Query 010335
Match_columns 513
No_of_seqs 439 out of 2223
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 04:34:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyh_A HN1;, notch 1, ankyrin 100.0 4.2E-40 1.4E-44 320.0 21.3 226 8-278 8-247 (253)
2 3aji_A 26S proteasome non-ATPa 100.0 2.1E-39 7.3E-44 309.5 23.9 222 10-276 6-227 (231)
3 1k1a_A B-cell lymphoma 3-encod 100.0 2.1E-39 7.3E-44 311.0 22.0 224 8-277 7-239 (241)
4 2xai_A ASB-9, ankyrin repeat a 100.0 2.8E-39 9.5E-44 315.9 22.7 218 10-277 3-220 (261)
5 1wdy_A 2-5A-dependent ribonucl 100.0 3.4E-38 1.2E-42 309.2 28.8 231 10-275 5-240 (285)
6 3d9h_A CDNA FLJ77766, highly s 100.0 4.7E-39 1.6E-43 318.7 22.9 225 8-282 57-281 (285)
7 3b7b_A Euchromatic histone-lys 100.0 1.4E-38 4.7E-43 305.1 24.6 217 8-270 9-226 (237)
8 4b93_B Ankyrin repeat domain-c 100.0 2E-39 6.9E-44 319.0 17.1 219 11-273 12-238 (269)
9 1oy3_D Transcription factor in 100.0 1.6E-38 5.5E-43 311.9 22.8 214 8-265 7-269 (282)
10 1wdy_A 2-5A-dependent ribonucl 100.0 1.3E-37 4.5E-42 305.0 27.7 226 8-278 37-277 (285)
11 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-37 3.8E-42 315.2 27.3 269 10-295 24-318 (351)
12 3ljn_A Hypothetical protein; a 100.0 3.1E-38 1.1E-42 323.0 21.9 222 10-279 20-269 (364)
13 1n11_A Ankyrin; clathrin, BAND 100.0 2.1E-37 7E-42 324.6 27.9 276 8-307 111-390 (437)
14 2f8y_A Notch homolog 1, transl 100.0 5E-38 1.7E-42 298.4 20.1 217 21-282 2-219 (223)
15 1n11_A Ankyrin; clathrin, BAND 100.0 2E-37 6.9E-42 324.6 26.5 254 8-277 12-268 (437)
16 3d9h_A CDNA FLJ77766, highly s 100.0 1.8E-37 6E-42 307.4 24.3 240 8-297 13-262 (285)
17 2dzn_A Probable 26S proteasome 100.0 1.1E-37 3.7E-42 296.8 21.9 217 11-275 3-226 (228)
18 2fo1_E LIN-12 protein; beta-ba 100.0 1E-37 3.4E-42 321.1 19.3 232 9-278 124-370 (373)
19 1s70_B 130 kDa myosin-binding 100.0 7.2E-38 2.5E-42 310.7 17.4 248 10-276 40-287 (299)
20 3utm_A Tankyrase-1; tankyrase, 100.0 8.5E-37 2.9E-41 308.7 25.2 224 8-280 56-335 (351)
21 3eu9_A Huntingtin-interacting 100.0 6.4E-37 2.2E-41 292.7 22.0 224 10-278 9-234 (240)
22 1oy3_D Transcription factor in 100.0 1.4E-36 4.7E-41 298.2 20.8 241 43-296 7-264 (282)
23 4g8k_A 2-5A-dependent ribonucl 100.0 1.1E-35 3.9E-40 300.7 28.1 240 11-275 26-294 (337)
24 3b7b_A Euchromatic histone-lys 100.0 2.1E-35 7E-40 283.0 24.2 208 41-295 7-215 (237)
25 2fo1_E LIN-12 protein; beta-ba 100.0 1.6E-36 5.4E-41 312.1 15.1 255 8-307 92-359 (373)
26 1yyh_A HN1;, notch 1, ankyrin 100.0 1.1E-35 3.6E-40 289.0 18.9 216 43-309 8-238 (253)
27 2xai_A ASB-9, ankyrin repeat a 100.0 3.4E-35 1.2E-39 286.8 22.6 203 45-297 3-206 (261)
28 1k1a_A B-cell lymphoma 3-encod 100.0 6.2E-35 2.1E-39 279.9 23.5 213 42-298 6-224 (241)
29 3kea_A K1L; tropism, ANK repea 100.0 1.6E-36 5.5E-41 300.5 12.7 209 18-276 7-217 (285)
