Query 010335
Match_columns 513
No_of_seqs 439 out of 2223
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 23:19:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02791 ankyrin-like protein; 100.0 4.8E-36 1E-40 295.5 23.8 214 8-278 28-244 (284)
2 PHA02875 ankyrin repeat protei 100.0 1.7E-35 3.8E-40 310.2 26.7 224 11-279 3-227 (413)
3 KOG4412 26S proteasome regulat 100.0 7.2E-36 1.6E-40 261.1 14.9 205 13-263 6-213 (226)
4 PHA02791 ankyrin-like protein; 100.0 1.5E-34 3.2E-39 284.9 25.2 213 20-283 9-224 (284)
5 PHA03100 ankyrin repeat protei 100.0 9E-35 1.9E-39 310.6 25.2 241 7-297 32-290 (480)
6 PHA02874 ankyrin repeat protei 100.0 2.1E-34 4.6E-39 303.8 27.5 209 12-265 3-234 (434)
7 PHA02874 ankyrin repeat protei 100.0 3.9E-34 8.5E-39 301.7 28.2 239 8-298 33-296 (434)
8 PHA03100 ankyrin repeat protei 100.0 3.5E-34 7.7E-39 306.0 24.1 224 9-278 67-307 (480)
9 PHA02878 ankyrin repeat protei 100.0 7.6E-34 1.6E-38 303.0 25.6 207 10-263 37-309 (477)
10 PHA03095 ankyrin-like protein; 100.0 4.9E-34 1.1E-38 304.1 23.9 253 9-277 46-313 (471)
11 PHA02946 ankyin-like protein; 100.0 1.7E-33 3.7E-38 296.1 24.9 222 10-278 37-267 (446)
12 PHA02716 CPXV016; CPX019; EVM0 100.0 1E-33 2.3E-38 307.5 23.9 263 9-277 176-563 (764)
13 KOG0509 Ankyrin repeat and DHH 100.0 1.6E-33 3.5E-38 289.3 17.7 209 11-264 45-255 (600)
14 PHA02946 ankyin-like protein; 100.0 1.3E-32 2.8E-37 289.5 25.0 254 8-276 70-345 (446)
15 PHA03095 ankyrin-like protein; 100.0 1.5E-32 3.2E-37 292.7 25.1 263 15-297 19-297 (471)
16 PHA02989 ankyrin repeat protei 100.0 2.3E-32 4.9E-37 292.8 24.5 231 10-276 35-311 (494)
17 PHA02876 ankyrin repeat protei 100.0 1.7E-32 3.7E-37 304.9 23.5 257 8-277 39-398 (682)
18 PHA02876 ankyrin repeat protei 100.0 4.7E-32 1E-36 301.4 26.6 270 10-298 178-484 (682)
19 KOG4412 26S proteasome regulat 100.0 8.9E-33 1.9E-37 241.7 14.3 194 46-283 4-202 (226)
20 PHA02798 ankyrin-like protein; 100.0 6E-32 1.3E-36 289.2 23.6 225 16-276 44-313 (489)
21 PHA02878 ankyrin repeat protei 100.0 1.3E-31 2.9E-36 285.8 25.8 236 13-299 3-309 (477)
22 KOG0510 Ankyrin repeat protein 100.0 4.2E-32 9.1E-37 283.5 20.0 283 8-307 86-390 (929)
23 PHA02875 ankyrin repeat protei 100.0 2.2E-31 4.7E-36 279.2 25.0 213 8-265 33-249 (413)
24 PHA02716 CPXV016; CPX019; EVM0 100.0 1.5E-31 3.1E-36 290.8 22.9 245 18-277 150-426 (764)
25 PHA02989 ankyrin repeat protei 100.0 2.5E-30 5.4E-35 277.0 24.1 227 19-297 12-296 (494)
26 KOG0508 Ankyrin repeat protein 100.0 7.3E-31 1.6E-35 259.3 14.0 217 14-275 8-236 (615)
27 KOG0509 Ankyrin repeat and DHH 100.0 5.8E-30 1.3E-34 263.2 18.1 206 46-297 45-252 (600)
28 PHA02859 ankyrin repeat protei 100.0 2.3E-29 5E-34 238.8 20.7 175 45-265 21-203 (209)
29 KOG0510 Ankyrin repeat protein 100.0 1.3E-29 2.9E-34 264.8 19.5 259 11-285 122-409 (929)
30 PHA02917 ankyrin-like protein; 100.0 7.4E-29 1.6E-33 270.9 24.1 220 23-280 12-257 (661)
31 PHA02917 ankyrin-like protein; 100.0 9.1E-29 2E-33 270.2 22.7 279 12-298 105-493 (661)
32 KOG4177 Ankyrin [Cell wall/mem 100.0 3.8E-30 8.3E-35 284.4 10.5 256 8-279 372-631 (1143)
33 PHA02798 ankyrin-like protein; 100.0 1.7E-28 3.6E-33 262.6 21.6 230 8-252 69-322 (489)
34 PHA02795 ankyrin-like protein; 100.0 1.5E-28 3.3E-33 251.4 19.0 206 26-278 65-286 (437)
35 KOG0508 Ankyrin repeat protein 100.0 1.8E-28 4E-33 242.3 12.7 190 8-242 40-236 (615)
36 PHA02792 ankyrin-like protein; 100.0 3.8E-27 8.2E-32 249.4 22.9 275 12-301 73-454 (631)
37 PHA02859 ankyrin repeat protei 100.0 3.6E-27 7.8E-32 223.8 20.5 174 10-232 21-203 (209)
38 PHA02730 ankyrin-like protein; 100.0 7.9E-27 1.7E-31 249.5 23.7 282 9-295 40-422 (672)
39 PHA02795 ankyrin-like protein; 99.9 4.9E-27 1.1E-31 240.4 19.6 189 16-251 83-292 (437)
40 KOG4177 Ankyrin [Cell wall/mem 99.9 6.6E-28 1.4E-32 266.8 12.0 281 6-310 337-622 (1143)
41 PHA02730 ankyrin-like protein; 99.9 1.6E-26 3.5E-31 247.1 21.2 216 18-278 210-522 (672)
42 PLN03192 Voltage-dependent pot 99.9 1E-25 2.2E-30 254.5 23.1 176 45-266 525-701 (823)
43 PHA02792 ankyrin-like protein; 99.9 4.2E-25 9.2E-30 233.9 20.2 241 10-263 105-452 (631)
44 TIGR00870 trp transient-recept 99.9 3E-25 6.5E-30 249.0 17.2 233 8-275 15-278 (743)
45 KOG0502 Integral membrane anky 99.9 9.2E-26 2E-30 203.4 8.6 224 10-280 62-285 (296)
46 KOG0505 Myosin phosphatase, re 99.9 1.2E-24 2.6E-29 219.6 12.1 234 10-263 40-273 (527)
47 KOG0507 CASK-interacting adapt 99.9 3.4E-24 7.4E-29 223.0 15.0 245 11-296 4-260 (854)
48 KOG0507 CASK-interacting adapt 99.9 2.1E-24 4.6E-29 224.6 13.2 217 9-264 48-264 (854)
49 PLN03192 Voltage-dependent pot 99.9 1.8E-23 3.9E-28 236.3 21.7 175 8-230 523-698 (823)
50 KOG0502 Integral membrane anky 99.9 1.1E-24 2.4E-29 196.4 6.4 201 10-259 96-296 (296)
51 TIGR00870 trp transient-recept 99.9 1.5E-22 3.4E-27 227.2 16.1 197 44-265 16-219 (743)
52 KOG0514 Ankyrin repeat protein 99.9 1.7E-22 3.6E-27 194.7 11.0 159 41-243 264-429 (452)
53 KOG0514 Ankyrin repeat protein 99.9 1.2E-22 2.6E-27 195.7 9.9 162 71-277 261-430 (452)
54 PHA02743 Viral ankyrin protein 99.9 1.7E-21 3.8E-26 178.0 14.2 144 68-255 10-162 (166)
55 PHA02743 Viral ankyrin protein 99.8 1.7E-20 3.6E-25 171.6 14.5 133 45-210 20-160 (166)
56 PHA02884 ankyrin repeat protei 99.8 2.2E-20 4.8E-25 184.4 16.4 149 46-245 34-186 (300)
57 KOG0505 Myosin phosphatase, re 99.8 8.5E-21 1.9E-25 191.9 10.5 208 48-278 43-255 (527)
58 PHA02741 hypothetical protein; 99.8 6.9E-20 1.5E-24 168.1 13.9 24 74-97 17-40 (169)
59 PHA02741 hypothetical protein; 99.8 8.1E-20 1.8E-24 167.6 14.3 129 44-205 20-159 (169)
60 PHA02884 ankyrin repeat protei 99.8 1.7E-19 3.6E-24 178.3 17.1 151 10-202 33-186 (300)
61 KOG4369 RTK signaling protein 99.8 1.1E-20 2.4E-25 201.7 7.9 229 10-281 757-987 (2131)
62 KOG4369 RTK signaling protein 99.8 2.9E-20 6.3E-25 198.6 9.1 255 9-275 789-1048(2131)
63 PHA02736 Viral ankyrin protein 99.8 1.4E-19 3.1E-24 163.4 10.6 132 71-248 10-153 (154)
64 PHA02736 Viral ankyrin protein 99.8 3.3E-19 7.1E-24 161.0 10.9 128 43-205 15-153 (154)
65 KOG0512 Fetal globin-inducing 99.8 7.2E-18 1.6E-22 147.3 12.3 81 174-264 126-208 (228)
66 PF12796 Ank_2: Ankyrin repeat 99.7 1.1E-17 2.4E-22 136.3 11.2 88 14-107 1-88 (89)
67 KOG0512 Fetal globin-inducing 99.7 3E-17 6.5E-22 143.4 13.9 146 11-190 64-210 (228)
68 KOG3676 Ca2+-permeable cation 99.7 1.1E-17 2.3E-22 177.1 12.5 211 46-276 102-330 (782)
69 KOG0195 Integrin-linked kinase 99.7 1E-17 2.2E-22 157.1 8.1 74 178-261 67-140 (448)
70 PF12796 Ank_2: Ankyrin repeat 99.7 3.1E-16 6.8E-21 127.7 10.8 89 116-251 1-89 (89)
71 KOG3676 Ca2+-permeable cation 99.7 5.1E-16 1.1E-20 164.6 14.7 189 12-243 103-330 (782)
72 cd00204 ANK ankyrin repeats; 99.7 1.7E-15 3.7E-20 129.9 14.7 89 45-134 7-95 (126)
73 KOG4214 Myotrophin and similar 99.7 5.3E-16 1.2E-20 121.7 10.1 104 12-119 4-107 (117)
74 KOG0195 Integrin-linked kinase 99.7 1.3E-16 2.8E-21 149.7 7.1 160 14-208 4-163 (448)
75 cd00204 ANK ankyrin repeats; 99.6 3.5E-15 7.5E-20 127.9 14.6 121 9-132 6-126 (126)
76 COG0666 Arp FOG: Ankyrin repea 99.6 3.9E-14 8.6E-19 134.2 14.4 132 72-244 67-203 (235)
77 COG0666 Arp FOG: Ankyrin repea 99.5 6.6E-13 1.4E-17 125.8 15.3 125 110-277 71-203 (235)
78 KOG4214 Myotrophin and similar 99.5 2.6E-13 5.7E-18 106.7 8.3 104 114-261 4-107 (117)
79 PF13637 Ank_4: Ankyrin repeat 99.4 2.8E-13 6E-18 99.4 6.8 54 45-98 1-54 (54)
80 KOG1710 MYND Zn-finger and ank 99.4 5.1E-13 1.1E-17 125.7 10.0 125 112-278 12-136 (396)
81 KOG0515 p53-interacting protei 99.4 7.2E-13 1.6E-17 133.6 10.8 120 12-133 552-673 (752)
82 PF13857 Ank_5: Ankyrin repeat 99.4 2.5E-13 5.4E-18 100.3 3.9 55 197-261 1-56 (56)
83 PTZ00322 6-phosphofructo-2-kin 99.4 3.1E-12 6.8E-17 141.3 12.2 104 13-119 85-195 (664)
84 PTZ00322 6-phosphofructo-2-kin 99.4 4.1E-12 9E-17 140.3 12.5 106 114-262 84-196 (664)
85 KOG1710 MYND Zn-finger and ank 99.3 8E-12 1.7E-16 117.8 11.4 122 9-133 11-133 (396)
86 PF13857 Ank_5: Ankyrin repeat 99.3 1.4E-12 2.9E-17 96.4 4.6 55 64-119 1-56 (56)
87 PF13637 Ank_4: Ankyrin repeat 99.3 3.1E-12 6.7E-17 93.8 6.3 54 178-241 1-54 (54)
88 KOG0515 p53-interacting protei 99.1 1.6E-10 3.4E-15 117.0 8.7 91 46-137 551-641 (752)
89 KOG0783 Uncharacterized conser 98.9 5.5E-10 1.2E-14 118.3 4.8 101 165-274 39-139 (1267)
90 KOG0818 GTPase-activating prot 98.9 2E-09 4.3E-14 108.4 7.1 94 171-273 120-219 (669)
91 KOG0506 Glutaminase (contains 98.8 4.5E-09 9.8E-14 105.4 5.4 90 45-135 506-596 (622)
92 KOG0782 Predicted diacylglycer 98.8 2.3E-08 5E-13 102.1 10.2 121 10-133 866-988 (1004)
93 KOG0818 GTPase-activating prot 98.7 3.7E-08 8E-13 99.4 9.7 86 13-99 136-221 (669)
94 KOG0506 Glutaminase (contains 98.7 1.4E-08 2.9E-13 102.1 4.1 95 174-278 502-597 (622)
95 KOG0705 GTPase-activating prot 98.7 6E-08 1.3E-12 99.5 8.4 92 12-103 626-719 (749)
96 PF13606 Ank_3: Ankyrin repeat 98.6 3.2E-08 6.9E-13 62.8 3.8 29 221-249 2-30 (30)
97 PF13606 Ank_3: Ankyrin repeat 98.6 4.7E-08 1E-12 62.0 3.9 30 177-206 1-30 (30)
98 PF00023 Ank: Ankyrin repeat H 98.6 5.6E-08 1.2E-12 63.3 4.3 32 221-252 2-33 (33)
99 KOG0783 Uncharacterized conser 98.6 3.6E-08 7.8E-13 104.9 3.7 76 45-121 52-128 (1267)
100 PF00023 Ank: Ankyrin repeat H 98.6 1.1E-07 2.3E-12 61.9 4.5 31 45-75 2-32 (33)
101 KOG3609 Receptor-activated Ca2 98.5 4E-07 8.6E-12 98.3 9.3 130 46-206 26-159 (822)
102 KOG0522 Ankyrin repeat protein 98.4 2E-07 4.4E-12 95.4 5.2 81 180-270 22-104 (560)
103 KOG0782 Predicted diacylglycer 98.4 9.1E-07 2E-11 90.7 9.7 120 82-243 870-989 (1004)
104 PF13920 zf-C3HC4_3: Zinc fing 98.4 2.1E-07 4.6E-12 66.8 3.0 48 317-376 2-50 (50)
105 KOG0705 GTPase-activating prot 98.4 9.7E-07 2.1E-11 90.9 8.5 92 47-139 626-721 (749)
106 KOG0522 Ankyrin repeat protein 98.3 1.1E-06 2.5E-11 90.0 8.1 89 12-100 22-110 (560)
107 KOG3609 Receptor-activated Ca2 98.3 1.9E-06 4.1E-11 93.1 9.6 123 8-137 23-156 (822)
108 KOG4172 Predicted E3 ubiquitin 98.2 1.8E-07 3.8E-12 65.5 -1.7 50 318-378 8-58 (62)
109 KOG0521 Putative GTPase activa 98.1 1.8E-06 4E-11 95.7 4.8 88 177-274 655-742 (785)
110 KOG0521 Putative GTPase activa 98.1 3.1E-06 6.8E-11 93.9 5.9 102 30-132 641-742 (785)
111 KOG0511 Ankyrin repeat protein 98.1 7.7E-06 1.7E-10 80.5 7.3 71 48-119 39-109 (516)
112 KOG4265 Predicted E3 ubiquitin 97.9 4.1E-06 8.9E-11 82.5 1.9 55 315-381 288-343 (349)
113 KOG0511 Ankyrin repeat protein 97.8 5.3E-05 1.1E-09 74.8 7.4 75 12-89 38-112 (516)
114 KOG2384 Major histocompatibili 97.8 6.8E-05 1.5E-09 67.5 7.1 58 46-103 13-71 (223)
115 KOG2384 Major histocompatibili 97.8 4.4E-05 9.5E-10 68.7 5.7 66 171-246 5-71 (223)
116 KOG0520 Uncharacterized conser 97.7 6E-05 1.3E-09 83.5 6.4 129 43-200 572-702 (975)
117 KOG0520 Uncharacterized conser 97.7 5.4E-05 1.2E-09 83.8 5.8 134 71-243 567-702 (975)
118 KOG4275 Predicted E3 ubiquitin 97.5 2.3E-05 5E-10 74.5 0.6 48 316-379 299-347 (350)
119 PLN03208 E3 ubiquitin-protein 97.2 0.00029 6.3E-09 64.4 3.5 68 314-381 15-86 (193)
120 PF13639 zf-RING_2: Ring finge 97.2 0.00022 4.8E-09 49.5 1.9 41 318-370 1-44 (44)
121 KOG1785 Tyrosine kinase negati 97.2 0.00017 3.6E-09 71.5 1.7 54 316-379 368-421 (563)
122 KOG0317 Predicted E3 ubiquitin 97.2 0.00021 4.6E-09 68.5 2.3 49 313-373 235-283 (293)
123 PHA02929 N1R/p28-like protein; 97.1 0.00041 8.9E-09 66.2 3.8 52 316-379 173-232 (238)
124 KOG2505 Ankyrin repeat protein 97.0 0.00062 1.4E-08 69.7 4.5 69 190-262 403-471 (591)
125 KOG0823 Predicted E3 ubiquitin 97.0 0.00035 7.6E-09 65.0 2.3 59 314-381 44-102 (230)
126 PF13923 zf-C3HC4_2: Zinc fing 97.0 0.00058 1.3E-08 46.0 2.5 38 320-369 1-39 (39)
127 PF15227 zf-C3HC4_4: zinc fing 97.0 0.00085 1.8E-08 46.0 3.3 42 320-369 1-42 (42)
128 PF13920 zf-C3HC4_3: Zinc fing 96.8 0.00012 2.5E-09 52.4 -2.4 44 365-419 4-49 (50)
129 PF14634 zf-RING_5: zinc-RING 96.8 0.0011 2.4E-08 46.0 2.5 40 320-371 2-44 (44)
130 cd00162 RING RING-finger (Real 96.8 0.0013 2.7E-08 45.2 2.8 44 319-373 1-45 (45)
131 KOG1571 Predicted E3 ubiquitin 96.7 0.00054 1.2E-08 67.8 1.1 49 315-379 303-352 (355)
132 KOG0320 Predicted E3 ubiquitin 96.7 0.00099 2.1E-08 59.4 2.5 49 314-374 128-178 (187)
133 PF00097 zf-C3HC4: Zinc finger 96.6 0.0015 3.2E-08 44.4 2.4 40 320-369 1-41 (41)
134 smart00248 ANK ankyrin repeats 96.6 0.0034 7.5E-08 37.6 3.9 28 221-248 2-29 (30)
135 smart00248 ANK ankyrin repeats 96.6 0.004 8.7E-08 37.3 4.1 26 46-71 3-28 (30)
136 KOG2505 Ankyrin repeat protein 96.5 0.0045 9.8E-08 63.6 5.9 62 58-120 404-471 (591)
137 PHA02926 zinc finger-like prot 96.5 0.002 4.3E-08 59.7 3.1 57 315-377 168-233 (242)
138 KOG2164 Predicted E3 ubiquitin 96.4 0.0016 3.4E-08 67.4 1.8 52 317-375 186-237 (513)
139 COG5574 PEX10 RING-finger-cont 96.3 0.0016 3.4E-08 61.8 1.2 47 316-373 214-261 (271)
140 smart00184 RING Ring finger. E 95.9 0.0055 1.2E-07 40.3 2.3 39 320-369 1-39 (39)
141 PF12678 zf-rbx1: RING-H2 zinc 95.7 0.013 2.8E-07 45.5 3.6 43 316-370 18-73 (73)
142 PF13445 zf-RING_UBOX: RING-ty 95.6 0.0072 1.6E-07 41.5 1.8 31 320-351 1-35 (43)
143 KOG1100 Predicted E3 ubiquitin 95.6 0.0055 1.2E-07 57.6 1.7 43 320-378 161-204 (207)
144 PF03158 DUF249: Multigene fam 95.5 0.1 2.2E-06 47.4 9.1 47 48-97 49-95 (192)
145 COG5236 Uncharacterized conser 95.5 0.01 2.3E-07 58.1 3.0 59 314-382 58-116 (493)
146 KOG4172 Predicted E3 ubiquitin 95.5 0.00076 1.6E-08 47.6 -3.5 47 365-421 9-57 (62)
147 PF06128 Shigella_OspC: Shigel 95.4 0.11 2.3E-06 48.7 9.2 51 189-246 228-279 (284)
148 TIGR00570 cdk7 CDK-activating 95.3 0.014 3E-07 57.6 3.2 47 317-374 3-54 (309)
149 KOG4265 Predicted E3 ubiquitin 95.0 0.0042 9.1E-08 61.6 -1.2 49 363-420 290-338 (349)
150 TIGR00599 rad18 DNA repair pro 95.0 0.015 3.2E-07 59.8 2.5 49 315-375 24-72 (397)
151 PF03158 DUF249: Multigene fam 94.8 0.36 7.9E-06 43.9 10.4 71 13-93 49-119 (192)
152 KOG4275 Predicted E3 ubiquitin 94.8 0.0063 1.4E-07 58.3 -0.7 42 365-420 302-344 (350)
153 smart00504 Ubox Modified RING 93.8 0.05 1.1E-06 40.6 2.6 44 319-374 3-46 (63)
154 COG5243 HRD1 HRD ubiquitin lig 93.6 0.035 7.6E-07 55.1 1.7 49 315-375 285-346 (491)
155 PLN03208 E3 ubiquitin-protein 93.6 0.027 5.8E-07 51.7 0.9 52 363-425 18-86 (193)
156 KOG0317 Predicted E3 ubiquitin 93.5 0.019 4.2E-07 55.3 -0.2 55 359-424 235-290 (293)
157 PF06128 Shigella_OspC: Shigel 93.3 0.56 1.2E-05 44.0 8.9 115 13-137 156-279 (284)
158 COG5432 RAD18 RING-finger-cont 93.3 0.054 1.2E-06 52.0 2.4 54 315-381 23-76 (391)
159 KOG4628 Predicted E3 ubiquitin 92.9 0.058 1.2E-06 54.2 2.1 46 318-374 230-278 (348)
160 PF14447 Prok-RING_4: Prokaryo 92.6 0.063 1.4E-06 38.5 1.3 46 315-374 5-50 (55)
161 COG5540 RING-finger-containing 92.2 0.08 1.7E-06 51.3 1.9 47 316-373 322-371 (374)
162 PF11929 DUF3447: Domain of un 92.1 0.28 6E-06 38.3 4.6 49 10-67 6-54 (76)
163 PF13639 zf-RING_2: Ring finge 91.9 0.013 2.8E-07 40.5 -2.9 39 365-414 2-44 (44)
164 PHA02929 N1R/p28-like protein; 91.8 0.063 1.4E-06 51.4 0.8 44 364-418 175-227 (238)
165 KOG0287 Postreplication repair 91.6 0.099 2.1E-06 51.4 1.9 48 315-374 21-68 (442)
166 KOG0824 Predicted E3 ubiquitin 91.5 0.092 2E-06 51.0 1.5 52 315-377 5-56 (324)
167 KOG2177 Predicted E3 ubiquitin 91.5 0.096 2.1E-06 52.1 1.7 46 314-371 10-55 (386)
168 PF14634 zf-RING_5: zinc-RING 91.2 0.095 2.1E-06 36.2 1.0 39 366-415 2-44 (44)
169 KOG0978 E3 ubiquitin ligase in 91.1 0.058 1.3E-06 58.9 -0.4 47 316-373 642-688 (698)
170 cd00162 RING RING-finger (Real 90.8 0.063 1.4E-06 36.4 -0.3 41 366-417 2-45 (45)
171 PF12861 zf-Apc11: Anaphase-pr 90.8 0.24 5.2E-06 39.2 2.9 38 327-373 44-81 (85)
172 KOG0320 Predicted E3 ubiquitin 90.2 0.047 1E-06 49.0 -1.6 45 365-420 133-180 (187)
173 TIGR00599 rad18 DNA repair pro 89.7 0.11 2.4E-06 53.5 0.4 46 363-419 26-72 (397)
174 PF13923 zf-C3HC4_2: Zinc fing 89.0 0.044 9.6E-07 36.7 -2.1 37 366-413 1-39 (39)
175 KOG4185 Predicted E3 ubiquitin 88.8 0.18 4E-06 50.3 1.2 64 318-396 4-73 (296)
176 KOG4692 Predicted E3 ubiquitin 88.8 0.23 5E-06 49.1 1.7 55 313-379 418-472 (489)
177 KOG4159 Predicted E3 ubiquitin 88.7 0.22 4.8E-06 51.4 1.7 51 315-377 82-132 (398)
178 PF11929 DUF3447: Domain of un 88.6 0.77 1.7E-05 35.7 4.4 47 47-100 8-54 (76)
179 PF07800 DUF1644: Protein of u 87.2 0.78 1.7E-05 40.6 3.9 19 363-381 80-98 (162)
180 TIGR00570 cdk7 CDK-activating 87.2 0.25 5.5E-06 48.9 1.0 47 365-422 5-58 (309)
181 KOG0823 Predicted E3 ubiquitin 85.9 0.29 6.2E-06 46.0 0.6 50 365-425 49-102 (230)
182 PF15227 zf-C3HC4_4: zinc fing 85.7 0.15 3.3E-06 34.8 -1.0 37 366-413 1-42 (42)
183 smart00184 RING Ring finger. E 84.5 0.22 4.8E-06 32.3 -0.7 37 366-413 1-39 (39)
184 KOG0802 E3 ubiquitin ligase [P 84.5 0.39 8.4E-06 52.3 0.9 44 316-371 290-338 (543)
185 smart00504 Ubox Modified RING 84.4 0.28 6E-06 36.4 -0.2 45 365-420 3-48 (63)
186 KOG1100 Predicted E3 ubiquitin 84.3 0.66 1.4E-05 43.7 2.2 41 366-420 161-202 (207)
187 KOG4739 Uncharacterized protei 83.7 0.52 1.1E-05 44.7 1.3 47 318-378 4-52 (233)
188 PF00097 zf-C3HC4: Zinc finger 83.3 0.15 3.3E-06 34.4 -1.9 37 366-413 1-41 (41)
189 KOG0825 PHD Zn-finger protein 82.0 0.54 1.2E-05 51.3 0.7 87 316-414 122-237 (1134)
190 KOG2879 Predicted E3 ubiquitin 80.7 1.6 3.4E-05 42.2 3.2 55 313-377 235-290 (298)
191 KOG2164 Predicted E3 ubiquitin 79.9 0.46 1E-05 49.7 -0.6 51 365-426 188-244 (513)
192 PF04564 U-box: U-box domain; 79.9 0.88 1.9E-05 35.1 1.1 57 317-384 4-60 (73)
193 PHA02926 zinc finger-like prot 79.4 0.43 9.4E-06 44.6 -0.9 44 364-418 171-230 (242)
194 KOG1813 Predicted E3 ubiquitin 77.5 0.91 2E-05 44.2 0.6 51 317-379 241-291 (313)
195 COG5219 Uncharacterized conser 77.4 1.5 3.3E-05 49.0 2.3 51 314-374 1466-1523(1525)
196 PF14835 zf-RING_6: zf-RING of 77.4 1.3 2.9E-05 33.0 1.3 42 317-372 7-49 (65)
197 KOG1039 Predicted E3 ubiquitin 76.9 1.5 3.3E-05 44.3 2.1 56 315-375 159-222 (344)
198 KOG1571 Predicted E3 ubiquitin 76.9 0.92 2E-05 45.5 0.5 42 365-420 307-349 (355)
199 KOG0802 E3 ubiquitin ligase [P 76.9 0.39 8.4E-06 52.3 -2.4 47 365-422 293-345 (543)
200 COG5574 PEX10 RING-finger-cont 74.8 0.89 1.9E-05 43.6 -0.2 49 363-422 215-266 (271)
201 KOG0287 Postreplication repair 74.5 0.67 1.5E-05 45.8 -1.1 46 363-419 23-69 (442)
202 KOG0804 Cytoplasmic Zn-finger 73.5 2.4 5.2E-05 43.7 2.4 71 313-414 171-247 (493)
203 KOG0824 Predicted E3 ubiquitin 73.4 1.5 3.2E-05 42.9 0.8 47 365-422 9-57 (324)
204 KOG3002 Zn finger protein [Gen 73.3 2.2 4.8E-05 42.5 2.1 50 313-377 44-94 (299)
205 KOG3002 Zn finger protein [Gen 72.8 1.6 3.4E-05 43.5 0.9 43 364-420 49-93 (299)
206 KOG0311 Predicted E3 ubiquitin 72.3 0.87 1.9E-05 45.4 -0.9 54 315-379 41-95 (381)
207 COG5432 RAD18 RING-finger-cont 70.1 1.2 2.7E-05 43.0 -0.4 49 363-422 25-74 (391)
208 KOG1428 Inhibitor of type V ad 68.8 2.8 6E-05 49.1 1.8 60 314-375 3483-3545(3738)
209 COG5152 Uncharacterized conser 66.3 2.5 5.5E-05 38.6 0.8 52 316-379 195-246 (259)
210 KOG0825 PHD Zn-finger protein 65.2 2.4 5.2E-05 46.6 0.4 29 394-422 147-175 (1134)
211 KOG1001 Helicase-like transcri 64.9 2.8 6E-05 46.6 0.9 53 318-381 455-507 (674)
212 COG5175 MOT2 Transcriptional r 63.8 3.4 7.4E-05 40.9 1.2 50 313-373 10-63 (480)
213 KOG0827 Predicted E3 ubiquitin 63.7 4 8.7E-05 41.3 1.7 51 317-382 4-58 (465)
214 PF14570 zf-RING_4: RING/Ubox 63.2 5.6 0.00012 28.0 1.8 31 331-372 16-46 (48)
215 KOG2932 E3 ubiquitin ligase in 61.3 3.2 7E-05 40.6 0.5 49 317-379 90-139 (389)
216 PF03002 Somatostatin: Somatos 59.3 4.6 9.9E-05 21.9 0.6 14 486-499 2-15 (18)
217 KOG2879 Predicted E3 ubiquitin 59.0 7.1 0.00015 37.8 2.3 46 362-418 238-287 (298)
218 smart00744 RINGv The RING-vari 58.2 9.4 0.0002 26.9 2.3 42 319-370 1-49 (49)
219 PF14835 zf-RING_6: zf-RING of 57.0 7.4 0.00016 29.1 1.7 40 365-417 9-50 (65)
220 KOG1785 Tyrosine kinase negati 56.5 2.8 6.1E-05 42.4 -0.8 45 365-420 371-418 (563)
221 PF05290 Baculo_IE-1: Baculovi 54.4 8.5 0.00018 33.1 1.8 51 316-375 79-133 (140)
222 KOG2177 Predicted E3 ubiquitin 53.4 4 8.7E-05 40.3 -0.3 42 363-415 13-55 (386)
223 KOG3039 Uncharacterized conser 53.1 11 0.00023 36.0 2.4 47 316-374 220-270 (303)
224 KOG3799 Rab3 effector RIM1 and 52.7 4.8 0.0001 34.4 0.1 61 315-379 63-123 (169)
225 KOG1734 Predicted RING-contain 51.6 14 0.00031 35.6 3.0 74 300-384 205-290 (328)
226 KOG0828 Predicted E3 ubiquitin 51.5 6 0.00013 41.3 0.6 47 316-373 570-633 (636)
227 KOG1941 Acetylcholine receptor 51.2 6.9 0.00015 39.7 0.9 55 316-381 364-422 (518)
228 TIGR00622 ssl1 transcription f 51.0 12 0.00025 31.5 2.1 55 339-405 3-67 (112)
229 PF10601 zf-LITAF-like: LITAF- 50.4 4 8.7E-05 31.4 -0.7 55 361-419 5-70 (73)
230 COG5243 HRD1 HRD ubiquitin lig 49.9 9 0.00019 38.6 1.5 13 405-417 332-344 (491)
231 KOG3579 Predicted E3 ubiquitin 49.0 11 0.00023 36.6 1.8 53 315-368 266-322 (352)
232 PF04710 Pellino: Pellino; In 47.8 6.1 0.00013 40.3 0.0 45 327-374 357-401 (416)
233 KOG3842 Adaptor protein Pellin 47.6 20 0.00043 35.4 3.4 44 328-374 371-414 (429)
234 KOG2231 Predicted E3 ubiquitin 47.0 13 0.00028 41.0 2.3 57 319-381 2-59 (669)
235 KOG4367 Predicted Zn-finger pr 46.1 12 0.00026 38.4 1.8 33 316-348 3-35 (699)
236 KOG2807 RNA polymerase II tran 45.7 7 0.00015 38.7 0.1 69 337-417 276-355 (378)
237 COG5219 Uncharacterized conser 45.2 11 0.00023 42.8 1.3 39 329-374 1461-1499(1525)
238 PRK14811 formamidopyrimidine-D 45.0 15 0.00031 36.2 2.2 36 404-441 232-267 (269)
239 COG5194 APC11 Component of SCF 43.7 23 0.0005 27.6 2.5 37 326-374 45-81 (88)
240 COG5236 Uncharacterized conser 43.2 4.8 0.0001 40.0 -1.5 45 364-419 62-109 (493)
241 PLN03077 Protein ECB2; Provisi 41.4 6.1E+02 0.013 29.3 15.1 113 14-135 229-349 (857)
242 KOG0978 E3 ubiquitin ligase in 40.5 4.7 0.0001 44.4 -2.2 47 363-420 643-691 (698)
243 KOG4628 Predicted E3 ubiquitin 39.7 40 0.00087 34.3 4.3 64 365-440 231-299 (348)
244 KOG0297 TNF receptor-associate 39.7 15 0.00033 38.2 1.5 55 315-381 19-74 (391)
245 PF01396 zf-C4_Topoisom: Topoi 39.2 22 0.00049 23.7 1.7 29 408-441 2-30 (39)
246 PLN03218 maturation of RBCL 1; 36.8 3.3E+02 0.0071 32.6 11.8 111 13-132 548-672 (1060)
247 PLN03081 pentatricopeptide (PP 36.7 6.5E+02 0.014 28.2 15.2 19 116-134 266-284 (697)
248 KOG3800 Predicted E3 ubiquitin 35.8 24 0.00053 34.5 2.0 30 331-371 19-48 (300)
249 KOG3161 Predicted E3 ubiquitin 35.2 15 0.00034 39.7 0.6 34 317-350 11-48 (861)
250 KOG1493 Anaphase-promoting com 34.8 9.4 0.0002 29.4 -0.7 37 328-373 44-80 (84)
251 PF10272 Tmpp129: Putative tra 34.7 66 0.0014 33.0 5.0 19 314-332 268-286 (358)
252 KOG2932 E3 ubiquitin ligase in 34.3 19 0.00042 35.5 1.1 55 365-432 92-148 (389)
253 smart00714 LITAF Possible memb 33.6 10 0.00022 28.6 -0.7 54 362-419 2-64 (67)
254 KOG0297 TNF receptor-associate 33.4 26 0.00056 36.5 2.0 47 363-420 21-69 (391)
255 PLN03081 pentatricopeptide (PP 33.3 7.3E+02 0.016 27.8 14.6 42 225-269 469-512 (697)
256 KOG4159 Predicted E3 ubiquitin 33.3 12 0.00026 38.8 -0.5 44 365-419 86-130 (398)
257 KOG0292 Vesicle coat complex C 32.7 76 0.0016 36.1 5.3 176 13-243 599-778 (1202)
258 PLN03218 maturation of RBCL 1; 32.5 5.1E+02 0.011 31.0 12.5 15 47-61 477-491 (1060)
259 KOG1812 Predicted E3 ubiquitin 32.5 31 0.00068 35.8 2.4 54 296-351 127-184 (384)
260 PF11793 FANCL_C: FANCL C-term 32.0 11 0.00024 28.8 -0.8 56 318-374 3-66 (70)
261 KOG0804 Cytoplasmic Zn-finger 31.8 30 0.00064 36.0 2.0 47 356-415 168-219 (493)
262 COG5222 Uncharacterized conser 31.5 18 0.0004 35.3 0.4 43 362-415 273-319 (427)
263 KOG1813 Predicted E3 ubiquitin 31.5 22 0.00048 34.9 1.0 44 365-419 243-287 (313)
264 KOG1002 Nucleotide excision re 30.4 24 0.00052 37.4 1.1 81 294-381 507-593 (791)
265 PF04641 Rtf2: Rtf2 RING-finge 30.2 40 0.00087 33.0 2.6 49 315-376 111-163 (260)
266 PRK14810 formamidopyrimidine-D 29.2 32 0.00068 33.9 1.7 31 405-437 242-272 (272)
267 KOG0311 Predicted E3 ubiquitin 29.0 3.6 7.7E-05 41.2 -4.9 47 364-421 44-93 (381)
268 PLN03077 Protein ECB2; Provisi 28.9 9.5E+02 0.021 27.7 14.9 49 183-243 296-348 (857)
269 KOG4692 Predicted E3 ubiquitin 28.8 13 0.00027 37.3 -1.2 47 362-419 421-468 (489)
270 PF10571 UPF0547: Uncharacteri 28.7 39 0.00085 20.4 1.4 19 396-414 3-21 (26)
271 COG5175 MOT2 Transcriptional r 28.6 12 0.00026 37.3 -1.4 51 364-422 15-68 (480)
272 PF13240 zinc_ribbon_2: zinc-r 28.3 35 0.00076 19.9 1.1 22 395-416 1-22 (23)
273 PRK13945 formamidopyrimidine-D 26.6 38 0.00082 33.6 1.7 32 404-437 251-282 (282)
274 cd07920 Pumilio Pumilio-family 26.5 3.5E+02 0.0075 26.8 8.8 121 12-132 23-149 (322)
275 KOG2068 MOT2 transcription fac 26.5 71 0.0015 32.1 3.5 54 365-426 251-306 (327)
276 KOG1814 Predicted E3 ubiquitin 26.4 24 0.00052 36.3 0.3 32 316-347 183-217 (445)
277 PRK01103 formamidopyrimidine/5 26.4 38 0.00083 33.4 1.7 30 406-437 244-273 (274)
278 PF07829 Toxin_14: Alpha-A con 25.5 57 0.0012 19.0 1.6 15 435-449 3-17 (26)
279 PF03854 zf-P11: P-11 zinc fin 25.5 17 0.00036 25.4 -0.7 45 365-420 4-48 (50)
280 PF06221 zf-C2HC5: Putative zi 24.4 42 0.0009 24.6 1.1 28 339-375 20-47 (57)
281 KOG2113 Predicted RNA binding 24.1 68 0.0015 31.8 2.9 49 317-379 343-392 (394)
282 KOG1952 Transcription factor N 24.1 84 0.0018 35.6 3.8 55 313-372 187-245 (950)
283 COG4306 Uncharacterized protei 23.9 21 0.00045 30.3 -0.5 23 394-420 29-52 (160)
284 PF14569 zf-UDP: Zinc-binding 23.5 58 0.0013 25.3 1.8 55 315-380 7-68 (80)
285 PRK10445 endonuclease VIII; Pr 23.4 47 0.001 32.5 1.7 31 405-437 233-263 (263)
286 PF10217 DUF2039: Uncharacteri 23.3 47 0.001 26.8 1.4 45 295-347 37-81 (92)
287 PF07191 zinc-ribbons_6: zinc- 22.9 16 0.00034 27.9 -1.3 9 365-373 3-11 (70)
288 COG5151 SSL1 RNA polymerase II 22.8 26 0.00057 34.5 -0.2 67 339-417 310-398 (421)
289 TIGR02652 conserved hypothetic 22.7 33 0.00071 29.8 0.4 16 363-378 9-24 (163)
290 KOG2660 Locus-specific chromos 22.6 8.9 0.00019 38.2 -3.5 48 363-421 15-64 (331)
291 PF14354 Lar_restr_allev: Rest 22.0 46 0.00099 24.3 1.0 16 362-377 2-17 (61)
292 KOG0826 Predicted E3 ubiquitin 21.7 85 0.0018 31.5 3.0 38 313-350 296-334 (357)
293 PF01671 ASFV_360: African swi 21.5 2E+02 0.0044 26.9 5.2 123 84-273 91-214 (215)
294 TIGR00577 fpg formamidopyrimid 21.2 54 0.0012 32.3 1.7 31 404-436 242-272 (272)
295 KOG0826 Predicted E3 ubiquitin 21.1 19 0.00041 35.9 -1.6 49 359-418 296-348 (357)
296 KOG2930 SCF ubiquitin ligase, 20.6 79 0.0017 26.0 2.1 35 326-372 72-106 (114)
297 PRK03564 formate dehydrogenase 20.5 77 0.0017 31.8 2.6 46 364-415 188-234 (309)
298 KOG0513 Ca2+-independent phosp 20.3 12 0.00025 40.2 -3.5 157 45-257 55-229 (503)
299 PF09654 DUF2396: Protein of u 20.3 39 0.00085 29.2 0.4 15 363-377 6-20 (161)
300 PF06827 zf-FPG_IleRS: Zinc fi 20.3 47 0.001 20.5 0.6 25 365-399 3-27 (30)
No 1
>PHA02791 ankyrin-like protein; Provisional
Probab=100.00 E-value=4.8e-36 Score=295.49 Aligned_cols=214 Identities=20% Similarity=0.195 Sum_probs=185.5
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
..+.++||+|++.|+.++++.|++.|++.+.. + +.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+.
T Consensus 28 ~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~ 103 (284)
T PHA02791 28 VHGHSALYYAIADNNVRLVCTLLNAGALKNLL--E--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVD 103 (284)
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC--C--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 44678999999999999999999999876543 2 3899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccCCCC-CcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335 88 YGHWEVVQTLLLFRCNVTRADYLSG-RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~~~G-~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (513)
.|+.++|++|+++|++++..+. .| .||||+|+..|+.+++++|++++..
T Consensus 104 ~g~~eivk~Ll~~gadin~~~~-~g~~TpL~~Aa~~g~~eivk~LL~~~~~----------------------------- 153 (284)
T PHA02791 104 SGNMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEIPS----------------------------- 153 (284)
T ss_pred cCCHHHHHHHHHCCCCcCccCC-CCCcHHHHHHHHcCCHHHHHHHHhcCCc-----------------------------
Confidence 9999999999999999988775 56 5899999999999999999975321
Q ss_pred HHHhccccc-CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCch-hHHHhhCCCHHHHHHHHHCC
Q 010335 167 LSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP-LHFAACGGNLKCCQVLLSRG 244 (513)
Q Consensus 167 ~~~~i~~~d-~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~Tp-Lh~Aa~~g~~eivk~LL~~G 244 (513)
..| ..|.||||+|+.+|+.++|++|+++|++++..+.. |.|| ||+|+..|+.++|++|+++|
T Consensus 154 ------~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~----------g~t~~L~~Aa~~~~~e~v~lLl~~G 217 (284)
T PHA02791 154 ------TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL----------LFIPDIKLAIDNKDLEMLQALFKYD 217 (284)
T ss_pred ------ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCC----------CCChHHHHHHHcCCHHHHHHHHHCC
Confidence 011 24789999999999999999999999999998866 7776 99999999999999999999
Q ss_pred CCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335 245 ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278 (513)
Q Consensus 245 ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~ 278 (513)
++++.+|..| ++| ++.+++++|+++-.
T Consensus 218 a~in~~~~~~-~~l------~~~e~~~~ll~~~~ 244 (284)
T PHA02791 218 INIYSVNLEN-VLL------DDAEIAKMIIEKHV 244 (284)
T ss_pred CCCccCcccC-ccC------CCHHHHHHHHHhhh
Confidence 9999999855 566 77788888876543
No 2
>PHA02875 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=310.17 Aligned_cols=224 Identities=24% Similarity=0.243 Sum_probs=204.9
Q ss_pred cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH 90 (513)
Q Consensus 11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~ 90 (513)
..+|+.|++.|+++++++|++.|++++..... |.||||+|+..|+.+++++|+++|++++..+..+.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~--g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 3 QVALCDAILFGELDIARRLLDIGINPNFEIYD--GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred chHHHHHHHhCCHHHHHHHHHCCCCCCccCCC--CCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 46899999999999999999999988765444 4999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHh
Q 010335 91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 170 (513)
Q Consensus 91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (513)
.++|++|++.|+......+..|.||||+|+..|+.+++++|++.|.+
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad--------------------------------- 127 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD--------------------------------- 127 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC---------------------------------
Confidence 99999999999987665555899999999999999999999988764
Q ss_pred cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCc
Q 010335 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 250 (513)
Q Consensus 171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~ 250 (513)
++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++..
T Consensus 128 ~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~----------g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~ 197 (413)
T PHA02875 128 PDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCC----------GCTPLIIAMAKGDIAICKMLLDSGANIDYF 197 (413)
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHhCCCCCCcC
Confidence 5567778999999999999999999999999999999876 999999999999999999999999999999
Q ss_pred CCCCC-cHHHHHHHcCccchhhhcCCCCCC
Q 010335 251 NCNGW-LPLDVARMWGRHWLEPLLAPSSDA 279 (513)
Q Consensus 251 d~~G~-TpL~~A~~~g~~~iv~lL~~~~~~ 279 (513)
+..|. ||+|+|+..|+.+++++|.+.+..
T Consensus 198 ~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad 227 (413)
T PHA02875 198 GKNGCVAALCYAIENNKIDIVRLFIKRGAD 227 (413)
T ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHCCcC
Confidence 98874 899999999999999888775543
No 3
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-36 Score=261.14 Aligned_cols=205 Identities=27% Similarity=0.342 Sum_probs=187.4
Q ss_pred HHHHHHHcCCHHHHHHHHhcCC-CCccccCCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCChHHHHHHHcCC
Q 010335 13 RLVSAARDGDFVEAKMLLDCNP-CLAKYSTFGGLNSPLHFAAAKGHNEIVALLL-ENGADVNSRNYCGQTALMQACRYGH 90 (513)
Q Consensus 13 ~L~~Aa~~G~~e~vk~LL~~~~-~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL-~~Gadvn~~d~~g~TpLh~A~~~g~ 90 (513)
..+.+.+......++.|++..+ .++.. ++.+|+||||||+..|+.+||++|+ +.+..+|.+|..|+||||.|+..|+
T Consensus 6 ~~~~~~~~~~~~kveel~~s~~kSL~~r-~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~ 84 (226)
T KOG4412|consen 6 LGKAICENCEEFKVEELIQSDPKSLNAR-DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN 84 (226)
T ss_pred hHHHHHhhchHHHHHHHHhcChhhhhcc-ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc
Confidence 3677777888888999999988 44444 4444599999999999999999999 5688899999999999999999999
Q ss_pred HHHHHHHHhc-CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335 91 WEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK 169 (513)
Q Consensus 91 ~eiVk~LL~~-ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
.|+|+.|+.+ |++++...+ .|.|+||||+..|..+++++|+++++.
T Consensus 85 ~evVk~Ll~r~~advna~tn-~G~T~LHyAagK~r~eIaqlLle~ga~-------------------------------- 131 (226)
T KOG4412|consen 85 DEVVKELLNRSGADVNATTN-GGQTCLHYAAGKGRLEIAQLLLEKGAL-------------------------------- 131 (226)
T ss_pred HHHHHHHhcCCCCCcceecC-CCcceehhhhcCChhhHHHHHHhcCCC--------------------------------
Confidence 9999999998 999999886 999999999999999999999988754
Q ss_pred hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335 170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 249 (513)
Q Consensus 170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~ 249 (513)
++.+|..|.||||.||.-|.++++++|+..|+.+|..|.. |+||||.|...|+.++..+|+++||+++.
T Consensus 132 -i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~----------G~TpL~~al~e~~~d~a~lLV~~gAd~~~ 200 (226)
T KOG4412|consen 132 -IRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKY----------GFTPLHHALAEGHPDVAVLLVRAGADTDR 200 (226)
T ss_pred -CcccccccCchhHHHHhccchhhHHHHHhcCCCCCccccc----------CccHHHHHHhccCchHHHHHHHhccceee
Confidence 7889999999999999999999999999999999999988 99999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHH
Q 010335 250 LNCNGWLPLDVARM 263 (513)
Q Consensus 250 ~d~~G~TpL~~A~~ 263 (513)
.|+.| ||+.+|.-
T Consensus 201 edke~-t~~~~a~~ 213 (226)
T KOG4412|consen 201 EDKEG-TALRIACN 213 (226)
T ss_pred ccccC-chHHHHHH
Confidence 99998 99887753
No 4
>PHA02791 ankyrin-like protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=284.93 Aligned_cols=213 Identities=19% Similarity=0.114 Sum_probs=185.9
Q ss_pred cCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHh
Q 010335 20 DGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLL 99 (513)
Q Consensus 20 ~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~ 99 (513)
.++.+++++|+++++.. .+..|+||||+|+..|+.+++++|++.|++++..+ |.||||+|+..|+.++|++|+.
