecccccccc
Q 010333 151 GHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSS-RWHEVGVSVASGNFLAAKRKGVVDGVD 229 (513)
Q Consensus 151 Gi~~~~~~G~RvTd~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~-~~~av~l~~~dGnfvtA~p~GvidGvD 229 (513)
|++++|++|.|+|++++|+++.+++|+++..++++| . +|++. | .++++++.|++|+++++.|+++++|
T Consensus 95 ~~~~~~~~g~r~t~~~~l~~~~~~~G~~~~~l~~~l---------~-~g~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~d 163 (456)
T 3d2m_A 95 GRTPHYCRGLRVTDETSLGQAQQFAGTVRSRFEAAL---------C-GSVSGFA-RAPSVPLVSGNFLTARPIGVIDGTD 163 (456)
T ss_dssp TCCCCCGGGCCCBCHHHHHHHHHHHHHHHHHHHHHH---------H-TC---------CCCEECCSCEEEEECCEETTEE
T ss_pred CCCCEeeCCeecCCHHHHHHHHHHHhHHHHHHHHHH---------h-cccccCC-CccceeeccCcEEEEEEcccccCcc
Confidence 999999999999999999998666699999998874 4 55542 2 4588999999999999999888999
Q ss_pred CcccceEEEecHHHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-CCCccccccC
Q 010333 230 YGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLT 308 (513)
Q Consensus 230 ~g~tG~Vr~Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-~~g~lI~~Lt 308 (513)
++|+|+|+.+|.+.|+++|++|.|||++|++++.+|+++|+|+|++|+++|.+|+||+|||+|||+|++ .++++|++++
T Consensus 164 ~g~~g~v~~v~~~~i~~lL~~g~ipIi~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~~~~~i~~i~ 243 (456)
T 3d2m_A 164 MEYAGVIRKTDTAALRFQLDAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRPDGTLAETLS 243 (456)
T ss_dssp CBTBEEEEEECHHHHHHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCTTSCBCSEEE
T ss_pred cCceeeEEEECHHHHHHHHHCCCeEEECCcccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999984 5799999999
Q ss_pred HHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccc
Q 010333 309 LQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAI 388 (513)
Q Consensus 309 ~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~ 388 (513)
.+|+++++..+ +| |
T Consensus 244 ~~e~~~~~~~g-------------------------------------------------------~g-g---------- 257 (456)
T 3d2m_A 244 AQEAQSLAEHA-------------------------------------------------------AS-E---------- 257 (456)
T ss_dssp HHHHHHHHTTC-------------------------------------------------------CH-H----------
T ss_pred HHHHHHHHhcc-------------------------------------------------------CC-C----------
Confidence 99888775210 13 3
Q ss_pred cccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCCcccccccccChHhHHHhhhh
Q 010333 389 GGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQP 468 (513)
Q Consensus 389 g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ye~iR~A~~~Dv~gI~~Li~P 468 (513)
|.+||+||..|++.|++++||+|++.++.|+.++|++++.||+|.++.|-.||+|+.+|++.|.+|+++
T Consensus 258 -----------m~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~~~~~IR~a~~~D~~~i~~l~~~ 326 (456)
T 3d2m_A 258 -----------TRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHIAALIRP 326 (456)
T ss_dssp -----------HHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECCCCCEEEECCGGGHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecccceeeCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred hHhcCccccCCHHHHHHHhhcc
Q 010333 469 LVESGALVRRTDEEVRALALSD 490 (513)
Q Consensus 469 Le~~GiLv~Rs~e~le~~i~~~ 490 (513)
+++.+...+++++.+++.+..+
T Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~ 348 (456)
T 3d2m_A 327 LEEQGILLHRSREYLENHISEF 348 (456)
T ss_dssp HHHHTSSCCCCHHHHHHHGGGE
T ss_pred HHhcCCCccCCHHHHHHHHhhE
Confidence 9999999999999999988543
No 2
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=100.00 E-value=3.7e-57 Score=483.03 Aligned_cols=304 Identities=22% Similarity=0.299 Sum_probs=271.3
Q ss_pred HHHHhhhHHHhhcC----CeEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCcc
Q 010333 86 WFREAWPYLWAHRG----GTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYR 161 (513)
Q Consensus 86 ~fR~a~pYi~~~rg----kt~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~R 161 (513)
++||++|||++|+| +++|||+||+++++ .++++++||++|+..|+++|||||||||+++.++++|++++|++|+|
T Consensus 41 ~~re~~pyi~~f~~~~~~~~iViK~GGsv~~~-~l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~~G~R 119 (460)
T 3s6g_A 41 DGKEIREYLHRFSGIDQERFAVIKVGGAVIQD-DLPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAADIPTERVDGLR 119 (460)
T ss_dssp THHHHHHHHHHTSSSCGGGSEEEEECHHHHHH-CHHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHHSCCCCCCSSSC
T ss_pred CHHHHHHHHHHHhCCCCCCEEEEEEChHHhhh-HHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCCcc
Confidence 45699999999998 99999999997774 58999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecH
Q 010333 162 ITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV 241 (513)
Q Consensus 162 vTd~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~ 241 (513)
+||+++|+++.+++|++|..|+++ |.++|++ ++++++ ++| +|++ ++++||+++|+|+++|.
T Consensus 120 vTd~~~l~vv~~~lg~vn~~lv~a---------L~~~G~~----Av~lsg--~~~-~a~~---~~~~d~g~~G~I~~v~~ 180 (460)
T 3s6g_A 120 VTRDEAMPIIRDTLTQANLALVDA---------IRDAGGR----AAAVPR--GVF-EADI---VDADKLGRVGEPRHIHL 180 (460)
T ss_dssp CBCTTTHHHHHHHHHHHHHHHHHH---------HHHTTCC----EEEECS--SSE-EEEE---SCTTTTBSEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH---------HHhCCCC----ceEEec--CeE-EEEE---ecCcccCccCcceEEcH
Confidence 999999999977788999999875 6788887 677653 444 7875 57889999999999999
Q ss_pred HHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeeccccc-CCCCccccccCHH-HHHHHHHHh
Q 010333 242 TRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQ-EADSLIRQR 319 (513)
Q Consensus 242 ~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gl-d~~g~lI~~Lt~~-Ea~~ll~~~ 319 (513)
+.|+.+|++|.|||++|++++.+|+++|+|+|++|+++|.+|+||+|||+||++|+ ++++++|++++.. |++.++..+
T Consensus 181 ~~i~~lL~~g~IpVi~p~g~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~~~lI~~i~~~~e~~~l~~~~ 260 (460)
T 3s6g_A 181 DLVGSAARAGQAAILACLGETPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDEDGDILSSINLATDFGDLMQAD 260 (460)
T ss_dssp HHHHHHHHTTCEEEEECEEECTTCCEEEECHHHHHHHHHHHHCCSEEEEECSSCSCBCTTSSBCCEEEHHHHHHHHHHCS
T ss_pred HHHHHHHHCCcEEEEECceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCCccccCCCCeecceeCcHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999997 5689999999986 777775321
Q ss_pred hhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccC
Q 010333 320 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 399 (513)
Q Consensus 320 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~ 399 (513)
..+| |
T Consensus 261 -----------------------------------------------------~~tG-G--------------------- 265 (460)
T 3s6g_A 261 -----------------------------------------------------WVNG-G--------------------- 265 (460)
T ss_dssp -----------------------------------------------------SSCH-H---------------------
T ss_pred -----------------------------------------------------CCCC-c---------------------
Confidence 1134 4
Q ss_pred cHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCCcccccccc---cChHhHHHhhhhhHhcCccc
Q 010333 400 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKV---TDLSGIKQIIQPLVESGALV 476 (513)
Q Consensus 400 m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ye~iR~A~~---~Dv~gI~~Li~PLe~~GiLv 476 (513)
|.+||++|..|.+ |++++||++++.+++|+.|||+++|+||+|.++ |.+|.|++ .|+++|++||+|+++ |+||
T Consensus 266 M~~Kl~aa~~a~~-gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~--e~ir~a~~~~~~D~~~L~~LI~~~~~-~~Lv 341 (460)
T 3s6g_A 266 MRLKLEEIKRLLD-DLPLSSSVSITRPSELARELFTHAGSGTLIRRG--ERMVATDDKSSLDLGRLDNLVKAAFG-RPAV 341 (460)
T ss_dssp HHHHHHHHHHHHH-TSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC--CCEEEESCGGGSCHHHHHHHHHHHSS-SCBC
T ss_pred HHHHHHHHHHHHh-CCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC--CceEEeccCCcCCHHHHHHHHHHHcC-cccH
Confidence 9999999888776 777799999999999999999999999999998 99999999 999999999999999 9999
Q ss_pred cCCHHHHH-HHhhccc
Q 010333 477 RRTDEEVR-ALALSDF 491 (513)
Q Consensus 477 ~Rs~e~le-~~i~~~~ 491 (513)
+|.|+ .++..+|
T Consensus 342 ---~~~le~~~i~~~~ 354 (460)
T 3s6g_A 342 ---EGYWDRLRVDRAF 354 (460)
T ss_dssp ---TTHHHHCCCSEEE
T ss_pred ---HHHHhhcCcceEE
Confidence 46777 5554444
No 3
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=100.00 E-value=4.4e-54 Score=436.32 Aligned_cols=279 Identities=28% Similarity=0.452 Sum_probs=254.7
Q ss_pred hhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccC
Q 010333 80 DEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG 158 (513)
Q Consensus 80 ~~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~ 158 (513)
+.+|++|||+++|||++||+|++|||+||+++++++ +..+++||+.|++.|+++|||||||||++..++++|++++|++
T Consensus 7 ~~~~~~~~~~a~pyi~~~~~k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~~ 86 (300)
T 2buf_A 7 AAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFID 86 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSSHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCCBSS
T ss_pred hHHHHHHHHHHhHHHHHhcCCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccccC
Confidence 458999999999999999999999999999999876 7899999999999999999999999999999999999999999
Q ss_pred CccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeecccc--c-------cc
Q 010333 159 RYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVV--D-------GV 228 (513)
Q Consensus 159 G~RvTd~~~L~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~Gvi--d-------Gv 228 (513)
|+|+|++++|+.+ +.++|++++.|+++ |+++|++ ++++++.|++|+++++.+.. | ++
T Consensus 87 g~rvt~~~~l~~~~~~~~G~~~~~l~~~---------l~~~g~~----a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (300)
T 2buf_A 87 GMRVTDAATMDVVEMVLGGQVNKDIVNL---------INRHGGS----AIGLTGKDAELIRAKKLTVTRQTPEMTKPEII 153 (300)
T ss_dssp SSBCBCHHHHHHHHHHHHHTHHHHHHHH---------HHHTTCC----EEEEEETGGGCEEEEECCCCCC--------CC
T ss_pred CeecCCHHHHHHHHHHHHHHHHHHHHHH---------HHhCCCC----EEEecCCCCCeeeeeeccccccchhhcccccc
Confidence 9999999999997 56679999999886 5678876 78999999999999876543 3 46
Q ss_pred cCcccceEEEecHHHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-CCCcccccc
Q 010333 229 DYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFL 307 (513)
Q Consensus 229 D~g~tG~Vr~Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-~~g~lI~~L 307 (513)
|++|+|+|+++|.+.|+.+|++|.|||++|++++++|+.+|+|+|++|+.+|.+|+||+|+|+|||+|++ .++++|+++
T Consensus 154 d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~~a~~i~~i 233 (300)
T 2buf_A 154 DIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGL 233 (300)
T ss_dssp CCBSBEEEEEECHHHHHHHHHTTCEEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCTTSCBCCEE
T ss_pred cCCcceeEEEECHHHHHHHHHCCCEEEEcCceeCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECCCCcChhhC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999985 479999999
Q ss_pred CHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCcccccccc
Q 010333 308 TLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFA 387 (513)
Q Consensus 308 t~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~ 387 (513)
+.+|+++++..+ ..+| |
T Consensus 234 ~~~e~~~~~~~~-----------------------------------------------------~~~g-g--------- 250 (300)
T 2buf_A 234 STEQVNELIADG-----------------------------------------------------TIYG-G--------- 250 (300)
T ss_dssp CHHHHHHHHHTT-----------------------------------------------------CSCT-T---------
T ss_pred CHHHHHHHHHcC-----------------------------------------------------CCCC-c---------
Confidence 999988886321 1134 4
Q ss_pred ccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecC
Q 010333 388 IGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (513)
Q Consensus 388 ~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d 446 (513)
|.+|+++|..|+++|++|+||+|+..+++||.++|++++.||+|.++
T Consensus 251 ------------M~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 251 ------------MLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 297 (300)
T ss_dssp ------------HHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred ------------cHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence 99999999999999999999999999999889999999999999865
No 4
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=100.00 E-value=3.7e-54 Score=436.27 Aligned_cols=281 Identities=27% Similarity=0.375 Sum_probs=257.5
Q ss_pred CCChhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCcc
Q 010333 77 PVEDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK 155 (513)
Q Consensus 77 ~~~~~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~ 155 (513)
++.+.+|++|||+|+|||++||+|++||||||+++++++ +..++++|+.|++.|+++|||||||||++..+++++++++
T Consensus 3 ~~~~~~~~~~~~~a~pyi~~~~~k~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~ 82 (299)
T 2ap9_A 3 ALPTHIKAQVLAEALPWLKQLHGKVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEGD 82 (299)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTCEEEEEECTHHHHSHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCCC
T ss_pred cCChhhHHHHHHHHHHHHHHhCCCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCccc
Confidence 456789999999999999999999999999999999876 6799999999999999999999999999999999999999
Q ss_pred ccCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccc---cccccCc
Q 010333 156 YLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGV---VDGVDYG 231 (513)
Q Consensus 156 ~~~G~RvTd~~~L~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~Gv---idGvD~g 231 (513)
|++|+|+|++++|+++ +.++|+++..+++. |+++|++ ++++++.|++++++++.++ .+++|++
T Consensus 83 ~~~g~R~t~~~~l~~~~~~~~G~l~~~l~~~---------L~~~g~~----av~lt~~d~~~~~~~~~~~~~~~~~~d~g 149 (299)
T 2ap9_A 83 FKGGFRVTTPEVLDVARMVLFGQVGRELVNL---------INAHGPY----AVGITGEDAQLFTAVRRSVTVDGVATDIG 149 (299)
T ss_dssp CSSSSCCBCHHHHHHHHHHHHHTHHHHHHHH---------HTTSSSC----EEEEETTGGGCEEEEECCBCSSSCCBCCB
T ss_pred ccCCcccCCHHHHHHHHHHHhhHHHHHHHHH---------HHhCCCC----ceEechhHCCEEEEEecccccccccCCCC
Confidence 9999999999999987 66799999988776 5567776 6899999999999998875 2568999
Q ss_pred ccceEEEecHHHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC---C-CCcccccc
Q 010333 232 ATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---E-SGHLIRFL 307 (513)
Q Consensus 232 ~tG~Vr~Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld---~-~g~lI~~L 307 (513)
|+|+|+.++.+.|+++|++|.|||++|++++++|+.+|+|+|.+|+.+|.+|+||+|+|+|||+|++ | ++++|+++
T Consensus 150 ~~g~v~~v~~~~i~~lL~~g~IpVv~~v~~~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~~~~~i~~i 229 (299)
T 2ap9_A 150 LVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDRDSLVSEI 229 (299)
T ss_dssp SEEEEEEECHHHHHHHHHTTCEEEEESEEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTCTTCEESEE
T ss_pred cceeEEEecHHHHHHHHhCCCeEEECCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCCCCcChhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999973 3 58999999
Q ss_pred CHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCcccccccc
Q 010333 308 TLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFA 387 (513)
Q Consensus 308 t~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~ 387 (513)
+.+|+++++. +++| |
T Consensus 230 s~~e~~~l~~-------------------------------------------------------~~~g-g--------- 244 (299)
T 2ap9_A 230 DTGTLAQLLP-------------------------------------------------------TLEL-G--------- 244 (299)
T ss_dssp EHHHHHHHGG-------------------------------------------------------GSCT-T---------
T ss_pred CHHHHHHHHH-------------------------------------------------------hhcC-c---------
Confidence 9998887742 1145 5
Q ss_pred ccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCC
Q 010333 388 IGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (513)
Q Consensus 388 ~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ 447 (513)
|.+|++||..|+++|++|+||+|++.+++||.|+|+++++||+|.+++
T Consensus 245 ------------M~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~~ 292 (299)
T 2ap9_A 245 ------------MVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRGE 292 (299)
T ss_dssp ------------THHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECCC
T ss_pred ------------hHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecCC
Confidence 999999999999999999999999999998899999999999998876
No 5
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=100.00 E-value=1.6e-53 Score=436.64 Aligned_cols=280 Identities=29% Similarity=0.461 Sum_probs=253.0
Q ss_pred hHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCC
Q 010333 81 EQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGR 159 (513)
Q Consensus 81 ~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G 159 (513)
.+|++|||+|+|||++||+|++|||+||+++++++ +..++++|+.|++.|+++|||||||||++..++++|++++|++|
T Consensus 31 ~~~~~~~~~a~pyi~~~~~k~iVIKlGGs~l~~~~~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~~g 110 (321)
T 2v5h_A 31 ADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNG 110 (321)
T ss_dssp CCHHHHHHHTHHHHHHTTTCEEEEEECTHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCBSSS
T ss_pred hhHHHHHHHHHHHHHHhCCCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCccccCC
Confidence 47999999999999999999999999999999876 68999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEE
Q 010333 160 YRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKK 238 (513)
Q Consensus 160 ~RvTd~~~L~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~ 238 (513)
+|+|++++|+.+ ++++|++|..|+++ |+++|++ ++++++.+++++++++.+ ++|++++|+|+.
T Consensus 111 ~Rvt~~~~l~~~~~~~~G~in~~l~~~---------L~~~g~~----a~gl~~~~a~~l~a~~~~---~~d~g~~g~v~~ 174 (321)
T 2v5h_A 111 LRVTDADTMEVVEMVLVGRVNKDIVSR---------INTTGGR----AVGFCGTDGRLVLARPHD---QEGIGFVGEVNS 174 (321)
T ss_dssp SBCBCHHHHHHHHHHHHHTHHHHHHHH---------HHHHTCC----EEEECTTGGGSEEEEECS---SCSSBSBEEEEE
T ss_pred cccCCHHHHHHHHHHHhChHHHHHHHH---------HHhCCCC----eeeeChhhccEEEeecCC---CccccccceeEE
Confidence 999999999997 56789999988876 6678876 788999999999999875 379999999999
Q ss_pred ecHHHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC---C-CCccccccCHHHHHH
Q 010333 239 VDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---E-SGHLIRFLTLQEADS 314 (513)
Q Consensus 239 Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld---~-~g~lI~~Lt~~Ea~~ 314 (513)
+|.+.|+++|++|.|||++|++++.+|+.+|+|+|++|+.+|.+|+||+|||+|||+|++ | ++++|++++.+|+++
T Consensus 175 v~~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~~a~~i~~is~~e~~~ 254 (321)
T 2v5h_A 175 VNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRE 254 (321)
T ss_dssp ECGGGTHHHHHTTCEEEEESEEECTTSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTCTTCBCCEEEHHHHHH
T ss_pred ecHHHHHHHHHCCCeEEEeCceECCCCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCCCCeeeeEEcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999984 2 589999999999988
Q ss_pred HHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchh
Q 010333 315 LIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERL 394 (513)
Q Consensus 315 ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~ 394 (513)
++..+ ..+| |
T Consensus 255 l~~~g-----------------------------------------------------~~~g-G---------------- 264 (321)
T 2v5h_A 255 LIAQG-----------------------------------------------------IVGG-G---------------- 264 (321)
T ss_dssp HHHTT-----------------------------------------------------SSCT-T----------------
T ss_pred HHhCC-----------------------------------------------------CCcC-c----------------
Confidence 86321 1134 4
Q ss_pred ccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCCccc
Q 010333 395 SRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGT 451 (513)
Q Consensus 395 ~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ye~i 451 (513)
|.+|++||..|+++|++|+||+|++.+++||.++|++++.||+|.++.||.-
T Consensus 265 -----M~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~~~~~~ 316 (321)
T 2v5h_A 265 -----MIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGYHEA 316 (321)
T ss_dssp -----HHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC-----
T ss_pred -----HHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECCccccc
Confidence 9999999999999999999999999999988999999999999999999854
No 6
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=100.00 E-value=1.7e-53 Score=431.40 Aligned_cols=277 Identities=26% Similarity=0.429 Sum_probs=251.4
Q ss_pred ChhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCcccc
Q 010333 79 EDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYL 157 (513)
Q Consensus 79 ~~~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~ 157 (513)
.+.+|++|||+|+|||++||+|++|||+||+++++++ +..++++|+.|++.|+++|||||||||++..+++++++++|+
T Consensus 16 ~~~~~~~~~~~a~pyi~~~~~k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~~ 95 (298)
T 2rd5_A 16 SPDYRVEILSESLPFIQKFRGKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFR 95 (298)
T ss_dssp --CHHHHHHHHTHHHHHHTTTCEEEEEECTHHHHCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEE
T ss_pred ChHHHHHHHHHHHHHHHHhcCCEEEEEECchhhCChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCcccc
Confidence 4678999999999999999999999999999999876 689999999999999999999999999999999999999999
Q ss_pred CCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceE
Q 010333 158 GRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV 236 (513)
Q Consensus 158 ~G~RvTd~~~L~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~V 236 (513)
+|+|+||+++|+.+ +.++|++|..+++. |+++|++ ++++++.+++++++++.+ +++|++|+|++
T Consensus 96 ~g~R~t~~~~l~~~~~~~~G~~n~~l~~~---------l~~~g~~----a~~l~~~~~~~l~~~~~~--~~~d~g~~g~v 160 (298)
T 2rd5_A 96 DGLRVTDATTMEIVSMVLVGKVNKNLVSL---------INAAGAT----AVGLSGHDGRLLTARPVP--NSAQLGFVGEV 160 (298)
T ss_dssp TTEECBCHHHHHHHHHHHHHTHHHHHHHH---------HHHTTSC----EEEEETTGGGCEEEEECT--THHHHBSEEEE
T ss_pred CCcccCCHHHHHHHHHHHhchHHHHHHHH---------HHhCCCC----ccccChHHCCEEEEEeCC--ccccCCcceEE
Confidence 99999999999987 55679999888775 6788876 789999999999999875 44689999999
Q ss_pred EEecHHHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC---C-CCccccccCHHHH
Q 010333 237 KKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---E-SGHLIRFLTLQEA 312 (513)
Q Consensus 237 r~Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld---~-~g~lI~~Lt~~Ea 312 (513)
+++|.+.|+++|++|.|||++|++++++|+.+|+|+|++|+.+|.+|+||+|+|+|||+|++ | ++++|++++.+|+
T Consensus 161 ~~v~~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~~a~~i~~is~~e~ 240 (298)
T 2rd5_A 161 ARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIKGV 240 (298)
T ss_dssp EEECGGGHHHHHHTTCEEEEESEEECTTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSCTTSEECEEEHHHH
T ss_pred EEECHHHHHHHHhCCCEEEEcCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCCCCCCcccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999983 2 3899999999999
Q ss_pred HHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccc
Q 010333 313 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 392 (513)
Q Consensus 313 ~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~ 392 (513)
++++..+. .+| |
T Consensus 241 ~~~~~~g~-----------------------------------------------------~~g-G-------------- 252 (298)
T 2rd5_A 241 KKMIEDGK-----------------------------------------------------VAG-G-------------- 252 (298)
T ss_dssp HHHHHTTS-----------------------------------------------------SCT-T--------------
T ss_pred HHHHHCCC-----------------------------------------------------CCC-c--------------
Confidence 88863211 134 5
Q ss_pred hhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEec
Q 010333 393 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (513)
Q Consensus 393 ~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~ 445 (513)
|.+|++||..|+++|++|+||+|++.+++||.|+|++++.||+|.+
T Consensus 253 -------M~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 253 -------MIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp -------HHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred -------hHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 9999999999999999999999999999988999999999999964
No 7
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=100.00 E-value=8.9e-54 Score=456.76 Aligned_cols=305 Identities=22% Similarity=0.310 Sum_probs=250.6
Q ss_pred HHHHHHHhhhHHHhhcC----CeEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccC
Q 010333 83 FVKWFREAWPYLWAHRG----GTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG 158 (513)
Q Consensus 83 fv~~fR~a~pYi~~~rg----kt~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~ 158 (513)
-+...||+.|||+.||+ +++|||+||+++++ .++++++||++|+..|+++|||||||||+++.++++|++++|++
T Consensus 28 ~~~~~re~~~yl~~F~~~~~~~~iVIK~GGsv~~~-~l~~la~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~~ 106 (464)
T 4ab7_A 28 NISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISD-NLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYID 106 (464)
T ss_dssp ---------------------CCEEEEECHHHHHH-CHHHHHHHHHHHHHTTCCCEEEECCCHHHHHHHHHTTCCCCEET
T ss_pred hcCChhhHHHHHHHHhCCCCCceEEEEECHHHhhc-hHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccccC
Confidence 45567889999999998 89999999999875 58999999999999999999999999999999999999999999
Q ss_pred CccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEE
Q 010333 159 RYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKK 238 (513)
Q Consensus 159 G~RvTd~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~ 238 (513)
|+|+||+++|+++.+++|++|..|+++ |+++|++ +++++ |++++++| ++++||+|+|+|++
T Consensus 107 G~RvTd~~tl~vv~mv~~~vn~~lv~~---------L~~~G~~----Avgls---gg~~~a~~---~~~~d~g~vG~I~~ 167 (464)
T 4ab7_A 107 GIRITDEHTMAVVRKCFLEQNLKLVTA---------LEQLGVR----ARPIT---SGVFTADY---LDKDKYKLVGNIKS 167 (464)
T ss_dssp TEECBCHHHHHHHHHHHHHHHHHHHHH---------HHHTTCC----EEEEC---SSSEEEEE---SCTTTTBSBEEEEE
T ss_pred CeecCCHHHHHHHHHHHHHHHHHHHHH---------HHhCCCC----eEEEC---CCcEEEEe---cCccccCCcCcccc
Confidence 999999999999977789999998775 6788887 67775 35668887 47889999999999
Q ss_pred ecHHHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC--CCCccccccCHHH-HHHH
Q 010333 239 VDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD--ESGHLIRFLTLQE-ADSL 315 (513)
Q Consensus 239 Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld--~~g~lI~~Lt~~E-a~~l 315 (513)
+|++.|+.+|++|.|||++|++++.+|+++|+|+|++|+++|.+|+||+|||+||++|++ +++++|++++..| ++++
T Consensus 168 v~~~~I~~lL~~G~IPVi~~~g~~~~G~~~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~~~~~lI~~it~~e~~~~l 247 (464)
T 4ab7_A 168 VTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDL 247 (464)
T ss_dssp ECCHHHHHHHHTTCEEEEESEEECTTCBEEECCHHHHHHHHHHHHCCSEEEEEESSCSEECTTTCCEECEEEHHHHHHHH
T ss_pred cCHHHHHHHHHCCcEEEEcCCcCCCCCCEEEecHHHHHHHHHHHcCCCEEEEEecccccccCCCCcCCcccCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999973 3799999999875 5656
Q ss_pred HHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhc
Q 010333 316 IRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLS 395 (513)
Q Consensus 316 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~ 395 (513)
+.++ ..+| |
T Consensus 248 i~~~-----------------------------------------------------~~tg-G----------------- 256 (464)
T 4ab7_A 248 MKQS-----------------------------------------------------WVKY-G----------------- 256 (464)
T ss_dssp HTCS-----------------------------------------------------SCCH-H-----------------
T ss_pred HhcC-----------------------------------------------------CCCC-c-----------------
Confidence 5210 1134 4
Q ss_pred cccCcHHHHHHHHHHHHc---CCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCCcccccccccChHhHHHhhhhhHhc
Q 010333 396 RLNGYLSELAAAAFVCRR---GVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVES 472 (513)
Q Consensus 396 ~~~~m~~KL~AA~~A~~~---GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ye~iR~A~~~Dv~gI~~Li~PLe~~ 472 (513)
|.+||+||..|++. | ..++|++ +++|+.|+|+++|+||+|.++ ||.+|.|+++||+++.+|.++|+++
T Consensus 257 ----M~pKl~aa~aa~~~v~~g-~~v~I~~---~~~ll~eLft~~g~GT~I~~~-~~~~r~a~~~dv~~~~~L~~lL~~s 327 (464)
T 4ab7_A 257 ----TKLKIREIKELLDYLPRS-SSVAIIN---VQDLQKELFTDSGAGTMIRRG-YKLVKRSSIGEFPSADALRKALQRD 327 (464)
T ss_dssp ----HHHHHHHHHHHHTTSCTT-CEEEEEE---STTHHHHTTSSSTTSEEEECC-CCCEEESSGGGSSCHHHHHHHHTTS
T ss_pred ----HHHHHHHHHHHHHhcccC-cEEEEec---ChHHHHHHhcCCCCceEEecC-ccccccCChhhhcCHHHHHHHHHhc
Confidence 99999955444432 4 5689998 678899999999999999999 9999999999999999999999997
Q ss_pred C--ccccCCHHHHHHHh
Q 010333 473 G--ALVRRTDEEVRALA 487 (513)
Q Consensus 473 G--iLv~Rs~e~le~~i 487 (513)
. -.-+.+.+...+.+
T Consensus 328 ~~~~~~~~~v~~y~~~L 344 (464)
T 4ab7_A 328 AGISSGKESVASYLRYL 344 (464)
T ss_dssp TTTSSSSSCHHHHHHHH
T ss_pred ccccchhhhHHHHHHHh
Confidence 3 44555666665554
No 8
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=100.00 E-value=8.9e-53 Score=422.35 Aligned_cols=275 Identities=28% Similarity=0.447 Sum_probs=250.6
Q ss_pred hHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCC
Q 010333 81 EQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGR 159 (513)
Q Consensus 81 ~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G 159 (513)
.+|++|||+++|||++||+|++|||+||+++++++ +.+++++|+.|++.|+++|||||||||++..+++++++++|++|
T Consensus 3 ~~~~~~~~~~~pyi~~~~~~~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~~~~~~~~g 82 (282)
T 2bty_A 3 IDTVNVLLEALPYIKEFYGKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNG 82 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEECSHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCBSSS
T ss_pred hHHHHHHHHHHHHHHHhcCCeEEEEECchhhCChhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCCccccCC
Confidence 46899999999999999999999999999999876 78999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEE
Q 010333 160 YRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKK 238 (513)
Q Consensus 160 ~RvTd~~~L~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~ 238 (513)
+|+||+++|+.+ +.++|+++..++++ |+++|++ ++++++.+++++++++.++ +.|++|+|+|++
T Consensus 83 ~r~t~~~~l~~~~~~~~G~~~~~l~~~---------l~~~g~~----a~~l~~~~~~~l~~~~~~~--~~d~g~~g~v~~ 147 (282)
T 2bty_A 83 HRVTDEKTMEIVEMVLVGKINKEIVMN---------LNLHGGR----AVGICGKDSKLIVAEKETK--HGDIGYVGKVKK 147 (282)
T ss_dssp SBCBCHHHHHHHHHHHHHTHHHHHHHH---------HHTTTCC----EEEEETTGGGSEEEEECCT--TCCCBSBEEEEE
T ss_pred cccCCHHHHHHHHHHHhhHHHHHHHHH---------HHhCCCC----ceecChhhCCEEEEecCCc--ccCCCcceEEEE
Confidence 999999999987 55679999988776 6678876 7899999999999998764 568999999999
Q ss_pred ecHHHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-CCCccccccCHHHHHHHHH
Q 010333 239 VDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIR 317 (513)
Q Consensus 239 Vd~~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-~~g~lI~~Lt~~Ea~~ll~ 317 (513)
+|.+.|+++|++|.|||++|++++++|+.+|+|+|++|+.+|.+|+||+|+|+|||||++ .+ ++|++++.+|+++++.