30 2rfa_A Transient receptor pote 100.0 3.2E-35 1.1E-39 280.9 20.2 204 45-279 3-222 (232)
31 3kea_A K1L; tropism, ANK repea 100.0 2.9E-35 9.9E-40 291.5 17.0 214 8-278 29-245 (285)
32 2dzn_A Probable 26S proteasome 100.0 2.1E-34 7E-39 274.1 21.5 208 45-297 2-215 (228)
33 4g8k_A 2-5A-dependent ribonucl 100.0 1.4E-33 4.7E-38 285.4 28.4 250 10-278 59-325 (337)
34 3hra_A Ankyrin repeat family p 100.0 3.5E-34 1.2E-38 267.3 21.9 188 46-276 6-200 (201)
35 1ikn_D Protein (I-kappa-B-alph 100.0 1E-35 3.5E-40 285.5 11.2 200 44-281 7-211 (236)
36 1ikn_D Protein (I-kappa-B-alph 100.0 1.2E-35 4.1E-40 285.0 10.5 210 9-264 7-229 (236)
37 2f8y_A Notch homolog 1, transl 100.0 1.8E-33 6.1E-38 266.9 25.2 195 8-248 23-218 (223)
38 3ljn_A Hypothetical protein; a 100.0 1.5E-34 5.3E-39 295.6 18.6 222 41-295 16-249 (364)
39 1s70_B 130 kDa myosin-binding 100.0 3E-34 1E-38 284.7 19.0 243 15-295 3-270 (299)
40 2rfa_A Transient receptor pote 100.0 5.5E-34 1.9E-38 272.3 19.9 196 10-250 3-226 (232)
41 3hra_A Ankyrin repeat family p 100.0 2.4E-33 8.3E-38 261.6 23.3 191 9-244 4-201 (201)
42 3aji_A 26S proteasome non-ATPa 100.0 9.8E-34 3.4E-38 270.2 20.3 194 8-247 38-231 (231)
43 4gpm_A Engineered protein OR26 100.0 1.2E-33 4.2E-38 258.1 19.9 159 47-249 6-164 (169)
44 2etb_A Transient receptor pote 100.0 1.4E-34 4.8E-39 281.1 11.6 204 45-278 2-245 (256)
45 4b93_B Ankyrin repeat domain-c 100.0 1.4E-33 4.7E-38 277.3 16.9 204 46-297 12-225 (269)
46 2pnn_A Transient receptor pote 100.0 7.2E-34 2.5E-38 278.9 13.8 209 8-259 11-272 (273)
47 4gpm_A Engineered protein OR26 100.0 1.5E-32 5.3E-37 250.8 20.5 161 11-207 5-165 (169)
48 2etb_A Transient receptor pote 100.0 2E-33 6.9E-38 272.9 13.9 196 10-248 2-248 (256)
49 3eu9_A Huntingtin-interacting 100.0 4.2E-32 1.4E-36 259.2 21.3 211 45-306 9-222 (240)
50 2pnn_A Transient receptor pote 100.0 3.2E-33 1.1E-37 274.2 10.7 208 43-280 11-259 (273)
51 1sw6_A Regulatory protein SWI6 100.0 3.7E-33 1.3E-37 281.9 10.7 219 13-265 100-327 (327)
52 3jxi_A Vanilloid receptor-rela 100.0 7.2E-33 2.4E-37 269.4 12.2 196 10-248 5-252 (260)
53 3jxi_A Vanilloid receptor-rela 100.0 1.8E-32 6.1E-37 266.6 11.5 204 46-279 6-250 (260)
54 4hbd_A KN motif and ankyrin re 100.0 4.1E-32 1.4E-36 267.7 11.0 189 46-278 77-274 (276)
55 3v30_A DNA-binding protein rfx 100.0 3.1E-31 1.1E-35 241.5 15.5 168 46-257 3-171 (172)
56 1sw6_A Regulatory protein SWI6 100.0 4.6E-31 1.6E-35 266.6 13.8 222 21-297 58-323 (327)
57 3v31_A Ankyrin repeat family A 100.0 2.5E-30 8.5E-35 234.4 16.3 160 44-247 2-161 (167)
58 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.9E-30 9.9E-35 232.4 16.6 156 46-246 6-162 (162)
59 2vge_A RELA-associated inhibit 100.0 6.8E-33 2.3E-37 265.8 -0.7 200 26-272 1-206 (229)
60 4hbd_A KN motif and ankyrin re 100.0 7.2E-31 2.5E-35 258.7 12.6 189 12-244 78-273 (276)