T Consensus 9 ~~~~~~~~~Lis~~a~~----~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~ 82 (284)
T PHA02791 9 WKSKQLKSFLSSKDAFK----ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLF 82 (284)
T ss_pred cCHHHHHHHHHhCCCCC----CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHH
Confidence 57899999999998753 34445999999999999999999999999998875 7899999999999999999999
Q ss_pred cCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCC
Q 010335 100 FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGI 179 (513)
Q Consensus 100 ~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~ 179 (513)
+|++++..+. .|+||||+|+..|+.+++++|++.+.. ++..+..|+
T Consensus 83 ~Gadvn~~d~-~G~TpLh~Aa~~g~~eivk~Ll~~gad---------------------------------in~~~~~g~ 128 (284)
T PHA02791 83 SGMDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWR---------------------------------LMFYGKTGW 128 (284)
T ss_pred CCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC---------------------------------cCccCCCCC
Confidence 9999998886 899999999999999999999987654 555666674
Q ss_pred -cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcH-
Q 010335 180 -TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP- 257 (513)
Q Consensus 180 -TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~Tp- 257 (513)
||||+|+..|+.++|++|++++.+.. +.. .|.||||+|+..|+.++|++|+++|++++.+|..|.||
T Consensus 129 ~TpL~~Aa~~g~~eivk~LL~~~~~~~--d~~---------~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~ 197 (284)
T PHA02791 129 KTSFYHAVMLNDVSIVSYFLSEIPSTF--DLA---------ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPD 197 (284)
T ss_pred cHHHHHHHHcCCHHHHHHHHhcCCccc--ccc---------cCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChH
Confidence 89999999999999999999876542 211 28999999999999999999999999999999999987
Q ss_pred HHHHHHcCccchhhhcCCC-CCCCCCC
Q 010335 258 LDVARMWGRHWLEPLLAPS-SDAVMPR 283 (513)
Q Consensus 258 L~~A~~~g~~~iv~lL~~~-~~~~~~~ 283 (513)
||+|+..|+.+++++|+.. ++++...
T Consensus 198 L~~Aa~~~~~e~v~lLl~~Ga~in~~~ 224 (284)
T PHA02791 198 IKLAIDNKDLEMLQALFKYDINIYSVN 224 (284)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCccCc
Confidence 9999999999999887664 4444443
No 5
>PHA03100 ankyrin repeat protein; Provisional
Probab=100.00 E-value=9e-35 Score=310.59 Aligned_cols=241 Identities=28% Similarity=0.359 Sum_probs=216.2
Q ss_pred CCCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHH-----HHHcCCHHHHHHHHHCCCCCCCCCCCCChH
Q 010335 7 CSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHF-----AAAKGHNEIVALLLENGADVNSRNYCGQTA 81 (513)
Q Consensus 7 ~s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~-----Aa~~g~~eivk~LL~~Gadvn~~d~~g~Tp 81 (513)
...+.++||.|++.|+.++|++|++.|.+++.....+ .||||+ |+..|+.+++++|+++|++++..|..|.||
T Consensus 32 ~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~--~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tp 109 (480)
T PHA03100 32 YKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNN--STPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITP 109 (480)
T ss_pred hcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccC--cCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCch
Confidence 4456789999999999999999999999887654444 899999 999999999999999999999999999999
Q ss_pred HHHHH--HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHHccCCCCccccchhhhcccCCCCch
Q 010335 82 LMQAC--RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG--HVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS 157 (513)
Q Consensus 82 Lh~A~--~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (513)
||+|+ ..|+.++|++|+++|++++..+. .|.||||+|+..| +.+++++|++.+..
T Consensus 110 L~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d-------------------- 168 (480)
T PHA03100 110 LLYAISKKSNSYSIVEYLLDNGANVNIKNS-DGENLLHLYLESNKIDLKILKLLIDKGVD-------------------- 168 (480)
T ss_pred hhHHHhcccChHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCCChHHHHHHHHHCCCC--------------------
Confidence 99999 99999999999999999998885 8999999999999 99999999988754
Q ss_pred hhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCC------CchhHHHhhC
Q 010335 158 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG------STPLHFAACG 231 (513)
Q Consensus 158 ~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G------~TpLh~Aa~~ 231 (513)
++..+..|.||||+|+..|+.+++++|+++|++++..+.. | .||||+|+..
T Consensus 169 -------------in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~----------~~~~~~~~t~l~~a~~~ 225 (480)
T PHA03100 169 -------------INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIE----------TLLFTIFETPLHIAACY 225 (480)
T ss_pred -------------cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCC----------CCcHHHHHhHHHHHHHh
Confidence 5667778999999999999999999999999999988865 6 8999999999
Q ss_pred CC--HHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC-CCCCCCCCCCccccchhHH
Q 010335 232 GN--LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD-AVMPRFHPSNYLSLPLLSV 297 (513)
Q Consensus 232 g~--~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~-~~~~~~~~~~~~~~~l~~~ 297 (513)
|+ .+++++|+++|++++.+|..|.||||+|+..|+.+++++|.+.+. .+.. +..+.+|+..+
T Consensus 226 ~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~----d~~g~tpl~~A 290 (480)
T PHA03100 226 NEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLV----NKYGDTPLHIA 290 (480)
T ss_pred CcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc----CCCCCcHHHHH
Confidence 99 999999999999999999999999999999999999988877554 3322 55666775443
No 6
>PHA02874 ankyrin repeat protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=303.78 Aligned_cols=209 Identities=27% Similarity=0.392 Sum_probs=113.8
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH
Q 010335 12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHW 91 (513)
Q Consensus 12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~ 91 (513)
..|..|+..||++.++.|++.++....... ..+.||||+|+..|+.++|++|++.|++++..+..|.||||+|+..|+.
T Consensus 3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~-~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~ 81 (434)
T PHA02874 3 QDLRMCIYSGDIEAIEKIIKNKGNCINISV-DETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAH 81 (434)
T ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 356666666666666666665443222211 1235666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCC-----------------------CCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhh
Q 010335 92 EVVQTLLLFRCN-----------------------VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI 148 (513)
Q Consensus 92 eiVk~LL~~ga~-----------------------~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~ 148 (513)
++|++|+++|++ ++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 82 ~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~-~g~T~Lh~A~~~~~~~~v~~Ll~~gad----------- 149 (434)
T PHA02874 82 DIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDA-ELKTFLHYAIKKGDLESIKMLFEYGAD----------- 149 (434)
T ss_pred HHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCC-CCccHHHHHHHCCCHHHHHHHHhCCCC-----------
Confidence 666666655543 233332 566666666666666666666655443
Q ss_pred cccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHH
Q 010335 149 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 228 (513)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A 228 (513)
++.+|..|.||||+|+.+|+.+++++|+++|++++..+.. |.||||+|
T Consensus 150 ----------------------~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~----------g~tpL~~A 197 (434)
T PHA02874 150 ----------------------VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNN----------GESPLHNA 197 (434)
T ss_pred ----------------------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCC----------CCCHHHHH
Confidence 2333444444444444444444444444444444444433 44444444
Q ss_pred hhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Q 010335 229 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265 (513)
Q Consensus 229 a~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g 265 (513)
+..|+.+++++|+++|++++.++..|+||||+|+..+
T Consensus 198 ~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~ 234 (434)
T PHA02874 198 AEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHN 234 (434)
T ss_pred HHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCC
Confidence 4444444444444444444444444444444444433
No 7
>PHA02874 ankyrin repeat protein; Provisional
Probab=100.00 E-value=3.9e-34 Score=301.74 Aligned_cols=239 Identities=25% Similarity=0.307 Sum_probs=207.8
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC------------------
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA------------------ 69 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Ga------------------ 69 (513)
..+.++||.|++.|+.++|++|++.|++++.....+ .||||+|+..|+.+++++|+++|+
T Consensus 33 ~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~--~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~l 110 (434)
T PHA02874 33 DETTTPLIDAIRSGDAKIVELFIKHGADINHINTKI--PHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTI 110 (434)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHH
Confidence 345789999999999999999999999987655444 899999999999999999998765
Q ss_pred -----CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccc
Q 010335 70 -----DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 144 (513)
Q Consensus 70 -----dvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 144 (513)
+++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 111 l~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~g~~------- 182 (434)
T PHA02874 111 LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD-NGCYPIHIAIKHNFFDIIKLLLEKGAY------- 182 (434)
T ss_pred HHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHCCcHHHHHHHHHCCCC-------
Confidence 4677888999999999999999999999999999998885 899999999999999999999987653
Q ss_pred hhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCch
Q 010335 145 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224 (513)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~Tp 224 (513)
++..+..|.||||+|+..|+.+++++|++.|++++..+.. |.||
T Consensus 183 --------------------------~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~----------g~Tp 226 (434)
T PHA02874 183 --------------------------ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN----------GFTP 226 (434)
T ss_pred --------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCC----------CCCH
Confidence 5667788999999999999999999999999999988866 9999
Q ss_pred hHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC-ccchhhhcCCC-CCCCCCCCCCCCccccchhHHH
Q 010335 225 LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG-RHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSVL 298 (513)
Q Consensus 225 Lh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g-~~~iv~lL~~~-~~~~~~~~~~~~~~~~~l~~~l 298 (513)
||+|+..+. +++++|+ .|++++.+|.+|+||||+|+..+ +.+++++|... ++.+.. +..+.+|+..+.
T Consensus 227 L~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~----d~~g~TpL~~A~ 296 (434)
T PHA02874 227 LHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIK----DNKGENPIDTAF 296 (434)
T ss_pred HHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCC----CCCCCCHHHHHH
Confidence 999999875 5667766 69999999999999999999876 67888877764 444443 556777765443
No 8
>PHA03100 ankyrin repeat protein; Provisional
Probab=100.00 E-value=3.5e-34 Score=305.99 Aligned_cols=224 Identities=24% Similarity=0.284 Sum_probs=206.1
Q ss_pred CCcHHHHH-----HHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCCCCCCCCCChH
Q 010335 9 ASGERLVS-----AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAA--AKGHNEIVALLLENGADVNSRNYCGQTA 81 (513)
Q Consensus 9 ~~~~~L~~-----Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa--~~g~~eivk~LL~~Gadvn~~d~~g~Tp 81 (513)
.+.++||. |+..|+.++++.|++.|++++.... .|.||||+|+ ..|+.+++++|+++|++++..|..|.||
T Consensus 67 ~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~--~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~ 144 (480)
T PHA03100 67 NNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDN--NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENL 144 (480)
T ss_pred cCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCC--CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcH
Confidence 35679999 9999999999999999999855444 3499999999 9999999999999999999999999999
Q ss_pred HHHHHHcC--CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhh
Q 010335 82 LMQACRYG--HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVK 159 (513)
Q Consensus 82 Lh~A~~~g--~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (513)
||+|+..| +.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 145 L~~A~~~~~~~~~iv~~Ll~~g~din~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~ga~---------------------- 201 (480)
T PHA03100 145 LHLYLESNKIDLKILKLLIDKGVDINAKNR-YGYTPLHIAVEKGNIDVIKFLLDNGAD---------------------- 201 (480)
T ss_pred HHHHHHcCCChHHHHHHHHHCCCCcccccC-CCCCHHHHHHHhCCHHHHHHHHHcCCC----------------------
Confidence 99999999 99999999999999998886 999999999999999999999988764
Q ss_pred hhhchhHHHHhcccccCCC------CcHHHHHHHcCC--HHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhC
Q 010335 160 SKCDQSALSKFVNKAADGG------ITALHMAALNGY--FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231 (513)
Q Consensus 160 ~~~~~~~~~~~i~~~d~~G------~TpLh~Aa~~g~--~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~ 231 (513)
++..+..| .||||+|+..|+ .+++++|+++|++++..+.. |.||||+|+..
T Consensus 202 -----------~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~----------g~TpL~~A~~~ 260 (480)
T PHA03100 202 -----------INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVY----------GFTPLHYAVYN 260 (480)
T ss_pred -----------ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHHHc
Confidence 33344445 799999999999 99999999999999999976 99999999999
Q ss_pred CCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278 (513)
Q Consensus 232 g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~ 278 (513)
|+.+++++|+++|+|++.+|..|.|||++|+..++.+++++|.+.+.
T Consensus 261 ~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~ 307 (480)
T PHA03100 261 NNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 307 (480)
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999988877654
No 9
>PHA02878 ankyrin repeat protein; Provisional
Probab=100.00 E-value=7.6e-34 Score=303.05 Aligned_cols=207 Identities=24% Similarity=0.255 Sum_probs=122.5
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHH------------------------
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLL------------------------ 65 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL------------------------ 65 (513)
+-+|||.|++.|+.++|++|+++|++++..... |.||||+|+..|+.+++++|+
T Consensus 37 ~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~--g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ 114 (477)
T PHA02878 37 PFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHR--DLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV 114 (477)
T ss_pred CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence 346899999999999999999999988765544 499999999987765555444
Q ss_pred ----------------------------------------HCCCCCCCCCCC-CChHHHHHHHcCCHHHHHHHHhcCCCC
Q 010335 66 ----------------------------------------ENGADVNSRNYC-GQTALMQACRYGHWEVVQTLLLFRCNV 104 (513)
Q Consensus 66 ----------------------------------------~~Gadvn~~d~~-g~TpLh~A~~~g~~eiVk~LL~~ga~~ 104 (513)
++|++++..|.. |.||||+|+..|+.++|++|+++|+++
T Consensus 115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~ 194 (477)
T PHA02878 115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV 194 (477)
T ss_pred HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC
Confidence 445555555544 555555555555555555555555555
Q ss_pred CcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHH
Q 010335 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHM 184 (513)
Q Consensus 105 ~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~ 184 (513)
+..+. .|.||||+|+..|+.+++++|++.+.. ++.+|..|.||||+
T Consensus 195 n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~ga~---------------------------------in~~d~~g~TpLh~ 240 (477)
T PHA02878 195 NIPDK-TNNSPLHHAVKHYNKPIVHILLENGAS---------------------------------TDARDKCGNTPLHI 240 (477)
T ss_pred CCcCC-CCCCHHHHHHHhCCHHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHH
Confidence 54443 455555555555555555555544332 34444455555555
Q ss_pred HHHc-CCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHH
Q 010335 185 AALN-GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM 263 (513)
Q Consensus 185 Aa~~-g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~ 263 (513)
|+.. ++.+++++|+++|++++..+.. .|.||||+| .++.+++++|+++|+|++.+|.+|+||||+|+.
T Consensus 241 A~~~~~~~~iv~~Ll~~gadvn~~~~~---------~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~ 309 (477)
T PHA02878 241 SVGYCKDYDILKLLLEHGVDVNAKSYI---------LGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVK 309 (477)
T ss_pred HHHhcCCHHHHHHHHHcCCCCCccCCC---------CCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 5543 3455555555555555544421 155555555 344455555555555555555555555555554
No 10
>PHA03095 ankyrin-like protein; Provisional
Probab=100.00 E-value=4.9e-34 Score=304.12 Aligned_cols=253 Identities=21% Similarity=0.164 Sum_probs=194.7
Q ss_pred CCcHHHHHHHHcC---CHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCChHHHH
Q 010335 9 ASGERLVSAARDG---DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG-HNEIVALLLENGADVNSRNYCGQTALMQ 84 (513)
Q Consensus 9 ~~~~~L~~Aa~~G---~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g-~~eivk~LL~~Gadvn~~d~~g~TpLh~ 84 (513)
.+.++||.|+..| +.+++++|++.|++++..... |.||||+|+..| +.+++++|+++|++++.+|..|.||||+
T Consensus 46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~--g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~ 123 (471)
T PHA03095 46 YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERC--GFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV 123 (471)
T ss_pred CCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 3567888888888 888888888888888766553 488888888888 5888888888888888888888888888
Q ss_pred HH--HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHHccCCCCcccc---chhhhccc--CCCC
Q 010335 85 AC--RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG--HVRCIRLVVADFVPSVPFEV---MNTQIEGD--RGDG 155 (513)
Q Consensus 85 A~--~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~---~~~~~~~~--~~~~ 155 (513)
|+ ..++.+++++|+++|++++..+. .|.||||+|+..+ +.+++++|++.+........ ...+.... ....
T Consensus 124 a~~~~~~~~~iv~~Ll~~gad~~~~d~-~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~ 202 (471)
T PHA03095 124 YLSGFNINPKVIRLLLRKGADVNALDL-YGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRA 202 (471)
T ss_pred HhhCCcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcH
Confidence 88 45678888888888888887775 8888888888765 67888888887665432211 01111000 0000
Q ss_pred chhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCH--HHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCC
Q 010335 156 SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF--DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 233 (513)
Q Consensus 156 ~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~--eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~ 233 (513)
..... .......++.+|..|+||||+|+..|+. .+++.|++.|++++..+.. |.||||+|+..|+
T Consensus 203 ~i~~~---Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~----------g~TpLh~A~~~~~ 269 (471)
T PHA03095 203 RIVRE---LIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRY----------GQTPLHYAAVFNN 269 (471)
T ss_pred HHHHH---HHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCC
Confidence 00000 0111223577888999999999998874 6888999999999999866 9999999999999
Q ss_pred HHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC
Q 010335 234 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS 277 (513)
Q Consensus 234 ~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~ 277 (513)
.+++++|+++|||++.+|.+|+||||+|+..|+.+++++|++..
T Consensus 270 ~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~ 313 (471)
T PHA03095 270 PRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKN 313 (471)
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999998888776644
No 11
>PHA02946 ankyin-like protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=296.14 Aligned_cols=222 Identities=21% Similarity=0.171 Sum_probs=191.0
Q ss_pred CcHHHHHHH--HcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 10 SGERLVSAA--RDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 10 ~~~~L~~Aa--~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
....||.++ ..++.+++++|+++|++++..+.. |.||||+|+..|+.++|++|+++|+++|.+|..|.||||+|+.
T Consensus 37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~--G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~ 114 (446)
T PHA02946 37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETDDD--GNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSG 114 (446)
T ss_pred CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCC--CCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence 346777765 455789999999999988765544 4899999999999999999999999999999999999999988
Q ss_pred cC--CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchh
Q 010335 88 YG--HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165 (513)
Q Consensus 88 ~g--~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (513)
.+ ..+++++|+++|++++...+..|.|||| |+..++.+++++|++.+..
T Consensus 115 ~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad---------------------------- 165 (446)
T PHA02946 115 TDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE---------------------------- 165 (446)
T ss_pred cCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccc----------------------------
Confidence 76 4889999999999998654458999997 6667899999999976643
Q ss_pred HHHHhcccccCCCCcHHHHHHHcC--CHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCC--CHHHHHHHH
Q 010335 166 ALSKFVNKAADGGITALHMAALNG--YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG--NLKCCQVLL 241 (513)
Q Consensus 166 ~~~~~i~~~d~~G~TpLh~Aa~~g--~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g--~~eivk~LL 241 (513)
++..|..|+||||+|+..+ +.+++++|+++|++++..|.. |.||||+|+..+ +.+++++|+
T Consensus 166 -----~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~----------G~TpLH~Aa~~~~~~~~iv~lLl 230 (446)
T PHA02946 166 -----ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHD----------GNTPLHIVCSKTVKNVDIINLLL 230 (446)
T ss_pred -----ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHcCCCcHHHHHHHH
Confidence 6778899999999998755 479999999999999999976 999999999976 889999999
Q ss_pred HCCCCCCCcCCCCCcHHHHHHHcCc-cchhhhcCCCCC
Q 010335 242 SRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278 (513)
Q Consensus 242 ~~Gad~~~~d~~G~TpL~~A~~~g~-~~iv~lL~~~~~ 278 (513)
+ |++++.+|..|+||||+|+..++ .+++++|...+.
T Consensus 231 ~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~ 267 (446)
T PHA02946 231 P-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSN 267 (446)
T ss_pred c-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCC
Confidence 5 99999999999999999999988 477777766553
No 12
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=100.00 E-value=1e-33 Score=307.46 Aligned_cols=263 Identities=17% Similarity=0.077 Sum_probs=193.2
Q ss_pred CCcHHHHHHHH--cCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCC--HHHHHHHHHCCCCCCCCCCCCChHHHH
Q 010335 9 ASGERLVSAAR--DGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGH--NEIVALLLENGADVNSRNYCGQTALMQ 84 (513)
Q Consensus 9 ~~~~~L~~Aa~--~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~--~eivk~LL~~Gadvn~~d~~g~TpLh~ 84 (513)
.+.++||.|+. .++.+++++|+++|++++..+..+ .||||+|+..|+ .++|++|+++|+|+|.+|..|+||||+
T Consensus 176 ~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G--~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~ 253 (764)
T PHA02716 176 TGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHL--ITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMT 253 (764)
T ss_pred CCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCC--CCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 45678998864 468999999999999988755544 899999999995 499999999999999999999999997
Q ss_pred H-------------------------------------HHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHH--cCCH
Q 010335 85 A-------------------------------------CRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV--NGHV 125 (513)
Q Consensus 85 A-------------------------------------~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~--~g~~ 125 (513)
| +..|+.++|++|+++|++++..+. .|+||||+|+. .++.
T Consensus 254 Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~-~G~TPLH~Aaa~~~~~~ 332 (764)
T PHA02716 254 YIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDS-AGRTCLHQYILRHNIST 332 (764)
T ss_pred HHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCC-CCCCHHHHHHHHhCCCc
Confidence 5 445788999999999999998875 89999999864 4688
Q ss_pred HHHHHHHHccCCCCccc---cchhhhcccC--------------CCCchhhhhhchhHHHHhcccccCCCCcHHHH----
Q 010335 126 RCIRLVVADFVPSVPFE---VMNTQIEGDR--------------GDGSSVKSKCDQSALSKFVNKAADGGITALHM---- 184 (513)
Q Consensus 126 ~iv~~Ll~~~~~~~~~~---~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~---- 184 (513)
+++++|++.|+...... ....+.+... .....+... ......++.++..|+||||.
T Consensus 333 eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklL---L~~GADIn~kn~~G~TPLh~y~~~ 409 (764)
T PHA02716 333 DIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCL---ISLGADITAVNCLGYTPLTSYICT 409 (764)
T ss_pred hHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHH---HHCCCCCCCcCCCCCChHHHHHHH
Confidence 99999999887543221 1111111100 000001100 11223467788899999994
Q ss_pred HHHcCCHHHHHHHHHcCCCcccccc-----------cC----------C----------------ccc------------
Q 010335 185 AALNGYFDCVQLLLDLHANVSAVTF-----------HY----------G----------------TSM------------ 215 (513)
Q Consensus 185 Aa~~g~~eiv~~Ll~~Gadvn~~~~-----------~~----------~----------------~~~------------ 215 (513)
|...++.+++++|++.|+.....+. .. + ...
T Consensus 410 a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~n 489 (764)
T PHA02716 410 AQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYN 489 (764)
T ss_pred HHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhcc
Confidence 3335789999999988754221110 00 0 000
Q ss_pred -c-ccCCCCchhHHHhhCCCHH-----HHHHHHHCCCCCCCcCCCCCcHHHHHHHcCcc-----chhhhcCCCC
Q 010335 216 -D-LIGAGSTPLHFAACGGNLK-----CCQVLLSRGASRMSLNCNGWLPLDVARMWGRH-----WLEPLLAPSS 277 (513)
Q Consensus 216 -~-~~~~G~TpLh~Aa~~g~~e-----ivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~-----~iv~lL~~~~ 277 (513)
+ ....|+||||+|+..|+.+ ++++|+++|+|++.+|.+|+||||+|+++|+. +++++|++.+
T Consensus 490 vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~g 563 (764)
T PHA02716 490 NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKR 563 (764)
T ss_pred ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcC
Confidence 0 0135999999999998874 55999999999999999999999999999976 8888777644
No 13
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=289.33 Aligned_cols=209 Identities=32% Similarity=0.424 Sum_probs=193.7
Q ss_pred cHHHHHHHHcCCHHHHHHHHhc-CCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHc
Q 010335 11 GERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQTALMQACRY 88 (513)
Q Consensus 11 ~~~L~~Aa~~G~~e~vk~LL~~-~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d-~~g~TpLh~A~~~ 88 (513)
...++.|+.+|+++.|+.|++. +.+++..+. .|-|+||+||.+++++++++|+++|+|||..+ .-+.||||+|+++
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~--~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~ 122 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVESEGESVNNPDR--EGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN 122 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCc--CCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence 4578999999999999999998 777765544 45999999999999999999999999999998 6789999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335 89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168 (513)
Q Consensus 89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
|+..+|++|+++||+++..|. +|.+|||+|++.|+.-+|-+|+.++.+
T Consensus 123 G~~~vv~lLlqhGAdpt~~D~-~G~~~lHla~~~~~~~~vayll~~~~d------------------------------- 170 (600)
T KOG0509|consen 123 GHISVVDLLLQHGADPTLKDK-QGLTPLHLAAQFGHTALVAYLLSKGAD------------------------------- 170 (600)
T ss_pred CcHHHHHHHHHcCCCCceecC-CCCcHHHHHHHhCchHHHHHHHHhccc-------------------------------
Confidence 999999999999999999996 999999999999999999999987643
Q ss_pred HhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCC
Q 010335 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 248 (513)
Q Consensus 169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~ 248 (513)
++.+|.+|+||||+||.+|+...+..||+.|+.++..|.. .|+||||+|+..||..++++|++.|++.+
T Consensus 171 --~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~---------~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d 239 (600)
T KOG0509|consen 171 --IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDN---------HGNTPLHWAVVGGNLTAVKLLLEGGADLD 239 (600)
T ss_pred --CCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccc---------cCCchHHHHHhcCCcceEehhhhcCCccc
Confidence 7899999999999999999988899999999999999954 39999999999999999998888899999
Q ss_pred CcCCCCCcHHHHHHHc
Q 010335 249 SLNCNGWLPLDVARMW 264 (513)
Q Consensus 249 ~~d~~G~TpL~~A~~~ 264 (513)
.+|.+|.||+++|.+.
T Consensus 240 ~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 240 KTNTNGKTPFDLAQER 255 (600)
T ss_pred ccccCCCCHHHHHHHh
Confidence 9999999999999877
No 14
>PHA02946 ankyin-like protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=289.49 Aligned_cols=254 Identities=16% Similarity=0.104 Sum_probs=167.6
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCC--HHHHHHHHHCCCCCCC-CCCCCChHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGH--NEIVALLLENGADVNS-RNYCGQTALMQ 84 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~--~eivk~LL~~Gadvn~-~d~~g~TpLh~ 84 (513)
..+.++||.|++.|+.+++++||++|++++..+..+ .||||+|+..++ .+++++|+++|++++. .|..|.||||
T Consensus 70 ~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g--~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~- 146 (446)
T PHA02946 70 DDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQH--KTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL- 146 (446)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCC--CCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-
Confidence 456789999999999999999999999988655544 899999998764 8999999999999995 6899999997
Q ss_pred HHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHHccCCCCc---cccchhhhcccCCCC--ch
Q 010335 85 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG--HVRCIRLVVADFVPSVP---FEVMNTQIEGDRGDG--SS 157 (513)
Q Consensus 85 A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g--~~~iv~~Ll~~~~~~~~---~~~~~~~~~~~~~~~--~~ 157 (513)
|+..|+.+++++|+++|++++..+. .|+||||+|+..+ +.+++++|++.+.+... ......+.+...+.. ..
T Consensus 147 aa~~~~~~vv~~Ll~~gad~~~~d~-~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~i 225 (446)
T PHA02946 147 ACTDPSERVFKKIMSIGFEARIVDK-FGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDI 225 (446)
T ss_pred HHHCCChHHHHHHHhccccccccCC-CCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHH
Confidence 7778999999999999999998886 9999999998755 57899999998775321 111222222211100 01
Q ss_pred hhhhhchhHHHHhcccccCCCCcHHHHHHHcCC-HHHHHHHHHcCCCcccccccCCcc---------cccc--CCCCchh
Q 010335 158 VKSKCDQSALSKFVNKAADGGITALHMAALNGY-FDCVQLLLDLHANVSAVTFHYGTS---------MDLI--GAGSTPL 225 (513)
Q Consensus 158 ~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~-~eiv~~Ll~~Gadvn~~~~~~~~~---------~~~~--~~G~TpL 225 (513)
+.... ....++.+|..|.||||+|+..++ .+++++|+++|++++....+.... +... ..|.|||
T Consensus 226 v~lLl----~gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpL 301 (446)
T PHA02946 226 INLLL----PSTDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDF 301 (446)
T ss_pred HHHHH----cCCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHH
Confidence 11000 013355555566666666666555 355666666655544322111000 0000 1244666
Q ss_pred HHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335 226 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS 276 (513)
Q Consensus 226 h~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~ 276 (513)
|+|+..|+.++|++||++|+ +|+||||+|+..++.+++++|..+
T Consensus 302 h~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~ 345 (446)
T PHA02946 302 KMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYETMVDYLLFN 345 (446)
T ss_pred HHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHHHHHHHHHHC
Confidence 66666666666666665542 456666666666666665555443
No 15
>PHA03095 ankyrin-like protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=292.72 Aligned_cols=263 Identities=24% Similarity=0.236 Sum_probs=210.7
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcC---CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC-C
Q 010335 15 VSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG---HNEIVALLLENGADVNSRNYCGQTALMQACRYG-H 90 (513)
Q Consensus 15 ~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g---~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g-~ 90 (513)
+.|+..+++++|++|+++|++++.....+ .||||+|+..| +.+++++|+++|+|+|.+|..|.||||+|+..| +
T Consensus 19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g--~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~ 96 (471)
T PHA03095 19 LLNASNVTVEEVRRLLAAGADVNFRGEYG--KTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATT 96 (471)
T ss_pred HHcCCCCCHHHHHHHHHcCCCcccCCCCC--CCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCc
Confidence 45688899999999999999987655544 89999999999 999999999999999999999999999999999 5
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCcHHHHHH--HcCCHHHHHHHHHccCCCCcccc---chhhhcccCCC--Cchhhhhhc
Q 010335 91 WEVVQTLLLFRCNVTRADYLSGRTALHFAA--VNGHVRCIRLVVADFVPSVPFEV---MNTQIEGDRGD--GSSVKSKCD 163 (513)
Q Consensus 91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~ 163 (513)
.+++++|+++|++++..+. .|.||||+|+ ..++.+++++|++.+........ ...+....... ...+...
T Consensus 97 ~~iv~lLl~~ga~in~~~~-~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~L-- 173 (471)
T PHA03095 97 LDVIKLLIKAGADVNAKDK-VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLL-- 173 (471)
T ss_pred HHHHHHHHHcCCCCCCCCC-CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHH--
Confidence 9999999999999999886 8999999999 56689999999998875433211 11111111110 0001110
Q ss_pred hhHHHHhcccccCCCCcHHHHHHHc--CCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCH--HHHHH
Q 010335 164 QSALSKFVNKAADGGITALHMAALN--GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL--KCCQV 239 (513)
Q Consensus 164 ~~~~~~~i~~~d~~G~TpLh~Aa~~--g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~--eivk~ 239 (513)
......++..+..|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..|+. .+++.
T Consensus 174 -l~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~----------g~tpLh~Aa~~~~~~~~~v~~ 242 (471)
T PHA03095 174 -IDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDML----------GNTPLHSMATGSSCKRSLVLP 242 (471)
T ss_pred -HHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHhcCCchHHHHHH
Confidence 011122445578899999999875 7799999999999999999977 99999999999975 68999
Q ss_pred HHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC-CCCCCCCCCCCCccccchhHH
Q 010335 240 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSV 297 (513)
Q Consensus 240 LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~-~~~~~~~~~~~~~~~~~l~~~ 297 (513)
|+++|++++.+|.+|+||||+|+..|+.+++++|+.. ++.+.. +..+.+|++.+
T Consensus 243 ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~----~~~g~tpl~~A 297 (471)
T PHA03095 243 LLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAV----SSDGNTPLSLM 297 (471)
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc----CCCCCCHHHHH
Confidence 9999999999999999999999999999988777654 444443 55666775543
No 16
>PHA02989 ankyrin repeat protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=292.77 Aligned_cols=231 Identities=18% Similarity=0.171 Sum_probs=175.8
Q ss_pred CcHHHHHHHHc--CCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcC------CHHHHHHHHHCCCCCCCCCCCCChH
Q 010335 10 SGERLVSAARD--GDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG------HNEIVALLLENGADVNSRNYCGQTA 81 (513)
Q Consensus 10 ~~~~L~~Aa~~--G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g------~~eivk~LL~~Gadvn~~d~~g~Tp 81 (513)
+.++|+.++.. ++.++|+.||++|++++... .+.||||.|+.++ +.++|++|+++|+|+|.+|..|.||
T Consensus 35 g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~---~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tp 111 (494)
T PHA02989 35 GNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG---YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSP 111 (494)
T ss_pred CCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC---CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 45667655443 37899999999999987542 2389999998754 4689999999999999999999999
Q ss_pred HHHHHHc---CCHHHHHHHHhcCCCC-CcccCCCCCcHHHHHHHc--CCHHHHHHHHHccCCCCccccchhhhcccCCCC
Q 010335 82 LMQACRY---GHWEVVQTLLLFRCNV-TRADYLSGRTALHFAAVN--GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDG 155 (513)
Q Consensus 82 Lh~A~~~---g~~eiVk~LL~~ga~~-~~~~~~~G~TpLh~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 155 (513)
||.|+.. |+.++|++|+++|+++ +..+ ..|+||||+|+.. ++.+++++|++.|++....
T Consensus 112 L~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d-~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~-------------- 176 (494)
T PHA02989 112 IVCFIYNSNINNCDMLRFLLSKGINVNDVKN-SRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEK-------------- 176 (494)
T ss_pred HHHHHHhcccCcHHHHHHHHHCCCCcccccC-CCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc--------------
Confidence 9988765 6799999999999999 5655 4899999998764 6899999999988653210
Q ss_pred chhhhhhchhHHHHhcccccCCCCcHHHHHHHcC----CHHHHHHHHHcCCCcccccccCCcccc---------------
Q 010335 156 SSVKSKCDQSALSKFVNKAADGGITALHMAALNG----YFDCVQLLLDLHANVSAVTFHYGTSMD--------------- 216 (513)
Q Consensus 156 ~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g----~~eiv~~Ll~~Gadvn~~~~~~~~~~~--------------- 216 (513)
.+..|.||||+|+.++ +.+++++|+++|++++..+....+.+.
T Consensus 177 ------------------~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~ 238 (494)
T PHA02989 177 ------------------TSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFK 238 (494)
T ss_pred ------------------ccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchH
Confidence 2334555555554432 455555555555555544421111100
Q ss_pred -------------ccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335 217 -------------LIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS 276 (513)
Q Consensus 217 -------------~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~ 276 (513)
....|.||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+..|+.+++++|++.
T Consensus 239 il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~ 311 (494)
T PHA02989 239 VLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQL 311 (494)
T ss_pred HHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 012399999999999999999999999999999999999999999999999999888764
No 17
>PHA02876 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=304.95 Aligned_cols=257 Identities=21% Similarity=0.138 Sum_probs=185.5
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHH----------------------------------
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAA---------------------------------- 53 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa---------------------------------- 53 (513)
+.+.++||.|++.|+.++|+.|++.+|++... .+..|.||||+|+
T Consensus 39 ~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~-~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 117 (682)
T PHA02876 39 SIPFTAIHQALQLRQIDIVEEIIQQNPELIYI-TDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKL 117 (682)
T ss_pred cccchHHHHHHHHHhhhHHHHHHHhCcccchh-hchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHH
Confidence 34689999999999999999999999986533 3344589999666
Q ss_pred ------------------------------------HcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHH
Q 010335 54 ------------------------------------AKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97 (513)
Q Consensus 54 ------------------------------------~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~L 97 (513)
..|+.+++++|++.|+++|.+|..|.||||+|+..|+.++|++|
T Consensus 118 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~L 197 (682)
T PHA02876 118 DEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLL 197 (682)
T ss_pred HHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 56789999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcc--------------------cCCCCch
Q 010335 98 LLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG--------------------DRGDGSS 157 (513)
Q Consensus 98 L~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 157 (513)
+++|++++..+. .|.||||+|+..|+.+++++|++.+......... ...+. .......
T Consensus 198 L~~Gad~n~~~~-~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~-L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~T 275 (682)
T PHA02876 198 LSYGADVNIIAL-DDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLS-LLKAIRNEDLETSLLLYDAGFSVNSIDDCKNT 275 (682)
T ss_pred HHCCCCcCccCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHH-HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence 999999998875 8999999999999999999999765433211100 00000 0000000
Q ss_pred hhhh----hch-------hHHHHhcccccCCCCcHHHHHHHcC-CHHHHHHHHHcCCCcccccccCCccccccCCCCchh
Q 010335 158 VKSK----CDQ-------SALSKFVNKAADGGITALHMAALNG-YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 225 (513)
Q Consensus 158 ~~~~----~~~-------~~~~~~i~~~d~~G~TpLh~Aa~~g-~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpL 225 (513)
.... ... ......++..|..|.||||+|+.+| +.+++++|++.|++++..+.. |.|||
T Consensus 276 pLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~----------g~TpL 345 (682)
T PHA02876 276 PLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRL----------YITPL 345 (682)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccC----------CCcHH
Confidence 0000 000 0011124556667777777777777 477777777777777776655 77777
Q ss_pred HHHhhC-CCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC
Q 010335 226 HFAACG-GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS 277 (513)
Q Consensus 226 h~Aa~~-g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~ 277 (513)
|+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+.+
T Consensus 346 h~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~g 398 (682)
T PHA02876 346 HQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYG 398 (682)
T ss_pred HHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 777764 4567777777777777777777777777777777777766665543
No 18
>PHA02876 ankyrin repeat protein; Provisional
Probab=100.00 E-value=4.7e-32 Score=301.44 Aligned_cols=270 Identities=23% Similarity=0.220 Sum_probs=177.8
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHH------------------------
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLL------------------------ 65 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL------------------------ 65 (513)
+.+|||.|++.|+.++|++|+++|++++.....+ .||||+|+..|+.+++++|+
T Consensus 178 G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g--~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~ 255 (682)
T PHA02876 178 CITPIHYAAERGNAKMVNLLLSYGADVNIIALDD--LSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLET 255 (682)
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCC--CCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHH
Confidence 4456666666666666666666666555433333 56666666655555544433
Q ss_pred -----HCCCCCCCCCCCCChHHHHHHHcCCH-HHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC-CHHHHHHHHHccCCC
Q 010335 66 -----ENGADVNSRNYCGQTALMQACRYGHW-EVVQTLLLFRCNVTRADYLSGRTALHFAAVNG-HVRCIRLVVADFVPS 138 (513)
Q Consensus 66 -----~~Gadvn~~d~~g~TpLh~A~~~g~~-eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g-~~~iv~~Ll~~~~~~ 138 (513)
+.|++++..|..|.||||+|+..|+. +++++|++.|++++..+. .|.||||+|+..| +.+++++|+..+...
T Consensus 256 ~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~-~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi 334 (682)
T PHA02876 256 SLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNI-KGETPLYLMAKNGYDTENIRTLIMLGADV 334 (682)
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhCCCHHHHHHHHHcCCCC
Confidence 33445555566677777777776664 466777777777766664 6777777777776 466777777665443
Q ss_pred Ccccc---chhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccc
Q 010335 139 VPFEV---MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM 215 (513)
Q Consensus 139 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~ 215 (513)
..... ...+.+...+....... ........++.+|..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus 335 n~~d~~g~TpLh~A~~~~~~~~iv~--lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~----- 407 (682)
T PHA02876 335 NAADRLYITPLHQASTLDRNKDIVI--TLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK----- 407 (682)
T ss_pred CCcccCCCcHHHHHHHhCCcHHHHH--HHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCC-----
Confidence 22111 11111111000000000 011122346788899999999999999999999999999999998876
Q ss_pred cccCCCCchhHHHhhCCC-HHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC-ccchhhhcCCCC-CCCCCCCCCCCcccc
Q 010335 216 DLIGAGSTPLHFAACGGN-LKCCQVLLSRGASRMSLNCNGWLPLDVARMWG-RHWLEPLLAPSS-DAVMPRFHPSNYLSL 292 (513)
Q Consensus 216 ~~~~~G~TpLh~Aa~~g~-~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g-~~~iv~lL~~~~-~~~~~~~~~~~~~~~ 292 (513)
|.||||+|+..++ ..++++|+++|++++.+|.+|+||||+|+..+ +.+++++|.+.+ +.+.. +..+.+
T Consensus 408 -----g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~----d~~g~t 478 (682)
T PHA02876 408 -----IGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAI----NIQNQY 478 (682)
T ss_pred -----CCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCC----CCCCCC
Confidence 8999999997666 56799999999999999999999999999877 578888776654 33333 667778
Q ss_pred chhHHH
Q 010335 293 PLLSVL 298 (513)
Q Consensus 293 ~l~~~l 298 (513)
|+..++
T Consensus 479 pl~~a~ 484 (682)
T PHA02876 479 PLLIAL 484 (682)
T ss_pred HHHHHH
Confidence 876554
No 19
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-33 Score=241.74 Aligned_cols=194 Identities=32% Similarity=0.380 Sum_probs=173.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCC-CCChHHHHHHHcCCHHHHHHHH-hcCCCCCcccCCCCCcHHHHHHHc
Q 010335 46 NSPLHFAAAKGHNEIVALLLENGA-DVNSRNY-CGQTALMQACRYGHWEVVQTLL-LFRCNVTRADYLSGRTALHFAAVN 122 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~Ga-dvn~~d~-~g~TpLh~A~~~g~~eiVk~LL-~~ga~~~~~~~~~G~TpLh~A~~~ 122 (513)
.++.+.++......-|+.|++... .++.++. +|+||||+||..|+.++|.+|+ +.+..++..|+ .||||||.|+..
T Consensus 4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd-aGWtPlhia~s~ 82 (226)
T KOG4412|consen 4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD-AGWTPLHIAASN 82 (226)
T ss_pred cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccc-cCCchhhhhhhc
Confidence 578888888888888888888766 6777776 9999999999999999999999 56788888876 999999999999
Q ss_pred CCHHHHHHHHHc-cCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 010335 123 GHVRCIRLVVAD-FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201 (513)
Q Consensus 123 g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G 201 (513)
|+.++|+.|+.+ +++ +|..+..|.|+||+|+..|..+|+++|+++|
T Consensus 83 g~~evVk~Ll~r~~ad---------------------------------vna~tn~G~T~LHyAagK~r~eIaqlLle~g 129 (226)
T KOG4412|consen 83 GNDEVVKELLNRSGAD---------------------------------VNATTNGGQTCLHYAAGKGRLEIAQLLLEKG 129 (226)
T ss_pred CcHHHHHHHhcCCCCC---------------------------------cceecCCCcceehhhhcCChhhHHHHHHhcC
Confidence 999999999976 322 7888999999999999999999999999999
Q ss_pred CCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCC-CCCCC
Q 010335 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAV 280 (513)
Q Consensus 202 advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~-~~~~~ 280 (513)
+.++.+|.. |.||||-|+.-|+++++++|+..|+.+|.+|..|+||||.|.-.|+.++..+|.. +++.+
T Consensus 130 a~i~~kD~~----------~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~ 199 (226)
T KOG4412|consen 130 ALIRIKDKQ----------GQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTD 199 (226)
T ss_pred CCCcccccc----------cCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhcccee
Confidence 999999988 9999999999999999999999999999999999999999988889887665554 55555
Q ss_pred CCC
Q 010335 281 MPR 283 (513)
Q Consensus 281 ~~~ 283 (513)
..+
T Consensus 200 ~ed 202 (226)
T KOG4412|consen 200 RED 202 (226)
T ss_pred ecc
Confidence 543
No 20
>PHA02798 ankyrin-like protein; Provisional
Probab=100.00 E-value=6e-32 Score=289.15 Aligned_cols=225 Identities=20% Similarity=0.160 Sum_probs=178.6
Q ss_pred HHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHc-----CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC-
Q 010335 16 SAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAK-----GHNEIVALLLENGADVNSRNYCGQTALMQACRYG- 89 (513)
Q Consensus 16 ~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~-----g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g- 89 (513)
.+...++.++|++|+++|++++.....+ .||||+|+.+ ++.+++++|+++|+|+|.+|..|.||||+|+.++
T Consensus 44 l~~~~~~~~iv~~Ll~~Gadvn~~d~~g--~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~ 121 (489)
T PHA02798 44 LQRDSPSTDIVKLFINLGANVNGLDNEY--STPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGY 121 (489)
T ss_pred HhCCCCCHHHHHHHHHCCCCCCCCCCCC--CChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCC
Confidence 3444568999999999999998665444 8999999864 6799999999999999999999999999999986
Q ss_pred --CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC---HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhch
Q 010335 90 --HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH---VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164 (513)
Q Consensus 90 --~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~---~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (513)
+.+++++|+++|++++..+. .|.||||+|+..++ .+++++|++.|.+.
T Consensus 122 ~~~~~iv~~Ll~~Gadvn~~d~-~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi-------------------------- 174 (489)
T PHA02798 122 INNLEILLFMIENGADTTLLDK-DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI-------------------------- 174 (489)
T ss_pred cChHHHHHHHHHcCCCccccCC-CCCcHHHHHHHcCCcchHHHHHHHHHhCCCc--------------------------
Confidence 78999999999999998886 99999999999998 99999999887652
Q ss_pred hHHHHhcccc-cCCCCcHHHHHHHc----CCHHHHHHHHHcCCCcccccccCCcccc-----------------------
Q 010335 165 SALSKFVNKA-ADGGITALHMAALN----GYFDCVQLLLDLHANVSAVTFHYGTSMD----------------------- 216 (513)
Q Consensus 165 ~~~~~~i~~~-d~~G~TpLh~Aa~~----g~~eiv~~Ll~~Gadvn~~~~~~~~~~~----------------------- 216 (513)
+.. +..|.||||.++.+ ++.+++++|+++|++++..+......+.
T Consensus 175 -------n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~ 247 (489)
T PHA02798 175 -------NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS 247 (489)
T ss_pred -------ccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh
Confidence 222 12345555555432 2455555555555555443322111100
Q ss_pred ------ccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335 217 ------LIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS 276 (513)
Q Consensus 217 ------~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~ 276 (513)
....|.||||+|+..|+.+++++|+++|||++.+|..|+|||++|+..++..+++.|++.
T Consensus 248 ~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~ 313 (489)
T PHA02798 248 YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNK 313 (489)
T ss_pred cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHcc
Confidence 012399999999999999999999999999999999999999999999999888777654
No 21
>PHA02878 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.3e-31 Score=285.81 Aligned_cols=236 Identities=23% Similarity=0.242 Sum_probs=186.8
Q ss_pred HHHHHHHcCCHHHHHHHHhcC---CCC-ccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335 13 RLVSAARDGDFVEAKMLLDCN---PCL-AKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY 88 (513)
Q Consensus 13 ~L~~Aa~~G~~e~vk~LL~~~---~~~-~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~ 88 (513)
.|+.+++..+.+.+...++.- ... ...... +.||||+||..|+.++|++|+++|+++|.+|..|.||||+|+..
T Consensus 3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~--~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~ 80 (477)
T PHA02878 3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLI--PFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKE 80 (477)
T ss_pred hHHHHHHhccHHHHHHHHHHHhhhhhhcCccccc--CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence 478888888876666666541 111 111222 37999999999999999999999999999999999999999987
Q ss_pred CCHH----------------------------------------------------------------HHHHHHhcCCCC
Q 010335 89 GHWE----------------------------------------------------------------VVQTLLLFRCNV 104 (513)
Q Consensus 89 g~~e----------------------------------------------------------------iVk~LL~~ga~~ 104 (513)
|+.+ ++++|+++|+++
T Consensus 81 g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi 160 (477)
T PHA02878 81 PNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI 160 (477)
T ss_pred ccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC
Confidence 6543 666677777787
Q ss_pred CcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHH
Q 010335 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHM 184 (513)
Q Consensus 105 ~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~ 184 (513)
+..+...|.||||+|+.+|+.+++++|++.++. ++..|..|.||||+
T Consensus 161 n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad---------------------------------~n~~d~~g~tpLh~ 207 (477)
T PHA02878 161 NMKDRHKGNTALHYATENKDQRLTELLLSYGAN---------------------------------VNIPDKTNNSPLHH 207 (477)
T ss_pred CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC---------------------------------CCCcCCCCCCHHHH
Confidence 777753388899999988888988888876653 66778889999999
Q ss_pred HHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhC-CCHHHHHHHHHCCCCCCCcCC-CCCcHHHHHH
Q 010335 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG-GNLKCCQVLLSRGASRMSLNC-NGWLPLDVAR 262 (513)
Q Consensus 185 Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~-g~~eivk~LL~~Gad~~~~d~-~G~TpL~~A~ 262 (513)
|+..|+.+++++|++.|++++..+.. |.||||+|+.. ++.+++++|+++|++++.++. .|+||||+|
T Consensus 208 A~~~~~~~iv~~Ll~~ga~in~~d~~----------g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A- 276 (477)
T PHA02878 208 AVKHYNKPIVHILLENGASTDARDKC----------GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS- 276 (477)
T ss_pred HHHhCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH-
Confidence 99999999999999999999988876 99999999975 689999999999999998875 799999999
Q ss_pred HcCccchhhhcCCC-CCCCCCCCCCCCccccchhHHHH
Q 010335 263 MWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSVLN 299 (513)
Q Consensus 263 ~~g~~~iv~lL~~~-~~~~~~~~~~~~~~~~~l~~~l~ 299 (513)
.++.+++++|.+. ++.+.. +..+.+|++.++.