T Consensus 148 ~~~~~i~~ll~~g~IpVi~~v~~~~~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~~-~~i~~i~~~e~~~~~~ 226 (282)
T 2bty_A 148 VNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKDG-KLISTLTPDEAEELIR 226 (282)
T ss_dssp ECTHHHHHHHHTTCEEEEESEEECSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEETT-EECCEECHHHHHHHHT
T ss_pred ecHHHHHHHHHCCCEEEECCCccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecCc-hhhhhCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999984 33 9999999999888752
Q ss_pred HhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccc
Q 010333 318 QRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRL 397 (513)
Q Consensus 318 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~ 397 (513)
.+ ..+| |
T Consensus 227 ~g-----------------------------------------------------~~~g-G------------------- 233 (282)
T 2bty_A 227 DG-----------------------------------------------------TVTG-G------------------- 233 (282)
T ss_dssp TT-----------------------------------------------------CSCT-T-------------------
T ss_pred cC-----------------------------------------------------CCCC-c-------------------
Confidence 21 1134 5
Q ss_pred cCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecC
Q 010333 398 NGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (513)
Q Consensus 398 ~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d 446 (513)
|.+|++||..|+++|++++||+|++.+++||.++|++++.||+|.++
T Consensus 234 --M~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 280 (282)
T 2bty_A 234 --MIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL 280 (282)
T ss_dssp --HHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred --HHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence 99999999999999999999999999999889999999999999865
No 9
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.8e-55 Score=469.06 Aligned_cols=302 Identities=24% Similarity=0.355 Sum_probs=267.7
Q ss_pred HHHhhhHHHhhcC----CeEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccC
Q 010333 87 FREAWPYLWAHRG----GTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRI 162 (513)
Q Consensus 87 fR~a~pYi~~~rg----kt~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~Rv 162 (513)
+|++.|||++|+| +++|||+||+++++ .++++++||++|+..|+++|||||||||+++.++++|++++|++|+|+
T Consensus 45 ~re~~pyi~~f~~~~~~~~iViK~GG~v~~~-~l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~~~gi~~~f~~G~Rv 123 (467)
T 3s6k_A 45 AKEISQYLKRFSQLDAKRFAVVKVGGAVLRD-DLEALTSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEKQTVNGLRV 123 (467)
T ss_dssp HHHHHHHHHSSSSSCSTTSCCCCCCHHHHTT-CCHHHHHHHHHHHTTSCCCCCCCCCCHHHHHHHHTTSCCCCCCSSSCC
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEEChHHhhh-HHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCCccC
Confidence 4599999999998 99999999997775 589999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHH
Q 010333 163 TDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 242 (513)
Q Consensus 163 Td~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~ 242 (513)
||+++|+++.+++|++|..|+++ |.++|++ ++++++ ++ ++|++ ++++||+|+|+|+++|.+
T Consensus 124 Td~~~l~vv~~~~g~vn~~Lv~a---------L~~~G~~----Av~lsg--~~-~~a~~---~~~~d~g~~G~I~~v~~~ 184 (467)
T 3s6k_A 124 TSPHALAIVRKVFQASNLKLVEA---------LQQNGAR----ATSITG--GV-FEAEY---LNRDTYGLVGEVKAVNLA 184 (467)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHH---------HHHHTCC----BCCCCS--SS-BCCCB---SCSSSSBSBBCCCCBCCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH---------HHhCCCC----ceEEcC--cc-EEEEe---ccCcccCccceEEEEcHH
Confidence 99999999977778999999875 6788887 555543 34 46764 578899999999999999
Q ss_pred HHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeeccccc-CCCCccccccCHH-HHHHHHHHhh
Q 010333 243 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQ-EADSLIRQRV 320 (513)
Q Consensus 243 ~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gl-d~~g~lI~~Lt~~-Ea~~ll~~~~ 320 (513)
.|+.+|++|.|||++|++++.+|+++|+|+|++|+++|.+|+||+|||+||++|+ ++++++|++++.. |+++++..+
T Consensus 185 ~i~~lL~~g~IpVi~pvg~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~~~lI~~i~~~~e~~~l~~~~- 263 (467)
T 3s6k_A 185 PIEASLQAGSIPVITSLGETPSGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDAEGKLIDSINLSTEYDHLMQQP- 263 (467)
T ss_dssp HHHTHHHHTCBCCCCSCCCCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCSSCSCCCSSCCCCCCCCTTTTTHHHHTSS-
T ss_pred HHHHHHHCCCEEEEECceECCCCcEEecCHHHHHHHHHHhcCCCEEEEEecccceeCCCCCCccccChHHHHHHHHhcC-
Confidence 9999999999999999999999999999999999999999999999999999998 4689999999985 666665210
Q ss_pred hhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCc
Q 010333 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (513)
Q Consensus 321 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m 400 (513)
..+| | |
T Consensus 264 ----------------------------------------------------~~tG-G---------------------M 269 (467)
T 3s6k_A 264 ----------------------------------------------------WING-G---------------------M 269 (467)
T ss_dssp ----------------------------------------------------SCCS-H---------------------H
T ss_pred ----------------------------------------------------CCCC-c---------------------h
Confidence 1134 4 9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCCcccccccc---cChHhHHHhhhhhHhcCcccc
Q 010333 401 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKV---TDLSGIKQIIQPLVESGALVR 477 (513)
Q Consensus 401 ~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ye~iR~A~~---~Dv~gI~~Li~PLe~~GiLv~ 477 (513)
.+||++|..|.+ |++++|+++++.+++|+.|||+++|+||+|.++ |.+|.|+. .|+++|++||+|+++ |+||
T Consensus 270 ~~Kl~aa~~a~~-gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~--e~ir~a~~~~~~D~~~L~~LI~~~~~-~~Lv- 344 (467)
T 3s6k_A 270 RVKIEQIKDLLD-RLPLESSVSITRPADLAKELFTHKGSGTLVRRG--ERVLRATSWDELDLPRLTSLIESSFG-RTLV- 344 (467)
T ss_dssp HHHHHHHHHHHT-TSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC--CCEEEESSTTSSCHHHHHHHHHHHSS-SCCC-
T ss_pred HHHHHHHHHHHh-CCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC--CceEEccccCcCCHHHHHHHHHHhhc-cchH-
Confidence 999999888765 777799999999999999999999999999998 89999999 999999999999999 9999
Q ss_pred CCHHHHH-HHhhcc
Q 010333 478 RTDEEVR-ALALSD 490 (513)
Q Consensus 478 Rs~e~le-~~i~~~ 490 (513)
||.|+ .++..+
T Consensus 345 --~~yle~~~i~~~ 356 (467)
T 3s6k_A 345 --PDYFSNTKLLRA 356 (467)
T ss_dssp --TTCTTTCCCSEE
T ss_pred --HHHHhccCceEE
Confidence 56777 455333
No 10
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=100.00 E-value=9.6e-50 Score=406.46 Aligned_cols=261 Identities=25% Similarity=0.345 Sum_probs=229.4
Q ss_pred HHHhhhHHHhhcC----CeEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccC
Q 010333 87 FREAWPYLWAHRG----GTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRI 162 (513)
Q Consensus 87 fR~a~pYi~~~rg----kt~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~Rv 162 (513)
.||+.|||+.||+ +++|||+||+++++ .++++++||++|+..|+++|||||||||++++++++|++++|++|+|+
T Consensus 32 ~re~~~yi~~f~~~~~~~~iViK~GGsv~~~-~~~~~~~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~~~~G~Rv 110 (307)
T 3zzh_A 32 KREVEQYLKYFTSVSQQQFAVIKVGGAIISD-NLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRI 110 (307)
T ss_dssp HHHHHHHHHHHHCCCCSCCEEEEECHHHHHH-SHHHHHHHHHHHHHBTCCEEEEECCHHHHHHHHHHTTCCCCEETTEEC
T ss_pred hhhHHHHHHHHhCCCCCCEEEEEEChHHhhc-hHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHcCCCccccCCeec
Confidence 4679999999999 99999999998875 589999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHH
Q 010333 163 TDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 242 (513)
Q Consensus 163 Td~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~ 242 (513)
||+++|+++.+++|++|..|+++ |.++|++ ++++++ ++++++| +|++||+|+|+|+++|.+
T Consensus 111 Td~~~l~vv~m~~~~vn~~lv~~---------L~~~G~~----Av~l~g---g~~~a~~---~~~~d~g~~G~i~~v~~~ 171 (307)
T 3zzh_A 111 TDEHTMAVVRKCFLEQNLKLVTA---------LEQLGVR----ARPITS---GVFTADY---LDKDKYKLVGNIKSVTKE 171 (307)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHH---------HHHTTCC----EEEECS---SSEEEEE---SCHHHHBSBEEEEEECCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH---------HHhCCCC----eeEEcC---CcEEEEe---cCccccCccccccccCHH
Confidence 99999999977788999999765 6788887 677753 4568887 478899999999999999
Q ss_pred HHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC--CCCccccccCHHH-HHHHHHHh
Q 010333 243 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD--ESGHLIRFLTLQE-ADSLIRQR 319 (513)
Q Consensus 243 ~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld--~~g~lI~~Lt~~E-a~~ll~~~ 319 (513)
.|+.+|++|+|||++|++++.+|+++|+|+|++|+++|.+|+||+|||+||++|++ +++++|++++..| +++++.++
T Consensus 172 ~i~~lL~~g~IpVi~~~g~~~~G~~~~i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~~~~~~i~~i~~~e~~~~l~~~~ 251 (307)
T 3zzh_A 172 PIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQS 251 (307)
T ss_dssp HHHHHHHHTCEEEECCCEECTTCBEEBCCHHHHHHHHHHHHCCSEEEEECSSCSCEETTTTEECCEEEHHHHHHHHHTST
T ss_pred HHHHHHHCCCEEEEeCCeECCCCcEEecCHHHHHHHHHHhCCCCEEEEEeCCcceecCCCCcCCcccCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999984 5899999999875 56665211
Q ss_pred hhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccC
Q 010333 320 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 399 (513)
Q Consensus 320 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~ 399 (513)
+.+| |
T Consensus 252 -----------------------------------------------------~~tG-G--------------------- 256 (307)
T 3zzh_A 252 -----------------------------------------------------WVKY-G--------------------- 256 (307)
T ss_dssp -----------------------------------------------------TSCH-H---------------------
T ss_pred -----------------------------------------------------CCCC-c---------------------
Confidence 1134 4
Q ss_pred cHHHHHHHHHHHHc---CCCEEEEecCCCchhhHHHHHcCCCCeeEEecC
Q 010333 400 YLSELAAAAFVCRR---GVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (513)
Q Consensus 400 m~~KL~AA~~A~~~---GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d 446 (513)
|.+||+||..|++. |. .++|++ +++|+.|+|+++++||+|.+.
T Consensus 257 M~~Kl~aa~~a~~~v~~g~-~v~I~~---~~~ll~elft~~g~GT~I~~~ 302 (307)
T 3zzh_A 257 TKLKIREIKELLDYLPRSS-SVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (307)
T ss_dssp HHHHHHHHHHHHHHSCTTC-CEEEEC---GGGHHHHHHSCCCCSEEEECC
T ss_pred HHHHHHHHHHHHHHhccCe-EEEEeC---ccHHHHHHhcCCCCcEEEecC
Confidence 99999965544444 64 599998 788899999999999999875
No 11
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=100.00 E-value=1.6e-47 Score=385.57 Aligned_cols=242 Identities=26% Similarity=0.364 Sum_probs=221.9
Q ss_pred CeEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHH-HHHHhHH
Q 010333 100 GTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGI 178 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a-~~a~G~l 178 (513)
|+||||+||+++++ .++++++||++|++.|+++||||||+|++++.++++|++++|++|+|+|++++|+++ ++++|++
T Consensus 37 k~iVIKiGGs~l~~-~~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg~~~~~~~G~Rvtd~~~l~~v~~~l~G~l 115 (279)
T 3l86_A 37 DIIVIKIGGVASQQ-LSGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQVPVKKINGLRVTSKDDMVLVSHALLDLV 115 (279)
T ss_dssp CEEEEEECTTGGGS-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHHHHHHHHHHTT
T ss_pred ceEEEEEChHHHHh-HHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcCCCCccCCCcccCcHHHHHHHHHHHHHHH
Confidence 79999999999987 488999999999999999999999999999999999999999999999999999998 4579999
Q ss_pred HHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEEEcC
Q 010333 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN 258 (513)
Q Consensus 179 ~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIsp 258 (513)
|..++++ |+++|++ ++++++.|+||++++|. |++||+++|+|+++|.+.|+.+|++|+|||++|
T Consensus 116 n~~i~~~---------L~~~G~~----a~~l~g~dg~llta~~~---~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi~~ 179 (279)
T 3l86_A 116 GKNLQEK---------LRQAGVS----CQQLKSDIKHVVAADYL---DKDTYGYVGDVTHINKRVIEEFLENRQIPILAS 179 (279)
T ss_dssp HHHHHHH---------HHHTTCC----EEECSGGGGGTEEEEES---CHHHHBSBEEEEEECHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHH---------HHhCCCC----EEEEecCcCCEEEeecc---CccccCcccccchhhHHHHHHHHhCCcEEEECC
Confidence 9999886 6788887 78999999999999986 778999999999999999999999999999999
Q ss_pred CccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccCCCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccc
Q 010333 259 LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDI 338 (513)
Q Consensus 259 vg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~ 338 (513)
++++++|+.||+|+|++|+++|.+|+||+|||+||++|++.++++|++++.+|+++++..+
T Consensus 180 v~~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~d~~~I~~i~~~e~~~l~~~~------------------- 240 (279)
T 3l86_A 180 LGYSKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLENGAVLEKITSHQVQEKIDTA------------------- 240 (279)
T ss_dssp EEECTTSCEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEETTEECCEEEGGGSHHHHHTT-------------------
T ss_pred cEECCCCCEeecCHHHHHHHHHHHcCCCEEEEEeCCCccccCCEehhhccHHHHHHHHhCC-------------------
Confidence 9999999999999999999999999999999999999998789999999999988886421
Q ss_pred cccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEE
Q 010333 339 TCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRV 418 (513)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~Rv 418 (513)
+.+| | |.+||+||..|++.||+|+
T Consensus 241 ----------------------------------~~tG-G---------------------M~~Kl~aa~~a~~~Gv~~v 264 (279)
T 3l86_A 241 ----------------------------------VITA-G---------------------MIPKIESAAKTVAAGVGQV 264 (279)
T ss_dssp ----------------------------------SSCT-T---------------------HHHHHHHHHHHHHTTCSEE
T ss_pred ----------------------------------CCcC-c---------------------HHHHHHHHHHHHHcCCCEE
Confidence 1145 5 9999999999999999999
Q ss_pred EEecCCCchhhHHHHHcCCCCeeEEecC
Q 010333 419 HLLDGTIGGVLLLELFKRDGMGTMVASD 446 (513)
Q Consensus 419 hIv~g~~~gaLL~ELft~dG~GT~I~~d 446 (513)
||+|+..+ ||+|..|
T Consensus 265 ~I~~~~~~-------------GT~i~~~ 279 (279)
T 3l86_A 265 LIGDNLLT-------------GTLITAD 279 (279)
T ss_dssp EEESSSSC-------------SEEEECC
T ss_pred EEeccCCC-------------CeEEecC
Confidence 99997532 8998754
No 12
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=100.00 E-value=4.1e-44 Score=357.64 Aligned_cols=249 Identities=24% Similarity=0.345 Sum_probs=210.8
Q ss_pred eEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCC---ccccCCc--cCCCHHHHHHH-HHH
Q 010333 101 TFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHE---AKYLGRY--RITDSESLAAA-MEA 174 (513)
Q Consensus 101 t~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~---~~~~~G~--RvTd~~~L~~a-~~a 174 (513)
++|||+||++++ .++.++++|+.|++.|+++||||||+||++..+++++++ ++|.+|+ |+|++++|+++ ++.
T Consensus 1 ~iViKlGGs~l~--~~~~~~~~i~~l~~~G~~vViVhGgg~~~~~~~~~~~~~~~~~~~~~g~~~rvt~~~~l~~~~~~~ 78 (269)
T 2egx_A 1 MIVVKVGGAEGI--NYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKTLEIFEMVY 78 (269)
T ss_dssp CEEEEECCSTTC--CHHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHHTTCCCCC-------CCCCCCHHHHHHHHHHH
T ss_pred CEEEEECHHHHH--HHHHHHHHHHHHHHCCCeEEEEECChHHHHHHHHHcCCccccccccCCccCcCCCHHHHHHHHHHH
Confidence 589999999998 799999999999999999999999999999999999998 7788999 99999999997 455
Q ss_pred HhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeecccc--------ccccCcccceEEEecHHHHHH
Q 010333 175 AGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVV--------DGVDYGATGEVKKVDVTRMRE 246 (513)
Q Consensus 175 ~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~Gvi--------dGvD~g~tG~Vr~Vd~~~I~~ 246 (513)
.|+++..+++. |+++|++ ++.+++.|++|++++|.|++ +++|++|+|+++++|.+.|+.
T Consensus 79 ~G~i~~~l~~~---------l~~~G~~----a~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~~ 145 (269)
T 2egx_A 79 CGLVNKRLVEL---------LQKEGAN----AIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDL 145 (269)
T ss_dssp HTHHHHHHHHH---------HHHTTCC----EEEEETTGGGCEEECBC----------------CCEECCCEECHHHHHH
T ss_pred HhHHHHHHHHH---------HHHCCCC----eEEeCCCCccceeeeecccccccccccccCCcCCCCCCceEECHHHHHH
Confidence 89999888876 6788887 67999999999999998865 678999999999999999999
Q ss_pred HhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccCC----CCccccccCHHHHH--HHHHHhh
Q 010333 247 RLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEAD--SLIRQRV 320 (513)
Q Consensus 247 LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld~----~g~lI~~Lt~~Ea~--~ll~~~~ 320 (513)
+|++|.|||++|++++++|+++|+|+|++|+.+|.+|+||+|+|+|||+|++. ++++|++++.+|++ ++ . .
T Consensus 146 ll~~g~ipVi~~v~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~dp~~~a~~i~~i~~~e~~~~~l--~-~ 222 (269)
T 2egx_A 146 LLQAGYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLARYPDEASLVREIPVERIEDPEY--L-A 222 (269)
T ss_dssp HHHTTCEEEEECCEEETTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSCBC------CBCCEECHHHHHCHHH--H-T
T ss_pred HHHCCCEEEEcCcEECCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCchhhhcCCCCCccccccCCHHHhhHHHh--c-C
Confidence 99999999999999999999999999999999999999999999999999843 58999999999887 66 1 0
Q ss_pred hhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCc
Q 010333 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (513)
Q Consensus 321 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m 400 (513)
+++| | |
T Consensus 223 ----------------------------------------------------~~~g-g---------------------m 228 (269)
T 2egx_A 223 ----------------------------------------------------LAQG-R---------------------M 228 (269)
T ss_dssp ----------------------------------------------------TSCH-H---------------------H
T ss_pred ----------------------------------------------------CCCC-c---------------------h
Confidence 1134 4 9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 401 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 401 ~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
.+|++||..|+++|++++||+|++.++.|+.++ +|.||+|.
T Consensus 229 ~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l---~g~GT~i~ 269 (269)
T 2egx_A 229 KRKVMGAVEAVKGGVKRVVFADGRVENPIRRAL---SGEGTVVR 269 (269)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHH---TTCSEEEC
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHh---CCCCeEEC
Confidence 999999999999999779999999999987776 45999984
No 13
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=100.00 E-value=6.5e-42 Score=339.12 Aligned_cols=253 Identities=22% Similarity=0.297 Sum_probs=225.7
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHH-HHHH
Q 010333 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGI-RFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAA 175 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGi-rvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a-~~a~ 175 (513)
++++||||||+++++++ +++++++|+.++..|. ++|||||+|++++.+++++|++++++.|+|+|+.+.++++ +..+
T Consensus 2 m~~~ViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~~~~~glr~t~~~~l~~~~~~l~ 81 (258)
T 1gs5_A 2 MNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALA 81 (258)
T ss_dssp CCCEEEEECGGGGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCEETTEECBCHHHHHHHHHHHH
T ss_pred CccEEEEEChhHhCChHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCcceeCCEeeCCHHHHHHHHHHHh
Confidence 36799999999999876 8999999998877655 5999999999999999999999999999999999999987 5678
Q ss_pred hHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEE
Q 010333 176 GGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVI 255 (513)
Q Consensus 176 G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPV 255 (513)
|.+|..+++. |+++|++ ++++++.+++|++++|.+ .|++++|+++.++.+.|+.+|++|.|||
T Consensus 82 ~~~n~~l~~~---------l~~~G~~----a~~l~~~~~~~~~~~~~~----~d~~~~g~~~~~~~~~i~~ll~~g~ipV 144 (258)
T 1gs5_A 82 GTANKTLLAW---------AKKHQIA----AVGLFLGDGDSVKVTQLD----EELGHVGLAQPGSPKLINSLLENGYLPV 144 (258)
T ss_dssp THHHHHHHHH---------HHHTTCC----EEEECTTGGGCEEEEECC----GGGBSBEEEEECCCHHHHHHHHTTCEEE
T ss_pred ccchHHHHHH---------HHHCCCC----eEEEeecCCCEEEEEEcC----CCCCCcCceeEECHHHHHHHHHCCCEEE
Confidence 8999888875 6788987 799999999999999864 5889999999999999999999999999
Q ss_pred EcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeeccccc-CCCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhh
Q 010333 256 LSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVA 334 (513)
Q Consensus 256 Ispvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gl-d~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~ 334 (513)
++|++++++|+++|+|+|.+|+.+|.+|+|| |+|+|||+|+ +.++++|++++.+|+++++..+.
T Consensus 145 i~~~g~~~~g~~~~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d~~~i~~i~~~e~~~l~~~~~-------------- 209 (258)
T 1gs5_A 145 VSSIGVTDEGQLMNVNADQAATALAATLGAD-LILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGI-------------- 209 (258)
T ss_dssp ECSEEECTTSCEEECCHHHHHHHHHHHHTCE-EEEEESSSSCBCTTSCBCCEECHHHHHHHHHTTC--------------
T ss_pred EeCCcCCCCCcEEEecHHHHHHHHHHHhCCc-EEEEeCCCceECCCCCCCcccCHHHHHHHHhcCC--------------
Confidence 9999999999999999999999999999999 9999999998 46799999999999988863211
Q ss_pred cccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcC
Q 010333 335 EEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRG 414 (513)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~G 414 (513)
.+| | |.+|+.+|..+|+.+
T Consensus 210 ---------------------------------------~~g-G---------------------m~~k~~~a~~~~~~~ 228 (258)
T 1gs5_A 210 ---------------------------------------ITD-G---------------------MIVKVNAALDAARTL 228 (258)
T ss_dssp ---------------------------------------SCT-H---------------------HHHHHHHHHHHHHHH
T ss_pred ---------------------------------------CCC-c---------------------HHHHHHHHHHHHHhC
Confidence 134 4 999999999999875
Q ss_pred CCEEEEecCCCchhhHHHHHcCCCCeeEEec
Q 010333 415 VQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (513)
Q Consensus 415 V~RvhIv~g~~~gaLL~ELft~dG~GT~I~~ 445 (513)
+.++||+|++.++. |.++|++++.||+|.+
T Consensus 229 ~~~v~I~~~~~~~~-l~~~~~~~~~GT~i~~ 258 (258)
T 1gs5_A 229 GRPVDIASWRHAEQ-LPALFNGMPMGTRILA 258 (258)
T ss_dssp TSCEEEEESSCGGG-HHHHHTTCCSSEEECC
T ss_pred CCEEEEecCCCchH-HHHHhcCCCCcEEEeC
Confidence 55799999999987 7899999999999963
No 14
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=5.4e-41 Score=335.81 Aligned_cols=235 Identities=11% Similarity=0.158 Sum_probs=189.1
Q ss_pred CCeEEEEeCCccCCCCC----------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCcccc---------CC
Q 010333 99 GGTFVVIISGEIVSSPY----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYL---------GR 159 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~----------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~---------~G 159 (513)
||+||||+||+++++++ +.+++++|+.|+ ++++|||||||||++.+++++|++++|+ .|
T Consensus 2 ~k~iVIKlGG~~l~~~~~~~~~~~~~~l~~l~~~i~~l~--~~~~vlVhGGG~~~~~~~~~~gi~~~~~~~~g~~~~~~G 79 (269)
T 3ll9_A 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNAS--PSSLMIVHGAGSFGHPFAGEYRIGSEIENEEDLRRRRFG 79 (269)
T ss_dssp -CCEEEEECHHHHEECCSSSCEECHHHHHHHHHHHHHHC--CSSEEEEECCGGGTHHHHHHHTTTSCCCSHHHHHHHHHH
T ss_pred CCEEEEEEChhheecCccccccccHHHHHHHHHHHHHhc--CCCEEEEECCcHHHHHHHHHcCCCcccccCcccccccch
Confidence 79999999999998875 477999999875 6899999999999999999999999887 55
Q ss_pred ccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEe
Q 010333 160 YRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKV 239 (513)
Q Consensus 160 ~RvTd~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~V 239 (513)
+|+|+. +++++|..++++ |+++|++ ++++++.+..+++ +|+++++
T Consensus 80 ~rvT~~--------~~~~ln~~l~~~---------L~~~G~~----a~~l~g~~~~~~~--------------~g~v~~v 124 (269)
T 3ll9_A 80 FALTQN--------WVKKLNSHVCDA---------LLAEGIP----AVSMQPSAFIRAH--------------AGRISHA 124 (269)
T ss_dssp HHHHHH--------HHHHHHHHHHHH---------HHHTTCC----EEECCGGGTEEEE--------------TTEEEEE
T ss_pred hhHHHH--------HHHHHHHHHHHH---------HHHCCCc----EEEEcchHcCeEe--------------cCeeeee
Confidence 666554 345888877765 6788987 6888887765543 5889999
Q ss_pred cHHHHHHHhcCCceEEEcC-CccCCC--CceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCH
Q 010333 240 DVTRMRERLDGGCLVILSN-LGYSSS--GEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL 309 (513)
Q Consensus 240 d~~~I~~LLd~G~IPVIsp-vg~s~t--Gei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~ 309 (513)
|.+.|+++|++|.|||++| ++++++ |+++|+|+|++|+.+|.+|+||+|+|+|||+|++ +++++|++++.