61 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.2E-29 4.2E-34 230.7 19.8 156 45-244 14-169 (169)
62 2rfm_A Putative ankyrin repeat 100.0 6.6E-30 2.2E-34 237.2 16.8 158 43-244 33-190 (192)
63 2rfm_A Putative ankyrin repeat 100.0 6.3E-30 2.2E-34 237.3 15.0 162 71-276 28-189 (192)
64 1ihb_A P18-INK4C(INK6), cyclin 100.0 4.4E-29 1.5E-33 224.6 18.0 158 10-203 5-162 (162)
65 3f6q_A Integrin-linked protein 100.0 3.9E-29 1.3E-33 229.4 17.8 165 46-254 6-171 (179)
66 3v30_A DNA-binding protein rfx 100.0 2.6E-29 9E-34 228.8 15.9 165 11-210 3-167 (172)
67 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.5E-28 8.6E-33 222.0 19.9 158 8-201 12-169 (169)
68 3v31_A Ankyrin repeat family A 100.0 8.2E-29 2.8E-33 224.4 16.3 158 77-278 2-159 (167)
69 1awc_B Protein (GA binding pro 100.0 2.6E-28 9E-33 218.0 18.1 149 47-240 4-152 (153)
70 1ycs_B 53BP2, P53BP2; ankyrin 100.0 5E-30 1.7E-34 247.1 7.1 186 45-277 5-202 (239)
71 3twr_A Tankyrase-2; ankyrin re 100.0 1.5E-28 5E-33 222.2 16.1 155 46-245 9-164 (165)
72 1awc_B Protein (GA binding pro 100.0 2.4E-28 8E-33 218.3 16.6 152 78-274 2-153 (153)
73 1bd8_A P19INK4D CDK4/6 inhibit 100.0 6.7E-28 2.3E-32 215.6 16.7 151 46-242 3-154 (156)
74 3f6q_A Integrin-linked protein 100.0 5.1E-28 1.7E-32 222.0 15.8 167 8-210 3-170 (179)
75 3twr_A Tankyrase-2; ankyrin re 100.0 4.1E-28 1.4E-32 219.3 14.8 162 5-202 3-164 (165)
76 1ycs_B 53BP2, P53BP2; ankyrin 100.0 6.7E-30 2.3E-34 246.1 1.3 213 9-261 4-225 (239)
77 1bd8_A P19INK4D CDK4/6 inhibit 100.0 3.2E-27 1.1E-31 211.2 18.0 153 10-200 2-155 (156)
78 2vge_A RELA-associated inhibit 99.9 2.4E-30 8.3E-35 248.0 -3.9 185 9-241 20-208 (229)
79 2aja_A Ankyrin repeat family p 99.9 1E-29 3.5E-34 261.1 -0.7 213 11-279 93-344 (376)
80 1d9s_A Cyclin-dependent kinase 99.9 3.7E-26 1.3E-30 200.0 11.9 133 69-246 3-136 (136)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 3.2E-26 1.1E-30 205.3 9.9 139 45-261 12-151 (156)
82 2aja_A Ankyrin repeat family p 99.9 3.2E-28 1.1E-32 249.9 -4.4 192 13-269 68-269 (376)
83 1d9s_A Cyclin-dependent kinase 99.9 2.6E-25 8.9E-30 194.6 13.3 133 34-203 3-136 (136)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 1.1E-25 3.9E-30 201.7 11.0 125 8-136 10-135 (156)
85 3t8k_A Uncharacterized protein 99.9 2.7E-26 9.2E-31 212.7 6.8 106 12-121 8-124 (186)
86 3t8k_A Uncharacterized protein 99.9 1.3E-25 4.6E-30 208.0 8.8 88 47-137 8-106 (186)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.7E-24 2E-28 182.1 16.0 125 45-203 2-126 (126)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 4.1E-24 1.4E-28 186.9 14.6 122 46-201 15-136 (136)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.1E-23 3.8E-28 180.2 15.5 126 77-246 1-126 (126)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 2.2E-23 7.6E-28 182.3 15.6 124 9-135 13-136 (136)