T Consensus 277 -~~~~~~v~~Ll~~gadin~~----d~~g~TpL~~A~~ 309 (477)
T PHA02878 277 -IKSERKLKLLLEYGADINSL----NSYKLTPLSSAVK 309 (477)
T ss_pred -ccCHHHHHHHHHCCCCCCCc----CCCCCCHHHHHHH
Confidence 4566677766554 444443 5667788766554
No 22
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=100.00 E-value=4.2e-32 Score=283.47 Aligned_cols=283 Identities=25% Similarity=0.275 Sum_probs=229.0
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
+.+..+||.|+....++.+++|++.|++....+... .+|||+|+..|+.+.++.|+++|+|+|..|..|.||||.|+.
T Consensus 86 ~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~--~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~ 163 (929)
T KOG0510|consen 86 SADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNK--NAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAAR 163 (929)
T ss_pred cccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhc--cCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHh
Confidence 456678999999999999999999999988766655 899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHc-cC-------CCCccccchhhhcccCCCCchhh
Q 010335 88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVAD-FV-------PSVPFEVMNTQIEGDRGDGSSVK 159 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~ 159 (513)
+++.|..+.|++.|+++...+. +|.+|+|.|+++|..++.++.+.+ +. ...+......+.+...+.....+
T Consensus 164 ~~~~E~~k~Li~~~a~~~K~~~-~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk 242 (929)
T KOG0510|consen 164 KNKVEAKKELINKGADPCKSDI-DGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLK 242 (929)
T ss_pred cChHHHHHHHHhcCCCCCcccC-cCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHH
Confidence 9999988999999999998875 899999999999999999988861 11 11112222223333333222221
Q ss_pred hhh------------chhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHH
Q 010335 160 SKC------------DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 227 (513)
Q Consensus 160 ~~~------------~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~ 227 (513)
... .....+..++..|.+|.||||+|++.|+.+.|+.|+..|++++.++.+ +.||||.
T Consensus 243 ~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d----------~~spLH~ 312 (929)
T KOG0510|consen 243 MCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKD----------EESPLHF 312 (929)
T ss_pred HHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCC----------CCCchHH
Confidence 111 223455678999999999999999999999999999999999999977 9999999
Q ss_pred HhhCCCHHHHHHHHH-CC-CCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCCCCCCCCCCCccccchhHHHHHHHHhC
Q 010335 228 AACGGNLKCCQVLLS-RG-ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECG 305 (513)
Q Consensus 228 Aa~~g~~eivk~LL~-~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~~~~~~~~~~~~~~~l~~~l~~a~e~g 305 (513)
||.+|+.+.|+-||+ .| ...|..|..|.||||+|++.||..++++|++.++........+.++.++ ++.|..+|
T Consensus 313 AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~Ta----LH~Aa~~g 388 (929)
T KOG0510|consen 313 AAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTA----LHLAAKYG 388 (929)
T ss_pred HHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchh----hhHHHHhc
Confidence 999999999999998 43 4578889999999999999999999999998888766422336666666 44555555
Q ss_pred CC
Q 010335 306 LL 307 (513)
Q Consensus 306 ~~ 307 (513)
..
T Consensus 389 ~~ 390 (929)
T KOG0510|consen 389 NT 390 (929)
T ss_pred cH
Confidence 43
No 23
>PHA02875 ankyrin repeat protein; Provisional
Probab=100.00 E-value=2.2e-31 Score=279.15 Aligned_cols=213 Identities=19% Similarity=0.183 Sum_probs=190.4
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCChHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN-SRNYCGQTALMQAC 86 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn-~~d~~g~TpLh~A~ 86 (513)
..+.++||.|++.|+.+++++|++.|.+.+.... .+.||||+|+..|+.++|++|++.|.+++ ..+..|.||||+|+
T Consensus 33 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~--~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~ 110 (413)
T PHA02875 33 YDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYP--DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLAT 110 (413)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCC--CcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHH
Confidence 3578899999999999999999999987665433 34899999999999999999999998764 45678999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335 87 RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166 (513)
Q Consensus 87 ~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (513)
..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 111 ~~~~~~iv~~Ll~~gad~~~~~~-~g~tpLh~A~~~~~~~~v~~Ll~~g~~----------------------------- 160 (413)
T PHA02875 111 ILKKLDIMKLLIARGADPDIPNT-DKFSPLHLAVMMGDIKGIELLIDHKAC----------------------------- 160 (413)
T ss_pred HhCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCC-----------------------------
Confidence 99999999999999999998885 899999999999999999999987653
Q ss_pred HHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246 (513)
Q Consensus 167 ~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad 246 (513)
++..|..|.||||+|+..|+.+++++|+++|++++..+.. .+.||||+|+..|+.+++++|+++|+|
T Consensus 161 ----~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~---------~~~t~l~~A~~~~~~~iv~~Ll~~gad 227 (413)
T PHA02875 161 ----LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKN---------GCVAALCYAIENNKIDIVRLFIKRGAD 227 (413)
T ss_pred ----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC---------CCchHHHHHHHcCCHHHHHHHHHCCcC
Confidence 5677889999999999999999999999999999998866 146899999999999999999999999
Q ss_pred CCCc---CCCCCcHHHHHHHcC
Q 010335 247 RMSL---NCNGWLPLDVARMWG 265 (513)
Q Consensus 247 ~~~~---d~~G~TpL~~A~~~g 265 (513)
++.. +.++.|||+++....
T Consensus 228 ~n~~~~~~~~~~t~l~~~~~~~ 249 (413)
T PHA02875 228 CNIMFMIEGEECTILDMICNMC 249 (413)
T ss_pred cchHhhcCCCchHHHHHHHhhc
Confidence 9865 678899999886543
No 24
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.98 E-value=1.5e-31 Score=290.80 Aligned_cols=245 Identities=20% Similarity=0.135 Sum_probs=190.2
Q ss_pred HHcCCHHHHHHHHhcC-CCCccccCCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC--HH
Q 010335 18 ARDGDFVEAKMLLDCN-PCLAKYSTFGGLNSPLHFAAA--KGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH--WE 92 (513)
Q Consensus 18 a~~G~~e~vk~LL~~~-~~~~~~~~~~~g~TpLh~Aa~--~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~--~e 92 (513)
.+.++++++++|++.| ++++... +..|.||||+|+. .++.++|++|+++|+++|.+|..|.||||+|+..|+ .+
T Consensus 150 ~~~v~leiVk~LLe~G~ADIN~~~-d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~e 228 (764)
T PHA02716 150 TRGIDLDLIKYMVDVGIVNLNYVC-KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCAS 228 (764)
T ss_pred ccCCCHHHHHHHHHCCCCCccccc-CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHH
Confidence 4579999999999999 8887541 2334999999875 467999999999999999999999999999999995 59
Q ss_pred HHHHHHhcCCCCCcccCCCCCcHHHHHH---HcCCHHHHHHHHHccCCCCccccc---hh-hhcccCCCCchhhhhhchh
Q 010335 93 VVQTLLLFRCNVTRADYLSGRTALHFAA---VNGHVRCIRLVVADFVPSVPFEVM---NT-QIEGDRGDGSSVKSKCDQS 165 (513)
Q Consensus 93 iVk~LL~~ga~~~~~~~~~G~TpLh~A~---~~g~~~iv~~Ll~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~ 165 (513)
+|++|+++|++++..+. .|+||||+|+ .+++.+++++|++........... .. ..+...+....+....
T Consensus 229 IVklLLe~GADVN~kD~-~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLL--- 304 (764)
T PHA02716 229 VIKKIIELGGDMDMKCV-NGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFL--- 304 (764)
T ss_pred HHHHHHHcCCCCCCCCC-CCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHH---
Confidence 99999999999999886 8999999986 467999999998754321110000 00 0001111111111111
Q ss_pred HHHHhcccccCCCCcHHHHHHH--cCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhh-------------
Q 010335 166 ALSKFVNKAADGGITALHMAAL--NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC------------- 230 (513)
Q Consensus 166 ~~~~~i~~~d~~G~TpLh~Aa~--~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~------------- 230 (513)
.....++.+|..|+||||+|+. .++.+++++|+++|++++.+|.. |.||||+|+.
T Consensus 305 e~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~----------G~TPLH~A~~~lav~~~ld~~~~ 374 (764)
T PHA02716 305 QPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNI----------GNTVLHTYLSMLSVVNILDPETD 374 (764)
T ss_pred hCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCC----------CCCHHHHHHHhhhhhcccccccc
Confidence 1123467889999999999865 46899999999999999999976 9999999875
Q ss_pred -CCCHHHHHHHHHCCCCCCCcCCCCCcHHHH----HHHcCccchhhhcCCCC
Q 010335 231 -GGNLKCCQVLLSRGASRMSLNCNGWLPLDV----ARMWGRHWLEPLLAPSS 277 (513)
Q Consensus 231 -~g~~eivk~LL~~Gad~~~~d~~G~TpL~~----A~~~g~~~iv~lL~~~~ 277 (513)
.++.++|++|+++|++++.+|..|+||||. |...++.+++++|....
T Consensus 375 ~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~ 426 (764)
T PHA02716 375 NDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDK 426 (764)
T ss_pred ccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCc
Confidence 378999999999999999999999999994 23356788998887754
No 25
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.97 E-value=2.5e-30 Score=277.01 Aligned_cols=227 Identities=21% Similarity=0.214 Sum_probs=185.9
Q ss_pred HcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC------C
Q 010335 19 RDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAK--GHNEIVALLLENGADVNSRNYCGQTALMQACRYG------H 90 (513)
Q Consensus 19 ~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~--g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g------~ 90 (513)
...+.++|++||++|++++.. .. |.||||+++.. ++.++|++|+++|+|+|.++ .+.||||.|+.++ +
T Consensus 12 ~~~~~~~v~~LL~~GadvN~~-~~--g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~ 87 (494)
T PHA02989 12 DTVDKNALEFLLRTGFDVNEE-YR--GNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKI 87 (494)
T ss_pred CcCcHHHHHHHHHcCCCcccc-cC--CCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhH
Confidence 358999999999999998765 32 48998776654 37899999999999999987 5799999998765 4
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHc---CCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335 91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVN---GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167 (513)
Q Consensus 91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (513)
.++|++|+++|++++..+. .|.||||.|+.. ++.+++++|+++|++
T Consensus 88 ~~iv~~Ll~~Gadin~~d~-~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gad------------------------------ 136 (494)
T PHA02989 88 KKIVKLLLKFGADINLKTF-NGVSPIVCFIYNSNINNCDMLRFLLSKGIN------------------------------ 136 (494)
T ss_pred HHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHhcccCcHHHHHHHHHCCCC------------------------------
Confidence 7899999999999999886 899999998765 689999999998765
Q ss_pred HHhc-ccccCCCCcHHHHHHHc--CCHHHHHHHHHcCCCccc-ccccCCccccccCCCCchhHHHhhCC----CHHHHHH
Q 010335 168 SKFV-NKAADGGITALHMAALN--GYFDCVQLLLDLHANVSA-VTFHYGTSMDLIGAGSTPLHFAACGG----NLKCCQV 239 (513)
Q Consensus 168 ~~~i-~~~d~~G~TpLh~Aa~~--g~~eiv~~Ll~~Gadvn~-~~~~~~~~~~~~~~G~TpLh~Aa~~g----~~eivk~ 239 (513)
+ +..|..|+||||+|+.. ++.++|++|+++|++++. .+.. |.||||+|+..+ +.+++++
T Consensus 137 ---in~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~----------g~tpL~~a~~~~~~~~~~~iv~~ 203 (494)
T PHA02989 137 ---VNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLY----------GLTPMNIYLRNDIDVISIKVIKY 203 (494)
T ss_pred ---cccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccccc----------CCChHHHHHhcccccccHHHHHH
Confidence 5 56788999999998764 689999999999999998 4444 899999987654 8899999
Q ss_pred HHHCCCCCCC--------------------------------------cCCCCCcHHHHHHHcCccchhhhcCCC-CCCC
Q 010335 240 LLSRGASRMS--------------------------------------LNCNGWLPLDVARMWGRHWLEPLLAPS-SDAV 280 (513)
Q Consensus 240 LL~~Gad~~~--------------------------------------~d~~G~TpL~~A~~~g~~~iv~lL~~~-~~~~ 280 (513)
|+++|++++. +|..|+||||+|+..|+.+++++|++. ++++
T Consensus 204 Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin 283 (494)
T PHA02989 204 LIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY 283 (494)
T ss_pred HHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcc
Confidence 9998887654 455689999999999998888877664 4434
Q ss_pred CCCCCCCCccccchhHH
Q 010335 281 MPRFHPSNYLSLPLLSV 297 (513)
Q Consensus 281 ~~~~~~~~~~~~~l~~~ 297 (513)
.. +..+.+|+..+
T Consensus 284 ~~----d~~G~TpL~~A 296 (494)
T PHA02989 284 NV----SKDGDTVLTYA 296 (494)
T ss_pred cc----CCCCCCHHHHH
Confidence 33 55666775443
No 26
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.97 E-value=7.3e-31 Score=259.26 Aligned_cols=217 Identities=30% Similarity=0.369 Sum_probs=191.3
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCC---ccccCCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCC--------CCCCChH
Q 010335 14 LVSAARDGDFVEAKMLLDCNPCL---AKYSTFGGLNSPLHFAAAKGHNEIVALLLE-NGADVNSR--------NYCGQTA 81 (513)
Q Consensus 14 L~~Aa~~G~~e~vk~LL~~~~~~---~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~-~Gadvn~~--------d~~g~Tp 81 (513)
.+.|++.|.+..++.|+-+..+. .......+|.|||.+||++||.++|++|++ .++++... ...|-+|
T Consensus 8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp 87 (615)
T KOG0508|consen 8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP 87 (615)
T ss_pred HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence 45899999999999998764422 122333445799999999999999999999 56766543 3468899
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhh
Q 010335 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161 (513)
Q Consensus 82 Lh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (513)
|..|+-.||+++||.|+.+|+++|.... ...|||..|+..|+.+++++|++++++
T Consensus 88 LWaAsaAGHl~vVk~L~~~ga~VN~tT~-TNStPLraACfDG~leivKyLvE~gad------------------------ 142 (615)
T KOG0508|consen 88 LWAASAAGHLEVVKLLLRRGASVNDTTR-TNSTPLRAACFDGHLEIVKYLVEHGAD------------------------ 142 (615)
T ss_pred hhHHhccCcHHHHHHHHHhcCccccccc-cCCccHHHHHhcchhHHHHHHHHcCCC------------------------
Confidence 9999999999999999999999998875 677999999999999999999998775
Q ss_pred hchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHH
Q 010335 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 241 (513)
Q Consensus 162 ~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL 241 (513)
++..+..|.|-||+|+.+||.+|+++|++.|+|+|.++.. |+|+||.+++.|+.+++|+|+
T Consensus 143 ---------~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~k----------GNTALH~caEsG~vdivq~Ll 203 (615)
T KOG0508|consen 143 ---------PEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYK----------GNTALHDCAESGSVDIVQLLL 203 (615)
T ss_pred ---------CcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhccc----------CchHHHhhhhcccHHHHHHHH
Confidence 6778899999999999999999999999999999999987 999999999999999999999
Q ss_pred HCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCC
Q 010335 242 SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP 275 (513)
Q Consensus 242 ~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~ 275 (513)
.+|+.+. +|..|.|||..|+..|+..++++|..
T Consensus 204 ~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~ 236 (615)
T KOG0508|consen 204 KHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQ 236 (615)
T ss_pred hCCceee-ecCCCCchHHHHhhhcchHHHHHHhc
Confidence 9999875 46679999999999999999988874
No 27
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.97 E-value=5.8e-30 Score=263.23 Aligned_cols=206 Identities=28% Similarity=0.279 Sum_probs=187.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 46 NSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~-Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
..-++.|++.|+++.|+.|++. |.+++..|.+|.|+||+|+.+++++++++|+++|+++|.....-+.||||||+++|+
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~ 124 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH 124 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence 4678999999999999999998 999999999999999999999999999999999999999987789999999999999
Q ss_pred HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335 125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 204 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv 204 (513)
+.++.+|+++|++ ++.+|..|.|+||+|+..|+.-+|-+||.+|+|+
T Consensus 125 ~~vv~lLlqhGAd---------------------------------pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~ 171 (600)
T KOG0509|consen 125 ISVVDLLLQHGAD---------------------------------PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI 171 (600)
T ss_pred HHHHHHHHHcCCC---------------------------------CceecCCCCcHHHHHHHhCchHHHHHHHHhcccC
Confidence 9999999999886 7788999999999999999999999999999999
Q ss_pred ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcC-CCCCcHHHHHHHcCccchhhhcCCCCCCCCCC
Q 010335 205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN-CNGWLPLDVARMWGRHWLEPLLAPSSDAVMPR 283 (513)
Q Consensus 205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d-~~G~TpL~~A~~~g~~~iv~lL~~~~~~~~~~ 283 (513)
+.+|.+ |+||||+|+..|....+..|+..|++++.+| ..|.||||+|+..|+..++.+|.+++...-..
T Consensus 172 d~~D~~----------grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~ 241 (600)
T KOG0509|consen 172 DLRDNN----------GRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKT 241 (600)
T ss_pred CCcCCC----------CCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCccccc
Confidence 999987 9999999999999999999999999999988 99999999999999999888776665443222
Q ss_pred CCCCCccccchhHH
Q 010335 284 FHPSNYLSLPLLSV 297 (513)
Q Consensus 284 ~~~~~~~~~~l~~~ 297 (513)
+..+.+|+.-+
T Consensus 242 ---~~~g~tp~~LA 252 (600)
T KOG0509|consen 242 ---NTNGKTPFDLA 252 (600)
T ss_pred ---ccCCCCHHHHH
Confidence 33366665543
No 28
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.97 E-value=2.3e-29 Score=238.80 Aligned_cols=175 Identities=18% Similarity=0.178 Sum_probs=156.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHc
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG--HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN 122 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g--~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~ 122 (513)
+.||||+|+..|++++|+.|++. ++..|..|.||||+|+.++ +.+++++|+++|++++..+...|.||||+|+..
T Consensus 21 ~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~ 97 (209)
T PHA02859 21 YCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSF 97 (209)
T ss_pred cCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHh
Confidence 47999999999999999999975 5678889999999999865 899999999999999988655799999998763
Q ss_pred ---CCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHH--cCCHHHHHHH
Q 010335 123 ---GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL--NGYFDCVQLL 197 (513)
Q Consensus 123 ---g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~--~g~~eiv~~L 197 (513)
++.+++++|++++.+ ++.+|..|.||||+|+. .++.+++++|
T Consensus 98 ~~~~~~eiv~~Ll~~gad---------------------------------in~~d~~G~TpLh~a~~~~~~~~~iv~~L 144 (209)
T PHA02859 98 NKNVEPEILKILIDSGSS---------------------------------ITEEDEDGKNLLHMYMCNFNVRINVIKLL 144 (209)
T ss_pred CccccHHHHHHHHHCCCC---------------------------------CCCcCCCCCCHHHHHHHhccCCHHHHHHH
Confidence 479999999988765 77888999999999876 4689999999
Q ss_pred HHcCCCcccccccCCccccccCCCCchhHH-HhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Q 010335 198 LDLHANVSAVTFHYGTSMDLIGAGSTPLHF-AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265 (513)
Q Consensus 198 l~~Gadvn~~~~~~~~~~~~~~~G~TpLh~-Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g 265 (513)
+++|++++.++.. |.||||. |+..++.+++++|+++|++++.+|..|+|||++|+..+
T Consensus 145 i~~gadin~~d~~----------g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 145 IDSGVSFLNKDFD----------NNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred HHcCCCcccccCC----------CCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence 9999999999977 9999995 66788999999999999999999999999999998765
No 29
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=264.85 Aligned_cols=259 Identities=24% Similarity=0.317 Sum_probs=200.0
Q ss_pred cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH 90 (513)
Q Consensus 11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~ 90 (513)
-.++|.|+..|+++.++.|++++.+++..+.. +.||||.|+..++.|..+.|++.|+|+-..|.+|.+|+|.|++.|.
T Consensus 122 ~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~--~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s 199 (929)
T KOG0510|consen 122 NAPLHLAADSGNYSCLKLLLDYGADVNLEDEN--GFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGS 199 (929)
T ss_pred cCchhhccccchHHHHHHHHHhcCCccccccC--CCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcc
Confidence 45789999999999999999999777654443 4899999999999998889999999998888889999999999999
Q ss_pred HHHHHHHHh-----cCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccc------------------cchhh
Q 010335 91 WEVVQTLLL-----FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE------------------VMNTQ 147 (513)
Q Consensus 91 ~eiVk~LL~-----~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~------------------~~~~~ 147 (513)
.|..+..+. .+..++..++ .|.||||.|+..|+.++++.+++.+....... ....+
T Consensus 200 ~e~mEi~l~~~g~~r~~~in~~~n-~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH 278 (929)
T KOG0510|consen 200 KECMEIFLPEHGYERQTHINFDNN-EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLH 278 (929)
T ss_pred hhhhhhhhccccchhhcccccccC-CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHH
Confidence 888888887 5666776665 78888999988888888888887766544332 11112
Q ss_pred hcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHH-cC-CCcccccccCCccccccCCCCchh
Q 010335 148 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD-LH-ANVSAVTFHYGTSMDLIGAGSTPL 225 (513)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~-~G-advn~~~~~~~~~~~~~~~G~TpL 225 (513)
.+...+....+. ........++.++.++.||||.||.+|+.+.|+.||+ .| ...|..|.. |.|||
T Consensus 279 ~a~r~G~~~svd---~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~----------g~tpL 345 (929)
T KOG0510|consen 279 YAARQGGPESVD---NLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLH----------GMTPL 345 (929)
T ss_pred HHHHcCChhHHH---HHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcccccccccc----------CCCch
Confidence 222222222111 1122334478888999999999999999999999998 33 345666655 99999
Q ss_pred HHHhhCCCHHHHHHHHHCCCCCC---CcCCCCCcHHHHHHHcCccchhhhcCC-CCCCCCCCCC
Q 010335 226 HFAACGGNLKCCQVLLSRGASRM---SLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVMPRFH 285 (513)
Q Consensus 226 h~Aa~~g~~eivk~LL~~Gad~~---~~d~~G~TpL~~A~~~g~~~iv~lL~~-~~~~~~~~~~ 285 (513)
|+|++.||..++++||++||+.. ..|.+|.||||+|+..|+..++++|.. ++++......
T Consensus 346 Hlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~ 409 (929)
T KOG0510|consen 346 HLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKK 409 (929)
T ss_pred hhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecccc
Confidence 99999999999999999999987 459999999999999999887765554 5555454433
No 30
>PHA02917 ankyrin-like protein; Provisional
Probab=99.96 E-value=7.4e-29 Score=270.89 Aligned_cols=220 Identities=17% Similarity=0.077 Sum_probs=178.8
Q ss_pred HHHHHHHHhcCCCCccccCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHH----HHH
Q 010335 23 FVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWE----VVQ 95 (513)
Q Consensus 23 ~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~---g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~e----iVk 95 (513)
++.||.||.++...+.. +..|+||||+|+.. |+.++|++||+.|++++.+|..|.||||+|+..|+.+ +++
T Consensus 12 ~~~~~~l~~~~~~~~~~--d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~ 89 (661)
T PHA02917 12 LDELKQMLRDRDPNDTR--NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAM 89 (661)
T ss_pred HHHHHHHHhccCccccc--CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHH
Confidence 67889999877666433 33449999998665 8899999999999999999999999999999999955 567
Q ss_pred HHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhccccc
Q 010335 96 TLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA 175 (513)
Q Consensus 96 ~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 175 (513)
.|++.+...+.. ...+++++|+.+++.+++++|+++|++ ++.+|
T Consensus 90 ~Ll~~~~~~n~~---~~~~~~~~a~~~~~~e~vk~Ll~~Gad---------------------------------in~~d 133 (661)
T PHA02917 90 ALLEATGYSNIN---DFNIFSYMKSKNVDVDLIKVLVEHGFD---------------------------------LSVKC 133 (661)
T ss_pred HHHhccCCCCCC---CcchHHHHHhhcCCHHHHHHHHHcCCC---------------------------------CCccC
Confidence 888765433332 234778889999999999999998875 78889
Q ss_pred CCCCcHHHHHH--HcCCHHHHHHHHHcCCCcccccccC--Ccccc--ccCCCCchhHHHhh-----------CCCHHHHH
Q 010335 176 DGGITALHMAA--LNGYFDCVQLLLDLHANVSAVTFHY--GTSMD--LIGAGSTPLHFAAC-----------GGNLKCCQ 238 (513)
Q Consensus 176 ~~G~TpLh~Aa--~~g~~eiv~~Ll~~Gadvn~~~~~~--~~~~~--~~~~G~TpLh~Aa~-----------~g~~eivk 238 (513)
..|.||||.|+ .+|+.++|++|+++|++++..+... |...+ ....+.||||+|+. +++.++|+
T Consensus 134 ~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~ 213 (661)
T PHA02917 134 ENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVK 213 (661)
T ss_pred CCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHH
Confidence 99999999653 5789999999999999998765321 11000 11235799999986 56899999
Q ss_pred HHHHCCCCCCCcCCCCCcHHHHHHHcCcc--chhhhcCCCCCCC
Q 010335 239 VLLSRGASRMSLNCNGWLPLDVARMWGRH--WLEPLLAPSSDAV 280 (513)
Q Consensus 239 ~LL~~Gad~~~~d~~G~TpL~~A~~~g~~--~iv~lL~~~~~~~ 280 (513)
+|+++|||++.+|.+|+||||+|+..|+. +++++|.++++..
T Consensus 214 ~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~~ 257 (661)
T PHA02917 214 CLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDNT 257 (661)
T ss_pred HHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCccc
Confidence 99999999999999999999999999985 6999998877654
No 31
>PHA02917 ankyrin-like protein; Provisional
Probab=99.96 E-value=9.1e-29 Score=270.18 Aligned_cols=279 Identities=18% Similarity=0.123 Sum_probs=193.6
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCCCCCCC---CC--------
Q 010335 12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAA--AKGHNEIVALLLENGADVNSRNY---CG-------- 78 (513)
Q Consensus 12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa--~~g~~eivk~LL~~Gadvn~~d~---~g-------- 78 (513)
.+++.|+..|++++|++|+++|++++.....+ .||||+|+ ..|+.++|++|+++|+++|..|. .|
T Consensus 105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g--~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~ 182 (661)
T PHA02917 105 IFSYMKSKNVDVDLIKVLVEHGFDLSVKCENH--RSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQP 182 (661)
T ss_pred hHHHHHhhcCCHHHHHHHHHcCCCCCccCCCC--ccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccc
Confidence 56778999999999999999999998665554 99999654 47899999999999999987653 34
Q ss_pred ---ChHHHHHHH-----------cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCH--HHHHHHHHccCCCCc--
Q 010335 79 ---QTALMQACR-----------YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV--RCIRLVVADFVPSVP-- 140 (513)
Q Consensus 79 ---~TpLh~A~~-----------~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~--~iv~~Ll~~~~~~~~-- 140 (513)
.||||+|+. +++.++|++|+++|++++..+. +|.||||+|+.+|+. ++|++|++ +.....
T Consensus 183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~-~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~ 260 (661)
T PHA02917 183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDK-NYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYS 260 (661)
T ss_pred cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCC-CCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccc
Confidence 599999986 5689999999999999999886 999999999999985 79999985 432210
Q ss_pred -----cccchhhhcccCCCCchhhhhhchhHHHHhcccc-------------------------cCCCCcHHHHHH---H
Q 010335 141 -----FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKA-------------------------ADGGITALHMAA---L 187 (513)
Q Consensus 141 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------------------d~~G~TpLh~Aa---~ 187 (513)
......................+...+..++... ...+.++||.+. .
T Consensus 261 ~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 340 (661)
T PHA02917 261 YIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMT 340 (661)
T ss_pred cccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHH
Confidence 1010000000000000000000001111111111 112344544433 4
Q ss_pred cCC--HHHHHHHHHcCCCcccccccCCccc--------------------cccCCCCchhHHHhhCC-------------
Q 010335 188 NGY--FDCVQLLLDLHANVSAVTFHYGTSM--------------------DLIGAGSTPLHFAACGG------------- 232 (513)
Q Consensus 188 ~g~--~eiv~~Ll~~Gadvn~~~~~~~~~~--------------------~~~~~G~TpLh~Aa~~g------------- 232 (513)
.|. .++|++|+++||+++..+.+..+.. .....|.||||.|++.+
T Consensus 341 ~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~ 420 (661)
T PHA02917 341 FGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKK 420 (661)
T ss_pred cCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhh
Confidence 665 5699999999999998765533321 11134999999998543
Q ss_pred ----------CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC-CCCCCCCCCCCCccccchhHHH
Q 010335 233 ----------NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSVL 298 (513)
Q Consensus 233 ----------~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~-~~~~~~~~~~~~~~~~~l~~~l 298 (513)
..+++++|+++|||++.+|..|+||||+|+..++.+++++|... ++.+.. +..+.+|+..+.
T Consensus 421 ~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~----d~~G~T~L~~A~ 493 (661)
T PHA02917 421 GLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIR----SNNGYTCIAIAI 493 (661)
T ss_pred ccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCC----CCCCCCHHHHHH
Confidence 35678999999999999999999999999999999888776654 444443 556677765544
No 32
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.96 E-value=3.8e-30 Score=284.40 Aligned_cols=256 Identities=28% Similarity=0.335 Sum_probs=206.7
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
+.+..+++.|+++|+.+.++.++..|.+.+.... .|.||||.|+..++.++|+.++++|++++..+..|+||+|+|++
T Consensus 372 ~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk--~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~ 449 (1143)
T KOG4177|consen 372 EKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGK--NGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAK 449 (1143)
T ss_pred ccCCcchhhhcccCchhHHHhhhhccCCcccCCC--CCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhh
Confidence 3455688888899999999998888888554333 34899999999999999999999999999999999999999999
Q ss_pred cC-CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccc---cchhhhcccCCCCchhhhhhc
Q 010335 88 YG-HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE---VMNTQIEGDRGDGSSVKSKCD 163 (513)
Q Consensus 88 ~g-~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 163 (513)
.| +.+++..++++|++++.... .|.||||.|+..|+.++++.|++......... ....+...... .......
T Consensus 450 ~g~~~~~~~~l~~~g~~~n~~s~-~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~---~v~~~~~ 525 (1143)
T KOG4177|consen 450 KGRYLQIARLLLQYGADPNAVSK-QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADED---TVKVAKI 525 (1143)
T ss_pred cccHhhhhhhHhhcCCCcchhcc-ccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhh---hHHHHHH
Confidence 99 88899999999999998885 89999999999999999999997663322211 11111111111 1111111
Q ss_pred hhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243 (513)
Q Consensus 164 ~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~ 243 (513)
.......++.++..|+||||.|+.+|++++|++||++|+|++.+++. |+||||.|+..|+.+++.+|+++
T Consensus 526 l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~----------G~TPLH~Aa~~G~~~i~~LLlk~ 595 (1143)
T KOG4177|consen 526 LLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKL----------GYTPLHQAAQQGHNDIAELLLKH 595 (1143)
T ss_pred HhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCC----------CCChhhHHHHcChHHHHHHHHHc
Confidence 11223346778889999999999999999999999999999999966 99999999999999999999999
Q ss_pred CCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCC
Q 010335 244 GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA 279 (513)
Q Consensus 244 Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~ 279 (513)
||++|..|.+|.|||++|+..|+..++++|......
T Consensus 596 GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 596 GASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred CCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence 999999999999999999999999999888766555
No 33
>PHA02798 ankyrin-like protein; Provisional
Probab=99.96 E-value=1.7e-28 Score=262.63 Aligned_cols=230 Identities=17% Similarity=0.149 Sum_probs=186.2
Q ss_pred CCCcHHHHHHHHc-----CCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcC---CHHHHHHHHHCCCCCCCCCCCCC
Q 010335 8 SASGERLVSAARD-----GDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG---HNEIVALLLENGADVNSRNYCGQ 79 (513)
Q Consensus 8 s~~~~~L~~Aa~~-----G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g---~~eivk~LL~~Gadvn~~d~~g~ 79 (513)
..+.+|||.|+.. +..++++.|+++|++++..+..+ .||||+|+..+ +.+++++|+++|+|++.+|..|.
T Consensus 69 ~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G--~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~ 146 (489)
T PHA02798 69 NEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDG--ETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGF 146 (489)
T ss_pred CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCc--CcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCC
Confidence 3456899998864 77999999999999998766554 99999999986 78999999999999999999999
Q ss_pred hHHHHHHHcCC---HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHc----CCHHHHHHHHHccCCCCccccchh---h--
Q 010335 80 TALMQACRYGH---WEVVQTLLLFRCNVTRADYLSGRTALHFAAVN----GHVRCIRLVVADFVPSVPFEVMNT---Q-- 147 (513)
Q Consensus 80 TpLh~A~~~g~---~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~----g~~~iv~~Ll~~~~~~~~~~~~~~---~-- 147 (513)
||||+|++.|+ .+++++|+++|++++..++..|.||||.++.. ++.+++++|+++|........... .
T Consensus 147 tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~ 226 (489)
T PHA02798 147 TMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEY 226 (489)
T ss_pred cHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHH
Confidence 99999999998 99999999999999988766899999999765 489999999999875433211000 0
Q ss_pred ---hc-ccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCc
Q 010335 148 ---IE-GDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223 (513)
Q Consensus 148 ---~~-~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~T 223 (513)
.. ............ ......++.+|..|+||||+|+..|+.+++++|+++|+|++..+.. |.|
T Consensus 227 l~~l~~~~~~~~~~i~~~---l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~----------G~T 293 (489)
T PHA02798 227 LNSLLYDNKRFKKNILDF---IFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITEL----------GNT 293 (489)
T ss_pred HHHHHhhcccchHHHHHH---HHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCC----------CCc
Confidence 00 000000000000 0111357889999999999999999999999999999999999977 999
Q ss_pred hhHHHhhCCCHHHHHHHHHCCCCCCCcCC
Q 010335 224 PLHFAACGGNLKCCQVLLSRGASRMSLNC 252 (513)
Q Consensus 224 pLh~Aa~~g~~eivk~LL~~Gad~~~~d~ 252 (513)
|||+|+..++.++++.|+++|++++..+.
T Consensus 294 pL~~A~~~~~~~iv~~lL~~~~~~~~i~~ 322 (489)
T PHA02798 294 CLFTAFENESKFIFNSILNKKPNKNTISY 322 (489)
T ss_pred HHHHHHHcCcHHHHHHHHccCCCHHHHHH
Confidence 99999999999999999999999875543
No 34
>PHA02795 ankyrin-like protein; Provisional
Probab=99.96 E-value=1.5e-28 Score=251.38 Aligned_cols=206 Identities=14% Similarity=0.076 Sum_probs=178.2
Q ss_pred HHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC------CCCCCCChHHHHHHH--cCCHHHHHHH
Q 010335 26 AKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN------SRNYCGQTALMQACR--YGHWEVVQTL 97 (513)
Q Consensus 26 vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn------~~d~~g~TpLh~A~~--~g~~eiVk~L 97 (513)
-++++.+|.+++.+..++ +|+..+..|++++|+.+|+++| .++..++|+||.|+. +|+.++|++|
T Consensus 65 ~~~~~~~~~~i~~~~~~~-------~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~L 137 (437)
T PHA02795 65 YDYFRIHRDNIDQYIVDR-------LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFM 137 (437)
T ss_pred HHHHHHcCcchhhhhhhh-------HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHH
Confidence 467888998887655443 8999999999999999999998 788889999999999 8999999999
Q ss_pred HhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCC
Q 010335 98 LLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG 177 (513)
Q Consensus 98 L~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 177 (513)
+++||+++.. ++.||||+|+..++.+++++|+++|++..... ..+..+..
T Consensus 138 I~~GADIn~~---~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~---------------------------~~~l~~~~ 187 (437)
T PHA02795 138 VDHGAVIYKI---ECLNAYFRGICKKESSVVEFILNCGIPDENDV---------------------------KLDLYKII 187 (437)
T ss_pred HHCCCCCCCC---CCCCHHHHHHHcCcHHHHHHHHhcCCcccccc---------------------------cchhhhhh
Confidence 9999999873 46899999999999999999999876321100 01112234
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcH
Q 010335 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 257 (513)
Q Consensus 178 G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~Tp 257 (513)
+.|++|.|+.+++.+++++|+++|+++|.++.. |.||||+|+..|+.+++++|+++||+++.+|..|+||
T Consensus 188 ~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~----------G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~Tp 257 (437)
T PHA02795 188 QYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAG----------GRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTC 257 (437)
T ss_pred ccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 679999999999999999999999999999977 9999999999999999999999999999999999999
Q ss_pred HHHHHHcCc--------cchhhhcCCCCC
Q 010335 258 LDVARMWGR--------HWLEPLLAPSSD 278 (513)
Q Consensus 258 L~~A~~~g~--------~~iv~lL~~~~~ 278 (513)
||+|+..|+ .+++++|+..+.
T Consensus 258 Lh~Aa~~g~~~~~~~~~~eIvelLL~~ga 286 (437)
T PHA02795 258 LDVAVDRGSVIARRETHLKILEILLREPL 286 (437)
T ss_pred HHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence 999999984 478887776543
No 35
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.95 E-value=1.8e-28 Score=242.32 Aligned_cols=190 Identities=34% Similarity=0.397 Sum_probs=170.2
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhc-CCCCc------cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDC-NPCLA------KYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQT 80 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~-~~~~~------~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~T 80 (513)
+.+++||..|+++|+.++|++|+++ +.+.. +....-.|-+||..|+..||+++|+.|+++|++||.......|
T Consensus 40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNSt 119 (615)
T KOG0508|consen 40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNST 119 (615)
T ss_pred cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCc
Confidence 4577999999999999999999994 43332 1112223589999999999999999999999999999888899
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhh
Q 010335 81 ALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS 160 (513)
Q Consensus 81 pLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (513)
||-.||..|++++||+|+++|+|++..+. .|.|.||+|++.||.+++++|++.+++
T Consensus 120 PLraACfDG~leivKyLvE~gad~~Ianr-hGhTcLmIa~ykGh~~I~qyLle~gAD----------------------- 175 (615)
T KOG0508|consen 120 PLRAACFDGHLEIVKYLVEHGADPEIANR-HGHTCLMIACYKGHVDIAQYLLEQGAD----------------------- 175 (615)
T ss_pred cHHHHHhcchhHHHHHHHHcCCCCccccc-CCCeeEEeeeccCchHHHHHHHHhCCC-----------------------
Confidence 99999999999999999999999999886 999999999999999999999988765
Q ss_pred hhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHH
Q 010335 161 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240 (513)
Q Consensus 161 ~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~L 240 (513)
+|.++..|+|+||.++..|+++++++|+.+|+.+..-. .|.|||..|+..|+.++|.+|
T Consensus 176 ----------vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~-----------~GmtPL~~Aa~tG~~~iVe~L 234 (615)
T KOG0508|consen 176 ----------VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDG-----------HGMTPLLLAAVTGHTDIVERL 234 (615)
T ss_pred ----------cchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecC-----------CCCchHHHHhhhcchHHHHHH
Confidence 88899999999999999999999999999999875433 399999999999999999999
Q ss_pred HH
Q 010335 241 LS 242 (513)
Q Consensus 241 L~ 242 (513)
++
T Consensus 235 ~~ 236 (615)
T KOG0508|consen 235 LQ 236 (615)
T ss_pred hc
Confidence 95
No 36
>PHA02792 ankyrin-like protein; Provisional
Probab=99.95 E-value=3.8e-27 Score=249.40 Aligned_cols=275 Identities=12% Similarity=0.053 Sum_probs=200.7
Q ss_pred HHHHH-HHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHH-cCCHHHHHHHHHCCCCCC-----------------
Q 010335 12 ERLVS-AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAA-KGHNEIVALLLENGADVN----------------- 72 (513)
Q Consensus 12 ~~L~~-Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~-~g~~eivk~LL~~Gadvn----------------- 72 (513)
++++. |...|++|+|++|+++|++++.... ++.||||+|+. .+++|++++|+++|+|++
T Consensus 73 ~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n--~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~ 150 (631)
T PHA02792 73 DIFEYLCSDNIDIELLKLLISKGLEINSIKN--GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRA 150 (631)
T ss_pred cHHHHHHHhcccHHHHHHHHHcCCCcccccC--CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccc
Confidence 35544 7888999999999999999986543 35899999976 699999999999998732
Q ss_pred -------------------CCCCCCChHHHHHHHcC-------CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC--C
Q 010335 73 -------------------SRNYCGQTALMQACRYG-------HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG--H 124 (513)
Q Consensus 73 -------------------~~d~~g~TpLh~A~~~g-------~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g--~ 124 (513)
..|..|.||||+|+.++ +.|+++.|+.+|++++..+. .|.||||+|+.+. .
T Consensus 151 ~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~-~g~t~l~~~~~~~~i~ 229 (631)
T PHA02792 151 EYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTY-REHTTLYYYVDKCDIK 229 (631)
T ss_pred cccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCC-CCChHHHHHHHcccch
Confidence 34556999999999999 89999999999999999886 8999999999999 8
Q ss_pred HHHHHHHHHccCCCCc-------------------cc--cchhhhcccC--CC---------Cchh--h-hhh---chh-
Q 010335 125 VRCIRLVVADFVPSVP-------------------FE--VMNTQIEGDR--GD---------GSSV--K-SKC---DQS- 165 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~-------------------~~--~~~~~~~~~~--~~---------~~~~--~-~~~---~~~- 165 (513)
.+++++|++....... .. .....+.... +. .... . ... .+.
T Consensus 230 ~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~ 309 (631)
T PHA02792 230 REIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDL 309 (631)
T ss_pred HHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHH
Confidence 9999999864221100 00 0000000000 00 0000 0 000 000
Q ss_pred -------------HHHHhcccc----cCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHH
Q 010335 166 -------------ALSKFVNKA----ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 228 (513)
Q Consensus 166 -------------~~~~~i~~~----d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A 228 (513)
.++.++... ...+...++.|+..|+.++|++|+++|||++..+.. +.+.||||+|
T Consensus 310 l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~--------g~~~TpLh~A 381 (631)
T PHA02792 310 LSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDN--------IINIMPLFPT 381 (631)
T ss_pred HHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCC--------CCChhHHHHH
Confidence 011111111 113566799999999999999999999999998865 2357999998
Q ss_pred hhCCCHH---HHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCC-CCCCCCCCCccccchhHHHHHH
Q 010335 229 ACGGNLK---CCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA-VMPRFHPSNYLSLPLLSVLNVA 301 (513)
Q Consensus 229 a~~g~~e---ivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~-~~~~~~~~~~~~~~l~~~l~~a 301 (513)
...+..+ ++++|+++|||+|.+|..|+||||+|+..++.+++++|...+.. +. .+..+.+|+..+...+
T Consensus 382 ~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~----kD~~G~TpL~~A~~~~ 454 (631)
T PHA02792 382 LSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINI----TTKYGSTCIGICVILA 454 (631)
T ss_pred HHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHHHH
Confidence 8877654 68999999999999999999999999999999999888776433 32 2667778877665433
No 37
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.95 E-value=3.6e-27 Score=223.79 Aligned_cols=174 Identities=18% Similarity=0.192 Sum_probs=151.8
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCC-CCCChHHHHHH
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG--HNEIVALLLENGADVNSRN-YCGQTALMQAC 86 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g--~~eivk~LL~~Gadvn~~d-~~g~TpLh~A~ 86 (513)
..++|+.|++.|++++|+.|++... .. +..|.||||+|+..+ +.+++++|+++|+++|.++ ..|.||||+|+
T Consensus 21 ~~~pL~~A~~~~~~~~vk~Li~~~n---~~--~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~ 95 (209)
T PHA02859 21 YCNPLFYYVEKDDIEGVKKWIKFVN---DC--NDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL 95 (209)
T ss_pred cCcHHHHHHHhCcHHHHHHHHHhhh---cc--CccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence 3578999999999999999998632 22 233489999999855 8999999999999999997 58999999988
Q ss_pred Hc---CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHH--cCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhh
Q 010335 87 RY---GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV--NGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161 (513)
Q Consensus 87 ~~---g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (513)
.. ++.+++++|+++|++++..+. .|.||||+|+. .++.+++++|++.+..
T Consensus 96 ~~~~~~~~eiv~~Ll~~gadin~~d~-~G~TpLh~a~~~~~~~~~iv~~Li~~gad------------------------ 150 (209)
T PHA02859 96 SFNKNVEPEILKILIDSGSSITEEDE-DGKNLLHMYMCNFNVRINVIKLLIDSGVS------------------------ 150 (209)
T ss_pred HhCccccHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhccCCHHHHHHHHHcCCC------------------------
Confidence 64 479999999999999999886 99999999986 4689999999987754
Q ss_pred hchhHHHHhcccccCCCCcHHHH-HHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCC
Q 010335 162 CDQSALSKFVNKAADGGITALHM-AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 232 (513)
Q Consensus 162 ~~~~~~~~~i~~~d~~G~TpLh~-Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g 232 (513)
++.+|..|.||||. |+..++.+++++|+++|++++.++.. |.||||+|+..+
T Consensus 151 ---------in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~----------g~tpl~la~~~~ 203 (209)
T PHA02859 151 ---------FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKS----------GYNCYDLIKFRN 203 (209)
T ss_pred ---------cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHhhhh
Confidence 67788899999996 56788999999999999999999976 999999998754
No 38
>PHA02730 ankyrin-like protein; Provisional
Probab=99.95 E-value=7.9e-27 Score=249.46 Aligned_cols=282 Identities=12% Similarity=0.086 Sum_probs=201.3
Q ss_pred CCcHHHHHHHHcC---CHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCC--CCCCCCCCChH
Q 010335 9 ASGERLVSAARDG---DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG--HNEIVALLLENGAD--VNSRNYCGQTA 81 (513)
Q Consensus 9 ~~~~~L~~Aa~~G---~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g--~~eivk~LL~~Gad--vn~~d~~g~Tp 81 (513)
.+.++||.|+..| +.++|++||++|++++..+.. |.||||+|+..+ +.++|++|++.|++ ++..+.-+.+|
T Consensus 40 ~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~--G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~ 117 (672)
T PHA02730 40 RGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNE--GLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFD 117 (672)
T ss_pred CCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCC--CCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCch
Confidence 3578999999997 599999999999999865544 499999999977 79999999999664 47777779999
Q ss_pred HHHHHH--cCCHHHHHHHHh-cCCCCCcccC----CCCCcHHHHHHHcCCHHHHHHHHHccCCCCcccc----chhhh--
Q 010335 82 LMQACR--YGHWEVVQTLLL-FRCNVTRADY----LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEV----MNTQI-- 148 (513)
Q Consensus 82 Lh~A~~--~g~~eiVk~LL~-~ga~~~~~~~----~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~----~~~~~-- 148 (513)
|+.++. +++.++|++|+. .+++++...+ ..|.+|+++|...++.++|++|+++|........ .....
T Consensus 118 l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~ 197 (672)
T PHA02730 118 LYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCK 197 (672)
T ss_pred HHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccc
Confidence 999988 899999999996 6778776632 3789999999999999999999999887632211 00000
Q ss_pred --------cccCCCCchhhhhhchhHHHHhcccccCCCCcHHHH--HHHcCCHHHHHHHHH-------------------
Q 010335 149 --------EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHM--AALNGYFDCVQLLLD------------------- 199 (513)
Q Consensus 149 --------~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~--Aa~~g~~eiv~~Ll~------------------- 199 (513)
......................++.+|..|.||||+ |...|+.|+|++|++
T Consensus 198 ~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~ 277 (672)
T PHA02730 198 NSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGV 277 (672)
T ss_pred hhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhh
Confidence 000000000000000111223478899999999995 555677999999999
Q ss_pred -------------cCCCcccccccC--Ccc-cc-------ccCCCCc---------------------hhHHHhhCC---
Q 010335 200 -------------LHANVSAVTFHY--GTS-MD-------LIGAGST---------------------PLHFAACGG--- 232 (513)
Q Consensus 200 -------------~Gadvn~~~~~~--~~~-~~-------~~~~G~T---------------------pLh~Aa~~g--- 232 (513)
+|+|+...+..- +.+ .+ ....|.+ .||.=..++
T Consensus 278 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v 357 (672)
T PHA02730 278 LADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMV 357 (672)
T ss_pred HHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcC
Confidence 677775522110 000 00 1122433 677766655
Q ss_pred CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCc----cchhhhcCCCCC-CCCCCCCCCCccccchh
Q 010335 233 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR----HWLEPLLAPSSD-AVMPRFHPSNYLSLPLL 295 (513)
Q Consensus 233 ~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~----~~iv~lL~~~~~-~~~~~~~~~~~~~~~l~ 295 (513)
+.+++++|+++||+++.. ..|+||||+|+..++ .+++++|..++. .++. ..+..+.+|+.
T Consensus 358 ~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN--~kd~~G~T~Lh 422 (672)
T PHA02730 358 SIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAIN--HVSNNGRLCMY 422 (672)
T ss_pred cHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccc--ccccCCCchHh
Confidence 689999999999999986 799999999998875 699999987653 2332 12455667764
No 39
>PHA02795 ankyrin-like protein; Provisional
Probab=99.95 E-value=4.9e-27 Score=240.36 Aligned_cols=189 Identities=22% Similarity=0.149 Sum_probs=168.2
Q ss_pred HHHHcCCHHHHHHHHhcCCCCc------cccCCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 16 SAARDGDFVEAKMLLDCNPCLA------KYSTFGGLNSPLHFAAA--KGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 16 ~Aa~~G~~e~vk~LL~~~~~~~------~~~~~~~g~TpLh~Aa~--~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
.|+..+..|+++.|+.+|.+++ .+.. .++|+||+|+. .|+.++|++|+++|||++.. ++.||||.|+.