T Consensus 125 ~~~~i~~lL~~g~ipVi~~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~ 204 (269)
T 3ll9_A 125 DISLIRSYLEEGMVPVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGS 204 (269)
T ss_dssp CCHHHHHHHHTTCEEEEECEEEEBSCTTTSEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC
T ss_pred cHHHHHHHHHCCCEEEECCCEEecccccCcceecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCH
Confidence 9999999999999999999 788888 9999999999999999999999999999999973 34678999999
Q ss_pred HHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCcccccccccc
Q 010333 310 QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIG 389 (513)
Q Consensus 310 ~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g 389 (513)
.|+++++... ++.+.+| |
T Consensus 205 ~e~~~~l~~~--------------------------------------------------~~~~~tg-G----------- 222 (269)
T 3ll9_A 205 LDDLESLDGT--------------------------------------------------LNTDVTG-G----------- 222 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhccc--------------------------------------------------CCCcCcC-C-----------
Confidence 8887665321 0112245 5
Q ss_pred ccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCC-eeEEe
Q 010333 390 GQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGM-GTMVA 444 (513)
Q Consensus 390 ~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~-GT~I~ 444 (513)
|.+||++|..||++|+ ++||+|++.++.|+ |+|+++++ ||+|.
T Consensus 223 ----------M~~Kl~aa~~a~~~Gv-~v~I~~g~~~~~l~-~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 223 ----------MVGKIRELLLLAEKGV-ESEIINAAVPGNIE-RALLGEEVRGTRIT 266 (269)
T ss_dssp -----------SHHHHHHHHHHHTTC-CEEEEESSSTTHHH-HHHHTCCCSSEEC-
T ss_pred ----------cHHHHHHHHHHHhCCC-eEEEEeCCCchHHH-HHHCCCCCCcEEEE
Confidence 8999999999999999 69999999999865 99999999 99996
No 15
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=100.00 E-value=1.1e-39 Score=333.15 Aligned_cols=258 Identities=19% Similarity=0.159 Sum_probs=216.0
Q ss_pred cCCeEEEEeCCccCC--CC---------ChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHH
Q 010333 98 RGGTFVVIISGEIVS--SP---------YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSE 166 (513)
Q Consensus 98 rgkt~VIKlGGs~l~--~~---------~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~ 166 (513)
++|++|||+||++++ ++ .+..++++|+.|+..|+++|||||||+|++.++++++++++| |++.
T Consensus 3 ~~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~~~~~------t~~~ 76 (316)
T 2e9y_A 3 SGRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEALPPE------RPRQ 76 (316)
T ss_dssp -CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHTSCTT------SCCC
T ss_pred CCCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCCCCCC------CCHH
Confidence 578999999999999 53 267899999999999999999999999999999999988765 7888
Q ss_pred HHHHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCc----ceeeEeeecCCceeeee-ecccc-c-------cccCcc
Q 010333 167 SLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSR----WHEVGVSVASGNFLAAK-RKGVV-D-------GVDYGA 232 (513)
Q Consensus 167 ~L~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~----~~av~l~~~dGnfvtA~-p~Gvi-d-------GvD~g~ 232 (513)
+|+.+ +.++|+++++|++.|+ ..|.++|++.+ +.++.+++.|++|++++ |.|.+ + +.|++|
T Consensus 77 ~l~~~~~~~~G~i~~~l~~~l~-----~~l~~~g~~a~~~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~ 151 (316)
T 2e9y_A 77 PLYIATAMTQAWIGLLLKHSLE-----EELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGW 151 (316)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-----HHHHHTTCCCCCCEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhHHHHHHHHHHH-----HHHHhcCCCccccceeeEEEeccccccccccccccccccchhhhhhhhhhcce
Confidence 88886 5689999988988886 57889998754 44579999999999875 55543 2 134666
Q ss_pred c--ce--------------EEEecHHHHHHHhcCCceEEEc-----CCccCCCC----ceeecChHHHHHHHHHHcCCCE
Q 010333 233 T--GE--------------VKKVDVTRMRERLDGGCLVILS-----NLGYSSSG----EVLNCNTYEVATACALAIEADK 287 (513)
Q Consensus 233 t--G~--------------Vr~Vd~~~I~~LLd~G~IPVIs-----pvg~s~tG----ei~nld~D~vAa~lA~aL~ADk 287 (513)
+ |. ++.++.+.|+++|++|.|||++ |++++++| +.+|+|+|++|+++|.+|+||+
T Consensus 152 ~~~~~~g~g~r~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~~~~~g~~~g~~~~id~D~~Aa~lA~~l~Ad~ 231 (316)
T 2e9y_A 152 VFKRDPRGGFRRVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADL 231 (316)
T ss_dssp EEEECTTSSEEEEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEEECTTSCEEECSCCCCHHHHHHHHHHHTTCSE
T ss_pred eeeccccccceecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCeeECCCCCeecceeeeCHHHHHHHHHHHcCCCE
Confidence 4 44 7778999999999999999998 88888888 6678899999999999999999
Q ss_pred EEEeecccccC-----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCccccc
Q 010333 288 LICIIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSER 362 (513)
Q Consensus 288 LIfLTDv~gld-----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (513)
|||+|||+|++ +++++|++++.+|+++++..+.
T Consensus 232 LiilTdVdGVy~dp~~p~a~~i~~i~~~e~~~~~~~g~------------------------------------------ 269 (316)
T 2e9y_A 232 LVILTDVPGVAVNYGREGERWLRRAAASELKKYLREGH------------------------------------------ 269 (316)
T ss_dssp EEEEESSSSCEETTTSTTCEECSEEEHHHHHHHHHTTC------------------------------------------
T ss_pred EEEEeCchHhhCCCCCCCCcCCcEEcHHHHHHHHhcCC------------------------------------------
Confidence 99999999973 3689999999999988863211
Q ss_pred ccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeE
Q 010333 363 RIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTM 442 (513)
Q Consensus 363 ~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~ 442 (513)
+++| | |.+|++||..|+++|++++||++. +. |.++|++ +.||+
T Consensus 270 ----------~~~G-g---------------------M~~Kv~aa~~a~~~gv~~v~I~~~---~~-l~~~l~g-~~GT~ 312 (316)
T 2e9y_A 270 ----------FPPG-S---------------------MGPKVEAAISFVERTGKPAVIGSL---EE-ARQVLSL-QAGTV 312 (316)
T ss_dssp ----------SCTT-T---------------------HHHHHHHHHHHHHHHCSCEEEEES---TT-HHHHHTT-SSSEE
T ss_pred ----------CCCC-C---------------------HHHHHHHHHHHHHcCCCeEEECcH---HH-HHHHHcC-CCCeE
Confidence 2245 5 999999999999999988999982 33 7889986 89999
Q ss_pred Eec
Q 010333 443 VAS 445 (513)
Q Consensus 443 I~~ 445 (513)
|.+
T Consensus 313 i~~ 315 (316)
T 2e9y_A 313 VML 315 (316)
T ss_dssp EEC
T ss_pred Eec
Confidence 975
No 16
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=100.00 E-value=1.5e-39 Score=325.15 Aligned_cols=240 Identities=12% Similarity=0.102 Sum_probs=198.9
Q ss_pred hhcCCe-EEEEeCCccCCCCC---------hHHHHHHHHHHHhCC------CeEEEEeCChHHHHHHHHHcCCCcc----
Q 010333 96 AHRGGT-FVVIISGEIVSSPY---------LDPILKDIAFLHHLG------IRFVLVPGTHVQIDKLLSERGHEAK---- 155 (513)
Q Consensus 96 ~~rgkt-~VIKlGGs~l~~~~---------l~~l~~dIA~L~~lG------irvVLVHGggpqI~~~L~~~Gi~~~---- 155 (513)
.|||.+ +|||+||+++++++ ++++++||+.|+..| +++|||||||++++.+++++|++++
T Consensus 2 ~~~~~m~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~i~~l~~~G~~~~~~~~vVlVhGGG~~~~~~~~~lgi~~~~~~~ 81 (266)
T 3k4o_A 2 SHGGSMLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKI 81 (266)
T ss_dssp -----CEEEEEECTTSSCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHGGGEEECSSSEE
T ss_pred CCCCceEEEEEEchHHeeCCCccCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEeCchHHHHHHHHHcCCCcccCcc
Confidence 488876 99999999999863 789999999999888 9999999999999999999999988
Q ss_pred cc---CCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcc
Q 010333 156 YL---GRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGA 232 (513)
Q Consensus 156 ~~---~G~RvTd~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~ 232 (513)
|+ .|+|+|+.++ +++|..++++ |+++|++ ++++++.|.++++
T Consensus 82 ~~~~~~G~r~T~~a~--------~~ln~~l~~~---------l~~~G~~----a~~l~~~d~~~~~-------------- 126 (266)
T 3k4o_A 82 FINMEKGFWEIQRAM--------RRFNNIIIDT---------LQSYDIP----AVSIQPSSFVVFG-------------- 126 (266)
T ss_dssp ECCHHHHHHHHHHHH--------HHHHHHHHHH---------HHTTTCC----EEEECGGGTCEES--------------
T ss_pred cccccCceeHHHHHH--------HHHHHHHHHH---------HHHCCCc----EEEeeHHHcCccc--------------
Confidence 76 6777776543 4678777765 6778887 6777776655443
Q ss_pred cceEEEecHHHHHHHhcCCceEEEcC-CccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccCCCCccccccCHHH
Q 010333 233 TGEVKKVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQE 311 (513)
Q Consensus 233 tG~Vr~Vd~~~I~~LLd~G~IPVIsp-vg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld~~g~lI~~Lt~~E 311 (513)
.| +++|.+.|+.+|++|.|||++| ++++++|+++|+|+|++|+++|.+|+||+|||+||++|++.|++++++++..|
T Consensus 127 ~g--~~v~~~~i~~lL~~g~ipVi~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~d~~~i~~~~~~e 204 (266)
T 3k4o_A 127 DK--LIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNN 204 (266)
T ss_dssp SS--CBCCCHHHHHHHHTTCEEEEECEEEEESSSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSSBSSSSBCSEECTTT
T ss_pred Cc--eEecHHHHHHHHHCCCEEEEeCCEEEcCCCCeeeeCHHHHHHHHHHHcCCCEEEEEecCCeEEeCCeecCcCCHHH
Confidence 12 5688999999999999999998 88898999999999999999999999999999999999888899999999888
Q ss_pred HHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCcccccccccccc
Q 010333 312 ADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQ 391 (513)
Q Consensus 312 a~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~ 391 (513)
++++++.-. +.++.+.+| |
T Consensus 205 ~~~l~~~~~-----------------------------------------------~~~~~~~tG-G------------- 223 (266)
T 3k4o_A 205 IYKILNYLS-----------------------------------------------GSNSIDVTG-G------------- 223 (266)
T ss_dssp HHHHHHHHH-----------------------------------------------STTCSCCSS-H-------------
T ss_pred HHHHHHHhc-----------------------------------------------cccCCcccC-C-------------
Confidence 888764210 012334455 5
Q ss_pred chhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecC
Q 010333 392 ERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (513)
Q Consensus 392 ~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d 446 (513)
|.+||++|..||+ ++||+|++.++. |.++|+++++||+|.+.
T Consensus 224 --------M~~Kv~aa~~a~~----~v~I~~g~~~~~-l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 224 --------MKYKIEMIRKNKC----RGFVFNGNKANN-IYKALLGEVEGTEIDFS 265 (266)
T ss_dssp --------HHHHHHHHHHTTC----EEEEEETTSTTH-HHHHHTTCCCSEEEECC
T ss_pred --------HHHHHHHHHHHhc----CEEEEeCCCccH-HHHHhCCCCCceEEEeC
Confidence 9999999999998 899999999998 78999999999999874
No 17
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=100.00 E-value=3.9e-39 Score=328.09 Aligned_cols=258 Identities=17% Similarity=0.182 Sum_probs=213.6
Q ss_pred CCeEEEEeCCccCCC---------CChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHH
Q 010333 99 GGTFVVIISGEIVSS---------PYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLA 169 (513)
Q Consensus 99 gkt~VIKlGGs~l~~---------~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~ 169 (513)
+|++|||+||+++++ +.++.++++|+.|++.|+++|||||||||++.++++++++++| +|++++|+
T Consensus 2 ~k~iVIKlGGs~l~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~~~~~~~~-----~~~~~~l~ 76 (310)
T 2we5_A 2 GKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSE-----KNPAMPLD 76 (310)
T ss_dssp CCEEEEECCGGGGCCSSCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTCSS-----SSCCCCHH
T ss_pred CcEEEEEEChHHhcCCCCChHHHHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhHHHHHcCCCCCC-----CCCHHHHH
Confidence 579999999999986 2368899999999999999999999999999999999987765 57888899
Q ss_pred HH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCccee----eEeeecCCceee-eeecccc-cccc------C------
Q 010333 170 AA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHE----VGVSVASGNFLA-AKRKGVV-DGVD------Y------ 230 (513)
Q Consensus 170 ~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~a----v~l~~~dGnfvt-A~p~Gvi-dGvD------~------ 230 (513)
++ ++++|++++.++.+|+ ..|...|++.++.. .+++..|++|-. ++|.|++ .+.| +
T Consensus 77 ~~~a~~~G~l~~~i~~al~-----~~l~~~g~~~~v~~~l~~~~v~~~d~~f~~~~~~vg~~~t~~da~~l~~~~~~~~~ 151 (310)
T 2we5_A 77 TCVAMTQGSIGYWLSNALN-----QELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEAMQAGAIFKE 151 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHTTCCCCEEEBCCEEEECTTCHHHHSCCEEEEEEECHHHHHHHHTTTCCEEE
T ss_pred HHHHHhhhHHHHHHHHHHH-----HHHHhcCCchhhHhhhhhhcccccchhhcccCceeEEeccHHHHHHHHhccccccc
Confidence 87 6899999999987765 46788898876654 677888887642 4566653 3333 2
Q ss_pred ----ccc---c---eEEEecHHHHHHHhcCCceEEEc-----CC-ccCCCCceeecChHHHHHHHHHHcCCCEEEEeecc
Q 010333 231 ----GAT---G---EVKKVDVTRMRERLDGGCLVILS-----NL-GYSSSGEVLNCNTYEVATACALAIEADKLICIIDG 294 (513)
Q Consensus 231 ----g~t---G---~Vr~Vd~~~I~~LLd~G~IPVIs-----pv-g~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv 294 (513)
+|. | ++++++.+.|+++|++|+|||++ |+ +.+..|+++|+|+|++|+++|.+|+||+|+|+|||
T Consensus 152 ~~~~~~~~vv~sp~~i~~v~~~~i~~lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdV 231 (310)
T 2we5_A 152 DAGRGWRKVVPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGV 231 (310)
T ss_dssp CTTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEETTTTEECCCCCCHHHHHHHHHHHTTCSEEEEECSC
T ss_pred cCCcceeeccCCcccceeehHHHHHHHHHCCCEEEEECCCCCCCcCCCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeCc
Confidence 221 3 56779999999999999999999 77 66778999999999999999999999999999999
Q ss_pred cccC-----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccC
Q 010333 295 PILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNN 369 (513)
Q Consensus 295 ~gld-----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (513)
+|++ +++++|++++.+|+++++..+.
T Consensus 232 dGVy~dp~~~~a~~i~~i~~~e~~~~~~~g~------------------------------------------------- 262 (310)
T 2we5_A 232 DYVCINYGKPDEKQLTNVTVAELEEYKQAGH------------------------------------------------- 262 (310)
T ss_dssp SSCEESTTSTTCEECCEEEHHHHHHHHHTTC-------------------------------------------------
T ss_pred hHhhCCCCCCCCeECCEEcHHHHHHHhhCCC-------------------------------------------------
Confidence 9973 3689999999999888863211
Q ss_pred CCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCC-EEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 370 GVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQ-RVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 370 ~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~-RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
+++| | |.+|++||..|++.|++ ++||++ .+. |.++|++++.||+|.
T Consensus 263 ---~~~G-g---------------------M~~Kv~aa~~a~~~gv~~~v~I~~---~~~-l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 263 ---FAPG-S---------------------MLPKIEAAIQFVESQPNKQAIITS---LEN-LGSMSGDEIVGTVVT 309 (310)
T ss_dssp ---SCTT-T---------------------THHHHHHHHHHHHHSTTCEEEEEC---SGG-GGGCBTTBCCSEEEE
T ss_pred ---CCCC-C---------------------hHHHHHHHHHHHHcCCCceEEECc---HHH-HHHHHcCCCCCeEEe
Confidence 2245 5 99999999999999994 899997 233 678999999999996
No 18
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=100.00 E-value=6.1e-38 Score=320.20 Aligned_cols=259 Identities=18% Similarity=0.203 Sum_probs=213.3
Q ss_pred CCeEEEEeCCccCC--CC---------ChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHH
Q 010333 99 GGTFVVIISGEIVS--SP---------YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSES 167 (513)
Q Consensus 99 gkt~VIKlGGs~l~--~~---------~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~ 167 (513)
+|++|||+||++++ ++ .++++++||+.|++.|+++||||||+||++..+.+++++++| + +|++++
T Consensus 2 ~k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~~~-~---~~~~~~ 77 (314)
T 1e19_A 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQAT-Y---GIPAQP 77 (314)
T ss_dssp CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHH-H---CCCCCC
T ss_pred CCEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCcccc-C---CCChhH
Confidence 68999999999999 53 267899999999999999999999999999999999888776 3 678888
Q ss_pred HHHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCc----ceeeEeeecCCceeeee-eccc-ccc-------ccCccc
Q 010333 168 LAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSR----WHEVGVSVASGNFLAAK-RKGV-VDG-------VDYGAT 233 (513)
Q Consensus 168 L~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~----~~av~l~~~dGnfvtA~-p~Gv-idG-------vD~g~t 233 (513)
|+++ ++.+|+++++|+++|+ ..|.++|++.+ +.++.+++.|++|..+. |.|. +.+ .|++|+
T Consensus 78 l~~~~a~~~G~i~~~l~~~l~-----~~l~~~gi~a~~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~ 152 (314)
T 1e19_A 78 MDVAGAMSQGWIGYMIQQALK-----NELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWI 152 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCE
T ss_pred HHHHHHHHhhHHHHHHHHHHH-----HHHHHcCCchhhhhhheeeeecccchhhccccccccceecHHHhhhhhhhcCcc
Confidence 8887 5678999999998886 57899998752 34578899999888764 4342 211 135443
Q ss_pred --ce--------------EEEecHHHHHHHhcCCceEEEc-----CCccCCC---CceeecChHHHHHHHHHHcCCCEEE
Q 010333 234 --GE--------------VKKVDVTRMRERLDGGCLVILS-----NLGYSSS---GEVLNCNTYEVATACALAIEADKLI 289 (513)
Q Consensus 234 --G~--------------Vr~Vd~~~I~~LLd~G~IPVIs-----pvg~s~t---Gei~nld~D~vAa~lA~aL~ADkLI 289 (513)
|. ++.++.+.|+++|++|+|||++ |++.+.+ |..+|+|+|++|+++|.+|+||+|+
T Consensus 153 ~~g~~~~~~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li 232 (314)
T 1e19_A 153 VKEDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFM 232 (314)
T ss_dssp EEECTTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEE
T ss_pred ccccccccccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeEECCCCcceeEEeccHHHHHHHHHHHcCCCEEE
Confidence 32 7789999999999999999998 8887776 5668999999999999999999999
Q ss_pred EeecccccC-----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCccccccc
Q 010333 290 CIIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRI 364 (513)
Q Consensus 290 fLTDv~gld-----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (513)
|+|||+|++ +++++|++++.+|+++++..+.
T Consensus 233 ~lTdVdGvy~~~p~~~a~~i~~i~~~e~~~~~~~g~-------------------------------------------- 268 (314)
T 1e19_A 233 ILTDVNGAALYYGTEKEQWLREVKVEELRKYYEEGH-------------------------------------------- 268 (314)
T ss_dssp EEESSSSCEETTTSTTCEECCEEEHHHHHHHHHTTC--------------------------------------------
T ss_pred EeccCCEEECCCCCCCCeECCEECHHHHHHHHhCCC--------------------------------------------
Confidence 999999973 3689999999999988864211
Q ss_pred ccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 365 ATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 365 ~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
+++| | |.+||++|..+|+.|+.++||+++ + .|.|+|++ +.||+|.
T Consensus 269 --------~~~G-g---------------------M~~Kv~aa~~~~~~~~~~v~I~~~---~-~l~~~~~g-~~GT~i~ 313 (314)
T 1e19_A 269 --------FKAG-S---------------------MGPKVLAAIRFIEWGGERAIIAHL---E-KAVEALEG-KTGTQVL 313 (314)
T ss_dssp --------SCTT-T---------------------HHHHHHHHHHHHHHTCSEEEEEEG---G-GHHHHHTT-SSSEEEE
T ss_pred --------cCCC-C---------------------hHHHHHHHHHHHHhCCCeEEEecH---H-HHHHHHcC-CCCeEEc
Confidence 2245 5 999999999999999889999984 2 37899986 7999996
Q ss_pred c
Q 010333 445 S 445 (513)
Q Consensus 445 ~ 445 (513)
+
T Consensus 314 ~ 314 (314)
T 1e19_A 314 P 314 (314)
T ss_dssp C
T ss_pred C
Confidence 4
No 19
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=100.00 E-value=3.1e-37 Score=311.10 Aligned_cols=246 Identities=14% Similarity=0.165 Sum_probs=188.3
Q ss_pred hHHHhhcCCeEEEEeCCccCCCCC---------hHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHcCCCccccCCcc
Q 010333 92 PYLWAHRGGTFVVIISGEIVSSPY---------LDPILKDIAFLHHLGI-RFVLVPGTHVQIDKLLSERGHEAKYLGRYR 161 (513)
Q Consensus 92 pYi~~~rgkt~VIKlGGs~l~~~~---------l~~l~~dIA~L~~lGi-rvVLVHGggpqI~~~L~~~Gi~~~~~~G~R 161 (513)
.||++|++ ++||||||+++++++ +..++++|+.|++.|+ ++||||||++|++..++++++++++.
T Consensus 17 ~~~~~~~~-~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l~~~~~~~~~~---- 91 (286)
T 3d40_A 17 RGSHMTPD-FLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHDSTHAFS---- 91 (286)
T ss_dssp CSTTSCCS-EEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC------------CCT----
T ss_pred hhhccCCC-EEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHcCCCcccc----
Confidence 58999875 999999999999863 7899999999999998 79999999999999999888775432
Q ss_pred CCCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecH
Q 010333 162 ITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV 241 (513)
Q Consensus 162 vTd~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~ 241 (513)
.. .+....|.++..+++. |.++|++ ++++.+.+++| + + | | ++.++.
T Consensus 92 ---~~---~~~vt~g~l~~~l~~~---------l~~~G~~----a~~l~~~~~~~-t-~--------d----g-~~~~~~ 137 (286)
T 3d40_A 92 ---LA---GLTEATFEVKKRWAEK---------LRGIGVD----AFPLQLAAMCT-L-R--------N----G-IPQLRS 137 (286)
T ss_dssp ---TH---HHHHHHHHHHHHHHHH---------HHHTTCC----EEECCGGGTEE-E-E--------T----T-EEEECC
T ss_pred ---hh---cchhhHHHHHHHHHHH---------HHHcCCc----EEEEEeecCCc-c-c--------C----C-eEEehH
Confidence 11 1122336677666665 6788887 67888888876 2 1 2 4 688899
Q ss_pred HHHHHHhcCCceEEEcC-CccCCCCceeecChHHHHHHHHHH-cCCCEEEEeecccccC-CC---CccccccCHHHHHHH
Q 010333 242 TRMRERLDGGCLVILSN-LGYSSSGEVLNCNTYEVATACALA-IEADKLICIIDGPILD-ES---GHLIRFLTLQEADSL 315 (513)
Q Consensus 242 ~~I~~LLd~G~IPVIsp-vg~s~tGei~nld~D~vAa~lA~a-L~ADkLIfLTDv~gld-~~---g~lI~~Lt~~Ea~~l 315 (513)
+.|+++|++|.|||+++ ++++++|+++|+|+|++|+.+|.+ |+||+|+|+|||+|++ .+ +++|++++..|++++
T Consensus 138 ~~i~~lL~~g~IpVi~gd~~~~~~g~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~~a~~i~~is~~e~~~l 217 (286)
T 3d40_A 138 EVLRDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAGGDTILPEVDARSPEQA 217 (286)
T ss_dssp SHHHHHHHTTCEEEEECEEEEBTTSCEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC---CEECCEEETTSCHHH
T ss_pred HHHHHHHHCcCEEEEcCCeEEcCCCCEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCCCCcCCcccCHHHHHHH
Confidence 99999999999999998 888899999999999999999999 9999999999999983 33 899999999887777
Q ss_pred HHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhc
Q 010333 316 IRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLS 395 (513)
Q Consensus 316 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~ 395 (513)
++.-. +.++.+.+| |
T Consensus 218 ~~~~~-----------------------------------------------~~~~~~~tg-g----------------- 232 (286)
T 3d40_A 218 YAALW-----------------------------------------------GSSEWDATG-A----------------- 232 (286)
T ss_dssp HHHHH-----------------------------------------------HSCC----C-H-----------------
T ss_pred HHhhc-----------------------------------------------cccCCcccC-c-----------------
Confidence 53210 011223455 4
Q ss_pred cccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcC-----CCC-eeEEecCC
Q 010333 396 RLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKR-----DGM-GTMVASDL 447 (513)
Q Consensus 396 ~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~-----dG~-GT~I~~d~ 447 (513)
|.+|++||..|+++|++ ++|+|++.++.| .++|+. ..+ ||.|..+.
T Consensus 233 ----M~~Kl~Aa~~a~~~gv~-v~I~~g~~p~~l-~~l~t~~~~~~~~~~~t~i~~~~ 284 (286)
T 3d40_A 233 ----MHTKLDALVTCARRGAE-CFIMRGDPGSDL-EFLTAPFSSWPAHVRSTRITTTA 284 (286)
T ss_dssp ----HHHHHHHHHHHHHTTCE-EEEEECCTTCCC-GGGGSCGGGSCTTCCCEEEEC--
T ss_pred ----HHHHHHHHHHHHHCCCc-EEEEeCCCCCcH-HHHhcCcccCcccccceeeeecc
Confidence 99999999999999997 999999999986 899998 676 99998753
No 20
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=100.00 E-value=7.6e-35 Score=288.13 Aligned_cols=226 Identities=13% Similarity=0.107 Sum_probs=175.9
Q ss_pred CCeEEEEeCCccCCCCC---------hHHHHHHHHHHHhCCCeEE-EEeCChHHHHHHHHHcCCCccccCCccCCCHHHH
Q 010333 99 GGTFVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFV-LVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~---------l~~l~~dIA~L~~lGirvV-LVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L 168 (513)
.|++|||+||+++++++ ++++++||+. |+++| ||||||++++.+++++|++++|++ ||...|
T Consensus 3 ~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~----G~~vv~lVhGGG~~~~~~~~~~gi~~~~~~----~d~~gl 74 (249)
T 3ll5_A 3 FTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSFGHIKAMEFGLPGPKNP----RSSIGY 74 (249)
T ss_dssp -CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT----CTTEEEEEECCGGGTHHHHHHHTCSEECCH----HHHHHH
T ss_pred ceEEEEEECccEEecCcccccchHHHHHHHHHHHhc----CCceEEEEECccHHHHHHHHHhCCCcCCCc----cccccH
Confidence 48999999999999862 5677777764 99999 999999999999999999998754 677788
Q ss_pred HHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHh
Q 010333 169 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL 248 (513)
Q Consensus 169 ~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LL 248 (513)
.++.++++.+|..++++ |.++|++ ++++++.| ++++|++ +.+.|+++|
T Consensus 75 ~~t~~~~~~ln~~~v~~---------l~~~G~~----a~~l~~~~----------------~~~~g~v---~~~~i~~ll 122 (249)
T 3ll5_A 75 SIVHRDMENLDLMVIDA---------MIEMGMR----PISVPISA----------------LRYDGRF---DYTPLIRYI 122 (249)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHTTCC----EEECCGGG----------------SCBSSSB---CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHCCCc----EEEEcHHH----------------cccccEE---cHHHHHHHH
Confidence 87755677888888754 6788887 56665544 4446776 899999999
Q ss_pred cCCceEEEcC-CccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-CC------CccccccCHHHHHHHHHHhh
Q 010333 249 DGGCLVILSN-LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ES------GHLIRFLTLQEADSLIRQRV 320 (513)
Q Consensus 249 d~G~IPVIsp-vg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-~~------g~lI~~Lt~~Ea~~ll~~~~ 320 (513)
++|.|||++| .+.+.+|+++|+|+|++|+.+|.+|+||+|+|+||++|++ .+ .+++++++ ++++...
