BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010335
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 89.7 bits (221), Expect = 3e-18, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 80/156 (51%), Gaps = 34/156 (21%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PLH AA GH E+V LLLE GADVN+++ G+T L A R GH EVV+ LL +V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
D +GRT LH AA NGH+ ++L+ +++ D
Sbjct: 64 KDK-NGRTPLHLAARNGHLEVVKLL--------------------------LEAGAD--- 93
Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 202
VN G T LH+AA NG+ + V+LLL+ A
Sbjct: 94 ----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 86.7 bits (213), Expect = 3e-17, Method: Composition-based stats.
Identities = 51/116 (43%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AAR+G K+LL+ + G +PLH AA GH E+V LLLE GADVN+++
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNG--RTPLHLAARNGHLEVVKLLLEAGADVNAKDK 66
Query: 77 CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 132
G+T L A R GH EVV+ LL +V D +GRT LH AA NGH+ ++L++
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLL 121
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 43/151 (28%)
Query: 111 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 170
+GRT LH AA NGH+ ++L+ +++ D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLL--------------------------LEAGAD------- 27
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN G T LH+AA NG+ + V+LLL+ A+V+A + G TPLH AA
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAAR 77
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
G+L+ ++LL GA + + NG PL +A
Sbjct: 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
AAR+G K+LL+ + G +PLH AA GH E+V LLLE GA
Sbjct: 75 AARNGHLEVVKLLLEAGADVNAKDKNG--RTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + T+G ++PLH AA GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTYG--DTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+ ++ G T L A + GH E+V+ LL + +V AD G T LH AA GH+ + +
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEV 131
Query: 131 VV 132
++
Sbjct: 132 LL 133
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ + G T L A R GH E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
D+ SG T LH AA GH+ + ++ +K D
Sbjct: 74 NALDF-SGSTPLHLAAKRGHLEIVEVL--------------------------LKYGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
VN G T LH+AA G+ + V++LL A+V+A T+ D+
Sbjct: 106 ------VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AAR G ++LL N F G ++PLH AA +GH EIV +LL+ GADVN+ +
Sbjct: 54 AARVGHLEIVEVLLK-NGADVNALDFSG-STPLHLAAKRGHLEIVEVLLKYGADVNADDT 111
Query: 77 CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
G T L A GH E+V+ LL + +V D G+TA + NG+
Sbjct: 112 IGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKF-GKTAFDISIDNGN 158
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN G T LH+AA G+ + V++LL A+V+A+ F +GSTPLH AA
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDF----------SGSTPLHLAAK 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
G+L+ +VLL GA + + G PL +A
Sbjct: 90 RGHLEIVEVLLKYGADVNADDTIGSTPLHLA 120
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 44/164 (26%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
L++A R G + V+ L+ +V D G T LH AA GH+ + +++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTY-GDTPLHLAARVGHLEIVEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
K+ D +AL G T LH+AA G+ + V++LL
Sbjct: 68 -----------------KNGADVNALDF-------SGSTPLHLAAKRGHLEIVEVLLKYG 103
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
A+V+A D IG STPLH AA G+L+ +VLL GA
Sbjct: 104 ADVNA--------DDTIG--STPLHLAADTGHLEIVEVLLKYGA 137
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
AA G D V++L+ A+V+A + G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTY----------GDTPLHLAARVGHLEIVEVLLKNG 70
Query: 245 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
A +L+ +G PL +A G +E LL +D
Sbjct: 71 ADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 75/126 (59%), Gaps = 3/126 (2%)
Query: 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN 67
S G+RL+ AA +G+ K L++ + + G +PLH+AA +GH EIV LL+
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHYAAKEGHKEIVKLLISK 59
Query: 68 GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127
GADVN+++ G+T L A + GH E+V+ L+ +V D GRT LH+AA GH
Sbjct: 60 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS-DGRTPLHYAAKEGHKEI 118
Query: 128 IRLVVA 133
++L+++
Sbjct: 119 VKLLIS 124
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PLH+AA +GH EIV LL+ GADVN+++ G+T L A + GH E+V+ L+ +V
Sbjct: 72 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNT 131
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLV 131
+D GRT L A +G+ ++L+
Sbjct: 132 SDS-DGRTPLDLAREHGNEEIVKLL 155
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 77/222 (34%)
Query: 52 AAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS 111
AA G+ + V L+ENGADVN+ +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDS----------------------------------D 36
Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
GRT LH+AA GH ++L+++ G+ V +K
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISK--------------------GADVNAK---------- 66
Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
G T LH AA G+ + V+LL+ A+V+A G TPLH+AA
Sbjct: 67 ---DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD----------SDGRTPLHYAAKE 113
Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
G+ + ++L+S+GA + + +G PLD+AR G + LL
Sbjct: 114 GHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 93/219 (42%), Gaps = 48/219 (21%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
+ +PLH AA GH E+ LL+N A VN++ QT L A R GH +V+ LL N
Sbjct: 47 VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 106
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
A +G T LH AA GHV + + ++ + Q
Sbjct: 107 NLATT-AGHTPLHIAAREGHVETVLAL--------------------------LEKEASQ 139
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLL--DLHANVSAVTFHYGTSMDLIGAGS 222
+ ++K G T LH+AA G +LLL D H N + G
Sbjct: 140 ACMTK-------KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN------------GL 180
Query: 223 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
TPLH A NL ++LL RG S S NG+ PL +A
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 116/264 (43%), Gaps = 43/264 (16%)
Query: 17 AARDGDFVEAKMLLD--CNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR 74
AAR G K+LL+ NP LA +T G ++PLH AA +GH E V LLE A
Sbjct: 87 AARIGHTNMVKLLLENNANPNLA--TTAG--HTPLHIAAREGHVETVLALLEKEASQACM 142
Query: 75 NYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV-- 132
G T L A +YG V + LLL R A +G T LH A + ++ ++L++
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAE-LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Query: 133 --ADFVPS----VPFEV--MNTQIEGDRG---DGSSVKSKCDQSALSKFVNKAADGGITA 181
+ P+ P + Q+E R G S ++ Q G+T
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-------------GVTP 248
Query: 182 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 241
LH+AA G+ + V LLL AN + G +G TPLH A G++ VL+
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGN-----LGNK-----SGLTPLHLVAQEGHVPVADVLI 298
Query: 242 SRGASRMSLNCNGWLPLDVARMWG 265
G + G+ PL VA +G
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYG 322
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 114/263 (43%), Gaps = 41/263 (15%)
Query: 17 AARDGDFVEAKMLL--DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR 74
AA+ G A++LL D +P A + +PLH A + +IV LLL G +S
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGL----TPLHVAVHHNNLDIVKLLLPRGGSPHSP 208
Query: 75 NYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVAD 134
+ G T L A + EV ++LL + + A+ + G T LH AA GH + L
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVAL---- 263
Query: 135 FVPSVPFEVMNTQIEGDRGDGSSVK--SKCDQSA-------LSK---FVNKAADGGITAL 182
+++ Q G+ G+ S + Q L K V+ G T L
Sbjct: 264 --------LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL 315
Query: 183 HMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 242
H+A+ G V+ LL A+V+A T G +PLH AA G+ +LL
Sbjct: 316 HVASHYGNIKLVKFLLQHQADVNAKT----------KLGYSPLHQAAQQGHTDIVTLLLK 365
Query: 243 RGASRMSLNCNGWLPLDVARMWG 265
GAS ++ +G PL +A+ G
Sbjct: 366 NGASPNEVSSDGTTPLAIAKRLG 388
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 12/161 (7%)
Query: 114 TALHFAAVNGHVRCIR-LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN 172
T LH A+ GH+ ++ L+ P+V + T + G + +K +K
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 173 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 232
KA D T LH AA G+ + V+LLL+ +AN + T AG TPLH AA G
Sbjct: 76 KAKDDQ-TPLHCAARIGHTNMVKLLLENNANPNLATT----------AGHTPLHIAAREG 124
Query: 233 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
+++ LL + AS+ + G+ PL VA +G+ + LL
Sbjct: 125 HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
A+ G+ K LL + + G SPLH AA +GH +IV LLL+NGA N +
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKTKLG--YSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375
Query: 77 CGQTALMQACRYGHWEVVQTL 97
G T L A R G+ V L
Sbjct: 376 DGTTPLAIAKRLGYISVTDVL 396
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 179 ITALHMAALNGYFDCVQLLLDLHA--NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 236
+T LH+A+ G+ V+ LL A NVS V TPLH AA G+ +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKV------------ETPLHMAARAGHTEV 62
Query: 237 CQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
+ LL A + + PL A G + LL
Sbjct: 63 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 99
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 83.2 bits (204), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN 67
S G+RL+ AA +G+ K L++ + + G +PLH AA GH E+V LL+
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHHAAENGHKEVVKLLISK 59
Query: 68 GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127
GADVN+++ G+T L A GH EVV+ L+ +V D GRT LH AA NGH
Sbjct: 60 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEV 118
Query: 128 IRLVVA 133
++L+++
Sbjct: 119 VKLLIS 124
Score = 65.5 bits (158), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PLH AA GH E+V LL+ GADVN+++ G+T L A GH EVV+ L+ +V
Sbjct: 72 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT 131
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLV 131
+D GRT L A +G+ ++L+
Sbjct: 132 SDS-DGRTPLDLAREHGNEEVVKLL 155
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 61/222 (27%), Positives = 90/222 (40%), Gaps = 77/222 (34%)
Query: 52 AAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS 111
AA G+ + V L+ENGADVN+ +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDS----------------------------------D 36
Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
GRT LH AA NGH ++L+++ G+ V +K
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISK--------------------GADVNAK---------- 66
Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
G T LH AA NG+ + V+LL+ A+V+A G TPLH AA
Sbjct: 67 ---DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD----------SDGRTPLHHAAEN 113
Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
G+ + ++L+S+GA + + +G PLD+AR G + LL
Sbjct: 114 GHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 35.4 bits (80), Expect = 0.068, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
AA NG D V+ L++ A+V+A + D G TPLH AA G+ + ++L+S+G
Sbjct: 11 AAENGNKDRVKDLIENGADVNA------SDSD----GRTPLHHAAENGHKEVVKLLISKG 60
Query: 245 ASRMSLNCNGWLPLDVARMWGRHWLEPLL--------APSSDAVMPRFHPS 287
A + + +G PL A G + LL A SD P H +
Sbjct: 61 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 111
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 82.8 bits (203), Expect = 4e-16, Method: Composition-based stats.
Identities = 53/126 (42%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN 67
S G+RL+ AA +G+ K LL+ N S G +PLH+AA GH EIV LLL
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLE-NGADPNASDSDG-RTPLHYAAENGHKEIVKLLLSK 59
Query: 68 GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127
GAD N+++ G+T L A GH E+V+ LLL + A GRT LH+AA NGH
Sbjct: 60 GADPNAKDSDGRTPLHYAAENGHKEIVK-LLLSKGADPNAKDSDGRTPLHYAAENGHKEI 118
Query: 128 IRLVVA 133
++L+++
Sbjct: 119 VKLLLS 124
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 63/222 (28%), Positives = 91/222 (40%), Gaps = 77/222 (34%)
Query: 52 AAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS 111
AA G+ + V LLENGAD N+ +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDS----------------------------------D 36
Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
GRT LH+AA NGH ++L+++ D +A
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLS--------------------------KGADPNA----- 65
Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
K +DG T LH AA NG+ + V+LLL A+ +A G TPLH+AA
Sbjct: 66 -KDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNAKD----------SDGRTPLHYAAEN 113
Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
G+ + ++LLS+GA + + +G PLD+AR G + LL
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PLH+AA GH EIV LLL GAD N+ + G+T L A +G+ E+V+ L
Sbjct: 105 TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 82.0 bits (201), Expect = 6e-16, Method: Composition-based stats.
Identities = 43/86 (50%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PLH AA GH E+V LLLE GADVN+++ G+T L A R GH EVV+ LL +V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV 132
D +GRT LH AA NGH+ ++L++
Sbjct: 64 KDK-NGRTPLHLAARNGHLEVVKLLL 88
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 43/135 (31%)
Query: 111 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 170
+GRT LH AA NGH+ ++L++ ++ D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL--------------------------EAGAD------- 27
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN G T LH+AA NG+ + V+LLL+ A+V+A + G TPLH AA
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAAR 77
Query: 231 GGNLKCCQVLLSRGA 245
G+L+ ++LL GA
Sbjct: 78 NGHLEVVKLLLEAGA 92
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 34/125 (27%)
Query: 78 GQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP 137
G+T L A R GH EVV+ LL +V D +GRT LH AA NGH+ ++L+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLL------ 54
Query: 138 SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 197
+++ D VN G T LH+AA NG+ + V+LL
Sbjct: 55 --------------------LEAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 198 LDLHA 202
L+ A
Sbjct: 88 LEAGA 92
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
G T LH+AA NG+ + V+LLL+ A+V+A + G TPLH AA G+L+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVV 51
Query: 238 QVLLSRGASRMSLNCNGWLPLDVA 261
++LL GA + + NG PL +A
Sbjct: 52 KLLLEAGADVNAKDKNGRTPLHLA 75
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
AAR+G K+LL+ + G +PLH AA GH E+V LLLE GA
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNG--RTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N F G +PLH AA GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNARDFTGW-TPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+++ G T L A R GH E+V+ LL +V +D G T LH AA GH+ + +
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDS-HGFTPLHLAAKRGHLEIVEV 131
Query: 131 VVAD 134
++ +
Sbjct: 132 LLKN 135
Score = 72.4 bits (176), Expect = 6e-13, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+R++ G T L A +GH E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
D L G T LH AA GH+ + ++ +K+ D
Sbjct: 74 NAKDSL-GVTPLHLAARRGHLEIVEVL--------------------------LKNGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
VN + G T LH+AA G+ + V++LL A+V+A T+ D+
Sbjct: 106 ------VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PLH AA +GH EIV +LL+NGADVN+ + G T L A + GH E+V+ LL +V
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNA 141
Query: 107 ADYLSGRTALHFAAVNGH 124
D G+TA + NG+
Sbjct: 142 QDKF-GKTAFDISIDNGN 158
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN G T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD----------SLGVTPLHLAAR 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
G+L+ +VLL GA + + +G+ PL +A G +E LL +D
Sbjct: 90 RGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ Y +G +PLH AAA GH EIV +LL NGAD
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADANAYDHYG--RTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+ + G T L A GH E+V+ LL + +V D +G T L+ AA GH+ + +
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD-ATGITPLYLAAYWGHLEIVEV 119
Query: 131 VV 132
++
Sbjct: 120 LL 121
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGAD N+ ++ G+T L A GH E+V+ LL +V
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV 61
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
D +G T LH AA GH+ + ++ +K D
Sbjct: 62 NAVD-TNGTTPLHLAASLGHLEIVEVL--------------------------LKYGAD- 93
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
VN GIT L++AA G+ + V++LL A+V+A T+ D+
Sbjct: 94 ------VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDI 140
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
G T LHMAA G+ + V++LL A+V+AV + G+TPLH AA G+L+
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN----------GTTPLHLAASLGHLEIV 84
Query: 238 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
+VLL GA + + G PL +A WG +E LL +D
Sbjct: 85 EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 44/164 (26%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
L++A R G + V+ L+ + D+ GRT LH AA GH+ + +++
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHY-GRTPLHMAAAVGHLEIVEVLL--------- 55
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
++ D VN G T LH+AA G+ + V++LL
Sbjct: 56 -----------------RNGAD-------VNAVDTNGTTPLHLAASLGHLEIVEVLLKYG 91
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
A+V+A G TPL+ AA G+L+ +VLL GA
Sbjct: 92 ADVNAKD----------ATGITPLYLAAYWGHLEIVEVLLKHGA 125
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PL+ AA GH EIV +LL++GADVN+++ G+TA + G+ ++ + L
Sbjct: 103 TPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/124 (37%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G +PLH AA GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGW--TPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+ ++ G T L A +GH E+V+ LL +V D + G T LH AA+ GH+ + +
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND-MEGHTPLHLAAMFGHLEIVEV 131
Query: 131 VVAD 134
++ +
Sbjct: 132 LLKN 135
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PL AA GH EIV +LL+NGADVN+ + G T L A +GH E+V+ LL +V
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141
Query: 107 ADYLSGRTALHFAAVNGH 124
D G+TA + NG+
Sbjct: 142 QDKF-GKTAFDISIDNGN 158
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ + G T L A GH E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
D+ +G T L AA+ GH+ + ++ +K+ D
Sbjct: 74 NAVDH-AGMTPLRLAALFGHLEIVEVL--------------------------LKNGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
VN G T LH+AA+ G+ + V++LL A+V+A T+ D+
Sbjct: 106 ------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 58.5 bits (140), Expect = 8e-09, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN G T LH+AA NG+ + V++LL A+V+AV AG TPL AA
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH----------AGMTPLRLAAL 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
G+L+ +VLL GA + + G PL +A M+G +E LL +D
Sbjct: 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
++PLH AA GH EIV +LL+NGADVN+++ G+TA + G+ ++ + L
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
AA G D V++L+ A+V+A +G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGRDDEVRILMANGADVNAED----------ASGWTPLHLAAFNGHLEIVEVLLKNG 70
Query: 245 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
A +++ G PL +A ++G +E LL +D
Sbjct: 71 ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 79.3 bits (194), Expect = 4e-15, Method: Composition-based stats.
Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN 67
S G+RL+ AA +G+ K LL+ + + G +PLH AA GH E+V LLL
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDG--KTPLHLAAENGHKEVVKLLLSQ 59
Query: 68 GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127
GAD N+++ G+T L A GH EVV+ LLL + A G+T LH AA NGH
Sbjct: 60 GADPNAKDSDGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDSDGKTPLHLAAENGHKEV 118
Query: 128 IRLVVA 133
++L+++
Sbjct: 119 VKLLLS 124
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 63/222 (28%), Positives = 91/222 (40%), Gaps = 77/222 (34%)
Query: 52 AAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS 111
AA G+ + V LLENGADVN+ +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDS----------------------------------D 36
Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
G+T LH AA NGH ++L+++ D +A
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLS--------------------------QGADPNA----- 65
Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
K +DG T LH+AA NG+ + V+LLL A+ +A G TPLH AA
Sbjct: 66 -KDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAKD----------SDGKTPLHLAAEN 113
Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
G+ + ++LLS+GA + + +G PLD+AR G + LL
Sbjct: 114 GHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PLH AA GH E+V LLL GAD N+ + G+T L A +G+ EVV+ L
Sbjct: 105 TPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G +PLH AA KGH EIV +LL++GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDDSG--KTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+ + G T L A YGH E+V+ LL +V D G T LH AA GH+ + +
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTY-GFTPLHLAADAGHLEIVEV 131
Query: 131 VV 132
++
Sbjct: 132 LL 133
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ + G+T L A GH E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
AD + G T LH AA+ GH+ + ++ +K+ D
Sbjct: 74 NAADKM-GDTPLHLAALYGHLEIVEVL--------------------------LKNGADV 106
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
+A + G T LH+AA G+ + V++LL A+V+A T+ D+
Sbjct: 107 NATDTY-------GFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
++PLH AA GH EIV +LL+NGADVN+ + G T L A GH E+V+ LL + +V
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 106 RADYLSGRTALHFAAVNGH 124
D G+TA + NG+
Sbjct: 141 AQDKF-GKTAFDISIDNGN 158
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 44/164 (26%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
L++A R G + V+ L+ +V D SG+T LH AA+ GH+ + +++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDD-SGKTPLHLAAIKGHLEIVEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
K D VN A G T LH+AAL G+ + V++LL
Sbjct: 68 -----------------KHGAD-------VNAADKMGDTPLHLAALYGHLEIVEVLLKNG 103
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
A+V+A + G TPLH AA G+L+ +VLL GA
Sbjct: 104 ADVNATDTY----------GFTPLHLAADAGHLEIVEVLLKYGA 137
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN D G T LH+AA+ G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD----------KMGDTPLHLAAL 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
G+L+ +VLL GA + + G+ PL +A
Sbjct: 90 YGHLEIVEVLLKNGADVNATDTYGFTPLHLA 120
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
AA G D V++L+ A+V+A +G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGQDDEVRILMANGADVNAED----------DSGKTPLHLAAIKGHLEIVEVLLKHG 70
Query: 245 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
A + + G PL +A ++G +E LL +D
Sbjct: 71 ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGAD 105
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 77.8 bits (190), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G ++PLH AA GH EIV +LL+ GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDWLG--HTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+ + G T L A GH E+V+ LL +V DY G T LH AA +GH+ + +
Sbjct: 73 VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDY-EGFTPLHLAAYDGHLEIVEV 131
Query: 131 VV 132
++
Sbjct: 132 LL 133
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ ++ G T L A + GH E+V+ LL + +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
D G T LH AA NGH+ + +++ G+ V +K +
Sbjct: 74 NAWDNY-GATPLHLAADNGHLEIVEVLLK--------------------HGADVNAKDYE 112
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
G T LH+AA +G+ + V++LL A+V+A T+ D+
Sbjct: 113 -------------GFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AA+ G ++LL + + +G +PLH AA GH EIV +LL++GADVN+++Y
Sbjct: 54 AAKTGHLEIVEVLLKYGADVNAWDNYGA--TPLHLAADNGHLEIVEVLLKHGADVNAKDY 111
Query: 77 CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
G T L A GH E+V+ LL + +V D G+TA + NG+
Sbjct: 112 EGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKF-GKTAFDISIDNGN 158
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 44/164 (26%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
L++A R G + V+ L+ +V D+L G T LH AA GH+ + +++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWL-GHTPLHLAAKTGHLEIVEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
K D +A + G T LH+AA NG+ + V++LL
Sbjct: 68 -----------------KYGADVNAWDNY-------GATPLHLAADNGHLEIVEVLLKHG 103
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
A+V+A + G TPLH AA G+L+ +VLL GA
Sbjct: 104 ADVNAKDYE----------GFTPLHLAAYDGHLEIVEVLLKYGA 137
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
G T LH+AA G+ + V++LL A+V+A + G+TPLH AA G+L+
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY----------GATPLHLAADNGHLEIV 96
Query: 238 QVLLSRGASRMSLNCNGWLPLDVA 261
+VLL GA + + G+ PL +A
Sbjct: 97 EVLLKHGADVNAKDYEGFTPLHLA 120
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PLH AA GH EIV +LL+ GADVN+++ G+TA + G+ ++ + L
Sbjct: 115 TPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + + G ++PLH AA GH EIV +LL++GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQG--STPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+R+ G T L A GH E+V+ LL + +V D G T LH AA GH+ + +
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAY-GLTPLHLAADRGHLEIVEV 131
Query: 131 VV 132
++
Sbjct: 132 LL 133
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ + G T L A GH E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
D G T LH AA NGH+ + ++ +K D
Sbjct: 74 NARD-TDGWTPLHLAADNGHLEIVEVL--------------------------LKYGADV 106
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
+A + G+T LH+AA G+ + V++LL A+V+A T+ D+
Sbjct: 107 NAQDAY-------GLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PLH AA GH EIV +LL+ GADVN+++ G T L A GH E+V+ LL +V
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Query: 107 ADYLSGRTALHFAAVNGH 124
D G+TA + NG+
Sbjct: 142 QDKF-GKTAFDISIDNGN 158
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 69/164 (42%), Gaps = 44/164 (26%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
L++A R G + V+ L+ +V D G T LH AA GH + +++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDD-QGSTPLHLAAWIGHPEIVEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
K D VN G T LH+AA NG+ + V++LL
Sbjct: 68 -----------------KHGAD-------VNARDTDGWTPLHLAADNGHLEIVEVLLKYG 103
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
A+V+A + G TPLH AA G+L+ +VLL GA
Sbjct: 104 ADVNAQDAY----------GLTPLHLAADRGHLEIVEVLLKHGA 137
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN D G T LH+AA G+ + V++LL A+V+A D G TPLH AA
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNA------RDTD----GWTPLHLAAD 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
G+L+ +VLL GA + + G PL +A
Sbjct: 90 NGHLEIVEVLLKYGADVNAQDAYGLTPLHLA 120
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PLH AA +GH EIV +LL++GADVN+++ G+TA + G+ ++ + L
Sbjct: 115 TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N + GL +PLH AA GH EIV +LL++GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNATDASGL-TPLHLAATYGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+ + G T L A GH E+V+ LL +V D G T LH AA+ GH+ + +
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW-GDTPLHLAAIMGHLEIVEV 131
Query: 131 VV 132
++
Sbjct: 132 LL 133
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ + G T L A YGH E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
D + G T LH AA+ GH+ + ++ +K D
Sbjct: 74 NAIDIM-GSTPLHLAALIGHLEIVEVL--------------------------LKHGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
VN G T LH+AA+ G+ + V++LL A+V+A T+ D+
Sbjct: 106 ------VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN G+T LH+AA G+ + V++LL A+V+A+ D++G STPLH AA
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI--------DIMG--STPLHLAAL 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
G+L+ +VLL GA +++ G PL +A + G +E LL +D
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
++PLH AA GH EIV +LL++GADVN+++ G+TA + G+ ++ + L
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N + GL +PLH AA GH EIV +LL++GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNATDASGL-TPLHLAATYGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+ + G T L A GH E+V+ LL +V D G T LH AA+ GH+ + +
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW-GDTPLHLAAIMGHLEIVEV 131
Query: 131 VV 132
++
Sbjct: 132 LL 133
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ + G T L A YGH E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
D + G T LH AA+ GH+ + ++ +K D
Sbjct: 74 NAID-IXGSTPLHLAALIGHLEIVEVL--------------------------LKHGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
VN G T LH+AA+ G+ + V++LL A+V+A T+ D+
Sbjct: 106 ------VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN G+T LH+AA G+ + V++LL A+V+A+ GSTPLH AA
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI----------XGSTPLHLAAL 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
G+L+ +VLL GA +++ G PL +A + G +E LL +D
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
++PLH AA GH EIV +LL++GADVN+++ G+TA + G+ ++ + L
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
AA G D V++L+ A+V+A +G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGQDDEVRILMANGADVNATD----------ASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 245 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
A +++ G PL +A + G +E LL +D
Sbjct: 71 ADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 76.6 bits (187), Expect = 3e-14, Method: Composition-based stats.
Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 11/126 (8%)
Query: 11 GERLVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLE 66
G++L+ AAR G E ++L+ D N +T +PLH AA+ GH EIV +LL+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVN------ATDNDGYTPLHLAASNGHLEIVEVLLK 68
Query: 67 NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR 126
NGADVN+ + G T L A GH E+V+ LL +V D G T LH AA GH+
Sbjct: 69 NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLE 127
Query: 127 CIRLVV 132
+ +++
Sbjct: 128 IVEVLL 133
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PLH AAA GH EIV +LL++GADVN+ + G T L A +YGH E+V+ LL +V
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Query: 107 ADYLSGRTALHFAAVNGH 124
D G+TA + NG+
Sbjct: 142 QDKF-GKTAFDISIDNGN 158
Score = 64.3 bits (155), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ + G T L A GH E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
+D L+G T LH AA GH+ + ++ +K D
Sbjct: 74 NASD-LTGITPLHLAAATGHLEIVEVL--------------------------LKHGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
VN + G T LH+AA G+ + V++LL A+V+A T+ D+
Sbjct: 106 ------VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN + G T LH+AA NG+ + V++LL A+V+A DL G TPLH AA
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA--------SDLTGI--TPLHLAAA 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
G+L+ +VLL GA + + +G PL +A +G +E LL +D
Sbjct: 90 TGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AA G ++LL + Y G ++PLH AA GH EIV +LL++GADVN+++
Sbjct: 87 AAATGHLEIVEVLLKHGADVNAYDNDG--HTPLHLAAKYGHLEIVEVLLKHGADVNAQDK 144
Query: 77 CGQTALMQACRYGHWEVVQTL 97
G+TA + G+ ++ + L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 76.3 bits (186), Expect = 4e-14, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G +PLH AA GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAADVVGW--TPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+ + G T L A +GH E+V+ LL +V D +G T LH AA GH+ + +
Sbjct: 73 VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDD-NGITPLHLAANRGHLEIVEV 131
Query: 131 VV 132
++
Sbjct: 132 LL 133
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ + G T L A +GH E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
D L G T LH AA GH+ + ++ +K+ D
Sbjct: 74 NAYDTL-GSTPLHLAAHFGHLEIVEVL--------------------------LKNGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
VN D GIT LH+AA G+ + V++LL A+V+A T+ D+
Sbjct: 106 ------VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AA G ++LL + Y T G ++PLH AA GH EIV +LL+NGADVN+++
Sbjct: 54 AAYWGHLEIVEVLLKNGADVNAYDTLG--STPLHLAAHFGHLEIVEVLLKNGADVNAKDD 111
Query: 77 CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
G T L A GH E+V+ LL + +V D G+TA + NG+
Sbjct: 112 NGITPLHLAANRGHLEIVEVLLKYGADVNAQDKF-GKTAFDISINNGN 158
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN A G T LH+AA G+ + V++LL A+V+A Y T GSTPLH AA
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA----YDT------LGSTPLHLAAH 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
G+L+ +VLL GA + + NG PL +A
Sbjct: 90 FGHLEIVEVLLKNGADVNAKDDNGITPLHLA 120
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 44/164 (26%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
L++A R G + V+ L+ +V AD + G T LH AA GH+ + +++
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVV-GWTPLHLAAYWGHLEIVEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
K+ D +A G T LH+AA G+ + V++LL
Sbjct: 68 -----------------KNGADVNAYDTL-------GSTPLHLAAHFGHLEIVEVLLKNG 103
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
A+V+A G TPLH AA G+L+ +VLL GA
Sbjct: 104 ADVNAKD----------DNGITPLHLAANRGHLEIVEVLLKYGA 137
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PLH AA +GH EIV +LL+ GADVN+++ G+TA + G+ ++ + L
Sbjct: 115 TPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
AA G D V++L+ A+V+A D++G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGRDDEVRILMANGADVNAA--------DVVGW--TPLHLAAYWGHLEIVEVLLKNG 70
Query: 245 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
A + + G PL +A +G +E LL +D
Sbjct: 71 ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 75.9 bits (185), Expect = 5e-14, Method: Composition-based stats.
Identities = 55/153 (35%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N GL +PLH AA GH EIV +LL++GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILI-ANGADVNAVDNTGL-TPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
V++ + G T L A GH E+V+ LL + +V D ++G T LH AA GH+ + +
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFD-MTGSTPLHLAADEGHLEIVEV 131
Query: 131 VV---ADFVPSVPFEVMNTQIEGDRGDGSSVKS 160
++ AD F I D G+ KS
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAKS 164
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ + G T L A GH E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
AD + G T LH AA+ GH+ + ++ +K D
Sbjct: 74 DAAD-VYGFTPLHLAAMTGHLEIVEVL--------------------------LKYGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
VN G T LH+AA G+ + V++LL A+V+A T+ D+
Sbjct: 106 ------VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 44/164 (26%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
L++A R G + V+ L+ +V D +G T LH AAV+GH+ + +++
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDN-TGLTPLHLAAVSGHLEIVEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
K D A + G T LH+AA+ G+ + V++LL
Sbjct: 68 -----------------KHGADVDAADVY-------GFTPLHLAAMTGHLEIVEVLLKYG 103
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
A+V+A GSTPLH AA G+L+ +VLL GA
Sbjct: 104 ADVNAFDM----------TGSTPLHLAADEGHLEIVEVLLKYGA 137
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN + G+T LH+AA++G+ + V++LL A+V A + G TPLH AA
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY----------GFTPLHLAAM 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
G+L+ +VLL GA + + G PL +A
Sbjct: 90 TGHLEIVEVLLKYGADVNAFDMTGSTPLHLA 120
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
AA G D V++L+ A+V+AV G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVD----------NTGLTPLHLAAVSGHLEIVEVLLKHG 70
Query: 245 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
A + + G+ PL +A M G +E LL +D
Sbjct: 71 ADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 75.9 bits (185), Expect = 5e-14, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G +PLH AA +GH EIV +LL+ GAD
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+++ G T L A R GH E+V+ LL +V D G T LH AA GH+ + +
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEV 119
Query: 131 VV 132
++
Sbjct: 120 LL 121
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+++ G T L A R GH E+V+ LL +V
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
D G T LH AA GH+ + ++ +K+ D
Sbjct: 62 NAKDK-DGYTPLHLAAREGHLEIVEVL--------------------------LKAGAD- 93
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
VN G T LH+AA G+ + V++LL A+V+A T DL
Sbjct: 94 ------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL 140
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AAR+G ++LL + G +PLH AA +GH EIV +LL+ GADVN+++
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNAKDK 99
Query: 77 CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
G T L A R GH E+V+ LL +V D G+T A GH
Sbjct: 100 DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF-GKTPFDLAIREGH 146
Score = 55.1 bits (131), Expect = 9e-08, Method: Composition-based stats.
Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 44/180 (24%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
L++A R G + V+ L+ +V D G T LH AA GH+ + +++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL--------- 55
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
K+ D VN G T LH+AA G+ + V++LL
Sbjct: 56 -----------------KAGAD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
A+V+A D G TPLH AA G+L+ +VLL GA + + G P D+A
Sbjct: 92 ADVNA------KDKD----GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AAR+G ++LL + G +PLH AA +GH EIV +LL+ GADVN+++
Sbjct: 75 AAREGHLEIVEVLLKAGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
Query: 77 CGQTALMQACRYGHWEVVQTL 97
G+T A R GH ++ + L
Sbjct: 133 FGKTPFDLAIREGHEDIAEVL 153
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN G T LH+AA G+ + V++LL A+V+A D G TPLH AA
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAR 77
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
G+L+ +VLL GA + + +G+ PL +A G +E LL +D
Sbjct: 78 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 75.9 bits (185), Expect = 5e-14, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G +PLH AA +GH EIV +LL+ GAD
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+++ G T L A R GH E+V+ LL +V D G T LH AA GH+ + +
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEV 119
Query: 131 VV 132
++
Sbjct: 120 LL 121
Score = 68.9 bits (167), Expect = 6e-12, Method: Composition-based stats.
Identities = 59/196 (30%), Positives = 83/196 (42%), Gaps = 44/196 (22%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+++ G T L A R GH E+V+ LL +V
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
D G T LH AA GH+ + ++ +K+ D
Sbjct: 62 NAKDK-DGYTPLHLAAREGHLEIVEVL--------------------------LKAGAD- 93
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224
VN G T LH+AA G+ + V++LL A+V+A G TP
Sbjct: 94 ------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD----------KFGKTP 137
Query: 225 LHFAACGGNLKCCQVL 240
A GN +VL
Sbjct: 138 FDLAIDNGNEDIAEVL 153
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AAR+G ++LL + G +PLH AA +GH EIV +LL+ GADVN+++
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNAKDK 99
Query: 77 CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
G T L A R GH E+V+ LL +V D G+T A NG+
Sbjct: 100 DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF-GKTPFDLAIDNGN 146
Score = 55.1 bits (131), Expect = 9e-08, Method: Composition-based stats.
Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 44/180 (24%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
L++A R G + V+ L+ +V D G T LH AA GH+ + +++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL--------- 55
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
K+ D VN G T LH+AA G+ + V++LL
Sbjct: 56 -----------------KAGAD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
A+V+A D G TPLH AA G+L+ +VLL GA + + G P D+A
Sbjct: 92 ADVNA------KDKD----GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN G T LH+AA G+ + V++LL A+V+A D G TPLH AA
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAR 77
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
G+L+ +VLL GA + + +G+ PL +A G +E LL +D
Sbjct: 78 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AAR+G ++LL + G +PLH AA +GH EIV +LL+ GADVN+++
Sbjct: 75 AAREGHLEIVEVLLKAGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
Query: 77 CGQTALMQACRYGHWEVVQTL 97
G+T A G+ ++ + L
Sbjct: 133 FGKTPFDLAIDNGNEDIAEVL 153
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 75.9 bits (185), Expect = 5e-14, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G +PLH AA +GH EIV +LL+ GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+++ G T L A R GH E+V+ LL +V D G T LH AA GH+ + +
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEV 131
Query: 131 VV 132
++
Sbjct: 132 LL 133
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+++ G T L A R GH E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
D G T LH AA GH+ + ++ +K+ D
Sbjct: 74 NAKDK-DGYTPLHLAAREGHLEIVEVL--------------------------LKAGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
VN G T LH+AA G+ + V++LL A+V+A T+ D+
Sbjct: 106 ------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 152
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AAR+G ++LL + G +PLH AA +GH EIV +LL+ GADVN+++
Sbjct: 54 AAREGHLEIVEVLLKAGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNAKDK 111
Query: 77 CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
G T L A R GH E+V+ LL +V D G+TA + NG+
Sbjct: 112 DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF-GKTAFDISIDNGN 158
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN G T LH+AA G+ + V++LL A+V+A D G TPLH AA
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAR 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
G+L+ +VLL GA + + +G+ PL +A G +E LL +D
Sbjct: 90 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AAR+G ++LL + G +PLH AA +GH EIV +LL+ GADVN+++
Sbjct: 87 AAREGHLEIVEVLLKAGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVNAQDK 144
Query: 77 CGQTALMQACRYGHWEVVQTL 97
G+TA + G+ ++ + L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + FG +PLH GH EI+ +LL+ AD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFG--ITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+ + G T L A GH E+V+ LL + +V DY G T LH AA +GH+ + +
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY-QGYTPLHLAAEDGHLEIVEV 131
Query: 131 VV 132
++
Sbjct: 132 LL 133
Score = 65.9 bits (159), Expect = 5e-11, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ ++ G T L GH E+++ LL + +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
+D SG T LH AA GH+ + ++ +K D
Sbjct: 74 NASDK-SGWTPLHLAAYRGHLEIVEVL--------------------------LKYGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
VN G T LH+AA +G+ + V++LL A+V+A T+ D+
Sbjct: 106 ------VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 65.5 bits (158), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PLH AA +GH EIV +LL+ GADVN+ +Y G T L A GH E+V+ LL + +V
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Query: 107 ADYLSGRTALHFAAVNGH 124
D G+TA + NG+
Sbjct: 142 QDKF-GKTAFDISIDNGN 158
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 44/164 (26%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
L++A R G + V+ L+ +V D+ G T LH NGH+ I +++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWF-GITPLHLVVNNGHLEIIEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
K D VN + G T LH+AA G+ + V++LL
Sbjct: 68 -----------------KYAAD-------VNASDKSGWTPLHLAAYRGHLEIVEVLLKYG 103
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
A+V+A+ + G TPLH AA G+L+ +VLL GA
Sbjct: 104 ADVNAMDYQ----------GYTPLHLAAEDGHLEIVEVLLKYGA 137
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
GIT LH+ NG+ + +++LL A+V+A +G TPLH AA G+L+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASD----------KSGWTPLHLAAYRGHLEIV 96
Query: 238 QVLLSRGASRMSLNCNGWLPLDVA 261
+VLL GA +++ G+ PL +A
Sbjct: 97 EVLLKYGADVNAMDYQGYTPLHLA 120
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PLH AA GH EIV +LL+ GADVN+++ G+TA + G+ ++ + L
Sbjct: 115 TPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
AA G D V++L+ A+V+A + G TPLH G+L+ +VLL
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWF----------GITPLHLVVNNGHLEIIEVLLKYA 70
Query: 245 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
A + + +GW PL +A G +E LL +D
Sbjct: 71 ADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N S G +PLH AA GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNASDHVGW-TPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+ + G T L A GH EVV+ LL +V D+ +G T LH AA GH+ + +
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDH-NGFTPLHLAANIGHLEIVEV 131
Query: 131 VV 132
++
Sbjct: 132 LL 133
Score = 65.9 bits (159), Expect = 5e-11, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 34/173 (19%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ ++ G T L A +GH E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
D L G T LH AA GH+ + ++ +K+ D
Sbjct: 74 NADDSL-GVTPLHLAADRGHLEVVEVL--------------------------LKNGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
VN G T LH+AA G+ + V++LL A+V+A T+ D+
Sbjct: 106 ------VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN + G T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD----------SLGVTPLHLAAD 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
G+L+ +VLL GA + + NG+ PL +A G +E LL +D
Sbjct: 90 RGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PLH AA GH EIV +LL++GADVN+++ G+TA + G+ ++ + L
Sbjct: 115 TPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 72.4 bits (176), Expect = 5e-13, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AA G E ++L+ N + GL +PLH AAA G EIV +LL+NGAD
Sbjct: 7 GKKLLEAAAAGQDDEVRILM-ANGADVNATDDNGL-TPLHLAAANGQLEIVEVLLKNGAD 64
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
VN+ + G T L A GH E+V+ LL +V D +G T LH AA++G + + +
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDR-AGWTPLHLAALSGQLEIVEV 123
Query: 131 VV 132
++
Sbjct: 124 LL 125
Score = 65.5 bits (158), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN D G+T LH+AA NG + V++LL A+V+A AG TPLH AA
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD----------SAGITPLHLAAY 81
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
G+L+ +VLL GA + + GW PL +A + G+ +E LL +D
Sbjct: 82 DGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Score = 62.0 bits (149), Expect = 8e-10, Method: Composition-based stats.
Identities = 60/229 (26%), Positives = 90/229 (39%), Gaps = 77/229 (33%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AAA G ++ V +L+ NGADVN+ +
Sbjct: 6 LGKKLLEAAAAGQDDEVRILMANGADVNATDD---------------------------- 37
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
+G T LH AA NG + + +++ K+ D
Sbjct: 38 ------NGLTPLHLAAANGQLEIVEVLL--------------------------KNGAD- 64
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224
VN + GIT LH+AA +G+ + V++LL A+V+A AG TP
Sbjct: 65 ------VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYD----------RAGWTP 108
Query: 225 LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
LH AA G L+ +VLL GA + + G D++ G+ L +L
Sbjct: 109 LHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AA DG ++LL + Y G +PLH AA G EIV +LL++GADVN+++
Sbjct: 79 AAYDGHLEIVEVLLKHGADVNAYDRAGW--TPLHLAALSGQLEIVEVLLKHGADVNAQDA 136
Query: 77 CGQTALMQACRYGHWEVVQTL 97
G TA + G ++ + L
Sbjct: 137 LGLTAFDISINQGQEDLAEIL 157
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 71.6 bits (174), Expect = 9e-13, Method: Composition-based stats.
Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ A R G E ++L+ + G +PLH AA +GH EIV +LL++GAD
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
VN+R+ G+T L A GH E+V+ LL + +V D G+TA + NG+
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF-GKTAFDISIDNGN 125
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L A G ++ V +L+ NGADVN+ + G T L A + GH E+V+ LL +V
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV 132
D + GRT LH AA GH+ + +++
Sbjct: 74 NARD-IWGRTPLHLAATVGHLEIVEVLL 100
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN D G+T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW----------GRTPLHLAAT 89
Query: 231 GGNLKCCQVLLSRGA 245
G+L+ +VLL GA
Sbjct: 90 VGHLEIVEVLLEYGA 104
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PLH AA GH EIV +LLE GADVN+++ G+TA + G+ ++ + L
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 35.8 bits (81), Expect = 0.053, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
A G D V++L+ A+V+A MD AG TPLH AA G+L+ +VLL G
Sbjct: 21 ATRAGQDDEVRILMANGADVNA--------MD--DAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 245 ASRMSLNCNGWLPLDVARMWG 265
A + + G PL +A G
Sbjct: 71 ADVNARDIWGRTPLHLAATVG 91
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 136/317 (42%), Gaps = 61/317 (19%)
Query: 12 ERLVSAARDGDFVEAKMLLDCNPCLAK-YSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
+ L+ AAR G+ E K++ P +++ G ++PLH AA IV LLL++GAD
Sbjct: 26 DELLEAARSGN--EEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
V++++ G L AC YGH+EV + LL V D L T LH AA V L
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD-LWQFTPLHEAASKNRVEVCSL 142
Query: 131 VVA----------------DFVPSVPF-EVMNTQIEGD-------RGDGSSVKSKCDQSA 166
+++ D P+ E + + +G D + VK A
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL---A 199
Query: 167 LSKFVNKAADGGITALH--MAALNGYFDCV-QLLLDLHANVS------------------ 205
L K TALH +A+L+ V +LLL ANV+
Sbjct: 200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH 259
Query: 206 ----AVTFHYGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 260
V +G M+ + + G T LH AA G+L+ C++LLS G+ ++ G+
Sbjct: 260 NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF----T 315
Query: 261 ARMWGRHWLEPLLAPSS 277
A G ++ +L+ S+
Sbjct: 316 AAQMGNEAVQQILSEST 332
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGH---NEIVALLLE 66
G L+ AAR+ D + K L + + + LH A A H ++ LLL
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALE--IINFKQPQSHETALHCAVASLHPKRKQVAELLLR 235
Query: 67 NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR 126
GA+VN +N T L A H +V++ L + D L G+TALH AA+ GH++
Sbjct: 236 KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSL-GQTALHRAALAGHLQ 294
Query: 127 CIRLVVA 133
RL+++
Sbjct: 295 TCRLLLS 301
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 1 MGNSFGCSASGERLVSAARDGDFVEAKML-----LDCNPCLAKYSTFGGLNSPLHFAAAK 55
MG S G S + +L+ AA+ GD K L ++C + ST PLHFAA
Sbjct: 3 MGISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST------PLHFAAGY 56
Query: 56 GHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTA 115
+V LL++GADV++++ G L AC YGH+EV + L+ V AD L T
Sbjct: 57 NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD-LWKFTP 115
Query: 116 LHFAAVNGHVRCIRLVV 132
LH AA G +L++
Sbjct: 116 LHEAAAKGKYEICKLLL 132
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 177 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 236
GG+ LH A G+++ +LL+ A V+ TPLH AA G +
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK----------FTPLHEAAAKGKYEI 127
Query: 237 CQVLLSRGASRMSLNCNGWLPLDVAR 262
C++LL GA N +G PLD+ +
Sbjct: 128 CKLLLQHGADPTKKNRDGNTPLDLVK 153
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTAL 82
+PLH AAAKG EI LLL++GAD +N G T L
Sbjct: 114 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 216 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
D+ G STPLHFAA + + LL GA + + G +PL A +G + + LL
Sbjct: 41 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 98
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G +L+ AAR G E ++L+ + G +PLH AA GH EIV +LL++GAD
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTG--TTPLHLAAYSGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
V++ + G T L A +GH E+V+ LL +V D G T LH AA G++ + +
Sbjct: 73 VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDS-DGMTPLHLAAKWGYLEIVEV 131
Query: 131 VV 132
++
Sbjct: 132 LL 133
Score = 65.5 bits (158), Expect = 7e-11, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 34/166 (20%)
Query: 52 AAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS 111
AA G ++ V +L+ NGADVN+ + G T L A GH E+V+ LL +V +D
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF- 79
Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
G T LH AA GH+ + +++ K+ D V
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLL--------------------------KNGAD-------V 106
Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
N G+T LH+AA GY + V++LL A+V+A T+ D+
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN A + G T LH+AA +G+ + V++LL A+V A G TPLH AA
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF----------GYTPLHLAAY 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265
G+L+ +VLL GA +++ +G PL +A WG
Sbjct: 90 WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWG 124
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PLH AA GH EIV +LL+NGADVN+ + G T L A ++G+ E+V+ LL +V
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Query: 107 ADYLSGRTALHFAAVNGH 124
D G+TA + NG+
Sbjct: 142 QDKF-GKTAFDISIDNGN 158
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 44/164 (26%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
L++A R G + V+ L+ +V AD +G T LH AA +GH+ + +++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADN-TGTTPLHLAAYSGHLEIVEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
K D A F G T LH+AA G+ + V++LL
Sbjct: 68 -----------------KHGADVDASDVF-------GYTPLHLAAYWGHLEIVEVLLKNG 103
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
A+V+A MD G TPLH AA G L+ +VLL GA
Sbjct: 104 ADVNA--------MD--SDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PLH AA G+ EIV +LL++GADVN+++ G+TA + G+ ++ + L
Sbjct: 115 TPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 98/228 (42%), Gaps = 22/228 (9%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
SPLH AA GH +I +L++ GA++++ + +T LM+A H E V+ L+ V
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
D G T LH AA GH ++ ++++ V N Q +G
Sbjct: 73 KD-AEGSTCLHLAAKKGHYEVVQYLLSNGQMDV-----NCQDDGGWTPMIWATEYKHVDL 126
Query: 167 LSKFVNKAADGGITA------LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA 220
+ ++K +D I LH AA +G D ++LL ++ AV H
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH---------- 176
Query: 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 268
G +PLH AA C + LSR + N G PL A + + W
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVW 224
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 30/189 (15%)