T Consensus 83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~--~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~ 158 (437)
T PHA02795 83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCN--SVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGIC 158 (437)
T ss_pred HHhhcchHHHHHHHHhcccccchhhhhhhccc--cccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHH
Confidence 7899999999999999999977 3323 34999999999 99999999999999999985 45899999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccC-----CCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhh
Q 010335 88 YGHWEVVQTLLLFRCNVTRADY-----LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~-----~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (513)
.|+.++|++|+.+|++...... ..+.|++|.|...++.+++++|++++++
T Consensus 159 ~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD------------------------- 213 (437)
T PHA02795 159 KKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED------------------------- 213 (437)
T ss_pred cCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC-------------------------
Confidence 9999999999999985433221 2478999999999999999999988765
Q ss_pred chhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCC--------H
Q 010335 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN--------L 234 (513)
Q Consensus 163 ~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~--------~ 234 (513)
++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+ .
T Consensus 214 --------IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~----------G~TpLh~Aa~~g~~~~~~~~~~ 275 (437)
T PHA02795 214 --------INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSN----------GYTCLDVAVDRGSVIARRETHL 275 (437)
T ss_pred --------cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC----------CCCHHHHHHHcCCcccccccHH
Confidence 7888999999999999999999999999999999999977 9999999999984 6
Q ss_pred HHHHHHHHCCCCCCCcC
Q 010335 235 KCCQVLLSRGASRMSLN 251 (513)
Q Consensus 235 eivk~LL~~Gad~~~~d 251 (513)
+++++|+++|++++..+
T Consensus 276 eIvelLL~~gadI~~~~ 292 (437)
T PHA02795 276 KILEILLREPLSIDCIK 292 (437)
T ss_pred HHHHHHHhCCCCCCchh
Confidence 99999999999987654
No 40
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.95 E-value=6.6e-28 Score=266.78 Aligned_cols=281 Identities=30% Similarity=0.311 Sum_probs=223.7
Q ss_pred CCCCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q 010335 6 GCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQA 85 (513)
Q Consensus 6 g~s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A 85 (513)
+...+.++||.|++.|+.+++.+|++.++.-..... .+.||+|.|+..|..+++++|+..|+++|.++..|.||||.|
T Consensus 337 ar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~--k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~a 414 (1143)
T KOG4177|consen 337 ARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEE--KGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVA 414 (1143)
T ss_pred cCcCCcccccHhhhhhhHHHHHHhhccccccCcccc--cCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeeh
Confidence 345667899999999999988888888776544333 348999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC-CHHHHHHHHHccCCCCcc---ccchhhhcccCCCCchhhhh
Q 010335 86 CRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG-HVRCIRLVVADFVPSVPF---EVMNTQIEGDRGDGSSVKSK 161 (513)
Q Consensus 86 ~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g-~~~iv~~Ll~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 161 (513)
+.+++..+|+.+++.|++.+..+. .|+|++|+|+..| ..++...++..+.+.... ......++...+........
T Consensus 415 a~~~~~~~v~l~l~~gA~~~~~~~-lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~ll 493 (1143)
T KOG4177|consen 415 AHYGNPRVVKLLLKRGASPNAKAK-LGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLL 493 (1143)
T ss_pred hhccCcceEEEEeccCCChhhHhh-cCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHh
Confidence 999999999999999999999886 8899999999999 888888888776654322 12222223333322222211
Q ss_pred hchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHH
Q 010335 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 241 (513)
Q Consensus 162 ~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL 241 (513)
.... ..++.....|.|+||+|+..+++.+++.|+++|++++.++.. |.||||+|+.+|+..+||+||
T Consensus 494 le~~---~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r----------~~TpLh~A~~~g~v~~VkfLL 560 (1143)
T KOG4177|consen 494 LEGG---ANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGR----------GYTPLHVAVHYGNVDLVKFLL 560 (1143)
T ss_pred hhcC---CccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhccc----------ccchHHHHHhcCCchHHHHhh
Confidence 1111 224555667889999999999999999999999999999876 999999999999999999999
Q ss_pred HCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC-CCCCCCCCCCccccchhHHHHHHHHhCCCCCC
Q 010335 242 SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD-AVMPRFHPSNYLSLPLLSVLNVARECGLLSST 310 (513)
Q Consensus 242 ~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~-~~~~~~~~~~~~~~~l~~~l~~a~e~g~~~~~ 310 (513)
++|||++.+++.|+||||.|+..|+.+++.+|.+++. ++.. +..+.+| +++|.+.|..++.
T Consensus 561 e~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~----d~~g~Tp----L~iA~~lg~~~~~ 622 (1143)
T KOG4177|consen 561 EHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAA----DLDGFTP----LHIAVRLGYLSVV 622 (1143)
T ss_pred hCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcc----cccCcch----hHHHHHhcccchh
Confidence 9999999999999999999999999999988877554 4444 4445555 6667777665544
No 41
>PHA02730 ankyrin-like protein; Provisional
Probab=99.95 E-value=1.6e-26 Score=247.09 Aligned_cols=216 Identities=19% Similarity=0.209 Sum_probs=181.0
Q ss_pred HHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHH--HHHcCCHHHHHHHHH-----------------------------
Q 010335 18 ARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHF--AAAKGHNEIVALLLE----------------------------- 66 (513)
Q Consensus 18 a~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~--Aa~~g~~eivk~LL~----------------------------- 66 (513)
...++.|+++.||++|++++.....| .||||+ |...|+.|+|++|++
T Consensus 210 ~~~n~~eiv~lLIs~GadIN~kd~~G--~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (672)
T PHA02730 210 SESLSKDVIKCLIDNNVSIHGRDEGG--SLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFR 287 (672)
T ss_pred hhccCHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhh
Confidence 56789999999999999998766555 999995 555678999999999
Q ss_pred ---CCCCCCC--------------------CCCCCCh---------------------HHHHHHHcC---CHHHHHHHHh
Q 010335 67 ---NGADVNS--------------------RNYCGQT---------------------ALMQACRYG---HWEVVQTLLL 99 (513)
Q Consensus 67 ---~Gadvn~--------------------~d~~g~T---------------------pLh~A~~~g---~~eiVk~LL~ 99 (513)
+|+|+.. .|..|.+ .||.-..++ +.++|++|++
T Consensus 288 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs 367 (672)
T PHA02730 288 VTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLD 367 (672)
T ss_pred cccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHH
Confidence 7888765 5566655 677777766 6999999999
Q ss_pred cCCCCCcccCCCCCcHHHHHHHcCC----HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhccccc
Q 010335 100 FRCNVTRADYLSGRTALHFAAVNGH----VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA 175 (513)
Q Consensus 100 ~ga~~~~~~~~~G~TpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 175 (513)
+|++++.. ..|.||||+|+..++ .+++++|+++|+.. .++.+|
T Consensus 368 ~GAdIN~k--~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~-------------------------------dIN~kd 414 (672)
T PHA02730 368 NGATMDKT--TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHM-------------------------------AINHVS 414 (672)
T ss_pred CCCCCCcC--CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCc-------------------------------cccccc
Confidence 99999975 489999999998875 89999999886521 167788
Q ss_pred CCCCcHHHH---HHHcC---------CHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335 176 DGGITALHM---AALNG---------YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243 (513)
Q Consensus 176 ~~G~TpLh~---Aa~~g---------~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~ 243 (513)
..|.||||. |...+ ..+++++|+++|+++|.+|.. |.||||+|+..++.+++++|+++
T Consensus 415 ~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~----------G~TPLh~Aa~~~~~eive~LI~~ 484 (672)
T PHA02730 415 NNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNE----------NKTLLYYAVDVNNIQFARRLLEY 484 (672)
T ss_pred cCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCC----------CCCHHHHHHHhCCHHHHHHHHHC
Confidence 899999984 33332 235799999999999999987 99999999999999999999999
Q ss_pred CCCCCCcCC-CCCcHHHHHHHc--CccchhhhcCCCCC
Q 010335 244 GASRMSLNC-NGWLPLDVARMW--GRHWLEPLLAPSSD 278 (513)
Q Consensus 244 Gad~~~~d~-~G~TpL~~A~~~--g~~~iv~lL~~~~~ 278 (513)
||+++.+|. .|+||||+|+.. ++.+++++|+..+.
T Consensus 485 GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga 522 (672)
T PHA02730 485 GASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHP 522 (672)
T ss_pred CCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCC
Confidence 999999997 599999999874 67889888876654
No 42
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.94 E-value=1e-25 Score=254.55 Aligned_cols=176 Identities=24% Similarity=0.282 Sum_probs=161.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
+.++||.||..|+.++++.|++.|+|+|..|..|.||||+|+.+|+.++|++|+++|++++..+. +|.||||+|+..|+
T Consensus 525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~-~G~TpL~~A~~~g~ 603 (823)
T PLN03192 525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDA-NGNTALWNAISAKH 603 (823)
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCC-CCCCHHHHHHHhCC
Confidence 37899999999999999999999999999999999999999999999999999999999999886 99999999999999
Q ss_pred HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335 125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 204 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv 204 (513)
.+++++|+..+... ....|.++||.|+.+|+.+++++|+++|+|+
T Consensus 604 ~~iv~~L~~~~~~~-----------------------------------~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi 648 (823)
T PLN03192 604 HKIFRILYHFASIS-----------------------------------DPHAAGDLLCTAAKRNDLTAMKELLKQGLNV 648 (823)
T ss_pred HHHHHHHHhcCccc-----------------------------------CcccCchHHHHHHHhCCHHHHHHHHHCCCCC
Confidence 99999998643211 1234668999999999999999999999999
Q ss_pred ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCC-CcHHHHHHHcCc
Q 010335 205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG-WLPLDVARMWGR 266 (513)
Q Consensus 205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G-~TpL~~A~~~g~ 266 (513)
|..|.. |.||||+|+..|+.+++++|+++||+++..|..| +||++++.....
T Consensus 649 n~~d~~----------G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~ 701 (823)
T PLN03192 649 DSEDHQ----------GATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQK 701 (823)
T ss_pred CCCCCC----------CCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 999977 9999999999999999999999999999999998 999998866443
No 43
>PHA02792 ankyrin-like protein; Provisional
Probab=99.93 E-value=4.2e-25 Score=233.90 Aligned_cols=241 Identities=15% Similarity=0.077 Sum_probs=172.2
Q ss_pred CcHHHHHHHH-cCCHHHHHHHHhcCCCCcc------------------------c----------cCCCCCCcHHHHHHH
Q 010335 10 SGERLVSAAR-DGDFVEAKMLLDCNPCLAK------------------------Y----------STFGGLNSPLHFAAA 54 (513)
Q Consensus 10 ~~~~L~~Aa~-~G~~e~vk~LL~~~~~~~~------------------------~----------~~~~~g~TpLh~Aa~ 54 (513)
+.++|+.|+. .|+.|++++||++|++... + -.+..|.||||+|+.
T Consensus 105 ~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~ 184 (631)
T PHA02792 105 INIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYII 184 (631)
T ss_pred CCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHh
Confidence 3457788866 6999999999999976310 0 112247999999999
Q ss_pred cC-------CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHhcCCCCC-------------------c
Q 010335 55 KG-------HNEIVALLLENGADVNSRNYCGQTALMQACRYG--HWEVVQTLLLFRCNVT-------------------R 106 (513)
Q Consensus 55 ~g-------~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g--~~eiVk~LL~~ga~~~-------------------~ 106 (513)
.+ +.++++.|+++|++++.+|..|.||||+|+.+. ..|++++|++.--... .
T Consensus 185 ~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~ 264 (631)
T PHA02792 185 TRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHK 264 (631)
T ss_pred hCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccC
Confidence 99 899999999999999999999999999999999 7889999875311000 0
Q ss_pred ccC------CCCCc------------------------------HHHHHHHcC--CHHHHHHHHHccCCCCccccch-hh
Q 010335 107 ADY------LSGRT------------------------------ALHFAAVNG--HVRCIRLVVADFVPSVPFEVMN-TQ 147 (513)
Q Consensus 107 ~~~------~~G~T------------------------------pLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~-~~ 147 (513)
.+. ..|.+ .||.=..++ +.+++++|++.|.......... ..
T Consensus 265 id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~ 344 (631)
T PHA02792 265 IDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYF 344 (631)
T ss_pred ccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHH
Confidence 000 01111 123333344 6788889998887653211111 11
Q ss_pred hcccCCCCchhhhhhchhHHHHhcccccCCC--CcHHHHHHHcCCH---HHHHHHHHcCCCcccccccCCccccccCCCC
Q 010335 148 IEGDRGDGSSVKSKCDQSALSKFVNKAADGG--ITALHMAALNGYF---DCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 222 (513)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G--~TpLh~Aa~~g~~---eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~ 222 (513)
.+...+....+.... .....++.+|..| .||||+|+..... +++++|+++|+|+|.++.. |.
T Consensus 345 ~Aa~~gn~eIVelLI---s~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~----------G~ 411 (631)
T PHA02792 345 QKFDNRDPKVVEYIL---KNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKH----------GR 411 (631)
T ss_pred HHHHcCCHHHHHHHH---HcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccccccc----------Cc
Confidence 111111111111111 1122356667664 6999998877664 4689999999999999977 99
Q ss_pred chhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHH
Q 010335 223 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM 263 (513)
Q Consensus 223 TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~ 263 (513)
||||+|+..++.+++++|+++|++++.+|..|.|||++|+.
T Consensus 412 TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 412 SILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI 452 (631)
T ss_pred chHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999976
No 44
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.93 E-value=3e-25 Score=249.05 Aligned_cols=233 Identities=22% Similarity=0.146 Sum_probs=177.9
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhc--CCCCccccCCCCCCcHHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDC--NPCLAKYSTFGGLNSPLH-FAAAKGHNEIVALLLENGADVNSRNYCGQTALMQ 84 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~--~~~~~~~~~~~~g~TpLh-~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~ 84 (513)
+..+++|+.|++.||++.++.+++. +.+++. .+..|.|||| .|+.+++.+++++|+++|+ .+..|.||||.
T Consensus 15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~--~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~ 88 (743)
T TIGR00870 15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINC--PDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHA 88 (743)
T ss_pred CHHHHHHHHHHHcCCHHHHHHHhccccccCCCC--cCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHH
Confidence 3456789999999999999999998 555543 3344599999 8889999999999999987 67789999999
Q ss_pred HHHcC---CHHHHHHHHhcCCC---------CCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccC
Q 010335 85 ACRYG---HWEVVQTLLLFRCN---------VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDR 152 (513)
Q Consensus 85 A~~~g---~~eiVk~LL~~ga~---------~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~ 152 (513)
|+..+ ..++++++...+.+ ........|.||||+|+.+|+.+++++|+++|++...........
T Consensus 89 A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~---- 164 (743)
T TIGR00870 89 ISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFV---- 164 (743)
T ss_pred HHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhh----
Confidence 99832 23344555544432 111122369999999999999999999999887644111100000
Q ss_pred CCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCC
Q 010335 153 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 232 (513)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g 232 (513)
..........|.||||.|+..|+.+++++|+++|+|++..|.. |+||||+|+..+
T Consensus 165 ---------------~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~----------g~T~Lh~A~~~~ 219 (743)
T TIGR00870 165 ---------------KSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSL----------GNTLLHLLVMEN 219 (743)
T ss_pred ---------------cCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhh----------hhHHHHHHHhhh
Confidence 0000112246899999999999999999999999999999977 999999999987
Q ss_pred ---------CHHHHHHHHHCCCCC-------CCcCCCCCcHHHHHHHcCccchhhhcCC
Q 010335 233 ---------NLKCCQVLLSRGASR-------MSLNCNGWLPLDVARMWGRHWLEPLLAP 275 (513)
Q Consensus 233 ---------~~eivk~LL~~Gad~-------~~~d~~G~TpL~~A~~~g~~~iv~lL~~ 275 (513)
...+.+++++.++.. +..|.+|.||||+|+..|+.+++++|++
T Consensus 220 ~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~ 278 (743)
T TIGR00870 220 EFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA 278 (743)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence 234666776665553 6779999999999999999999998877
No 45
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.92 E-value=9.2e-26 Score=203.37 Aligned_cols=224 Identities=26% Similarity=0.308 Sum_probs=192.4
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g 89 (513)
+++.+-.|.+.|+-++++.++.-.++........ |+++++.|+-.|+.+.+..+|.+|+..|..+..+++|+++++...
T Consensus 62 ge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~-g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql 140 (296)
T KOG0502|consen 62 GESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPE-GWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQL 140 (296)
T ss_pred CCcccchhhhcCCcHHHHHhhccCCCCCCCCCch-hhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHH
Confidence 4455677899999999999888777765544333 699999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335 90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK 169 (513)
Q Consensus 90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
+++++..|.+.. +|..|. .|+|||.||+..|++.+|++|+..|++..
T Consensus 141 ~L~~~~~~~~n~--VN~~De-~GfTpLiWAaa~G~i~vV~fLL~~GAdp~------------------------------ 187 (296)
T KOG0502|consen 141 HLDVVDLLVNNK--VNACDE-FGFTPLIWAAAKGHIPVVQFLLNSGADPD------------------------------ 187 (296)
T ss_pred HHHHHHHHhhcc--ccCccc-cCchHhHHHHhcCchHHHHHHHHcCCChh------------------------------
Confidence 999988876654 455554 89999999999999999999998877532
Q ss_pred hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335 170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 249 (513)
Q Consensus 170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~ 249 (513)
.-..+..++|++|...|..++|++||+.+.|+|..|.+ |-|||.||++.|+.++|+.||+.|||++.
T Consensus 188 ---~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwN----------GgTpLlyAvrgnhvkcve~Ll~sGAd~t~ 254 (296)
T KOG0502|consen 188 ---ALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWN----------GGTPLLYAVRGNHVKCVESLLNSGADVTQ 254 (296)
T ss_pred ---hhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccC----------CCceeeeeecCChHHHHHHHHhcCCCccc
Confidence 22233459999999999999999999999999999988 99999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHcCccchhhhcCCCCCCC
Q 010335 250 LNCNGWLPLDVARMWGRHWLEPLLAPSSDAV 280 (513)
Q Consensus 250 ~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~~ 280 (513)
.+..|++++.+|+..|+..+-+.|.++....
T Consensus 255 e~dsGy~~mdlAValGyr~Vqqvie~h~lkl 285 (296)
T KOG0502|consen 255 EDDSGYWIMDLAVALGYRIVQQVIEKHALKL 285 (296)
T ss_pred ccccCCcHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999999985555555444433
No 46
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-24 Score=219.65 Aligned_cols=234 Identities=26% Similarity=0.340 Sum_probs=187.6
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g 89 (513)
.+-.++.|++.|+.+.+..||..|.+++.++.++ .|+||-++...+.+||++|+++|++||..|..|+||||.|+..|
T Consensus 40 ~sa~~l~A~~~~d~~ev~~ll~~ga~~~~~n~Dg--lTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg 117 (527)
T KOG0505|consen 40 DSAVFLEACSRGDLEEVRKLLNRGASPNLCNVDG--LTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCG 117 (527)
T ss_pred chHHHHhccccccHHHHHHHhccCCCccccCCcc--chhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccc
Confidence 4456889999999999999999998887766666 99999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335 90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK 169 (513)
Q Consensus 90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
|..++++|+.+|+++...+. +|..|+..+...-..+++..-...-... ........................
T Consensus 118 ~~~i~~~li~~gA~~~avNs-dg~~P~dl~e~ea~~~~l~~~~~r~gi~-------iea~R~~~e~~ml~D~~q~l~~G~ 189 (527)
T KOG0505|consen 118 YLNIVEYLIQHGANLLAVNS-DGNMPYDLAEDEATLDVLETEMARQGID-------IEAARKAEEQTMLDDARQWLNAGA 189 (527)
T ss_pred cHHHHHHHHHhhhhhhhccC-CCCCccccccCcchhHHHHHHHHHhccc-------HHHHhhhhHHHHHHHHHHHHhccc
Confidence 99999999999999887775 7888888876655555554443221110 000000000000111111111222
Q ss_pred hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335 170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 249 (513)
Q Consensus 170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~ 249 (513)
..+..+..|-|.||.|+.+|..++.++|+++|.+++.+|.+ |+||||.|+..|..+++++|+++|++.+.
T Consensus 190 ~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~d----------gWtPlHAAA~Wg~~~~~elL~~~ga~~d~ 259 (527)
T KOG0505|consen 190 ELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYD----------GWTPLHAAAHWGQEDACELLVEHGADMDA 259 (527)
T ss_pred cccccccccchHHHHHHhhhHHHHHHHHHHhccCccccccc----------CCCcccHHHHhhhHhHHHHHHHhhcccch
Confidence 34555666999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHH
Q 010335 250 LNCNGWLPLDVARM 263 (513)
Q Consensus 250 ~d~~G~TpL~~A~~ 263 (513)
.+..|.||+.+|..
T Consensus 260 ~t~~g~~p~dv~de 273 (527)
T KOG0505|consen 260 KTKMGETPLDVADE 273 (527)
T ss_pred hhhcCCCCccchhh
Confidence 99999999999876
No 47
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.91 E-value=3.4e-24 Score=223.03 Aligned_cols=245 Identities=24% Similarity=0.255 Sum_probs=197.4
Q ss_pred cHHHHHHHHcCCHHHHHHHHhcC-----CC------CccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Q 010335 11 GERLVSAARDGDFVEAKMLLDCN-----PC------LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ 79 (513)
Q Consensus 11 ~~~L~~Aa~~G~~e~vk~LL~~~-----~~------~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~ 79 (513)
.+-|..|++.||++.+..||+.. +- ......+..|.|+||.|+.+|+.+++++|++..+-++..|..|.
T Consensus 4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~ 83 (854)
T KOG0507|consen 4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGI 83 (854)
T ss_pred hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCc
Confidence 34599999999999999999752 11 11112222458999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhh
Q 010335 80 TALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVK 159 (513)
Q Consensus 80 TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (513)
+|||+|++.|+.++||+|+.++..++.... .|.||||.|+.+||.+++.+|+.++.+
T Consensus 84 ~plhlaaw~g~~e~vkmll~q~d~~na~~~-e~~tplhlaaqhgh~dvv~~Ll~~~ad---------------------- 140 (854)
T KOG0507|consen 84 LPLHLAAWNGNLEIVKMLLLQTDILNAVNI-ENETPLHLAAQHGHLEVVFYLLKKNAD---------------------- 140 (854)
T ss_pred ceEEehhhcCcchHHHHHHhcccCCCcccc-cCcCccchhhhhcchHHHHHHHhcCCC----------------------
Confidence 999999999999999999999987777774 999999999999999999999988765
Q ss_pred hhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHH
Q 010335 160 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239 (513)
Q Consensus 160 ~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~ 239 (513)
.-.++..+.|+|-+|++.|..++|+.|+....++...+.. + ....--.+.+|||+|+++|+.++++.
T Consensus 141 -----------p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~-~-~~~~~~~~~~plHlaakngh~~~~~~ 207 (854)
T KOG0507|consen 141 -----------PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRV-G-DIKRPFPAIYPLHLAAKNGHVECMQA 207 (854)
T ss_pred -----------ccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccC-C-CCCCCCCCcCCcchhhhcchHHHHHH
Confidence 3346677889999999999999999999874433321111 1 00011237899999999999999999
Q ss_pred HHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC-CCCCCCCCCCCCccccchhH
Q 010335 240 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLS 296 (513)
Q Consensus 240 LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~-~~~~~~~~~~~~~~~~~l~~ 296 (513)
|++.|.|+|.....| |+||.|+..|..++|.+|++. ....+. +.++++++..
T Consensus 208 ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~----n~~~qtaldi 260 (854)
T KOG0507|consen 208 LLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIK----NQHGQTALDI 260 (854)
T ss_pred HHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccc----cccchHHHHH
Confidence 999999999988776 799999999999999877764 333433 5556665443
No 48
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.91 E-value=2.1e-24 Score=224.57 Aligned_cols=217 Identities=29% Similarity=0.292 Sum_probs=190.3
Q ss_pred CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335 9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY 88 (513)
Q Consensus 9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~ 88 (513)
.+-++||.|+.+|+.++++.|++..+-+...... |.+|||+|++.|+.++|++|+.++..+|..+..|.||||.|+++
T Consensus 48 ~gfTalhha~Lng~~~is~llle~ea~ldl~d~k--g~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqh 125 (854)
T KOG0507|consen 48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTK--GILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQH 125 (854)
T ss_pred cchhHHHHHHhcCchHHHHHHhcchhhhhhhhcc--CcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhh
Confidence 3568899999999999999999998877665533 48999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335 89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168 (513)
Q Consensus 89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
||.++|.+|+++|+++-..++ ++.|+|.+|++.|..++++.|+....+... . ....
T Consensus 126 gh~dvv~~Ll~~~adp~i~nn-s~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~---~--------------------~~~~ 181 (854)
T KOG0507|consen 126 GHLEVVFYLLKKNADPFIRNN-SKETVLDLASRFGRAEVVQMLLQKKFPVQS---S--------------------LRVG 181 (854)
T ss_pred cchHHHHHHHhcCCCccccCc-ccccHHHHHHHhhhhHHHHHHhhhccchhh---c--------------------ccCC
Confidence 999999999999999999886 899999999999999999999975211100 0 0000
Q ss_pred HhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCC
Q 010335 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 248 (513)
Q Consensus 169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~ 248 (513)
...++..+.+|||+|+.+||.++++.|++.|.|+|..... -|+||.|+..|..++|.+|++-|.+..
T Consensus 182 --~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~-----------gtalheaalcgk~evvr~ll~~gin~h 248 (854)
T KOG0507|consen 182 --DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTED-----------GTALHEAALCGKAEVVRFLLEIGINTH 248 (854)
T ss_pred --CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccccccc-----------chhhhhHhhcCcchhhhHHHhhccccc
Confidence 2345557889999999999999999999999999998854 589999999999999999999999999
Q ss_pred CcCCCCCcHHHHHHHc
Q 010335 249 SLNCNGWLPLDVARMW 264 (513)
Q Consensus 249 ~~d~~G~TpL~~A~~~ 264 (513)
++|.+|.|+|++-...
T Consensus 249 ~~n~~~qtaldil~d~ 264 (854)
T KOG0507|consen 249 IKNQHGQTALDIIIDL 264 (854)
T ss_pred cccccchHHHHHHHhc
Confidence 9999999999987654
No 49
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.91 E-value=1.8e-23 Score=236.32 Aligned_cols=175 Identities=23% Similarity=0.271 Sum_probs=157.7
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
.....+|+.||..||.++++.|++.|.+++..+.. |.||||+|+..|+.+++++|+++|+|+|.+|.+|.||||+|+.
T Consensus 523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~--G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~ 600 (823)
T PLN03192 523 PNMASNLLTVASTGNAALLEELLKAKLDPDIGDSK--GRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS 600 (823)
T ss_pred ccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence 34567899999999999999999999998765544 4999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335 88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (513)
.|+.+++++|++.++..+. ..|.++||+|+..|+.+++++|++++.+
T Consensus 601 ~g~~~iv~~L~~~~~~~~~---~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad------------------------------ 647 (823)
T PLN03192 601 AKHHKIFRILYHFASISDP---HAAGDLLCTAAKRNDLTAMKELLKQGLN------------------------------ 647 (823)
T ss_pred hCCHHHHHHHHhcCcccCc---ccCchHHHHHHHhCCHHHHHHHHHCCCC------------------------------
Confidence 9999999999988776543 3578999999999999999999987764
Q ss_pred HHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCC-CchhHHHhh
Q 010335 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG-STPLHFAAC 230 (513)
Q Consensus 168 ~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G-~TpLh~Aa~ 230 (513)
++.+|.+|.||||+|+..|+.+++++|+++|++++..+.. | .||++++..
T Consensus 648 ---in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~----------g~~t~~~l~~~ 698 (823)
T PLN03192 648 ---VDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTD----------DDFSPTELREL 698 (823)
T ss_pred ---CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCC----------CCCCHHHHHHH
Confidence 7888999999999999999999999999999999999876 5 889877643
No 50
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.90 E-value=1.1e-24 Score=196.39 Aligned_cols=201 Identities=26% Similarity=0.244 Sum_probs=182.9
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g 89 (513)
+.++++.|+-.|+.+++..+|.++.+.+..+..+ .+|+.+++..-+++++..|.++. +|..|..|+|||+||+.+|
T Consensus 96 g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p--~s~~slsVhql~L~~~~~~~~n~--VN~~De~GfTpLiWAaa~G 171 (296)
T KOG0502|consen 96 GWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMP--WSPLSLSVHQLHLDVVDLLVNNK--VNACDEFGFTPLIWAAAKG 171 (296)
T ss_pred hhhhhhhcCCCCCcceeeeeecccccCCcccccc--CChhhHHHHHHHHHHHHHHhhcc--ccCccccCchHhHHHHhcC
Confidence 5678999999999999999999998887766666 89999999999999998888764 5899999999999999999
Q ss_pred CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335 90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK 169 (513)
Q Consensus 90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
++++|++||+.|+++..... ...++|.+|.+.|..++|++|+....+
T Consensus 172 ~i~vV~fLL~~GAdp~~lgk-~resALsLAt~ggytdiV~lLL~r~vd-------------------------------- 218 (296)
T KOG0502|consen 172 HIPVVQFLLNSGADPDALGK-YRESALSLATRGGYTDIVELLLTREVD-------------------------------- 218 (296)
T ss_pred chHHHHHHHHcCCChhhhhh-hhhhhHhHHhcCChHHHHHHHHhcCCC--------------------------------
Confidence 99999999999999998774 778999999999999999999987654
Q ss_pred hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335 170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 249 (513)
Q Consensus 170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~ 249 (513)
+|..|-+|-|||.+|++.||+++|+.|++.|||++..+.. |.+++.+|+..|+. +|+..|++-++.+.
T Consensus 219 -VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~ds----------Gy~~mdlAValGyr-~Vqqvie~h~lkl~ 286 (296)
T KOG0502|consen 219 -VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDS----------GYWIMDLAVALGYR-IVQQVIEKHALKLC 286 (296)
T ss_pred -cceeccCCCceeeeeecCChHHHHHHHHhcCCCccccccc----------CCcHHHHHHHhhhH-HHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999999866 99999999999998 99999998888888
Q ss_pred cCCCCCcHHH
Q 010335 250 LNCNGWLPLD 259 (513)
Q Consensus 250 ~d~~G~TpL~ 259 (513)
+|+.-.+|+|
T Consensus 287 Q~~~~~~~~~ 296 (296)
T KOG0502|consen 287 QDSEKRTPLH 296 (296)
T ss_pred hcccCCCCCC
Confidence 8877777764
No 51
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.88 E-value=1.5e-22 Score=227.15 Aligned_cols=197 Identities=24% Similarity=0.282 Sum_probs=150.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCChHHH-HHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHH
Q 010335 44 GLNSPLHFAAAKGHNEIVALLLEN--GADVNSRNYCGQTALM-QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120 (513)
Q Consensus 44 ~g~TpLh~Aa~~g~~eivk~LL~~--Gadvn~~d~~g~TpLh-~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~ 120 (513)
.++..|+.|+..|+.+.|+.+++. +.++|..|..|.|||| .|+.+++.+++++|+++|+ .+ ..|.||||.|+
T Consensus 16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~-~~G~T~Lh~A~ 90 (743)
T TIGR00870 16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RG-AVGDTLLHAIS 90 (743)
T ss_pred HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CC-CcChHHHHHHH
Confidence 347999999999999999999999 8999999999999999 8999999999999999987 23 37999999998
Q ss_pred HcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 200 (513)
Q Consensus 121 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~ 200 (513)
.. ..+.++.++............ . .............|.||||+|+.+|+.++|++|+++
T Consensus 91 ~~-~~~~v~~ll~~l~~~~~~~~~-------------~------~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~ 150 (743)
T TIGR00870 91 LE-YVDAVEAILLHLLAAFRKSGP-------------L------ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER 150 (743)
T ss_pred hc-cHHHHHHHHHHHhhcccccCc-------------h------hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhC
Confidence 73 333343333221110000000 0 000000112235699999999999999999999999
Q ss_pred CCCcccccccC----CccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Q 010335 201 HANVSAVTFHY----GTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265 (513)
Q Consensus 201 Gadvn~~~~~~----~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g 265 (513)
|++++...... ....+....|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..+
T Consensus 151 GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~ 219 (743)
T TIGR00870 151 GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN 219 (743)
T ss_pred CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence 99999654321 011122235899999999999999999999999999999999999999999987
No 52
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-22 Score=194.71 Aligned_cols=159 Identities=31% Similarity=0.411 Sum_probs=140.1
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHcC-----CHHHHHHHHhcCCCCCcccCCCCCc
Q 010335 41 TFGGLNSPLHFAAAKGHNEIVALLLENG-ADVNSRNYCGQTALMQACRYG-----HWEVVQTLLLFRCNVTRADYLSGRT 114 (513)
Q Consensus 41 ~~~~g~TpLh~Aa~~g~~eivk~LL~~G-advn~~d~~g~TpLh~A~~~g-----~~eiVk~LL~~ga~~~~~~~~~G~T 114 (513)
.+++|+|+||||+..+++++|+.||+.| .++|.+|.-|.||+|+|+... +.++|..|.+.| |+|.+....|+|
T Consensus 264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQT 342 (452)
T KOG0514|consen 264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQT 342 (452)
T ss_pred hcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcch
Confidence 3556699999999999999999999998 689999999999999998743 678898888876 677777678999
Q ss_pred HHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHH
Q 010335 115 ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 194 (513)
Q Consensus 115 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv 194 (513)
+|++|+.+|..++|+.||+-+++ +|.+|++|-|+||.|+.+||.+||
T Consensus 343 ALMLAVSHGr~d~vk~LLacgAd---------------------------------VNiQDdDGSTALMCA~EHGhkEiv 389 (452)
T KOG0514|consen 343 ALMLAVSHGRVDMVKALLACGAD---------------------------------VNIQDDDGSTALMCAAEHGHKEIV 389 (452)
T ss_pred hhhhhhhcCcHHHHHHHHHccCC---------------------------------CccccCCccHHHhhhhhhChHHHH
Confidence 99999999999999999987765 899999999999999999999999
Q ss_pred HHHHHc-CCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335 195 QLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243 (513)
Q Consensus 195 ~~Ll~~-Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~ 243 (513)
++||.. +.|+...|.+ |.|+|.+|...|+-+|.-+|..+
T Consensus 390 klLLA~p~cd~sLtD~D----------gSTAl~IAleagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 390 KLLLAVPSCDISLTDVD----------GSTALSIALEAGHREIAVMLYAH 429 (452)
T ss_pred HHHhccCcccceeecCC----------CchhhhhHHhcCchHHHHHHHHH
Confidence 999964 6677777766 99999999999999999888764
No 53
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.88 E-value=1.2e-22 Score=195.67 Aligned_cols=162 Identities=28% Similarity=0.272 Sum_probs=141.7
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCC-CCCcccCCCCCcHHHHHHHc-----CCHHHHHHHHHccCCCCccccc
Q 010335 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRC-NVTRADYLSGRTALHFAAVN-----GHVRCIRLVVADFVPSVPFEVM 144 (513)
Q Consensus 71 vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga-~~~~~~~~~G~TpLh~A~~~-----g~~~iv~~Ll~~~~~~~~~~~~ 144 (513)
||..|.+|+|+||||+.++++++|+.||+.|. +++..+ .-|+||+++|+.. .+.++|..|+.-+.
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qN-rAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-------- 331 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQN-RAGYTPVMLAALAKLKQPADRTVVERLFKMGD-------- 331 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccc-cccccHHHHHHHHhhcchhhHHHHHHHHhccC--------
Confidence 68899999999999999999999999999875 566555 4999999999864 36777777775432
Q ss_pred hhhhcccCCCCchhhhhhchhHHHHhccccc-CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCc
Q 010335 145 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223 (513)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d-~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~T 223 (513)
+|.+. ..|+|+||+|+.+|+.++|+.||.-|||+|..|.+ |.|
T Consensus 332 --------------------------VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdD----------GST 375 (452)
T KOG0514|consen 332 --------------------------VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDD----------GST 375 (452)
T ss_pred --------------------------cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCC----------ccH
Confidence 44433 46999999999999999999999999999999977 999
Q ss_pred hhHHHhhCCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC
Q 010335 224 PLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS 277 (513)
Q Consensus 224 pLh~Aa~~g~~eivk~LL~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~ 277 (513)
+|+.|+++||.|+|++||.. +.|....|.+|-|+|.+|...||.+|.-+|..+-
T Consensus 376 ALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~ 430 (452)
T KOG0514|consen 376 ALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHM 430 (452)
T ss_pred HHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence 99999999999999999986 8899999999999999999999999988876543
No 54
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.87 E-value=1.7e-21 Score=178.04 Aligned_cols=144 Identities=23% Similarity=0.246 Sum_probs=85.0
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCH----HHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHH---HHHHHHccCCCCc
Q 010335 68 GADVNSRNYCGQTALMQACRYGHW----EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC---IRLVVADFVPSVP 140 (513)
Q Consensus 68 Gadvn~~d~~g~TpLh~A~~~g~~----eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~i---v~~Ll~~~~~~~~ 140 (513)
|+|++..+.++.++||.|++.|+. +++++|++.|+.++..+. .|+||||+|+..|+.+. +++|+..+..
T Consensus 10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~-~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad--- 85 (166)
T PHA02743 10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDH-HGRQCTHMVAWYDRANAVMKIELLVNMGAD--- 85 (166)
T ss_pred chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC-CCCcHHHHHHHhCccCHHHHHHHHHHcCCC---
Confidence 444444555555555555555554 344445555555554443 55555555555554332 4555544332
Q ss_pred cccchhhhcccCCCCchhhhhhchhHHHHhccccc-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccCCcccccc
Q 010335 141 FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSMDLI 218 (513)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d-~~G~TpLh~Aa~~g~~eiv~~Ll~-~Gadvn~~~~~~~~~~~~~ 218 (513)
++.++ ..|.||||+|+..|+.+++++|++ .|++++..+..
T Consensus 86 ------------------------------in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~-------- 127 (166)
T PHA02743 86 ------------------------------INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQ-------- 127 (166)
T ss_pred ------------------------------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCC--------
Confidence 34444 356666666666667777777764 57777766654
Q ss_pred CCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCC
Q 010335 219 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW 255 (513)
Q Consensus 219 ~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~ 255 (513)
|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus 128 --g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~ 162 (166)
T PHA02743 128 --HETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL 162 (166)
T ss_pred --CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence 77777777777777777777777777777666653
No 55
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.85 E-value=1.7e-20 Score=171.57 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=117.6
Q ss_pred CCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHH---HHHHHhcCCCCCcccCCCCCcHHH
Q 010335 45 LNSPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQTALMQACRYGHWEV---VQTLLLFRCNVTRADYLSGRTALH 117 (513)
Q Consensus 45 g~TpLh~Aa~~g~~----eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~ei---Vk~LL~~ga~~~~~~~~~G~TpLh 117 (513)
+.++||+|+..|++ +++++|++.|++++.+|..|+||||+|+.+|+.++ +++|+.+|++++..+...|.||||
T Consensus 20 ~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh 99 (166)
T PHA02743 20 EQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLH 99 (166)
T ss_pred CCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHH
Confidence 37899999999998 67778889999999999999999999999988654 899999999999887447999999
Q ss_pred HHHHcCCHHHHHHHHH-ccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHH
Q 010335 118 FAAVNGHVRCIRLVVA-DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQL 196 (513)
Q Consensus 118 ~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~ 196 (513)
+|+..|+.+++++|+. .+.. ++..+..|.||||+|+..++.+++++
T Consensus 100 ~A~~~g~~~iv~~Ll~~~gad---------------------------------~~~~d~~g~tpL~~A~~~~~~~iv~~ 146 (166)
T PHA02743 100 IAASTKNYELAEWLCRQLGVN---------------------------------LGAINYQHETAYHIAYKMRDRRMMEI 146 (166)
T ss_pred HHHHhCCHHHHHHHHhccCCC---------------------------------ccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 9999999999999985 4432 56778889999999999999999999
Q ss_pred HHHcCCCccccccc
Q 010335 197 LLDLHANVSAVTFH 210 (513)
Q Consensus 197 Ll~~Gadvn~~~~~ 210 (513)
|+++|++++..+..
T Consensus 147 Ll~~ga~~~~~~~~ 160 (166)
T PHA02743 147 LRANGAVCDDPLSI 160 (166)
T ss_pred HHHcCCCCCCcccC
Confidence 99999999988855
No 56
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.85 E-value=2.2e-20 Score=184.43 Aligned_cols=149 Identities=15% Similarity=0.172 Sum_probs=127.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCCCC----CCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHH
Q 010335 46 NSPLHFAAAKGHNEIVALLLENGADVNSRN----YCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV 121 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d----~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~ 121 (513)
.++||.|+..|+.+++++|+++|+|+|.++ ..|.||||+|+..|+.+++++|+++|++++..++..|.||||+|+.
T Consensus 34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~ 113 (300)
T PHA02884 34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVL 113 (300)
T ss_pred CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHH
Confidence 677888888899999999999999999874 5899999999999999999999999999998654479999999999
Q ss_pred cCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 010335 122 NGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201 (513)
Q Consensus 122 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G 201 (513)
.|+.+++++|++.+++ ++.+|..|.||||+|+..++.+++..+. |
T Consensus 114 ~~~~eivklLL~~GAd---------------------------------in~kd~~G~TpL~~A~~~~~~~~~~~~~--~ 158 (300)
T PHA02884 114 HGCLKCLEILLSYGAD---------------------------------INIQTNDMVTPIELALMICNNFLAFMIC--D 158 (300)
T ss_pred cCCHHHHHHHHHCCCC---------------------------------CCCCCCCCCCHHHHHHHhCChhHHHHhc--C
Confidence 9999999999988765 6778889999999999999988876665 3
Q ss_pred CCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCC
Q 010335 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245 (513)
Q Consensus 202 advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Ga 245 (513)
... +.. +.+|++++ ++.+++++|+++++
T Consensus 159 ~~~---~~~----------~~~~~~~~---~n~ei~~~Lish~v 186 (300)
T PHA02884 159 NEI---SNF----------YKHPKKIL---INFDILKILVSHFI 186 (300)
T ss_pred Ccc---ccc----------ccChhhhh---ccHHHHHHHHHHHH
Confidence 322 222 66788875 47899999999877
No 57
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=8.5e-21 Score=191.91 Aligned_cols=208 Identities=30% Similarity=0.355 Sum_probs=157.0
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHH
Q 010335 48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127 (513)
Q Consensus 48 pLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~i 127 (513)
.+.-|+..|..+-|+.||..|+++|..|.+|.|+||.++...+.+||++|+++|++++..++ .|+||||.|+..|+..+
T Consensus 43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~-e~wtPlhaaascg~~~i 121 (527)
T KOG0505|consen 43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDN-EGWTPLHAAASCGYLNI 121 (527)
T ss_pred HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccccc-ccCCcchhhcccccHHH
Confidence 45667789999999999999999999999999999999999999999999999999999996 99999999999999999
Q ss_pred HHHHHHccCCCCccccchhhhcccCCCCchhhhhhchh-HHHHhcccccCCCCcHHHHHHHcCC----HHHHHHHHHcCC
Q 010335 128 IRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS-ALSKFVNKAADGGITALHMAALNGY----FDCVQLLLDLHA 202 (513)
Q Consensus 128 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~d~~G~TpLh~Aa~~g~----~eiv~~Ll~~Ga 202 (513)
+++|+..++...... .....+....... .........+..|.+ .-|++.-- ++-++..+..|.
T Consensus 122 ~~~li~~gA~~~avN----------sdg~~P~dl~e~ea~~~~l~~~~~r~gi~--iea~R~~~e~~ml~D~~q~l~~G~ 189 (527)
T KOG0505|consen 122 VEYLIQHGANLLAVN----------SDGNMPYDLAEDEATLDVLETEMARQGID--IEAARKAEEQTMLDDARQWLNAGA 189 (527)
T ss_pred HHHHHHhhhhhhhcc----------CCCCCccccccCcchhHHHHHHHHHhccc--HHHHhhhhHHHHHHHHHHHHhccc
Confidence 999998876432111 0111110000000 000011112222333 11222111 112233344788
Q ss_pred CcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335 203 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278 (513)
Q Consensus 203 dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~ 278 (513)
+.+..+.. |.|.||+|+.+|..++.++||+.|.+++.+|.+||||||.|+.||..++.++|..++.
T Consensus 190 ~~d~~~~r----------G~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga 255 (527)
T KOG0505|consen 190 ELDARHAR----------GATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGA 255 (527)
T ss_pred cccccccc----------cchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhc
Confidence 88888766 9999999999999999999999999999999999999999999999999888876543
No 58
>PHA02741 hypothetical protein; Provisional
Probab=99.83 E-value=6.9e-20 Score=168.06 Aligned_cols=24 Identities=21% Similarity=0.515 Sum_probs=10.4
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHH
Q 010335 74 RNYCGQTALMQACRYGHWEVVQTL 97 (513)
Q Consensus 74 ~d~~g~TpLh~A~~~g~~eiVk~L 97 (513)
+|..|.||||+|+..|+.++|++|
T Consensus 17 ~~~~g~t~Lh~Aa~~g~~~~v~~l 40 (169)
T PHA02741 17 KNSEGENFFHEAARCGCFDIIARF 40 (169)
T ss_pred cccCCCCHHHHHHHcCCHHHHHHH
Confidence 333444444444444444444443
No 59
>PHA02741 hypothetical protein; Provisional
Probab=99.83 E-value=8.1e-20 Score=167.62 Aligned_cols=129 Identities=20% Similarity=0.237 Sum_probs=113.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCChHHHHHHHcCC----HHHHHHHHhcCCCCCcccCCCCC
Q 010335 44 GLNSPLHFAAAKGHNEIVALLLE------NGADVNSRNYCGQTALMQACRYGH----WEVVQTLLLFRCNVTRADYLSGR 113 (513)
Q Consensus 44 ~g~TpLh~Aa~~g~~eivk~LL~------~Gadvn~~d~~g~TpLh~A~~~g~----~eiVk~LL~~ga~~~~~~~~~G~ 113 (513)
.|.||||+|+..|+.++|++|+. .|++++.+|..|.||||+|+..|+ .+++++|+++|++++..+...|.
T Consensus 20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~ 99 (169)
T PHA02741 20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGD 99 (169)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCC
Confidence 34899999999999999999864 368899999999999999999998 58999999999999987644899
Q ss_pred cHHHHHHHcCCHHHHHHHHHc-cCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHH
Q 010335 114 TALHFAAVNGHVRCIRLVVAD-FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 192 (513)
Q Consensus 114 TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~e 192 (513)
||||+|+..++.+++++|+.. +.. ++..|..|+||||+|+..++.+
T Consensus 100 TpLh~A~~~~~~~iv~~Ll~~~g~~---------------------------------~~~~n~~g~tpL~~A~~~~~~~ 146 (169)
T PHA02741 100 TALHLAAHRRDHDLAEWLCCQPGID---------------------------------LHFCNADNKSPFELAIDNEDVA 146 (169)
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCC---------------------------------CCcCCCCCCCHHHHHHHCCCHH
Confidence 999999999999999999963 332 5677888999999999999999
Q ss_pred HHHHHHHcCCCcc
Q 010335 193 CVQLLLDLHANVS 205 (513)
Q Consensus 193 iv~~Ll~~Gadvn 205 (513)
++++|++.++...
T Consensus 147 iv~~L~~~~~~~~ 159 (169)
T PHA02741 147 MMQILREIVATSR 159 (169)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999876544
No 60
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.83 E-value=1.7e-19 Score=178.26 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=129.2
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccC--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCChHHHHHH
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYST--FGGLNSPLHFAAAKGHNEIVALLLENGADVNSR-NYCGQTALMQAC 86 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~--~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~-d~~g~TpLh~A~ 86 (513)
...+|+.|++.|+.+++++|+++|++++.... ...|.||||+|+..|+.+++++|+++|+|+|.+ +..|.||||+|+
T Consensus 33 ~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa 112 (300)
T PHA02884 33 IANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISV 112 (300)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHH
Confidence 45789999999999999999999999876532 234599999999999999999999999999986 568999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335 87 RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166 (513)
Q Consensus 87 ~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (513)
..|+.+++++|+.+|++++..+. .|.||||+|+..++.+++.++...
T Consensus 113 ~~~~~eivklLL~~GAdin~kd~-~G~TpL~~A~~~~~~~~~~~~~~~-------------------------------- 159 (300)
T PHA02884 113 LHGCLKCLEILLSYGADINIQTN-DMVTPIELALMICNNFLAFMICDN-------------------------------- 159 (300)
T ss_pred HcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHhCChhHHHHhcCC--------------------------------
Confidence 99999999999999999999886 899999999999988877555421
Q ss_pred HHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 010335 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 202 (513)
Q Consensus 167 ~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Ga 202 (513)
..+..+.+|++++ ++.+++++|+.++.
T Consensus 160 ------~~~~~~~~~~~~~---~n~ei~~~Lish~v 186 (300)
T PHA02884 160 ------EISNFYKHPKKIL---INFDILKILVSHFI 186 (300)
T ss_pred ------cccccccChhhhh---ccHHHHHHHHHHHH
Confidence 1244566777765 46899999999887
No 61
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.82 E-value=1.1e-20 Score=201.75 Aligned_cols=229 Identities=25% Similarity=0.251 Sum_probs=187.0
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCChHHHHHHHc
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR-NYCGQTALMQACRY 88 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~-d~~g~TpLh~A~~~ 88 (513)
-.++|-.|++.|+.|++.+|+.+|.++...+..+ -+||.+|+..||..+|+.|+++.++++.+ |..+.|+|-+||..