T Consensus 123 ~~g~ipVi~~~~~~~~~~~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~~~~---- 197 (249)
T 3ll5_A 123 DAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNITFDR---- 197 (249)
T ss_dssp HTTCEEEEECEEEEEETTEEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC--------
T ss_pred HCCCEEEECCCEEEcCCCceeeecHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHhccc----
Confidence 9999999998 4445578899999999999999999999999999999973 23 45677773 1111110
Q ss_pred hhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCc
Q 010333 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (513)
Q Consensus 321 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m 400 (513)
.+.+.+| | |
T Consensus 198 -------------------------------------------------~~~~~tG-g---------------------M 206 (249)
T 3ll5_A 198 -------------------------------------------------VQNDVTG-G---------------------I 206 (249)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------CCCeeEC-C---------------------H
Confidence 1112245 5 9
Q ss_pred HHHHHHHHHH-HHcCCCEEEEecCCCchhhHHHHHcCCCC-eeEE
Q 010333 401 LSELAAAAFV-CRRGVQRVHLLDGTIGGVLLLELFKRDGM-GTMV 443 (513)
Q Consensus 401 ~~KL~AA~~A-~~~GV~RvhIv~g~~~gaLL~ELft~dG~-GT~I 443 (513)
.+||++|..| +++|+ ++||+|++.++.|+. + .++++ ||+|
T Consensus 207 ~~Kl~aA~~a~~~~Gv-~v~I~~g~~~~~l~~-l-~g~~~~GT~i 248 (249)
T 3ll5_A 207 GKKFESMVKMKSSVKN-GVYLINGNHPERIGD-I-GKESFIGTVI 248 (249)
T ss_dssp HHHHHHHHHHHTTCTT-CEEEEETTSGGGGGG-T-TSTTCCSEEE
T ss_pred HHHHHHHHHHHHhcCC-EEEEEeCCChhHHHH-h-CCCCCCCEEe
Confidence 9999999999 89999 699999999999877 5 56888 9998
No 21
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=100.00 E-value=1.2e-32 Score=283.31 Aligned_cols=272 Identities=13% Similarity=0.137 Sum_probs=193.2
Q ss_pred HhhhHHHhh--cCCeEEEEeCCccCCCCC------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCc
Q 010333 89 EAWPYLWAH--RGGTFVVIISGEIVSSPY------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRY 160 (513)
Q Consensus 89 ~a~pYi~~~--rgkt~VIKlGGs~l~~~~------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~ 160 (513)
+++-||+.- .+|++|||+||++|.++. .+.++++|+.|.+.|+++||||||||||+..+.+++....+..+.
T Consensus 12 ~~~~~~~~d~K~MkRIVIklGGnAL~~~~~~q~~~~~~~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~~~~~~ 91 (332)
T 4axs_A 12 HSSGHIDDDDKHMSRIVIALGGNALGDNPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKT 91 (332)
T ss_dssp --------------CEEEEECGGGGCSSHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTTTTSCC
T ss_pred cccccccccccCcceEEEEEChhhcCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhccccCCC
Confidence 344455442 347899999999998742 578999999999999999999999999998877665544444444
Q ss_pred cCCCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcce----eeEeeecCCceeee-eecccc----------
Q 010333 161 RITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLAA-KRKGVV---------- 225 (513)
Q Consensus 161 RvTd~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~----av~l~~~dGnfvtA-~p~Gvi---------- 225 (513)
+.++..... .+..|.+.+.|+..|. +.|.++|++.+.. ++.++..|..|... +|.|..
T Consensus 92 ~~~~l~~~~--a~tqg~ig~~l~~~l~-----~~l~~~gi~~~v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~ 164 (332)
T 4axs_A 92 ALVPFAEAG--GMSQGYIGYHMLTAIS-----NELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEAN 164 (332)
T ss_dssp CCCCHHHHH--HHHHHHHHHHHHHHHH-----HHHHHTTCCCCEEECCCEEEECTTCHHHHSCCEECSCCCC--------
T ss_pred CCchhHHHH--HHHHHHHHHHHHHHHH-----HHHHhcCCCcceeeeeeeeeecccchhhhCcCceeccccCHHHHHHHH
Confidence 444433322 4577888888888775 4788888875543 45666666656552 444431
Q ss_pred --cc-----------ccCcccceEEEecHHHHHHHhcCCceEEEcCC--------ccCCCCceeecChHHHHHHHHHHcC
Q 010333 226 --DG-----------VDYGATGEVKKVDVTRMRERLDGGCLVILSNL--------GYSSSGEVLNCNTYEVATACALAIE 284 (513)
Q Consensus 226 --dG-----------vD~g~tG~Vr~Vd~~~I~~LLd~G~IPVIspv--------g~s~tGei~nld~D~vAa~lA~aL~ 284 (513)
++ .+....+.++.++.+.|+.|+++|+|||+++. +.+.+|+.+|+|+|.+|+.+|.+|+
T Consensus 165 ~~~~~~~~~~~~g~rrvV~sp~p~~ive~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~ 244 (332)
T 4axs_A 165 NPNSVIVEDAGRGFRKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVN 244 (332)
T ss_dssp CTTSCCC--------CEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTT
T ss_pred hcCCEEEEccCCCceEECCCCCCceeecHHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhC
Confidence 00 01223345677899999999999999887532 2234578899999999999999999
Q ss_pred CCEEEEeecccccC-----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcc
Q 010333 285 ADKLICIIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTF 359 (513)
Q Consensus 285 ADkLIfLTDv~gld-----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (513)
||+||+||||+|++ ++.++|++++.+|+++++.++.
T Consensus 245 Ad~LiiLTdV~gv~~~~~~~~~~~i~~it~~e~~~~~~~g~--------------------------------------- 285 (332)
T 4axs_A 245 ADIFVVLTAVDYVYVDFNKPTQKALKTVDVKALNNFINQDQ--------------------------------------- 285 (332)
T ss_dssp CSEEEEECSCSSCEESTTSTTCEECSSCBHHHHHHHHHTTC---------------------------------------
T ss_pred CceEEEEecCCceEcCCCCcchhhcccCCHHHHHHHHHCCC---------------------------------------
Confidence 99999999999973 4568999999999999875321
Q ss_pred cccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCC
Q 010333 360 SERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGM 439 (513)
Q Consensus 360 ~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~ 439 (513)
|++| | |.+|++||+.|++.|+.+++|+... +. +.+++. .+.
T Consensus 286 -------------~~~G-g---------------------M~pKv~Aa~~~v~~g~g~~~iI~~~-~~--~~~~l~-g~~ 326 (332)
T 4axs_A 286 -------------FAKG-S---------------------MLPKIKAAMGFVNGHPNRSAIIADL-SK--VEDALK-GLS 326 (332)
T ss_dssp -------------SCTT-T---------------------THHHHHHHHHHHTTCTTCEEEEECS-TT--HHHHTT-TSS
T ss_pred -------------cCcC-C---------------------cHHHHHHHHHHHHhCCCcEEEECCH-HH--HHHHHC-CCC
Confidence 3355 5 9999999999999999888887532 22 456654 468
Q ss_pred eeEEec
Q 010333 440 GTMVAS 445 (513)
Q Consensus 440 GT~I~~ 445 (513)
||+|.+
T Consensus 327 GT~IvA 332 (332)
T 4axs_A 327 GTKIIA 332 (332)
T ss_dssp SEEEBC
T ss_pred CcEEeC
Confidence 999964
No 22
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=9.6e-33 Score=281.11 Aligned_cols=259 Identities=17% Similarity=0.162 Sum_probs=197.5
Q ss_pred cCCeEEEEeCCccCCC--C--C-------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHH
Q 010333 98 RGGTFVVIISGEIVSS--P--Y-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSE 166 (513)
Q Consensus 98 rgkt~VIKlGGs~l~~--~--~-------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~ 166 (513)
.+|++||+|||++|.. + . ++..++.|+.|.+.|++|||+||+|||+..++....... ...++.
T Consensus 4 ~~~~ivvalgGnal~~~g~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~------~~~~~~ 77 (317)
T 3kzf_A 4 AGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAA------GVSPEM 77 (317)
T ss_dssp CCCEEEEECCSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTT------SSSCCC
T ss_pred CCCEEEEEcChhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhcc------ccCCCC
Confidence 4589999999999953 1 1 467899999998999999999999999987766543221 123556
Q ss_pred HHHHH-HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCccee----eEeeecCCceee-eeeccccc------c-------
Q 010333 167 SLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHE----VGVSVASGNFLA-AKRKGVVD------G------- 227 (513)
Q Consensus 167 ~L~~a-~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~a----v~l~~~dGnfvt-A~p~Gvid------G------- 227 (513)
.|+.+ .+.+|.+.+.|+++|. +.|.++|++.|+.. +.+...|..|-. .||+|.+- .
T Consensus 78 pld~~~A~sqG~igy~l~~al~-----~~l~~~g~~~~v~t~itq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~ 152 (317)
T 3kzf_A 78 PLHVCGAMSQGFIGYMMSQAMD-----NVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPG 152 (317)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-----HHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEECC-----------------
T ss_pred CccccCchhhHHHHHHHHHHHH-----HHHHhcCCCCceeEEEEEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccC
Confidence 78876 6799999999988886 57889999877653 445556666665 35666320 0
Q ss_pred ----cc--Ccccc------eEEEecHHHHHHHhcCCceEEEc-----CCccC---CCCceeecChHHHHHHHHHHcCCCE
Q 010333 228 ----VD--YGATG------EVKKVDVTRMRERLDGGCLVILS-----NLGYS---SSGEVLNCNTYEVATACALAIEADK 287 (513)
Q Consensus 228 ----vD--~g~tG------~Vr~Vd~~~I~~LLd~G~IPVIs-----pvg~s---~tGei~nld~D~vAa~lA~aL~ADk 287 (513)
.| -+|.- -++.||.+.|+.||++|+|||++ |+..+ .+|+.+|+|+|++|+++|.+|+||+
T Consensus 153 ~~~~ed~grg~RrvV~sP~P~~iVe~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~ 232 (317)
T 3kzf_A 153 KILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDY 232 (317)
T ss_dssp ---------CCCCEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSC
T ss_pred CeEeecCCCCeeeecCCCCCcceECHHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCE
Confidence 11 12222 13689999999999999998888 76654 3567789999999999999999999
Q ss_pred EEEeecccccC-----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCccccc
Q 010333 288 LICIIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSER 362 (513)
Q Consensus 288 LIfLTDv~gld-----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (513)
||||||++|++ +++++|++++.+|+++++.++
T Consensus 233 LIiLTDVdGVy~dp~~p~a~~I~~it~~e~~~li~~g------------------------------------------- 269 (317)
T 3kzf_A 233 LMILTDVLNACINYKKPDERKLEEIKLSEILALEKDG------------------------------------------- 269 (317)
T ss_dssp EEECCSSSSCEESSSCSSCEECCEEEHHHHHHHHTTT-------------------------------------------
T ss_pred EEEecCCCeeeCCCCCCCCeECcCcCHHHHHHHHhcC-------------------------------------------
Confidence 99999999873 568999999999998886321
Q ss_pred ccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeE
Q 010333 363 RIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTM 442 (513)
Q Consensus 363 ~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~ 442 (513)
.+++| | |.+||+||+.||+.|+.++||+|+. .+.++|+++ .||+
T Consensus 270 ---------~~~~G-G---------------------M~pKl~AA~~av~~gg~~v~I~s~~----~l~~~l~G~-~GT~ 313 (317)
T 3kzf_A 270 ---------HFAAG-S---------------------MGPKVRAAIEFTQATGKMSIITSLS----TAVDALNGK-CGTR 313 (317)
T ss_dssp ---------SCC---C---------------------CHHHHHHHHHHHHHHCCCEEECCGG----GHHHHHTTS-SSEE
T ss_pred ---------CCCCC-C---------------------HHHHHHHHHHHHHcCCCeEEEcchH----HHHHHHCCC-CCeE
Confidence 12245 5 9999999999999999999999963 267888765 8999
Q ss_pred EecC
Q 010333 443 VASD 446 (513)
Q Consensus 443 I~~d 446 (513)
|.+|
T Consensus 314 I~~d 317 (317)
T 3kzf_A 314 IIKD 317 (317)
T ss_dssp EECC
T ss_pred EecC
Confidence 9875
No 23
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=100.00 E-value=1.2e-32 Score=286.77 Aligned_cols=239 Identities=18% Similarity=0.240 Sum_probs=167.3
Q ss_pred CCeEEEEeCCccCCCC-------ChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHH
Q 010333 99 GGTFVVIISGEIVSSP-------YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~-------~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a 171 (513)
.|++||||||++++++ .+..++++|+.|++.|+++||||||+++ ..+.++|++.+ ..+.+.++++
T Consensus 4 ~k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGgi~--~g~~~lg~~~~------~~~l~~~qa~ 75 (367)
T 2j5v_A 4 SQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIA--AGREHLGYPEL------PATIASKQLL 75 (367)
T ss_dssp CCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHH--HHHHHHTSCCC------CSSHHHHHHH
T ss_pred CCEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCHHH--HHHHHcCCCCC------CCCHHHHHHH
Confidence 4899999999999984 2789999999999999999999999855 56678888753 3444455544
Q ss_pred HHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecH-HHHHHHhcC
Q 010333 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV-TRMRERLDG 250 (513)
Q Consensus 172 ~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~-~~I~~LLd~ 250 (513)
.++|+.. ++..|+ ..|.++|++ +.++..... | +.++++++|. +.|+++|++
T Consensus 76 -aavGq~~--l~~~~~-----~~l~~~G~~----~~qvllt~~--------------d--~~~~~r~~n~~~~i~~LL~~ 127 (367)
T 2j5v_A 76 -AAVGQSR--LIQLWE-----QLFSIYGIH----VGQMLLTRA--------------D--MEDRERFLNARDTLRALLDN 127 (367)
T ss_dssp -HHHHHHH--HHHHHH-----HHHHTTTCC----EEEEEECGG--------------G--GSSHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHH--HHHHHH-----HHHHHcCCc----eEEEEEecc--------------c--ccCceEEEhHHHHHHHHHHC
Confidence 4788765 555554 468889987 233322221 2 2455677787 999999999
Q ss_pred CceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCH--HHHHHHHHHhhh
Q 010333 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEADSLIRQRVK 321 (513)
Q Consensus 251 G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~--~Ea~~ll~~~~~ 321 (513)
|.|||+++.+.-.++|++|+|+|++|+.+|.+|+||+|+|+|||+|++ |++++|++++. +|++++...
T Consensus 128 g~IPIv~end~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~--- 204 (367)
T 2j5v_A 128 NVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGD--- 204 (367)
T ss_dssp TCEEEEEECTTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC------------------------------------
T ss_pred CCEEEECCCCceecccccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhc---
Confidence 999999965544566789999999999999999999999999999973 25899999998 677666421
Q ss_pred hhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcH
Q 010333 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (513)
Q Consensus 322 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~ 401 (513)
.++++++| | |.
T Consensus 205 -----------------------------------------------~~s~~gtG-g---------------------M~ 215 (367)
T 2j5v_A 205 -----------------------------------------------SVSGLGTG-G---------------------MS 215 (367)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred -----------------------------------------------cCCCcCcC-c---------------------cH
Confidence 12334566 5 99
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCC
Q 010333 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (513)
Q Consensus 402 ~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ 447 (513)
+|++||..|+++|++ +||+|+..++. |.++|++++.||+|.++.
T Consensus 216 ~Kl~Aa~~a~~~Gv~-v~I~~g~~~~~-L~~~l~g~~~GT~i~~~~ 259 (367)
T 2j5v_A 216 TKLQAADVACRAGID-TIIAAGSKPGV-IGDVMEGISVGTLFHAQA 259 (367)
T ss_dssp HHHHHHHHHHHTTCE-EEEEETTSTTH-HHHHHHTCCCSEEECCCS
T ss_pred HHHHHHHHHHHcCCC-EEEEcCCCchH-HHHHhcCCCCcEEEEcCc
Confidence 999999999999997 99999999998 589999999999998754
No 24
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=100.00 E-value=8.3e-33 Score=272.51 Aligned_cols=229 Identities=15% Similarity=0.150 Sum_probs=174.6
Q ss_pred CeEEEEeCCccCC-----CCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHH
Q 010333 100 GTFVVIISGEIVS-----SPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAME 173 (513)
Q Consensus 100 kt~VIKlGGs~l~-----~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~ 173 (513)
|++|||+||++++ +++ +..++++|+.|++. +++||||||+++ ..+.++|++. .|+++.+. ..
T Consensus 2 k~iViKlGGs~l~~~~~~~~~~~~~~~~~i~~l~~~-~~vVlVhgGg~~--~~~~~~g~~~-----~~~~~~~~----l~ 69 (251)
T 2ako_A 2 KRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEK-YEVILVTSAAIS--AGHTKLDIDR-----KNLINKQV----LA 69 (251)
T ss_dssp CEEEEEECHHHHBCSSSBCHHHHHHHHHHHHHHHHH-SEEEEEECCHHH--HHHHHCCCCS-----SSHHHHHH----HH
T ss_pred CEEEEEeCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCHHH--HHHHHhCCcc-----CCchHHHH----HH
Confidence 7899999999999 322 78999999999888 999999999855 6788899875 24544432 23
Q ss_pred HHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecH-HHHHHHhcCCc
Q 010333 174 AAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV-TRMRERLDGGC 252 (513)
Q Consensus 174 a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~-~~I~~LLd~G~ 252 (513)
++++ ..++..|. ..|.++|++ +.++.+.++ | ++++++++|. +.|+.+|++|+
T Consensus 70 ~~~q--~~l~~~~~-----~~l~~~G~~----~~~i~~~~~--------------~--~~~~~~~~~~~~~i~~ll~~g~ 122 (251)
T 2ako_A 70 AIGQ--PFLISVYN-----ELLAKFNKL----GGQILLTGK--------------D--FDSRKATKHAKNAIDMMINLGI 122 (251)
T ss_dssp HHHH--HHHHHHHH-----HHHGGGTCC----EEEEEECTG--------------G--GGCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHH--HHHHHHHH-----HHHHHcCCc----EEEEEeccc--------------h--hcCcceEehHHHHHHHHHHCCC
Confidence 4454 33444443 467888886 334433332 2 3566667877 99999999999
Q ss_pred eEEEc---CCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHH--HHHHHHHHhh
Q 010333 253 LVILS---NLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQ--EADSLIRQRV 320 (513)
Q Consensus 253 IPVIs---pvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~--Ea~~ll~~~~ 320 (513)
|||++ |+++ ++.+|+|+|++|+.+|.+|+||+|+|+|||+|++ +++++|++++.. |+.+++..
T Consensus 123 ipVi~~~d~v~~---~~~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~-- 197 (251)
T 2ako_A 123 LPIINENDATAI---EEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIK-- 197 (251)
T ss_dssp EEEEEECTTTCC---HHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC-------
T ss_pred EEEEeCCCceee---cceeecCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcc--
Confidence 99999 5554 3558999999999999999999999999999973 468999999987 77766531
Q ss_pred hhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCc
Q 010333 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (513)
Q Consensus 321 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m 400 (513)
.++++++| | |
T Consensus 198 ------------------------------------------------~~~~~~~g-g---------------------m 207 (251)
T 2ako_A 198 ------------------------------------------------TGSEHGTG-G---------------------I 207 (251)
T ss_dssp ----------------------------------------------------CBSC-H---------------------H
T ss_pred ------------------------------------------------cCCCCccC-c---------------------h
Confidence 01223455 4 9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCchhhHHH--HHcCCCCeeEEe
Q 010333 401 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLE--LFKRDGMGTMVA 444 (513)
Q Consensus 401 ~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~E--Lft~dG~GT~I~ 444 (513)
.+|++||..|+++|++ +||+|++.++.| .+ +|+++++||+|.
T Consensus 208 ~~k~~aa~~a~~~gv~-v~I~~g~~~~~l-~~~~~~~g~~~GT~i~ 251 (251)
T 2ako_A 208 VTKLKAAKFLLEHNKK-MFLASGFDLSVA-KTFLLEDKQIGGTLFE 251 (251)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEESSSCHHH-HHHHHSCCCCSSEEEC
T ss_pred HHHHHHHHHHHHCCCe-EEEEeCCChhhh-hhhHHhcCCCCceEeC
Confidence 9999999999999997 999999999986 77 899999999984
No 25
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.98 E-value=1.3e-32 Score=275.98 Aligned_cols=228 Identities=18% Similarity=0.143 Sum_probs=177.6
Q ss_pred HHHhhhHHHhhcCCeEEEEeCCccCCCC---ChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCCccCC
Q 010333 87 FREAWPYLWAHRGGTFVVIISGEIVSSP---YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRIT 163 (513)
Q Consensus 87 fR~a~pYi~~~rgkt~VIKlGGs~l~~~---~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G~RvT 163 (513)
=.+++|||+.||+ ++|||+||+ ++++ .+..++++|+.|+ .|+++||||||+++++..+. ++.+ .|.
T Consensus 28 ~~~~~pyi~~~~~-~iVIKiGGs-l~~~~~~~l~~l~~~I~~l~-~G~~vVlV~GGg~~~~~~~~-~~~~----~gl--- 96 (276)
T 2ogx_A 28 PVAGKRPIRLLPW-LQVVKIGGR-VMDRGADAILPLVEELRKLL-PEHRLLILTGAGVRARHVFS-VGLD----LGL--- 96 (276)
T ss_dssp ---CCCCCCSSTT-EEEEEECHH-HHTTTHHHHHHHHHHHHHHT-TTCEEEEEECCTHHHHHHHH-HHHH----TTC---
T ss_pred hcccCchhhhcCC-eEEEEEChh-hcCCCHHHHHHHHHHHHHHh-CCCeEEEEECcHHHHHHHHh-ccCc----CCC---
Confidence 4568999999999 999999999 8774 3899999999998 89999999999999987776 4433 233
Q ss_pred CHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHH
Q 010333 164 DSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTR 243 (513)
Q Consensus 164 d~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~ 243 (513)
+..+++.+....++++..+++.+ +..+|++ ++. + ..+.+.
T Consensus 97 ~~~~l~~v~~~~~~~n~~l~~~l--------l~~~g~~----~v~---------------------~-------~~~~~~ 136 (276)
T 2ogx_A 97 PVGSLAPLAASEAGQNGHILAAM--------LASEGVS----YVE---------------------H-------PTVADQ 136 (276)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH--------HGGGTCC----BCC---------------------H-------HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH--------HHhcCCC----ccc---------------------c-------cChHHH
Confidence 45677777556688888887763 4455553 110 1 126789
Q ss_pred HHHHhcCCceEEEcCC-ccC--CC-Cc-eeecChHHHHHHHHHHcCCCEEEEeeccccc---CCC------CccccccCH
Q 010333 244 MRERLDGGCLVILSNL-GYS--SS-GE-VLNCNTYEVATACALAIEADKLICIIDGPIL---DES------GHLIRFLTL 309 (513)
Q Consensus 244 I~~LLd~G~IPVIspv-g~s--~t-Ge-i~nld~D~vAa~lA~aL~ADkLIfLTDv~gl---d~~------g~lI~~Lt~ 309 (513)
|+.+|++|.|||++++ +++ .. |+ ++|+|+|.+|+.+|.+|+||+|+|+|||+|+ ||+ +++|++++.
T Consensus 137 i~~lL~~g~IpVi~~~~~~~~~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~ 216 (276)
T 2ogx_A 137 LAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSA 216 (276)
T ss_dssp HHHHHHHSSEEEEESSCTTGGGCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEH
T ss_pred HHHHHhCCCEEEEcCCcccccccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCH
Confidence 9999999999999993 343 22 33 4899999999999999999999999999997 332 899999998
Q ss_pred HHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCcccccccccc
Q 010333 310 QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIG 389 (513)
Q Consensus 310 ~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g 389 (513)
.|+.++. ++| |
T Consensus 217 ~e~~~~~---------------------------------------------------------g~g-g----------- 227 (276)
T 2ogx_A 217 TDLAKSE---------------------------------------------------------GPL-P----------- 227 (276)
T ss_dssp HHHHTSC---------------------------------------------------------SCC-S-----------
T ss_pred HHHHHHh---------------------------------------------------------CcC-C-----------
Confidence 7655442 134 4
Q ss_pred ccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecC
Q 010333 390 GQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (513)
Q Consensus 390 ~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d 446 (513)
|.+|+.++..+.+.|+ ++||+|+..++.| .+++++++.||+|.++
T Consensus 228 ----------M~~K~~~~~~~~~~~~-~v~I~~g~~~~~l-~~~l~g~~~GT~i~~~ 272 (276)
T 2ogx_A 228 ----------VDRALLDVMATARHIE-RVQVVNGLVPGRL-TAALRGEHVGTLIRTG 272 (276)
T ss_dssp ----------SCHHHHHHHHTCSSCC-EEEEEETTSTTHH-HHHHTTCCCSEEEECS
T ss_pred ----------hHHHHHHHHHHhcCCC-eEEEEECCCccHH-HHHHcCCCCceEEccC
Confidence 8889988877767666 6999999999985 5677888999999875
No 26
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=99.97 E-value=3.5e-30 Score=272.27 Aligned_cols=260 Identities=18% Similarity=0.205 Sum_probs=186.9
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHh
Q 010333 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPG-THVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAG 176 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHG-ggpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G 176 (513)
+|++|+||||+++.+++ +.+++++|+.+++.|+++||||| ++++++.+++..+.... ++ ++..++.+. ++|
T Consensus 1 m~~iViK~GGssl~~~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~-----~~-~~~~~d~~~-a~G 73 (421)
T 3ab4_A 1 MALVVQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNP-----VP-PAREMDMLL-TAG 73 (421)
T ss_dssp -CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCS-----SC-CHHHHHHHH-HHH
T ss_pred CCeEEEEEChhHhCCHHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhcc-----CC-CHHHHHHHH-HHH
Confidence 47899999999999854 89999999999999999999997 78899988887643221 22 567788765 568
Q ss_pred H-HHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEE
Q 010333 177 G-IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVI 255 (513)
Q Consensus 177 ~-l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPV 255 (513)
+ ++..+.+. .|+++|++ +..+++.+..++++++ |+ .|+++.++.+.|+++|++|.|||
T Consensus 74 e~~~~~ll~~--------~L~~~G~~----a~~l~~~~~~~~t~~~--------~~-~~~v~~~~~~~i~~~l~~g~ipV 132 (421)
T 3ab4_A 74 ERISNALVAM--------AIESLGAE----AQSFTGSQAGVLTTER--------HG-NARIVDVTPGRVREALDEGKICI 132 (421)
T ss_dssp HHHHHHHHHH--------HHHHTTCC----EEECCCC--------------------------CCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHH--------HHHHCCCC----eEEEehhhceEEeccC--------CC-CeeechhhHHHHHHHHhCCCEEE
Confidence 6 66654332 47889987 5677777666777664 22 48888999999999999999999
Q ss_pred EcCC-ccCCC-Cceeec---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhhh
Q 010333 256 LSNL-GYSSS-GEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQS 323 (513)
Q Consensus 256 Ispv-g~s~t-Gei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~~ 323 (513)
++|+ |++++ |+++++ ++|.+|+.+|.+|+||+|+++|||+|++ +++++|++++.+|+.++...++
T Consensus 133 v~g~~g~~~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~Ga--- 209 (421)
T 3ab4_A 133 VAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGS--- 209 (421)
T ss_dssp C------------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTTC---
T ss_pred EeCCcCcCCCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcCC---
Confidence 9997 88999 999998 9999999999999999999999999973 3689999999999998863211
Q ss_pred hHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHH
Q 010333 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (513)
Q Consensus 324 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~K 403 (513)
+..|
T Consensus 210 ----------------------------------------------------------------------------~v~~ 213 (421)
T 3ab4_A 210 ----------------------------------------------------------------------------KILV 213 (421)
T ss_dssp ----------------------------------------------------------------------------CSSC
T ss_pred ----------------------------------------------------------------------------cCch
Confidence 1224
Q ss_pred HHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCC----cc--ccccc------------ccChHhHH-H
Q 010333 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLY----EG--TRTAK------------VTDLSGIK-Q 464 (513)
Q Consensus 404 L~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~y----e~--iR~A~------------~~Dv~gI~-~ 464 (513)
++|+..|++.|++ +||.|+..+ +.||+|.++++ |. +|..+ ..|.+|++ +
T Consensus 214 ~~a~~~a~~~gi~-v~I~n~~~~-----------~~GT~I~~~~~~~~~~~~~i~~i~~~~~~~~i~v~~~~~~~g~~~~ 281 (421)
T 3ab4_A 214 LRSVEYARAFNVP-LRVRSSYSN-----------DPGTLIAGSMEDIPVEEAVLTGVATDKSEAKVTVLGISDKPGEAAK 281 (421)
T ss_dssp HHHHHHHHHTTCC-EEEEESSSC-----------CCCEEECSCGGGSCTTTCCCCEEEEECSEEEEEEEEEESSTTHHHH
T ss_pred HHHHHHHHHcCCC-EEEecCcCC-----------CCCeEEEecCcccccccCccceEEeeCCEEEEEEeccCCcccHHHH
Confidence 6799999999998 899998764 78999998745 44 78777 67888888 9
Q ss_pred hhhhhHhcCcccc
Q 010333 465 IIQPLVESGALVR 477 (513)
Q Consensus 465 Li~PLe~~GiLv~ 477 (513)
+.++|++.||.|.