Query: 106 RADYLSGRTALHFAAVNGHVR-CIRLVVADFVPSVPFEVMNTQI--EGDRGDGSSVKSKC 162
+ ++ + R+ LH AA GHV C LV A E T + + +VK
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD----------------------- 199
AL V+ G T LH+AA G+++ VQ LL
Sbjct: 65 KAGAL---VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 200 LHANVSAVTFHYGTSMDLIGAGSTP-LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 258
H ++ + G+ +++ LH+AA G + ++LL+ ++N +G PL
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181
Query: 259 DVARMWGRH 267
+A R+
Sbjct: 182 HIAARENRY 190
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTAL 82
+SPLH AA + + V L L +DV +N G+T L
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 68.9 bits (167), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ A R G E ++L+ + G +PLH AA +GH EIV +LL++GAD
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
VN+ + G+T L A GH E+V+ LL + +V D G+TA + NG+
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF-GKTAFDISIDNGN 125
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L A G ++ V +L+ NGADVN+ + G T L A + GH E+V+ LL +V
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV 132
+D + GRT LH AA GH+ + +++
Sbjct: 74 NASD-IWGRTPLHLAATVGHLEIVEVLL 100
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN D G+T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW----------GRTPLHLAAT 89
Query: 231 GGNLKCCQVLLSRGA 245
G+L+ +VLL GA
Sbjct: 90 VGHLEIVEVLLEYGA 104
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PLH AA GH EIV +LLE GADVN+++ G+TA + G+ ++ + L
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 35.8 bits (81), Expect = 0.057, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
A G D V++L+ A+V+A MD AG TPLH AA G+L+ +VLL G
Sbjct: 21 ATRAGQDDEVRILMANGADVNA--------MD--DAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 245 ASRMSLNCNGWLPLDVARMWG 265
A + + G PL +A G
Sbjct: 71 ADVNASDIWGRTPLHLAATVG 91
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 68.9 bits (167), Expect = 6e-12, Method: Composition-based stats.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N GL +PLH AA H EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNAEDKVGL-TPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
VN+ + G+T L YGH E+V+ LL +V D G+TA + NG+
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGN 125
Score = 51.6 bits (122), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ + G T L A H E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV 132
D + G T LH A+ GH+ + +++
Sbjct: 74 NAIDAI-GETPLHLVAMYGHLEIVEVLL 100
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 10/75 (13%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN G+T LH+AA+N + + V++LL A+V+A+ D I G TPLH A
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI--------DAI--GETPLHLVAM 89
Query: 231 GGNLKCCQVLLSRGA 245
G+L+ +VLL GA
Sbjct: 90 YGHLEIVEVLLKHGA 104
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PLH A GH EIV +LL++GADVN+++ G+TA + G+ ++ + L
Sbjct: 82 TPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
AA G D V++L+ A+V+A G TPLH AA +L+ +VLL G
Sbjct: 21 AARAGQDDEVRILMANGADVNAED----------KVGLTPLHLAAMNDHLEIVEVLLKNG 70
Query: 245 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
A +++ G PL + M+G +E LL +D
Sbjct: 71 ADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD 105
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 68.9 bits (167), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ A R G E ++L+ + G +PLH AA +GH EIV +LL++GAD
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
VN+ + G+T L A GH E+V+ LL + +V D G+TA + NG+
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF-GKTAFDISIDNGN 125
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L A G ++ V +L+ NGADVN+ + G T L A + GH E+V+ LL +V
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV 132
+D GRT LH AA GH+ + +++
Sbjct: 74 NASDSW-GRTPLHLAATVGHLEIVEVLL 100
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN D G+T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD----------SWGRTPLHLAAT 89
Query: 231 GGNLKCCQVLLSRGA 245
G+L+ +VLL GA
Sbjct: 90 VGHLEIVEVLLEYGA 104
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AA+ G ++LL + ++G +PLH AA GH EIV +LLE GADVN+++
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDSWG--RTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Query: 77 CGQTALMQACRYGHWEVVQTL 97
G+TA + G+ ++ + L
Sbjct: 112 FGKTAFDISIDNGNEDLAEIL 132
Score = 35.8 bits (81), Expect = 0.052, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
A G D V++L+ A+V+A MD AG TPLH AA G+L+ +VLL G
Sbjct: 21 ATRAGQDDEVRILMANGADVNA--------MD--DAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 245 ASRMSLNCNGWLPLDVARMWG 265
A + + G PL +A G
Sbjct: 71 ADVNASDSWGRTPLHLAATVG 91
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G N+PLH AA H EIV +LL++GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKG--NTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
VN+ + G T L A +GH E+V+ LL +V D G+TA + NG+
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGN 125
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ + G T L A Y H E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV 132
D G T LH AA+ GH+ + +++
Sbjct: 74 NAHDN-DGSTPLHLAALFGHLEIVEVLL 100
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
++PLH AA GH EIV +LL++GADVN+++ G+TA + G+ ++ + L
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 35.4 bits (80), Expect = 0.085, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
G+TPLH AA +L+ +VLL GA + + +G PL +A ++G +E LL +D
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 34/136 (25%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
L++A R G + V+ L+ +V D G T LH AA H+ + +++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDR-KGNTPLHLAADYDHLEIVEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
K D VN + G T LH+AAL G+ + V++LL
Sbjct: 68 -----------------KHGAD-------VNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Query: 202 ANVSAVTFHYGTSMDL 217
A+V+A T+ D+
Sbjct: 104 ADVNAQDKFGKTAFDI 119
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 65.9 bits (159), Expect = 5e-11, Method: Composition-based stats.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E + +L N + + G ++PLH AA GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGQDDEVR-ILTANGADVNANDYWG-HTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
VN+ G+T L A H E+V+ LL +V D G+TA + NG+
Sbjct: 73 VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGN 125
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L NGADVN+ +Y G T L A GH E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV 132
A +GRT LH AA H+ + +++
Sbjct: 74 N-ATGNTGRTPLHLAAWADHLEIVEVLL 100
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PLH AA H EIV +LL++GADVN+++ G+TA + G+ ++ + L
Sbjct: 82 TPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 36.6 bits (83), Expect = 0.033, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW--LEPLLAPSSD 278
G TPLH AA G+L+ +VLL GA + G PL +A W H +E LL +D
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLA-AWADHLEIVEVLLKHGAD 105
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 65.5 bits (158), Expect = 6e-11, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 4 SFGCSASGERLVSAARDGDFVEAKML-----LDCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
+ G S + +L+ AA+ GD K L ++C + ST PLHFAA
Sbjct: 2 AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST------PLHFAAGYNRV 55
Query: 59 EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF 118
+V LL++GADV++++ G L AC YGH+EV + L+ V AD L T LH
Sbjct: 56 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHE 114
Query: 119 AAVNGHVRCIRLVV 132
AA G +L++
Sbjct: 115 AAAKGKYEICKLLL 128
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
V+ GG+ LH A G+++ +LL+ A V+ TPLH AA
Sbjct: 68 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW----------KFTPLHEAAA 117
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
G + C++LL GA N +G PLD+ +
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTAL 82
+PLH AAAKG EI LLL++GAD +N G T L
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 43 GGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRC 102
GGL PLH A + GH E+ LL+++GA VN + T L +A G +E+ + LL
Sbjct: 74 GGL-VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132
Query: 103 NVTRAD 108
+ T+ +
Sbjct: 133 DPTKKN 138
Score = 35.0 bits (79), Expect = 0.092, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 216 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
D+ G STPLHFAA + + LL GA + + G +PL A +G + + LL
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 94
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 65.1 bits (157), Expect = 9e-11, Method: Composition-based stats.
Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 6 GCSASGERLVSAARDGDFVEAKML-----LDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
G S + +L+ AA+ GD K L ++C + ST PLHFAA +
Sbjct: 6 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST------PLHFAAGYNRVSV 59
Query: 61 VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
V LL++GADV++++ G L AC YGH+EV + L+ V AD L T LH AA
Sbjct: 60 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHEAA 118
Query: 121 VNGHVRCIRLVV 132
G +L++
Sbjct: 119 AKGKYEICKLLL 130
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
V+ GG+ LH A G+++ +LL+ A V+ TPLH AA
Sbjct: 70 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW----------KFTPLHEAAA 119
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
G + C++LL GA N +G PLD+ +
Sbjct: 120 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTAL 82
+PLH AAAKG EI LLL++GAD +N G T L
Sbjct: 112 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 43 GGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRC 102
GGL PLH A + GH E+ LL+++GA VN + T L +A G +E+ + LL
Sbjct: 76 GGL-VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
Query: 103 NVTRAD 108
+ T+ +
Sbjct: 135 DPTKKN 140
Score = 35.0 bits (79), Expect = 0.093, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 216 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
D+ G STPLHFAA + + LL GA + + G +PL A +G + + LL
Sbjct: 39 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 96
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 65.1 bits (157), Expect = 9e-11, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
N+PLH AA GH E V LL GADVN+R+ G T L A + GH E+V+ LL +V
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVA 133
A G T H A NGH ++L+ A
Sbjct: 70 -ARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Score = 62.4 bits (150), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/96 (41%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 2 GNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIV 61
G+ +G L +AA++G E K LL + S G N+PLH AA GH EIV
Sbjct: 1 GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG--NTPLHLAAKNGHAEIV 58
Query: 62 ALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
LLL GADVN+R+ G T A + GH E+V+ L
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
G T LH AA NG+ + V+ LL A+V+A S D G+TPLH AA G+ +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNA------RSKD----GNTPLHLAAKNGHAEIV 58
Query: 238 QVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
++LL++GA + + +G P +A+ G H + LL
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AA++G K+LL + S G N+P H A GH+EIV LL GADVN+R++
Sbjct: 49 AAKNGHAEIVKLLLAKGADVNARSKDG--NTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN + G T LH+AA NG+ + V+LLL A+V+A S D G+TP H A
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA------RSKD----GNTPEHLAKK 84
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGW 255
G+ + ++L ++GA +N W
Sbjct: 85 NGHHEIVKLLDAKGA---DVNARSW 106
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 34/129 (26%)
Query: 78 GQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP 137
G T L A + GH E V+ LL +V A G T LH AA NGH ++L++A
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLA---- 63
Query: 138 SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 197
+G + +SK G T H+A NG+ + V+LL
Sbjct: 64 --------------KGADVNARSK---------------DGNTPEHLAKKNGHHEIVKLL 94
Query: 198 LDLHANVSA 206
A+V+A
Sbjct: 95 DAKGADVNA 103
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
G+TPLH AA G+ + + LLS+GA + + +G PL +A G ++ LLA +D
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + +G +PL+ A A GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYG--LTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
VN+ + G T L A GH E+ + LL +V D G+TA + NG+
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF-GKTAFDISIGNGN 125
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+++ G T L A +GH E+V+ LL +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHV 125
D + G T LH AA GH+
Sbjct: 74 NAVDAI-GFTPLHLAAFIGHL 93
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN + G+T L++A +G+ + V++LL A+V+AV D IG TPLH AA
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV--------DAIGF--TPLHLAAF 89
Query: 231 GGNLKCCQVLLSRGA 245
G+L+ +VLL GA
Sbjct: 90 IGHLEIAEVLLKHGA 104
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PLH AA GH EI +LL++GADVN+++ G+TA + G+ ++ + L
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
AA G D V++L+ A+V+A + G TPL+ A G+L+ +VLL G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEY----------GLTPLYLATAHGHLEIVEVLLKNG 70
Query: 245 ASRMSLNCNGWLPLDVARMWG 265
A +++ G+ PL +A G
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIG 91
Score = 32.7 bits (73), Expect = 0.43, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 35/145 (24%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
L++A R G + V+ L+ +V D G T L+ A +GH+ + +++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEY-GLTPLYLATAHGHLEIVEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
K+ D +A+ G T LH+AA G+ + ++LL
Sbjct: 68 -----------------KNGADVNAVDAI-------GFTPLHLAAFIGHLEIAEVLLKHG 103
Query: 202 ANVSAVTFHYGTSMDL-IGAGSTPL 225
A+V+A T+ D+ IG G+ L
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDL 128
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N GL +PLH AA GH EIV +LL+ GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNALDEDGL-TPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
VN+ + G T L A GH E+V+ LL +V D G+TA + NG+
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGN 125
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+ + G T L A + GH E+V+ LL + +V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV 132
D G T LH AA+ GH+ + +++
Sbjct: 74 NAEDNF-GITPLHLAAIRGHLEIVEVLL 100
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN + G+T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED----------NFGITPLHLAAI 89
Query: 231 GGNLKCCQVLLSRGA 245
G+L+ +VLL GA
Sbjct: 90 RGHLEIVEVLLKHGA 104
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+PLH AA +GH EIV +LL++GADVN+++ G+TA + G+ ++ + L
Sbjct: 82 TPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 34/136 (25%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
L++A R G + V+ L+ +V D G T LH AA GH+ + +++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDE-DGLTPLHLAAQLGHLEIVEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
K D +A F GIT LH+AA+ G+ + V++LL
Sbjct: 68 -----------------KYGADVNAEDNF-------GITPLHLAAIRGHLEIVEVLLKHG 103
Query: 202 ANVSAVTFHYGTSMDL 217
A+V+A T+ D+
Sbjct: 104 ADVNAQDKFGKTAFDI 119
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
AA G D V++L+ A+V+A L G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGQDDEVRILMANGADVNA----------LDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 245 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
A + + G PL +A + G +E LL +D
Sbjct: 71 ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD 105
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 49 LHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRAD 108
LH A+ KG V LL+NG+D N +++ G T L +AC +GH +VV+ LL + V
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 109 YLSGRTALHFAAVNGHVRCIRLVVA 133
Y + LH AA NGHV ++L+++
Sbjct: 74 Y-QNDSPLHDAAKNGHVDIVKLLLS 97
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 43/148 (29%)
Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
G T LH A++ G + PSV + + N G +VK
Sbjct: 10 GETLLHIASIKGDI-----------PSVEYLLQN-------GSDPNVKDH---------- 41
Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
G T LH A +G+ V+LLL A V+ + +PLH AA
Sbjct: 42 -----AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ----------NDSPLHDAAKN 86
Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLD 259
G++ ++LLS GASR ++N G P+D
Sbjct: 87 GHVDIVKLLLSYGASRNAVNIFGLRPVD 114
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF 100
+PLH A GH ++V LLL++ A VN+ Y + L A + GH ++V+ LL +
Sbjct: 45 TPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF 100
+SPLH AA GH +IV LLL GA N+ N G ++ Y E +++LLL
Sbjct: 77 DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG----LRPVDYTDDESMKSLLLL 127
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
A + G F K LLD N K G N+PL +A + GH+E+VALLL++GA +N+ N
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSG--NTPLIYACSGGHHELVALLLQHGASINASNN 183
Query: 77 CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV 136
G TAL +A H VV+ LLL +V + RTA+ A N + + VV V
Sbjct: 184 KGNTALHEAVIEKHVFVVELLLLHGASVQVLNK-RQRTAVDCAEQNSKIMELLQVVPSCV 242
Query: 137 PSVPFEVMNTQIEGDRGDGSSVK 159
S ++ E DR + +VK
Sbjct: 243 AS-----LDDVAETDRKEYVTVK 260