91 3c5r_A BARD-1, BRCA1-associate 99.9 7E-24 2.4E-28 185.5 9.8 134 68-246 1-134 (137)
92 3c5r_A BARD-1, BRCA1-associate 99.9 8.8E-24 3E-28 184.9 9.9 133 101-278 1-133 (137)
93 2b0o_E UPLC1; arfgap, structur 99.9 3.8E-23 1.3E-27 206.1 14.1 139 46-234 152-299 (301)
94 3ui2_A Signal recognition part 99.9 1.2E-23 4.2E-28 203.1 10.0 141 45-246 45-185 (244)
95 3deo_A Signal recognition part 99.9 2.6E-23 9E-28 191.5 11.3 166 17-243 7-181 (183)
96 3ehr_A Osteoclast-stimulating 99.9 3E-23 1E-27 196.8 7.3 137 75-255 70-207 (222)
97 2b0o_E UPLC1; arfgap, structur 99.9 1.8E-22 6.2E-27 201.2 11.9 142 10-191 151-299 (301)
98 3deo_A Signal recognition part 99.9 2.8E-22 9.6E-27 184.5 11.8 137 10-200 44-181 (183)
99 3ehr_A Osteoclast-stimulating 99.9 1.4E-22 4.7E-27 192.3 9.8 132 45-210 73-205 (222)
100 3ui2_A Signal recognition part 99.9 3.2E-22 1.1E-26 193.1 12.5 142 10-205 45-187 (244)
101 3aaa_C Myotrophin, protein V-1 99.9 4E-22 1.4E-26 171.0 11.3 117 8-127 5-121 (123)
102 3aaa_C Myotrophin, protein V-1 99.9 3.8E-22 1.3E-26 171.2 9.8 112 111-265 6-117 (123)
103 1dcq_A PYK2-associated protein 99.9 5E-21 1.7E-25 188.6 15.4 196 45-281 66-265 (278)
104 3lvq_E ARF-GAP with SH3 domain 99.9 6.1E-21 2.1E-25 203.4 16.7 127 46-206 133-268 (497)
105 3jue_A Arfgap with coiled-coil 99.8 6.6E-21 2.3E-25 194.8 15.3 124 11-135 200-324 (368)
106 1dcq_A PYK2-associated protein 99.8 1.5E-20 5.2E-25 185.1 16.4 127 12-139 132-265 (278)
107 3jue_A Arfgap with coiled-coil 99.8 8.4E-21 2.9E-25 194.1 14.2 161 46-247 200-365 (368)
108 3lvq_E ARF-GAP with SH3 domain 99.8 2E-20 6.7E-25 199.4 15.0 138 78-265 132-278 (497)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 3.6E-20 1.2E-24 150.7 12.5 91 45-136 2-92 (93)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 5.1E-20 1.7E-24 149.8 9.5 91 177-277 1-91 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.8 2.2E-19 7.4E-24 151.8 7.8 106 110-258 7-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 6.1E-19 2.1E-23 149.0 7.9 109 4-115 3-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 4.8E-18 1.6E-22 142.8 9.0 94 171-274 17-110 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 2E-17 6.8E-22 139.0 10.5 89 42-131 21-109 (110)
115 2vje_A E3 ubiquitin-protein li 98.5 4.9E-08 1.7E-12 72.9 3.9 55 313-379 4-61 (64)
116 2vje_B MDM4 protein; proto-onc 98.4 1.5E-07 5.2E-12 70.0 3.8 53 315-379 5-60 (63)
117 2ea5_A Cell growth regulator w 98.3 3.5E-07 1.2E-11 69.1 3.9 52 314-381 12-64 (68)
118 4ap4_A E3 ubiquitin ligase RNF 98.2 2.3E-07 7.9E-12 79.8 -0.3 97 316-424 6-130 (133)
119 2yho_A E3 ubiquitin-protein li 98.0 2.6E-06 8.9E-11 66.3 3.4 49 316-380 17-66 (79)
120 4ic3_A E3 ubiquitin-protein li 98.0 4.4E-06 1.5E-10 64.2 3.6 48 316-379 23-71 (74)
121 2ecg_A Baculoviral IAP repeat- 97.8 5.7E-06 1.9E-10 63.7 1.9 47 317-379 25-72 (75)