T Consensus 282 If~~La~~~I~vd 294 (421)
T 3ab4_A 282 VFRALADAEINID 294 (421)
T ss_dssp HHHHHHHTTCCCE
T ss_pred HHHHHHHcCCcEE
Confidence 9999999998654
No 27
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.97 E-value=2.9e-30 Score=250.70 Aligned_cols=210 Identities=16% Similarity=0.138 Sum_probs=166.2
Q ss_pred CeEEEEeCCccCC--CCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHH---HHHcCCCccccCCccCCCHHHHHHHHH
Q 010333 100 GTFVVIISGEIVS--SPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKL---LSERGHEAKYLGRYRITDSESLAAAME 173 (513)
Q Consensus 100 kt~VIKlGGs~l~--~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~---L~~~Gi~~~~~~G~RvTd~~~L~~a~~ 173 (513)
+++||||||++++ +++ +.+++++|+.|++.|+++|||||||++++.. ++++|++. .+++....
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~~g~~~-----------~~~~~~~~ 69 (226)
T 2j4j_A 1 MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGE-----------AYLDLLGI 69 (226)
T ss_dssp CEEEEEECTHHHHTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTTCCH-----------HHHHHHHH
T ss_pred CeEEEEeccccccCCCHHHHHHHHHHHHHHHhCCCeEEEEECcchHhchhHHHHHHhCCCc-----------ccHHHHHH
Confidence 5799999999998 533 8999999999999999999999999999885 67777652 45665544
Q ss_pred HHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCce
Q 010333 174 AAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCL 253 (513)
Q Consensus 174 a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~I 253 (513)
..+.++..|++. .|+++|++ + + .+|.+.|+++|+.|.|
T Consensus 70 ~~~~~~~~l~~~--------~l~~~g~~----~------~------------------------~~~~~~i~~ll~~g~i 107 (226)
T 2j4j_A 70 WASRLNAYLVMF--------SLQDLAYM----H------V------------------------PQSLEEFIQDWSHGKV 107 (226)
T ss_dssp HHHHHHHHHHHH--------HHTTSBCS----C------C------------------------CSSHHHHHHHHTTSSB
T ss_pred HHHHHHHHHHHH--------HHHHhCCC----C------C------------------------cCCHHHHHHHHHCCCE
Confidence 455667667542 35566653 1 0 2467889999999999
Q ss_pred EEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhhhhHH
Q 010333 254 VILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIA 326 (513)
Q Consensus 254 PVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~ 326 (513)
||+++ + ..|+|+|.+|+.+|.+|+||+|+|+|||+|++ +++++|++++.+|+.+++...
T Consensus 108 pVi~g-g------~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~------- 173 (226)
T 2j4j_A 108 VVTGG-F------QPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGS------- 173 (226)
T ss_dssp EEECC-C------STTSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC---------
T ss_pred EEEcC-C------CCCCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcC-------
Confidence 99999 2 23899999999999999999999999999973 358999999999988775320
Q ss_pred HhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCc--HHHH
Q 010333 327 ANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY--LSEL 404 (513)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m--~~KL 404 (513)
++.+| | | .+|+
T Consensus 174 ---------------------------------------------~~~~g-g---------------------m~~~~k~ 186 (226)
T 2j4j_A 174 ---------------------------------------------QSVQA-G---------------------TYELLDP 186 (226)
T ss_dssp ---------------------------------------------------------------------------CCSCH
T ss_pred ---------------------------------------------CCCcC-C---------------------ccccchH
Confidence 12245 5 5 7789
Q ss_pred HHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEec
Q 010333 405 AAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (513)
Q Consensus 405 ~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~ 445 (513)
++|..|++.|++ +||+|+..++.| .++|++++.||+|.+
T Consensus 187 ~a~~~a~~~gi~-v~I~~~~~~~~l-~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 187 LAIKIVERSKIR-VIVMNYRKLNRI-IDILKGEEVSSIIEP 225 (226)
T ss_dssp HHHHHHHHTTCE-EEEEEGGGGGGH-HHHHTTCSSCEEEEC
T ss_pred HHHHHHHHCCCe-EEEEeCCChhHH-HHHHcCCCCceEEee
Confidence 999999999997 999999999985 889999999999975
No 28
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=99.97 E-value=5.9e-30 Score=251.95 Aligned_cols=219 Identities=19% Similarity=0.128 Sum_probs=166.7
Q ss_pred cCCeEEEEeCCccCCCC-------C-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCC-ccCCCHHHH
Q 010333 98 RGGTFVVIISGEIVSSP-------Y-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGR-YRITDSESL 168 (513)
Q Consensus 98 rgkt~VIKlGGs~l~~~-------~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G-~RvTd~~~L 168 (513)
+.|++|||+||++++++ + +++++++|+.|+..|+++|||||||+.+..... . ..| .+.++.+.+
T Consensus 6 ~~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~~------~-~~G~~~~~~~~~~ 78 (240)
T 4a7w_A 6 KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSA------A-QGGIIRRTSGDYM 78 (240)
T ss_dssp CCCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC----------------CCCHHHHHHH
T ss_pred CCCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhHH------H-hcCCCCCCCHHHH
Confidence 35899999999999953 2 688999999999999999999999887653321 1 134 334444344
Q ss_pred HHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHh
Q 010333 169 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL 248 (513)
Q Consensus 169 ~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LL 248 (513)
+. .++.+|..+.+. .|+++|++ ++.++..|... +.+..|.+.++++|
T Consensus 79 ~~---la~~~n~~l~~~--------~l~~~G~~----av~lt~~d~~~------------------~~~~~~~~~i~~lL 125 (240)
T 4a7w_A 79 GM---LATVINAVAMQE--------ALEHIGLD----TRVQSAIEIKE------------------ICESYIYRKAIRHL 125 (240)
T ss_dssp HH---HHHHHHHHHHHH--------HHHHTTCC----EEEEESSCCTT------------------TSEECCHHHHHHHH
T ss_pred HH---HHHHHHHHHHHH--------HHHHCCCC----EEEecHHHcCc------------------ccCcCcHHHHHHHH
Confidence 33 456777777643 58899987 57776655321 11346889999999
Q ss_pred cCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhh
Q 010333 249 DGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVK 321 (513)
Q Consensus 249 d~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~ 321 (513)
++|.|||+++. +|.. ++|+|++|+.+|.+|+||+|+|+|||+|++ |++++|++++.+|+.+. +
T Consensus 126 ~~g~ipVi~~~----~g~~-~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g-- 195 (240)
T 4a7w_A 126 EKGRVVIFGAG----TGNP-FFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG---D-- 195 (240)
T ss_dssp HTTCEEEEEST----TSCT-TSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHHHS---S--
T ss_pred HCCCEEEEeCC----CCCC-CCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHHhc---C--
Confidence 99999999982 3443 689999999999999999999999999972 35788999998775321 0
Q ss_pred hhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcH
Q 010333 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (513)
Q Consensus 322 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~ 401 (513)
.+ + |
T Consensus 196 -----------------------------------------------------~~-~---------------------m- 199 (240)
T 4a7w_A 196 -----------------------------------------------------IE-V---------------------M- 199 (240)
T ss_dssp -----------------------------------------------------CC-S---------------------S-
T ss_pred -----------------------------------------------------cc-c---------------------c-
Confidence 12 3 4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 402 ~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
+++||..|++.|++ +||+|++.++.|+.++|+++|+||||.
T Consensus 200 -~~~a~~~a~~~gv~-v~I~~g~~~~~l~~~l~g~~g~GT~i~ 240 (240)
T 4a7w_A 200 -DDTAISLAKDNKLP-IVVCNMFKKGNLLQVIKHQQGVFSMVK 240 (240)
T ss_dssp -CHHHHHHHHHTTCC-EEEEESSSTTHHHHHHHHSCSSCEEEC
T ss_pred -HHHHHHHHHHCCCe-EEEECCCCccHHHHHHCCCCCCceeeC
Confidence 47899999999997 999999999999999999999999983
No 29
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.97 E-value=1.2e-30 Score=260.65 Aligned_cols=231 Identities=16% Similarity=0.172 Sum_probs=175.7
Q ss_pred HHHHHhhhHHHhhcC--CeEEEEeCCccCCCC---ChHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccccCC
Q 010333 85 KWFREAWPYLWAHRG--GTFVVIISGEIVSSP---YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGR 159 (513)
Q Consensus 85 ~~fR~a~pYi~~~rg--kt~VIKlGGs~l~~~---~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~~~G 159 (513)
+-+.++.||+...|. +++|||+||++++++ .+..++++|+.|+.. +++||||||+++.+ .+.+++.+. |
T Consensus 20 ~~~~~~~~~~~~~~~m~~~iVIKlGGs~l~~~~~~~~~~la~~I~~l~~~-~~vVlVhGGg~~~~-~~~~~~~~~----g 93 (270)
T 2ogx_B 20 PQLQAAAAAAADFRILPDATVIKIGGQSVIDRGRAAVYPLVDEIVAARKN-HKLLIGTGAGTRAR-HLYSIAAGL----G 93 (270)
T ss_dssp HHHHHHHHTSCCCCSSTTEEEEEECTTTTGGGCHHHHHHHHHHHHHHTTT-CEEEEEECCCHHHH-HHHHHHHHT----T
T ss_pred hhhhhhhcccchhhhccCeEEEEechHHhCCCCHHHHHHHHHHHHHHhcC-CcEEEEECChHHHH-HHHHHHHhc----C
Confidence 348899999987544 589999999999974 389999999999887 99999999999654 354444332 2
Q ss_pred ccCCCHHHHHH-HHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEE
Q 010333 160 YRITDSESLAA-AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKK 238 (513)
Q Consensus 160 ~RvTd~~~L~~-a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~ 238 (513)
. +...++. +++++|+.+..++++ |.++|++ .++ .
T Consensus 94 --~-~~~~~~~~~~~a~G~~~l~~~~~---------l~~~G~~--------------~vt-------------------~ 128 (270)
T 2ogx_B 94 --L-PAGVLAQLGSSVADQNAAMLGQL---------LAKHGIP--------------VVG-------------------G 128 (270)
T ss_dssp --C-CHHHHHHHHHHHHHHHHHHHHHH---------HGGGTCC--------------BCC-------------------S
T ss_pred --C-ChHHHHHHHHHHHHHHHHHHHHH---------HHhcCCc--------------eec-------------------H
Confidence 2 3444444 478899998777654 4556653 111 2
Q ss_pred ecHHHHHHHhcCCceEEEcCC-ccC------CCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccc
Q 010333 239 VDVTRMRERLDGGCLVILSNL-GYS------SSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLI 304 (513)
Q Consensus 239 Vd~~~I~~LLd~G~IPVIspv-g~s------~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI 304 (513)
.|.+.|+++|++|.|||++|. +++ .+|+..++|+|++|+.+|.+|+||+|+|+|||+|++ +++++|
T Consensus 129 ~d~~~i~~lL~~g~ipVi~g~~g~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i 208 (270)
T 2ogx_B 129 AGLSAVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFI 208 (270)
T ss_dssp STTCHHHHHCTTCCEEEEECSCTTGGGCCCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEE
T ss_pred hhHHHHHHHHhCCCEEEEeCCccccccccccccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEc
Confidence 344469999999999999986 444 246677899999999999999999999999999972 348999
Q ss_pred cccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccc
Q 010333 305 RFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQ 384 (513)
Q Consensus 305 ~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~ 384 (513)
++++.+|++++...+ +.++ | |
T Consensus 209 ~~i~~~e~~~~~~~g---------------------------------------------------~~~~-g-g------ 229 (270)
T 2ogx_B 209 PRISVDEMKAKGLHD---------------------------------------------------SILE-F-P------ 229 (270)
T ss_dssp SEEEHHHHHHTTCCC---------------------------------------------------TTSC-H-H------
T ss_pred ceeCHHHHHHHhcCC---------------------------------------------------Cccc-H-H------
Confidence 999998877664110 0011 2 3
Q ss_pred cccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecC
Q 010333 385 GFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (513)
Q Consensus 385 ~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d 446 (513)
|.+|+++|. .++ ++||+|++.++.| .++|++++.||+|.++
T Consensus 230 ---------------m~~kl~aa~----~~~-~v~I~~g~~~~~l-~~~l~g~~~GT~i~~~ 270 (270)
T 2ogx_B 230 ---------------VLDLLQSAQ----HVR-EVQVVNGLVPGNL-TRALAGEHVGTIITAS 270 (270)
T ss_dssp ---------------HHHHHHHCS----SCC-EEEEEETTSTTHH-HHHHTTCCCSEEEECC
T ss_pred ---------------HHHHHHHhh----cCC-cEEEEeCCCchHH-HHHHcCCCCCeEecCC
Confidence 999999875 345 7999999999985 8899999999999763
No 30
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.97 E-value=7.2e-30 Score=246.55 Aligned_cols=207 Identities=17% Similarity=0.096 Sum_probs=159.7
Q ss_pred CeEEEEeCCccCCC--CChHHHHHHHHHHHhCCCeEEEEeCChHHHHH---HHHHcCCCccccCCccCCCHHHHHHHHHH
Q 010333 100 GTFVVIISGEIVSS--PYLDPILKDIAFLHHLGIRFVLVPGTHVQIDK---LLSERGHEAKYLGRYRITDSESLAAAMEA 174 (513)
Q Consensus 100 kt~VIKlGGs~l~~--~~l~~l~~dIA~L~~lGirvVLVHGggpqI~~---~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a 174 (513)
+++|||+||+++++ +.+.+++++|+.|++ |+++|||||||++++. .++++|+ ++.+++.+..+
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~~g~-----------~~~~l~~~~~~ 68 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNESEKIREFAKTIESVAQ-QNQVFVVVGGGKLAREYIKSARELGA-----------SETFCDYIGIA 68 (219)
T ss_dssp CEEEEEECSSTTTTCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHHTTC-----------CHHHHHHHHHH
T ss_pred CeEEEEeChhhhCChHHHHHHHHHHHHHHcC-CCEEEEEECcchHhcchHHHHHHcCC-----------CccchHHHHHH
Confidence 57999999999998 348999999999999 9999999999999998 5677775 34677776556
Q ss_pred HhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceE
Q 010333 175 AGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLV 254 (513)
Q Consensus 175 ~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IP 254 (513)
.+.++..+++.+- .. ++ ++ +.+|.+.|+++|++|.||
T Consensus 69 ~~~~~~~l~~~~~--------~~-~~------------------~~----------------~~~~~~~i~~ll~~g~ip 105 (219)
T 2ij9_A 69 ATRLNAMLLISAI--------PS-AA------------------KK----------------VPVDFMEAEELSKLYRVV 105 (219)
T ss_dssp HHHHHHHHHHHHC--------TT-BC------------------SS----------------CCSSHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHH--------HH-hc------------------CC----------------CcCCHHHHHHHHHCCCEE
Confidence 7777877776531 11 00 00 135788899999999999
Q ss_pred EEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC---C----CCccccccCHHHHHHHHHHhhhhhhHHH
Q 010333 255 ILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIRQRVKQSEIAA 327 (513)
Q Consensus 255 VIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld---~----~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~ 327 (513)
|++| |..+| |+|++|+.+|.+|+||+|+|+|||+|++ | ++++|++++.+|+.+++...
T Consensus 106 Vi~~------g~~~~-~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~-------- 170 (219)
T 2ij9_A 106 VMGG------TFPGH-TTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRS-------- 170 (219)
T ss_dssp EECC------CSSSS-CTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC---------
T ss_pred EEeC------CCCCC-CchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcC--------
Confidence 9999 45677 9999999999999999999999999973 3 58999999999887764210
Q ss_pred hHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHH
Q 010333 328 NYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAA 407 (513)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA 407 (513)
++.+| || ..|..+|
T Consensus 171 --------------------------------------------g~~~g-~~---------------------~~~~~~a 184 (219)
T 2ij9_A 171 --------------------------------------------SAKAG-TN---------------------VVIDLLA 184 (219)
T ss_dssp ------------------------------------------------C-CC---------------------CCSCHHH
T ss_pred --------------------------------------------CCCCC-Cc---------------------cchHHHH
Confidence 01134 42 2334455
Q ss_pred HHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 408 AFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 408 ~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
..+|+.|+.++||+|+ .++.| .++|+++++||+|+
T Consensus 185 ~~~~~~~~~~v~I~~g-~~~~l-~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 185 AKIIERSKIKTYVILG-TPENI-MKAVKGEAVGTVIA 219 (219)
T ss_dssp HHHHHHHTCCEEEEEC-CHHHH-HHHHTTCCCSEEEC
T ss_pred HHHHHHCCCeEEEEEC-CHhHH-HHHHcCCCCCeEeC
Confidence 5655655556999999 99985 78999999999984
No 31
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.96 E-value=1e-28 Score=244.10 Aligned_cols=221 Identities=15% Similarity=0.134 Sum_probs=165.1
Q ss_pred CCeEEEEeCCccCCCC--------ChHHHHHHHHHHHhCCCeEEEEeCChHHHHHH-HHHcCCCccccCCccCCCHHHHH
Q 010333 99 GGTFVVIISGEIVSSP--------YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKL-LSERGHEAKYLGRYRITDSESLA 169 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~--------~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~-L~~~Gi~~~~~~G~RvTd~~~L~ 169 (513)
.|++||||||++++++ .+..++++|+.|++.|+++|||||||+++... ++++|+++++ .+.+
T Consensus 7 ~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~~~~lg~~~~~--------~~~~- 77 (252)
T 1z9d_A 7 YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQ--------ADYT- 77 (252)
T ss_dssp CSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHH--------HHHH-
T ss_pred CCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccchHHHcCCCCCc--------hHHH-
Confidence 5899999999999963 27899999999999999999999998875444 6777876532 1222
Q ss_pred HHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhc
Q 010333 170 AAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLD 249 (513)
Q Consensus 170 ~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd 249 (513)
....+.++..++. ..|.++|++ +..+++.+...+. | +.++.+. +++|+
T Consensus 78 --~~~~~~~~~~ll~--------~al~~~G~~----~~~~~~~~~~~~~----------~-------~~~~~~~-~~lL~ 125 (252)
T 1z9d_A 78 --GMLGTVMNALVMA--------DSLQHYGVD----TRVQTAIPMQNVA----------E-------PYIRGRA-LRHLE 125 (252)
T ss_dssp --HHHHHHHHHHHHH--------HHHHTTTCC----EEEEESSCBTTTB----------E-------ECCHHHH-HHHHH
T ss_pred --HHHHHHHHHHHHH--------HHHHHcCCC----eEEEecccccccc----------C-------cchHHHH-HHHHh
Confidence 2233455554322 247778876 4455443321110 1 1346555 89999
Q ss_pred CCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEee-cccccC-------CCCccccccCHHHHHHHHHHhhh
Q 010333 250 GGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICII-DGPILD-------ESGHLIRFLTLQEADSLIRQRVK 321 (513)
Q Consensus 250 ~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLT-Dv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~ 321 (513)
.|.|||++| .+| ..|+|+|++|+.+|.+|+||+|+|+| ||+|++ +++++|++++.+|+.++ +
T Consensus 126 ~g~IpVi~~----~~g-~~~~~~D~~Aa~lA~~l~Ad~LiilT~DVdGvy~~dP~~~~~a~~i~~i~~~e~~~~---~-- 195 (252)
T 1z9d_A 126 KNRIVVFGA----GIG-SPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKR---G-- 195 (252)
T ss_dssp TTCEEEEES----TTS-CTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHTT---T--
T ss_pred CCCEEEEeC----CcC-CCCCChHHHHHHHHHhcCCCEEEEecCCCCeeeCCCCCCCCCCeEeeEecHHHHHhc---c--
Confidence 999999998 223 45899999999999999999999999 999973 25899999998775431 0
Q ss_pred hhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcH
Q 010333 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (513)
Q Consensus 322 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~ 401 (513)
.| + |
T Consensus 196 -----------------------------------------------------~~-~---------------------m- 199 (252)
T 1z9d_A 196 -----------------------------------------------------LK-I---------------------M- 199 (252)
T ss_dssp -----------------------------------------------------CC-C---------------------S-
T ss_pred -----------------------------------------------------cc-c---------------------c-
Confidence 12 3 6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCCc
Q 010333 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYE 449 (513)
Q Consensus 402 ~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ye 449 (513)
|++||..|++.|++ ++|+|+..++.| .++|++++.||+|.+++|.
T Consensus 200 -k~~aa~~a~~~gv~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~~~~~ 244 (252)
T 1z9d_A 200 -DATASTLSMDNDID-LVVFNMNEAGNI-QRVVFGEHIGTTVSNKVCD 244 (252)
T ss_dssp -CHHHHHHHHHTTCE-EEEEETTSTTHH-HHHHTTCCCSEEEECC---
T ss_pred -CHHHHHHHHHcCCe-EEEEeCCCchHH-HHHHcCCCCceEEecCCCC
Confidence 78899999999997 999999999985 8999999999999999986
No 32
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.96 E-value=1.6e-29 Score=249.11 Aligned_cols=211 Identities=14% Similarity=0.077 Sum_probs=160.1
Q ss_pred CCeEEEEeCCccCCCC-----ChHHHHHHHHHHHhCCCeEEEEeCChHHHHH---HHHHcCCCccccCCccCCCHHHHHH
Q 010333 99 GGTFVVIISGEIVSSP-----YLDPILKDIAFLHHLGIRFVLVPGTHVQIDK---LLSERGHEAKYLGRYRITDSESLAA 170 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~-----~l~~l~~dIA~L~~lGirvVLVHGggpqI~~---~L~~~Gi~~~~~~G~RvTd~~~L~~ 170 (513)
-|++||||||++++++ .+..++++|+.|+. |+++|||||||++++. .++++++ +..+++.
T Consensus 19 ~k~iViKlGGs~l~~~~~~~~~i~~~~~~i~~l~~-g~~vViV~GgG~~~~~~~~~~~~~gl-----------~~~~~~~ 86 (244)
T 2brx_A 19 HMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNS-----------SETFKDF 86 (244)
T ss_dssp CCEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred ccEEEEEechhhcCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECccHHHhchHHHHHHcCC-----------CcccHHH
Confidence 4799999999999953 27899999999999 9999999999999988 3555554 3456666
Q ss_pred HHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcC
Q 010333 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (513)
Q Consensus 171 a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~ 250 (513)
...+.+.++..+++. .|.++|++ + ..++.+.++++|++
T Consensus 87 ~~~~~~~~~~~l~~~--------~l~~~g~~----~------------------------------~~~~~~~i~~lL~~ 124 (244)
T 2brx_A 87 IGIQITRANAMLLIA--------ALREKAYP----V------------------------------VVEDFWEAWKAVQL 124 (244)
T ss_dssp HHHHHHHHHHHHHHH--------HHGGGBCS----S------------------------------CBCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH--------HHHHcCCC----C------------------------------CcCCHHHHHHHHhC
Confidence 544455666666542 35666643 1 02467788999999
Q ss_pred CceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhhh
Q 010333 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQS 323 (513)
Q Consensus 251 G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~~ 323 (513)
|.|||+++ |..++ |+|++|+.+|.+|+||+|+|+|||+|++ +++++|++++..|+++++....
T Consensus 125 g~IpVi~g------g~~~~-~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g--- 194 (244)
T 2brx_A 125 KKIPVMGG------THPGH-TTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGI--- 194 (244)
T ss_dssp TCBCEECC------CSTTC-CHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC-----
T ss_pred CCEEEEcC------CCCCC-CchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccC---
Confidence 99999999 44555 9999999999999999999999999972 3589999999999888763200
Q ss_pred hHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHH
Q 010333 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (513)
Q Consensus 324 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~K 403 (513)
+.+| | |..|
T Consensus 195 -------------------------------------------------~~~g-~---------------------m~~~ 203 (244)
T 2brx_A 195 -------------------------------------------------EKAG-S---------------------SSVI 203 (244)
T ss_dssp -----------------------------------------------------------------------------CCS
T ss_pred -------------------------------------------------CCCC-C---------------------Ccch
Confidence 1124 4 3333
Q ss_pred HHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEec
Q 010333 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (513)
Q Consensus 404 L~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~ 445 (513)
..+|..+++.++.+++|+|++.++.| .++|+++++||+|.+
T Consensus 204 ~~~A~~~~~~~~~~v~I~ng~~~~~l-~~~l~g~~~GT~i~~ 244 (244)
T 2brx_A 204 DPLAAKIIARSGIKTIVIGKEDAKDL-FRVIKGDHNGTTIEP 244 (244)
T ss_dssp CHHHHHHHHHHTCCEEEECHHHHTCH-HHHHTTCSSSEEECC
T ss_pred HHHHHHHHHHCCCeEEEEeCCChhHH-HHHHcCCCCceEecC
Confidence 45666666655556999999999985 889999999999964
No 33
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.96 E-value=1.2e-27 Score=233.69 Aligned_cols=217 Identities=15% Similarity=0.095 Sum_probs=163.2
Q ss_pred CCeEEEEeCCccCCCC--------ChHHHHHHHHHHHhCCCeEEEEeCChHHHHHH-HHHcCCCccccCCccCCCHHHHH
Q 010333 99 GGTFVVIISGEIVSSP--------YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKL-LSERGHEAKYLGRYRITDSESLA 169 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~--------~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~-L~~~Gi~~~~~~G~RvTd~~~L~ 169 (513)
.|++|||+||++++++ .+.+++++|+.|++.|+++|||||||+++... +++++++.+ +.+
T Consensus 7 ~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~GgG~~~~g~~~~~~~~~~~-----------~~~ 75 (239)
T 1ybd_A 7 YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRA-----------TAD 75 (239)
T ss_dssp CSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTSCHH-----------HHH
T ss_pred CCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhchhHHHcCCCCc-----------cHH
Confidence 4899999999999964 27899999999999999999999999987766 677777642 122
Q ss_pred HHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhc
Q 010333 170 AAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLD 249 (513)
Q Consensus 170 ~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd 249 (513)
......+.++..++. ..|.++|++ +..+++.+... ++ . ..++.+.+ ++|+
T Consensus 76 ~~~~~~~~~~~~l~~--------~~l~~~G~~----~~~~~~~~~~~--------~~-------~--~~~~~~~~-~ll~ 125 (239)
T 1ybd_A 76 YMGMMATVMNALALK--------DAFETLGIK----ARVQSALSMQQ--------IA-------E--TYARPKAI-QYLE 125 (239)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHTTCC----EEEEESSCBSS--------SC-------E--ECCHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHcCCC----eEEEeeecccc--------cc-------c--chhHHHHH-HHHh
Confidence 222233345555432 257888876 44554433211 11 1 12466777 8999
Q ss_pred CCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhh
Q 010333 250 GGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQ 322 (513)
Q Consensus 250 ~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~ 322 (513)
.|.|||+++ . +|. .++|+|.+|+.+|.+|+||+|+|+|||+|++ +++++|++++.+|+.++ +
T Consensus 126 ~g~ipVv~g--~--~g~-~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g--- 194 (239)
T 1ybd_A 126 EGKVVIFAA--G--TGN-PFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---N--- 194 (239)
T ss_dssp TTCEEEEES--T--TSS-TTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT---T---
T ss_pred CCcEEEEEC--C--ccC-CCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh---c---
Confidence 999999983 2 333 3589999999999999999999999999973 35679999998876542 1
Q ss_pred hhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHH
Q 010333 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 402 (513)
Q Consensus 323 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~ 402 (513)
.+ + |
T Consensus 195 ----------------------------------------------------~~-~---------------------m-- 198 (239)
T 1ybd_A 195 ----------------------------------------------------LK-V---------------------M-- 198 (239)
T ss_dssp ----------------------------------------------------CC-S---------------------S--
T ss_pred ----------------------------------------------------cc-c---------------------c--
Confidence 12 3 5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEec
Q 010333 403 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (513)
Q Consensus 403 KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~ 445 (513)
|+++|..|++.|++ +||+|+..++.| .++|+++++||+|.+
T Consensus 199 ~~~a~~~a~~~gv~-v~I~~~~~~~~l-~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 199 DATAFALCRERKLN-IVVFGIAKEGSL-KRVITGEDEGTLVHC 239 (239)
T ss_dssp CHHHHHHHHHTTCC-EEEECTTSTTHH-HHHHHTCSCSEEEEC
T ss_pred CHHHHHHHHHcCCc-EEEEeCCChhHH-HHHHcCCCCCeEEcC
Confidence 57899999999998 999999999985 689999999999964
No 34
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=99.96 E-value=8.1e-28 Score=238.45 Aligned_cols=222 Identities=11% Similarity=0.072 Sum_probs=162.2
Q ss_pred hHHHhh-cCCeEEEEeCCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHH-HHHcCCCccccCCcc
Q 010333 92 PYLWAH-RGGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKL-LSERGHEAKYLGRYR 161 (513)
Q Consensus 92 pYi~~~-rgkt~VIKlGGs~l~~~~--------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~-L~~~Gi~~~~~~G~R 161 (513)
||.... +.|++|||+||++++++. +..++++|+.|+ .|+++|||||||+++... ++++|+++.+
T Consensus 16 ~~~~~~~~~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~-~g~~vVlVhGgG~~~~~~~~~~~g~~~~~----- 89 (256)
T 2va1_A 16 PRGSHMMRKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKIS-KKYIVSIVLGGGNIWRGSIAKELDMDRNL----- 89 (256)
T ss_dssp -------CCSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHT-TTSEEEEEECCTTTCCHHHHHHTTCCHHH-----
T ss_pred chhhhhhhcCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEECCcHHhccchHHHcCCCCCc-----
Confidence 454444 358999999999999751 789999999999 999999999999987765 7788876531
Q ss_pred CCCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecH
Q 010333 162 ITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV 241 (513)
Q Consensus 162 vTd~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~ 241 (513)
...+ ...++.++..++. ..|.++|++ +..++..+ .. ++. . +.++.