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 34/171 (19%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
+SPLH AA G +++ LLL++GA+ +RN L AC+ GH++VV+ LL
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146
Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
+ D LSG T L +A GH + L++ G+S
Sbjct: 147 KKD-LSGNTPLIYACSGGHHELVALLLQ--------------------HGAS-------- 177
Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMD 216
+N + + G TALH A + + V+LLL A+V + T++D
Sbjct: 178 -----INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVD 223
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN + G + LH+AAL+G D + LLL AN A + PLH A
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARN----------ADQAVPLHLACQ 128
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
G+ + + LL A + +G PL A G H L LL
Sbjct: 129 QGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 68/172 (39%), Gaps = 29/172 (16%)
Query: 103 NVTRADYLSGRTALHFAAVNGHVRCIRLVVA--------DFVPSVPFEVMNTQIEGDRGD 154
NVT D G + LH AA++G I L++ + +VP + Q G
Sbjct: 80 NVTSQD---GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQ-----GH 131
Query: 155 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 214
VK D +A NK G T L A G+ + V LLL A+++A
Sbjct: 132 FQVVKCLLDSNAKP---NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN------ 182
Query: 215 MDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 266
G+T LH A ++ ++LL GAS LN +D A +
Sbjct: 183 ----NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 104/233 (44%), Gaps = 38/233 (16%)
Query: 56 GHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTA 115
G E V LLE GAD+N N G TAL QAC + ++V+ L+ N+ + D G
Sbjct: 51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN-EGWIP 109
Query: 116 LHFAAVNGHVRCIRLVVAD--FVPSV------PFEV-------------MNTQ---IEGD 151
LH AA G++ +++ V +V P ++ +N Q IE
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA 169
Query: 152 RGDGSSVKSKCDQSAL-SKFVN--KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT 208
R + + + + L S +N + A G TALH+AA GY + ++LL+ +V+
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD 229
Query: 209 FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
+ G TPLH AA G + C++L+ ++N G DVA
Sbjct: 230 YD----------GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 15 VSAARDGDFVEAKMLLDCNPCL-------AKYSTFGGLNSPLHFAAAKGHNEIVALLLEN 67
+ AAR + E ML D L +++ GG + LH AAAKG+ E++ LL++
Sbjct: 166 IEAARKEE--ERIMLRDARQWLNSGHINDVRHAKSGG--TALHVAAAKGYTEVLKLLIQA 221
Query: 68 GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA 119
DVN ++Y G T L A +G E + L+ C++ + + G+TA A
Sbjct: 222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV-GQTAFDVA 272
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 37/139 (26%)
Query: 30 LDCNPCLAKYSTFGGLNS---------PLHFAAAKGHNEIVALLLENGADVNSRNYCGQT 80
+D N + K+ G N PLH AA+ G+ +I L+ GA V + N G T
Sbjct: 82 IDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT 141
Query: 81 AL----------------------MQACRYGHWEVV-----QTLLLFRCNVTRADYLSGR 113
L ++A R ++ Q L N R SG
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH-AKSGG 200
Query: 114 TALHFAAVNGHVRCIRLVV 132
TALH AA G+ ++L++
Sbjct: 201 TALHVAAAKGYTEVLKLLI 219
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ A ++T SPLH AA GH +LL G
Sbjct: 3 GKKLLEAARAGQDDEVRILMANG---APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
++R +T L A GH +V+ LL +V D L TALH+A + H + L
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK-MTALHWATEHNHQEVVEL 118
Query: 131 VV 132
++
Sbjct: 119 LI 120
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV-T 105
+PLH AA++GH IV +LL++GADVN+++ TAL A + H EVV+ L+ + +V T
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128
Query: 106 RADYLSGRTALHFAAVNGH 124
++ + +TA + NG+
Sbjct: 129 QSKFC--KTAFDISIDNGN 145
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
G + LH+AA G+F ++LL + V+ T +D TPLH AA G+
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLR-----AGVSRDARTKVD-----RTPLHMAASEGHANIV 83
Query: 238 QVLLSRGASRMSLNCNGWLPLDVARMWGRHW 268
+VLL GA +N D+ +M HW
Sbjct: 84 EVLLKHGA---DVNAK-----DMLKMTALHW 106
Score = 32.7 bits (73), Expect = 0.45, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
+ LH+A H E+V LL++ GADV++++ +TA + G+ ++ + L
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
G++PLH AA G+ +VLL G SR + PL +A G + +E LL +D
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 42 FGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR 101
F G +PL ++ G++E+ LLE+GA+VN RN G+T L+ A +YG E+V+ LL
Sbjct: 99 FSG-KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157
Query: 102 CNVTRADYLSGRTALHFAAVNGHVRCIRL 130
+++ D L+G TA A + G I++
Sbjct: 158 ADISARD-LTGLTAEASARIFGRQEVIKI 185
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 60 IVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA 119
I LL G++VN++++ G+T LM + +G+ E+ LL NV + L G T L A
Sbjct: 83 IAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRN-LEGETPLIVA 141
Query: 120 AVNGHVRCIR 129
+ G ++
Sbjct: 142 SKYGRSEIVK 151
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Query: 164 QSALSKFV---NKAADGGI---TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
++A+ K V +K D I TAL A N + LL +NV+ F
Sbjct: 48 ENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-------- 99
Query: 218 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPS 276
+G TPL ++ G + LL GA+ N G PL VA +GR ++ LL
Sbjct: 100 --SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157
Query: 277 SD 278
+D
Sbjct: 158 AD 159
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PL A G + L+EN + ++ G TAL+ A + + + LL NV
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 107 ADYLSGRTALHFAAVNGH 124
D+ SG+T L ++ + G+
Sbjct: 97 KDF-SGKTPLMWSIIFGY 113
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 112/275 (40%), Gaps = 65/275 (23%)
Query: 7 CSASGER--------LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
S+SG R L+ A ++ D + LL+ + GG +PLH A
Sbjct: 14 TSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRE 72
Query: 59 EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF 118
+IV LLL +GAD R G T + A G ++++ L +V D+ G TA
Sbjct: 73 DIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFY-GFTAFME 131
Query: 119 AAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSV--KSKCDQSALSKFVNKAAD 176
AAV G V+ ++ + RG ++ K+K DQ L K
Sbjct: 132 AAVYGKVKALKFLYK------------------RGANVNLRRKTKEDQERLRK------- 166
Query: 177 GGITALHMAALNGYFDCVQLLLD-----------------LHA-------NVSAVT---F 209
GG TAL AA G+ + +++LLD +HA +V A+T
Sbjct: 167 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 226
Query: 210 HYGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSR 243
+G +++ G G TPL A +L Q LL +
Sbjct: 227 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 114/283 (40%), Gaps = 42/283 (14%)
Query: 22 DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTA 81
D VE + +P L K + +P AA G +++ L L GADVN ++ G TA
Sbjct: 73 DIVELLLRHGADPVLRKKNGA----TPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTA 128
Query: 82 LMQACRYGHWEVVQTLLLFRCNV-----TRADY----LSGRTALHFAAVNGHVRCIRLVV 132
M+A YG + ++ L NV T+ D G TAL AA GHV +++++
Sbjct: 129 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 188
Query: 133 ADFVPSVPF-------EVMNTQIEGDRGDGSSVKS-KCDQSALSKFVNKAADGGITALHM 184
+ V +++ + D D ++ D A VN + G T L +
Sbjct: 189 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA---DVNVRGERGKTPLIL 245
Query: 185 AALNGYFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243
A + VQ LL+ H ++ D G T L A K ++L R
Sbjct: 246 AVEKKHLGLVQRLLEQEHIEIN----------DTDSDGKTALLLAVELKLKKIAELLCKR 295
Query: 244 GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHP 286
GA S +C G L + R + ++ LL S FHP
Sbjct: 296 GA---STDC-GDLVMTARRNYDHSLVKVLL---SHGAKEDFHP 331
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 46/217 (21%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+ LH+A + GH EIV LL+ G VN ++ G + L A G E+V+ LL+ +V
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 107 ADYLSGRTALHFAA-VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
+ +G T LH+AA N H + L +EG G K D
Sbjct: 102 VNQ-NGCTPLHYAASKNRHEIAVML-----------------LEG--GANPDAKDHYDA- 140
Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 225
TA+H AA G V +LL F+ ++ G+TPL
Sbjct: 141 --------------TAMHRAAAKGNLKMVHILL----------FYKASTNIQDTEGNTPL 176
Query: 226 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
H A ++ + L+++GAS N PL VA+
Sbjct: 177 HLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
TALH A G+ + V+ LL L V+ D AG +PLH AA G + +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKA 91
Query: 240 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
LL +GA ++N NG PL A RH + +L
Sbjct: 92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 46/217 (21%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+ LH+A + GH EIV LL+ G VN ++ G + L A G E+V+ LL+ +V
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 107 ADYLSGRTALHFAA-VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
+ +G T LH+AA N H + L +EG G K D
Sbjct: 102 VNQ-NGCTPLHYAASKNRHEIAVML-----------------LEG--GANPDAKDHYDA- 140
Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 225
TA+H AA G V +LL F+ ++ G+TPL
Sbjct: 141 --------------TAMHRAAAKGNLKMVHILL----------FYKASTNIQDTEGNTPL 176
Query: 226 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
H A ++ + L+++GAS N PL VA+
Sbjct: 177 HLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
TALH A G+ + V+ LL L V+ D AG +PLH AA G + +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGXDEIVKA 91
Query: 240 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
LL +GA ++N NG PL A RH + +L
Sbjct: 92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ +A G ++PLH AA GH E+V LLLE GAD
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEAGAD 64
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTL 97
VN+++ G+TA + G+ ++ + L
Sbjct: 65 VNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADV +++ G T L A R GH EVV+ LL +V
Sbjct: 6 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
Query: 105 TRADYLSGRTALHFAAVNGH 124
D G+TA + NG+
Sbjct: 66 NAQDKF-GKTAFDISIDNGN 84
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 132
L++A R G + V+ L+ +V D +G T LH AA NGH+ ++L++
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLL 59
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
G T LH+AA NG+ + V+LLL+ A+V+A T+ D+
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
AA G D V++L+ A+V+A + GSTPLH AA G+L+ ++LL G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKN----------GSTPLHLAARNGHLEVVKLLLEAG 62
Query: 245 A 245
A
Sbjct: 63 A 63
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 48/218 (22%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+ LH+A + GH EIV LL+ G VN ++ G + L A G E+V+ LL V
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 107 ADYLSGRTALHFAA-VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
+ +G T LH+AA N H + L +EG G++ +K
Sbjct: 102 VNQ-NGCTPLHYAASKNRHEIAVML-----------------LEG----GANPDAKDHYE 139
Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTP 224
A TA+H AA G + +LL +Y S ++ G+TP
Sbjct: 140 A-------------TAMHRAAAKGNLKMIHILL-----------YYKASTNIQDTEGNTP 175
Query: 225 LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
LH A ++ ++L+S+GAS N PL VA+
Sbjct: 176 LHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 130 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 189
L+V + S E + I D+ S+ ++ DQ + TALH A G
Sbjct: 8 LMVCNLAYSGKLEELKESILADK----SLATRTDQDSR------------TALHWACSAG 51
Query: 190 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 249
+ + V+ LL L V+ D AG +PLH AA G + + LL +GA +
Sbjct: 52 HTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 250 LNCNGWLPLDVARMWGRHWLEPLL 273
+N NG PL A RH + +L
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVML 125
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 48/218 (22%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+ LH+A + GH EIV LL+ G VN ++ G + L A G E+V+ LL V
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 107 ADYLSGRTALHFAA-VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
+ +G T LH+AA N H + L +EG G++ +K
Sbjct: 103 VNQ-NGCTPLHYAASKNRHEIAVML-----------------LEG----GANPDAKDHYE 140
Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTP 224
A TA+H AA G + +LL +Y S ++ G+TP
Sbjct: 141 A-------------TAMHRAAAKGNLKMIHILL-----------YYKASTNIQDTEGNTP 176
Query: 225 LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
LH A ++ ++L+S+GAS N PL VA+
Sbjct: 177 LHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 130 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 189
L+V + S E + I D+ S+ ++ DQ + TALH A G
Sbjct: 9 LMVCNLAYSGKLEELKESILADK----SLATRTDQDSR------------TALHWACSAG 52
Query: 190 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 249
+ + V+ LL L V+ D AG +PLH AA G + + LL +GA +
Sbjct: 53 HTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 250 LNCNGWLPLDVARMWGRHWLEPLL 273
+N NG PL A RH + +L
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVML 126
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 107/260 (41%), Gaps = 57/260 (21%)
Query: 14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
L+ A ++ D + LL+ + GG +PLH A +IV LLL +GAD
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 74 RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA 133
R G T + A G ++++ L +V D+ G TA AAV G V+ ++ +
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY-GFTAFMEAAVYGKVKALKFLYK 126
Query: 134 DFVPSVPFEVMNTQIEGDRGDGSSV--KSKCDQSALSKFVNKAADGGITALHMAALNGYF 191
RG ++ K+K DQ L K GG TAL AA G+
Sbjct: 127 ------------------RGANVNLRRKTKEDQERLRK-------GGATALMDAAEKGHV 161
Query: 192 DCVQLLLD-----------------LHA-------NVSAVT---FHYGTSMDLIGA-GST 223
+ +++LLD +HA +V A+T +G +++ G G T
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221
Query: 224 PLHFAACGGNLKCCQVLLSR 243
PL A +L Q LL +
Sbjct: 222 PLILAVEKKHLGLVQRLLEQ 241
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 176 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 235
+GG T LH A D V+LLL H + G+TP AA G++K
Sbjct: 37 EGGWTPLHNAVQMSREDIVELLL----------RHGADPVLRKKNGATPFLLAAIAGSVK 86
Query: 236 CCQVLLSRGASRMSLNCNGWLPLDVARMWGR 266
++ LS+GA + G+ A ++G+
Sbjct: 87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PL +AAA G +V LL+NGAD ++AL AC G+ ++V+ LL +V
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV 132
D+ +G T L +A HV+C+++++
Sbjct: 96 YDW-NGGTPLLYAVHGNHVKCVKMLL 120
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 177 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 236
G +AL +A GY D V++LLD +V+ ++ G TPL +A G ++KC
Sbjct: 66 GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKC 115
Query: 237 CQVLLSRGASRMSLNCNGWLPLDVARMWG 265
++LL GA +G+ +D+A G
Sbjct: 116 VKMLLESGADPTIETDSGYNSMDLAVALG 144
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLL 98
G S L A +KG+ +IV +LL+ G DVN ++ G T L+ A H + V+ LL
Sbjct: 66 GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 120
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 27 KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQAC 86
KMLLDC + +Y GG +PL +A H + V +LLE+GAD G ++ A
Sbjct: 84 KMLLDCGVDVNEYDWNGG--TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 141
Query: 87 RYGHWEVVQTL 97
G+ V Q +
Sbjct: 142 ALGYRSVQQVI 152
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PL +AAA G +V LL+NGAD ++AL AC G+ ++V+ LL +V
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV 132
D+ +G T L +A HV+C+++++
Sbjct: 98 YDW-NGGTPLLYAVHGNHVKCVKMLL 122
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 177 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 236
G +AL +A GY D V++LLD +V+ ++ G TPL +A G ++KC
Sbjct: 68 GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKC 117
Query: 237 CQVLLSRGASRMSLNCNGWLPLDVARMWG 265
++LL GA +G+ +D+A G
Sbjct: 118 VKMLLESGADPTIETDSGYNSMDLAVALG 146
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLL 98
G S L A +KG+ +IV +LL+ G DVN ++ G T L+ A H + V+ LL
Sbjct: 68 GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 27 KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQAC 86
KMLLDC + +Y GG +PL +A H + V +LLE+GAD G ++ A
Sbjct: 86 KMLLDCGVDVNEYDWNGG--TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 143
Query: 87 RYGHWEVVQTL 97
G+ V Q +
Sbjct: 144 ALGYRSVQQVI 154
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ +A G ++PLH AA GH E+V LLLE GAD
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEAGAD 82
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTL 97
V +++ G+TA + G+ ++ + L
Sbjct: 83 VXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADV +++ G T L A R GH EVV+ LL +V
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 105 TRADYLSGRTALHFAAVNGH 124
D G+TA + NG+
Sbjct: 84 XAQDKF-GKTAFDISIDNGN 102
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 132
L++A R G + V+ L+ +V D +G T LH AA NGH+ ++L++
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLL 77
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
G T LH+AA NG+ + V+LLL+ A+V A T+ D+
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
AA G D V++L+ A+V+A + GSTPLH AA G+L+ ++LL G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKN----------GSTPLHLAARNGHLEVVKLLLEAG 80
Query: 245 ASRMSLNCNGWLPLDVA 261
A + + G D++
Sbjct: 81 ADVXAQDKFGKTAFDIS 97
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADV 71
+ + + R+G+ V ++ LD G SPLH+A +G + +V +L+ GA +
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF-SPLHWACREGRSAVVEMLIMRGARI 65