122 2egp_A Tripartite motif-contai 97.8 4.2E-05 1.4E-09 59.2 6.4 57 314-375 9-65 (79)
123 2d8t_A Dactylidin, ring finger 97.8 1.8E-05 6.3E-10 60.0 4.0 50 314-375 12-61 (71)
124 1chc_A Equine herpes virus-1 r 97.7 1.9E-05 6.6E-10 59.3 3.2 53 316-380 4-57 (68)
125 2ecw_A Tripartite motif-contai 97.7 4.6E-05 1.6E-09 59.7 5.4 55 315-375 17-71 (85)
126 2ecm_A Ring finger and CHY zin 97.7 2.6E-05 9E-10 55.7 3.5 47 316-374 4-54 (55)
127 2ysl_A Tripartite motif-contai 97.7 3.8E-05 1.3E-09 58.4 4.5 51 315-374 18-68 (73)
128 4ayc_A E3 ubiquitin-protein li 97.6 3.6E-05 1.2E-09 66.7 4.1 48 317-376 53-100 (138)
129 1iym_A EL5; ring-H2 finger, ub 97.6 4.4E-05 1.5E-09 54.6 3.7 48 315-374 3-54 (55)
130 2ecv_A Tripartite motif-contai 97.6 7.1E-05 2.4E-09 58.6 5.0 62 315-382 17-78 (85)
131 2ep4_A Ring finger protein 24; 97.6 4E-05 1.4E-09 58.5 3.4 55 315-381 13-70 (74)
132 2djb_A Polycomb group ring fin 97.6 7E-05 2.4E-09 56.9 4.5 51 314-376 12-63 (72)
133 2ea6_A Ring finger protein 4; 97.6 3.7E-05 1.3E-09 57.7 2.9 49 314-374 12-67 (69)
134 2kiz_A E3 ubiquitin-protein li 97.5 9.6E-05 3.3E-09 55.5 5.2 51 314-376 11-64 (69)
135 1t1h_A Gspef-atpub14, armadill 97.5 5.6E-05 1.9E-09 58.3 3.5 60 315-385 6-65 (78)
136 2csy_A Zinc finger protein 183 97.5 8.5E-05 2.9E-09 57.8 4.4 48 315-374 13-60 (81)
137 3ng2_A RNF4, snurf, ring finge 97.5 4E-05 1.4E-09 57.9 2.3 50 313-374 6-62 (71)
138 2ecn_A Ring finger protein 141 97.5 3.9E-05 1.3E-09 57.9 2.2 50 315-377 13-62 (70)
139 2ecy_A TNF receptor-associated 97.5 6E-05 2E-09 56.2 2.9 49 315-374 13-61 (66)
140 2l0b_A E3 ubiquitin-protein li 97.4 7.4E-05 2.5E-09 59.7 3.6 49 314-374 37-88 (91)
141 1e4u_A Transcriptional repress 97.4 7.6E-05 2.6E-09 57.7 3.5 51 314-375 8-62 (78)
142 2ct2_A Tripartite motif protei 97.4 0.00013 4.5E-09 57.5 4.8 52 314-374 12-67 (88)
143 1g25_A CDK-activating kinase a 97.4 6.8E-05 2.3E-09 55.7 2.7 48 317-375 3-55 (65)
144 3ztg_A E3 ubiquitin-protein li 97.4 0.00015 5E-09 57.9 4.7 51 314-374 10-61 (92)
145 2ect_A Ring finger protein 126 97.4 0.00021 7.1E-09 55.1 5.4 55 314-380 12-69 (78)
146 1x4j_A Ring finger protein 38; 97.4 7.4E-05 2.5E-09 57.2 2.7 49 315-375 21-72 (75)
147 2yur_A Retinoblastoma-binding 97.4 0.00013 4.5E-09 55.7 3.8 50 315-374 13-63 (74)
148 2xeu_A Ring finger protein 4; 97.3 7.3E-05 2.5E-09 55.1 2.1 48 316-375 2-56 (64)
149 2ea5_A Cell growth regulator w 97.3 0.00011 3.7E-09 55.2 2.7 52 363-428 15-67 (68)
150 3fl2_A E3 ubiquitin-protein li 97.3 0.00013 4.5E-09 61.8 3.5 49 316-375 51-99 (124)
151 3t6p_A Baculoviral IAP repeat- 97.3 0.00013 4.4E-09 72.9 3.8 49 316-380 294-343 (345)
152 2y1n_A E3 ubiquitin-protein li 97.2 0.00019 6.4E-09 72.2 4.4 52 318-380 333-384 (389)
153 1jm7_A BRCA1, breast cancer ty 97.2 0.00013 4.5E-09 60.4 2.7 52 316-376 20-71 (112)
154 1z6u_A NP95-like ring finger p 97.2 0.0002 6.7E-09 62.9 3.5 50 316-376 77-126 (150)