T Consensus 90 ---~~~~---~~l~~~~n~~l~~--------~~l~~~Gi~----a~~~~~~t-----~~--------~~~---~-~~~~~ 134 (256)
T 2va1_A 90 ---ADNM---GMMATIINGLALE--------NALNHLNVN----TIVLSAIK-----CD--------KLV---H-ESSAN 134 (256)
T ss_dssp ---HHHH---HHHHHHHHHHHHH--------HHHHTTTCC----EEEEESSC-----CT--------TTC---E-ECCHH
T ss_pred ---hhHH---HHHHHHHHHHHHH--------HHHHHcCCC----eEEEeeee-----cc--------ccc---c-hhhHH
Confidence 1122 2334456655632 247788887 44444332 11 111 0 13566
Q ss_pred HHHHHHhcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeec-ccccC-------CCCccccccCHHHHH
Q 010333 242 TRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPILD-------ESGHLIRFLTLQEAD 313 (513)
Q Consensus 242 ~~I~~LLd~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTD-v~gld-------~~g~lI~~Lt~~Ea~ 313 (513)
+. +++|++|.|||++| .+|.. ++|+|++|+.+|.+|+||+|+|+|| |+|++ +++++|++++.+|++
T Consensus 135 ~~-~~lL~~g~IpVi~~----~~g~~-~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~ 208 (256)
T 2va1_A 135 NI-KKAIEKEQVMIFVA----GTGFP-YFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMAL 208 (256)
T ss_dssp HH-HHHHHTTCEEEEES----TTSSS-SCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHH
T ss_pred HH-HHHHhCCcEEEEEC----CCCCC-CCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHH
Confidence 66 78999999999998 23433 5789999999999999999999999 99973 348999999998876
Q ss_pred HHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccch
Q 010333 314 SLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQER 393 (513)
Q Consensus 314 ~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~ 393 (513)
++. .| +
T Consensus 209 ~~~----------------------------------------------------------~~-~--------------- 214 (256)
T 2va1_A 209 TQN----------------------------------------------------------LK-V--------------- 214 (256)
T ss_dssp HHT----------------------------------------------------------CC-S---------------
T ss_pred Hhc----------------------------------------------------------cC-C---------------
Confidence 551 12 3
Q ss_pred hccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 394 LSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 394 ~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
| |++||..|++.|++ ++|+|+..++.| .++|+++++||+|.
T Consensus 215 ------m--k~~aa~~a~~~gv~-v~I~~g~~~~~l-~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 215 ------M--DATALALCQENNIN-LLVFNIDKPNAI-VDVLEKKNKYTIVS 255 (256)
T ss_dssp ------S--CHHHHHHHHHTTCE-EEEEESSSTTHH-HHHHTTCSCEEEEE
T ss_pred ------c--cHHHHHHHHHCCCe-EEEEeCCCchHH-HHHHcCCCCeEEEe
Confidence 7 89999999999997 999999999985 69999999999996
No 35
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.95 E-value=4.2e-27 Score=231.67 Aligned_cols=219 Identities=17% Similarity=0.091 Sum_probs=163.3
Q ss_pred CCeEEEEeCCccCCCC--------ChHHHHHHHHHHHhCCCeEEEEeCChHHHHHH-HHHcCCCccccCCccCCCHHHHH
Q 010333 99 GGTFVVIISGEIVSSP--------YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKL-LSERGHEAKYLGRYRITDSESLA 169 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~--------~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~-L~~~Gi~~~~~~G~RvTd~~~L~ 169 (513)
.|++||||||++++++ .+.+++++|+.|++.|+++|||||||+++... ++++|++.+ +.+
T Consensus 8 ~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~~g~~~~-----------~~d 76 (247)
T 2a1f_A 8 YKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRV-----------VGD 76 (247)
T ss_dssp CSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHH-----------HHH
T ss_pred ccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHHcCCCCC-----------cHH
Confidence 5899999999999963 27899999999999999999999998876544 567777643 222
Q ss_pred HHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhc
Q 010333 170 AAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLD 249 (513)
Q Consensus 170 ~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd 249 (513)
......+.++..++. ..|.++|++ +..+++.+...+ +. +.++.+ ++++|+
T Consensus 77 ~~~~~~~~~~~~ll~--------~~l~~~G~~----~~~~~~~~~~~~-----------~~------~~~~~~-~~~ll~ 126 (247)
T 2a1f_A 77 HMGMLATVMNGLAMR--------DSLFRADVN----AKLMSAFQLNGI-----------CD------TYNWSE-AIKMLR 126 (247)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHTTCC----EEEEESSCCTTT-----------SE------ECCHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHcCCC----eEEecccccccc-----------cc------hhhHHH-HHHHHh
Confidence 322334455555332 247888886 455555442211 10 134555 489999
Q ss_pred CCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhh
Q 010333 250 GGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQ 322 (513)
Q Consensus 250 ~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~ 322 (513)
.|.|||+++. +|. .++|+|++|+.+|.+|+||+|+|+|||+|++ +++++|++++.+|+.++ +
T Consensus 127 ~g~ipVi~~~----~g~-~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~dP~~~p~a~~i~~i~~~e~~~~---g--- 195 (247)
T 2a1f_A 127 EKRVVIFSAG----TGN-PFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---E--- 195 (247)
T ss_dssp TTCEEEEEST----TSC-SSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHHT---T---
T ss_pred CCCEEEEeCC----cCC-CCCCcHHHHHHHHHhCCCCEEEEEeCCCcccCCCCCCCCCCeEcccCCHHHHHHc---C---
Confidence 9999999982 344 4599999999999999999999999999973 25899999998876543 1
Q ss_pred hhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHH
Q 010333 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 402 (513)
Q Consensus 323 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~ 402 (513)
.+ + |
T Consensus 196 ----------------------------------------------------~~-~---------------------m-- 199 (247)
T 2a1f_A 196 ----------------------------------------------------LK-V---------------------M-- 199 (247)
T ss_dssp ----------------------------------------------------CC-S---------------------S--
T ss_pred ----------------------------------------------------cc-c---------------------c--
Confidence 12 3 5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCC
Q 010333 403 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (513)
Q Consensus 403 KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~ 447 (513)
|++||..|++.|++ ++|+|+..++.| .++++++.+||+|....
T Consensus 200 ~~~aa~~a~~~gv~-v~I~~~~~~~~l-~~~l~g~~~GT~~~~~~ 242 (247)
T 2a1f_A 200 DLSAFTLARDHGMP-IRVFNMGKPGAL-RQVVTGTEEGTTICEGH 242 (247)
T ss_dssp CHHHHHHHHHHTCC-EEEEETTSTTHH-HHHHTCSCSSEEECCC-
T ss_pred CHHHHHHHHHcCCc-EEEEeCCCchHH-HHHHcCCCCceEEeecc
Confidence 57899999999998 999999999985 77889999999996543
No 36
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.95 E-value=3.4e-27 Score=232.83 Aligned_cols=218 Identities=18% Similarity=0.157 Sum_probs=162.3
Q ss_pred cCCeEEEEeCCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCChHH-HHHHHHHcCCCccccCCccCCCHHHH
Q 010333 98 RGGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHEAKYLGRYRITDSESL 168 (513)
Q Consensus 98 rgkt~VIKlGGs~l~~~~--------l~~l~~dIA~L~~lGirvVLVHGggpq-I~~~L~~~Gi~~~~~~G~RvTd~~~L 168 (513)
+.|++|||+||+++++++ +++++++|+.++..|+++|||||||+. .+..+.++|++.. +.+.+
T Consensus 8 ~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~~~~g~~~~--------~~d~~ 79 (243)
T 3ek6_A 8 SYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRV--------TGDHM 79 (243)
T ss_dssp SCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTTSCSSSCHH--------HHHHH
T ss_pred cCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCCCCC--------CHHHH
Confidence 468999999999999752 688999999999999999999998763 2333344444321 12222
Q ss_pred HHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHh
Q 010333 169 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL 248 (513)
Q Consensus 169 ~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LL 248 (513)
. ...+.+|..+.. .+|.++|++ +..+++.+...+ ...++.+.+.++|
T Consensus 80 g---~l~t~~N~~~l~--------~al~~~G~~----a~~~~~~~~~~v------------------~~~~~~~~~~~lL 126 (243)
T 3ek6_A 80 G---MLATVINALAMQ--------DALEKLGAK----VRVMSAIKINDV------------------CEDFIRRRAIRHL 126 (243)
T ss_dssp H---HHHHHHHHHHHH--------HHHHHTTCC----EEEEESSCBTTT------------------BEECCHHHHHHHH
T ss_pred H---HHHHHHHHHHHH--------HHHHHcCCC----eEEechhhcCcc------------------cCcCCHHHHHHHH
Confidence 2 235567766333 257888886 455554431111 1234678899999
Q ss_pred cCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhh
Q 010333 249 DGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVK 321 (513)
Q Consensus 249 d~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~ 321 (513)
++|.|||+++. +|.. ++|+|++|+.+|.+|+||+|+|+|||+|++ |++++|++++.+|+.+ .+.
T Consensus 127 ~~g~IpVv~~~----~g~~-~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~---~g~- 197 (243)
T 3ek6_A 127 EKGRIAIFAAG----TGNP-FFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIM---QGL- 197 (243)
T ss_dssp HTTCEEEEEST----TSST-TCCHHHHHHHHHHHHTCSEEEEECSSSSCBSSCGGGCTTCCBCSEECHHHHHH---HTC-
T ss_pred HCCcEEEEECC----CCCC-cCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceecccccHHHHHh---CCc-
Confidence 99999999982 3443 489999999999999999999999999973 3578999999877543 110
Q ss_pred hhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcH
Q 010333 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (513)
Q Consensus 322 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~ 401 (513)
+ . |
T Consensus 198 ------------------------------------------------------~-~---------------------~- 200 (243)
T 3ek6_A 198 ------------------------------------------------------E-V---------------------M- 200 (243)
T ss_dssp ------------------------------------------------------C-S---------------------S-
T ss_pred ------------------------------------------------------h-h---------------------H-
Confidence 1 2 3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEec
Q 010333 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (513)
Q Consensus 402 ~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~ 445 (513)
|+.||..|++.|++ +||+|++.++. |.++|+++++||+|.+
T Consensus 201 -~~~a~~~a~~~gv~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 201 -DTAAFALARDSDLP-LRIFGMSEPGV-LLRILHGAQIGTLVQG 241 (243)
T ss_dssp -CHHHHHHHHHTTCC-EEEECCCSTTH-HHHHHTTCCCSEEECC
T ss_pred -HHHHHHHHHHCCCe-EEEEcCCCccH-HHHHHCCCCCceEEee
Confidence 58899999999998 99999999998 5599999999999986
No 37
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.94 E-value=5.3e-26 Score=225.10 Aligned_cols=218 Identities=17% Similarity=0.193 Sum_probs=159.0
Q ss_pred cCCeEEEEeCCccCCCC--------ChHHHHHHHHHHHhCCCeEEEEeCChHHHHHH-HHHcCCCccccCCccCCCHHHH
Q 010333 98 RGGTFVVIISGEIVSSP--------YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKL-LSERGHEAKYLGRYRITDSESL 168 (513)
Q Consensus 98 rgkt~VIKlGGs~l~~~--------~l~~l~~dIA~L~~lGirvVLVHGggpqI~~~-L~~~Gi~~~~~~G~RvTd~~~L 168 (513)
++|++||||||++++++ .+.+++++|+.|++.|+++|||||||+++... ++++|++.. +.+.+
T Consensus 11 ~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~~~~~~~~~g~~~~--------~~~~~ 82 (255)
T 2jjx_A 11 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRV--------EADNI 82 (255)
T ss_dssp BCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHTTCCHH--------HHHHH
T ss_pred cCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHHhhhHHHHcCCCCC--------ChHHH
Confidence 57899999999999974 27899999999999999999999999886444 667777632 22333
Q ss_pred HHHHHHHhHHHHHHHHhhCCCCchhhHHh-cCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHH
Q 010333 169 AAAMEAAGGIRMMIEAKLSPGPPICNIRR-HGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRER 247 (513)
Q Consensus 169 ~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~-~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~L 247 (513)
+. ....++..+.. ..|.+ +|++ +..+++.+...+ .+ .++...+.++
T Consensus 83 ~~---~~~~~~~~ll~--------~~l~~~~Gi~----a~~l~~~~~~~v----------------~~--~~~~~~~~~l 129 (255)
T 2jjx_A 83 GT---LGTIINSLMLR--------GVLTSKTNKE----VRVMTSIPFNAV----------------AE--PYIRLRAVHH 129 (255)
T ss_dssp HH---HHHHHHHHHHH--------HHHHHHCSSC----EEEEESSCCCSS----------------SE--ECCHHHHHHH
T ss_pred hH---HHHHHHHHHHH--------HHHHhhcCCc----eEEecHHHcCcc----------------cC--cccHHHHHHH
Confidence 32 23355555332 25788 8987 455555442211 11 2344444499
Q ss_pred hcCCceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEee-cccccC-------CCCccccccCHHHHHHHHHHh
Q 010333 248 LDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICII-DGPILD-------ESGHLIRFLTLQEADSLIRQR 319 (513)
Q Consensus 248 Ld~G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLT-Dv~gld-------~~g~lI~~Lt~~Ea~~ll~~~ 319 (513)
|++|.|||++| + +|+. ++++|.+|+.+|.+|+||+|+|+| ||||++ +++++|++++.+|+.++ +
T Consensus 130 L~~g~IpVi~g-g---~g~~-~vttD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---G 201 (255)
T 2jjx_A 130 LDNGYIVIFGG-G---NGQP-FVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---N 201 (255)
T ss_dssp HHTTCEEEEES-T---TSCS-SCCSHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---T
T ss_pred HhCCcEEEEeC-C---CCCC-ccchHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc---C
Confidence 99999999998 3 4443 578999999999999999999999 999973 34899999997665432 1
Q ss_pred hhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccC
Q 010333 320 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 399 (513)
Q Consensus 320 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~ 399 (513)
+| +
T Consensus 202 -------------------------------------------------------~~-~--------------------- 204 (255)
T 2jjx_A 202 -------------------------------------------------------IQ-V--------------------- 204 (255)
T ss_dssp -------------------------------------------------------CC-S---------------------
T ss_pred -------------------------------------------------------Cc-c---------------------
Confidence 23 4
Q ss_pred cHHHHHHHHHHH-HcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecC
Q 010333 400 YLSELAAAAFVC-RRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (513)
Q Consensus 400 m~~KL~AA~~A~-~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d 446 (513)
|.+ +|..+| +.|++ ++|+|+..++.| .+++++++.||+|.++
T Consensus 205 m~~---~a~~~a~~~gi~-v~I~~~~~~~~l-~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 205 MDQ---AALLLARDYNLP-AHVFNFDEPGVM-RRICLGEHVGTLINDD 247 (255)
T ss_dssp SCH---HHHHHHHHHTCC-EEEEETTSTTHH-HHHHBTCCCSEEEESS
T ss_pred CHH---HHHHHHHHcCCe-EEEEeCCCchHH-HHHhcCCCCceEEecC
Confidence 422 344444 58998 999999999985 6677998999999875
No 38
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=99.94 E-value=4.3e-26 Score=229.73 Aligned_cols=216 Identities=16% Similarity=0.182 Sum_probs=155.0
Q ss_pred CCeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCChHHHHHH-HHHcCCCccccCCccCCCHHHHHH
Q 010333 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKL-LSERGHEAKYLGRYRITDSESLAA 170 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGggpqI~~~-L~~~Gi~~~~~~G~RvTd~~~L~~ 170 (513)
.|++|||+||++|++++ +.+++++|+.|++.|++||||||||+..... +...| .+.++...+..
T Consensus 50 ~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~~~g--------l~~~~~d~~g~ 121 (281)
T 3nwy_A 50 YSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLG--------MERTRSDYMGM 121 (281)
T ss_dssp CSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTTTTT--------CCHHHHHHHHH
T ss_pred CcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHHhcC--------CCccchhHHHH
Confidence 58999999999999642 6889999999999999999999887543321 11122 22222222322
Q ss_pred HHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcC
Q 010333 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (513)
Q Consensus 171 a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~ 250 (513)
....+|..+.+ ..|.++|++ +..++..+...++ + +.++.+.+ ++|++
T Consensus 122 ---lat~~n~~~l~--------~~L~~~Gi~----a~~~~~~~~~~~~-~----------------~~~~~~~l-~lL~~ 168 (281)
T 3nwy_A 122 ---LGTVMNSLALQ--------DFLEKEGIV----TRVQTAITMGQVA-E----------------PYLPLRAV-RHLEK 168 (281)
T ss_dssp ---HHHHHHHHHHH--------HHHHHTTCC----EEEEESSCCGGGS-E----------------ECCHHHHH-HHHHT
T ss_pred ---HHHHHHHHHHH--------HHHHHcCCC----EEEEecccccccc-c----------------ccchHHHH-HHHHc
Confidence 22344432222 358899987 3444443322221 1 23567777 79999
Q ss_pred CceEEEcCCccCCCCceeecChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhhh
Q 010333 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQS 323 (513)
Q Consensus 251 G~IPVIspvg~s~tGei~nld~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~~ 323 (513)
|.|||+++ .+|. .++|+|++|+.+|.+|+||+|||+|||+|++ +++++|++++..|+.+ .
T Consensus 169 g~IpVv~g----~~g~-~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~---~----- 235 (281)
T 3nwy_A 169 GRVVIFGA----GMGL-PYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLD---R----- 235 (281)
T ss_dssp TCEEEEES----TTSS-TTCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-----CCCCBCSEECHHHHHT---T-----
T ss_pred CCeEEEEC----CCCC-CCCCHHHHHHHHHHHcCCCEEEEeeccCccccCCCCcCCCCeEcccccHHHHHH---c-----
Confidence 99999998 2343 3589999999999999999999999999973 3578999999876411 0
Q ss_pred hHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHH
Q 010333 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (513)
Q Consensus 324 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~K 403 (513)
| + |..|
T Consensus 236 ----------------------------------------------------g-~---------------------~v~k 241 (281)
T 3nwy_A 236 ----------------------------------------------------G-L---------------------RVAD 241 (281)
T ss_dssp ----------------------------------------------------T-C---------------------CSSC
T ss_pred ----------------------------------------------------C-C---------------------CcHH
Confidence 1 2 3346
Q ss_pred HHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEe
Q 010333 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (513)
Q Consensus 404 L~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~ 444 (513)
+.||..|++.|++ ++|+|++.++. |.++|+++++||+|.
T Consensus 242 ~~Aa~~a~~~Gi~-v~I~~g~~p~~-l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 242 ATAFSLCMDNGMP-ILVFNLLTDGN-IARAVRGEKIGTLVT 280 (281)
T ss_dssp HHHHHHHHTTTCC-EEEEETTSTTH-HHHHHHTCCCSEEEC
T ss_pred HHHHHHHHHCCCe-EEEecCCCchH-HHHHHcCCCCceEEe
Confidence 8999999999997 99999999998 559999999999995
No 39
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=99.91 E-value=2.6e-23 Score=228.79 Aligned_cols=259 Identities=15% Similarity=0.156 Sum_probs=189.4
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHh
Q 010333 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAG 176 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGg-gpqI~~~L~~~Gi~~~~~~G~RvTd~~~L~~a~~a~G 176 (513)
++++|+|+||+++.+++ +.+++++|+.++..|+++|||||| |...+.++.... .+. .|+ ++..++.+ .++|
T Consensus 1 m~~iViK~GGssl~~~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~---~~~--~~~-~~~~~d~l-~s~G 73 (600)
T 3l76_A 1 MALIVQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQ---QIS--PNP-CRREMDML-LSTG 73 (600)
T ss_dssp -CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHH---HHC--SSC-CHHHHHHH-HHHH
T ss_pred CceEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHH---hhc--cCC-CHHHHHHH-HHHh
Confidence 36899999999999876 889999999999999999999999 887776665321 111 133 45666644 4678
Q ss_pred H-HHHHHHHhhCCCCchhhHHhcCCCCcceeeEeeecCCceeeeeeccccccccCcccceEEEecHHHHHHHhcCCceEE
Q 010333 177 G-IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVI 255 (513)
Q Consensus 177 ~-l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~Vd~~~I~~LLd~G~IPV 255 (513)
+ ++..+.+. .|+++|++ ++.+++.+..+++... + ..+++..++.+.|+++|+.|.|||
T Consensus 74 e~~s~~l~~~--------~l~~~G~~----a~~l~~~~~~l~~~~~--------~-~~~~~~~~~~~~i~~ll~~g~IpV 132 (600)
T 3l76_A 74 EQVSIALLSL--------ALQEIDQP----AISLTGAQVGIVTEAE--------H-SRARILEIRPDRLEHHLREGKVVV 132 (600)
T ss_dssp HHHHHHHHHH--------HHHHTTCC----EEEEEGGGTEEEEC----------------CCEEEECCHHHHHTTTCEEE
T ss_pred HHHHHHHHHH--------HHHhCCCC----eEEechhHcceEEecC--------C-CCceeccccHHHHHHHHhCCCEEE
Confidence 6 66566553 58999988 6888887766666432 1 134566778899999999999999
Q ss_pred EcC-CccCCCC--ceeec---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhh
Q 010333 256 LSN-LGYSSSG--EVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQ 322 (513)
Q Consensus 256 Isp-vg~s~tG--ei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~ 322 (513)
+++ .|++++| ++.++ ++|.+|+.+|.+|+||+|+++|||+|++ +++++|++++.+|+.++...
T Consensus 133 v~Gf~g~~~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~---- 208 (600)
T 3l76_A 133 VAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASL---- 208 (600)
T ss_dssp EECEEEC----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGG----
T ss_pred EECCeecCCCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhC----
Confidence 987 6888889 55554 5999999999999999999999999973 35899999999988876421
Q ss_pred hhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHH
Q 010333 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 402 (513)
Q Consensus 323 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~ 402 (513)
|.| + |.+
T Consensus 209 ---------------------------------------------------G~~-v---------------------m~p 215 (600)
T 3l76_A 209 ---------------------------------------------------GAK-V---------------------LHP 215 (600)
T ss_dssp ---------------------------------------------------GTT-T---------------------CCH
T ss_pred ---------------------------------------------------CCC-c---------------------cHH
Confidence 123 5 554
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCC---------c--ccccc------------cccCh
Q 010333 403 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLY---------E--GTRTA------------KVTDL 459 (513)
Q Consensus 403 KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~y---------e--~iR~A------------~~~Dv 459 (513)
+|+..|++.|++ ++|.|+.. +..||+|.++.- + .++.- ...|.
T Consensus 216 --~a~~~a~~~gip-v~I~n~~~-----------~~~GT~I~~~~~~~~~~~~~~~~~~v~gi~~~~~~~~i~i~~~~~~ 281 (600)
T 3l76_A 216 --RAVEIARNYGIP-LVVRSSWS-----------DEPGTKVVAPPVQNRSLVGLEIAKAVDGVEYDADQAKVALLRVPDR 281 (600)
T ss_dssp --HHHHHHHHHTCC-EEEEETTC-----------CSCCEEEECCCCCSCCCCCCBSSCSCCEEEEECCCEEEEEEEEECS
T ss_pred --HHHHHHHHCCCe-EEEEECCC-----------CCCCeEEecCCccccccccccccCcceEEEeeCCEEEEEEeCCCCc
Confidence 688999999999 89999753 357999987642 1 11111 23466
Q ss_pred HhHH-HhhhhhHhcCccc
Q 010333 460 SGIK-QIIQPLVESGALV 476 (513)
Q Consensus 460 ~gI~-~Li~PLe~~GiLv 476 (513)
+|+. ++.+.|++.||.|
T Consensus 282 ~g~~~~if~~La~~~I~V 299 (600)
T 3l76_A 282 PGVASKLFRDIAQQQVDI 299 (600)
T ss_dssp TTHHHHHHHHHHHTTCCC
T ss_pred ccHHHHHHHHHHHcCCCE
Confidence 7776 9999999999988
No 40
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=99.85 E-value=3.9e-20 Score=198.29 Aligned_cols=265 Identities=16% Similarity=0.166 Sum_probs=191.2
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHcC--C----Ccc-c--------------c
Q 010333 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGI-RFVLVPGTHVQIDKLLSERG--H----EAK-Y--------------L 157 (513)
Q Consensus 101 t~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGi-rvVLVHGggpqI~~~L~~~G--i----~~~-~--------------~ 157 (513)
+.|.||||+.+.+.+ ++++++-|... ..|. ++|+|.++..-++..|-.+. . .+. + .
T Consensus 2 ~~V~KFGGtSv~~~~~i~~va~ii~~~-~~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (473)
T 3c1m_A 2 TTVMKFGGTSVGSGERIRHVAKIVTKR-KKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAI 80 (473)
T ss_dssp CEEEEECTTTTSSHHHHHHHHHHHHHH-HTTCSCEEEEECCSTTHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHh-hcCCCCEEEEEcCChhhHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHH
Confidence 589999999999865 66666655444 5788 89999998644544443211 0 000 0 0
Q ss_pred CCc-------------------------------cCCCHHHHHHHHHHHhHHHHHHHHhhCCCCchhhHHhcCCCCccee
Q 010333 158 GRY-------------------------------RITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHE 206 (513)
Q Consensus 158 ~G~-------------------------------RvTd~~~L~~a~~a~G~l~~~L~a~Ls~g~~i~~L~~~Gi~~~~~a 206 (513)
+.+ +-.++..++.+...-++++..+.+. .|+++|++ +
T Consensus 81 ~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~--------~L~~~G~~----a 148 (473)
T 3c1m_A 81 EEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSG--------AIRDLGEK----S 148 (473)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH--------HHHHTTCC----E
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHH--------HHHhCCCC----e
Confidence 000 0013334555544444566666553 58899998 7
Q ss_pred eEeeecCCceeeeeeccccccccCcccceE-EEecHHHHHHHhcCCceEEEcC-CccCCCCceeec---ChHHHHHHHHH
Q 010333 207 VGVSVASGNFLAAKRKGVVDGVDYGATGEV-KKVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACAL 281 (513)
Q Consensus 207 v~l~~~dGnfvtA~p~GvidGvD~g~tG~V-r~Vd~~~I~~LLd~G~IPVIsp-vg~s~tGei~nl---d~D~vAa~lA~ 281 (513)
..+++.+.++++.. +|++ +++ ..++.+.|+.+|+.|.|||+++ +|.+++|+++++ ++|.+|+.+|.
T Consensus 149 ~~l~~~~~~i~t~~--------~~~~-~~~~~~~~~~~i~~ll~~g~ipVv~G~~g~~~~g~~~~l~rg~sD~~Aa~lA~ 219 (473)
T 3c1m_A 149 IALEGGEAGIITDN--------NFGS-ARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGY 219 (473)
T ss_dssp EEECHHHHTEEECS--------CTTS-CCEEEECHHHHHHHHHHTTCEEEEESSEEEETTSCEEECCTTTHHHHHHHHHH
T ss_pred EEEEchheeEEEcc--------CCCC-ccccHhhhHHHHHHHHhCCcEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHH
Confidence 88988887788865 3554 777 5899999999999999999986 788889999888 99999999999
Q ss_pred HcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCC
Q 010333 282 AIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQ 354 (513)
Q Consensus 282 aL~ADkLIfLTDv~gld-------~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (513)
+|+||+|+++|||||++ +++++|++++..|+.++...+
T Consensus 220 ~l~Ad~l~i~TDVdGv~~~dP~~~~~a~~i~~is~~e~~~l~~~g----------------------------------- 264 (473)
T 3c1m_A 220 GLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFG----------------------------------- 264 (473)
T ss_dssp HTTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHHHTT-----------------------------------
T ss_pred HcCCCEEEEeeCCCcceeCCCCCCCCCeEecccCHHHHHHHHhcC-----------------------------------
Confidence 99999999999999973 368999999999998885221
Q ss_pred CCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHH
Q 010333 355 NGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELF 434 (513)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELf 434 (513)
.+ + |.+| ++..|.+.|++ ++|.|+..++
T Consensus 265 --------------------~~-~---------------------m~~~--a~~~a~~~gi~-v~I~~~~~~~------- 292 (473)
T 3c1m_A 265 --------------------AK-V---------------------LHPR--TIEPAMEKGIP-ILVKNTFEPE------- 292 (473)
T ss_dssp --------------------CT-T---------------------SCGG--GHHHHHHHTCC-EEEEETTSTT-------
T ss_pred --------------------Cc-c---------------------hHHH--HHHHHHHcCCE-EEEEecCCCC-------
Confidence 22 4 5554 77788899998 9999987663
Q ss_pred cCCCCeeEEecCC--Cc-cccc--------------ccccChHhHH-HhhhhhHhcCcccc
Q 010333 435 KRDGMGTMVASDL--YE-GTRT--------------AKVTDLSGIK-QIIQPLVESGALVR 477 (513)
Q Consensus 435 t~dG~GT~I~~d~--ye-~iR~--------------A~~~Dv~gI~-~Li~PLe~~GiLv~ 477 (513)
+.||+|.++. .+ .++. ..+.+-+|+. ++.+.|++.||.|.