Query: 72 NSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLV 131
N N T L A +GH ++VQ LL ++ ++ + G LH+A G + +
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDL 124
Query: 132 VAD 134
VA+
Sbjct: 125 VAN 127
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
+N G T LH+AA +G+ D VQ LL A+++AV H G+ PLH+A
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHYACF 114
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
G + + L++ GA N G +P+D A+
Sbjct: 115 WGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 154 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGT 213
+G++V + +N+ D G + LH A G V++L+ G
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-----------MRGA 63
Query: 214 SMDLIGAGS-TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 266
++++ G TPLH AA G+ Q LL A ++N +G +PL A WG+
Sbjct: 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 117
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADV 71
+ + + R+G+ V ++ LD G SPLH+A +G + +V +L+ GA +
Sbjct: 2 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF-SPLHWACREGRSAVVEMLIMRGARI 60
Query: 72 NSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLV 131
N N T L A +GH ++VQ LL ++ ++ + G LH+A G + +
Sbjct: 61 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDL 119
Query: 132 VAD 134
VA+
Sbjct: 120 VAN 122
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
+N G T LH+AA +G+ D VQ LL A+++AV H G+ PLH+A
Sbjct: 60 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHYACF 109
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
G + + L++ GA N G +P+D A+
Sbjct: 110 WGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 154 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGT 213
+G++V + +N+ D G + LH A G V++L+ G
Sbjct: 10 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-----------MRGA 58
Query: 214 SMDLIGAGS-TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 266
++++ G TPLH AA G+ Q LL A ++N +G +PL A WG+
Sbjct: 59 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 112
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
SPLH A GH V +LL++GA VN T L AC G W+ V LL +V
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVA 133
L+ + +H AA GHV C+ ++A
Sbjct: 154 ESDLA--SPIHEAARRGHVECVNSLIA 178
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 76/201 (37%), Gaps = 49/201 (24%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF--RCNV 104
SP+H AA GH + L+ G VN + L +AC GH V+ LL + N
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
AD+ T L A V+G C+ L++ G+SV+ + D
Sbjct: 121 VTADW---HTPLFNACVSGSWDCVNLLLQ--------------------HGASVQPESDL 157
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224
+ + +H AA G+ +CV L+ N+ H G TP
Sbjct: 158 A--------------SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG----------TP 193
Query: 225 LHFAACGGNLKCCQVLLSRGA 245
L+ A C + LL GA
Sbjct: 194 LYLACENQQRACVKKLLESGA 214
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN ++ LH A L G+ CV++LL A V+ VT + TPL A
Sbjct: 85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW----------HTPLFNACV 134
Query: 231 GGNLKCCQVLLSRGAS 246
G+ C +LL GAS
Sbjct: 135 SGSWDCVNLLLQHGAS 150
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
++PL A G + V LLL++GA V + + + +A R GH E V +L+ + N+
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNID 184
Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVV 132
G T L+ A N C++ ++
Sbjct: 185 HKISHLG-TPLYLACENQQRACVKKLL 210
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
+ +H AA++G+ ++ L+ V+ +T + +PLH A GG+L C ++
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADH----------VSPLHEACLGGHLSCVKI 110
Query: 240 LLSRGASRMSLNCNGWLPL 258
LL GA + + PL
Sbjct: 111 LLKHGAQVNGVTADWHTPL 129
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L SP+H AA +GH E V L+ G +++ + T L AC V+ LL +V
Sbjct: 157 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 216
Query: 105 TRA 107
+
Sbjct: 217 NQG 219
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ 79
G +SPLH E+ LL++ GAD ++N G+
Sbjct: 221 GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGK 256
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 85/214 (39%), Gaps = 46/214 (21%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
SPLH A GH V +LL++GA VN T L AC G W+ V LL +V
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 97
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
L+ + +H AA GHV C+ ++A G ++ K
Sbjct: 98 ESDLA--SPIHEAARRGHVECVNSLIA--------------------YGGNIDHKISHLG 135
Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226
T L++A N CV+ LL+ A+V+ G D +PLH
Sbjct: 136 -------------TPLYLACENQQRACVKKLLESGADVN-----QGKGQD------SPLH 171
Query: 227 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 260
A + + +L+ GA + N G P+++
Sbjct: 172 AVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 76/201 (37%), Gaps = 49/201 (24%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF--RCNV 104
SP+H AA GH + L+ G VN + L +AC GH V+ LL + N
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
AD+ T L A V+G C+ L++ G+SV+ + D
Sbjct: 65 VTADW---HTPLFNACVSGSWDCVNLLLQ--------------------HGASVQPESDL 101
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224
+ + +H AA G+ +CV L+ N+ H G TP
Sbjct: 102 A--------------SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG----------TP 137
Query: 225 LHFAACGGNLKCCQVLLSRGA 245
L+ A C + LL GA
Sbjct: 138 LYLACENQQRACVKKLLESGA 158
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN ++ LH A L G+ CV++LL A V+ VT + TPL A
Sbjct: 29 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW----------HTPLFNACV 78
Query: 231 GGNLKCCQVLLSRGAS 246
G+ C +LL GAS
Sbjct: 79 SGSWDCVNLLLQHGAS 94
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
++PL A G + V LLL++GA V + + + +A R GH E V +L+ + N+
Sbjct: 70 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNID 128
Query: 106 RADYLSGRTALHFAAVNGHVRCIR 129
G T L+ A N C++
Sbjct: 129 HKISHLG-TPLYLACENQQRACVK 151
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 182 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS-TPLHFAACGGNLKCCQVL 240
+H AA++G+ ++ L+ G ++++I A +PLH A GG+L C ++L
Sbjct: 7 MHEAAIHGHQLSLRNLIS-----------QGWAVNIITADHVSPLHEACLGGHLSCVKIL 55
Query: 241 LSRGASRMSLNCNGWLPL 258
L GA + + PL
Sbjct: 56 LKHGAQVNGVTADWHTPL 73
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ 79
G +SPLH A E+ LL++ GAD ++N G+
Sbjct: 165 GQDSPLHAVARTASEELACLLMDFGADTQAKNAEGK 200
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L SP+H AA +GH E V L+ G +++ + T L AC V+ LL +V
Sbjct: 101 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160
Query: 105 TRA 107
+
Sbjct: 161 NQG 163
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 26/229 (11%)
Query: 46 NSPLHFAAAKGH----NEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR 101
++PLH A +G+ + +V L + G +++ N QT L A VV+ L+
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 102 CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP-SVPFEVMNTQIEGDRGDGSSVKS 160
+ D G+TA H A + C+R ++ P ++ E N +G +V +
Sbjct: 70 ASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN--YDGLTALHVAVNT 126
Query: 161 KCDQSALSKFVNKAAD-------GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGT 213
+C Q + + + AD G + L A N VQLLL ANV+A +
Sbjct: 127 EC-QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY---- 181
Query: 214 SMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
+GS+ LH A+ G L + L+ GA NC+ PL VAR
Sbjct: 182 ------SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PL +AAA G +V LL+NGAD ++AL AC G+ ++V+ LL +V
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV 132
D+ +G T L +A HV+C+++++
Sbjct: 114 YDW-NGGTPLLYAVHGNHVKCVKMLL 138
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
+AL +A GY D V++LLD +V+ ++ G TPL +A G ++KC ++
Sbjct: 87 SALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKCVKM 136
Query: 240 LLSRGASRMSLNCNGWLPLDVARMWG 265
LL GA +G+ +D+A G
Sbjct: 137 LLESGADPTIETDSGYNSMDLAVALG 162
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCN 103
G S L A +KG+ +IV +LL+ G DVN ++ G T L+ A H + V+ LL +
Sbjct: 84 GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Query: 104 VTRADYLSGRTALHFAAVNGHVRCIRLVV 132
T + SG ++ A G+ R ++ V+
Sbjct: 144 PT-IETDSGYNSMDLAVALGY-RSVQQVI 170
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 27 KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQAC 86
KMLLDC + +Y GG +PL +A H + V +LLE+GAD G ++ A
Sbjct: 102 KMLLDCGVDVNEYDWNGG--TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 159
Query: 87 RYGHWEVVQTL 97
G+ V Q +
Sbjct: 160 ALGYRSVQQVI 170
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
L L AA G ++ V +L+ NGADVN+++ G T L A R GH E+V+ LL +V
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 105 TRADYLSGRTALHFAAVNGH 124
D G+TA + NG+
Sbjct: 62 NAQDKF-GKTAFDISIDNGN 80
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G +PLH AA +GH EIV +LL+ GAD
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTL 97
VN+++ G+TA + G+ ++ + L
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 221 GSTPLHFAACGGNLKCCQVLLSRGA 245
G TPLH AA G+L+ +VLL GA
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGA 59
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G L SAA GD + LL N + + FG + L G+ EI LL GA+
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMKL-GNPEIARRLLLRGAN 62
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
+ ++ G + A R G + +QTLL F+ +V D G LH AA GH+R +
Sbjct: 63 PDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEF 121
Query: 131 VV 132
+V
Sbjct: 122 LV 123
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
G +H AA G+ D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 238 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 273
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 40/89 (44%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
N+ +H AA G + + LLE ADVN + G L A + GH VV+ L+ +
Sbjct: 71 NAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVAD 134
G TA A + G + L+ A+
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQAN 159
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
+AL +A+ GY D V LLL+ +++ ++ G TPL +A G ++KC +
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLYAVRGNHVKCVEA 120
Query: 240 LLSRGASRMSLNCNGWLPLDVA 261
LL+RGA + +G+ P+D+A
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV-T 105
S L A+ G+ +IV LLLE D+N ++ G T L+ A R H + V+ LL ++ T
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130
Query: 106 RADYLSGRTALHFAAVNGHVRC--------IRLVVADFVPSVP 140
AD SG T + A G+ + ++L ++ VP+ P
Sbjct: 131 EAD--SGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PL +A+A G E V LLE GAD + ++AL A G+ ++V LL ++
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVA 133
D+ +G T L +A HV+C+ ++A
Sbjct: 98 YDW-NGGTPLLYAVRGNHVKCVEALLA 123
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
+AL +A+ GY D V LLL+ +++ ++ G TPL +A G ++KC +
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLYAVHGNHVKCVEA 120
Query: 240 LLSRGASRMSLNCNGWLPLDVA 261
LL+RGA + +G+ P+D+A
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV-T 105
S L A+ G+ +IV LLLE D+N ++ G T L+ A H + V+ LL ++ T
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTT 130
Query: 106 RADYLSGRTALHFAAVNGHVRC--------IRLVVADFVPSVP 140
AD SG T + A G+ + ++L ++ VP+ P
Sbjct: 131 EAD--SGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+PL +A+A G E V LLE GAD + ++AL A G+ ++V LL ++
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVA 133
D+ +G T L +A HV+C+ ++A
Sbjct: 98 YDW-NGGTPLLYAVHGNHVKCVEALLA 123
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G L SAA GD + LL N + + FG + L G+ EI LL GA+
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMKL-GNPEIARRLLLRGAN 62
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
+ ++ G + A R G + +QTLL F+ +V D G LH AA GH+R +
Sbjct: 63 PDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEF 121
Query: 131 VV 132
+V
Sbjct: 122 LV 123
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
G +H AA G D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 238 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 273
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQTALMQACRYGHWEVVQTL 97
N PLH AA +GH +V L+++ A +V RN+ G TA A YG EVV +
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G L SAA GD + LL N + + FG + L G+ EI LL GA+
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMKL-GNPEIARRLLLRGAN 62
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
+ ++ G + A R G + +QTLL F+ +V D G LH AA GH+R +
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEF 121
Query: 131 VV 132
+V
Sbjct: 122 LV 123
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
G +H AA G+ D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 238 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 273
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQTALMQACRYGHWEVVQTL 97
N PLH AA +GH +V L+++ A +V RN+ G TA A YG EVV +
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G L SAA GD + LL N + + FG + L G+ EI LL GA+
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMKL-GNPEIARRLLLRGAN 62
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
+ ++ G + A R G + +QTLL F+ +V D G LH AA GH+R +
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEF 121
Query: 131 VV 132
+V
Sbjct: 122 LV 123
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
G +H AA G+ D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 238 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 273
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQTALMQACRYGHWEVVQTL 97
N PLH AA +GH +V L+++ A +V RN+ G TA A YG EVV +
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF-RCN 103
+++PLH AA +G+ + L+N VN + G TAL AC GH ++V+ L
Sbjct: 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE 132
Query: 104 VTRADYLSGRTALHFAAVNGHVRCIRLVVA 133
+ + + L G TALH AA G+ ++L++A
Sbjct: 133 LNQQNKL-GDTALHAAAWKGYADIVQLLLA 161
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLL 198
+N+ G TALH AA GY D VQLLL
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQAC 86
++ LH AA KG+ +IV LLL GA + RN + A A
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXAT 181
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
VN G TAL+ A G+ D V+ L + + + G T LH AA
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLF----TQPNIELNQQNKL-----GDTALHAAAW 149
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
G Q+LL++GA N L D A
Sbjct: 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDXA 180
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 35/172 (20%)
Query: 79 QTALMQACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP 137
++ L+ A + + + LL F C V + + G TALH AA+ ++ +V+ + P
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM-GETALHIAALYDNLEA-AMVLMEAAP 61
Query: 138 SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 197
+ FE M +++ G TALH+A +N + V+ L
Sbjct: 62 ELVFEPMTSELYE---------------------------GQTALHIAVINQNVNLVRAL 94
Query: 198 LDLHANVSA----VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
L A+VSA FHY +LI G PL FAAC G+ + ++L+ GA
Sbjct: 95 LARGASVSARATGSVFHY-RPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA 145
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 47 SPLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQTALMQACRYGHWEVVQTL------LL 99
SPL AA + + ++ LL+ G +V+ R G+TAL A Y + E L L+
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 100 FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA 133
F ++ G+TALH A +N +V +R ++A
Sbjct: 65 FEP--MTSELYEGQTALHIAVINQNVNLVRALLA 96
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTAL 82
PL FAA G EIV LL+E+GAD+ +++ G T L
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 163 DQSALSKF-------VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM 215
D ALSK V++ G TALH+AAL +D ++ + L + F TS
Sbjct: 15 DVQALSKLLKFEGCEVHQRGAMGETALHIAAL---YDNLEAAMVLMEAAPELVFEPMTSE 71
Query: 216 DLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246
+ G T LH A N+ + LL+RGAS
Sbjct: 72 --LYEGQTALHIAVINQNVNLVRALLARGAS 100
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 84/227 (37%), Gaps = 43/227 (18%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+ LH AA + LL+ GAD NS++ G+T L A V Q LL R
Sbjct: 53 TSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLN 112
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
A G T L AA RL + V + + + D
Sbjct: 113 ARMHDGTTPLILAA--------RLAIEGMVEDL------------------ITADAD--- 143
Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226
+N A + G TALH AA + V +LL HAN A TPL
Sbjct: 144 ----INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD----------DKDETPLF 189
Query: 227 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
AA G+ + + LL A+R + LP DVA H + LL
Sbjct: 190 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G L SAA GD + LL N + + FG + L G+ EI LL GA+
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMKL-GNPEIARRLLLRGAN 62
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
+ ++ G + A R G + +QTLL + +V D G LH AA GH+R +
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDN-EGNLPLHLAAKEGHLRVVEF 121
Query: 131 VV 132
+V
Sbjct: 122 LV 123
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
G +H AA G+ D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 238 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 273
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 28 MLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87
+L NP L + F + +H AA G + + LLEN ADVN + G L A +