T Consensus 757 ~~t~LT~acaggh~e~vellv~rganiehrdkkg--f~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg 834 (2131)
T KOG4369|consen 757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKG--FVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG 834 (2131)
T ss_pred ccccccccccCccHHHHHHHHHhccccccccccc--chhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence 3467999999999999999999999998766655 89999999999999999999999999874 77899999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335 89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168 (513)
Q Consensus 89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
|+.++|++||..|++-..++ ...+|||.+|...|.+++|++|+..|....
T Consensus 835 gr~~vvelLl~~gankehrn-vsDytPlsla~Sggy~~iI~~llS~GseIn----------------------------- 884 (2131)
T KOG4369|consen 835 GRTRVVELLLNAGANKEHRN-VSDYTPLSLARSGGYTKIIHALLSSGSEIN----------------------------- 884 (2131)
T ss_pred CcchHHHHHHHhhccccccc-hhhcCchhhhcCcchHHHHHHHhhcccccc-----------------------------
Confidence 99999999999999977666 478999999999999999999998774311
Q ss_pred HhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCC
Q 010335 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 248 (513)
Q Consensus 169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~ 248 (513)
-....+.|..||++|+.+||-+.++.||+.|.|+|..-.- +.+|+|-+|+-.|..++|.+||++.+++.
T Consensus 885 --SrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeT---------NrnTaltla~fqgr~evv~lLLa~~anve 953 (2131)
T KOG4369|consen 885 --SRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIET---------NRNTALTLALFQGRPEVVFLLLAAQANVE 953 (2131)
T ss_pred --cccccccCcchhhhhhhccccHHHHHHhcccchhcccccc---------ccccceeeccccCcchHHHHHHHHhhhhh
Confidence 1122345778888888888888888888888888765432 36778888888888888888888888888
Q ss_pred CcCCCCCcHHHHHHHcCccchhhhcCC-CCCCCC
Q 010335 249 SLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVM 281 (513)
Q Consensus 249 ~~d~~G~TpL~~A~~~g~~~iv~lL~~-~~~~~~ 281 (513)
.+-..|.|||+-++..|..++-.+|+. +++.+.
T Consensus 954 hRaktgltplme~AsgGyvdvg~~li~~gad~na 987 (2131)
T KOG4369|consen 954 HRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNA 987 (2131)
T ss_pred hhcccCCcccchhhcCCccccchhhhhccccccc
Confidence 888888888888888888777665554 444443
No 62
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.81 E-value=2.9e-20 Score=198.61 Aligned_cols=255 Identities=24% Similarity=0.197 Sum_probs=191.0
Q ss_pred CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335 9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY 88 (513)
Q Consensus 9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~ 88 (513)
.+-.+|+.|+--||+.+|+.||++.+++....+.. +.|+|-+|+..|..++|++||..|++-..++-...|||-+|...
T Consensus 789 kgf~plImaatagh~tvV~~llk~ha~veaQsdrt-kdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sg 867 (2131)
T KOG4369|consen 789 KGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRT-KDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSG 867 (2131)
T ss_pred ccchhhhhhcccCchHHHHHHHhhhhhhhhhcccc-cCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCc
Confidence 45578999999999999999999999997765544 48999999999999999999999999888998999999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccc----hhhhcccCCCCchhhhhhc
Q 010335 89 GHWEVVQTLLLFRCNVTRADY-LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM----NTQIEGDRGDGSSVKSKCD 163 (513)
Q Consensus 89 g~~eiVk~LL~~ga~~~~~~~-~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 163 (513)
|..++|+.|+.+|++++.+.. +.|-.||++|..+||...++.|++.+.+.+..... .+.+....+..+....
T Consensus 868 gy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~l--- 944 (2131)
T KOG4369|consen 868 GYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFL--- 944 (2131)
T ss_pred chHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHH---
Confidence 999999999999998886543 46899999999999999999999877654432221 1122222222222222
Q ss_pred hhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243 (513)
Q Consensus 164 ~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~ 243 (513)
.......+..+...|.|||+-+|..|.+++-++||..|+|+|..-.. ....|+|-+++..||...|..|+..
T Consensus 945 LLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp--------~T~dtalti~a~kGh~kfv~~lln~ 1016 (2131)
T KOG4369|consen 945 LLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVP--------NTWDTALTIPANKGHTKFVPKLLNG 1016 (2131)
T ss_pred HHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCC--------CcCCccceeecCCCchhhhHHhhCC
Confidence 22233446677888999999999999999999999999999876533 1244556666666666666666655
Q ss_pred CCCCCCcCCCCCcHHHHHHHcCccchhhhcCC
Q 010335 244 GASRMSLNCNGWLPLDVARMWGRHWLEPLLAP 275 (513)
Q Consensus 244 Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~ 275 (513)
.|.+..+|++|.|+|.+|+..|+...+++|..
T Consensus 1017 ~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~ 1048 (2131)
T KOG4369|consen 1017 DATVRVPNKKGCTVLWLASAGGALSSCPILVS 1048 (2131)
T ss_pred ccceecccCCCCcccchhccCCccccchHHhh
Confidence 55555556666666666665555555554443
No 63
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.80 E-value=1.4e-19 Score=163.38 Aligned_cols=132 Identities=18% Similarity=0.224 Sum_probs=105.6
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCC-------CcccCCCCCcHHHHHHHcCCHH---HHHHHHHccCCCCc
Q 010335 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV-------TRADYLSGRTALHFAAVNGHVR---CIRLVVADFVPSVP 140 (513)
Q Consensus 71 vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~-------~~~~~~~G~TpLh~A~~~g~~~---iv~~Ll~~~~~~~~ 140 (513)
++.+|..|.||||+|+..|+. +++|+..+... ...+ ..|.||||+|+..|+.+ ++++|++.+..
T Consensus 10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d-~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad--- 83 (154)
T PHA02736 10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYN-RHGKQCVHIVSNPDKADPQEKLKLLMEWGAD--- 83 (154)
T ss_pred HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhc-CCCCEEEEeecccCchhHHHHHHHHHHcCCC---
Confidence 356677889999999998873 33333332211 1223 47999999999998864 57888877653
Q ss_pred cccchhhhcccCCCCchhhhhhchhHHHHhccccc-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccCCcccccc
Q 010335 141 FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSMDLI 218 (513)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d-~~G~TpLh~Aa~~g~~eiv~~Ll~-~Gadvn~~~~~~~~~~~~~ 218 (513)
++.++ ..|+||||+|+..|+.+++++|++ .|++++..+..
T Consensus 84 ------------------------------in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~-------- 125 (154)
T PHA02736 84 ------------------------------INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYA-------- 125 (154)
T ss_pred ------------------------------ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCC--------
Confidence 66676 489999999999999999999998 59999998876
Q ss_pred CCCCchhHHHhhCCCHHHHHHHHHCCCCCC
Q 010335 219 GAGSTPLHFAACGGNLKCCQVLLSRGASRM 248 (513)
Q Consensus 219 ~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~ 248 (513)
|.||||+|+..|+.+++++|+++|++.+
T Consensus 126 --g~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 126 --FKTPYYVACERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred --CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999865
No 64
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.79 E-value=3.3e-19 Score=160.98 Aligned_cols=128 Identities=17% Similarity=0.118 Sum_probs=103.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCC--C-----CCCCCCCCChHHHHHHHcCCH---HHHHHHHhcCCCCCcccCCCC
Q 010335 43 GGLNSPLHFAAAKGHNEIVALLLENGA--D-----VNSRNYCGQTALMQACRYGHW---EVVQTLLLFRCNVTRADYLSG 112 (513)
Q Consensus 43 ~~g~TpLh~Aa~~g~~eivk~LL~~Ga--d-----vn~~d~~g~TpLh~A~~~g~~---eiVk~LL~~ga~~~~~~~~~G 112 (513)
..|.||||+|+..|+. +++|+..+. + ++.+|..|.||||+|+..|+. +++++|+++|++++..++..|
T Consensus 15 ~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g 92 (154)
T PHA02736 15 IEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFG 92 (154)
T ss_pred CCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCC
Confidence 3458999999999984 344333222 2 335688899999999999986 468899999999998875589
Q ss_pred CcHHHHHHHcCCHHHHHHHHHc-cCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCH
Q 010335 113 RTALHFAAVNGHVRCIRLVVAD-FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 191 (513)
Q Consensus 113 ~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~ 191 (513)
.||||+|+..|+.+++++|+.. +.. ++..+..|.||||+|+..|+.
T Consensus 93 ~T~Lh~A~~~~~~~i~~~Ll~~~g~d---------------------------------~n~~~~~g~tpL~~A~~~~~~ 139 (154)
T PHA02736 93 NTPLHIAVYTQNYELATWLCNQPGVN---------------------------------MEILNYAFKTPYYVACERHDA 139 (154)
T ss_pred CcHHHHHHHhCCHHHHHHHHhCCCCC---------------------------------CccccCCCCCHHHHHHHcCCH
Confidence 9999999999999999999863 332 567788899999999999999
Q ss_pred HHHHHHHHcCCCcc
Q 010335 192 DCVQLLLDLHANVS 205 (513)
Q Consensus 192 eiv~~Ll~~Gadvn 205 (513)
+++++|+++|++.+
T Consensus 140 ~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 140 KMMNILRAKGAQCK 153 (154)
T ss_pred HHHHHHHHcCCCCC
Confidence 99999999998865
No 65
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.76 E-value=7.2e-18 Score=147.27 Aligned_cols=81 Identities=32% Similarity=0.256 Sum_probs=39.8
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHH-HHHHHH-HCCCCCCCcC
Q 010335 174 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK-CCQVLL-SRGASRMSLN 251 (513)
Q Consensus 174 ~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~e-ivk~LL-~~Gad~~~~d 251 (513)
+...||||||.|+.-++.+++-+||++|+|+|+.... ..||||+|+...+.. .+.+|+ +++.++..++
T Consensus 126 ~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g----------~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~n 195 (228)
T KOG0512|consen 126 KTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKG----------LLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKN 195 (228)
T ss_pred ccccCccchhhhhcccchhHHHHHHhccCcccccccc----------cchhhHHhhcccchHHHHHHHhhccccChhhhc
Confidence 3344555555555555555555555555555555533 455555555544332 233322 3344555555
Q ss_pred CCCCcHHHHHHHc
Q 010335 252 CNGWLPLDVARMW 264 (513)
Q Consensus 252 ~~G~TpL~~A~~~ 264 (513)
..+.||+++|.+.
T Consensus 196 n~eeta~~iARRT 208 (228)
T KOG0512|consen 196 NLEETAFDIARRT 208 (228)
T ss_pred CccchHHHHHHHh
Confidence 5555555555544
No 66
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.75 E-value=1.1e-17 Score=136.28 Aligned_cols=88 Identities=42% Similarity=0.545 Sum_probs=80.8
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHH
Q 010335 14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEV 93 (513)
Q Consensus 14 L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~ei 93 (513)
||.|++.|+++++++|++.+.++.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 74 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEI 74 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHH
Confidence 7999999999999999999877765 4899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcc
Q 010335 94 VQTLLLFRCNVTRA 107 (513)
Q Consensus 94 Vk~LL~~ga~~~~~ 107 (513)
+++|+++|++++.+
T Consensus 75 ~~~Ll~~g~~~~~~ 88 (89)
T PF12796_consen 75 VKLLLEHGADVNIR 88 (89)
T ss_dssp HHHHHHTTT-TTSS
T ss_pred HHHHHHcCCCCCCc
Confidence 99999999998865
No 67
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.74 E-value=3e-17 Score=143.43 Aligned_cols=146 Identities=28% Similarity=0.302 Sum_probs=121.9
Q ss_pred cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH 90 (513)
Q Consensus 11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~ 90 (513)
...+.+|+..+.+..|+.||+..++.....+ ..+.||||-|+.+||++||+.|+.+|++++.+...|+||||-||+-++
T Consensus 64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD-~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN 142 (228)
T KOG0512|consen 64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRD-EDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN 142 (228)
T ss_pred HHHHHHHHhhccHHHHHHHHHhccccccccc-cccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc
Confidence 3568899999999999999999888765433 334999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHH-HHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335 91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR-CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK 169 (513)
Q Consensus 91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~-iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
.+++-+||++|++++...+ ...||||+|+...+.. .+.+|+.+...
T Consensus 143 ~~va~~LLqhgaDVnA~t~-g~ltpLhlaa~~rn~r~t~~~Ll~dryi-------------------------------- 189 (228)
T KOG0512|consen 143 FEVAGRLLQHGADVNAQTK-GLLTPLHLAAGNRNSRDTLELLLHDRYI-------------------------------- 189 (228)
T ss_pred hhHHHHHHhccCccccccc-ccchhhHHhhcccchHHHHHHHhhcccc--------------------------------
Confidence 9999999999999999885 7899999999877655 45555532110
Q ss_pred hcccccCCCCcHHHHHHHcCC
Q 010335 170 FVNKAADGGITALHMAALNGY 190 (513)
Q Consensus 170 ~i~~~d~~G~TpLh~Aa~~g~ 190 (513)
....++..+.||+.+|-+.+-
T Consensus 190 ~pg~~nn~eeta~~iARRT~~ 210 (228)
T KOG0512|consen 190 HPGLKNNLEETAFDIARRTSM 210 (228)
T ss_pred ChhhhcCccchHHHHHHHhhh
Confidence 033455678899999988754
No 68
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.74 E-value=1.1e-17 Score=177.14 Aligned_cols=211 Identities=24% Similarity=0.190 Sum_probs=169.8
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCC---------CCCCCCCCCCChHHHHHHHc---CCHHHHHHHHhcCCC----CCcccC
Q 010335 46 NSPLHFAAAKGHNEIVALLLENG---------ADVNSRNYCGQTALMQACRY---GHWEVVQTLLLFRCN----VTRADY 109 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~G---------advn~~d~~g~TpLh~A~~~---g~~eiVk~LL~~ga~----~~~~~~ 109 (513)
+.++..|...+.++.+..|+..+ .+++.+...|.|.||.|..+ ++.++++.|++.-.. +...+.
T Consensus 102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee 181 (782)
T KOG3676|consen 102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE 181 (782)
T ss_pred hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence 36788899999999998888766 67888888999999999874 466899999986433 334444
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcC
Q 010335 110 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 189 (513)
Q Consensus 110 ~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g 189 (513)
..|+||||+|+.+.+.++|++|++.+++.........+...+........ ...-.--.|..||.+||.-+
T Consensus 182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T----------~Y~G~~YfGEyPLSfAAC~n 251 (782)
T KOG3676|consen 182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKST----------NYTGYFYFGEYPLSFAACTN 251 (782)
T ss_pred hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCccccccccccc----------CCcceeeeccCchHHHHHcC
Confidence 58999999999999999999999998876554444333322221111000 00011225889999999999
Q ss_pred CHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC--CCCcCCCCCcHHHHHHHcCcc
Q 010335 190 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS--RMSLNCNGWLPLDVARMWGRH 267 (513)
Q Consensus 190 ~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad--~~~~d~~G~TpL~~A~~~g~~ 267 (513)
+.+++++|+++|||++++|.+ |+|.||..+..-..++-.+++++|++ ...+|++|.|||.+|++-|+.
T Consensus 252 q~eivrlLl~~gAd~~aqDS~----------GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~ 321 (782)
T KOG3676|consen 252 QPEIVRLLLAHGADPNAQDSN----------GNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKK 321 (782)
T ss_pred CHHHHHHHHhcCCCCCccccC----------CChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhH
Confidence 999999999999999999988 99999999999999999999999999 889999999999999999999
Q ss_pred chhhhcCCC
Q 010335 268 WLEPLLAPS 276 (513)
Q Consensus 268 ~iv~lL~~~ 276 (513)
+|.+.+.+.
T Consensus 322 emf~~ile~ 330 (782)
T KOG3676|consen 322 EMFQHILER 330 (782)
T ss_pred HHHHHHHHh
Confidence 998877766
No 69
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.72 E-value=1e-17 Score=157.13 Aligned_cols=74 Identities=45% Similarity=0.514 Sum_probs=43.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcH
Q 010335 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 257 (513)
Q Consensus 178 G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~Tp 257 (513)
..||||+|+.+||.++|+.|++..+|+|+.+.+ |+||||||+..|...+.+-|+..||.+++-|+.|.||
T Consensus 67 ddtplhlaaahghrdivqkll~~kadvnavneh----------gntplhyacfwgydqiaedli~~ga~v~icnk~g~tp 136 (448)
T KOG0195|consen 67 DDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEH----------GNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTP 136 (448)
T ss_pred CCcchhhhhhcccHHHHHHHHHHhcccchhhcc----------CCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCc
Confidence 345555555555555555555555566655554 5566666666666566666666666665556666665
Q ss_pred HHHH
Q 010335 258 LDVA 261 (513)
Q Consensus 258 L~~A 261 (513)
|+.|
T Consensus 137 ldka 140 (448)
T KOG0195|consen 137 LDKA 140 (448)
T ss_pred hhhh
Confidence 5544
No 70
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.68 E-value=3.1e-16 Score=127.66 Aligned_cols=89 Identities=39% Similarity=0.567 Sum_probs=78.1
Q ss_pred HHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHH
Q 010335 116 LHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ 195 (513)
Q Consensus 116 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~ 195 (513)
||+|+..|+.+++++|++.+.. ++. |.||||+|+.+|+.++++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~---------------------------------~~~----~~~~l~~A~~~~~~~~~~ 43 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGAD---------------------------------INL----GNTALHYAAENGNLEIVK 43 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTST---------------------------------TTS----SSBHHHHHHHTTTHHHHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCC---------------------------------CCC----CCCHHHHHHHcCCHHHHH
Confidence 7999999999999999975432 222 789999999999999999
Q ss_pred HHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcC
Q 010335 196 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN 251 (513)
Q Consensus 196 ~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d 251 (513)
+|++.|++++..+.. |+||||+|+.+|+.+++++|+++|++++.+|
T Consensus 44 ~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 44 LLLENGADINSQDKN----------GNTALHYAAENGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHTTTCTT-BSTT----------SSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred HHHHhcccccccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 999999999999866 9999999999999999999999999999875
No 71
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.67 E-value=5.1e-16 Score=164.59 Aligned_cols=189 Identities=30% Similarity=0.309 Sum_probs=155.6
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCC-------CCccccCCCCCCcHHHHHHH---cCCHHHHHHHHHCCCC-CC---C-CCC
Q 010335 12 ERLVSAARDGDFVEAKMLLDCNP-------CLAKYSTFGGLNSPLHFAAA---KGHNEIVALLLENGAD-VN---S-RNY 76 (513)
Q Consensus 12 ~~L~~Aa~~G~~e~vk~LL~~~~-------~~~~~~~~~~g~TpLh~Aa~---~g~~eivk~LL~~Gad-vn---~-~d~ 76 (513)
++++.|...|.++.+..|+..+- +......-.-|.|.||.|.. .++.++++.|++.-.. +| . -.+
T Consensus 103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY 182 (782)
T KOG3676|consen 103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY 182 (782)
T ss_pred hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence 67888999999999988887652 11111112235999999998 4456999999985321 11 1 236
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCCcccC----------------------CCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335 77 CGQTALMQACRYGHWEVVQTLLLFRCNVTRADY----------------------LSGRTALHFAAVNGHVRCIRLVVAD 134 (513)
Q Consensus 77 ~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~----------------------~~G~TpLh~A~~~g~~~iv~~Ll~~ 134 (513)
.|+||||+|+.+.+.++|++|++.|||++.+-. ..|..||-+|+--++.+++++|+++
T Consensus 183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~ 262 (782)
T KOG3676|consen 183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH 262 (782)
T ss_pred cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence 799999999999999999999999999874321 1488999999999999999999988
Q ss_pred cCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC--cccccccCC
Q 010335 135 FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN--VSAVTFHYG 212 (513)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad--vn~~~~~~~ 212 (513)
+++ ++.+|..|+|.||+.+.+-..++..+++++|++ ....+..
T Consensus 263 gAd---------------------------------~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~q-- 307 (782)
T KOG3676|consen 263 GAD---------------------------------PNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQ-- 307 (782)
T ss_pred CCC---------------------------------CCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccC--
Confidence 765 889999999999999999999999999999999 6666655
Q ss_pred ccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335 213 TSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243 (513)
Q Consensus 213 ~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~ 243 (513)
|-|||.+|++.|..++.+.+++.
T Consensus 308 --------gLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 308 --------GLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred --------CCChHHHHHHhhhHHHHHHHHHh
Confidence 99999999999999999999987
No 72
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.67 E-value=1.7e-15 Score=129.85 Aligned_cols=89 Identities=45% Similarity=0.687 Sum_probs=54.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
|.||||+|+..|+.+++++|++.|.+.+..+..|.||||+|+..++.+++++|++++++++..+. .|.||+|+|+..++
T Consensus 7 g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~l~~a~~~~~ 85 (126)
T cd00204 7 GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDK-DGNTPLHLAARNGN 85 (126)
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCc
Confidence 35666666666666666666666666666666666666666666666666666666655544442 55555555555555
Q ss_pred HHHHHHHHHc
Q 010335 125 VRCIRLVVAD 134 (513)
Q Consensus 125 ~~iv~~Ll~~ 134 (513)
.+++++|+..
T Consensus 86 ~~~~~~L~~~ 95 (126)
T cd00204 86 LDVVKLLLKH 95 (126)
T ss_pred HHHHHHHHHc
Confidence 5555555543
No 73
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.66 E-value=5.3e-16 Score=121.70 Aligned_cols=104 Identities=24% Similarity=0.377 Sum_probs=92.6
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH
Q 010335 12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHW 91 (513)
Q Consensus 12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~ 91 (513)
..+.+++++|.++.|+.....|-+++.. . +|++|||||+..|+++++++|+..|++++.+|++|.|||.-|++.||.
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~--~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~ 80 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI--Y-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHR 80 (117)
T ss_pred hhHhhhhccCcHHHHHHHHHccccHHHH--h-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhH
Confidence 5689999999999999999999666543 2 559999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcccCCCCCcHHHHH
Q 010335 92 EVVQTLLLFRCNVTRADYLSGRTALHFA 119 (513)
Q Consensus 92 eiVk~LL~~ga~~~~~~~~~G~TpLh~A 119 (513)
++|++||+.|++-..... +|.+.+..+
T Consensus 81 ~cVklLL~~GAdrt~~~P-dG~~~~eat 107 (117)
T KOG4214|consen 81 DCVKLLLQNGADRTIHAP-DGTALIEAT 107 (117)
T ss_pred HHHHHHHHcCcccceeCC-CchhHHhhc
Confidence 999999999999877664 777666544
No 74
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.66 E-value=1.3e-16 Score=149.75 Aligned_cols=160 Identities=28% Similarity=0.312 Sum_probs=126.3
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHH
Q 010335 14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEV 93 (513)
Q Consensus 14 L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~ei 93 (513)
++.-++.||---|+..|+........ .+..|-+|||+|++.|+..+|+.||.+|+.+|..|.-..||||+|+.+||.++
T Consensus 4 if~wcregna~qvrlwld~tehdln~-gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdi 82 (448)
T KOG0195|consen 4 IFGWCREGNAFQVRLWLDDTEHDLNV-GDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDI 82 (448)
T ss_pred hhhhhhcCCeEEEEEEecCccccccc-ccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHH
Confidence 44556777766677666653332222 33445899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhccc
Q 010335 94 VQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK 173 (513)
Q Consensus 94 Vk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 173 (513)
|+.|+++.++++..+. .|.||||||+.-|...+.+-|++.|+. ++.
T Consensus 83 vqkll~~kadvnavne-hgntplhyacfwgydqiaedli~~ga~---------------------------------v~i 128 (448)
T KOG0195|consen 83 VQKLLSRKADVNAVNE-HGNTPLHYACFWGYDQIAEDLISCGAA---------------------------------VNI 128 (448)
T ss_pred HHHHHHHhcccchhhc-cCCCchhhhhhhcHHHHHHHHHhccce---------------------------------eee
Confidence 9999999999999886 999999999999999999999987754 777
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 010335 174 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVT 208 (513)
Q Consensus 174 ~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~ 208 (513)
-+++|.|||..|--.-..-+.++--++|-++|...
T Consensus 129 cnk~g~tpldkakp~l~~~l~e~aek~gq~~nrip 163 (448)
T KOG0195|consen 129 CNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNRIP 163 (448)
T ss_pred cccCCCCchhhhchHHHHHHHHHHHHhCCCCCccc
Confidence 88899999987743222222233335677776544
No 75
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.65 E-value=3.5e-15 Score=127.90 Aligned_cols=121 Identities=41% Similarity=0.589 Sum_probs=110.0
Q ss_pred CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335 9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY 88 (513)
Q Consensus 9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~ 88 (513)
.+.++|+.|++.|+.+++++|++.+........ .|.||||+|+..++.+++++|++.|++++..+..|.||+|+|+..
T Consensus 6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~--~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~ 83 (126)
T cd00204 6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDN--DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN 83 (126)
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 356889999999999999999999988644333 448999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 010335 89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 132 (513)
Q Consensus 89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll 132 (513)
++.+++++|++.+.+++..+. .|.|||++|+..++.+++++|+
T Consensus 84 ~~~~~~~~L~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 84 GNLDVVKLLLKHGADVNARDK-DGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred CcHHHHHHHHHcCCCCcccCC-CCCCHHHHHHhcCCHHHHHHhC
Confidence 999999999999988888774 8999999999999999999874
No 76
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.57 E-value=3.9e-14 Score=134.23 Aligned_cols=132 Identities=33% Similarity=0.438 Sum_probs=108.9
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC-----HHHHHHHHHccCCCCccccchh
Q 010335 72 NSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH-----VRCIRLVVADFVPSVPFEVMNT 146 (513)
Q Consensus 72 n~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~-----~~iv~~Ll~~~~~~~~~~~~~~ 146 (513)
...+..+.+++|.|+..+..+++++|+..|++++..+. .|.||||+|+..++ .+++++|++.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~--------- 136 (235)
T COG0666 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA-DGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD--------- 136 (235)
T ss_pred ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccC-CCCcHHHHHHhcCCcccchHHHHHHHHHcCCC---------
Confidence 45566678888888888888888888888888866664 88888888888888 8888888877652
Q ss_pred hhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhH
Q 010335 147 QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226 (513)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh 226 (513)
....+..+..|+||||+|+..|+.+++++|++.|++++..+.. |.|+|+
T Consensus 137 ---------------------~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~----------g~t~l~ 185 (235)
T COG0666 137 ---------------------LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSY----------GVTALD 185 (235)
T ss_pred ---------------------CCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccC----------CCcchh
Confidence 0115566888999999999999999999999999999988766 999999
Q ss_pred HHhhCCCHHHHHHHHHCC
Q 010335 227 FAACGGNLKCCQVLLSRG 244 (513)
Q Consensus 227 ~Aa~~g~~eivk~LL~~G 244 (513)
+|+..++.++++.|++.+
T Consensus 186 ~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 186 PAAKNGRIELVKLLLDKG 203 (235)
T ss_pred hhcccchHHHHHHHHhcC
Confidence 999999999999999976
No 77
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.48 E-value=6.6e-13 Score=125.81 Aligned_cols=125 Identities=38% Similarity=0.470 Sum_probs=113.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcC
Q 010335 110 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 189 (513)
Q Consensus 110 ~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g 189 (513)
..+.++++.++..+..+++++|+..+.. ++..+..|.||||+|+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------~~~~~~~g~t~l~~a~~~~ 117 (235)
T COG0666 71 LDGRLPLHSAASKGDDKIVKLLLASGAD---------------------------------VNAKDADGDTPLHLAALNG 117 (235)
T ss_pred ccccCHHHHHHHcCcHHHHHHHHHcCCC---------------------------------cccccCCCCcHHHHHHhcC
Confidence 3689999999999999999999877654 6778899999999999999
Q ss_pred C-----HHHHHHHHHcCC---CcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 010335 190 Y-----FDCVQLLLDLHA---NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261 (513)
Q Consensus 190 ~-----~eiv~~Ll~~Ga---dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A 261 (513)
+ .+++++|++.|+ +.+..+.. |.||||+|+..|+.+++++|++.|++++.++..|.|+++.|
T Consensus 118 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~----------g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a 187 (235)
T COG0666 118 NPPEGNIEVAKLLLEAGADLDVNNLRDED----------GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPA 187 (235)
T ss_pred CcccchHHHHHHHHHcCCCCCCccccCCC----------CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhh
Confidence 9 999999999999 44444655 99999999999999999999999999999999999999999
Q ss_pred HHcCccchhhhcCCCC
Q 010335 262 RMWGRHWLEPLLAPSS 277 (513)
Q Consensus 262 ~~~g~~~iv~lL~~~~ 277 (513)
...++..++.++....
T Consensus 188 ~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 188 AKNGRIELVKLLLDKG 203 (235)
T ss_pred cccchHHHHHHHHhcC
Confidence 9999999988887754
No 78
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.46 E-value=2.6e-13 Score=106.69 Aligned_cols=104 Identities=28% Similarity=0.411 Sum_probs=87.9
Q ss_pred cHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHH
Q 010335 114 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 193 (513)
Q Consensus 114 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~ei 193 (513)
--+.|++++|.++-|+-.+..+.. +|..- .|++|||+|+-.|+.++
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~~g~n---------------------------------Vn~~~-ggR~plhyAAD~GQl~i 49 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVNEGLN---------------------------------VNEIY-GGRTPLHYAADYGQLSI 49 (117)
T ss_pred hhHhhhhccCcHHHHHHHHHcccc---------------------------------HHHHh-CCcccchHhhhcchHHH
Confidence 346788899998888887754421 22222 68999999999999999
Q ss_pred HHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 010335 194 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261 (513)
Q Consensus 194 v~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A 261 (513)
+++|+..|++++.+|+. |-|||.-|+..||.++|++||++|||...+.-+|.+.+..+
T Consensus 50 lefli~iGA~i~~kDKy----------gITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 50 LEFLISIGANIQDKDKY----------GITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT 107 (117)
T ss_pred HHHHHHhccccCCcccc----------CCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence 99999999999999988 99999999999999999999999999999988898776654
No 79
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.43 E-value=2.8e-13 Score=99.39 Aligned_cols=54 Identities=46% Similarity=0.699 Sum_probs=45.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLL 98 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL 98 (513)
|+||||+|+..|+.+++++|+++|+|+|.+|.+|.||||+|+.+|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 489999999999999999999999999999999999999999999999999986
No 80
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.43 E-value=5.1e-13 Score=125.73 Aligned_cols=125 Identities=27% Similarity=0.357 Sum_probs=110.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCH
Q 010335 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 191 (513)
Q Consensus 112 G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~ 191 (513)
-..+|.-++..|..+-...|++. .+.+|..|..|.++|..|+..|+.
T Consensus 12 ~~~~Lle~i~Kndt~~a~~LLs~---------------------------------vr~vn~~D~sGMs~LahAaykGnl 58 (396)
T KOG1710|consen 12 PKSPLLEAIDKNDTEAALALLST---------------------------------VRQVNQRDPSGMSVLAHAAYKGNL 58 (396)
T ss_pred hhhHHHHHHccCcHHHHHHHHHH---------------------------------hhhhhccCCCcccHHHHHHhcCcH
Confidence 35688888888888888888743 223788999999999999999999
Q ss_pred HHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhh
Q 010335 192 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEP 271 (513)
Q Consensus 192 eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~ 271 (513)
++|++||+.|+|+|..... .+.||||+|+.+|+.++.++|++.|+.....|.-|+|+-.+|+.-|+.+.|.
T Consensus 59 ~~v~lll~~gaDvN~~qhg---------~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~ 129 (396)
T KOG1710|consen 59 TLVELLLELGADVNDKQHG---------TLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVA 129 (396)
T ss_pred HHHHHHHHhCCCcCccccc---------ccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHH
Confidence 9999999999999987643 5899999999999999999999999999999999999999999999998888
Q ss_pred hcCCCCC
Q 010335 272 LLAPSSD 278 (513)
Q Consensus 272 lL~~~~~ 278 (513)
++...-.
T Consensus 130 iINN~~t 136 (396)
T KOG1710|consen 130 IINNHIT 136 (396)
T ss_pred HHhcccc
Confidence 7765443
No 81
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=7.2e-13 Score=133.60 Aligned_cols=120 Identities=23% Similarity=0.215 Sum_probs=105.5
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH
Q 010335 12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHW 91 (513)
Q Consensus 12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~ 91 (513)
-.|..|+..|.+|+|+.++..-.+...-++. |-|+||-|+-.||.+||+|||+.|++||..|.+|+||||.|+..++.
T Consensus 552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdE--GITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv 629 (752)
T KOG0515|consen 552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDE--GITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNV 629 (752)
T ss_pred HHHHhhhhcchHHHHHHHHHhhcCCCCCCcc--chhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCch
Confidence 4578899999999999999876555544444 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcccCCCCCcHHHHHH--HcCCHHHHHHHHH
Q 010335 92 EVVQTLLLFRCNVTRADYLSGRTALHFAA--VNGHVRCIRLVVA 133 (513)
Q Consensus 92 eiVk~LL~~ga~~~~~~~~~G~TpLh~A~--~~g~~~iv~~Ll~ 133 (513)
.+++.|++.|+-+......++.|+..-.- ..|..++.++|..
T Consensus 630 ~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 630 PMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG 673 (752)
T ss_pred HHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence 99999999999998877778889887653 4688999999974
No 82
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.39 E-value=2.5e-13 Score=100.34 Aligned_cols=55 Identities=38% Similarity=0.504 Sum_probs=33.1
Q ss_pred HHHcC-CCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 010335 197 LLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261 (513)
Q Consensus 197 Ll~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A 261 (513)
||++| ++++..|.. |.||||+|+.+|+.++|++|+++|++++.+|.+|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~----------G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKY----------GNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TT----------S--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCC----------CCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 67888 899999977 99999999999999999999999999999999999999997
No 83
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.36 E-value=3.1e-12 Score=141.27 Aligned_cols=104 Identities=33% Similarity=0.346 Sum_probs=84.8
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHH
Q 010335 13 RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWE 92 (513)
Q Consensus 13 ~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~e 92 (513)
.|+.|+..|+.+.++.|++.|++++..+.. |+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~--G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~ 162 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTGGADPNCRDYD--GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE 162 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCC--CCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence 478888899999999999888887765443 489999999999999999999999999999988999999999999999
Q ss_pred HHHHHHhc-------CCCCCcccCCCCCcHHHHH
Q 010335 93 VVQTLLLF-------RCNVTRADYLSGRTALHFA 119 (513)
Q Consensus 93 iVk~LL~~-------ga~~~~~~~~~G~TpLh~A 119 (513)
++++|+++ |++.+.... .|.+|+..+
T Consensus 163 iv~~Ll~~~~~~~~~ga~~~~~~~-~g~~~~~~~ 195 (664)
T PTZ00322 163 VVQLLSRHSQCHFELGANAKPDSF-TGKPPSLED 195 (664)
T ss_pred HHHHHHhCCCcccccCCCCCcccc-CCCCccchh
Confidence 99999888 777665553 666665544
No 84
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.35 E-value=4.1e-12 Score=140.30 Aligned_cols=106 Identities=26% Similarity=0.296 Sum_probs=96.5
Q ss_pred cHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHH
Q 010335 114 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 193 (513)
Q Consensus 114 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~ei 193 (513)
+.|+.|+..|+.+.+++|++.+.+ ++..|..|+||||+|+.+|+.++
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gad---------------------------------in~~d~~G~TpLh~Aa~~g~~ei 130 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGAD---------------------------------PNCRDYDGRTPLHIACANGHVQV 130 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCcCCCCCcHHHHHHHCCCHHH
Confidence 458899999999999999987654 67788899999999999999999
Q ss_pred HHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC-------CCCCCCcCCCCCcHHHHHH
Q 010335 194 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-------GASRMSLNCNGWLPLDVAR 262 (513)
Q Consensus 194 v~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~-------Gad~~~~d~~G~TpL~~A~ 262 (513)
|++|+++|++++..+.. |.||||+|+..|+.+++++|+++ |++++..+..|.+|+..+.
T Consensus 131 v~~LL~~Gadvn~~d~~----------G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 131 VRVLLEFGADPTLLDKD----------GKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred HHHHHHCCCCCCCCCCC----------CCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 99999999999999977 99999999999999999999999 9999999998888877654
No 85
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.34 E-value=8e-12 Score=117.76 Aligned_cols=122 Identities=33% Similarity=0.320 Sum_probs=108.2
Q ss_pred CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCChHHHHHHH
Q 010335 9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS-RNYCGQTALMQACR 87 (513)
Q Consensus 9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~-~d~~g~TpLh~A~~ 87 (513)
+...+|+.++-.|+.+.+..||+.-..++..+.. |.|+|..|+.+|++++|++||+.|+|+|. ++..+.||||+|+.
T Consensus 11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~s--GMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL 88 (396)
T KOG1710|consen 11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPS--GMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL 88 (396)
T ss_pred chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCC--cccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence 3457899999999999999999975555554444 49999999999999999999999999986 46788999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 010335 88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA 133 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~ 133 (513)
.|+.++.++|++.|+.....+. -|+|+-..|+.-|+.++|..+-.
T Consensus 89 SGn~dvcrllldaGa~~~~vNs-vgrTAaqmAAFVG~H~CV~iINN 133 (396)
T KOG1710|consen 89 SGNQDVCRLLLDAGARMYLVNS-VGRTAAQMAAFVGHHECVAIINN 133 (396)
T ss_pred cCCchHHHHHHhccCccccccc-hhhhHHHHHHHhcchHHHHHHhc
Confidence 9999999999999999988875 79999999999999999988753
No 86
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.33 E-value=1.4e-12 Score=96.41 Aligned_cols=55 Identities=49% Similarity=0.700 Sum_probs=22.2
Q ss_pred HHHCC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHH
Q 010335 64 LLENG-ADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA 119 (513)
Q Consensus 64 LL~~G-advn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A 119 (513)
||++| ++++.+|..|.||||+|+.+|+.++|++|++.|++++..+. .|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~-~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDK-DGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---T-TS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcC-CCCCHHHhC
Confidence 45555 66666666666666666666666666666666666666664 666666665
No 87
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.32 E-value=3.1e-12 Score=93.80 Aligned_cols=54 Identities=44% Similarity=0.660 Sum_probs=46.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHH
Q 010335 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 241 (513)
Q Consensus 178 G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL 241 (513)
|+||||+|+..|+.+++++|+++|+|++..|.. |.||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~----------g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDED----------GRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TT----------S--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHHccCHHHHHHHC
Confidence 689999999999999999999999999999866 999999999999999999996
No 88
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=1.6e-10 Score=117.00 Aligned_cols=91 Identities=33% Similarity=0.343 Sum_probs=85.2
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCH
Q 010335 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV 125 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~ 125 (513)
.-.|.-|+..|.+|+|+.++..=-|+...|..|.||||-|+-.||.+||+||+++|+++|..|. +||||||.|+..+++
T Consensus 551 LaLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DS-dGWTPLHCAASCNnv 629 (752)
T KOG0515|consen 551 LALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADS-DGWTPLHCAASCNNV 629 (752)
T ss_pred HHHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccC-CCCchhhhhhhcCch
Confidence 3456778999999999999998889999999999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHHccCC
Q 010335 126 RCIRLVVADFVP 137 (513)
Q Consensus 126 ~iv~~Ll~~~~~ 137 (513)
.+++.|++.|..
T Consensus 630 ~~ckqLVe~Gaa 641 (752)
T KOG0515|consen 630 PMCKQLVESGAA 641 (752)
T ss_pred HHHHHHHhccce
Confidence 999999988764
No 89
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.95 E-value=5.5e-10 Score=118.32 Aligned_cols=101 Identities=28% Similarity=0.315 Sum_probs=89.4
Q ss_pred hHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244 (513)
Q Consensus 165 ~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G 244 (513)
.....+.+.+|..|+|+||+|+..+..++++|||++|+|++.+|.. .|+||||-|+.+|+.+++-+||.+|
T Consensus 39 k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~E---------SG~taLHRaiyyG~idca~lLL~~g 109 (1267)
T KOG0783|consen 39 KSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEE---------SGYTALHRAIYYGNIDCASLLLSKG 109 (1267)
T ss_pred HhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeecccc---------ccchHhhHhhhhchHHHHHHHHhcC
Confidence 3344568899999999999999999999999999999999999977 6999999999999999999999999
Q ss_pred CCCCCcCCCCCcHHHHHHHcCccchhhhcC
Q 010335 245 ASRMSLNCNGWLPLDVARMWGRHWLEPLLA 274 (513)
Q Consensus 245 ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~ 274 (513)
+.+..+|++|..||++..+.-...+...+.
T Consensus 110 ~SL~i~Dkeglsplq~~~r~~~~~i~~~~d 139 (1267)
T KOG0783|consen 110 RSLRIKDKEGLSPLQFLSRVLSSTIHPVLD 139 (1267)
T ss_pred CceEEecccCCCHHHHHhhccccccccccC
Confidence 999999999999999988755444444443
No 90
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.91 E-value=2e-09 Score=108.36 Aligned_cols=94 Identities=31% Similarity=0.397 Sum_probs=84.1
Q ss_pred cccccCCCCc------HHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335 171 VNKAADGGIT------ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244 (513)
Q Consensus 171 i~~~d~~G~T------pLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G 244 (513)
...+|++|.| -||..++.|+.+..-.||..||++|..+.+ .|.||||.|++.|+..-+++|+=+|
T Consensus 120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpe---------kg~TpLHvAAk~Gq~~Q~ElL~vYG 190 (669)
T KOG0818|consen 120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPE---------KGNTPLHVAAKAGQILQAELLAVYG 190 (669)
T ss_pred CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcc---------cCCchhHHHHhccchhhhhHHhhcc
Confidence 4456777665 489999999999999999999999998876 5999999999999999999999999
Q ss_pred CCCCCcCCCCCcHHHHHHHcCccchhhhc
Q 010335 245 ASRMSLNCNGWLPLDVARMWGRHWLEPLL 273 (513)
Q Consensus 245 ad~~~~d~~G~TpL~~A~~~g~~~iv~lL 273 (513)
||+++.|.+|+||+.+|...||.++.+-|
T Consensus 191 AD~~a~d~~GmtP~~~AR~~gH~~laeRl 219 (669)
T KOG0818|consen 191 ADPGAQDSSGMTPVDYARQGGHHELAERL 219 (669)
T ss_pred CCCCCCCCCCCcHHHHHHhcCchHHHHHH
Confidence 99999999999999999999998765443
No 91
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.81 E-value=4.5e-09 Score=105.41 Aligned_cols=90 Identities=28% Similarity=0.307 Sum_probs=83.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhc-CCCCCcccCCCCCcHHHHHHHcC
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNG 123 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~-ga~~~~~~~~~G~TpLh~A~~~g 123 (513)
+.-++++|+..|++..++.+.-.|.|++.+|++.+|+||.|+..|+.+++|+|++. +.+++..+. +|+|||.-|...+
T Consensus 506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDR-w~rtPlDdA~~F~ 584 (622)
T KOG0506|consen 506 TVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDR-WGRTPLDDAKHFK 584 (622)
T ss_pred chhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhc-cCCCcchHhHhcC
Confidence 46789999999999999999999999999999999999999999999999999985 778887775 9999999999999
Q ss_pred CHHHHHHHHHcc
Q 010335 124 HVRCIRLVVADF 135 (513)
Q Consensus 124 ~~~iv~~Ll~~~ 135 (513)
|.+++++|-+..
T Consensus 585 h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 585 HKEVVKLLEEAQ 596 (622)
T ss_pred cHHHHHHHHHHh
Confidence 999999997543
No 92
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.80 E-value=2.3e-08 Score=102.10 Aligned_cols=121 Identities=23% Similarity=0.260 Sum_probs=109.0
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCChHHHHHHH
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD--VNSRNYCGQTALMQACR 87 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gad--vn~~d~~g~TpLh~A~~ 87 (513)
-++.|..|+..+|+-.++.+...|.++.....+. .|.||+|+..|+-+||+|||++|.. ++..|..|.|+||.|+-
T Consensus 866 iseeil~av~~~D~~klqE~h~~gg~ll~~~~~~--~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~ 943 (1004)
T KOG0782|consen 866 ISEEILRAVLSSDLMKLQETHLNGGSLLIQGPDH--CSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAAC 943 (1004)
T ss_pred ccHHHHHHHHhccHHHHHHHHhcCCceEeeCcch--hhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH
Confidence 3466899999999999999999998887665555 7999999999999999999999864 56778899999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 010335 88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA 133 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~ 133 (513)
.++..+.++|++.|+.+...+. .|.||-.-|-..|+.++..+|-+
T Consensus 944 ~~~r~vc~~lvdagasl~ktd~-kg~tp~eraqqa~d~dlaayle~ 988 (1004)
T KOG0782|consen 944 QRNRAVCQLLVDAGASLRKTDS-KGKTPQERAQQAGDPDLAAYLES 988 (1004)
T ss_pred hcchHHHHHHHhcchhheeccc-CCCChHHHHHhcCCchHHHHHhh
Confidence 9999999999999999988886 89999999999999999999864
No 93
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.75 E-value=3.7e-08 Score=99.38 Aligned_cols=86 Identities=29% Similarity=0.329 Sum_probs=62.3
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHH
Q 010335 13 RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWE 92 (513)
Q Consensus 13 ~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~e 92 (513)
.||..++.|+++..-.||..|++.+.+.... |.||||+|++.|+.--+++|+-+|+|++..|..|+||+.+|-..||-+
T Consensus 136 QLhasvRt~nlet~LRll~lGA~~N~~hpek-g~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~ 214 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEK-GNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE 214 (669)
T ss_pred HHHHHhhcccHHHHHHHHHcccccCCCCccc-CCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence 5777777777777777777777776654443 377777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 010335 93 VVQTLLL 99 (513)
Q Consensus 93 iVk~LL~ 99 (513)
+.+.|++
T Consensus 215 laeRl~e 221 (669)
T KOG0818|consen 215 LAERLVE 221 (669)
T ss_pred HHHHHHH
Confidence 7666654
No 94
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.67 E-value=1.4e-08 Score=102.06 Aligned_cols=95 Identities=20% Similarity=0.258 Sum_probs=87.4
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC-CCCCCCcCC
Q 010335 174 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-GASRMSLNC 252 (513)
Q Consensus 174 ~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~-Gad~~~~d~ 252 (513)
++.++...+++|+..|++..++.+.-.|.|++..|.+ .+|+||+|+..|+.+++++||+. +.+++.+|.
T Consensus 502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD----------~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDR 571 (622)
T KOG0506|consen 502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYD----------DRTALHVAAAEGHVEVVKFLLNACKVDPDPKDR 571 (622)
T ss_pred ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccc----------cchhheeecccCceeHHHHHHHHHcCCCChhhc
Confidence 3445678999999999999999999999999999987 89999999999999999999986 999999999
Q ss_pred CCCcHHHHHHHcCccchhhhcCCCCC
Q 010335 253 NGWLPLDVARMWGRHWLEPLLAPSSD 278 (513)
Q Consensus 253 ~G~TpL~~A~~~g~~~iv~lL~~~~~ 278 (513)
.|+|||+-|...+|.+++++|.+...
T Consensus 572 w~rtPlDdA~~F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 572 WGRTPLDDAKHFKHKEVVKLLEEAQY 597 (622)
T ss_pred cCCCcchHhHhcCcHHHHHHHHHHhc
Confidence 99999999999999999999977544
No 95
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.66 E-value=6e-08 Score=99.54 Aligned_cols=92 Identities=32% Similarity=0.420 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCc--cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335 12 ERLVSAARDGDFVEAKMLLDCNPCLA--KYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89 (513)
Q Consensus 12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~--~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g 89 (513)
..|..|+...|+..+-.||.+|.... .....++|.|+||+|+..|++.+.++|+=+|+|+-.+|..|.|+|.||-+.|
T Consensus 626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~ 705 (749)
T KOG0705|consen 626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG 705 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence 44555555555555555555554332 2233344455555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHhcCCC
Q 010335 90 HWEVVQTLLLFRCN 103 (513)
Q Consensus 90 ~~eiVk~LL~~ga~ 103 (513)
.-|++..|+++|+.
T Consensus 706 sqec~d~llq~gcp 719 (749)
T KOG0705|consen 706 SQECIDVLLQYGCP 719 (749)
T ss_pred cHHHHHHHHHcCCC
Confidence 55555555555543
No 96
>PF13606 Ank_3: Ankyrin repeat
Probab=98.65 E-value=3.2e-08 Score=62.77 Aligned_cols=29 Identities=45% Similarity=0.733 Sum_probs=27.8
Q ss_pred CCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335 221 GSTPLHFAACGGNLKCCQVLLSRGASRMS 249 (513)
Q Consensus 221 G~TpLh~Aa~~g~~eivk~LL~~Gad~~~ 249 (513)
|+||||+|+..|+.++|++||++|+|+|.