T Consensus 293 ---~~GT~i~~~~~~~~~~v~gIa~~~~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~ 350 (473)
T 3c1m_A 293 ---SEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVI 350 (473)
T ss_dssp ---SCCEEEESCCCCCTTSCCEEEEEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEE
T ss_pred ---CceEEEeccccccccccchhhccCCeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEE
Confidence 6899998753 11 1111 1134567887 99999999998763
No 41
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=99.76 E-value=2e-17 Score=176.42 Aligned_cols=258 Identities=17% Similarity=0.142 Sum_probs=173.2
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCcc--------------c---cCCc
Q 010333 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK--------------Y---LGRY 160 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~--------------~---~~G~ 160 (513)
+++.|.||||+.+.+.+ ++++++-|. ....++|+|+++...++..|.++..... + .+.+
T Consensus 2 m~~~V~KFGGTSv~~~e~i~~va~ii~---~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~i~~i~~~~~~i~~~l 78 (449)
T 2j0w_A 2 SEIVVSKFGGTSVADFDAMNRSADIVL---SDANVRLVVLSASAGITNLLVALAEGLEPGERFEKLDAIRNIQFAILERL 78 (449)
T ss_dssp -CCEEEEECSGGGSSHHHHHHHHHHHT---SCTTEEEEEECCCTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CccEEEEECCccCCCHHHHHHHHHHHH---hcCCCEEEEeCCCCchHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999865 555555442 2345899999987667666655432200 0 0000
Q ss_pred c-------------------------CCCHHHHHHHHHHHhHHHH-HHHHhhCCCCchhhHHhcCCCCcceeeEeeecCC
Q 010333 161 R-------------------------ITDSESLAAAMEAAGGIRM-MIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASG 214 (513)
Q Consensus 161 R-------------------------vTd~~~L~~a~~a~G~l~~-~L~a~Ls~g~~i~~L~~~Gi~~~~~av~l~~~dG 214 (513)
. -.++..++.+ .+.|+... .+.+ ..|+++|++ +..+++.+.
T Consensus 79 ~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~l-~s~Ge~~s~~l~~--------~~L~~~Gi~----a~~l~~~~~ 145 (449)
T 2j0w_A 79 RYPNVIREEIERLLENITVLAEAAALATSPALTDEL-VSHGELMSTLLFV--------EILRERDVQ----AQWFDVRKV 145 (449)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH-HHHHHHHHHHHHH--------HHHHTTSCC----EEECCGGGT
T ss_pred cccHHHHHHHHHHHHHHHHHhhhhccCcCHHHHHHH-HHHHHHHHHHHHH--------HHHHHCCCc----EEEEchHHh
Confidence 0 0123334433 46777542 2222 368899988 678877775
Q ss_pred ceeeeeeccccccccCcccceEEEec-----HHHHHHHhcCCceEEEc-CCccCCCCceeecC---hHHHHHHHHHHcCC
Q 010333 215 NFLAAKRKGVVDGVDYGATGEVKKVD-----VTRMRERLDGGCLVILS-NLGYSSSGEVLNCN---TYEVATACALAIEA 285 (513)
Q Consensus 215 nfvtA~p~GvidGvD~g~tG~Vr~Vd-----~~~I~~LLd~G~IPVIs-pvg~s~tGei~nld---~D~vAa~lA~aL~A 285 (513)
+++.. +|+. +++...+ .+.++.+++.+ |||++ ++|.+++|++++++ +|.+|+.+|.+|+|
T Consensus 146 -l~t~~--------~~~~-~~~~~~~~~~~~~~~l~~l~~~~-IpVv~Gf~g~~~~g~~ttl~rGgsD~~Aa~lA~~l~A 214 (449)
T 2j0w_A 146 -MRTND--------RFGR-AEPDIAALAELAALQLLPRLNEG-LVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHA 214 (449)
T ss_dssp -CBBCS--------CTTS-CCBCHHHHHHHHHHHTHHHHHHS-EEEEESSEEECTTSCEEECCTTHHHHHHHHHHHHTTC
T ss_pred -eeecC--------CCCC-ccccHhHhHHHHHHHHHHHhcCC-EEEEeCCeeeCCCCCEEEeCCCChHHHHHHHHHHCCC
Confidence 55433 2332 2222222 24666777655 99998 57889999999887 99999999999999
Q ss_pred CEEEEeeccccc---C----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCc
Q 010333 286 DKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKT 358 (513)
Q Consensus 286 DkLIfLTDv~gl---d----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (513)
|+|+++|||||+ | +++++|++++.+|+.++...|+
T Consensus 215 d~l~i~TDVdGv~~~DPr~~~~a~~i~~is~~e~~ela~~G~-------------------------------------- 256 (449)
T 2j0w_A 215 SRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGA-------------------------------------- 256 (449)
T ss_dssp SEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTTC--------------------------------------
T ss_pred CEEEEccccCCcCcCCCCCCCCCEEccCccHHHHHHHHhcCC--------------------------------------
Confidence 999999999997 3 3689999999999988853211
Q ss_pred ccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHH---HHHHHHHHcCCCEEEEecCCCchhhHHHHHc
Q 010333 359 FSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSEL---AAAAFVCRRGVQRVHLLDGTIGGVLLLELFK 435 (513)
Q Consensus 359 ~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL---~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft 435 (513)
|+ .++..|.+.|++ ++|.|+..++
T Consensus 257 --------------------------------------------kvlh~~a~~~a~~~gi~-v~I~~~~~p~-------- 283 (449)
T 2j0w_A 257 --------------------------------------------KVLHPATLLPAVRSDIP-VFVGSSKDPR-------- 283 (449)
T ss_dssp --------------------------------------------TTSCTTTHHHHHHHTCC-EEEEESSCTT--------
T ss_pred --------------------------------------------ccchHHHHHHHHHCCCe-EEEEECCCCC--------
Confidence 12 356668889997 9999987653
Q ss_pred CCCCeeEEecCCCc--cc--------------ccccccChHhHH-HhhhhhHhcCccc
Q 010333 436 RDGMGTMVASDLYE--GT--------------RTAKVTDLSGIK-QIIQPLVESGALV 476 (513)
Q Consensus 436 ~dG~GT~I~~d~ye--~i--------------R~A~~~Dv~gI~-~Li~PLe~~GiLv 476 (513)
+.||+|.++.-+ .+ .....-+.+|+. ++.+.|++.||.|
T Consensus 284 --~~GT~I~~~~~~~~~v~gIa~~~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~v 339 (449)
T 2j0w_A 284 --AGGTLVCNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISV 339 (449)
T ss_dssp --SCCEEEESCCSSCCSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCC
T ss_pred --CCeeEEecccccccccccceeeCCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCE
Confidence 689999876311 11 111224567777 9999999998854
No 42
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=99.75 E-value=7.8e-17 Score=174.29 Aligned_cols=266 Identities=15% Similarity=0.131 Sum_probs=178.2
Q ss_pred hcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCC--------cccc----------
Q 010333 97 HRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHE--------AKYL---------- 157 (513)
Q Consensus 97 ~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~--------~~~~---------- 157 (513)
...++.|.||||+.+.+.+ ++++++-|.. ..+.++|+|.++..-++..|-++... ..+.
T Consensus 24 ~~~~~~V~KFGGTSva~~e~i~~va~iI~~--~~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~~~~~~~~~~~~~i~~~h 101 (510)
T 2cdq_A 24 EKGITCVMKFGGSSVASAERMKEVADLILT--FPEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELH 101 (510)
T ss_dssp -CCCCEEEEECTGGGSSHHHHHHHHHHHHH--CTTCCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCHHHHHHHHHH
T ss_pred CCCCeEEEEECCcccCCHHHHHHHHHHHHh--ccCCCEEEEEcCCCCCchHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 3557899999999999865 6666665532 24678899998855455544222100 0000
Q ss_pred -------------------------CCc---cCCCHHHHHHHHHHHhHHH-HHHHHhhCCCCchhhHHhcCCCCcceeeE
Q 010333 158 -------------------------GRY---RITDSESLAAAMEAAGGIR-MMIEAKLSPGPPICNIRRHGDSSRWHEVG 208 (513)
Q Consensus 158 -------------------------~G~---RvTd~~~L~~a~~a~G~l~-~~L~a~Ls~g~~i~~L~~~Gi~~~~~av~ 208 (513)
.|. .-.++..++.+ .+.|+.. ..+.+ ..|+++|++ +..
T Consensus 102 ~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l-~s~GE~~s~~ll~--------~~L~~~Gi~----A~~ 168 (510)
T 2cdq_A 102 IRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYL-VSFGECLSTRIFA--------AYLNTIGVK----ARQ 168 (510)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH-HHHHHHHHHHHHH--------HHHHHTTCC----EEE
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHH-HHHHHHHHHHHHH--------HHHHHCCCC----EEE
Confidence 000 01123333332 3566633 23333 368999998 788
Q ss_pred eeecCCceeeeeeccccccccCcccceEEEe----cHHHHHH-HhcCCceEEEcC-CccCC-CCceeecC---hHHHHHH
Q 010333 209 VSVASGNFLAAKRKGVVDGVDYGATGEVKKV----DVTRMRE-RLDGGCLVILSN-LGYSS-SGEVLNCN---TYEVATA 278 (513)
Q Consensus 209 l~~~dGnfvtA~p~GvidGvD~g~tG~Vr~V----d~~~I~~-LLd~G~IPVIsp-vg~s~-tGei~nld---~D~vAa~ 278 (513)
+++.+.++++... |+. +++..+ ..+.+.+ +|+.|.|||+++ +|.++ +|++.+++ +|..|+.
T Consensus 169 l~~~~~~l~t~~~--------~~~-~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~~~~g~ittlgrGgsD~tAa~ 239 (510)
T 2cdq_A 169 YDAFEIGFITTDD--------FTN-GDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATT 239 (510)
T ss_dssp ECGGGTTCEECSC--------STT-CCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEETTTCCEEECCTTHHHHHHHH
T ss_pred EEhhHeeEEEecC--------CCc-cchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccCCCCCceEEeCCCChHHHHHH
Confidence 8888877777653 321 222222 2355554 779999999998 78888 99999887 9999999
Q ss_pred HHHHcCCCEEEEeeccccc---C----CCCccccccCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccc
Q 010333 279 CALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVY 351 (513)
Q Consensus 279 lA~aL~ADkLIfLTDv~gl---d----~~g~lI~~Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (513)
+|.+|+||+++++|||||+ | +++++|++++.+|+.++...|+
T Consensus 240 lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga------------------------------- 288 (510)
T 2cdq_A 240 IGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGA------------------------------- 288 (510)
T ss_dssp HHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHS-------------------------------
T ss_pred HHHHcCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCc-------------------------------
Confidence 9999999999999999997 3 3689999999999888753221
Q ss_pred cCCCCCcccccccccccCCCcccCCCCCccccccccccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHH
Q 010333 352 SSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLL 431 (513)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ 431 (513)
+ + |.+ +|+..|.+.|++ ++|.|+..+
T Consensus 289 ------------------------~-v---------------------mh~--~a~~~a~~~gIp-v~I~n~~~p----- 314 (510)
T 2cdq_A 289 ------------------------Q-V---------------------LHP--QSMRPAREGEIP-VRVKNSYNP----- 314 (510)
T ss_dssp ------------------------S-C---------------------CCH--HHHHHHHHHTCC-EEEEETTST-----
T ss_pred ------------------------c-h---------------------hHH--HHHHHHHHCCCe-EEEEccCcC-----
Confidence 2 3 444 377778899998 999998765
Q ss_pred HHHcCCCCeeEEecCCC-c----------------ccccccccChHhHH-HhhhhhHhcCccc
Q 010333 432 ELFKRDGMGTMVASDLY-E----------------GTRTAKVTDLSGIK-QIIQPLVESGALV 476 (513)
Q Consensus 432 ELft~dG~GT~I~~d~y-e----------------~iR~A~~~Dv~gI~-~Li~PLe~~GiLv 476 (513)
+..||+|.++.- + .+....+-+.+|+. ++.+.|++.||.|
T Consensus 315 -----~~~GT~I~~~~~~~~~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~v 372 (510)
T 2cdq_A 315 -----KAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISV 372 (510)
T ss_dssp -----TSCCEEEESCCCCTTCCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCE
T ss_pred -----CCCCeEEeccccccccccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcE
Confidence 357999987531 1 11222234456766 9999999999844
No 43
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=99.52 E-value=2e-14 Score=153.21 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=115.0
Q ss_pred EecHHHHHHHhcCCceEEEcC-CccCCCCceeec---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccc
Q 010333 238 KVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRF 306 (513)
Q Consensus 238 ~Vd~~~I~~LLd~G~IPVIsp-vg~s~tGei~nl---d~D~vAa~lA~aL~ADkLIfLTDv~gld-------~~g~lI~~ 306 (513)
.++.+.|+++|+.|.|||+++ +|.+++|++.++ ++|.+|+.+|.+|+||+++++|||||++ +++++|++
T Consensus 150 ~~~~~~l~~~l~~~~v~Vv~Gf~g~~~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~ 229 (446)
T 3tvi_A 150 KKSYEKIKEKVLSCNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISK 229 (446)
T ss_dssp HHHHHHHHHHTTTCSSEECCCSEEECTTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSE
T ss_pred HhhHHHHHHHHhcCCeEEeeCceecCCCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcce
Confidence 456789999999999999998 588889998887 5999999999999999999999999973 36899999
Q ss_pred cCHHHHHHHHHHhhhhhhHHHhHHhhhhcccccccCCCCCCCccccCCCCCcccccccccccCCCcccCCCCCccccccc
Q 010333 307 LTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGF 386 (513)
Q Consensus 307 Lt~~Ea~~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~G~~~~~~~~ 386 (513)
++.+|+.++...|+ + .
T Consensus 230 is~~e~~ela~~Ga-------------------------------------------------------~-v-------- 245 (446)
T 3tvi_A 230 ISYKELRELSYMGA-------------------------------------------------------T-V-------- 245 (446)
T ss_dssp EEHHHHHHTTTC--------------------------------------------------------------------
T ss_pred eCHHHHHHHHhCCC-------------------------------------------------------C-c--------
Confidence 99999887742211 1 1
Q ss_pred cccccchhccccCcHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHcCCCCeeEEecCCC--cc---cc---------
Q 010333 387 AIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLY--EG---TR--------- 452 (513)
Q Consensus 387 ~~g~~~~~~~~~~m~~KL~AA~~A~~~GV~RvhIv~g~~~gaLL~ELft~dG~GT~I~~d~y--e~---iR--------- 452 (513)
| +..|+..|.+.|++ ++|.|+..+ +..||+|.++.- +. ++
T Consensus 246 -------------l--~~~a~~~a~~~~ip-i~i~~~~~p----------~~~GT~i~~~~~~~~~~~~v~gIa~~~~~~ 299 (446)
T 3tvi_A 246 -------------L--HEEAIFPVKDSGIP-INIKNTNKP----------SDPGTLILSDTHKEINLGTITGIAGKKNFT 299 (446)
T ss_dssp -------------C--CSTTTHHHHHSSCC-EEEEETTBT----------TSCCEEEECTTTSCCCTTCCCEEEEEEEEE
T ss_pred -------------c--hHHHHHHHHHcCCe-EEEecCCCC----------CCCCEEEecCCcccccCcceEEEEecCCEE
Confidence 2 23467778899999 899997654 357899986641 11 11
Q ss_pred -----cccccChHhHH-HhhhhhHhcCcccc
Q 010333 453 -----TAKVTDLSGIK-QIIQPLVESGALVR 477 (513)
Q Consensus 453 -----~A~~~Dv~gI~-~Li~PLe~~GiLv~ 477 (513)
.....|.+|+. ++.+.|++.||.|.
T Consensus 300 ~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd 330 (446)
T 3tvi_A 300 VIAIEKALLNSEVGFCRKILSILEMYGVSFE 330 (446)
T ss_dssp EEEEECTTGGGSTTHHHHHHHHHHTTTCCEE
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHcCCcEE
Confidence 11234666766 89999999998774
No 44
>3e0k_A Amino-acid acetyltransferase; N-acetylglutamate synthase, structu genomics, PSI-2, protein structure initiative; HET: MSE; 2.52A {Vibrio parahaemolyticus}
Probab=94.04 E-value=0.037 Score=47.19 Aligned_cols=45 Identities=36% Similarity=0.465 Sum_probs=39.8
Q ss_pred CCcccccccccChHhHHHhhhhhHhcCccccCCHHHHHHHhhccc
Q 010333 447 LYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEEVRALALSDF 491 (513)
Q Consensus 447 ~ye~iR~A~~~Dv~gI~~Li~PLe~~GiLv~Rs~e~le~~i~~~~ 491 (513)
+|+.||+|+.+|++.|.+|+.++++.+...+++++.++.++..+|
T Consensus 2 ~~~~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (150)
T 3e0k_A 2 NAEQVRQAGIDDIGGILELIHPLEEQGILVRRSREQLEQEIGKFT 46 (150)
T ss_dssp -CEEEEECCGGGHHHHHHHHHHHHHTTCC-CCCHHHHHHHGGGEE
T ss_pred chheeecCCHhhHHHHHHHHHHHhhcccccccCHHHHHHHHHheE
Confidence 578999999999999999999999999999999999999995444
No 45
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=62.95 E-value=26 Score=36.11 Aligned_cols=64 Identities=14% Similarity=0.116 Sum_probs=49.9
Q ss_pred hhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCChHHH
Q 010333 80 DEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQI 143 (513)
Q Consensus 80 ~~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGggpqI 143 (513)
+..|...|+++.|-+..|+=..+||..|-.+...+- .+.+.+=...+.+.+.++|+|-+||-..
T Consensus 273 d~~yl~~~~~~l~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~~~~~v~vleGGY~~ 343 (362)
T 3men_A 273 EAAFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHI 343 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTTCCCEEEEECCCCCH
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHhhCCCEEEEECCCCCH
Confidence 577999999999999999999999999988876542 2333443345677788999999997443
No 46
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=60.66 E-value=16 Score=34.00 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=44.9
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCC----hHHHHHHHHHcCCCc
Q 010333 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT----HVQIDKLLSERGHEA 154 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGg----gpqI~~~L~~~Gi~~ 154 (513)
|.+++=+.|.++.+.. ++...+-|..|++.|++++++.|. ...+.+.++.+|+..
T Consensus 9 kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~~ 68 (268)
T 3qgm_A 9 KGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEV 68 (268)
T ss_dssp SEEEEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCCC
T ss_pred CEEEEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCCC
Confidence 7899999999987755 677888899999999999999993 345667788888753
No 47
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=60.57 E-value=33 Score=29.23 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=51.3
Q ss_pred HHHHHH-hhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCC
Q 010333 84 VKWFRE-AWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHE 153 (513)
Q Consensus 84 v~~fR~-a~pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~ 153 (513)
.+.|++ ....+..++-+.+|+-+.|-.+-|.. ...+.+-...++..|.++++ .|-.|++.+.+...|+.
T Consensus 27 a~~l~~~ll~~i~~~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l-~Gi~p~va~~l~~~G~~ 97 (123)
T 3zxn_A 27 VIQFKEELLHNITGVAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVL-TGIKPAVAITLTEMGLD 97 (123)
T ss_dssp HHHHHHHHHHHHTSSCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEE-ECCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEE-EcCCHHHHHHHHHhCCC
Confidence 444555 44677778888999999998887754 44455545556777888655 58999999999999987
No 48
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=55.81 E-value=34 Score=34.98 Aligned_cols=61 Identities=8% Similarity=0.010 Sum_probs=47.9
Q ss_pred hhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCCh
Q 010333 80 DEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTH 140 (513)
Q Consensus 80 ~~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGgg 140 (513)
+..|...|+++.|-+..|+=..+||..|-.+...+- .+.+.+=...+++.+.++|+|.+||
T Consensus 255 d~~y~~~~~~~l~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~~~~~v~vleGG 322 (341)
T 3q9b_A 255 YSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGG 322 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHTTSSCEEEEECCC
T ss_pred hHHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 577999999999999999999999999988776532 1333333344667788999999996
No 49
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=50.66 E-value=24 Score=32.82 Aligned_cols=55 Identities=11% Similarity=0.202 Sum_probs=43.0
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCC----hHHHHHHHHHcCCC
Q 010333 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT----HVQIDKLLSERGHE 153 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGg----gpqI~~~L~~~Gi~ 153 (513)
-|.|++=+.|.++.+.. ++...+-|..|++.|++++++.|. ...+.+.++.+|+.
T Consensus 6 ~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~ 65 (266)
T 3pdw_A 6 YKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65 (266)
T ss_dssp CSEEEEECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 37899999999987644 567778888899999999999882 23456677788775
No 50
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=50.41 E-value=25 Score=31.97 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=33.1
Q ss_pred CeEEEEeCCccCCCC---------C-hHHHHHHHHHHHhCCCeEEEEeCCh
Q 010333 100 GTFVVIISGEIVSSP---------Y-LDPILKDIAFLHHLGIRFVLVPGTH 140 (513)
Q Consensus 100 kt~VIKlGGs~l~~~---------~-l~~l~~dIA~L~~lGirvVLVHGgg 140 (513)
|.+++-+.|.++.+. . ++.+.+-|..|++.|++++||.++.
T Consensus 26 k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~ 76 (211)
T 2gmw_A 26 PAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQS 76 (211)
T ss_dssp CEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECT
T ss_pred CEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcC
Confidence 578888999887654 2 5667777888999999999999885
No 51
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=45.86 E-value=27 Score=28.39 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=38.5
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHcCCCc
Q 010333 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHEA 154 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGgg-pqI~~~L~~~Gi~~ 154 (513)
|.++.-+.|....... ++.+.+-+..|++.|++++++.++. ..+...++..|+..
T Consensus 3 k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~ 59 (137)
T 2pr7_A 3 RGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNG 59 (137)
T ss_dssp CEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTT
T ss_pred cEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHh
Confidence 6788888887733222 4566777778999999999999874 33556677766653
No 52
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=44.35 E-value=85 Score=27.02 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=39.5
Q ss_pred CeEEEEeCCccCCCCC-----------hHHHHHHHHHHHhCCCeEEEEeCCh----------------HHHHHHHHHcC-
Q 010333 100 GTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTH----------------VQIDKLLSERG- 151 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-----------l~~l~~dIA~L~~lGirvVLVHGgg----------------pqI~~~L~~~G- 151 (513)
|.+++-+.|.++.+.. ++...+-|..|++.|++++|+.++. ..+...++..|
T Consensus 2 k~v~~D~DGtL~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 81 (179)
T 3l8h_A 2 KLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGG 81 (179)
T ss_dssp CEEEECSBTTTBCCCTTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCCccccCCCccCCCHHHceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 4455566666654421 4667777888999999999999885 34567778888
Q ss_pred -CCccc
Q 010333 152 -HEAKY 156 (513)
Q Consensus 152 -i~~~~ 156 (513)
+..-|
T Consensus 82 ~~~~~~ 87 (179)
T 3l8h_A 82 VVDAIF 87 (179)
T ss_dssp CCCEEE
T ss_pred ceeEEE
Confidence 55433
No 53
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=42.35 E-value=1.1e+02 Score=26.98 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCh----HHHHHHHHHcCCCccc
Q 010333 116 LDPILKDIAFLHHLGIRFVLVPGTH----VQIDKLLSERGHEAKY 156 (513)
Q Consensus 116 l~~l~~dIA~L~~lGirvVLVHGgg----pqI~~~L~~~Gi~~~~ 156 (513)
++.+.+-|..|++.|++++|+.++. ..+...++..|+...|
T Consensus 36 ~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~f 80 (189)
T 3ib6_A 36 RKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYF 80 (189)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGE
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhhe
Confidence 4566777888999999999999875 5788889999987544
No 54
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=42.11 E-value=71 Score=32.97 Aligned_cols=63 Identities=8% Similarity=0.145 Sum_probs=48.8
Q ss_pred hhHHHHHHHHhh-hHHHhhcCCeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCChHH
Q 010333 80 DEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQ 142 (513)
Q Consensus 80 ~~~fv~~fR~a~-pYi~~~rgkt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGggpq 142 (513)
+..|...|++.+ |-+..|+=..+|+..|-.+...+. .+.+.+-...+++.+.++|+|.|||-.
T Consensus 229 D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~ 299 (376)
T 4a69_A 229 DQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYT 299 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 677999999866 578999999999999998887643 233444445577789999999999744
No 55
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=40.27 E-value=72 Score=32.87 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=48.9
Q ss_pred hhHHHHHHHHhh-hHHHhhcCCeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCChHH
Q 010333 80 DEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQ 142 (513)
Q Consensus 80 ~~~fv~~fR~a~-pYi~~~rgkt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGggpq 142 (513)
+..|...|++.+ |-+..|+=..+||..|-.+...+. .+...+-...+++.+.++|+|.|||-.
T Consensus 228 d~~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~~~~p~v~~~eGGY~ 298 (367)
T 3max_A 228 DESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYT 298 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTTCCCEEEECCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 677999999875 689999999999999998887643 233444444567789999999999744
No 56
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=39.98 E-value=80 Score=26.48 Aligned_cols=68 Identities=12% Similarity=0.190 Sum_probs=45.4
Q ss_pred HHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCc
Q 010333 85 KWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA 154 (513)
Q Consensus 85 ~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~ 154 (513)
..|++....+ ....+.+|+-+.+-..-|.. +..+.+-...+++.|.+++++ |-.+++.+.++..|+..
T Consensus 36 ~~~~~~l~~~-~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~-~~~~~v~~~l~~~gl~~ 104 (130)
T 4dgh_A 36 ETFERVMGSI-QETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLIS-GANSRVSQKLVKAGIVK 104 (130)
T ss_dssp HHHHHHHHHS-SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEE-CCCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHh-ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEE-cCCHHHHHHHHHcCChh
Confidence 3444443323 12357888888876665543 555666556688899987766 66788999999888753
No 57
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=38.28 E-value=45 Score=29.58 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=40.8
Q ss_pred CCeEEEEeCCccCCCCC------hHHHHHHHHHHHhCCCeEEEEeCCh----HHHHHHHHHcCCCc
Q 010333 99 GGTFVVIISGEIVSSPY------LDPILKDIAFLHHLGIRFVLVPGTH----VQIDKLLSERGHEA 154 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~------l~~l~~dIA~L~~lGirvVLVHGgg----pqI~~~L~~~Gi~~ 154 (513)
.|.+++=+.|.++.+.. .+...+-|..|++.|+++||+.|=. ..+-.+++++|++.