155 3l11_A E3 ubiquitin-protein li 97.2 0.00012 4.2E-09 61.1 2.0 50 315-375 13-62 (115)
156 3lrq_A E3 ubiquitin-protein li 97.2 0.00018 6.1E-09 58.5 2.9 50 315-375 20-70 (100)
157 1bor_A Transcription factor PM 97.2 9.1E-05 3.1E-09 53.3 0.9 45 315-374 4-48 (56)
158 2y43_A E3 ubiquitin-protein li 97.1 0.00028 9.6E-09 57.1 3.5 48 316-375 21-69 (99)
159 4ic3_A E3 ubiquitin-protein li 97.1 0.0002 6.9E-09 54.7 2.5 47 365-426 26-74 (74)
160 2d8t_A Dactylidin, ring finger 97.1 0.00019 6.4E-09 54.3 2.2 51 362-423 14-65 (71)
161 2ckl_B Ubiquitin ligase protei 97.1 0.0003 1E-08 62.7 3.6 49 316-375 53-102 (165)
162 2ckl_A Polycomb group ring fin 97.1 0.00037 1.3E-08 57.4 3.8 49 315-375 13-62 (108)
163 2ysj_A Tripartite motif-contai 97.0 0.00052 1.8E-08 50.4 3.5 47 314-369 17-63 (63)
164 2ecg_A Baculoviral IAP repeat- 97.0 0.00018 6.1E-09 55.1 0.9 47 365-426 27-75 (75)
165 2ecl_A Ring-box protein 2; RNF 96.9 0.00055 1.9E-08 53.2 3.5 47 316-374 14-75 (81)
166 1v87_A Deltex protein 2; ring- 96.9 0.00059 2E-08 56.7 3.9 54 316-376 24-95 (114)
167 3hct_A TNF receptor-associated 96.9 0.00055 1.9E-08 57.3 3.6 58 313-381 14-71 (118)
168 2yho_A E3 ubiquitin-protein li 96.9 0.00041 1.4E-08 53.7 2.5 47 365-426 20-68 (79)
169 2ecj_A Tripartite motif-contai 96.8 0.0012 4.1E-08 47.3 4.6 47 314-369 12-58 (58)
170 2ecn_A Ring finger protein 141 96.8 0.00037 1.3E-08 52.4 1.7 52 362-425 14-66 (70)
171 2vje_B MDM4 protein; proto-onc 96.7 0.00012 4E-09 54.1 -1.6 51 365-425 9-62 (63)
172 2vje_A E3 ubiquitin-protein li 96.7 0.00015 5.2E-09 53.7 -1.2 52 364-425 9-63 (64)
173 1rmd_A RAG1; V(D)J recombinati 96.7 0.0008 2.7E-08 56.1 3.1 50 316-376 22-71 (116)
174 3ng2_A RNF4, snurf, ring finge 96.7 0.00015 5.1E-09 54.7 -1.3 53 360-423 7-67 (71)
175 2djb_A Polycomb group ring fin 96.7 0.00039 1.3E-08 52.6 0.9 53 363-426 15-69 (72)
176 1jm7_B BARD1, BRCA1-associated 96.5 0.0009 3.1E-08 55.9 1.9 46 316-375 21-67 (117)
177 2ea6_A Ring finger protein 4; 96.4 0.00038 1.3E-08 52.0 -0.6 51 359-420 11-69 (69)
178 1iym_A EL5; ring-H2 finger, ub 96.4 0.0014 4.7E-08 46.5 2.2 43 364-417 6-53 (55)
179 2ect_A Ring finger protein 126 96.4 0.002 7E-08 49.3 3.2 52 362-424 14-69 (78)
180 2ysl_A Tripartite motif-contai 96.4 0.0011 3.9E-08 50.0 1.7 49 362-421 19-71 (73)
181 1bor_A Transcription factor PM 96.3 0.0031 1E-07 45.1 3.8 43 363-419 6-49 (56)
182 2egp_A Tripartite motif-contai 96.3 0.0021 7.3E-08 49.3 3.2 48 362-420 11-66 (79)
183 3knv_A TNF receptor-associated 96.3 0.00091 3.1E-08 57.9 1.1 49 314-373 28-76 (141)
184 3dpl_R Ring-box protein 1; ubi 96.3 0.0025 8.5E-08 52.2 3.6 46 316-373 36-99 (106)
185 2ecm_A Ring finger and CHY zin 96.3 0.00071 2.4E-08 48.0 0.0 44 364-418 6-54 (55)
186 4ayc_A E3 ubiquitin-protein li 96.2 0.00095 3.2E-08 57.6 0.3 45 365-420 55-100 (138)