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 89999999999999999999999999874
No 97
>PF13606 Ank_3: Ankyrin repeat
Probab=98.61 E-value=4.7e-08 Score=61.98 Aligned_cols=30 Identities=47% Similarity=0.641 Sum_probs=28.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCccc
Q 010335 177 GGITALHMAALNGYFDCVQLLLDLHANVSA 206 (513)
Q Consensus 177 ~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~ 206 (513)
+|+||||+|+.+|+.++|++|+++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999874
No 98
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.61 E-value=5.6e-08 Score=63.26 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=30.6
Q ss_pred CCchhHHHhhCCCHHHHHHHHHCCCCCCCcCC
Q 010335 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNC 252 (513)
Q Consensus 221 G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~ 252 (513)
|.||||+|+..|+.+++++|+++|++++.+|+
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 89999999999999999999999999998874
No 99
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.56 E-value=3.6e-08 Score=104.88 Aligned_cols=76 Identities=29% Similarity=0.392 Sum_probs=63.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHH
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNY-CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV 121 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~-~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~ 121 (513)
|+|+||+|+..|...+++|||++|+|++.+|+ .|.||||.|+.+|++|++-+||.+|+.+...|. +|..||.+..+
T Consensus 52 GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dk-eglsplq~~~r 128 (1267)
T KOG0783|consen 52 GRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDK-EGLSPLQFLSR 128 (1267)
T ss_pred ccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecc-cCCCHHHHHhh
Confidence 48888888888888888888888888888885 588888888888888888888888888877775 88888887665
No 100
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.56 E-value=1.1e-07 Score=61.92 Aligned_cols=31 Identities=58% Similarity=1.024 Sum_probs=23.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRN 75 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d 75 (513)
|.||||+|+..|+.+++++|+++|++++.+|
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 4777777777777777777777777777765
No 101
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.49 E-value=4e-07 Score=98.29 Aligned_cols=130 Identities=26% Similarity=0.264 Sum_probs=100.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHH
Q 010335 46 NSPLHFAAAKGHNEIVALLLENG----ADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV 121 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~G----advn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~ 121 (513)
..-...|+.+|+...|+..++.. .++|-+|.-|+++|+.|+.+.+.|++++|+++.... ..+|.+|+.
T Consensus 26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~ 97 (822)
T KOG3609|consen 26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIA 97 (822)
T ss_pred hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHH
Confidence 45577889999999998888742 457888999999999999999999999999887654 348999999
Q ss_pred cCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 010335 122 NGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201 (513)
Q Consensus 122 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G 201 (513)
.|..++|++++.+......... .. ..-...-..+.|||++||..+++||++.|+++|
T Consensus 98 ~~~v~~VE~ll~~~~~~~~~~~-----~~------------------d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg 154 (822)
T KOG3609|consen 98 VGSVPLVELLLVHFVDAPYLER-----SG------------------DANSPHFTPDITPLMLAAHLNNFEILQCLLTRG 154 (822)
T ss_pred HHHHHHHHHHHhcccccchhcc-----cc------------------ccCcccCCCCccHHHHHHHhcchHHHHHHHHcC
Confidence 9999999999977544322111 00 001112234679999999999999999999999
Q ss_pred CCccc
Q 010335 202 ANVSA 206 (513)
Q Consensus 202 advn~ 206 (513)
+.+..
T Consensus 155 ~~i~~ 159 (822)
T KOG3609|consen 155 HCIPI 159 (822)
T ss_pred CCCCC
Confidence 98753
No 102
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.44 E-value=2e-07 Score=95.37 Aligned_cols=81 Identities=30% Similarity=0.391 Sum_probs=69.2
Q ss_pred cHHHHHHHcCCHHHHHHHH--HcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcH
Q 010335 180 TALHMAALNGYFDCVQLLL--DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 257 (513)
Q Consensus 180 TpLh~Aa~~g~~eiv~~Ll--~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~Tp 257 (513)
-|||+++.....+-+..++ +.+..++..|.. |.||||+|+..|+.+.++.|+.+||++..+|++||+|
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~----------g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~ 91 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPP----------GRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSP 91 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCC----------CCccHHHHHHhcCHHHHHHHHhcCCCccccccccccH
Confidence 4699999988876665543 345567777766 9999999999999999999999999999999999999
Q ss_pred HHHHHHcCccchh
Q 010335 258 LDVARMWGRHWLE 270 (513)
Q Consensus 258 L~~A~~~g~~~iv 270 (513)
||-|+..|+..++
T Consensus 92 L~EAv~~g~~q~i 104 (560)
T KOG0522|consen 92 LHEAVSTGNEQII 104 (560)
T ss_pred HHHHHHcCCHHHH
Confidence 9999999987554
No 103
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.43 E-value=9.1e-07 Score=90.67 Aligned_cols=120 Identities=24% Similarity=0.246 Sum_probs=101.0
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhh
Q 010335 82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161 (513)
Q Consensus 82 Lh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (513)
|..|+..+.+--++.+...|.++...+. +..+.||+|+..|+-++|++|++++.+
T Consensus 870 il~av~~~D~~klqE~h~~gg~ll~~~~-~~~sllh~a~~tg~~eivkyildh~p~------------------------ 924 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNGGSLLIQGP-DHCSLLHYAAKTGNGEIVKYILDHGPS------------------------ 924 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcCCceEeeCc-chhhHHHHHHhcCChHHHHHHHhcCCH------------------------
Confidence 4556666665555556667777776664 788999999999999999999988753
Q ss_pred hchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHH
Q 010335 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 241 (513)
Q Consensus 162 ~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL 241 (513)
.+++..|..|.|+||-|+..++..+.++|++.|+.+-..|.. |.||-.-|-+.|..++..+|-
T Consensus 925 -------elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~k----------g~tp~eraqqa~d~dlaayle 987 (1004)
T KOG0782|consen 925 -------ELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSK----------GKTPQERAQQAGDPDLAAYLE 987 (1004)
T ss_pred -------HHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccC----------CCChHHHHHhcCCchHHHHHh
Confidence 336677889999999999999999999999999999998877 999999999999999999986
Q ss_pred HC
Q 010335 242 SR 243 (513)
Q Consensus 242 ~~ 243 (513)
.+
T Consensus 988 ~r 989 (1004)
T KOG0782|consen 988 SR 989 (1004)
T ss_pred hh
Confidence 54
No 104
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.39 E-value=2.1e-07 Score=66.78 Aligned_cols=48 Identities=33% Similarity=0.751 Sum_probs=39.8
Q ss_pred cccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335 317 ADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 376 (513)
Q Consensus 317 ~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~ 376 (513)
...|.||++...++++.||||. +|..|+..+.... ..||+||.+|.++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------------~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRK------------KKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTT------------SBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccC------------CCCCcCChhhcCC
Confidence 3679999999999999999999 9999999997632 2599999999764
No 105
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.38 E-value=9.7e-07 Score=90.89 Aligned_cols=92 Identities=32% Similarity=0.390 Sum_probs=81.4
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCCC--C--CCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHc
Q 010335 47 SPLHFAAAKGHNEIVALLLENGADV--N--SRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN 122 (513)
Q Consensus 47 TpLh~Aa~~g~~eivk~LL~~Gadv--n--~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~ 122 (513)
.-|.-|+...++..+-+||.+|... | .-+.+|.|+||+|+..|++.+.++|+=+|+++...|. +|+|+|.||-+.
T Consensus 626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda-~g~t~l~yar~a 704 (749)
T KOG0705|consen 626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDA-HGRTALFYARQA 704 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceeccc-CCchhhhhHhhc
Confidence 3477889999999999999998643 2 2356789999999999999999999999999999996 999999999999
Q ss_pred CCHHHHHHHHHccCCCC
Q 010335 123 GHVRCIRLVVADFVPSV 139 (513)
Q Consensus 123 g~~~iv~~Ll~~~~~~~ 139 (513)
|..+++..|+.+|.++.
T Consensus 705 ~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 705 GSQECIDVLLQYGCPDE 721 (749)
T ss_pred ccHHHHHHHHHcCCCcc
Confidence 99999999999887654
No 106
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.35 E-value=1.1e-06 Score=90.00 Aligned_cols=89 Identities=27% Similarity=0.257 Sum_probs=56.5
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH
Q 010335 12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHW 91 (513)
Q Consensus 12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~ 91 (513)
-+||.++...+.+-+..++...........+-.|+||||+|+..|+.+.++.|+..|+|+..+|..|++|||.|+..|+.
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~ 101 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE 101 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence 34677777777776666554432222222222236777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhc
Q 010335 92 EVVQTLLLF 100 (513)
Q Consensus 92 eiVk~LL~~ 100 (513)
+++..++.+
T Consensus 102 q~i~~vlr~ 110 (560)
T KOG0522|consen 102 QIITEVLRH 110 (560)
T ss_pred HHHHHHHHH
Confidence 666666543
No 107
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.33 E-value=1.9e-06 Score=93.14 Aligned_cols=123 Identities=19% Similarity=0.180 Sum_probs=101.1
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCC--CccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPC--LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQA 85 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~--~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A 85 (513)
+.++..+..|+..||+-.|+..++.... ++....+.-|.++|+.|+.+.+.+++++|++.+..+ ..+|.+|
T Consensus 23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~a 95 (822)
T KOG3609|consen 23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLA 95 (822)
T ss_pred chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHH
Confidence 5567889999999999999999987544 444445555699999999999999999999987654 4589999
Q ss_pred HHcCCHHHHHHHHhcCCCC---------CcccCCCCCcHHHHHHHcCCHHHHHHHHHccCC
Q 010335 86 CRYGHWEVVQTLLLFRCNV---------TRADYLSGRTALHFAAVNGHVRCIRLVVADFVP 137 (513)
Q Consensus 86 ~~~g~~eiVk~LL~~ga~~---------~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~ 137 (513)
+..|..++|+.++.+-... +......+-|||.+|+..++.++++.|+.++..
T Consensus 96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~ 156 (822)
T KOG3609|consen 96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC 156 (822)
T ss_pred HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence 9999999999999864332 222233678999999999999999999988764
No 108
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.8e-07 Score=65.52 Aligned_cols=50 Identities=32% Similarity=0.681 Sum_probs=43.2
Q ss_pred ccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeee
Q 010335 318 DTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTK 378 (513)
Q Consensus 318 ~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~ 378 (513)
++|.||.+.+-+.+.--|||. +|..|++++-.. +...||+||.+|.++.+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~-----------~~g~CPiCRapi~dvIk 58 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA-----------LHGCCPICRAPIKDVIK 58 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHc-----------cCCcCcchhhHHHHHHH
Confidence 899999999999999999999 899999999643 23369999999987754
No 109
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.14 E-value=1.8e-06 Score=95.69 Aligned_cols=88 Identities=36% Similarity=0.453 Sum_probs=81.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCc
Q 010335 177 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 256 (513)
Q Consensus 177 ~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~T 256 (513)
.|.|+||.|+.++..-++++|++.|+++|..+.. |.||||.+...|+...+.+|+++||+.++.+.+|.+
T Consensus 655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~----------g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~ 724 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSK----------GRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKL 724 (785)
T ss_pred cccchhhhhhccchHHHHHHHHhcCCcchhhhcc----------CCCcchhhhhhcccchhhhhccccccccccCccCcc
Confidence 5789999999999999999999999999999987 999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccchhhhcC
Q 010335 257 PLDVARMWGRHWLEPLLA 274 (513)
Q Consensus 257 pL~~A~~~g~~~iv~lL~ 274 (513)
||++|....+.+++-++.
T Consensus 725 ~l~~a~~~~~~d~~~l~~ 742 (785)
T KOG0521|consen 725 PLDIAMEAANADIVLLLR 742 (785)
T ss_pred hhhHHhhhccccHHHHHh
Confidence 999998887666655443
No 110
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.12 E-value=3.1e-06 Score=93.88 Aligned_cols=102 Identities=29% Similarity=0.299 Sum_probs=87.8
Q ss_pred HhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccC
Q 010335 30 LDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADY 109 (513)
Q Consensus 30 L~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~ 109 (513)
+..+.+++.......|.|+||.|+..|..-++++||++|+++|..|..|.||||.+...|+...+..|++.|++.+..+.
T Consensus 641 ~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~ 720 (785)
T KOG0521|consen 641 LAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDP 720 (785)
T ss_pred hcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCc
Confidence 34445555443334458999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHH
Q 010335 110 LSGRTALHFAAVNGHVRCIRLVV 132 (513)
Q Consensus 110 ~~G~TpLh~A~~~g~~~iv~~Ll 132 (513)
.|.++|++|....+.+++-++.
T Consensus 721 -~~~~~l~~a~~~~~~d~~~l~~ 742 (785)
T KOG0521|consen 721 -DGKLPLDIAMEAANADIVLLLR 742 (785)
T ss_pred -cCcchhhHHhhhccccHHHHHh
Confidence 9999999998877777766654
No 111
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.09 E-value=7.7e-06 Score=80.53 Aligned_cols=71 Identities=28% Similarity=0.292 Sum_probs=57.8
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHH
Q 010335 48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA 119 (513)
Q Consensus 48 pLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A 119 (513)
-|..|++.|+++.|++|++.|++||.+|....+||.+|+..||.++||+||++|+--.... ..|.-.+.-|
T Consensus 39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdt-f~G~RC~Yga 109 (516)
T KOG0511|consen 39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDT-FDGDRCHYGA 109 (516)
T ss_pred HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccc-cCcchhhhhh
Confidence 5888999999999999999999999999888899999999999999999999888665444 3666554443
No 112
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.1e-06 Score=82.48 Aligned_cols=55 Identities=29% Similarity=0.657 Sum_probs=46.6
Q ss_pred cccccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335 315 DDADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 381 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 381 (513)
+....|+||+....+++.+||+|. +|..|+..|--. ...|||||++|..+..+-.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q------------~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ------------TNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh------------hcCCCccccchHhhheecc
Confidence 447899999999999999999999 899999999522 1249999999998877654
No 113
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.80 E-value=5.3e-05 Score=74.80 Aligned_cols=75 Identities=29% Similarity=0.449 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335 12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89 (513)
Q Consensus 12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g 89 (513)
..|..|++.||.+.|++|++.|.+++..+.+. .+||.+|+.-||.++|++||++|+--+.-..+|... ||++.+.
T Consensus 38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD--~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLnd 112 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFD--SSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALND 112 (516)
T ss_pred HHHHHHhhcccHHHHHHHHHhCCCcchhhccc--ccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhhH
Confidence 46899999999999999999999999888887 899999999999999999999998654444556554 4444443
No 114
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.78 E-value=6.8e-05 Score=67.53 Aligned_cols=58 Identities=29% Similarity=0.234 Sum_probs=37.8
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 010335 46 NSPLHFAAAKGHNEIVALLLENG-ADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCN 103 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~G-advn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~ 103 (513)
+|+|+.|+..|+.+.+.||+.+| ++|...|..|.+++.+|-+.|+.++|+.|.+.-.+
T Consensus 13 WTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e 71 (223)
T KOG2384|consen 13 WTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE 71 (223)
T ss_pred chHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence 66666666666666666666666 66666666666666666666666666666665433
No 115
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.77 E-value=4.4e-05 Score=68.73 Aligned_cols=66 Identities=26% Similarity=0.248 Sum_probs=59.9
Q ss_pred cccccCCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335 171 VNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246 (513)
Q Consensus 171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad 246 (513)
+|.+|..|||+|+.|+..|..+.+.||+.+| +.+...+.. |.+++.+|-+.|..++|+.|.++-.+
T Consensus 5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~s----------sldaaqlaek~g~~~fvh~lfe~~~e 71 (223)
T KOG2384|consen 5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDES----------SLDAAQLAEKGGAQAFVHSLFENDRE 71 (223)
T ss_pred ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccc----------cchHHHHHHhcChHHHHHHHHHHhcc
Confidence 7889999999999999999999999999999 888888876 99999999999999999999987433
No 116
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.68 E-value=6e-05 Score=83.54 Aligned_cols=129 Identities=19% Similarity=0.109 Sum_probs=97.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHH-hcCCCCCcccCCCCCcHHHHHH
Q 010335 43 GGLNSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQTALMQACRYGHWEVVQTLL-LFRCNVTRADYLSGRTALHFAA 120 (513)
Q Consensus 43 ~~g~TpLh~Aa~~g~~eivk~LL~~-Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL-~~ga~~~~~~~~~G~TpLh~A~ 120 (513)
-.+++.||+++..++.-.++.+++- |......|.+|...+|+ |..++.+.+-+|+ -.|..++.++. .|+||||||+
T Consensus 572 ~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~-~G~tpL~wAa 649 (975)
T KOG0520|consen 572 FRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDR-NGWTPLHWAA 649 (975)
T ss_pred CcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccC-CCCcccchHh
Confidence 3458999999999999999999986 76667788888889998 4455555544444 46788888886 9999999999
Q ss_pred HcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 200 (513)
Q Consensus 121 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~ 200 (513)
..|+..++..|++-++...... ......-.|.|+-.+|..+|+..+.-+|-+.
T Consensus 650 ~~G~e~l~a~l~~lga~~~~~t---------------------------dps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 650 FRGREKLVASLIELGADPGAVT---------------------------DPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred hcCHHHHHHHHHHhcccccccc---------------------------CCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 9999999999997655432000 0233344678888888888888887777664
No 117
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.67 E-value=5.4e-05 Score=83.85 Aligned_cols=134 Identities=22% Similarity=0.188 Sum_probs=93.5
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHhc-CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH-HccCCCCccccchhhh
Q 010335 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVV-ADFVPSVPFEVMNTQI 148 (513)
Q Consensus 71 vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~-ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll-~~~~~~~~~~~~~~~~ 148 (513)
+......|+|.||+++..++.-+++.+++- |......+. +|...+|+++ .++.+..-+|+ -++
T Consensus 567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~-d~qgV~hfca-~lg~ewA~ll~~~~~------------- 631 (975)
T KOG0520|consen 567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDR-DGQGVIHFCA-ALGYEWAFLPISADG------------- 631 (975)
T ss_pred cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcc-cCCChhhHhh-hcCCceeEEEEeecc-------------
Confidence 445566788999999998888888888875 544444443 6777888844 44444433332 111
Q ss_pred cccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHH
Q 010335 149 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 228 (513)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A 228 (513)
.-++.+|..|+||||+|+.+|+..++..|++.|++........ ...-.|.|+-.+|
T Consensus 632 --------------------~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps----~~~p~g~ta~~la 687 (975)
T KOG0520|consen 632 --------------------VAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPS----PETPGGKTAADLA 687 (975)
T ss_pred --------------------cccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCC----CCCCCCCchhhhh
Confidence 1177888999999999999999999999998888776444221 1112488888888
Q ss_pred hhCCCHHHHHHHHHC
Q 010335 229 ACGGNLKCCQVLLSR 243 (513)
Q Consensus 229 a~~g~~eivk~LL~~ 243 (513)
-.+|+..+.-+|-+.
T Consensus 688 ~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 688 RANGHKGIAGYLSEK 702 (975)
T ss_pred hcccccchHHHHhhh
Confidence 888888888877654
No 118
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=2.3e-05 Score=74.52 Aligned_cols=48 Identities=27% Similarity=0.747 Sum_probs=41.9
Q ss_pred ccccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 316 DADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
....|.||+|.+.+-++++|||. .|.+|..++. -|||||+.|++++++
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~----------------eCPICRqyi~rvvri 347 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN----------------ECPICRQYIVRVVRI 347 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhccccc----------------cCchHHHHHHHHHhh
Confidence 37899999999999999999999 7999995553 399999999987764
No 119
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.20 E-value=0.00029 Score=64.39 Aligned_cols=68 Identities=21% Similarity=0.414 Sum_probs=45.8
Q ss_pred ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCC----CCCCCCCCCCCCccccceeeecCC
Q 010335 314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEM----VGPPGSIPCPLCRHGIVSFTKLPG 381 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~----~~~~~~~~Cp~Cr~~i~~~~~~~~ 381 (513)
......|.||++...+.+..+|||.+|..|...+....+.+... ........||+||..|.....+|=
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi 86 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI 86 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence 34567899999999888999999999999998764322111000 001123469999999876544443
No 120
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.17 E-value=0.00022 Score=49.48 Aligned_cols=41 Identities=37% Similarity=0.767 Sum_probs=32.0
Q ss_pred ccchhhhccc---ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCc
Q 010335 318 DTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCR 370 (513)
Q Consensus 318 ~~C~iC~~~~---~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr 370 (513)
+.|.||++.. ..++..+|||.+|.+|...+..... .||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~------------~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN------------SCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS------------B-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC------------cCCccC
Confidence 4689999765 4667889999999999999976632 599998
No 121
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.16 E-value=0.00017 Score=71.50 Aligned_cols=54 Identities=28% Similarity=0.619 Sum_probs=43.6
Q ss_pred ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
.-+.|.||.+..-+|...||||.+|..|.-.+...+ +.-.||+||-+|.+...+
T Consensus 368 TFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd----------~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 368 TFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSD----------EGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred hHHHHHHhhccCCCcccccccchHHHHHHHhhcccC----------CCCCCCceeeEeccccce
Confidence 357899999999999999999999999997775332 122499999999877544
No 122
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00021 Score=68.50 Aligned_cols=49 Identities=35% Similarity=0.845 Sum_probs=41.7
Q ss_pred CccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335 313 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 373 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i 373 (513)
.......|.+|++...+..+.||||.+|-.|.+..|.+.. -||+||...
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~------------eCPlCR~~~ 283 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA------------ECPLCREKF 283 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc------------CCCcccccC
Confidence 3445689999999999999999999999999999997741 299999764
No 123
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.12 E-value=0.00041 Score=66.19 Aligned_cols=52 Identities=27% Similarity=0.697 Sum_probs=39.7
Q ss_pred ccccchhhhcccce--------EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 316 DADTCAVCLERACT--------VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 316 ~~~~C~iC~~~~~~--------v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
....|.||++.... .+..+|||.+|..|........ ..||+||..+.++++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~------------~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK------------NTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC------------CCCCCCCCEeeEEeee
Confidence 45899999986432 3556899999999998875432 2599999998877653
No 124
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.04 E-value=0.00062 Score=69.71 Aligned_cols=69 Identities=22% Similarity=0.195 Sum_probs=55.7
Q ss_pred CHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHH
Q 010335 190 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262 (513)
Q Consensus 190 ~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~ 262 (513)
-.+.|++|.+++.+.|..-.... ...-..|+||||+..|.-++|.+||+.|+|+..+|..|.||.+++.
T Consensus 403 ~p~~ie~lken~lsgnf~~~pe~----~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 403 EPDSIEALKENLLSGNFDVTPEA----NDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred chhHHHHHHhcCCcccccccccc----cccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 36778899998887764332110 0112679999999999999999999999999999999999999987
No 125
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00035 Score=65.05 Aligned_cols=59 Identities=25% Similarity=0.481 Sum_probs=49.2
Q ss_pred ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335 314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 381 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 381 (513)
....-.|.||+|...+-+...|||.+|-.|..++..... .+..||+|+..|..-..+|=
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~---------~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRP---------NSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcC---------CCeeCCccccccccceEEee
Confidence 345678999999999999999999999999999987642 45579999988887766664
No 126
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.98 E-value=0.00058 Score=46.02 Aligned_cols=38 Identities=29% Similarity=0.818 Sum_probs=30.0
Q ss_pred chhhhcccceE-EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCC
Q 010335 320 CAVCLERACTV-AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC 369 (513)
Q Consensus 320 C~iC~~~~~~v-~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~C 369 (513)
|.||++...+. +..+|||.+|..|........ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~------------~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKN------------PKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCT------------SB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCc------------CCCcCC
Confidence 68899888777 789999999999999886652 259988
No 127
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.98 E-value=0.00085 Score=46.00 Aligned_cols=42 Identities=26% Similarity=0.659 Sum_probs=29.8
Q ss_pred chhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCC
Q 010335 320 CAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC 369 (513)
Q Consensus 320 C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~C 369 (513)
|.||++-..+-+.++|||.+|..|...+-..... ....||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~--------~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSG--------SGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSS--------ST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCC--------cCCCCcCC
Confidence 7899999999999999999999999888654321 11579988
No 128
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.77 E-value=0.00012 Score=52.44 Aligned_cols=44 Identities=23% Similarity=0.520 Sum_probs=38.0
Q ss_pred CCCCCccccceeeecCC-CCccccccccccc-cCccccCCCCCCCCCCCCCchhhcc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLG-LCTPCMLHTRDAECESPACAPEIRK 419 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~-~c~~c~~~~~~~~~~~~~~~~~~~~ 419 (513)
.|++|......++.+|+ | . +|..|+....+....||+||++|.+
T Consensus 4 ~C~iC~~~~~~~~~~pCgH-----------~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 4 ECPICFENPRDVVLLPCGH-----------LCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp B-TTTSSSBSSEEEETTCE-----------EEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CCccCCccCCceEEeCCCC-----------hHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 59999999999999999 7 5 9999998888888999999999864
No 129
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.75 E-value=0.0011 Score=45.99 Aligned_cols=40 Identities=33% Similarity=0.856 Sum_probs=30.7
Q ss_pred chhhhccc---ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcc
Q 010335 320 CAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRH 371 (513)
Q Consensus 320 C~iC~~~~---~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~ 371 (513)
|.+|.+.. .......|||.+|..|...+. . ..+.||+||.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~-----------~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-G-----------KSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-C-----------CCCCCcCCCC
Confidence 66777665 346888999999999997775 1 3457999984
No 130
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.75 E-value=0.0013 Score=45.21 Aligned_cols=44 Identities=36% Similarity=0.775 Sum_probs=32.7
Q ss_pred cchhhhccc-ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335 319 TCAVCLERA-CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 373 (513)
Q Consensus 319 ~C~iC~~~~-~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i 373 (513)
.|.||.+.. ..+...+|||.+|..|...+... +...||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-----------~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-----------GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-----------CcCCCCCCCCcC
Confidence 378888877 44455569999999999877644 233699999764
No 131
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.00054 Score=67.83 Aligned_cols=49 Identities=33% Similarity=0.687 Sum_probs=38.2
Q ss_pred cccccchhhhcccceEEeeCCCccc-chhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 315 DDADTCAVCLERACTVAAEGCRHEL-CVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~-C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
...+.|.||++.+-+..+.||||.+ |..|...+ +.||+||+.|...+++
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l----------------~~CPvCR~rI~~~~k~ 352 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHL----------------PQCPVCRQRIRLVRKR 352 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEEchHHHhhC----------------CCCchhHHHHHHHHHH
Confidence 3568999999999999999999994 55554332 1499999999876653
No 132
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00099 Score=59.41 Aligned_cols=49 Identities=27% Similarity=0.718 Sum_probs=38.0
Q ss_pred ccccccchhhhcccceE--EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 314 SDDADTCAVCLERACTV--AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v--~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
......|.||++...-. +...|||.||.+|+.....+.. +||+|+..|.
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~------------~CP~C~kkIt 178 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN------------KCPTCRKKIT 178 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHhCC------------CCCCcccccc
Confidence 44568899999865544 5689999999999988865532 5999997654
No 133
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.62 E-value=0.0015 Score=44.44 Aligned_cols=40 Identities=35% Similarity=0.830 Sum_probs=32.5
Q ss_pred chhhhcccceEE-eeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCC
Q 010335 320 CAVCLERACTVA-AEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC 369 (513)
Q Consensus 320 C~iC~~~~~~v~-~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~C 369 (513)
|.||++...... ..+|||.+|..|...+-... +...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~----------~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS----------GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT----------SSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhc----------CCccCCcC
Confidence 678998887776 99999999999999987641 23469998
No 134
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.61 E-value=0.0034 Score=37.61 Aligned_cols=28 Identities=50% Similarity=0.782 Sum_probs=25.8
Q ss_pred CCchhHHHhhCCCHHHHHHHHHCCCCCC
Q 010335 221 GSTPLHFAACGGNLKCCQVLLSRGASRM 248 (513)
Q Consensus 221 G~TpLh~Aa~~g~~eivk~LL~~Gad~~ 248 (513)
|.||||+|+..++.++++.|+++|.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 7899999999999999999999988764
No 135
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.59 E-value=0.004 Score=37.30 Aligned_cols=26 Identities=54% Similarity=0.945 Sum_probs=16.9
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCC
Q 010335 46 NSPLHFAAAKGHNEIVALLLENGADV 71 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~Gadv 71 (513)
.||||+|+..++.+++++|++.|.++
T Consensus 3 ~~~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 3 RTPLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 56666666666666666666666544
No 136
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.50 E-value=0.0045 Score=63.62 Aligned_cols=62 Identities=27% Similarity=0.293 Sum_probs=37.1
Q ss_pred HHHHHHHHHCCCCCCC------CCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHH
Q 010335 58 NEIVALLLENGADVNS------RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120 (513)
Q Consensus 58 ~eivk~LL~~Gadvn~------~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~ 120 (513)
.+.+++|.+++++.|. .++...|+||+|+..|.-++|.+||+.|+|+...+. .|+||..++.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~-~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDG-AGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhccc-CCCCcccccc
Confidence 4555666666555432 334455666666666666666666666666666664 6666666654
No 137
>PHA02926 zinc finger-like protein; Provisional
Probab=96.50 E-value=0.002 Score=59.67 Aligned_cols=57 Identities=25% Similarity=0.584 Sum_probs=40.8
Q ss_pred cccccchhhhcccc---------eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceee
Q 010335 315 DDADTCAVCLERAC---------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT 377 (513)
Q Consensus 315 ~~~~~C~iC~~~~~---------~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~ 377 (513)
.....|.||++..- .-...+|+|.+|..|......... .+.....||+||.....++
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~------~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR------ETGASDNCPICRTRFRNIT 233 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc------ccCcCCcCCCCcceeeeec
Confidence 35689999998531 236779999999999998876431 1123456999998877443
No 138
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0016 Score=67.42 Aligned_cols=52 Identities=29% Similarity=0.697 Sum_probs=42.5
Q ss_pred cccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 317 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 317 ~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
...|.||++.+.......|||.+|..|.|.+-.... .. +...||+||..|.-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~----~~---~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSA----IK---GPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhc----cc---CCccCCchhhhccc
Confidence 688999999998888888999999999999865531 11 33479999999876
No 139
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0016 Score=61.84 Aligned_cols=47 Identities=30% Similarity=0.687 Sum_probs=39.0
Q ss_pred ccccchhhhcccceEEeeCCCcccchhhHhH-hhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335 316 DADTCAVCLERACTVAAEGCRHELCVRCALY-LCSTNNIPSEMVGPPGSIPCPLCRHGI 373 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~-l~~~~~~~~~~~~~~~~~~Cp~Cr~~i 373 (513)
....|.+|++..-...+.+|||.+|-.|.+. ++... .-.||+||..+
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k-----------~~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK-----------YEFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhc-----------cccCchhhhhc
Confidence 3567999999999999999999999999998 65442 22699999764
No 140
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=95.95 E-value=0.0055 Score=40.33 Aligned_cols=39 Identities=31% Similarity=0.821 Sum_probs=30.9
Q ss_pred chhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCC
Q 010335 320 CAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC 369 (513)
Q Consensus 320 C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~C 369 (513)
|.||++........+|||.+|..|...+... +...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~-----------~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKS-----------GNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHh-----------CcCCCCCC
Confidence 6788888888888999999999999877541 23359987
No 141
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=95.66 E-value=0.013 Score=45.48 Aligned_cols=43 Identities=37% Similarity=0.838 Sum_probs=32.1
Q ss_pred ccccchhhhccc-------------ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCc
Q 010335 316 DADTCAVCLERA-------------CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCR 370 (513)
Q Consensus 316 ~~~~C~iC~~~~-------------~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr 370 (513)
..+.|.||++.. +.+...+|||.+...|........+ .||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~------------~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN------------TCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS------------B-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC------------cCCCCC
Confidence 345699998654 6777889999999999988875532 599998
No 142
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.64 E-value=0.0072 Score=41.54 Aligned_cols=31 Identities=29% Similarity=0.638 Sum_probs=19.3
Q ss_pred chhhhcccce----EEeeCCCcccchhhHhHhhccC
Q 010335 320 CAVCLERACT----VAAEGCRHELCVRCALYLCSTN 351 (513)
Q Consensus 320 C~iC~~~~~~----v~~~~Cgh~~C~~C~l~l~~~~ 351 (513)
|.||.+ ..+ -..++|||.+|.+|...+..+.
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 678888 544 4556899999999999998753
No 143
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.0055 Score=57.60 Aligned_cols=43 Identities=40% Similarity=0.684 Sum_probs=35.5
Q ss_pred chhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeee
Q 010335 320 CAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTK 378 (513)
Q Consensus 320 C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~ 378 (513)
|..|.++...|...||.|. +|..|.-. + ..||+|+..+.+.+-
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-~---------------~~CPiC~~~~~s~~~ 204 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-L---------------RICPICRSPKTSSVE 204 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-C---------------ccCCCCcChhhceee
Confidence 9999999999999999999 89888832 1 139999988776653
No 144
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=95.50 E-value=0.1 Score=47.37 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=20.0
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHH
Q 010335 48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97 (513)
Q Consensus 48 pLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~L 97 (513)
.|..|+..+.+.|++..-+...+- -...++-+-.||+..+.|+|+|+
T Consensus 49 Ll~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI 95 (192)
T PF03158_consen 49 LLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWI 95 (192)
T ss_pred HHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHH
Confidence 344444455555544443322110 11234444455555555555554
No 145
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.47 E-value=0.01 Score=58.07 Aligned_cols=59 Identities=25% Similarity=0.537 Sum_probs=46.8
Q ss_pred ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC
Q 010335 314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 382 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~ 382 (513)
.++...|.||.+....+...||+|.+|.-|++++-.--+ .+-||+||.+-..++....+
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~----------~K~C~~CrTE~e~V~fT~~~ 116 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM----------QKGCPLCRTETEAVVFTASS 116 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh----------ccCCCccccccceEEEecCC
Confidence 346789999999999999999999999999998854422 22499999887776655543
No 146
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.00076 Score=47.60 Aligned_cols=47 Identities=23% Similarity=0.508 Sum_probs=39.6
Q ss_pred CCCCCc-cccceeeecCCCCccccccccccccCccccCCCCC-CCCCCCCCchhhcccc
Q 010335 365 PCPLCR-HGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIRKNR 421 (513)
Q Consensus 365 ~Cp~Cr-~~i~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~~ 421 (513)
-|.||. ++|.++....|+ +..|..|..+.-+ .-.+||+||++|++-+
T Consensus 9 ECTICye~pvdsVlYtCGH----------MCmCy~Cg~rl~~~~~g~CPiCRapi~dvI 57 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGH----------MCMCYACGLRLKKALHGCCPICRAPIKDVI 57 (62)
T ss_pred ceeeeccCcchHHHHHcch----------HHhHHHHHHHHHHccCCcCcchhhHHHHHH
Confidence 499998 889999999994 3899999887766 5779999999998754
No 147
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=95.42 E-value=0.11 Score=48.65 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHcCC-CcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335 189 GYFDCVQLLLDLHA-NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246 (513)
Q Consensus 189 g~~eiv~~Ll~~Ga-dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad 246 (513)
.+..++++.+++|- ++|..-.. ..+|.|-|.-|+++++.+++.+||++||-
T Consensus 228 a~~kvL~~Fi~~Glv~vN~~F~~-------~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 228 ASYKVLEYFINRGLVDVNKKFQK-------VNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred CcHHHHHHHHhccccccchhhhc-------cCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 45778888888874 55544322 34699999999999999999999999984
No 148
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.29 E-value=0.014 Score=57.62 Aligned_cols=47 Identities=28% Similarity=0.609 Sum_probs=32.3
Q ss_pred cccchhhhcc---cceE--EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 317 ADTCAVCLER---ACTV--AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 317 ~~~C~iC~~~---~~~v--~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
...|.+|... .... ...+|||.+|..|...+-.. +..+||.|+..+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-----------~~~~CP~C~~~lr 54 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-----------GSGSCPECDTPLR 54 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-----------CCCCCCCCCCccc
Confidence 4679999972 2221 22289999999999887533 1236999986654
No 149
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.0042 Score=61.63 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=40.8
Q ss_pred CCCCCCCccccceeeecCCCCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 363 SIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
.+-|.||..+...++.|||| -|.+|..|+...+=-.+-||+||.+|+..
T Consensus 290 gkeCVIClse~rdt~vLPCR---------HLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCR---------HLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred CCeeEEEecCCcceEEecch---------hhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 55799999999999999994 26999999776663355699999999875
No 150
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.99 E-value=0.015 Score=59.84 Aligned_cols=49 Identities=27% Similarity=0.546 Sum_probs=39.5
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
.....|.||.+.....+..+|||.+|..|...+.... ..||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~------------~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ------------PKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC------------CCCCCCCCcccc
Confidence 3457899999988887889999999999998765431 259999988754
No 151
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=94.77 E-value=0.36 Score=43.89 Aligned_cols=71 Identities=11% Similarity=-0.035 Sum_probs=51.0
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHH
Q 010335 13 RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWE 92 (513)
Q Consensus 13 ~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~e 92 (513)
-|..|++.+-+.++++.-+...+. ....++.+-.|++..+.|+|+|+-++ + .-.+-.+-+-.|...+..+
T Consensus 49 Ll~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~qn---L--~i~~~~~iFdIA~~~kDls 118 (192)
T PF03158_consen 49 LLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQN---L--HIYNPEDIFDIAFAKKDLS 118 (192)
T ss_pred HHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhhc---c--CCCCchhhhhhhhhccchh
Confidence 477899999999999987754322 11127889999999999999999442 1 1122355677888888777
Q ss_pred H
Q 010335 93 V 93 (513)
Q Consensus 93 i 93 (513)
+
T Consensus 119 L 119 (192)
T PF03158_consen 119 L 119 (192)
T ss_pred H
Confidence 6
No 152
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.0063 Score=58.34 Aligned_cols=42 Identities=24% Similarity=0.440 Sum_probs=37.5
Q ss_pred CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
.|-||.+.....+.|++ | .-+|+.| |++++.|||||+.|.|-
T Consensus 302 LC~ICmDaP~DCvfLeCGH----------mVtCt~C----Gkrm~eCPICRqyi~rv 344 (350)
T KOG4275|consen 302 LCAICMDAPRDCVFLECGH----------MVTCTKC----GKRMNECPICRQYIVRV 344 (350)
T ss_pred HHHHHhcCCcceEEeecCc----------EEeehhh----ccccccCchHHHHHHHH
Confidence 59999999999999998 4 3789999 99999999999999874
No 153
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=93.84 E-value=0.05 Score=40.57 Aligned_cols=44 Identities=11% Similarity=0.038 Sum_probs=35.9
Q ss_pred cchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 319 TCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 319 ~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
.|.||.+...+-+..+|||.+|.+|...+.... ..||+|+..+.
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~------------~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTYERRAIEKWLLSH------------GTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHC------------CCCCCCcCCCC
Confidence 588899887777888999999999998887541 25999998763
No 154
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.035 Score=55.08 Aligned_cols=49 Identities=22% Similarity=0.626 Sum_probs=38.0
Q ss_pred cccccchhhhcc-cce------------EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 315 DDADTCAVCLER-ACT------------VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 315 ~~~~~C~iC~~~-~~~------------v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
.....|.||+|. .-+ -.-.||||-+-.+|...++.+.. .|||||.+++-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ------------TCPICr~p~if 346 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ------------TCPICRRPVIF 346 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc------------CCCcccCcccc
Confidence 456899999986 211 26679999999999999987643 49999999553
No 155
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=93.61 E-value=0.027 Score=51.72 Aligned_cols=52 Identities=13% Similarity=0.411 Sum_probs=39.5
Q ss_pred CCCCCCCccccceeeecCC-CCccccccccccccCccccCCC----------------CCCCCCCCCCchhhcccccccc
Q 010335 363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHT----------------RDAECESPACAPEIRKNRVALV 425 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 425 (513)
...||||.+.+..-+..++ | .||..|...- .+....||+||.+|...-+.++
T Consensus 18 ~~~CpICld~~~dPVvT~CGH-----------~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi 86 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGH-----------LFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI 86 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCc-----------hhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence 4469999999888877777 8 9999998531 1124589999999988655444
No 156
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=0.019 Score=55.34 Aligned_cols=55 Identities=22% Similarity=0.459 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccccccc
Q 010335 359 GPPGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVAL 424 (513)
Q Consensus 359 ~~~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (513)
.|+....|.+|......-...|| | -||-+|..+--+.-.+||+||.++..+.++-
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGH-----------iFCWsCI~~w~~ek~eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGH-----------IFCWSCILEWCSEKAECPLCREKFQPSKVIC 290 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcc-----------hHHHHHHHHHHccccCCCcccccCCCcceee
Confidence 34444579999999999999999 9 9999999888777778999999998886653
No 157
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=93.29 E-value=0.56 Score=43.99 Aligned_cols=115 Identities=12% Similarity=0.126 Sum_probs=81.4
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCChHHHHHHHc
Q 010335 13 RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY----CGQTALMQACRY 88 (513)
Q Consensus 13 ~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~----~g~TpLh~A~~~ 88 (513)
.|-.|+..-|++.+..+....-+. .++|-+|..++.-+++.+|+.+ ..+..+|- .+.--+.|+...
T Consensus 156 sledAV~AsN~~~i~~~VtdKkdA---------~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~ 225 (284)
T PF06128_consen 156 SLEDAVKASNYEEISNLVTDKKDA---------HQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSE 225 (284)
T ss_pred cHHHHHhhcCHHHHHHHhcchHHH---------HHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhh
Confidence 367788888888888877644222 6889999999999999999975 22222221 133345555443
Q ss_pred --CCHHHHHHHHhcCC-CCCcc--cCCCCCcHHHHHHHcCCHHHHHHHHHccCC
Q 010335 89 --GHWEVVQTLLLFRC-NVTRA--DYLSGRTALHFAAVNGHVRCIRLVVADFVP 137 (513)
Q Consensus 89 --g~~eiVk~LL~~ga-~~~~~--~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~ 137 (513)
.+..++++++..|- +++.. .-+.|.|-|.-|+.+++.+++.+|+.+|+.
T Consensus 226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 36778899998873 44422 223799999999999999999999988763
No 158
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=93.28 E-value=0.054 Score=51.98 Aligned_cols=54 Identities=28% Similarity=0.565 Sum_probs=39.6
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 381 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 381 (513)
+....|.||-++...-...+|||.+|.-|...-..+ +..||+||.+.. ++.+++
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~------------qp~CP~Cr~~~~-esrlr~ 76 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT------------QPFCPVCREDPC-ESRLRG 76 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhcC------------CCCCccccccHH-hhhccc
Confidence 345789999999999999999999988777554322 346999996643 233444
No 159
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.058 Score=54.21 Aligned_cols=46 Identities=33% Similarity=0.675 Sum_probs=33.5
Q ss_pred ccchhhhccc---ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 318 DTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 318 ~~C~iC~~~~---~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
+.|.||+|.. --+..+||.|.+...|--.+.... ...||+|++.|-
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-----------r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-----------RTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-----------CccCCCCCCcCC
Confidence 5999999854 456889999998777775554332 125999998543
No 160
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.56 E-value=0.063 Score=38.51 Aligned_cols=46 Identities=20% Similarity=0.507 Sum_probs=34.1
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
.....|..|......-...||||..|..|- ..++.+. ||+|-.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f----~~~rYng----------CPfC~~~~~ 50 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCF----PGERYNG----------CPFCGTPFE 50 (55)
T ss_pred ccceeEEEccccccccccccccceeecccc----ChhhccC----------CCCCCCccc
Confidence 345677788887777788899999998876 3333333 999998765
No 161
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=0.08 Score=51.31 Aligned_cols=47 Identities=28% Similarity=0.586 Sum_probs=35.7
Q ss_pred ccccchhhhcccc---eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335 316 DADTCAVCLERAC---TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 373 (513)
Q Consensus 316 ~~~~C~iC~~~~~---~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i 373 (513)
....|.||+.... -+.+.||.|++...|.-.+-..- +..||+||.+|
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y-----------~~~CPvCrt~i 371 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGY-----------SNKCPVCRTAI 371 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhh-----------cccCCccCCCC
Confidence 3478999997553 35888999999999987775431 23699999775
No 162
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=92.10 E-value=0.28 Score=38.27 Aligned_cols=49 Identities=31% Similarity=0.339 Sum_probs=34.1
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN 67 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~ 67 (513)
+.+.|..|+..|+.|+++.+++.+ ... ...|..|+..-+.++++||+++
T Consensus 6 t~~tl~~Ai~GGN~eII~~c~~~~-~~~--------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 6 TKKTLEYAIIGGNFEIINICLKKN-KPD--------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHh-ccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence 456677788888888888777654 111 3467777777778888887775
No 163
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=91.90 E-value=0.013 Score=40.52 Aligned_cols=39 Identities=23% Similarity=0.550 Sum_probs=31.0
Q ss_pred CCCCCccccc---eeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCc
Q 010335 365 PCPLCRHGIV---SFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACA 414 (513)
Q Consensus 365 ~Cp~Cr~~i~---~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~ 414 (513)
.||||...+. .++.+++ + .||..|....-+....||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H-----------~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGH-----------VFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSE-----------EEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCC-----------eeCHHHHHHHHHhCCcCCccC
Confidence 4999999884 6777877 7 899999877666677999997
No 164
>PHA02929 N1R/p28-like protein; Provisional
Probab=91.81 E-value=0.063 Score=51.41 Aligned_cols=44 Identities=18% Similarity=0.464 Sum_probs=33.8
Q ss_pred CCCCCCccccce-------eeec-CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhc
Q 010335 364 IPCPLCRHGIVS-------FTKL-PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIR 418 (513)
Q Consensus 364 ~~Cp~Cr~~i~~-------~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~ 418 (513)
..||+|...+.. +..+ +| | .||..|...-.+....||+||.++.
T Consensus 175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H-----------~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 175 KECAICMEKVYDKEIKNMYFGILSNCNH-----------VFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCccCCcccccCccccccceecCCCCC-----------cccHHHHHHHHhcCCCCCCCCCEee
Confidence 359999987653 2233 34 8 9999999877777889999998876
No 165
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=91.65 E-value=0.099 Score=51.38 Aligned_cols=48 Identities=27% Similarity=0.582 Sum_probs=38.4
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
+..-.|.||.+-+......||+|.+|--|.-.+... ...||.|+.++.
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~------------~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY------------KPQCPTCCVTVT 68 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc------------CCCCCceecccc
Confidence 456789999999998899999999998887666533 236999997764
No 166
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=0.092 Score=50.98 Aligned_cols=52 Identities=21% Similarity=0.452 Sum_probs=37.4
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceee
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT 377 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~ 377 (513)
....+|.||....---+..+|+|++|.-|..-.-.. +-..|++||.+|.+-.
T Consensus 5 ~~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n-----------dk~~CavCR~pids~i 56 (324)
T KOG0824|consen 5 TKKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKN-----------DKKTCAVCRFPIDSTI 56 (324)
T ss_pred ccCCcceeeeccCCcCccccccchhhhhhhcchhhc-----------CCCCCceecCCCCcch
Confidence 346789999987665588899999998776332211 2234999999998643
No 167
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=0.096 Score=52.15 Aligned_cols=46 Identities=30% Similarity=0.718 Sum_probs=37.9
Q ss_pred ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcc
Q 010335 314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRH 371 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~ 371 (513)
..+.-.|.||++....-...+|||.+|..|...+.. ....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~------------~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE------------GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC------------CCcCCcccCC
Confidence 346788999999888779999999999999977754 1247999994
No 168
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=91.24 E-value=0.095 Score=36.15 Aligned_cols=39 Identities=15% Similarity=0.426 Sum_probs=29.8
Q ss_pred CCCCcccc---ceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCch
Q 010335 366 CPLCRHGI---VSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAP 415 (513)
Q Consensus 366 Cp~Cr~~i---~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~ 415 (513)
|++|.... ..+..+++ | .+|..|.....+....||+||+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH-----------~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGH-----------IFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCC-----------HHHHHHHHhhcCCCCCCcCCCC
Confidence 88888777 34455555 8 8999998777666789999974
No 169
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.07 E-value=0.058 Score=58.85 Aligned_cols=47 Identities=26% Similarity=0.569 Sum_probs=40.1
Q ss_pred ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335 316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 373 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i 373 (513)
..-.|.+|..++-+++..-|||.||..|....-.++ .-.||.|-..+
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR-----------qRKCP~Cn~aF 688 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR-----------QRKCPKCNAAF 688 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh-----------cCCCCCCCCCC
Confidence 467899999999999999999999999998776663 34699998764
No 170
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=90.79 E-value=0.063 Score=36.44 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=29.4
Q ss_pred CCCCccccceeeecC-C-CCccccccccccccCccccCCCCCC-CCCCCCCchhh
Q 010335 366 CPLCRHGIVSFTKLP-G-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEI 417 (513)
Q Consensus 366 Cp~Cr~~i~~~~~~~-~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~ 417 (513)
|++|...+...+.++ + + .+|..|.....+. ...||.||.++
T Consensus 2 C~iC~~~~~~~~~~~~C~H-----------~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 2 CPICLEEFREPVVLLPCGH-----------VFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCcCchhhhCceEecCCCC-----------hhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 999999884443343 4 7 8999997655443 56799998764
No 171
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=90.76 E-value=0.24 Score=39.22 Aligned_cols=38 Identities=29% Similarity=0.658 Sum_probs=28.8
Q ss_pred cceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335 327 ACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 373 (513)
Q Consensus 327 ~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i 373 (513)
.+.++.-.|+|.+..+|.+....+... ...||.||+..