T Consensus 3 ~k~i~~DlDGTL~~~~~~~i~~~~~~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~ 68 (142)
T 2obb_A 3 AMTIAVDFDGTIVEHRYPRIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEF 68 (142)
T ss_dssp CCEEEECCBTTTBCSCTTSCCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCC
T ss_pred CeEEEEECcCCCCCCCCccccccCHHHHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCe
Confidence 46788889999887541 3567888888999999999998742 34555566666653
No 58
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=37.33 E-value=26 Score=37.17 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=40.6
Q ss_pred HHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHH-HHhCCCeEEEEeCChH
Q 010333 83 FVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAF-LHHLGIRFVLVPGTHV 141 (513)
Q Consensus 83 fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~l~~l~~dIA~-L~~lGirvVLVHGggp 141 (513)
--+.+|.| .-++.++.+.+|+-+|++.. ++.....+.+++. |...|+ .||.|||+
T Consensus 131 vf~~Lrna-~~~~p~r~~~IvV~cGSs~~-~p~yye~A~eLGr~LA~~G~--~LVtGGG~ 186 (462)
T 3gh1_A 131 VFGILRNA-GALIPGATPNLVVCWGGHSI-NEVEYQYTREVGHELGLREL--NICTGCGP 186 (462)
T ss_dssp HHHHHHHT-TCCCTTCCSCEEEEECCSSC-CHHHHHHHHHHHHHHHHTTC--EEEECCSS
T ss_pred HHHHHhhc-cccCCCCCCCEEEEECCCCC-CHHHHHHHHHHHHHHHHCCC--EEEeCCcH
Confidence 34456665 55666788999999999985 5556777888876 566776 68899974
No 59
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=36.77 E-value=88 Score=32.10 Aligned_cols=61 Identities=13% Similarity=0.048 Sum_probs=47.0
Q ss_pred hhHHHHHHHH-hhhHHHhhcCCeEEEEeCCccCCCCC----------hHHHHHHHHHHHh--CCCeEEEEeCCh
Q 010333 80 DEQFVKWFRE-AWPYLWAHRGGTFVVIISGEIVSSPY----------LDPILKDIAFLHH--LGIRFVLVPGTH 140 (513)
Q Consensus 80 ~~~fv~~fR~-a~pYi~~~rgkt~VIKlGGs~l~~~~----------l~~l~~dIA~L~~--lGirvVLVHGgg 140 (513)
+..|...|++ ..|-+..|+=..+||-.|-.+...+- +..+.+.|..+.. .+.++|+|.|||
T Consensus 238 d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGG 311 (369)
T 1zz1_A 238 NAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGG 311 (369)
T ss_dssp HHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 6779999998 78999999999999999988887642 3444455544432 477999999996
No 60
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=33.91 E-value=47 Score=29.40 Aligned_cols=40 Identities=15% Similarity=0.345 Sum_probs=30.8
Q ss_pred CeEEEEeCCccCCCC----------C---hHHHHHHHHHHHhCCCeEEEEeCC
Q 010333 100 GTFVVIISGEIVSSP----------Y---LDPILKDIAFLHHLGIRFVLVPGT 139 (513)
Q Consensus 100 kt~VIKlGGs~l~~~----------~---l~~l~~dIA~L~~lGirvVLVHGg 139 (513)
|.+++-+.|.++.++ . ++.+.+-|..|++.|++++|+.++
T Consensus 15 k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~l~i~Tn~ 67 (176)
T 2fpr_A 15 KYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQ 67 (176)
T ss_dssp EEEEECSBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEEC
T ss_pred cEEEEeCCCCeEcCCCCCcCcCCHHHCcCCccHHHHHHHHHHCCCEEEEEECC
Confidence 567777888777652 1 456777788899999999999987
No 61
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=33.06 E-value=1.4e+02 Score=25.16 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=43.8
Q ss_pred CCeEEEEeCCccCCCCC------------hHHHHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHcCCCccc
Q 010333 99 GGTFVVIISGEIVSSPY------------LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKY 156 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~------------l~~l~~dIA~L~~lGirvVLVHGg-gpqI~~~L~~~Gi~~~~ 156 (513)
-|.++.-+.|.++.+.. .....+-|..|++.|++++||.|. ...+...++.+|+..-|
T Consensus 9 ~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~ 79 (162)
T 2p9j_A 9 LKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSAPLITRLKELGVEEIY 79 (162)
T ss_dssp CCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEE
T ss_pred eeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhc
Confidence 37899999999886421 133456677788999999999998 45677888899987544
No 62
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=31.74 E-value=52 Score=28.99 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHHHHHcCCCccc
Q 010333 116 LDPILKDIAFLHHLGIRFVLVPGTH--VQIDKLLSERGHEAKY 156 (513)
Q Consensus 116 l~~l~~dIA~L~~lGirvVLVHGgg--pqI~~~L~~~Gi~~~~ 156 (513)
++.+.+-|..|++.|++++|+.++. ..+...++.+|+...|
T Consensus 70 ~~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~~gl~~~f 112 (187)
T 2wm8_A 70 YPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYF 112 (187)
T ss_dssp CTTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTTCTTTE
T ss_pred chhHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHHcCcHhhc
Confidence 4566777777888999999999885 5678888999987544
No 63
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=31.49 E-value=52 Score=29.81 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=30.8
Q ss_pred CeEEEEeCCccCCC---------CC-hHHHHHHHHHHHhCCCeEEEEeCChH
Q 010333 100 GTFVVIISGEIVSS---------PY-LDPILKDIAFLHHLGIRFVLVPGTHV 141 (513)
Q Consensus 100 kt~VIKlGGs~l~~---------~~-l~~l~~dIA~L~~lGirvVLVHGggp 141 (513)
+.+++-+.|.++.. .. ++...+-|..|++.|++++||.++..
T Consensus 32 k~i~~D~DGtl~~~~~y~~~~~~~~~~~g~~e~L~~L~~~G~~~~i~Tn~~~ 83 (218)
T 2o2x_A 32 PALFLDRDGTINVDTDYPSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQSG 83 (218)
T ss_dssp CCEEECSBTTTBCCCSCTTCGGGCCBCGGGHHHHHHHHHHTCCEEEEEECHH
T ss_pred CEEEEeCCCCcCCCCcccCCcccCeECcCHHHHHHHHHHCCCEEEEEcCcCC
Confidence 55666777766654 12 56677778889999999999998853
No 64
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=30.70 E-value=1.5e+02 Score=25.03 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=42.1
Q ss_pred cCCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCcc
Q 010333 98 RGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK 155 (513)
Q Consensus 98 rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~ 155 (513)
.-+.+||-+.+-..-|.. +..+..-...++..|.+++++ |-.+++.+.|+..|+...
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~-~~~~~v~~~l~~~gl~~~ 120 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLA-GCSAQVVNDLTSNRFFEN 120 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEE-SCCHHHHHHHHHTTTTSS
T ss_pred CceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEE-eCCHHHHHHHHhCCCeec
Confidence 446789888876655533 566666566688899998876 566789999999998753
No 65
>4h89_A GCN5-related N-acetyltransferase; N-acyltransferase superfamily, structural genomics, PSI-BIOL midwest center for structural genomics, MCSG; 1.37A {Kribbella flavida}
Probab=30.59 E-value=15 Score=31.80 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.4
Q ss_pred ccccccccChHhHHHhhhhhHhcCc
Q 010333 450 GTRTAKVTDLSGIKQIIQPLVESGA 474 (513)
Q Consensus 450 ~iR~A~~~Dv~gI~~Li~PLe~~Gi 474 (513)
.||+|+.+|++.|.+|.+...+.+.
T Consensus 10 ~IR~a~~~D~~~i~~l~~~~~~~~~ 34 (173)
T 4h89_A 10 QVRDAEDADWPAILPFFREIVSAGE 34 (173)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHCS
T ss_pred EEEECCHHHHHHHHHHHHHHHHhcc
Confidence 6999999999999999887666654
No 66
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=30.22 E-value=51 Score=30.70 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=42.6
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeC--ChH--HHHHHHHHcCCC
Q 010333 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPG--THV--QIDKLLSERGHE 153 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHG--ggp--qI~~~L~~~Gi~ 153 (513)
|.|++=+.|.++.+.. ++...+-|..|++.|+++|++.| +++ .+...++.+|+.
T Consensus 6 kli~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~ 64 (264)
T 3epr_A 6 KGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVE 64 (264)
T ss_dssp CEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCC
T ss_pred CEEEEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 7888999999887655 77788888999999999999996 433 455667777765
No 67
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=29.45 E-value=1.4e+02 Score=24.94 Aligned_cols=41 Identities=15% Similarity=0.336 Sum_probs=31.9
Q ss_pred CeEEEEeCCccCCCCC-------h-HHHHHHHHHHHhCCCeEEEEeCCh
Q 010333 100 GTFVVIISGEIVSSPY-------L-DPILKDIAFLHHLGIRFVLVPGTH 140 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-------l-~~l~~dIA~L~~lGirvVLVHGgg 140 (513)
|.++.=+.|.++.+.. + +...+.|..|++.|++++++.|-.
T Consensus 2 k~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~l~~l~~~Gi~~~iaTGR~ 50 (126)
T 1xpj_A 2 KKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARN 50 (126)
T ss_dssp CEEEECSTTTTBCCCCSCGGGCCBCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CEEEEecCCCCCCCCCCccccCCCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5677788888886532 2 567788888999999999999764
No 68
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=28.32 E-value=1.3e+02 Score=27.29 Aligned_cols=54 Identities=24% Similarity=0.291 Sum_probs=39.1
Q ss_pred CeEEEEeCCccCCCCC-h-HHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHcCCC
Q 010333 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHE 153 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l-~~l~~dIA~L~~lGirvVLVHGggp-qI~~~L~~~Gi~ 153 (513)
|.++.=+.|.++.+.. + +...+-|..|++.|++++++.|-.+ .+...++..|++
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~v~i~TGR~~~~~~~~~~~l~~~ 60 (231)
T 1wr8_A 4 KAISIDIDGTITYPNRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTS 60 (231)
T ss_dssp CEEEEESTTTTBCTTSCBCHHHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHcCCC
Confidence 6788999999998654 3 6667778888899999999988643 334444555543
No 69
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=27.98 E-value=1.7e+02 Score=24.38 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=41.3
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCcc
Q 010333 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK 155 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~ 155 (513)
.+.+|+-+.+-..-|.. +..+.+-...+++.|.+++|+ |-.+++.+.++..|+...
T Consensus 48 ~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~-~~~~~v~~~l~~~gl~~~ 104 (130)
T 2kln_A 48 VEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMA-RVKQDLRESLRAASLLDK 104 (130)
T ss_dssp CEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEE-CCSSHHHHHHHHCTTHHH
T ss_pred ceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEE-cCCHHHHHHHHHcCChhh
Confidence 46789988876655544 666666666688889887766 556789999999887643
No 70
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=27.64 E-value=83 Score=29.02 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=40.7
Q ss_pred CeEEEEeCCccCCCCC-h-HHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHcCCC
Q 010333 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHE 153 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l-~~l~~dIA~L~~lGirvVLVHGggp-qI~~~L~~~Gi~ 153 (513)
|.++.-+.|.++.+.. + +...+-|..|++.|++++++.|-.+ .+...++.+++.
T Consensus 6 kli~~DlDGTLl~~~~~i~~~~~~~l~~l~~~g~~~~i~TGr~~~~~~~~~~~l~~~ 62 (227)
T 1l6r_A 6 RLAAIDVDGNLTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGIN 62 (227)
T ss_dssp CEEEEEHHHHSBCTTSCBCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCC
T ss_pred EEEEEECCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCcHHHHHHHHHhCCC
Confidence 6788889999987644 4 5667778889999999999998743 345566666665
No 71
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=26.74 E-value=1.2e+02 Score=25.98 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=38.4
Q ss_pred hcCCeEEEEeCCccCCCCChHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHcCCCc
Q 010333 97 HRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHEA 154 (513)
Q Consensus 97 ~rgkt~VIKlGGs~l~~~~l~~l~~dIA~L~~lGirvVLVHGgg-pqI~~~L~~~Gi~~ 154 (513)
|++..+||-++.-. ...++..+. ..|.+.|..+|=|-|+. .+..+.....|++.
T Consensus 45 F~~aPVVlDl~~l~-~~~dl~~L~---~~l~~~gl~~vGV~g~~~~~~~~~a~~~GLp~ 99 (120)
T 3ghf_A 45 LKHAPVVINVSGLE-SPVNWPELH---KIVTSTGLRIIGVSGCKDASLKVEIDRMGLPL 99 (120)
T ss_dssp HTTCEEEEEEEECC-SSCCHHHHH---HHHHTTTCEEEEEESCCCHHHHHHHHHHTCCE
T ss_pred hCCCcEEEEccccC-ChHHHHHHH---HHHHHcCCEEEEEeCCCcHHHHHHHHHCCCCc
Confidence 78999999997443 233355544 45778999999888876 33666777788864
No 72
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=26.42 E-value=98 Score=29.24 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=40.1
Q ss_pred CeEEEEeCCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHcCCC
Q 010333 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHE 153 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~--l~~l~~dIA~L~~lGirvVLVHGggp-qI~~~L~~~Gi~ 153 (513)
|.++.=+.|.++.+.. .+...+-|..|++.|++++++.|-.. .+...++.+++.
T Consensus 10 ~li~~DlDGTLl~~~~~~~~~~~~~l~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 66 (275)
T 1xvi_A 10 LLVFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQKTLGLQ 66 (275)
T ss_dssp EEEEEECTTTTSCSSCCSCCTTHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHTTCT
T ss_pred eEEEEeCCCCCCCCCCcCCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 6788999999998533 35567778888899999999998643 345566666654
No 73
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=25.80 E-value=1.3e+02 Score=25.60 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=28.4
Q ss_pred HHHHHhCCCeEEEEeCCh-HHHHHHHHHcCCCcccc
Q 010333 123 IAFLHHLGIRFVLVPGTH-VQIDKLLSERGHEAKYL 157 (513)
Q Consensus 123 IA~L~~lGirvVLVHGgg-pqI~~~L~~~Gi~~~~~ 157 (513)
|..|++.|++++++.|.. ..+...++++|+..-|.
T Consensus 40 l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~ 75 (164)
T 3e8m_A 40 IFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQ 75 (164)
T ss_dssp HHHHHHTTCCEEEECSSCCHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEeec
Confidence 666888999999999985 56778889999986553
No 74
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=25.43 E-value=55 Score=34.82 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=35.6
Q ss_pred HHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHH-HHhCCCeEEEEeCChH
Q 010333 85 KWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAF-LHHLGIRFVLVPGTHV 141 (513)
Q Consensus 85 ~~fR~a~pYi~~~rgkt~VIKlGGs~l~~~~l~~l~~dIA~-L~~lGirvVLVHGggp 141 (513)
+++|++- -+..++.+.+|+-+||+...++ ....+.++.. |...| +.||.|||+
T Consensus 131 ~~lrna~-~f~p~~~~~ivVv~GSs~~~~~-~Ye~A~eLGr~LA~~G--~~LVtGGG~ 184 (460)
T 3bq9_A 131 DILRNAR-TLRPQEEPNMVVCWGGHSINEI-EYKYTKDVGYHIGLRG--LNICTGCGP 184 (460)
T ss_dssp HHHHHTT-CCCTTCCSCEEEEECCSSCCHH-HHHHHHHHHHHHHHTT--CEEEECCSS
T ss_pred Hhhhccc-cccCCCCCCEEEEEcCCCCCCH-HHHHHHHHHHHHHHCC--CEEEeCCcH
Confidence 4556542 2233467778999999987554 3367777776 55566 488999975
No 75
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=25.14 E-value=96 Score=29.71 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=47.1
Q ss_pred HHHHHHHhhhHHHhh------cCCeEEEEeCCccCCCC-------------------------C--hHHHHHHHHHHHhC
Q 010333 83 FVKWFREAWPYLWAH------RGGTFVVIISGEIVSSP-------------------------Y--LDPILKDIAFLHHL 129 (513)
Q Consensus 83 fv~~fR~a~pYi~~~------rgkt~VIKlGGs~l~~~-------------------------~--l~~l~~dIA~L~~l 129 (513)
..+.+..|..|+..- .-+.||.=+.|.++.+. . ++...+-|..|++.
T Consensus 37 ~~q~y~~a~~~~~~~~~~~~~~~kavifDlDGTLld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~ 116 (258)
T 2i33_A 37 YYQGYNTGQLKLDAALAKGTEKKPAIVLDLDETVLDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESK 116 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSEEEEEECSBTTTEECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCEEEEeCcccCcCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHC
Confidence 344455555665532 22467888889888762 1 45566677789999
Q ss_pred CCeEEEEeCCh----HHHHHHHHHcCCC
Q 010333 130 GIRFVLVPGTH----VQIDKLLSERGHE 153 (513)
Q Consensus 130 GirvVLVHGgg----pqI~~~L~~~Gi~ 153 (513)
|++++||.|.. ..+...|+..|+.
T Consensus 117 Gi~i~iaTnr~~~~~~~~~~~L~~~Gl~ 144 (258)
T 2i33_A 117 GVDIYYISNRKTNQLDATIKNLERVGAP 144 (258)
T ss_dssp TCEEEEEEEEEGGGHHHHHHHHHHHTCS
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHcCCC
Confidence 99999999874 2355566777765
No 76
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=23.95 E-value=1.2e+02 Score=26.56 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=26.5
Q ss_pred HHHHHHhCCCeEEEEeCC-hHHHHHHHHHcCCC
Q 010333 122 DIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHE 153 (513)
Q Consensus 122 dIA~L~~lGirvVLVHGg-gpqI~~~L~~~Gi~ 153 (513)
-|..|++.|++++|+.|. ...+...++.+|+.
T Consensus 47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~ 79 (176)
T 3mmz_A 47 GIAALRKSGLTMLILSTEQNPVVAARARKLKIP 79 (176)
T ss_dssp HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe
Confidence 366788999999999987 45677888999998
No 77
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=23.94 E-value=1.4e+02 Score=27.99 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=42.2
Q ss_pred cCCeEEEEeCCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHcCCC
Q 010333 98 RGGTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHE 153 (513)
Q Consensus 98 rgkt~VIKlGGs~l~~~~--l~~l~~dIA~L~~lGirvVLVHGgg-pqI~~~L~~~Gi~ 153 (513)
+-|.++.=+.|.++.+.. -+...+-|..|++.|++++++.|-. +.+...++.++++
T Consensus 20 ~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~v~iaTGR~~~~~~~~~~~l~~~ 78 (285)
T 3pgv_A 20 MYQVVASDLDGTLLSPDHFLTPYAKETLKLLTARGINFVFATGRHYIDVGQIRDNLGIR 78 (285)
T ss_dssp -CCEEEEECCCCCSCTTSCCCHHHHHHHHHHHTTTCEEEEECSSCGGGGHHHHHHHCSC
T ss_pred cceEEEEeCcCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCCC
Confidence 447899999999998654 3567777888999999999998753 2455566677765
No 78
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=23.89 E-value=1.7e+02 Score=25.58 Aligned_cols=57 Identities=11% Similarity=0.174 Sum_probs=43.3
Q ss_pred CeEEEEeCCccCCCCC-----------h-HHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHcCCCccc
Q 010333 100 GTFVVIISGEIVSSPY-----------L-DPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHEAKY 156 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-----------l-~~l~~dIA~L~~lGirvVLVHGgg-pqI~~~L~~~Gi~~~~ 156 (513)
|.++.-+.|.++.+.. + ....+-|..|++.|++++++.|.. ..+...++.+|+..-|
T Consensus 9 k~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~ 78 (180)
T 1k1e_A 9 KFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFF 78 (180)
T ss_dssp CEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEE
T ss_pred eEEEEeCCCCcCCCCeeeccCcceeeeeccchHHHHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceee
Confidence 7899999999887521 1 234566777899999999999984 4577788899987644
No 79
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=23.14 E-value=2.4e+02 Score=29.24 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=46.9
Q ss_pred hhHHHHHHHHhh-hHHHhhcCCeEEEEeCCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCChH
Q 010333 80 DEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHV 141 (513)
Q Consensus 80 ~~~fv~~fR~a~-pYi~~~rgkt~VIKlGGs~l~~~~-------l~~l~~dIA~L~~lGirvVLVHGggp 141 (513)
+..|...|++.+ |-+..|+=..+||..|-.+...+. .+.+.+-...+.+.+.++++|-|||-
T Consensus 237 d~~y~~~~~~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~~~p~l~~~gGGY 306 (388)
T 3ew8_A 237 DEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGY 306 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 677999999876 677999999999999988887543 23444444556677889888888764
No 80
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=22.01 E-value=1.4e+02 Score=26.50 Aligned_cols=38 Identities=13% Similarity=-0.007 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHcCCC
Q 010333 116 LDPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHE 153 (513)
Q Consensus 116 l~~l~~dIA~L~~lGirvVLVHGgg-pqI~~~L~~~Gi~ 153 (513)
++.+.+-|..|++.|++++||.++. ..+...++.+|+.
T Consensus 94 ~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~ 132 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQ 132 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 4456666777888999999999874 4566777777775
No 81
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=21.41 E-value=1e+02 Score=29.13 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=38.4
Q ss_pred CeEEEEeCCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHcCC
Q 010333 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGH 152 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~--l~~l~~dIA~L~~lGirvVLVHGggp-qI~~~L~~~Gi 152 (513)
|.++.=+.|.++.+.. -+...+-|..|++.|++++++.|-.. .+...++.+++
T Consensus 6 kli~~DlDGTLl~~~~~i~~~~~~aL~~l~~~Gi~vviaTGR~~~~~~~~~~~l~l 61 (282)
T 1rkq_A 6 KLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHM 61 (282)
T ss_dssp CEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSCGGGTHHHHHHTTC
T ss_pred eEEEEeCCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 6788899999997654 35677778889999999999987532 23344455544
No 82
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=21.21 E-value=2.4e+02 Score=26.56 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=34.8
Q ss_pred hHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCC-CChHHHHHHHHH-HHhCCCeEEEEeCChHHH
Q 010333 81 EQFVKWFREAWPYLWAHRGGTFVVIISGEIVSS-PYLDPILKDIAF-LHHLGIRFVLVPGTHVQI 143 (513)
Q Consensus 81 ~~fv~~fR~a~pYi~~~rgkt~VIKlGGs~l~~-~~l~~l~~dIA~-L~~lGirvVLVHGggpqI 143 (513)
.+|++.|+.-.+ ++ ++.|--+||+.... +.....+++++. |.+.| +.||.||++-+
T Consensus 23 ~e~~~~~~~l~~----~~-~~~VaV~Gss~~~~~~~~~~~A~~lg~~La~~g--~~lVsGGg~Gi 80 (217)
T 1wek_A 23 AEFVEGFETLSE----LQ-VPLVSVFGSARFGEGHPAYEAGYRLGRALAEAG--FGVVTGGGPGV 80 (217)
T ss_dssp HHHHHHHHHHHH----CC-SCEEEEECCSSCCTTSHHHHHHHHHHHHHHHHT--CEEEECSCSHH
T ss_pred HHHHHHHHHHhh----cC-CCEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCC--CEEEeCChhhH
Confidence 446666665432 22 34566677777764 346677777876 55566 58899997544
No 83
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A
Probab=21.15 E-value=99 Score=28.67 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=38.4
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHcCCC
Q 010333 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHE 153 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGgg-pqI~~~L~~~Gi~ 153 (513)
|.++.=+.|.++ +.. +....+-|..|++.|++++++.|-. +.+...++.+++.
T Consensus 3 kli~~DlDGTLl-~~~~~~~~~~~l~~l~~~g~~~~i~Tgr~~~~~~~~~~~~~~~ 57 (249)
T 2zos_A 3 RLIFLDIDKTLI-PGYEPDPAKPIIEELKDMGFEIIFNSSKTRAEQEYYRKELEVE 57 (249)
T ss_dssp EEEEECCSTTTC-TTSCSGGGHHHHHHHHHTTEEEEEBCSSCHHHHHHHHHHHTCC
T ss_pred cEEEEeCCCCcc-CCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 567888899998 433 5557777888999999999998864 3445556666654
No 84
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=21.15 E-value=45 Score=28.58 Aligned_cols=51 Identities=6% Similarity=0.152 Sum_probs=32.9
Q ss_pred cccccccccChHhHHHhhhhhHhcCccccCCHHHHHHHhhccchhHHHHHH
Q 010333 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEEVRALALSDFCLNLIILS 499 (513)
Q Consensus 449 e~iR~A~~~Dv~gI~~Li~PLe~~GiLv~Rs~e~le~~i~~~~~~~~~~~~ 499 (513)
+.|-...--+...|.++|+=|+++|.+.++.+..-...+.+.|.|+-++--
T Consensus 55 ~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~~k 105 (128)
T 2vn2_A 55 AELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWEK 105 (128)
T ss_dssp HHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHHHH
Confidence 455555566778999999999999999998887666777788999866543
No 85
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=20.89 E-value=2.4e+02 Score=23.40 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=41.5
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccc
Q 010333 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKY 156 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~ 156 (513)
.+.+||-+.+-..-|.. +..+..-...+...|.+++++ |..+++.+.++..|+...+
T Consensus 52 ~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~-~~~~~v~~~l~~~gl~~~~ 109 (125)
T 2ka5_A 52 YNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALV-SPNEKVERVLSLTNLDRIV 109 (125)
T ss_dssp CCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEE-CCCHHHHHHHHHTTSTTTS
T ss_pred CCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHHHHcCCCceE
Confidence 46788888776665543 555555555577789887776 6778999999999987543
No 86
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=20.75 E-value=2e+02 Score=26.99 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=39.0
Q ss_pred CeEEEEeCCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHcCCC
Q 010333 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHE 153 (513)
Q Consensus 100 kt~VIKlGGs~l~~~~--l~~l~~dIA~L~~lGirvVLVHGggp-qI~~~L~~~Gi~ 153 (513)
|.++.=+.|.++.+.. -+...+-|..|++.|++++++.|-.. .+...++.+++.
T Consensus 5 kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 61 (288)
T 1nrw_A 5 KLIAIDLDGTLLNSKHQVSLENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGIK 61 (288)
T ss_dssp CEEEEECCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGTCC
T ss_pred EEEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 6789999999998654 35666777788899999999887643 344445555554
No 87
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=20.71 E-value=1.2e+02 Score=28.25 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=42.8
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeC--C--hHHHHHHHHHcCCC
Q 010333 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPG--T--HVQIDKLLSERGHE 153 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~lGirvVLVHG--g--gpqI~~~L~~~Gi~ 153 (513)
-|.++.=+.|.++.... ++...+-|..|++.|++++++.+ + ...+.+.++.+|+.
T Consensus 14 ~k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg~~ 73 (284)
T 2hx1_A 14 YKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLF 73 (284)
T ss_dssp CSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCT
T ss_pred CCEEEEcCcCCcCcCCeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCCcC
Confidence 37899999999887644 56677778889999999999996 2 34566777888776
No 88
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}
Probab=20.70 E-value=88 Score=27.87 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccc
Q 010333 117 DPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKY 156 (513)
Q Consensus 117 ~~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~ 156 (513)
+.+.+-+..|++.|++++||.++...+...++..|+...|
T Consensus 98 ~~~~~~l~~l~~~g~~~~i~Tn~~~~~~~~l~~~gl~~~f 137 (220)
T 2zg6_A 98 DDTLEFLEGLKSNGYKLALVSNASPRVKTLLEKFDLKKYF 137 (220)
T ss_dssp TTHHHHHHHHHTTTCEEEECCSCHHHHHHHHHHHTCGGGC
T ss_pred cCHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhcCcHhHe
Confidence 3455666678889999999999876777788888887544
No 89
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=20.35 E-value=1.1e+02 Score=25.17 Aligned_cols=72 Identities=7% Similarity=0.078 Sum_probs=48.8
Q ss_pred HHHHHHhh-hHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHcCCCccc
Q 010333 84 VKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHH-LGIRFVLVPGTHVQIDKLLSERGHEAKY 156 (513)
Q Consensus 84 v~~fR~a~-pYi~~~rgkt~VIKlGGs~l~~~~-l~~l~~dIA~L~~-lGirvVLVHGggpqI~~~L~~~Gi~~~~ 156 (513)
+..|++.. ..+.....+.+|+-+.+-..-|.. +..++.-...++. .|.+++++ |..+++.+.++..|+...+
T Consensus 32 ~~~l~~~l~~~l~~~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~~g~~l~l~-~~~~~v~~~l~~~gl~~~~ 106 (121)
T 3t6o_A 32 VEQIASTFLAAMQGAQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQQGVFALC-SVSPYCVEVLQVTHIDEVW 106 (121)
T ss_dssp HHHHHHHHHHTTCCSSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTSTTCEEEEE-SCCHHHHHHHTTCSGGGGS
T ss_pred HHHHHHHHHHHHhhcCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHHHHhCcccee
Confidence 44565543 334333457899999886665543 5566665566777 89887776 6778999999988887544
No 90
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}
Probab=20.34 E-value=2.3e+02 Score=25.98 Aligned_cols=39 Identities=10% Similarity=0.251 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHcCCCccc
Q 010333 118 PILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKY 156 (513)
Q Consensus 118 ~l~~dIA~L~~lGirvVLVHGggpqI~~~L~~~Gi~~~~ 156 (513)
.+.+-+..|++.|++++|+.++...+...++..|+...|
T Consensus 110 ~~~~~l~~l~~~g~~~~i~tn~~~~~~~~l~~~gl~~~f 148 (263)
T 3k1z_A 110 GAEDTLRECRTRGLRLAVISNFDRRLEGILGGLGLREHF 148 (263)
T ss_dssp THHHHHHHHHHTTCEEEEEESCCTTHHHHHHHTTCGGGC
T ss_pred CHHHHHHHHHhCCCcEEEEeCCcHHHHHHHHhCCcHHhh
Confidence 345556667889999999999877788889999987544
No 91
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=20.13 E-value=2.1e+02 Score=25.19 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=40.7
Q ss_pred CCeEEEEeCCccCCCC-------C-hHH--H--HHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHcCCCcccc
Q 010333 99 GGTFVVIISGEIVSSP-------Y-LDP--I--LKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYL 157 (513)
Q Consensus 99 gkt~VIKlGGs~l~~~-------~-l~~--l--~~dIA~L~~lGirvVLVHGg-gpqI~~~L~~~Gi~~~~~ 157 (513)
-|.++.-++|.++... . +.. + ..-|..|++.|++++||.|. ...+...++.+|+..-|.
T Consensus 26 ik~vifD~DGTL~~~~~~~~~~~~~~~~~~~~d~~~l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~ 97 (188)
T 2r8e_A 26 IRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQ 97 (188)
T ss_dssp CSEEEECCCCCCBCSEEEEETTSCEEEEEEHHHHHHHHHHHTTTCEEEEECSSCCHHHHHHHHHHTCCEEEC
T ss_pred CCEEEEeCCCCcCCCCEEecCCCcEEEEeecccHHHHHHHHHCCCeEEEEeCCChHHHHHHHHHcCCceeec
Confidence 4788888988887631 1 111 1 11366688899999999987 456777888899875443
Done!