Sbjct: 57 LLRGANPDLKDRTGF----AVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAK 112
Query: 88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVAD 134
GH VV+ L+ + G TA A + G + L+ A+
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 143 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 202
++++ +EG+ + + D +L D GITALH A G+ + V+ L+
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPN------DEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 203 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 250
NV+A G TPLH AA N++ C+ L+ GA+ ++
Sbjct: 95 NVNAAD----------SDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 52 AAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS 111
++ +G ++V ++ D + N G TAL A GH E+V+ L+ F NV AD
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-D 102
Query: 112 GRTALHFAAVNGHVRCIRLVV 132
G T LH AA +V+ + +V
Sbjct: 103 GWTPLHCAASCNNVQVCKFLV 123
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
++L G FD VQ ++ + S G T LH A C G+ + + L+ G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPN----------DEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 245 ASRMSLNCNGWLPL 258
+ + + +GW PL
Sbjct: 94 VNVNAADSDGWTPL 107
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTAL--------MQACRY 88
+ LH A GH EIV L++ G +VN+ + G T L +Q C++
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 176 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 235
D GITALH A G+ + V+ L+ NV+A G TPLH AA N++
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD----------SDGWTPLHCAASCNNVQ 117
Query: 236 CCQVLLSRGASRMSL 250
C+ L+ GA+ ++
Sbjct: 118 VCKFLVESGAAVFAM 132
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 52 AAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS 111
++ +G ++V ++ D + N G TAL A GH E+V+ L+ F NV AD
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-D 102
Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDR 152
G T LH AA +V+ + +V + Q D+
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 143
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
++L G FD VQ ++ + S G T LH A C G+ + + L+ G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPN----------DEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 245 ASRMSLNCNGWLPL 258
+ + + +GW PL
Sbjct: 94 VNVNAADSDGWTPL 107
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTAL--------MQACRY 88
+ LH A GH EIV L++ G +VN+ + G T L +Q C++
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 14 LVSAARDGDFVEAKMLL-DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
L+ AA D + K +L D + + T G N+PL+ A EI L++ GAD+N
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEG--NTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 73 SRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 132
+N + + A G E++ +L G AL AA GH+ ++L++
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 133 ADFVPSVPFE 142
D + F+
Sbjct: 127 EDGREDIDFQ 136
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 3 NSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNE--- 59
N +G +A L+ AA G K+LL+ + G + + + N+
Sbjct: 103 NRYGGNA----LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 60 -IVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF 100
IV LL+ENGAD + ++ G+TA+ A + G+ E+ + L +
Sbjct: 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 37 AKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQT 96
AK S G + L A + G ++V LL ADVN ++ G TALM AC +GH E+
Sbjct: 177 AKASQAG--QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL 234
Query: 97 LLLF-RCNVTRADYLSGRTALHFA 119
LL C+++ D G TAL A
Sbjct: 235 LLAVPSCDISLTDR-DGSTALMVA 257
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 21 GDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAA---KGHNEIVALL-LENGADVNSR-N 75
+F + LLD C G SP+ A K ++I +L L ++N++ +
Sbjct: 122 ANFPVVQQLLDSGVCKVDKQNRAGY-SPIMLTALATLKTQDDIETVLQLFRLGNINAKAS 180
Query: 76 YCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADF 135
GQTALM A +G +VV+ LL +V D G TAL A +GH L++A
Sbjct: 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDD-DGSTALMCACEHGHKEIAGLLLA-- 237
Query: 136 VPS 138
VPS
Sbjct: 238 VPS 240
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 78/177 (44%), Gaps = 35/177 (19%)
Query: 43 GGLNS-PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR 101
G LNS PLH+A +GH +V L++ GAD + + G + + A ++GH +V L+
Sbjct: 73 GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132
Query: 102 CNVTRADYLSGRTALHFAAVNGH-VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS 160
+V D +G T L +AA H V RL++ F SV GD+ +
Sbjct: 133 QDVDMMDQ-NGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNL--------GDKYHKN---- 178
Query: 161 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
TALH A L G + LLL+ ANV A +++DL
Sbjct: 179 -------------------TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 45/223 (20%)
Query: 49 LHFAAAKGHNEIVALLLENGADVNSRN-YCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
LH+AA ++V + GA V+ T L A R GH +V L+ + + +
Sbjct: 46 LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105
Query: 108 DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167
D G + +H AA GH + ++A G V DQ+
Sbjct: 106 DG-EGCSCIHLAAQFGHTSIVAYLIAK--------------------GQDV-DMMDQN-- 141
Query: 168 SKFVNKAADGGITALHMAALNGY-FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226
G+T L AA + D +LLL TF+ ++ +T LH
Sbjct: 142 ----------GMTPLMWAAYRTHSVDPTRLLL---------TFNVSVNLGDKYHKNTALH 182
Query: 227 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL 269
+A GN +LL GA+ + N G LD+A+ W+
Sbjct: 183 WAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWM 225
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 67/170 (39%), Gaps = 37/170 (21%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLL-----F 100
+PLH A EI LL G D R++ G T L AC G V L
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 101 RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS 160
++ +A +G T LH A+++G++ + L+V+ G + +
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVS------------------LGADVNAQE 147
Query: 161 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH 210
C+ G TALH+A D V LLL A+V+ VT+
Sbjct: 148 PCN--------------GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 39/208 (18%)
Query: 59 EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF 118
E++ + + A +N +N QT L A E+ + LL C+ D+ G T LH
Sbjct: 26 EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF-RGNTPLHL 84
Query: 119 AAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG 178
A G C+ V + C L + G
Sbjct: 85 ACEQG---CLASV------------------------GVLTQSCTTPHLHSILKATNYNG 117
Query: 179 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 238
T LH+A+++GY V+LL+ L A+V+A G T LH A N
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGADVNAQE---------PCNGRTALHLAVDLQNPDLVS 168
Query: 239 VLLSRGASRMSLNCNGWLPLDVARMWGR 266
+LL GA + G+ P + WGR
Sbjct: 169 LLLKCGADVNRVTYQGYSPYQLT--WGR 194
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 22 DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN------GADVNSRN 75
+ EA + C+P L + N+PLH A +G V +L ++ + + + N
Sbjct: 59 EIAEALLGAGCDPELRDFRG----NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114
Query: 76 YCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
Y G T L A +G+ +V+ L+ +V + +GRTALH A
Sbjct: 115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 17 AARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
A ++GD E K + D N T G PLH+AA G EI+ LL GAD+N
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVN------RTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
Query: 73 SRNYCGQTALMQACRYGHWEVVQTLL 98
+ + T L+ A GH V+ LL
Sbjct: 63 APDKHHITPLLSAVYEGHVSCVKLLL 88
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 153 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYG 212
GD VK D A + VN+ +GG LH AA G + ++ LL A+++A H+
Sbjct: 13 GDLDEVK---DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH- 68
Query: 213 TSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 259
TPL A G++ C ++LLS+GA + +G L+
Sbjct: 69 ---------ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 68 GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127
G DVN G+ L A G E+++ LLL ++ D T L A GHV C
Sbjct: 25 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK-HHITPLLSAVYEGHVSC 83
Query: 128 IRLVVA 133
++L+++
Sbjct: 84 VKLLLS 89
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 67/170 (39%), Gaps = 37/170 (21%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLL-----F 100
+PLH A EI LL G D R++ G T L AC G V L
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 101 RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS 160
++ +A +G T LH A+++G++ + L+V+ G + +
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVS------------------LGADVNAQE 144
Query: 161 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH 210
C+ G TALH+A D V LLL A+V+ VT+
Sbjct: 145 PCN--------------GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 180
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 39/208 (18%)
Query: 59 EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF 118
E++ + + A +N +N QT L A E+ + LL C+ D+ G T LH
Sbjct: 23 EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF-RGNTPLHL 81
Query: 119 AAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG 178
A G C+ V + C L + G
Sbjct: 82 ACEQG---CLASV------------------------GVLTQSCTTPHLHSILKATNYNG 114
Query: 179 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 238
T LH+A+++GY V+LL+ L A+V+A G T LH A N
Sbjct: 115 HTCLHLASIHGYLGIVELLVSLGADVNAQE---------PCNGRTALHLAVDLQNPDLVS 165
Query: 239 VLLSRGASRMSLNCNGWLPLDVARMWGR 266
+LL GA + G+ P + WGR
Sbjct: 166 LLLKCGADVNRVTYQGYSPYQLT--WGR 191
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 22 DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN------GADVNSRN 75
+ EA + C+P L + N+PLH A +G V +L ++ + + + N
Sbjct: 56 EIAEALLGAGCDPELRDFRG----NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 111
Query: 76 YCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
Y G T L A +G+ +V+ L+ +V + +GRTALH A
Sbjct: 112 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 156
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex
With V-1
Length = 123
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 17 AARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
A ++GD E K + D N T G PLH+AA G EI+ LL GAD+N
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVN------RTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 73 SRNYCGQTALMQACRYGHWEVVQTLL 98
+ + T L+ A GH V+ LL
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLL 93
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 153 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYG 212
GD VK D A + VN+ +GG LH AA G + ++ LL A+++A H+
Sbjct: 18 GDLDEVK---DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH- 73
Query: 213 TSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 247
TPL A G++ C ++LLS+GA +
Sbjct: 74 ---------ITPLLSAVYEGHVSCVKLLLSKGADK 99
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 68 GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127
G DVN G+ L A G E+++ LLL ++ D T L A GHV C
Sbjct: 30 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK-HHITPLLSAVYEGHVSC 88
Query: 128 IRLVVA 133
++L+++
Sbjct: 89 VKLLLS 94
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 28/189 (14%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA-AVNGH------VRCIRLVVAD 134
L QAC + VQ LL + ++ GR LH++ + H + + V D
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 135 FVPS----VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 190
P PF I G+ VKS D+ L +NK + G+T LH+A +
Sbjct: 66 DYPDDSGWTPF-----HIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 191 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 250
F+ Q L++ A+V PLH AA G+LK ++L G S ++
Sbjct: 120 FEVSQFLIENGASVRIKD----------KFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169
Query: 251 -NCNGWLPL 258
+ GW PL
Sbjct: 170 QDKQGWTPL 178
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
L A + +F + + LL P L G PLH++ + +EI + LL +VN
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 74 RNY---CGQTALMQACRYGHWEVVQTL 97
+Y G T AC G+ EVV++L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSL 91
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%)
Query: 49 LHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRAD 108
LH A K E+ L+ENGA V ++ Q L +A G ++++ L +
Sbjct: 111 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170
Query: 109 YLSGRTALHFAAVNGHVRCIRLVVADF 135
G T L A GH L+V +
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKY 197
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 28/189 (14%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA-AVNGH------VRCIRLVVAD 134
L QAC + VQ LL + ++ GR LH++ + H + + V D
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 135 FVPS----VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 190
P PF I G+ VKS D+ L +NK + G+T LH+A +
Sbjct: 66 DYPDDSGWTPF-----HIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 191 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 250
F+ Q L++ A+V PLH AA G+LK ++L G S ++
Sbjct: 120 FEVSQFLIENGASVRIKD----------KFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169
Query: 251 -NCNGWLPL 258
+ GW PL
Sbjct: 170 QDKQGWTPL 178
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
L A + +F + + LL P L G PLH++ + +EI + LL +VN
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 74 RNY---CGQTALMQACRYGHWEVVQTL 97
+Y G T AC G+ EVV++L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSL 91
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%)
Query: 49 LHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRAD 108
LH A K E+ L+ENGA V ++ Q L +A G ++++ L +
Sbjct: 111 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170
Query: 109 YLSGRTALHFAAVNGHVRCIRLVVADF 135
G T L A GH L+V +
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKY 197
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 28/189 (14%)
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA-AVNGH------VRCIRLVVAD 134
L QAC + VQ LL + ++ GR LH++ + H + + V D
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 135 FVPS----VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 190
P PF I G+ VKS D+ L +NK + G+T LH+A +
Sbjct: 66 DYPDDSGWTPF-----HIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 191 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 250
F+ Q L++ A+V PLH AA G+LK ++L G S ++
Sbjct: 120 FEVSQFLIENGASVRIKD----------KFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169
Query: 251 -NCNGWLPL 258
+ GW PL
Sbjct: 170 QDKQGWTPL 178
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
Query: 49 LHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRAD 108
LH A K E+ L+ENGA V ++ Q L +A G ++++ L +
Sbjct: 111 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170
Query: 109 YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168
G T L A GH L+V + +++++ + G + + ++ + + L+
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKY--GAEYDLVDNK--GAKAEDVALNEQVKKFFLN 226
Query: 169 KFVNKAA 175
V+K A
Sbjct: 227 NVVDKLA 233
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
L A + +F + + LL P L G PLH++ + +EI + LL +VN
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 74 RNY---CGQTALMQACRYGHWEVVQTL 97
+Y G T AC G+ EVV++L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSL 91
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 220 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278
+G++P+H AA G L +VL+ GA +L+ G LP+ +A G + LAP SD
Sbjct: 75 SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD 133
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
SP+H AA G + + +L+E+GADVN+ + G + A R GH VV L
Sbjct: 77 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 220 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278
+G++P+H AA G L +VL+ GA +L+ G LP+ +A G + LAP SD
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD 131
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
SP+H AA G + + +L+E+GADVN+ + G + A R GH VV L
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 87/237 (36%), Gaps = 28/237 (11%)
Query: 39 YSTFGGLNSPLHFAAAKGHNEIVALLLENGAD---VNSRNYCGQTALMQACRYGHWEVVQ 95
Y T G ++ LH A H + LL A ++ +N GQTAL A G V+
Sbjct: 4 YVTEDG-DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 96 TLLLFRCNVTRADYLSGRTALHFA-AVNGHV-RCIRLVVADFVPSVPFEVMNTQIEGDRG 153
L V A+ G TALH A V H C+ L P + TQ +
Sbjct: 63 KLYAAGAGVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 154 DGSSVKSKCDQSALSKFVNKAAD------------GGITALHMAALNGYFDCVQLLLDLH 201
D S + D + + D G T LH+A ++ + V+LL D
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 258
A+++ G TPLH A ++LL GA + G PL
Sbjct: 182 ADLNKPE---------PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNS-RNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
++PLH A E+V LL + GAD+N CG+T L A V++ LL +
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS 138
T Y GRT L A + + RL+ A P
Sbjct: 219 TARMY-GGRTPLGSALLRPNPILARLLRAHGAPE 251
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 19 RDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCG 78
+D + V ++L D L K G +PLH A ++ LLL+ GAD +R Y G
Sbjct: 169 KDAEMV--RLLRDAGADLNKPEPTCG-RTPLHLAVEAQAASVLELLLKAGADPTARMYGG 225
Query: 79 QTALMQA 85
+T L A
Sbjct: 226 RTPLGSA 232
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 87/237 (36%), Gaps = 28/237 (11%)
Query: 39 YSTFGGLNSPLHFAAAKGHNEIVALLLENGAD---VNSRNYCGQTALMQACRYGHWEVVQ 95