187 2ecy_A TNF receptor-associated 96.1 0.0011 3.7E-08 49.1 0.3 50 361-421 13-64 (66)
188 3vk6_A E3 ubiquitin-protein li 96.1 0.0054 1.8E-07 48.7 4.2 52 319-381 3-55 (101)
189 1chc_A Equine herpes virus-1 r 96.0 0.0013 4.5E-08 48.9 0.3 45 365-420 7-53 (68)
190 2kr4_A Ubiquitin conjugation f 95.9 0.0034 1.1E-07 49.2 2.3 56 315-382 12-67 (85)
191 4ap4_A E3 ubiquitin ligase RNF 95.9 0.0029 9.9E-08 53.7 2.1 49 315-375 70-125 (133)
192 2c2l_A CHIP, carboxy terminus 95.8 0.0054 1.9E-07 59.1 4.0 59 315-384 206-264 (281)
193 2csy_A Zinc finger protein 183 95.8 0.0019 6.5E-08 50.0 0.5 46 362-418 14-60 (81)
194 2ecv_A Tripartite motif-contai 95.8 0.0035 1.2E-07 48.6 2.0 48 362-420 18-72 (85)
195 2ct2_A Tripartite motif protei 95.7 0.0018 6.3E-08 50.8 0.3 51 362-423 14-72 (88)
196 3hcs_A TNF receptor-associated 95.7 0.0049 1.7E-07 55.0 3.0 57 314-381 15-71 (170)
197 2xeu_A Ring finger protein 4; 95.7 0.0008 2.7E-08 49.3 -1.9 49 364-423 4-60 (64)
198 2kre_A Ubiquitin conjugation f 95.7 0.003 1E-07 51.2 1.3 56 315-382 27-82 (100)
199 3t6p_A Baculoviral IAP repeat- 95.6 0.0047 1.6E-07 61.5 2.7 47 365-426 297-345 (345)
200 2yur_A Retinoblastoma-binding 95.6 0.0031 1.1E-07 47.9 1.1 48 361-419 13-64 (74)
201 2ep4_A Ring finger protein 24; 95.5 0.0023 7.8E-08 48.5 -0.1 52 362-424 14-69 (74)
202 2ecw_A Tripartite motif-contai 95.5 0.0033 1.1E-07 48.8 0.8 48 362-420 18-72 (85)
203 1wgm_A Ubiquitin conjugation f 95.5 0.0037 1.3E-07 50.4 1.1 55 316-382 21-76 (98)
204 2kiz_A E3 ubiquitin-protein li 95.4 0.0028 9.5E-08 47.3 0.3 48 362-420 13-64 (69)
205 1e4u_A Transcriptional repress 95.4 0.0055 1.9E-07 47.1 1.9 49 363-422 11-65 (78)
206 1t1h_A Gspef-atpub14, armadill 95.3 0.0032 1.1E-07 48.2 0.3 50 360-420 5-56 (78)
207 4a0k_B E3 ubiquitin-protein li 95.3 0.0031 1.1E-07 52.5 0.2 46 316-373 47-110 (117)
208 3l11_A E3 ubiquitin-protein li 95.3 0.0067 2.3E-07 50.3 2.2 45 364-419 16-62 (115)
209 2d8s_A Cellular modulator of i 95.2 0.012 4.1E-07 45.4 3.3 57 313-379 11-74 (80)
210 1g25_A CDK-activating kinase a 95.2 0.0042 1.4E-07 45.7 0.6 48 364-422 4-58 (65)
211 1jm7_B BARD1, BRCA1-associated 95.2 0.012 4.3E-07 48.8 3.4 43 364-419 23-67 (117)
212 2l0b_A E3 ubiquitin-protein li 95.1 0.002 6.7E-08 51.2 -1.7 46 363-419 40-89 (91)
213 3fl2_A E3 ubiquitin-protein li 94.9 0.0037 1.3E-07 52.7 -0.5 45 365-420 54-100 (124)
214 2y43_A E3 ubiquitin-protein li 94.8 0.005 1.7E-07 49.6 -0.1 46 364-420 23-70 (99)
215 1jm7_A BRCA1, breast cancer ty 94.8 0.0056 1.9E-07 50.4 0.2 45 365-420 23-71 (112)
216 2ckl_A Polycomb group ring fin 94.7 0.0049 1.7E-07 50.5 -0.3 46 364-420 16-63 (108)
217 2y1n_A E3 ubiquitin-protein li 94.7 0.0051 1.8E-07 61.8 -0.2 52 364-426 333-386 (389)
218 3lrq_A E3 ubiquitin-protein li 94.6 0.0038 1.3E-07 50.5 -1.1 46 365-421 24-72 (100)