T Consensus 44 ~Cplv~g~C~H~FH~hCI~kWl~~~~~---------~~~CPmCR~~w 81 (85)
T PF12861_consen 44 DCPLVWGKCSHNFHMHCILKWLSTQSS---------KGQCPMCRQPW 81 (85)
T ss_pred CCceeeccCccHHHHHHHHHHHccccC---------CCCCCCcCCee
Confidence 456677789999999999988765321 23699999875
No 172
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=0.047 Score=48.96 Aligned_cols=45 Identities=20% Similarity=0.581 Sum_probs=37.6
Q ss_pred CCCCCccccceee---ecCCCCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 365 PCPLCRHGIVSFT---KLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~---~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
.||+|...+..-+ .=+|| -||-.|+.+-.+.-..||+|+++|...
T Consensus 133 ~CPiCl~~~sek~~vsTkCGH-----------vFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 133 KCPICLDSVSEKVPVSTKCGH-----------VFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred CCCceecchhhccccccccch-----------hHHHHHHHHHHHhCCCCCCcccccchh
Confidence 5999998777654 44679 999999999888999999999887664
No 173
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.67 E-value=0.11 Score=53.48 Aligned_cols=46 Identities=17% Similarity=0.409 Sum_probs=37.2
Q ss_pred CCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335 363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK 419 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 419 (513)
...||||...+..-+.+|| | .||..|..+.-.....||.||.++..
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH-----------~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSH-----------TFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccCCCcCchhhhCccCCCCCC-----------chhHHHHHHHHhCCCCCCCCCCcccc
Confidence 4579999998887777787 8 99999987654445589999998876
No 174
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=88.98 E-value=0.044 Score=36.70 Aligned_cols=37 Identities=22% Similarity=0.653 Sum_probs=27.8
Q ss_pred CCCCcccccee-eecCC-CCccccccccccccCccccCCCCCCCCCCCCC
Q 010335 366 CPLCRHGIVSF-TKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPAC 413 (513)
Q Consensus 366 Cp~Cr~~i~~~-~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~ 413 (513)
||||.+.+..- +.+++ | .||..|....-+....||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH-----------~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGH-----------SFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSE-----------EEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCC-----------chhHHHHHHHHHCcCCCcCC
Confidence 79999888887 56666 8 89999987765556788887
No 175
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.77 E-value=0.18 Score=50.34 Aligned_cols=64 Identities=28% Similarity=0.647 Sum_probs=46.7
Q ss_pred ccchhhhcccceE------EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCCCcccccccc
Q 010335 318 DTCAVCLERACTV------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPL 391 (513)
Q Consensus 318 ~~C~iC~~~~~~v------~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~~~~~~~~~~ 391 (513)
..|.||-+..... ....|||.+|..|+-.+... ..+.||+||... .++...++.|.++.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~-----------~~i~cpfcR~~~----~~~~~~~~~l~kNf 68 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN-----------SRILCPFCRETT----EIPDGDVKSLQKNF 68 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcC-----------ceeeccCCCCcc----cCCchhHhhhhhhH
Confidence 4566776543332 44459999999999888755 456799999886 77777777788877
Q ss_pred ccccC
Q 010335 392 SLGLC 396 (513)
Q Consensus 392 ~~~~c 396 (513)
++.-.
T Consensus 69 ~ll~~ 73 (296)
T KOG4185|consen 69 ALLQA 73 (296)
T ss_pred HHHHH
Confidence 76654
No 176
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.76 E-value=0.23 Score=49.12 Aligned_cols=55 Identities=15% Similarity=0.451 Sum_probs=44.1
Q ss_pred CccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 313 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
...+.+.|.||..++.+.++.||+|.-|..|..+-.-. .+.|-+|+..|......
T Consensus 418 p~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN------------~k~CFfCktTv~~~~ld 472 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN------------CKRCFFCKTTVIDVILD 472 (489)
T ss_pred CCcccccCcceecccchhhccCCCCchHHHHHHHHHhc------------CCeeeEecceeeehhcc
Confidence 34577899999999999999999999999998665322 23699999988874443
No 177
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.72 E-value=0.22 Score=51.37 Aligned_cols=51 Identities=25% Similarity=0.625 Sum_probs=38.5
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceee
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT 377 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~ 377 (513)
...-.|.||.+..-..+-.||||.+|..|..+.... ...||.||+++..+.
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~------------~~~cp~Cr~~l~e~~ 132 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ------------ETECPLCRDELVELP 132 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc------------CCCCcccccccccch
Confidence 345789999987777777799999999997663221 225999999988643
No 178
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=88.64 E-value=0.77 Score=35.73 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=23.8
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhc
Q 010335 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF 100 (513)
Q Consensus 47 TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ 100 (513)
.-|..|+..|+.||++.+++.+ .++ ...|..|+..-+.+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 3455555555555555555433 111 2345555555555555555543
No 179
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=87.23 E-value=0.78 Score=40.58 Aligned_cols=19 Identities=32% Similarity=0.812 Sum_probs=16.2
Q ss_pred CCCCCCCccccceeeecCC
Q 010335 363 SIPCPLCRHGIVSFTKLPG 381 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~~~ 381 (513)
...||+||..|.+|+.+-.
T Consensus 80 ~L~CPLCRG~V~GWtvve~ 98 (162)
T PF07800_consen 80 ELACPLCRGEVKGWTVVEP 98 (162)
T ss_pred cccCccccCceeceEEchH
Confidence 4579999999999988754
No 180
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.22 E-value=0.25 Score=48.89 Aligned_cols=47 Identities=26% Similarity=0.592 Sum_probs=34.1
Q ss_pred CCCCCccccc--e----eeecCCCCccccccccccccCccccCCC-CCCCCCCCCCchhhccccc
Q 010335 365 PCPLCRHGIV--S----FTKLPGSPVKDIKQPLSLGLCTPCMLHT-RDAECESPACAPEIRKNRV 422 (513)
Q Consensus 365 ~Cp~Cr~~i~--~----~~~~~~~~~~~~~~~~~~~~c~~c~~~~-~~~~~~~~~~~~~~~~~~~ 422 (513)
.||+|..... . ++.-+|| .+|..|.... .....+||.|+.+++++.+
T Consensus 5 ~CP~Ck~~~y~np~~kl~i~~CGH-----------~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 5 GCPRCKTTKYRNPSLKLMVNVCGH-----------TLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCcCCCCCccCcccccccCCCCC-----------cccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 4999997422 1 2233558 9999998774 3456799999999999763
No 181
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.93 E-value=0.29 Score=46.00 Aligned_cols=50 Identities=30% Similarity=0.588 Sum_probs=40.1
Q ss_pred CCCCCcccccee-eecCCCCccccccccccccCcccc---CCCCCCCCCCCCCchhhcccccccc
Q 010335 365 PCPLCRHGIVSF-TKLPGSPVKDIKQPLSLGLCTPCM---LHTRDAECESPACAPEIRKNRVALV 425 (513)
Q Consensus 365 ~Cp~Cr~~i~~~-~~~~~~~~~~~~~~~~~~~c~~c~---~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (513)
.|=||.+....= +.++|| .||-+|. ++.+...+.||.||.+|....|.++
T Consensus 49 dCNICLd~akdPVvTlCGH-----------LFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 49 DCNICLDLAKDPVVTLCGH-----------LFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred eeeeeccccCCCEEeeccc-----------ceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 488888666554 556669 9999997 5666678899999999999888776
No 182
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=85.74 E-value=0.15 Score=34.78 Aligned_cols=37 Identities=24% Similarity=0.670 Sum_probs=25.9
Q ss_pred CCCCccccceeeecCC-CCccccccccccccCccccCCCCCC----CCCCCCC
Q 010335 366 CPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA----ECESPAC 413 (513)
Q Consensus 366 Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~----~~~~~~~ 413 (513)
||||.+-+..=+.|++ | .||..|.....+. ...||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH-----------~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGH-----------SFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSS-----------EEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcC-----------HHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999998 8 9999998665432 1468876
No 183
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=84.54 E-value=0.22 Score=32.32 Aligned_cols=37 Identities=24% Similarity=0.667 Sum_probs=27.5
Q ss_pred CCCCccccceeeecCC-CCccccccccccccCccccCCCCC-CCCCCCCC
Q 010335 366 CPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD-AECESPAC 413 (513)
Q Consensus 366 Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~ 413 (513)
||+|.......+.+|+ + .+|..|....-+ ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H-----------~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGH-----------TFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCC-----------hHHHHHHHHHHHhCcCCCCCC
Confidence 7899988888888887 7 789999654433 34567776
No 184
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.49 E-value=0.39 Score=52.33 Aligned_cols=44 Identities=25% Similarity=0.591 Sum_probs=38.0
Q ss_pred ccccchhhhcccce-----EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcc
Q 010335 316 DADTCAVCLERACT-----VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRH 371 (513)
Q Consensus 316 ~~~~C~iC~~~~~~-----v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~ 371 (513)
..+.|.||.|.... ....+|||.++..|...+....+ .||+||.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q------------tCP~CR~ 338 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ------------TCPTCRT 338 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC------------cCCcchh
Confidence 47899999998777 68889999999999999986643 3999998
No 185
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=84.40 E-value=0.28 Score=36.44 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=35.2
Q ss_pred CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
.||+|...+..=+.+|+ + .+|..|....-+....||+|+.++...
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~-----------v~~~~~i~~~~~~~~~cP~~~~~~~~~ 48 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQ-----------TYERRAIEKWLLSHGTDPVTGQPLTHE 48 (63)
T ss_pred CCcCCCCcCCCCEECCCCC-----------EEeHHHHHHHHHHCCCCCCCcCCCChh
Confidence 59999998888777775 6 888888776544467899999887554
No 186
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.27 E-value=0.66 Score=43.67 Aligned_cols=41 Identities=24% Similarity=0.496 Sum_probs=33.8
Q ss_pred CCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 366 CPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 366 Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
|-.|+..-..+..+|+ | |.+|.+| ......||+|+.++..+
T Consensus 161 Cr~C~~~~~~VlllPCrH----------l~lC~~C----~~~~~~CPiC~~~~~s~ 202 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRH----------LCLCGIC----DESLRICPICRSPKTSS 202 (207)
T ss_pred ceecCcCCceEEeecccc----------eEecccc----cccCccCCCCcChhhce
Confidence 9999999999999999 4 6899999 33366799999877644
No 187
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.69 E-value=0.52 Score=44.67 Aligned_cols=47 Identities=28% Similarity=0.655 Sum_probs=31.9
Q ss_pred ccchhhhcccc--eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeee
Q 010335 318 DTCAVCLERAC--TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTK 378 (513)
Q Consensus 318 ~~C~iC~~~~~--~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~ 378 (513)
..|..|..... ..+...|+|.+|..|.-.- .|+ .||+|+..|-.+.-
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~-----------~~~---~C~lCkk~ir~i~l 52 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS-----------SPD---VCPLCKKSIRIIQL 52 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccC-----------Ccc---ccccccceeeeeec
Confidence 45777775544 4488999999999998111 111 69999999544433
No 188
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=83.26 E-value=0.15 Score=34.35 Aligned_cols=37 Identities=24% Similarity=0.682 Sum_probs=29.4
Q ss_pred CCCCccccceee-ecCC-CCccccccccccccCccccCCCCC--CCCCCCCC
Q 010335 366 CPLCRHGIVSFT-KLPG-SPVKDIKQPLSLGLCTPCMLHTRD--AECESPAC 413 (513)
Q Consensus 366 Cp~Cr~~i~~~~-~~~~-~~~~~~~~~~~~~~c~~c~~~~~~--~~~~~~~~ 413 (513)
||+|........ .+++ | .||..|.....+ ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H-----------~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGH-----------SFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSE-----------EEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCC-----------cchHHHHHHHHHhcCCccCCcC
Confidence 789998888887 7777 8 899999876654 46678876
No 189
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.96 E-value=0.54 Score=51.34 Aligned_cols=87 Identities=18% Similarity=0.393 Sum_probs=58.2
Q ss_pred ccccchhhhcccceE---EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC---------C
Q 010335 316 DADTCAVCLERACTV---AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS---------P 383 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v---~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~---------~ 383 (513)
....|.+|+....+- .-.+|+|.+|..|.-.++.... .||+||..+..++.+-.. |
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq------------TCPiDR~EF~~v~V~eS~~~~~~vR~lP 189 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ------------TCPVDRGEFGEVKVLESTGIEANVRCLP 189 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc------------cCchhhhhhheeeeeccccccceeEecc
Confidence 457788888766544 5579999999999998876543 499999988877666551 2
Q ss_pred cccccccc----------------ccccCccccCCCCC-CCCCCCCCc
Q 010335 384 VKDIKQPL----------------SLGLCTPCMLHTRD-AECESPACA 414 (513)
Q Consensus 384 ~~~~~~~~----------------~~~~c~~c~~~~~~-~~~~~~~~~ 414 (513)
+.|-++++ ...-|-.|..+-.+ .+.-|-.|-
T Consensus 190 ~EEs~~~~e~~~d~~~d~~~~~~~E~~~C~IC~~~DpEdVLLLCDsCN 237 (1134)
T KOG0825|consen 190 SEESENILEKGGDEKQDQISGLSQEEVKCDICTVHDPEDVLLLCDSCN 237 (1134)
T ss_pred hhhhhhhhhhccccccccccCcccccccceeeccCChHHhheeecccc
Confidence 22222222 23567777655544 566777774
No 190
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.71 E-value=1.6 Score=42.15 Aligned_cols=55 Identities=24% Similarity=0.516 Sum_probs=38.7
Q ss_pred CccccccchhhhcccceEE-eeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceee
Q 010335 313 SSDDADTCAVCLERACTVA-AEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT 377 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v~-~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~ 377 (513)
..+...+|.+|.+.+..-+ ..+|||..|.-|.-.-+..+ -+-.||.|-..+..+.
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~----------asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD----------ASFTCPLCGENVEPLQ 290 (298)
T ss_pred cccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcch----------hhcccCccCCCCcchh
Confidence 4456789999999887664 44599999999984444321 1235999997766554
No 191
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.95 E-value=0.46 Score=49.66 Aligned_cols=51 Identities=27% Similarity=0.630 Sum_probs=39.1
Q ss_pred CCCCCcc-ccceeeecCCCCccccccccccccCccccCCCCC-----CCCCCCCCchhhccccccccc
Q 010335 365 PCPLCRH-GIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRD-----AECESPACAPEIRKNRVALVS 426 (513)
Q Consensus 365 ~Cp~Cr~-~i~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 426 (513)
.||||.. +.+-.+-.+|| -||-+|...+-. .-..||+|+..|..+.+.+|-
T Consensus 188 ~CPICL~~~~~p~~t~CGH-----------iFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 188 QCPICLEPPSVPVRTNCGH-----------IFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred cCCcccCCCCcccccccCc-----------eeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 6999994 44445555889 999999876533 356899999999998887764
No 192
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=79.85 E-value=0.88 Score=35.15 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=39.7
Q ss_pred cccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCCCc
Q 010335 317 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV 384 (513)
Q Consensus 317 ~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~~~ 384 (513)
.-.|.|+.+-..+-+..++||.++..|.+...... ...||+|+..+..-..+|...+
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~-----------~~~~P~t~~~l~~~~l~pn~~L 60 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQN-----------GGTDPFTRQPLSESDLIPNRAL 60 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT-----------SSB-TTT-SB-SGGGSEE-HHH
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC-----------CCCCCCCCCcCCcccceECHHH
Confidence 45789999999999999999999999998887551 2359999988877666665433
No 193
>PHA02926 zinc finger-like protein; Provisional
Probab=79.38 E-value=0.43 Score=44.59 Aligned_cols=44 Identities=25% Similarity=0.497 Sum_probs=30.1
Q ss_pred CCCCCCccccce--------eeec-CC-CCccccccccccccCccccCCCCC------CCCCCCCCchhhc
Q 010335 364 IPCPLCRHGIVS--------FTKL-PG-SPVKDIKQPLSLGLCTPCMLHTRD------AECESPACAPEIR 418 (513)
Q Consensus 364 ~~Cp~Cr~~i~~--------~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~~~------~~~~~~~~~~~~~ 418 (513)
..|++|...+.. |-.| +| | .||..|...-++ ....||+||..+.
T Consensus 171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnH-----------sFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 171 KECGICYEVVYSKRLENDRYFGLLDSCNH-----------IFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCccCccccccccccccccccccCCCCc-----------hHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 469999977632 2233 23 7 899999865443 2456999999765
No 194
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.54 E-value=0.91 Score=44.18 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=39.9
Q ss_pred cccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 317 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 317 ~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
...|.||..-+-.-+...|||.+|..|++.=-.+ ...|++|-+.+.+....
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk------------~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK------------GEKCYVCSQQTHGSFNV 291 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc------------CCcceecccccccccch
Confidence 4569999998888888899999999999554333 12599999988876544
No 195
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=77.43 E-value=1.5 Score=49.04 Aligned_cols=51 Identities=24% Similarity=0.618 Sum_probs=37.1
Q ss_pred ccccccchhhhc-------ccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 314 SDDADTCAVCLE-------RACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 314 ~~~~~~C~iC~~-------~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
.+..++|.||.. ....-.+.-|.|.+.++|...+-... ++-.||+||.+|.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss----------~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASS----------ARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhc----------CCCCCCccccccc
Confidence 457899999983 23344777899999999998886543 2235999997764
No 196
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=77.40 E-value=1.3 Score=33.00 Aligned_cols=42 Identities=26% Similarity=0.691 Sum_probs=18.6
Q ss_pred cccchhhhcccceE-EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccc
Q 010335 317 ADTCAVCLERACTV-AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHG 372 (513)
Q Consensus 317 ~~~C~iC~~~~~~v-~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~ 372 (513)
.-.|.+|.+-.... -...|.|.+|-.|.-.... + .||+|+.+
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-----~---------~CPvC~~P 49 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-----S---------ECPVCHTP 49 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT-----T---------B-SSS--B
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-----C---------CCCCcCCh
Confidence 34678888765554 4689999999998843221 1 39999843
No 197
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.90 E-value=1.5 Score=44.35 Aligned_cols=56 Identities=23% Similarity=0.574 Sum_probs=39.5
Q ss_pred cccccchhhhcccceEE-----e---eCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 315 DDADTCAVCLERACTVA-----A---EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~-----~---~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
.....|.||++...... + .+|-|.+|.+|.-..-..... ....+.-||+||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~-----~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQF-----ESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcc-----ccccccCCCcccCcccc
Confidence 46789999998766655 4 679999999999776544332 11224469999977554
No 198
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.88 E-value=0.92 Score=45.47 Aligned_cols=42 Identities=29% Similarity=0.512 Sum_probs=34.3
Q ss_pred CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
.|.+|-..-.++..+|+ + +..|+.|+.+.. +||+||.-|+.-
T Consensus 307 lcVVcl~e~~~~~fvpcGh----------~ccct~cs~~l~----~CPvCR~rI~~~ 349 (355)
T KOG1571|consen 307 LCVVCLDEPKSAVFVPCGH----------VCCCTLCSKHLP----QCPVCRQRIRLV 349 (355)
T ss_pred ceEEecCCccceeeecCCc----------EEEchHHHhhCC----CCchhHHHHHHH
Confidence 59999999999999999 4 266889955544 499999988764
No 199
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.85 E-value=0.39 Score=52.33 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=39.3
Q ss_pred CCCCCccccce-----eeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccccc
Q 010335 365 PCPLCRHGIVS-----FTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRV 422 (513)
Q Consensus 365 ~Cp~Cr~~i~~-----~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~ 422 (513)
.|+||+..... ..++|| | .|+..|-..--++.+.||+||.++..+++
T Consensus 293 ~C~IC~e~l~~~~~~~~~rL~C~H-----------ifh~~CL~~W~er~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 293 LCIICLEELHSGHNITPKRLPCGH-----------IFHDSCLRSWFERQQTCPTCRTVLYDYVL 345 (543)
T ss_pred eeeeechhhccccccccceeeccc-----------chHHHHHHHHHHHhCcCCcchhhhhcccc
Confidence 59999999998 788888 8 88989965555579999999998877654
No 200
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.77 E-value=0.89 Score=43.58 Aligned_cols=49 Identities=20% Similarity=0.374 Sum_probs=38.2
Q ss_pred CCCCCCCccccceeeecCC-CCccccccccccccCccccCC-CCCCC-CCCCCCchhhccccc
Q 010335 363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLH-TRDAE-CESPACAPEIRKNRV 422 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~-~~~~~-~~~~~~~~~~~~~~~ 422 (513)
.-.|++|..........|+ | .||-.|..- ..+.. .-||+||+.+.-..+
T Consensus 215 d~kC~lC~e~~~~ps~t~CgH-----------lFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGH-----------LFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeecccCCcccccccc-----------hhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 3359999999999988888 8 999999776 34444 459999998876544
No 201
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=74.49 E-value=0.67 Score=45.77 Aligned_cols=46 Identities=15% Similarity=0.378 Sum_probs=37.2
Q ss_pred CCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335 363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK 419 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 419 (513)
...|-||...+..-+-.|| | .||..|+-.+-.---+||.|+.+|+-
T Consensus 23 lLRC~IC~eyf~ip~itpCsH-----------tfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSH-----------TFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHhcCceeccccc-----------hHHHHHHHHHhccCCCCCceecccch
Confidence 3459999988777777788 7 89999976666566799999998876
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.52 E-value=2.4 Score=43.72 Aligned_cols=71 Identities=27% Similarity=0.587 Sum_probs=47.3
Q ss_pred Cccccccchhhhcccc----eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCCCccccc
Q 010335 313 SSDDADTCAVCLERAC----TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIK 388 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~----~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~~~~~~~ 388 (513)
...+...|.||++|.- -+....|-|.+-..|....-.. .||+||-. ..|+
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~--------------scpvcR~~-----q~p~------- 224 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS--------------SCPVCRYC-----QSPS------- 224 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC--------------cChhhhhh-----cCcc-------
Confidence 4567889999998753 3478899999877887555322 39999943 3343
Q ss_pred cccccccCccccCCCCCC--CCCCCCCc
Q 010335 389 QPLSLGLCTPCMLHTRDA--ECESPACA 414 (513)
Q Consensus 389 ~~~~~~~c~~c~~~~~~~--~~~~~~~~ 414 (513)
.+.-..|..| +.+ .-.|.+|-
T Consensus 225 -~ve~~~c~~c----~~~~~LwicliCg 247 (493)
T KOG0804|consen 225 -VVESSLCLAC----GCTEDLWICLICG 247 (493)
T ss_pred -hhhhhhhhhh----cccccEEEEEEcc
Confidence 1223567777 544 44788774
No 203
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.40 E-value=1.5 Score=42.94 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=37.6
Q ss_pred CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCC-CCCCCchhhccccc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAEC-ESPACAPEIRKNRV 422 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~-~~~~~~~~~~~~~~ 422 (513)
-|+||.+.-.-=+.+++ | -||+.|..---..++ .|+.||.||.-++.
T Consensus 9 eC~IC~nt~n~Pv~l~C~H-----------kFCyiCiKGsy~ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFH-----------KFCYICIKGSYKNDKKTCAVCRFPIDSTID 57 (324)
T ss_pred cceeeeccCCcCccccccc-----------hhhhhhhcchhhcCCCCCceecCCCCcchh
Confidence 49999977666688888 8 899999765555555 59999999988765
No 204
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=73.25 E-value=2.2 Score=42.50 Aligned_cols=50 Identities=24% Similarity=0.431 Sum_probs=37.6
Q ss_pred Cccccccchhhhccc-ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceee
Q 010335 313 SSDDADTCAVCLERA-CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT 377 (513)
Q Consensus 313 s~~~~~~C~iC~~~~-~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~ 377 (513)
...+.-.|.||.+.. ..++.-+-||.+|..|...+- ..||.||.+|..++
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~---------------~~CP~Cr~~~g~~R 94 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS---------------NKCPTCRLPIGNIR 94 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhhc---------------ccCCccccccccHH
Confidence 556788999999865 445665679999999985442 24999999988653
No 205
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=72.80 E-value=1.6 Score=43.54 Aligned_cols=43 Identities=19% Similarity=0.423 Sum_probs=34.3
Q ss_pred CCCCCCccccceeeecCC--CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 364 IPCPLCRHGIVSFTKLPG--SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 364 ~~Cp~Cr~~i~~~~~~~~--~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
.-||+|.+.|..=...+. | ..|..|.. +..+.||.||-++-+.
T Consensus 49 leCPvC~~~l~~Pi~QC~nGH-----------laCssC~~---~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 49 LDCPVCFNPLSPPIFQCDNGH-----------LACSSCRT---KVSNKCPTCRLPIGNI 93 (299)
T ss_pred ccCchhhccCcccceecCCCc-----------Eehhhhhh---hhcccCCccccccccH
Confidence 359999999887666665 7 78888832 6789999999988864
No 206
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.31 E-value=0.87 Score=45.39 Aligned_cols=54 Identities=31% Similarity=0.676 Sum_probs=37.7
Q ss_pred cccccchhhhcccc-eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 315 DDADTCAVCLERAC-TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 315 ~~~~~C~iC~~~~~-~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
.....|.||++... ++-...|+|.+|..|.+.--.. +-.-||-||...++=+.|
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-----------gn~ecptcRk~l~SkrsL 95 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-----------GNNECPTCRKKLVSKRSL 95 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-----------cCCCCchHHhhccccccC
Confidence 34678999998543 3355689999999998665433 122599999887654444
No 207
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=70.05 E-value=1.2 Score=42.96 Aligned_cols=49 Identities=16% Similarity=0.403 Sum_probs=36.2
Q ss_pred CCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccccc
Q 010335 363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRV 422 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~ 422 (513)
...|-||...|..-.--+| | +||..|+-.--..---||.||.+.+-.|.
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgH-----------tFCslCIR~hL~~qp~CP~Cr~~~~esrl 74 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGH-----------TFCSLCIRRHLGTQPFCPVCREDPCESRL 74 (391)
T ss_pred HHHhhhhhheeecceeccccc-----------chhHHHHHHHhcCCCCCccccccHHhhhc
Confidence 4469999877665555555 7 99999976554456689999999887654
No 208
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=68.82 E-value=2.8 Score=49.08 Aligned_cols=60 Identities=23% Similarity=0.593 Sum_probs=44.3
Q ss_pred ccccccchhhhcc---cceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 314 SDDADTCAVCLER---ACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 314 ~~~~~~C~iC~~~---~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
.+..+.|+||+-. .++.....|+|.+-.+|-..+...++..+-. .-+-+.||+|.++|.-
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRI--tF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRI--TFGFISCPICKNKINH 3545 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCee--EEeeeecccccchhhh
Confidence 3457889999964 4555778999999888888888887764311 1146789999999863
No 209
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=66.34 E-value=2.5 Score=38.57 Aligned_cols=52 Identities=17% Similarity=0.409 Sum_probs=38.5
Q ss_pred ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
-.-.|.||.......++..|||.+|..|+..--.+. | .|-+|-....+...+
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg--------~----~C~~Cgk~t~G~f~V 246 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG--------D----ECGVCGKATYGRFWV 246 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhccC--------C----cceecchhhccceeH
Confidence 345899999988888888999999999995443321 1 499998776655444
No 210
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=65.21 E-value=2.4 Score=46.58 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=17.8
Q ss_pred ccCccccCCCCCCCCCCCCCchhhccccc
Q 010335 394 GLCTPCMLHTRDAECESPACAPEIRKNRV 422 (513)
Q Consensus 394 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~ 422 (513)
.||..|..--....+.||+||.+|.+-+|
T Consensus 147 ~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 147 YFCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred ccHHHHhhhhhhhcccCchhhhhhheeee
Confidence 55555544444456777888877777544
No 211
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=64.89 E-value=2.8 Score=46.65 Aligned_cols=53 Identities=26% Similarity=0.652 Sum_probs=40.2
Q ss_pred ccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335 318 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 381 (513)
Q Consensus 318 ~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 381 (513)
..|.+|.+ ....+..+|||.+|..|....-.... .-+||+||..+..-..+-.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~----------~~~~~~cr~~l~~~~l~s~ 507 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE----------NAPCPLCRNVLKEKKLLSA 507 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhcccccc----------CCCCcHHHHHHHHHHHhhc
Confidence 78999999 77778889999999999955532211 1169999998886655554
No 212
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=63.81 E-value=3.4 Score=40.91 Aligned_cols=50 Identities=28% Similarity=0.580 Sum_probs=35.0
Q ss_pred Cccccccchhhhcccc--e--EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335 313 SSDDADTCAVCLERAC--T--VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 373 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~--~--v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i 373 (513)
++++.+.|..|.+..- + ...-+||...|.=|.-.+-..-+ ..||.||...
T Consensus 10 sedeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~ln-----------grcpacrr~y 63 (480)
T COG5175 10 SEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLN-----------GRCPACRRKY 63 (480)
T ss_pred cccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhcc-----------CCChHhhhhc
Confidence 7788889999998543 2 24446788888888876654422 1599999654
No 213
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.71 E-value=4 Score=41.27 Aligned_cols=51 Identities=22% Similarity=0.541 Sum_probs=34.1
Q ss_pred cccchhhhcccceE---EeeC-CCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC
Q 010335 317 ADTCAVCLERACTV---AAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 382 (513)
Q Consensus 317 ~~~C~iC~~~~~~v---~~~~-Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~ 382 (513)
.-.|.||.+....+ ...+ |||.+-..|...+-... +++ --||+|+ .++|.+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~------Ps~---R~cpic~------ik~~~r 58 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGD------PSN---RGCPICQ------IKLQER 58 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccC------Ccc---CCCCcee------ecccce
Confidence 35789998766544 5555 99999888887775442 111 2499999 455553
No 214
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=63.19 E-value=5.6 Score=27.96 Aligned_cols=31 Identities=23% Similarity=0.495 Sum_probs=15.5
Q ss_pred EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccc
Q 010335 331 AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHG 372 (513)
Q Consensus 331 ~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~ 372 (513)
..=+||+..|..|...+... +...||-||.+
T Consensus 16 ~PC~Cgf~IC~~C~~~i~~~-----------~~g~CPgCr~~ 46 (48)
T PF14570_consen 16 YPCECGFQICRFCYHDILEN-----------EGGRCPGCREP 46 (48)
T ss_dssp -SSTTS----HHHHHHHTTS-----------S-SB-TTT--B
T ss_pred ccCcCCCcHHHHHHHHHHhc-----------cCCCCCCCCCC
Confidence 33467888999999888643 12369999975
No 215
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=61.27 E-value=3.2 Score=40.62 Aligned_cols=49 Identities=22% Similarity=0.520 Sum_probs=32.2
Q ss_pred cccchhhhcccce-EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 317 ADTCAVCLERACT-VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 317 ~~~C~iC~~~~~~-v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
.-.|..|---... -..+||.|.+|.+||..-- .+.||.|-+.|-++..+
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~--------------dK~Cp~C~d~VqrIeq~ 139 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSDS--------------DKICPLCDDRVQRIEQI 139 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcCc--------------cccCcCcccHHHHHHHh
Confidence 3455555432222 2778999999999993221 23599999888766544
No 216
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=59.30 E-value=4.6 Score=21.85 Aligned_cols=14 Identities=21% Similarity=0.729 Sum_probs=11.1
Q ss_pred cccccccccccccc
Q 010335 486 LERTTCSSMFWGRR 499 (513)
Q Consensus 486 ~~~~~~~~~~~~~~ 499 (513)
.+|+-|..+||--+
T Consensus 2 ~~k~~CknffWK~~ 15 (18)
T PF03002_consen 2 ERKAGCKNFFWKTF 15 (18)
T ss_pred cccccccceeeccc
Confidence 46788999999654
No 217
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.00 E-value=7.1 Score=37.81 Aligned_cols=46 Identities=20% Similarity=0.456 Sum_probs=33.7
Q ss_pred CCCCCCCCc-cccceeeecCC-CCccccccccccccCccccCCCCC--CCCCCCCCchhhc
Q 010335 362 GSIPCPLCR-HGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD--AECESPACAPEIR 418 (513)
Q Consensus 362 ~~~~Cp~Cr-~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~--~~~~~~~~~~~~~ 418 (513)
..+.||+|- .+..-++-.|| | -+|+.|.-.... ++..||.|-.+++
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~H-----------iyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGH-----------IYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccc-----------eeehhhhhhhhcchhhcccCccCCCCc
Confidence 355799998 45555666655 7 899999755543 5789999988776
No 218
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=58.19 E-value=9.4 Score=26.93 Aligned_cols=42 Identities=17% Similarity=0.521 Sum_probs=28.5
Q ss_pred cchhhhc--ccceEEeeCCC-----cccchhhHhHhhccCCCCCCCCCCCCCCCCCCCc
Q 010335 319 TCAVCLE--RACTVAAEGCR-----HELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCR 370 (513)
Q Consensus 319 ~C~iC~~--~~~~v~~~~Cg-----h~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr 370 (513)
.|.||++ ........||. |.+-..|......... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~----------~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG----------NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC----------CCcCCCCC
Confidence 3778886 44555677885 5577788888875542 22599995
No 219
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=56.99 E-value=7.4 Score=29.09 Aligned_cols=40 Identities=23% Similarity=0.530 Sum_probs=17.2
Q ss_pred CCCCCccccceeeecCC--CCccccccccccccCccccCCCCCCCCCCCCCchhh
Q 010335 365 PCPLCRHGIVSFTKLPG--SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEI 417 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~--~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~ 417 (513)
.|++|-+-...-+-+-+ | .||..|..+. ....||.|..|.
T Consensus 9 rCs~C~~~l~~pv~l~~CeH-----------~fCs~Ci~~~--~~~~CPvC~~Pa 50 (65)
T PF14835_consen 9 RCSICFDILKEPVCLGGCEH-----------IFCSSCIRDC--IGSECPVCHTPA 50 (65)
T ss_dssp S-SSS-S--SS-B---SSS-------------B-TTTGGGG--TTTB-SSS--B-
T ss_pred CCcHHHHHhcCCceeccCcc-----------HHHHHHhHHh--cCCCCCCcCChH
Confidence 48888876555543333 6 8888887542 456799996553
No 220
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=56.46 E-value=2.8 Score=42.40 Aligned_cols=45 Identities=27% Similarity=0.508 Sum_probs=36.9
Q ss_pred CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC--CCCCCCCchhhccc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA--ECESPACAPEIRKN 420 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~--~~~~~~~~~~~~~~ 420 (513)
.|.||-..-..+.-=|| | .+|+.|-.--++. .+.||+||-||...
T Consensus 371 LCKICaendKdvkIEPCGH-----------LlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGH-----------LLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccc-----------hHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 58888877777766677 8 8999998777763 68999999999885
No 221
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=54.42 E-value=8.5 Score=33.12 Aligned_cols=51 Identities=25% Similarity=0.554 Sum_probs=37.1
Q ss_pred ccccchhhhcccceEEe----eCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 316 DADTCAVCLERACTVAA----EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~----~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
....|.||.+...+-.+ .-||-..|.-|--.|=...+. ..+||+|+.+..+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~---------ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNL---------YPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHccc---------CCCCCcccccccc
Confidence 66889999998777644 468888888888777544332 3379999977654
No 222
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.44 E-value=4 Score=40.27 Aligned_cols=42 Identities=24% Similarity=0.703 Sum_probs=35.1
Q ss_pred CCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCch
Q 010335 363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAP 415 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~ 415 (513)
...||||......-+.+|+ | .+|..|.....+....||.||+
T Consensus 13 ~~~C~iC~~~~~~p~~l~C~H-----------~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 13 ELTCPICLEYFREPVLLPCGH-----------NFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccChhhHHHhhcCccccccc-----------hHhHHHHHHhcCCCcCCcccCC
Confidence 4469999998888888877 8 9999998776666689999994
No 223
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.14 E-value=11 Score=35.98 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=35.9
Q ss_pred ccccchhhhcccc----eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 316 DADTCAVCLERAC----TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 316 ~~~~C~iC~~~~~----~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
....|.+|.+.-. -++..+|||++|.+|...|-.++. .||+|-.+..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~------------v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM------------VDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc------------cccCCCCcCc
Confidence 5678999887443 347889999999999999976543 5999876543
No 224
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.66 E-value=4.8 Score=34.45 Aligned_cols=61 Identities=30% Similarity=0.557 Sum_probs=37.0
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
.+...|-||.- +-++-+||| .|.-|.+++|..--...+.-++....+|-+|+.....+.+.
T Consensus 63 ~ddatC~IC~K---TKFADG~GH-~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ks 123 (169)
T KOG3799|consen 63 GDDATCGICHK---TKFADGCGH-NCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKS 123 (169)
T ss_pred CcCcchhhhhh---cccccccCc-ccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhc
Confidence 35578889874 345669999 66777777776532222222333445677777666555543
No 225
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.57 E-value=14 Score=35.64 Aligned_cols=74 Identities=20% Similarity=0.435 Sum_probs=47.0
Q ss_pred HHHHhCCCCCCCCC--ccccccchhhhcccc----------eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCC
Q 010335 300 VARECGLLSSTTSS--SDDADTCAVCLERAC----------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCP 367 (513)
Q Consensus 300 ~a~e~g~~~~~~~s--~~~~~~C~iC~~~~~----------~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp 367 (513)
.|..-|.-+.+..+ ..+...|.||-.+.- ...-..|+|.+-.-|..-.|...+... ||
T Consensus 205 mAs~iGfYs~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqt----------CP 274 (328)
T KOG1734|consen 205 MASTIGFYSPSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQT----------CP 274 (328)
T ss_pred HHHHhcccCCCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCC----------Cc
Confidence 34444554444322 235688999985432 346789999877777777887755433 99
Q ss_pred CCccccceeeecCCCCc
Q 010335 368 LCRHGIVSFTKLPGSPV 384 (513)
Q Consensus 368 ~Cr~~i~~~~~~~~~~~ 384 (513)
.|+..|+ ..++++-|+
T Consensus 275 YCKekVd-l~rmfsnpW 290 (328)
T KOG1734|consen 275 YCKEKVD-LKRMFSNPW 290 (328)
T ss_pred hHHHHhh-HhhhccCcc
Confidence 9997764 345555544
No 226
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.49 E-value=6 Score=41.33 Aligned_cols=47 Identities=26% Similarity=0.735 Sum_probs=34.0
Q ss_pred ccccchhhhcc--------cc---------eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335 316 DADTCAVCLER--------AC---------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 373 (513)
Q Consensus 316 ~~~~C~iC~~~--------~~---------~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i 373 (513)
....|.||+.. .+ +-...||.|.+-..|.+..-.+.+ ..||+||..+
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk-----------l~CPvCR~pL 633 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK-----------LICPVCRCPL 633 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc-----------ccCCccCCCC
Confidence 45789999842 11 223569999999999998876533 2699999774
No 227
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=51.20 E-value=6.9 Score=39.67 Aligned_cols=55 Identities=31% Similarity=0.573 Sum_probs=37.5
Q ss_pred ccccchhhhc----ccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335 316 DADTCAVCLE----RACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 381 (513)
Q Consensus 316 ~~~~C~iC~~----~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 381 (513)
-.-.|..|.+ +.-..-+.||.|.+-.+|+..+...+-+. .||-||.-+.++ +-|+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~r----------sCP~CrklrSs~-~rpg 422 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTR----------SCPNCRKLRSSM-KRPG 422 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCC----------CCccHHHHHhhc-cCCC
Confidence 3467888876 44566889999999999998776453222 499999444333 3355
No 228
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.01 E-value=12 Score=31.48 Aligned_cols=55 Identities=24% Similarity=0.561 Sum_probs=35.4
Q ss_pred cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC--------Cccccccccc--cccCccccCCCCC
Q 010335 339 LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS--------PVKDIKQPLS--LGLCTPCMLHTRD 405 (513)
Q Consensus 339 ~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~--------~~~~~~~~~~--~~~c~~c~~~~~~ 405 (513)
.|.+|.-.+|.- | +.||+|.-.+++-.-|... +++|+.|+.+ -..|.-|-..+.+
T Consensus 3 ~CPrC~skvC~L---------P---~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~ 67 (112)
T TIGR00622 3 FCPQCRAKVCEL---------P---VECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPK 67 (112)
T ss_pred cCCCCCCCccCC---------C---CcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCC
Confidence 467777666533 2 3599999888777666651 3457766432 3469999776654
No 229
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=50.42 E-value=4 Score=31.42 Aligned_cols=55 Identities=22% Similarity=0.417 Sum_probs=36.6
Q ss_pred CCCCCCCCCccccceee-ecCCCCccccccccccccCc----------cccCCCCCCCCCCCCCchhhcc
Q 010335 361 PGSIPCPLCRHGIVSFT-KLPGSPVKDIKQPLSLGLCT----------PCMLHTRDAECESPACAPEIRK 419 (513)
Q Consensus 361 ~~~~~Cp~Cr~~i~~~~-~~~~~~~~~~~~~~~~~~c~----------~c~~~~~~~~~~~~~~~~~~~~ 419 (513)
|..+.||.|++.+...+ .-+|. .++..++.+|- .|+....|..-.||.|+..+..
T Consensus 5 p~~~~CP~C~~~~~T~v~~~~g~----~t~~~~~~l~~~~~~~~~~iP~~~~~~kd~~H~Cp~C~~~lg~ 70 (73)
T PF10601_consen 5 PVRIYCPYCQQQVQTRVEYKSGT----MTYICAALLCLFGCWPCCCIPFCCDSCKDVYHYCPNCGAFLGT 70 (73)
T ss_pred ceeeECCCCCCEEEEEEEEEeCh----HHHHHHHHHHHHHHHHHhhHhhccccccCceEECCCCCCEeEE
Confidence 45678999998886554 45665 45533332222 2556667789999999987764
No 230
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=49.89 E-value=9 Score=38.63 Aligned_cols=13 Identities=15% Similarity=0.534 Sum_probs=10.9
Q ss_pred CCCCCCCCCchhh
Q 010335 405 DAECESPACAPEI 417 (513)
Q Consensus 405 ~~~~~~~~~~~~~ 417 (513)
++.|.|||||.|+
T Consensus 332 ERqQTCPICr~p~ 344 (491)
T COG5243 332 ERQQTCPICRRPV 344 (491)
T ss_pred HhccCCCcccCcc
Confidence 4789999998884
No 231
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.98 E-value=11 Score=36.64 Aligned_cols=53 Identities=26% Similarity=0.566 Sum_probs=39.8
Q ss_pred cccccchhhhcccceEEeeCC----CcccchhhHhHhhccCCCCCCCCCCCCCCCCCC
Q 010335 315 DDADTCAVCLERACTVAAEGC----RHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL 368 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~C----gh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~ 368 (513)
...-.|.+|-++--+.+++.| .|.+|+-|....-.....+.....|.+ ..||+
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSG-dkCPL 322 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSG-DKCPL 322 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCC-CcCcc
Confidence 345789999999999999999 788999999777555444555555543 45776
No 232
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=47.83 E-value=6.1 Score=40.32 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=0.0
Q ss_pred cceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 327 ACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 327 ~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
..+.++.||||.+=.+++.|++....+-.+. .-+-.||+|-..+.
T Consensus 357 ~pthaF~PCGHv~SekTa~yWs~i~lPhGt~---~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 357 PPTHAFNPCGHVCSEKTAKYWSQIPLPHGTH---AFHAACPFCATPLD 401 (416)
T ss_dssp ------------------------------------------------
T ss_pred CCceeecccccccchhhhhhhhcCCCCCCcc---cccccCCcccCccc
Confidence 3455889999988788888887664332211 12346999987765
No 233
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=47.61 E-value=20 Score=35.37 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=29.0
Q ss_pred ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 328 CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 328 ~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
.+-++.||||.+=.+.++|+.....+-. +-.-+..||+|-..++
T Consensus 371 pthaF~PCGHv~sekt~~YWs~iplPhG---T~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 371 PTHAFNPCGHVCSEKTVKYWSQIPLPHG---THAFHAACPFCATQLA 414 (429)
T ss_pred cccccCCcccccchhhhhHhhcCcCCCc---cccccccCcchhhhhc
Confidence 3447889999888888888865533222 1123557999986543
No 234
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.97 E-value=13 Score=40.99 Aligned_cols=57 Identities=28% Similarity=0.548 Sum_probs=42.1
Q ss_pred cchhhhcccceEEeeCCCc-ccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335 319 TCAVCLERACTVAAEGCRH-ELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 381 (513)
Q Consensus 319 ~C~iC~~~~~~v~~~~Cgh-~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 381 (513)
.|.||....--+....||| +.|..|..++-..-.. +--++-||+||..+..+..--.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~------~~~~~~~~vcr~~~~~~s~~~~ 59 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNN------RKCSNECPVCRREVETKSNGDS 59 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhccc------ccccccCcccccceeeeccccc
Confidence 5889999999999999999 6999999888544321 1125569999987776654333
No 235
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=46.10 E-value=12 Score=38.39 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=29.0
Q ss_pred ccccchhhhcccceEEeeCCCcccchhhHhHhh
Q 010335 316 DADTCAVCLERACTVAAEGCRHELCVRCALYLC 348 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~ 348 (513)
+.-.|.||......-...+|+|-+|.-|++.+.
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 456799999999999999999999999998663
No 236
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=45.75 E-value=7 Score=38.70 Aligned_cols=69 Identities=25% Similarity=0.524 Sum_probs=46.7
Q ss_pred cccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC-----CCc---ccccccccccc--CccccCCCCC-
Q 010335 337 HELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG-----SPV---KDIKQPLSLGL--CTPCMLHTRD- 405 (513)
Q Consensus 337 h~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~-----~~~---~~~~~~~~~~~--c~~c~~~~~~- 405 (513)
-.+|.+|.-.+|+- .+-||+|.-..++-..|.. .|+ .|+++..+.+. |.-|-.+...
T Consensus 276 Gy~CP~CkakvCsL------------P~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~ 343 (378)
T KOG2807|consen 276 GYFCPQCKAKVCSL------------PIECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSS 343 (378)
T ss_pred ceeCCcccCeeecC------------CccCCccceeEecchHHHHHHHhhcCCcchhhccccccCCCcceeeeccccCCC
Confidence 44788988777744 2359999977776665554 144 58888766665 9999333322
Q ss_pred CCCCCCCCchhh
Q 010335 406 AECESPACAPEI 417 (513)
Q Consensus 406 ~~~~~~~~~~~~ 417 (513)
.-.+|+.|+..|
T Consensus 344 ~~y~C~~Ck~~F 355 (378)
T KOG2807|consen 344 GRYRCESCKNVF 355 (378)
T ss_pred CcEEchhcccee
Confidence 456899998765
No 237
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=45.24 E-value=11 Score=42.75 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=23.2
Q ss_pred eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 329 TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 329 ~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
++...--||+-|+-|...+-..++.- .++.||.||+..+
T Consensus 1461 Ni~~~fsG~eECaICYsvL~~vdr~l-------PskrC~TCknKFH 1499 (1525)
T COG5219 1461 NIDEKFSGHEECAICYSVLDMVDRSL-------PSKRCATCKNKFH 1499 (1525)
T ss_pred hhhhhcCCcchhhHHHHHHHHHhccC-------Cccccchhhhhhh
Confidence 33444457888888887775333221 1346888887654
No 238
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=45.03 E-value=15 Score=36.25 Aligned_cols=36 Identities=25% Similarity=0.527 Sum_probs=28.9
Q ss_pred CCCCCCCCCCchhhcccccccccCCcccccccCCCCCC
Q 010335 404 RDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSV 441 (513)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (513)
+..-++||.|..+|.+.++..-+ ..||| .||+-|.+
T Consensus 232 ~R~g~pC~~Cg~~I~~~~~~gR~-ty~Cp-~CQ~~~~~ 267 (269)
T PRK14811 232 GREGQPCPRCGTPIEKIVVGGRG-THFCP-QCQPLRPL 267 (269)
T ss_pred CCCcCCCCcCCCeeEEEEECCCC-cEECC-CCcCCCCC
Confidence 34568999999999998887644 88999 79987754
No 239
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=43.66 E-value=23 Score=27.59 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=29.9
Q ss_pred ccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 326 RACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 326 ~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
..|.++-.-|.|-+-.+|..+...++. +||++|++.+
T Consensus 45 ~eC~v~wG~CnHaFH~HCI~rWL~Tk~------------~CPld~q~w~ 81 (88)
T COG5194 45 DECPVVWGVCNHAFHDHCIYRWLDTKG------------VCPLDRQTWV 81 (88)
T ss_pred CcceEEEEecchHHHHHHHHHHHhhCC------------CCCCCCceeE
Confidence 457788889999999999998887742 6999998743
No 240
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=43.16 E-value=4.8 Score=40.01 Aligned_cols=45 Identities=20% Similarity=0.567 Sum_probs=37.5
Q ss_pred CCCCCCccccceeeecCC-CCccccccccccccCccccCCCCC--CCCCCCCCchhhcc
Q 010335 364 IPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD--AECESPACAPEIRK 419 (513)
Q Consensus 364 ~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~--~~~~~~~~~~~~~~ 419 (513)
-.|-||-..++-...+|+ + ..|-.|+...+- ....||+||.|-.-
T Consensus 62 ~~C~ICA~~~TYs~~~PC~H-----------~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 62 MNCQICAGSTTYSARYPCGH-----------QICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred ceeEEecCCceEEEeccCCc-----------hHHHHHHHHHHHHHhccCCCccccccce
Confidence 359999999999999999 7 899999887776 46799999987543
No 241
>PLN03077 Protein ECB2; Provisional
Probab=41.39 E-value=6.1e+02 Score=29.26 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=51.4
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335 14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQTALMQACRYG 89 (513)
Q Consensus 14 L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~----eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g 89 (513)
+..-++.|+++.+..+++.-+..+... .++.+..-++.|.. ++++.+.+.|..+|.... .+.|...+..|
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s----~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty--~~ll~a~~~~g 302 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCIS----WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI--TSVISACELLG 302 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcch----hHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH--HHHHHHHHhcC
Confidence 334456677777777776533221111 12333434445554 333333445655543321 22333444555
Q ss_pred CHHHHHHHH----hcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 010335 90 HWEVVQTLL----LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADF 135 (513)
Q Consensus 90 ~~eiVk~LL----~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~ 135 (513)
..+..+.+. +.|..++... ..+.+..-+..|..+-+..+++..