Y T G ++ LH A H + LL A ++ +N GQTAL A G V+
Sbjct: 4 YVTEDG-DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 96 TLLLFRCNVTRADYLSGRTALHFA-AVNGHV-RCIRLVVADFVPSVPFEVMNTQIEGDRG 153
L V A+ G TALH A V H C+ L P + TQ +
Sbjct: 63 KLYAAGAGVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 154 DGSSVKSKCDQSALSKFVNKAAD------------GGITALHMAALNGYFDCVQLLLDLH 201
D S + D + + D G T LH+A ++ + V+LL D
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 258
A+++ G TPLH A ++LL GA + G PL
Sbjct: 182 ADLNKPE---------PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNS-RNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
++PLH A E+V LL + GAD+N CG+T L A V++ LL +
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS 138
T Y GRT L A + + RL+ A P
Sbjct: 219 TARMY-GGRTPLGSALLRPNPILARLLRAHGAPE 251
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 19 RDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCG 78
+D + V ++L D L K G +PLH A ++ LLL+ GAD +R Y G
Sbjct: 169 KDAEMV--RLLRDAGADLNKPEPTCG-RTPLHLAVEAQAASVLELLLKAGADPTARMYGG 225
Query: 79 QTALMQA 85
+T L A
Sbjct: 226 RTPLGSA 232
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 82/227 (36%), Gaps = 43/227 (18%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+ LH AAA ++ LLE AD N ++ G+T L A V Q L+ R
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
A G T L AA RL V + + + S D
Sbjct: 119 ARMHDGTTPLILAA--------RLAVEGMLEDL------------------INSHAD--- 149
Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226
VN D G +ALH AA D +LL AN TPL
Sbjct: 150 ----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN----------NREETPLF 195
Query: 227 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
AA G+ + +VLL A+R + LP D+A+ H + LL
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 155 GSSVKSKCDQSALSKFV-------NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 207
G+S + + + +S F+ N+ G TALH+AA D + LL+ A+ +
Sbjct: 27 GNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQ 86
Query: 208 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDV-ARMWG 265
G TPLH A Q+L+ A+ + +G PL + AR+
Sbjct: 87 D----------NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV 136
Query: 266 RHWLEPLLAPSSD 278
LE L+ +D
Sbjct: 137 EGMLEDLINSHAD 149
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 85/239 (35%), Gaps = 43/239 (17%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+ LH AA ++ LLE AD N ++ G+T L A V Q L+ R
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 119
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
A G T L AA RL V + + + S D
Sbjct: 120 ARMHDGTTPLILAA--------RLAVEGMLEDL------------------INSHAD--- 150
Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226
VN D G +ALH AA D +LL AN TPL
Sbjct: 151 ----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN----------NREETPLF 196
Query: 227 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFH 285
AA G+ + +VLL A+R + LP D+A+ H + LL + P+ H
Sbjct: 197 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 255
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 155 GSSVKSKCDQSALSKFV-------NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 207
G+S + + + +S F+ N+ G TALH+AA D + LL+ A+ +
Sbjct: 28 GNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ 87
Query: 208 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDV-ARMWG 265
G TPLH A Q+L+ A+ + +G PL + AR+
Sbjct: 88 D----------NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV 137
Query: 266 RHWLEPLLAPSSD 278
LE L+ +D
Sbjct: 138 EGMLEDLINSHAD 150
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 85/239 (35%), Gaps = 43/239 (17%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+ LH AA ++ LLE AD N ++ G+T L A V Q L+ R
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
A G T L AA RL V + + + S D
Sbjct: 87 ARMHDGTTPLILAA--------RLAVEGMLEDL------------------INSHAD--- 117
Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226
VN D G +ALH AA D +LL AN TPL
Sbjct: 118 ----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN----------NREETPLF 163
Query: 227 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFH 285
AA G+ + +VLL A+R + LP D+A+ H + LL + P+ H
Sbjct: 164 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 222
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
N+ G TALH+AA D + LL+ A+ + G TPLH A
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD----------NMGRTPLHAAVSA 68
Query: 232 GNLKCCQVLLSRGASRMSLNC-NGWLPLDV-ARMWGRHWLEPLLAPSSD 278
Q+L+ A+ + +G PL + AR+ LE L+ +D
Sbjct: 69 DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 117
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 81/227 (35%), Gaps = 43/227 (18%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
+ LH AA ++ LLE AD N ++ G+T L A V Q L+ R
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
A G T L AA RL V + + + S D
Sbjct: 119 ARMHDGTTPLILAA--------RLAVEGMLEDL------------------INSHAD--- 149
Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226
VN D G +ALH AA D +LL AN TPL
Sbjct: 150 ----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN----------NREETPLF 195
Query: 227 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
AA G+ + +VLL A+R + LP D+A+ H + LL
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 155 GSSVKSKCDQSALSKFV-------NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 207
G+S + + + +S F+ N+ G TALH+AA D + LL+ A+ +
Sbjct: 27 GNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ 86
Query: 208 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDV-ARMWG 265
G TPLH A Q+L+ A+ + +G PL + AR+
Sbjct: 87 D----------NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV 136
Query: 266 RHWLEPLLAPSSD 278
LE L+ +D
Sbjct: 137 EGMLEDLINSHAD 149
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 219 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278
G GST LH+ N +C ++LL AS N +G PLD+A+ E LL +
Sbjct: 203 GKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL---TQ 259
Query: 279 AVMPRFH 285
A+ RF+
Sbjct: 260 ALSGRFN 266
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 36.6 bits (83), Expect = 0.032, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
SP+H AA G + + +L+E+GADVN + G + A + GH VV + L ++ R
Sbjct: 76 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV-SFLAAESDLHR 134
Query: 107 ADYLSGRTALHFAAVNG 123
D G T L A G
Sbjct: 135 RD-ARGLTPLELALQRG 150
Score = 35.4 bits (80), Expect = 0.077, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 3/125 (2%)
Query: 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
+G+RL AA GD E + LL L G I LL+ GA
Sbjct: 8 AGDRLSGAAARGDVQEVRRLLHRE--LVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 65
Query: 70 DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR 129
N ++ G + + A R G + ++ L+ +V D +G +H A GH +
Sbjct: 66 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVS 124
Query: 130 LVVAD 134
+ A+
Sbjct: 125 FLAAE 129
Score = 32.0 bits (71), Expect = 0.82, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 220 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278
+G++P+H AA G L +VL+ GA + G LP+ +A G + LA SD
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 131
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 36.6 bits (83), Expect = 0.033, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
SP+H AA G + + +L+E+GADVN + G + A + GH VV + L ++ R
Sbjct: 70 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV-SFLAAESDLHR 128
Query: 107 ADYLSGRTALHFAAVNG 123
D G T L A G
Sbjct: 129 RD-ARGLTPLELALQRG 144
Score = 35.4 bits (80), Expect = 0.077, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 3/125 (2%)
Query: 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
+G+RL AA GD E + LL L G I LL+ GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRE--LVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59
Query: 70 DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR 129
N ++ G + + A R G + ++ L+ +V D +G +H A GH +
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVS 118
Query: 130 LVVAD 134
+ A+
Sbjct: 119 FLAAE 123
Score = 32.0 bits (71), Expect = 0.82, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 220 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278
+G++P+H AA G L +VL+ GA + G LP+ +A G + LA SD
Sbjct: 67 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 125
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 23 FVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLL-ENGADVNSRNYCGQTA 81
VE +D + K S + LH+AA + IV L+ E G++ + ++ G+T
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTP 316
Query: 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
+ A + G EVV L+ +V D + TA A N H + +
Sbjct: 317 IXLAAQEGRIEVVXYLIQQGASVEAVD-ATDHTARQLAQANNHHNIVDI 364
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 43 GGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRC 102
G ++ L AAA+G E V LLE GAD N+ N G+ + Q G +V + LLL
Sbjct: 10 GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGA 68
Query: 103 NVTRADYLSGRTALHFAAVNG--------HVRCIRLVVADFVPSVPFEVMNTQ 147
AD + +H AA G H RL V D +P ++ Q
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
PLH A GH + L L+ GAD+ +R+ G+ L A + ++V L L + A
Sbjct: 271 PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEA 330
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 229
+VN D + A N C + LL ANV+ AG PLH A
Sbjct: 228 WVNGGQDNATPLIQATAANSLLAC-EFLLQNGANVNQAD----------SAGRGPLHHAT 276
Query: 230 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
G+ + L RGA + + G PL +A
Sbjct: 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
PLH A GH + L L+ GAD+ +R+ G+ L A + ++V L L + A
Sbjct: 271 PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEA 330
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 229
+VN D + A N C + LL ANV+ AG PLH A
Sbjct: 228 WVNGGQDNATPLIQATAANSLLAC-EFLLQNGANVNQAD----------SAGRGPLHHAT 276
Query: 230 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
G+ + L RGA + + G PL +A
Sbjct: 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
PLH A GH + L L+ GAD+ +R+ G+ L A + ++V L L + A
Sbjct: 271 PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEA 330
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 229
+VN D + A N C + LL ANV+ AG PLH A
Sbjct: 228 WVNGGQDNATPLIQATAANSLLAC-EFLLQNGANVNQAD----------SAGRGPLHHAT 276
Query: 230 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
G+ + L RGA + + G PL +A
Sbjct: 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 44/244 (18%)
Query: 34 PCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEV 93
P L + + +H AA KG + V L+E G +N G TAL AC++G
Sbjct: 9 PKLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG---- 64
Query: 94 VQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRG 153
C V A YL+ +H + +G + I L V + +++ +EG +
Sbjct: 65 --------C-VDTAKYLASVGEVH-SLWHGQ-KPIHLAVX----ANKTDLVVALVEGAKE 109
Query: 154 DGS---SVKSKCDQSALSKFVNKAAD-GGITALHMAALNG--YFDCVQLLLDLHANVSAV 207
G S+ ++CD+ +++ + G TALH G Y + +++L+ L A+ +A
Sbjct: 110 RGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAK 169
Query: 208 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR- 266
A TPL A N + + S+ SL LD A G
Sbjct: 170 D----------KADETPLXRAXEFRNREALDLXXDTVPSKSSLR------LDYANKQGNS 213
Query: 267 --HW 268
HW
Sbjct: 214 HLHW 217
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 258
G T LH A CG N L++ GA+ S + +GW PL
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL 91
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
GITALH A + V L+ ANV++ H G TPLH AA + C
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSH----------GWTPLHCAASCNDTVIC 103
Query: 238 QVLLSRGAS 246
L+ GA+
Sbjct: 104 MALVQHGAA 112
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
+P AA K + ++ LLE+ DV++ + G+TAL+ G + V+ L ++
Sbjct: 45 ETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103
Query: 106 RADYLSGRTALHFAAVNGHVR 126
D G TALH AA G+VR
Sbjct: 104 HRDMRGGLTALHMAA--GYVR 122
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 27 KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTAL 82
++L + L GGL + LH AA E+V L+E GAD+ + G TAL
Sbjct: 93 RLLAEAGADLDHRDMRGGLTA-LHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
+P AA K + ++ LLE+ DV++ + G+TAL+ G + V+ L ++
Sbjct: 46 ETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104
Query: 106 RADYLSGRTALHFAAVNGHVR 126
D G TALH AA G+VR
Sbjct: 105 HRDMRGGLTALHMAA--GYVR 123
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 27 KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTAL 82
++L + L GGL + LH AA E+V L+E GAD+ + G TAL
Sbjct: 94 RLLAEAGADLDHRDMRGGLTA-LHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 91/229 (39%), Gaps = 39/229 (17%)
Query: 60 IVALLLENGADV-NSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF 118
+++ + GA + N + G+TAL A RY + + LL + D + GRT LH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNM-GRTPLH- 60
Query: 119 AAVNGHVRCIRLVVADFVPSVPFEVM----NTQIEGDRGDGSSVKSKCDQSALSKF---- 170
AAV+ + + F+++ T ++ DG++ + AL
Sbjct: 61 AAVSADAQGV------------FQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDL 108
Query: 171 ------VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224
VN D G +ALH AA D +LL AN TP
Sbjct: 109 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN----------NKEETP 158
Query: 225 LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
L AA G+ + +VLL A+R + LP D+A+ H + LL
Sbjct: 159 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
S LH+AAA + + +LL+NGA+ + +N +T L A R G +E + LL N
Sbjct: 124 SALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDI 183
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLV 131
D++ R A H +RL+
Sbjct: 184 TDHMD-RLPRDIAQERMHHDIVRLL 207
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 173 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
KAADG TALH AAL DC++LLL A V V T++D+
Sbjct: 222 KAADGN-TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 60 IVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA 119
+V +++NG ++++ G TAL A Y + ++ LL R V + +G TAL A
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE-AGETALDIA 266
Query: 120 AVNGHVRCIRLV 131
H C L+
Sbjct: 267 RKKHHKECEELL 278
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
N+ LH+AA + + LLL+ A V + N G+TAL A + H E + L
Sbjct: 227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
G+T LH+AA C ++LL A ++N G LD+AR E LL
Sbjct: 226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 173 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
KAADG TALH AAL DC++LLL A V V T++D+
Sbjct: 203 KAADGN-TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 246
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 60 IVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA 119
+V +++NG ++++ G TAL A Y + ++ LL R V + +G TAL A
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE-AGETALDIA 247
Query: 120 AVNGHVRCIRLV 131
H C L+
Sbjct: 248 RKKHHKECEELL 259
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWE 92
N+ LH+AA + + LLL+ A V + N G+TAL A + H E
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 254
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
G+T LH+AA C ++LL A ++N G LD+AR
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRN-------------YCGQTALMQACRYGHWE 92
+S LH A K + V LL+ENGADV+ R Y G+ L A W+
Sbjct: 104 HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 163
Query: 93 VVQTLL 98
VV LL
Sbjct: 164 VVTYLL 169
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRN-------------YCGQTALMQACRYGHWE 92
+S LH A K + V LL+ENGADV+ R Y G+ L A W+
Sbjct: 91 HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150
Query: 93 VVQTLL 98
VV LL
Sbjct: 151 VVTYLL 156
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRN-------------YCGQTALMQACRYGHWE 92
+S LH A K + V LL+ENGA+V++R Y G+ L A W+
Sbjct: 96 HSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWD 155
Query: 93 VVQTLL 98
VV LL
Sbjct: 156 VVSYLL 161
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 49 LHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRAD 108
L AAA+G E V LLE GA+ N+ N G+ + Q G V + LLL AD
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 109 YLSGRTALHFAAVNG--------HVRCIRLVVADFVPSVPFEV 143
+ +H AA G H RL V D +P ++
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 320 CAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 373
C +CLE + C H C C L L + PS+ CPLC++ I
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ---------CPLCKNDI 68
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
S LH+AAA + + +LL+NGA+ + +N +T L A R G +E + LL N
Sbjct: 50 SALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDI 109
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLV 131
D++ R A H +RL+
Sbjct: 110 TDHMD-RLPRDIAQERMHHDIVRLL 133
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQ 95
PLH AA +IV +LL +G D + + G TAL A G+ + V+
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVK 112
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 49 LHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRAD 108
L AAA+G E V LLE GA N+ N G+ + Q G V + LLL AD
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 109 YLSGRTALHFAAVNG--------HVRCIRLVVADFVPSVPFEV 143
+ +H AA G H RL V D +P ++
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,119,405
Number of Sequences: 62578
Number of extensions: 605146
Number of successful extensions: 1905
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 585
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)