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~---~n~Li~~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSV---CNSLIQMYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHH---HHHHHHHHHhcCCHHHHHHHHhhC
Confidence 554443333 3444433221 223344445566666666666543
No 242
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=40.50 E-value=4.7 Score=44.45 Aligned_cols=47 Identities=17% Similarity=0.451 Sum_probs=36.1
Q ss_pred CCCCCCCcccccee-eecCCCCccccccccccccCccccCCCCC-CCCCCCCCchhhccc
Q 010335 363 SIPCPLCRHGIVSF-TKLPGSPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIRKN 420 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~-~~~~~~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~ 420 (513)
...||+|...-.+. ..-++| .||..|...+-+ +...||.|-..|.-+
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H-----------~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGH-----------VFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred ceeCCCccCchhhHHHHhcch-----------HHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 34699999665555 444559 999999988866 578999998887655
No 243
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.72 E-value=40 Score=34.26 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=41.1
Q ss_pred CCCCCcccc---ceeeecCC-CCccccccccccccCccccCCC-CCCCCCCCCCchhhcccccccccCCcccccccCCCC
Q 010335 365 PCPLCRHGI---VSFTKLPG-SPVKDIKQPLSLGLCTPCMLHT-RDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFP 439 (513)
Q Consensus 365 ~Cp~Cr~~i---~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (513)
.|-||.... .+++.||| | -|=..|.-.- .+.-..||+||.++++.--....++ --|+.++.++
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H-----------~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e-~tp~~~~~~~ 298 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSH-----------KFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSE-DTPLLSQGPS 298 (348)
T ss_pred eEEEeecccccCCeeeEecCCC-----------chhhccchhhHhhcCccCCCCCCcCCCCCCCCCccC-CCccccCCCC
Confidence 588888554 47888999 5 2322563221 1123569999999998765555545 4677777776
Q ss_pred C
Q 010335 440 S 440 (513)
Q Consensus 440 ~ 440 (513)
+
T Consensus 299 ~ 299 (348)
T KOG4628|consen 299 S 299 (348)
T ss_pred c
Confidence 5
No 244
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=39.67 E-value=15 Score=38.17 Aligned_cols=55 Identities=27% Similarity=0.654 Sum_probs=43.0
Q ss_pred cccccchhhhcccceEEe-eCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335 315 DDADTCAVCLERACTVAA-EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 381 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~-~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 381 (513)
.....|.+|..-..+-.. ..|||.+|..|....... +..||.|++.+..-..+|.
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~------------~~~cp~~~~~~~~~~~~~~ 74 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN------------HQKCPVCRQELTQAEELPV 74 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhcc------------CcCCcccccccchhhccCc
Confidence 455789999988777777 599999999999665432 2259999999998888874
No 245
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=39.20 E-value=22 Score=23.68 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=19.4
Q ss_pred CCCCCCchhhcccccccccCCcccccccCCCCCC
Q 010335 408 CESPACAPEIRKNRVALVSSDMLCPVTCSPFPSV 441 (513)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (513)
..||.|..++..++-.. . .=++|+.||.-
T Consensus 2 ~~CP~Cg~~lv~r~~k~---g--~F~~Cs~yP~C 30 (39)
T PF01396_consen 2 EKCPKCGGPLVLRRGKK---G--KFLGCSNYPEC 30 (39)
T ss_pred cCCCCCCceeEEEECCC---C--CEEECCCCCCc
Confidence 47899987776654222 1 33799999953
No 246
>PLN03218 maturation of RBCL 1; Provisional
Probab=36.79 E-value=3.3e+02 Score=32.56 Aligned_cols=111 Identities=11% Similarity=0.083 Sum_probs=56.7
Q ss_pred HHHHHHHcCCHHHHHHHHhc------CCCCccccCCCCCCcHHHHHHHcCCHHHHHHH----HHCCCCCCCCCCCCChHH
Q 010335 13 RLVSAARDGDFVEAKMLLDC------NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALL----LENGADVNSRNYCGQTAL 82 (513)
Q Consensus 13 ~L~~Aa~~G~~e~vk~LL~~------~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~L----L~~Gadvn~~d~~g~TpL 82 (513)
-+...++.|+++.+..+++. +...+.. + .++.+...+..|+++-+..+ .+.|..++.. ...+.+
T Consensus 548 LI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-T---ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~--tynsLI 621 (1060)
T PLN03218 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-T---VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE--VYTIAV 621 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-H---HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH--HHHHHH
Confidence 34556677888877777642 1111111 1 14566667778887544444 4455543322 123344
Q ss_pred HHHHHcCCHHHHH----HHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 010335 83 MQACRYGHWEVVQ----TLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 132 (513)
Q Consensus 83 h~A~~~g~~eiVk----~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll 132 (513)
..-++.|..+-+. .+.+.|..++.... .+.+...+..|..+-+..++
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty---nsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFF---SALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhCCCHHHHHHHH
Confidence 4556677755433 33445655553321 23455556667666544444
No 247
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=36.65 E-value=6.5e+02 Score=28.20 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=9.0
Q ss_pred HHHHHHcCCHHHHHHHHHc
Q 010335 116 LHFAAVNGHVRCIRLVVAD 134 (513)
Q Consensus 116 Lh~A~~~g~~~iv~~Ll~~ 134 (513)
+..-++.|..+-+..+++.
T Consensus 266 i~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHCCCHHHHHHHHHh
Confidence 3344445555555444443
No 248
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=35.81 E-value=24 Score=34.52 Aligned_cols=30 Identities=33% Similarity=0.752 Sum_probs=22.8
Q ss_pred EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcc
Q 010335 331 AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRH 371 (513)
Q Consensus 331 ~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~ 371 (513)
...+|||.+|-.|--.+=+. ++-.||-|..
T Consensus 19 ~in~C~H~lCEsCvd~iF~~-----------g~~~CpeC~~ 48 (300)
T KOG3800|consen 19 MINECGHRLCESCVDRIFSL-----------GPAQCPECMV 48 (300)
T ss_pred eeccccchHHHHHHHHHHhc-----------CCCCCCcccc
Confidence 44599999999999887655 3337998874
No 249
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.19 E-value=15 Score=39.67 Aligned_cols=34 Identities=24% Similarity=0.572 Sum_probs=23.4
Q ss_pred cccchhhhcccce----EEeeCCCcccchhhHhHhhcc
Q 010335 317 ADTCAVCLERACT----VAAEGCRHELCVRCALYLCST 350 (513)
Q Consensus 317 ~~~C~iC~~~~~~----v~~~~Cgh~~C~~C~l~l~~~ 350 (513)
.-.|.||+.++.. -+...|||..|.+|+..+-..
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~ 48 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA 48 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc
Confidence 3457788644322 255699999999999777533
No 250
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=34.79 E-value=9.4 Score=29.43 Aligned_cols=37 Identities=27% Similarity=0.605 Sum_probs=24.3
Q ss_pred ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335 328 CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 373 (513)
Q Consensus 328 ~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i 373 (513)
|+++.-.|.|.+-..|.+....+. ...-+||.||+..
T Consensus 44 CPLv~G~C~h~fh~hCI~~wl~~~---------tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 44 CPLVWGYCLHAFHAHCILKWLNTP---------TSQGQCPMCRQTW 80 (84)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCc---------cccccCCcchhee
Confidence 445555777877777776665332 1234799999864
No 251
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=34.71 E-value=66 Score=32.96 Aligned_cols=19 Identities=16% Similarity=0.482 Sum_probs=15.0
Q ss_pred ccccccchhhhcccceEEe
Q 010335 314 SDDADTCAVCLERACTVAA 332 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~ 332 (513)
..+.+.|.-|+....+|..
T Consensus 268 ~~e~e~CigC~~~~~~vkl 286 (358)
T PF10272_consen 268 GQELEPCIGCMQAQPNVKL 286 (358)
T ss_pred ccccCCccccccCCCCcEE
Confidence 3678999999988887744
No 252
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=34.33 E-value=19 Score=35.45 Aligned_cols=55 Identities=18% Similarity=0.520 Sum_probs=40.5
Q ss_pred CCCCCcccccee-eecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccccccCCcccc
Q 010335 365 PCPLCRHGIVSF-TKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCP 432 (513)
Q Consensus 365 ~Cp~Cr~~i~~~-~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (513)
.|--|--+|... +-+|| + -||..|+-- +.+..||.|..+|.|--++-+.+-..|.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkH-----------vFCl~CAr~--~~dK~Cp~C~d~VqrIeq~~~g~iFmC~ 148 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKH-----------VFCLECARS--DSDKICPLCDDRVQRIEQIMMGGIFMCA 148 (389)
T ss_pred eecccCCcceeeecccccch-----------hhhhhhhhc--CccccCcCcccHHHHHHHhcccceEEee
Confidence 477777777777 67899 8 899999632 2378999999999986665555444454
No 253
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=33.55 E-value=10 Score=28.56 Aligned_cols=54 Identities=17% Similarity=0.365 Sum_probs=34.5
Q ss_pred CCCCCCCCccccceeee-cCCCCcccccccccc--c-----cC-ccccCCCCCCCCCCCCCchhhcc
Q 010335 362 GSIPCPLCRHGIVSFTK-LPGSPVKDIKQPLSL--G-----LC-TPCMLHTRDAECESPACAPEIRK 419 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~~-~~~~~~~~~~~~~~~--~-----~c-~~c~~~~~~~~~~~~~~~~~~~~ 419 (513)
..+.||.|.+.+...++ -+|. +.+.... . .| +.|.....|..-.||.|+..+..
T Consensus 2 ~~i~Cp~C~~~~~T~v~~~~g~----~t~~~~~ll~~~~~~~~iP~~~~~~kd~~H~Cp~C~~~lg~ 64 (67)
T smart00714 2 YQLFCPRCQNNVTTRVETETGV----CAWLICCLLFLLCFCCCLPCCLDSFKDVNHYCPNCGAFLGT 64 (67)
T ss_pred cceECCCCCCEEEEEEEEEeCh----HHHHHHHHHHHHHHHHHHHHhcccccCccEECCCCCCEeEE
Confidence 45689999988877655 5554 3332111 1 11 22566778889999999887754
No 254
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=33.44 E-value=26 Score=36.50 Aligned_cols=47 Identities=21% Similarity=0.606 Sum_probs=37.1
Q ss_pred CCCCCCCccccceeee--cCCCCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 363 SIPCPLCRHGIVSFTK--LPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~--~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
...||+|...+..=+. .+++ +||..|........+-||.|+.++.-.
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh-----------~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGH-----------RFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccCccccccccCCCCCCCCCC-----------cccccccchhhccCcCCcccccccchh
Confidence 3569999988888777 5558 999999877766678999997766554
No 255
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=33.33 E-value=7.3e+02 Score=27.80 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=18.9
Q ss_pred hHHHhhCCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHH-HHcCccch
Q 010335 225 LHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLPLDVA-RMWGRHWL 269 (513)
Q Consensus 225 Lh~Aa~~g~~eivk~LL~~-Gad~~~~d~~G~TpL~~A-~~~g~~~i 269 (513)
+..-++.|..+-+.-+++. +..++. .-|+.|.-| ...|+.++
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~~~p~~---~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAPFKPTV---NMWAALLTACRIHKNLEL 512 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCcHH
Confidence 3444456666555444443 333322 224444444 34555544
No 256
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.32 E-value=12 Score=38.80 Aligned_cols=44 Identities=25% Similarity=0.596 Sum_probs=33.9
Q ss_pred CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK 419 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 419 (513)
.|-+|.......+..|+ + ++|..|...-.+...+||+||.++..
T Consensus 86 ~c~vc~~~l~~pv~tpcgh-----------s~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 86 ECCVCSRALYPPVVTPCGH-----------SFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred hhhhhHhhcCCCccccccc-----------cccHHHHHHHhccCCCCccccccccc
Confidence 37777777777777788 7 88888855545568899999999886
No 257
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.66 E-value=76 Score=36.14 Aligned_cols=176 Identities=16% Similarity=0.084 Sum_probs=94.7
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHH
Q 010335 13 RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWE 92 (513)
Q Consensus 13 ~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~e 92 (513)
.+-.|....+++.|-.|++.+.- -|+.++-|-.++|..++.-..++ +-.|-+-+|...|++|
T Consensus 599 ~FKlALi~k~ydeVl~lI~ns~L--------vGqaiIaYLqKkgypeiAL~FVk----------D~~tRF~LaLe~gnle 660 (1202)
T KOG0292|consen 599 RFKLALLNKKYDEVLHLIKNSNL--------VGQAIIAYLQKKGYPEIALHFVK----------DERTRFELALECGNLE 660 (1202)
T ss_pred HHHHHHHhhhhHHHHHHHHhcCc--------ccHHHHHHHHhcCCcceeeeeec----------CcchheeeehhcCCHH
Confidence 46678888888888888875421 12566666666666655533322 2456677888888888
Q ss_pred HHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcc
Q 010335 93 VVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN 172 (513)
Q Consensus 93 iVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 172 (513)
++--.-...-+.+.-. -.-.-|...|+.++++.-++.......... +....+ +...+.+..+
T Consensus 661 ~ale~akkldd~d~w~-----rLge~Al~qgn~~IaEm~yQ~~knfekLsf----LYliTg---------n~eKL~Km~~ 722 (1202)
T KOG0292|consen 661 VALEAAKKLDDKDVWE-----RLGEEALRQGNHQIAEMCYQRTKNFEKLSF----LYLITG---------NLEKLSKMMK 722 (1202)
T ss_pred HHHHHHHhcCcHHHHH-----HHHHHHHHhcchHHHHHHHHHhhhhhheeE----EEEEeC---------CHHHHHHHHH
Confidence 7755444433322111 123557778999999988765332111100 000011 1112222111
Q ss_pred c--ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHH--HhhCCCHHHHHHHHHC
Q 010335 173 K--AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF--AACGGNLKCCQVLLSR 243 (513)
Q Consensus 173 ~--~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~--Aa~~g~~eivk~LL~~ 243 (513)
. ..++-.+-++.|...|+++--..+++.| |+.||-| |+.+|..+..+.|.+.
T Consensus 723 iae~r~D~~~~~qnalYl~dv~ervkIl~n~-------------------g~~~laylta~~~G~~~~ae~l~ee 778 (1202)
T KOG0292|consen 723 IAEIRNDATGQFQNALYLGDVKERVKILENG-------------------GQLPLAYLTAAAHGLEDQAEKLGEE 778 (1202)
T ss_pred HHHhhhhhHHHHHHHHHhccHHHHHHHHHhc-------------------CcccHHHHHHhhcCcHHHHHHHHHh
Confidence 1 1122234566677777765444444433 6677766 4556767777777754
No 258
>PLN03218 maturation of RBCL 1; Provisional
Probab=32.47 E-value=5.1e+02 Score=30.99 Aligned_cols=15 Identities=13% Similarity=0.239 Sum_probs=7.5
Q ss_pred cHHHHHHHcCCHHHH
Q 010335 47 SPLHFAAAKGHNEIV 61 (513)
Q Consensus 47 TpLh~Aa~~g~~eiv 61 (513)
+.+...+..|+++.+
T Consensus 477 sLI~~y~k~G~vd~A 491 (1060)
T PLN03218 477 TLISTCAKSGKVDAM 491 (1060)
T ss_pred HHHHHHHhCcCHHHH
Confidence 444455555655433
No 259
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=31 Score=35.79 Aligned_cols=54 Identities=19% Similarity=0.374 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCCCCCCCccccccchhhhcccce----EEeeCCCcccchhhHhHhhccC
Q 010335 296 SVLNVARECGLLSSTTSSSDDADTCAVCLERACT----VAAEGCRHELCVRCALYLCSTN 351 (513)
Q Consensus 296 ~~l~~a~e~g~~~~~~~s~~~~~~C~iC~~~~~~----v~~~~Cgh~~C~~C~l~l~~~~ 351 (513)
.++..|++.... ..........|.+|...... .....|+|.+|..|...-....
T Consensus 127 ~~~~lA~e~i~s--~~~~~~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 127 FAYKLAREAIVS--QLPSKLPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred HHHHHHHHhhcc--ccccccccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 356666666554 22233457889999932222 2356899999999998765543
No 260
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=32.00 E-value=11 Score=28.76 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=18.6
Q ss_pred ccchhhhcccc------eEEee--CCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 318 DTCAVCLERAC------TVAAE--GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 318 ~~C~iC~~~~~------~v~~~--~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
..|.||....- .++.. .|++.+-..|....-.....+. ....|....||.|+.+|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~-~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSR-QSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS--TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCC-eeecccccCCcCCCCeee
Confidence 45777775321 22222 5555555556555433211111 112233446999998874
No 261
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=31.76 E-value=30 Score=36.04 Aligned_cols=47 Identities=15% Similarity=0.371 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCCCCcc----ccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCch
Q 010335 356 EMVGPPGSIPCPLCRH----GIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAP 415 (513)
Q Consensus 356 ~~~~~~~~~~Cp~Cr~----~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~ 415 (513)
+..++.+.+.||+|.. .+.+++.+++ | +|=..|. +.-.++.||.||-
T Consensus 168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~c~H-----------sfh~~cl--~~w~~~scpvcR~ 219 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSSTTGILTILCNH-----------SFHCSCL--MKWWDSSCPVCRY 219 (493)
T ss_pred CCCCcccCCCcchhHhhcCccccceeeeeccc-----------ccchHHH--hhcccCcChhhhh
Confidence 3445556778999984 4455566666 5 3322462 2225788999974
No 262
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=31.53 E-value=18 Score=35.29 Aligned_cols=43 Identities=28% Similarity=0.622 Sum_probs=31.3
Q ss_pred CCCCCCCCccccceeeecCC--CCccccccccccccCccccCCC-CCCCCCCCCC-ch
Q 010335 362 GSIPCPLCRHGIVSFTKLPG--SPVKDIKQPLSLGLCTPCMLHT-RDAECESPAC-AP 415 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~~~~~--~~~~~~~~~~~~~~c~~c~~~~-~~~~~~~~~~-~~ 415 (513)
.+..||+|..-...-++.|+ + .||-+|...- -+.+-.||-| |.
T Consensus 273 i~LkCplc~~Llrnp~kT~cC~~-----------~fc~eci~~al~dsDf~CpnC~rk 319 (427)
T COG5222 273 ISLKCPLCHCLLRNPMKTPCCGH-----------TFCDECIGTALLDSDFKCPNCSRK 319 (427)
T ss_pred ccccCcchhhhhhCcccCccccc-----------hHHHHHHhhhhhhccccCCCcccc
Confidence 34679999877666667665 5 8999996533 4468899999 53
No 263
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.50 E-value=22 Score=34.92 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=35.9
Q ss_pred CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK 419 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 419 (513)
.|-|||....+=+..-+ | .||.-|++-.-.....|++|-+.+..
T Consensus 243 ~c~icr~~f~~pVvt~c~h-----------~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 243 KCFICRKYFYRPVVTKCGH-----------YFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred cccccccccccchhhcCCc-----------eeehhhhccccccCCcceeccccccc
Confidence 49999988887666655 8 99999998877778899999776654
No 264
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=30.40 E-value=24 Score=37.38 Aligned_cols=81 Identities=20% Similarity=0.456 Sum_probs=50.8
Q ss_pred hhHHHHHHHHhCCCCCCCC------CccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCC
Q 010335 294 LLSVLNVARECGLLSSTTS------SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCP 367 (513)
Q Consensus 294 l~~~l~~a~e~g~~~~~~~------s~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp 367 (513)
+.+.++++.++....+.+. .......|.+|-+..-+..-..|.|.+|.-|....-.. . ..+ .-..||
T Consensus 507 LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~--f---~~~--~nvtCP 579 (791)
T KOG1002|consen 507 LITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVES--F---MEN--NNVTCP 579 (791)
T ss_pred HHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHh--h---hcc--cCCCCc
Confidence 4555666666655444321 12357899999999999988999999998887333211 0 011 124699
Q ss_pred CCccccceeeecCC
Q 010335 368 LCRHGIVSFTKLPG 381 (513)
Q Consensus 368 ~Cr~~i~~~~~~~~ 381 (513)
.|-.+...=..-|.
T Consensus 580 ~C~i~LsiDlse~a 593 (791)
T KOG1002|consen 580 VCHIGLSIDLSEPA 593 (791)
T ss_pred cccccccccccchh
Confidence 99977654433343
No 265
>PF04641 Rtf2: Rtf2 RING-finger
Probab=30.17 E-value=40 Score=32.95 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=35.0
Q ss_pred cccccchhhhc----ccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335 315 DDADTCAVCLE----RACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 376 (513)
Q Consensus 315 ~~~~~C~iC~~----~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~ 376 (513)
.....|.|... ....+++.+|||+++.++.-.+. .. ..||+|-.+...-
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~------------~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KS------------KKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-cc------------ccccccCCccccC
Confidence 34567777764 34577889999999999887773 11 1499999876543
No 266
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=29.21 E-value=32 Score=33.94 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=24.4
Q ss_pred CCCCCCCCCchhhcccccccccCCcccccccCC
Q 010335 405 DAECESPACAPEIRKNRVALVSSDMLCPVTCSP 437 (513)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (513)
....+||.|..+|++.++..-+ ..||| .||+
T Consensus 242 R~g~pCprCG~~I~~~~~~gR~-t~~CP-~CQ~ 272 (272)
T PRK14810 242 RTGEPCLNCKTPIRRVVVAGRS-SHYCP-HCQK 272 (272)
T ss_pred CCCCcCCCCCCeeEEEEECCCc-cEECc-CCcC
Confidence 3567999999999998887755 88888 5764
No 267
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.04 E-value=3.6 Score=41.22 Aligned_cols=47 Identities=21% Similarity=0.578 Sum_probs=33.9
Q ss_pred CCCCCCccccceeeecCC--CCccccccccccccCccccCCC-CCCCCCCCCCchhhcccc
Q 010335 364 IPCPLCRHGIVSFTKLPG--SPVKDIKQPLSLGLCTPCMLHT-RDAECESPACAPEIRKNR 421 (513)
Q Consensus 364 ~~Cp~Cr~~i~~~~~~~~--~~~~~~~~~~~~~~c~~c~~~~-~~~~~~~~~~~~~~~~~~ 421 (513)
..||+|..-|...+-.+. | .||-.|...- +.....||.||+...-+|
T Consensus 44 v~c~icl~llk~tmttkeClh-----------rfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 44 VICPICLSLLKKTMTTKECLH-----------RFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hccHHHHHHHHhhcccHHHHH-----------HHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 358888887777666665 7 8999997443 345789999988765544
No 268
>PLN03077 Protein ECB2; Provisional
Probab=28.86 E-value=9.5e+02 Score=27.69 Aligned_cols=49 Identities=12% Similarity=0.061 Sum_probs=27.8
Q ss_pred HHHHHcCCHHHHH----HHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335 183 HMAALNGYFDCVQ----LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243 (513)
Q Consensus 183 h~Aa~~g~~eiv~----~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~ 243 (513)
...+..|+.+..+ .+++.|..++... ..+.+..-++.|..+-+..+++.
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~------------~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSV------------CNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHH------------HHHHHHHHHhcCCHHHHHHHHhh
Confidence 3344455544433 3344565555444 34566666777888777777764
No 269
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.77 E-value=13 Score=37.29 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=35.8
Q ss_pred CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335 362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK 419 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 419 (513)
+...||||-..-.+.+..|+ | ..|.-|+..----.+-|-+|+..+..
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H-----------~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSH-----------RSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCC-----------chHHHHHHHHHhcCCeeeEecceeee
Confidence 45579999988888888888 7 78988854322235689999988875
No 270
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=28.74 E-value=39 Score=20.41 Aligned_cols=19 Identities=21% Similarity=0.586 Sum_probs=9.3
Q ss_pred CccccCCCCCCCCCCCCCc
Q 010335 396 CTPCMLHTRDAECESPACA 414 (513)
Q Consensus 396 c~~c~~~~~~~~~~~~~~~ 414 (513)
|+.|..+.......||.|-
T Consensus 3 CP~C~~~V~~~~~~Cp~CG 21 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCG 21 (26)
T ss_pred CCCCcCCchhhcCcCCCCC
Confidence 4445444444445555553
No 271
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=28.55 E-value=12 Score=37.26 Aligned_cols=51 Identities=24% Similarity=0.467 Sum_probs=34.6
Q ss_pred CCCCCCcccccee--eecCCCCccccccccccccCccccCCCCC-CCCCCCCCchhhccccc
Q 010335 364 IPCPLCRHGIVSF--TKLPGSPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIRKNRV 422 (513)
Q Consensus 364 ~~Cp~Cr~~i~~~--~~~~~~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~~~ 422 (513)
..||+|..+|... -+-||. ---..|++|--+.+. ....||.||.....--|
T Consensus 15 d~cplcie~mditdknf~pc~--------cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCP--------CGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccCcccccccccccCCcccCC--------cccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 3599999887643 233441 012579999877755 67899999988777543
No 272
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=28.33 E-value=35 Score=19.90 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=12.9
Q ss_pred cCccccCCCCCCCCCCCCCchh
Q 010335 395 LCTPCMLHTRDAECESPACAPE 416 (513)
Q Consensus 395 ~c~~c~~~~~~~~~~~~~~~~~ 416 (513)
+|+-|-.+..+...-||.|-.+
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCc
Confidence 3566655555556666666544
No 273
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=26.59 E-value=38 Score=33.58 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=24.7
Q ss_pred CCCCCCCCCCchhhcccccccccCCcccccccCC
Q 010335 404 RDAECESPACAPEIRKNRVALVSSDMLCPVTCSP 437 (513)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (513)
+...++||.|..+|.+..+..-+ ..||| .||+
T Consensus 251 ~R~g~pC~~Cg~~I~~~~~~gR~-t~~CP-~CQ~ 282 (282)
T PRK13945 251 RRTGKPCRKCGTPIERIKLAGRS-THWCP-NCQK 282 (282)
T ss_pred CCCcCCCCcCCCeeEEEEECCCc-cEECC-CCcC
Confidence 33568999999999988877644 78888 5774
No 274
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=26.52 E-value=3.5e+02 Score=26.82 Aligned_cols=121 Identities=15% Similarity=0.051 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCHHHHHHHHhc-CCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHC--CCCC-CCCCCCCChHHHHHHH
Q 010335 12 ERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN--GADV-NSRNYCGQTALMQACR 87 (513)
Q Consensus 12 ~~L~~Aa~~G~~e~vk~LL~~-~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~--Gadv-n~~d~~g~TpLh~A~~ 87 (513)
-.|..+.+.++.+....+++. .+++.....+..|+..+......+..+....+++. |--+ =..|..|.-.+..+..
T Consensus 23 r~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlqkll~ 102 (322)
T cd07920 23 RFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLE 102 (322)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence 346677778888888877765 33333333334446677777777766555544432 1000 1345667666666666
Q ss_pred cCCHHHHHHHHhc--CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 010335 88 YGHWEVVQTLLLF--RCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 132 (513)
Q Consensus 88 ~g~~eiVk~LL~~--ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll 132 (513)
.+..+....+++. +.-.....+..|...+..+......+..+.++
T Consensus 103 ~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~ 149 (322)
T cd07920 103 SISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFII 149 (322)
T ss_pred hcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHH
Confidence 6654443333322 11111111125656666666555555555544
No 275
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=26.49 E-value=71 Score=32.05 Aligned_cols=54 Identities=22% Similarity=0.514 Sum_probs=38.4
Q ss_pred CCCCCcccc--ceeeecCCCCccccccccccccCccccCCCCCCCCCCCCCchhhccccccccc
Q 010335 365 PCPLCRHGI--VSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVS 426 (513)
Q Consensus 365 ~Cp~Cr~~i--~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (513)
.||+|-... ..-..+|+. -+-++|.+|-....+-+-+||+||.+..++-..+..
T Consensus 251 s~p~~~~~~~~~d~~~lP~~--------~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t~~s~~ 306 (327)
T KOG2068|consen 251 SCPICYEDLDLTDSNFLPCP--------CGFRLCLFCHKTISDGDGRCPGCRKPYERNTKKSET 306 (327)
T ss_pred CCCCCCCccccccccccccc--------ccccchhhhhhcccccCCCCCccCCccccCcccccc
Confidence 488888654 445667773 122489999777777889999999887777655544
No 276
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.44 E-value=24 Score=36.26 Aligned_cols=32 Identities=22% Similarity=0.534 Sum_probs=25.0
Q ss_pred ccccchhhhcccc---eEEeeCCCcccchhhHhHh
Q 010335 316 DADTCAVCLERAC---TVAAEGCRHELCVRCALYL 347 (513)
Q Consensus 316 ~~~~C~iC~~~~~---~v~~~~Cgh~~C~~C~l~l 347 (513)
..-.|.||++... .+...||+|.+|..|+...
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY 217 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDY 217 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHH
Confidence 3467999997543 3578899999999998655
No 277
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=26.40 E-value=38 Score=33.37 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=23.5
Q ss_pred CCCCCCCCchhhcccccccccCCcccccccCC
Q 010335 406 AECESPACAPEIRKNRVALVSSDMLCPVTCSP 437 (513)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (513)
..++||.|..+|.+..+..-+ ..||| .||+
T Consensus 244 ~g~pC~~Cg~~I~~~~~~gR~-t~~CP-~CQ~ 273 (274)
T PRK01103 244 EGEPCRRCGTPIEKIKQGGRS-TFFCP-RCQK 273 (274)
T ss_pred CCCCCCCCCCeeEEEEECCCC-cEECc-CCCC
Confidence 467899999999887777644 78888 6775
No 278
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=25.52 E-value=57 Score=19.04 Aligned_cols=15 Identities=40% Similarity=1.194 Sum_probs=11.2
Q ss_pred cCCCCCCCcCCcccC
Q 010335 435 CSPFPSVAIPLCTCN 449 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~ 449 (513)
|.+||.-+--+|.|.
T Consensus 3 cg~ypnaachpc~ck 17 (26)
T PF07829_consen 3 CGPYPNAACHPCGCK 17 (26)
T ss_dssp STTSSSSS--TTTST
T ss_pred ccCCCCccccccccc
Confidence 789999998888885
No 279
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=25.51 E-value=17 Score=25.38 Aligned_cols=45 Identities=18% Similarity=0.394 Sum_probs=27.4
Q ss_pred CCCCCccccceeeecCCCCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 365 PCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
.|.-|.-.-.++++=-.| .+|--|-+-+-..+.-||||..++-.+
T Consensus 4 nCKsCWf~~k~Li~C~dH-----------YLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFANKGLIKCSDH-----------YLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S--SSEEE-SS------------EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcCCCeeeecch-----------hHHHHHHHHHhccccCCCcccCcCccc
Confidence 366677666777776668 999999988888999999998876554
No 280
>PF06221 zf-C2HC5: Putative zinc finger motif, C2HC5-type; InterPro: IPR009349 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.44 E-value=42 Score=24.58 Aligned_cols=28 Identities=29% Similarity=0.839 Sum_probs=20.0
Q ss_pred cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 339 LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 339 ~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
.|..|...+|..+-+ .-+||+|-..+.+
T Consensus 20 NCl~CGkIiC~~Eg~---------~~pC~fCg~~l~~ 47 (57)
T PF06221_consen 20 NCLNCGKIICEQEGP---------LGPCPFCGTPLLS 47 (57)
T ss_pred cccccChhhcccccC---------cCcCCCCCCcccC
Confidence 477888888877521 3469999977654
No 281
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=24.11 E-value=68 Score=31.83 Aligned_cols=49 Identities=12% Similarity=-0.050 Sum_probs=37.6
Q ss_pred cccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 317 ADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 317 ~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
-..|.+|....-+.+..+|+|- .|+.|+-. +. +..||.|-+...-.+.+
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~--s~------------~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASA--SA------------SPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhc--cc------------CCccccccccceeeeec
Confidence 4678899998888899999998 79999941 11 22699999887766654
No 282
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=24.06 E-value=84 Score=35.55 Aligned_cols=55 Identities=20% Similarity=0.466 Sum_probs=36.7
Q ss_pred CccccccchhhhcccceE----EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccc
Q 010335 313 SSDDADTCAVCLERACTV----AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHG 372 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v----~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~ 372 (513)
+.....+|+||.++.... ....|.|.+-..|...++..... .-+.--.||.|+..
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek-----~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEK-----TGQDGWRCPACQSV 245 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhh-----ccCccccCCcccch
Confidence 345678999999865433 55678899888888888755211 11123459999954
No 283
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.93 E-value=21 Score=30.26 Aligned_cols=23 Identities=26% Similarity=0.826 Sum_probs=19.8
Q ss_pred ccCccccCCCCC-CCCCCCCCchhhccc
Q 010335 394 GLCTPCMLHTRD-AECESPACAPEIRKN 420 (513)
Q Consensus 394 ~~c~~c~~~~~~-~~~~~~~~~~~~~~~ 420 (513)
.||.-| |. +-.+||+|-++||..
T Consensus 29 afcskc----geati~qcp~csasirgd 52 (160)
T COG4306 29 AFCSKC----GEATITQCPICSASIRGD 52 (160)
T ss_pred HHHhhh----chHHHhcCCccCCccccc
Confidence 688888 77 578999999999985
No 284
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=23.52 E-value=58 Score=25.34 Aligned_cols=55 Identities=24% Similarity=0.562 Sum_probs=21.4
Q ss_pred cccccchhhhcc-------cceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecC
Q 010335 315 DDADTCAVCLER-------ACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP 380 (513)
Q Consensus 315 ~~~~~C~iC~~~-------~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~ 380 (513)
.....|.||-+. ...|+..-|+..+|..|..|=-.. +...||-|+....+....|
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErke-----------g~q~CpqCkt~ykr~kgsp 68 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKE-----------GNQVCPQCKTRYKRHKGSP 68 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHT-----------S-SB-TTT--B----TT--
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhc-----------CcccccccCCCcccccCCC
Confidence 345789999864 345566677777888888776444 4457999996655444333
No 285
>PRK10445 endonuclease VIII; Provisional
Probab=23.41 E-value=47 Score=32.54 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=24.3
Q ss_pred CCCCCCCCCchhhcccccccccCCcccccccCC
Q 010335 405 DAECESPACAPEIRKNRVALVSSDMLCPVTCSP 437 (513)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (513)
...++||.|..+|.+..+..-+ ..||| .||+
T Consensus 233 r~g~~Cp~Cg~~I~~~~~~gR~-t~~CP-~CQ~ 263 (263)
T PRK10445 233 RDGEACERCGGIIEKTTLSSRP-FYWCP-GCQK 263 (263)
T ss_pred CCCCCCCCCCCEeEEEEECCCC-cEECC-CCcC
Confidence 3567899999999998887755 88888 6764
No 286
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=23.32 E-value=47 Score=26.83 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=35.1
Q ss_pred hHHHHHHHHhCCCCCCCCCccccccchhhhcccceEEeeCCCcccchhhHhHh
Q 010335 295 LSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYL 347 (513)
Q Consensus 295 ~~~l~~a~e~g~~~~~~~s~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l 347 (513)
...++|-..++--.+.+ ....|..|.++.-..+. |.+|..|+..+
T Consensus 37 ~~~IeWK~kY~KYKpLt----~p~kC~~C~qktVk~AY----h~iC~~Ca~~~ 81 (92)
T PF10217_consen 37 KDIIEWKVKYGKYKPLT----QPKKCNKCQQKTVKHAY----HVICDPCAKEL 81 (92)
T ss_pred HHHHHHHHHhcCcccCC----CCccccccccchHHHHH----HHHHHHHHHhh
Confidence 35678888887554433 67889999999888787 99999999666
No 287
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=22.87 E-value=16 Score=27.90 Aligned_cols=9 Identities=33% Similarity=1.232 Sum_probs=4.5
Q ss_pred CCCCCcccc
Q 010335 365 PCPLCRHGI 373 (513)
Q Consensus 365 ~Cp~Cr~~i 373 (513)
.||.|.+++
T Consensus 3 ~CP~C~~~L 11 (70)
T PF07191_consen 3 TCPKCQQEL 11 (70)
T ss_dssp B-SSS-SBE
T ss_pred cCCCCCCcc
Confidence 477777663
No 288
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=22.83 E-value=26 Score=34.49 Aligned_cols=67 Identities=22% Similarity=0.476 Sum_probs=36.3
Q ss_pred cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC-----CCcc---ccccc--cccccCccccCCCCC---
Q 010335 339 LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG-----SPVK---DIKQP--LSLGLCTPCMLHTRD--- 405 (513)
Q Consensus 339 ~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~-----~~~~---~~~~~--~~~~~c~~c~~~~~~--- 405 (513)
.|..|.-.+|+- .+.||+|---.+.-+-|.. .|+| |.++. .--.-|-.|-+.+++
T Consensus 310 ~CP~CktkVCsL------------Pi~CP~Csl~LilsthLarSyhhL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~~ 377 (421)
T COG5151 310 ECPVCKTKVCSL------------PISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPV 377 (421)
T ss_pred eCCcccceeecC------------CccCcchhHHHHHHHHHHHHHHhhccCcccccccCCCCCCCccceeccCCCCCCCC
Confidence 577777666533 2458888755443333332 2443 55552 223447777664433
Q ss_pred ---------CCCCCCCCchhh
Q 010335 406 ---------AECESPACAPEI 417 (513)
Q Consensus 406 ---------~~~~~~~~~~~~ 417 (513)
.-.+|+.||.+|
T Consensus 378 ~~~~~~~ss~rY~Ce~CK~~F 398 (421)
T COG5151 378 SPFDESTSSGRYQCELCKSTF 398 (421)
T ss_pred Ccccccccccceechhhhhhh
Confidence 234788887765
No 289
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=22.68 E-value=33 Score=29.78 Aligned_cols=16 Identities=44% Similarity=0.916 Sum_probs=12.4
Q ss_pred CCCCCCCccccceeee
Q 010335 363 SIPCPLCRHGIVSFTK 378 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~ 378 (513)
.|.||.||+.|--++.
T Consensus 9 ei~CPhCRQ~ipALtL 24 (163)
T TIGR02652 9 EIRCPHCRQNIPALTL 24 (163)
T ss_pred cCcCchhhcccchhee
Confidence 5789999998765543
No 290
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=22.58 E-value=8.9 Score=38.15 Aligned_cols=48 Identities=23% Similarity=0.547 Sum_probs=0.0
Q ss_pred CCCCCCCccccceeeecCC--CCccccccccccccCccccCCCCCCCCCCCCCchhhcccc
Q 010335 363 SIPCPLCRHGIVSFTKLPG--SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNR 421 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~~~--~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~ 421 (513)
++.|++|+.-+...+-+.- | .||-.|...--.....||.|.-.|.+.+
T Consensus 15 ~itC~LC~GYliDATTI~eCLH-----------TFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLH-----------TFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ceehhhccceeecchhHHHHHH-----------HHHHHHHHHHHHHhccCCccceeccCcc
No 291
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=22.00 E-value=46 Score=24.29 Aligned_cols=16 Identities=31% Similarity=0.683 Sum_probs=9.4
Q ss_pred CCCCCCCCccccceee
Q 010335 362 GSIPCPLCRHGIVSFT 377 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~ 377 (513)
..++||+|-.....+.
T Consensus 2 ~LkPCPFCG~~~~~~~ 17 (61)
T PF14354_consen 2 ELKPCPFCGSADVLIR 17 (61)
T ss_pred CCcCCCCCCCcceEee
Confidence 4567999943433333
No 292
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=21.67 E-value=85 Score=31.45 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=28.4
Q ss_pred CccccccchhhhcccceE-EeeCCCcccchhhHhHhhcc
Q 010335 313 SSDDADTCAVCLERACTV-AAEGCRHELCVRCALYLCST 350 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v-~~~~Cgh~~C~~C~l~l~~~ 350 (513)
...+...|.+|+....+- +..--|-++|..|....-.+
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~ 334 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN 334 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh
Confidence 445679999999765443 66667899999999877554
No 293
>PF01671 ASFV_360: African swine fever virus multigene family 360 protein; InterPro: IPR002595 The multigene family 360 protein are found within the African swine fever virus (ASFV) genome which consist of dsDNA and has similar structural features to the poxviruses []. The biological function of this family is not known [], although Q65137 from SWISSPROT is a major structural protein [].; GO: 0042330 taxis
Probab=21.45 E-value=2e+02 Score=26.93 Aligned_cols=123 Identities=14% Similarity=0.044 Sum_probs=71.2
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhc
Q 010335 84 QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163 (513)
Q Consensus 84 ~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (513)
.|++++-.+.++++-++-...+.- -|..|...+++.=+..+....
T Consensus 91 ~Av~ynL~~AI~Yfyq~y~hl~~W-------RL~CaL~fNnvfdlHe~y~~e---------------------------- 135 (215)
T PF01671_consen 91 IAVQYNLKEAIQYFYQKYPHLNDW-------RLICALYFNNVFDLHEIYNKE---------------------------- 135 (215)
T ss_pred HHHHhhhHHHHHHHHHhccchhhH-------HHHHHHHhCCHHHHHHHHHHh----------------------------
Confidence 577777788888887765554422 255566666655444443210
Q ss_pred hhHHHHhcccccCCCCcHHHHHHHcC-CHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHH
Q 010335 164 QSALSKFVNKAADGGITALHMAALNG-YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 242 (513)
Q Consensus 164 ~~~~~~~i~~~d~~G~TpLh~Aa~~g-~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~ 242 (513)
..+.+-.--+.+|+.+. +...+=+-.-.|||+|. ++...+.+.+..=+-+-++
T Consensus 136 ---------ki~mdineMM~lAC~~d~N~ltIYYCf~LGAdIN~-----------------AM~~si~~~n~~N~fFCID 189 (215)
T PF01671_consen 136 ---------KIRMDINEMMRLACMYDNNFLTIYYCFALGADINQ-----------------AMLTSIQNYNIGNMFFCID 189 (215)
T ss_pred ---------hcCCCHHHHHHHHHcCCCCchHHHHHHHhcccHHH-----------------HHHHHHHhcccccEEeeec
Confidence 11111223466676553 45555566677888764 6666666666655555666
Q ss_pred CCCCCCCcCCCCCcHHHHHHHcCccchhhhc
Q 010335 243 RGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273 (513)
Q Consensus 243 ~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL 273 (513)
-|||.-. -...+|.+.++..++.+|
T Consensus 190 LGAnafe------e~~~lA~q~~~~~i~~iL 214 (215)
T PF01671_consen 190 LGANAFE------EAKALAEQKNYYNISNIL 214 (215)
T ss_pred cCCChHH------HHHHHHHHhcHHHHHHHh
Confidence 7776432 245677777776666554
No 294
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.24 E-value=54 Score=32.27 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=23.4
Q ss_pred CCCCCCCCCCchhhcccccccccCCcccccccC
Q 010335 404 RDAECESPACAPEIRKNRVALVSSDMLCPVTCS 436 (513)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (513)
+...++||.|..+|.+.++..-+ ..||| .||
T Consensus 242 ~r~g~pC~~Cg~~I~~~~~~gR~-t~~CP-~CQ 272 (272)
T TIGR00577 242 GRKGEPCRRCGTPIEKIKVGGRG-THFCP-QCQ 272 (272)
T ss_pred CCCCCCCCCCCCeeEEEEECCCC-CEECC-CCC
Confidence 33568999999999998877644 77887 454
No 295
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=21.10 E-value=19 Score=35.87 Aligned_cols=49 Identities=24% Similarity=0.472 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCccccceeeecC--CCCccccccccccccCccccCCCCCCCCCCCC--Cchhhc
Q 010335 359 GPPGSIPCPLCRHGIVSFTKLP--GSPVKDIKQPLSLGLCTPCMLHTRDAECESPA--CAPEIR 418 (513)
Q Consensus 359 ~~~~~~~Cp~Cr~~i~~~~~~~--~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~--~~~~~~ 418 (513)
.||.+..||+|+..+..=+.+. |- -||.+|+-.--...+.||+ |...+.
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGy-----------VfCY~Ci~~Yv~~~~~CPVT~~p~~v~ 348 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGY-----------VFCYPCIFSYVVNYGHCPVTGYPASVD 348 (357)
T ss_pred CCCccccChhHHhccCCCceEEecce-----------EEeHHHHHHHHHhcCCCCccCCcchHH
Confidence 4556678999998887644443 44 6899997555446778886 444444
No 296
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=20.60 E-value=79 Score=26.03 Aligned_cols=35 Identities=34% Similarity=0.583 Sum_probs=28.2
Q ss_pred ccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccc
Q 010335 326 RACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHG 372 (513)
Q Consensus 326 ~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~ 372 (513)
..|+|+=..|.|-+-..|.-+...+++ +||+|..+
T Consensus 72 ~EC~VaWG~CNHaFH~hCisrWlktr~------------vCPLdn~e 106 (114)
T KOG2930|consen 72 EECTVAWGVCNHAFHFHCISRWLKTRN------------VCPLDNKE 106 (114)
T ss_pred CceEEEeeecchHHHHHHHHHHHhhcC------------cCCCcCcc
Confidence 357888889999998899988877754 59999765
No 297
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=20.54 E-value=77 Score=31.80 Aligned_cols=46 Identities=20% Similarity=0.391 Sum_probs=31.1
Q ss_pred CCCCCCc-cccceeeecCCCCccccccccccccCccccCCCCCCCCCCCCCch
Q 010335 364 IPCPLCR-HGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAP 415 (513)
Q Consensus 364 ~~Cp~Cr-~~i~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~ 415 (513)
..||+|- .++.+++.+.+. ...--..|..|.++-.-.-..||.|-.
T Consensus 188 ~~CPvCGs~P~~s~v~~~~~------~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 188 QFCPVCGSMPVSSVVQIGTT------QGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCcchhheeeccCC------CCceEEEcCCCCCcccccCccCCCCCC
Confidence 4699998 445565544221 122347899998777777889999975
No 298
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=20.32 E-value=12 Score=40.25 Aligned_cols=157 Identities=13% Similarity=0.025 Sum_probs=0.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH-----------cCCHHH-HHHHHhcCCCCCcccC---
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR-----------YGHWEV-VQTLLLFRCNVTRADY--- 109 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~-----------~g~~ei-Vk~LL~~ga~~~~~~~--- 109 (513)
+.++.+++...|....+......+.. .....++.++++. ++..++ +++.++....+.....
T Consensus 55 ~~~~~~l~~~~g~~~~~~~a~~fDv~----~~g~~~~gl~~aml~a~~~~~~P~~~a~~~~~~~~~~~~~~ll~~~~~~~ 130 (503)
T KOG0513|consen 55 AYLELRLQNIDGDPSAARLADYFDVS----IAGTNTGGLITAMLFAPNDCGRPRFGATDILWKFNLEKAPKLLEKFDDPN 130 (503)
T ss_pred cccHHHHHhccCChHhhHhhhccCce----eeccCCchhhhhhhhccccccCccccccchhhhhhhcCCCcccccccccc
Q ss_pred ---CCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHH
Q 010335 110 ---LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 186 (513)
Q Consensus 110 ---~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa 186 (513)
.+..++++........+.+..++..+.. ....+..|.|+||.+.
T Consensus 131 ~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~---------------------------------~~~~~~~g~t~L~~tl 177 (503)
T KOG0513|consen 131 FIKGDLNLALRILVSGDKYSGAEVLLTKYEI---------------------------------ADAREVLGNTKLHLTL 177 (503)
T ss_pred ccccccccceeeeecCccccceeeccccccc---------------------------------chhhhhcCCceeeeec
Q ss_pred HcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcH
Q 010335 187 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 257 (513)
Q Consensus 187 ~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~Tp 257 (513)
..++. ++.+.-.+.+ +.+|+++.+..+....+--+++.++..+..+..|++.
T Consensus 178 ~~~~~--~~~i~~ldl~-----------------~~~P~lf~~~~~~~~~~v~~~~~~~~~~c~~t~~sa~ 229 (503)
T KOG0513|consen 178 TKENL--LVVIPCLDLK-----------------SLTPNLFSIYDALGTKIVPLLDFKAIDICIDTYGSAA 229 (503)
T ss_pred cCCCc--ceEEEeeccC-----------------cCCceeeeeeccccccchhhhhhhhhhhhhccccccC
No 299
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=20.31 E-value=39 Score=29.23 Aligned_cols=15 Identities=47% Similarity=1.006 Sum_probs=11.8
Q ss_pred CCCCCCCccccceee
Q 010335 363 SIPCPLCRHGIVSFT 377 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~ 377 (513)
.|.||.||+.|--++
T Consensus 6 ei~CPhCRq~ipALt 20 (161)
T PF09654_consen 6 EIQCPHCRQTIPALT 20 (161)
T ss_pred cCcCchhhcccchhe
Confidence 578999999876554
No 300
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=20.28 E-value=47 Score=20.48 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=13.8
Q ss_pred CCCCCccccceeeecCCCCccccccccccccCccc
Q 010335 365 PCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPC 399 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~~~~~~~~~~~~~~~c~~c 399 (513)
+||-|.+.|..+..-.. +..+|..|
T Consensus 3 ~C~rC~~~~~~~~~~~r----------~~~~C~rC 27 (30)
T PF06827_consen 3 KCPRCWNYIEDIGINGR----------STYLCPRC 27 (30)
T ss_dssp B-TTT--BBEEEEETTE----------EEEE-TTT
T ss_pred cCccCCCcceEeEecCC----------CCeECcCC
Confidence 59999988777665332 34778777
Done!