219 2yu4_A E3 SUMO-protein ligase 94.5 0.012 4E-07 47.0 1.5 62 315-382 5-70 (94)
220 2f42_A STIP1 homology and U-bo 94.4 0.0096 3.3E-07 53.4 0.9 59 315-384 104-162 (179)
221 2ecl_A Ring-box protein 2; RNF 94.3 0.0081 2.8E-07 46.5 0.2 27 394-420 51-77 (81)
222 1z6u_A NP95-like ring finger p 94.3 0.0058 2E-07 53.4 -0.8 45 365-420 80-126 (150)
223 1x4j_A Ring finger protein 38; 94.1 0.0033 1.1E-07 47.8 -2.4 46 363-419 23-72 (75)
224 2ecj_A Tripartite motif-contai 93.9 0.029 1E-06 39.8 2.5 41 362-413 14-58 (58)
225 3ztg_A E3 ubiquitin-protein li 93.8 0.0073 2.5E-07 47.8 -1.0 47 360-417 10-60 (92)
226 1v87_A Deltex protein 2; ring- 93.8 0.011 3.7E-07 48.9 -0.1 47 364-421 26-96 (114)
227 2ckl_B Ubiquitin ligase protei 93.5 0.009 3.1E-07 53.0 -1.0 44 365-419 56-102 (165)
228 1rmd_A RAG1; V(D)J recombinati 93.4 0.0099 3.4E-07 49.3 -0.9 47 365-422 25-73 (116)
229 1wim_A KIAA0161 protein; ring 93.1 0.014 4.9E-07 46.4 -0.5 53 316-372 4-61 (94)
230 3hct_A TNF receptor-associated 93.0 0.0095 3.3E-07 49.6 -1.7 48 363-421 18-67 (118)
231 3htk_C E3 SUMO-protein ligase 92.8 0.079 2.7E-06 50.0 4.1 59 314-382 178-239 (267)
232 3vk6_A E3 ubiquitin-protein li 92.6 0.019 6.5E-07 45.6 -0.4 57 365-432 3-62 (101)
233 2ysj_A Tripartite motif-contai 92.0 0.032 1.1E-06 40.5 0.3 41 362-413 19-63 (63)
234 4a0k_B E3 ubiquitin-protein li 91.3 0.038 1.3E-06 45.9 0.0 25 394-418 87-111 (117)
235 3dpl_R Ring-box protein 1; ubi 91.1 0.038 1.3E-06 45.0 -0.1 25 394-418 76-100 (106)
236 2ct0_A Non-SMC element 1 homol 90.1 0.23 7.8E-06 37.5 3.4 51 314-374 12-63 (74)
237 2kre_A Ubiquitin conjugation f 89.4 0.097 3.3E-06 42.1 1.0 51 359-420 25-76 (100)
238 3knv_A TNF receptor-associated 89.0 0.033 1.1E-06 48.0 -2.3 44 363-417 31-76 (141)
239 2kr4_A Ubiquitin conjugation f 88.0 0.09 3.1E-06 40.8 -0.2 50 360-420 11-61 (85)
240 1wgm_A Ubiquitin conjugation f 86.9 0.23 7.7E-06 39.7 1.6 51 359-420 18-70 (98)
241 3hcs_A TNF receptor-associated 85.9 0.087 3E-06 46.7 -1.5 49 362-421 17-67 (170)
242 1vyx_A ORF K3, K3RING; zinc-bi 85.5 0.41 1.4E-05 34.4 2.2 49 315-373 4-57 (60)
243 2c2l_A CHIP, carboxy terminus 85.1 0.2 6.9E-06 47.9 0.5 50 360-420 205-256 (281)
244 2d8s_A Cellular modulator of i 83.8 0.39 1.3E-05 36.8 1.5 59 357-420 9-71 (80)
245 2bay_A PRE-mRNA splicing facto 77.0 1 3.5E-05 32.4 1.7 51 318-380 4-55 (61)
246 3k1l_B Fancl; UBC, ring, RWD, 74.5 0.86 2.9E-05 44.7 1.0 59 315-374 306-372 (381)
247 2yu4_A E3 SUMO-protein ligase 73.0 0.43 1.5E-05 37.7 -1.4 48 361-419 5-63 (94)
248 2cs3_A Protein C14ORF4, MY039 70.0 2.5 8.5E-05 31.8 2.3 54 314-368 12-69 (93)
249 2f42_A STIP1 homology and U-bo 69.7 0.65 2.2E-05 41.4 -1.1 49 361-420 104-154 (179)
250 2ko5_A Ring finger protein Z; 68.8 3.1 0.00011 32.4 2.7 54 313-379 24-77 (99)
251 2ko5_A Ring finger protein Z; 64.5 2.6 8.8E-05 32.8 1.5 56 362-428 27-82 (99)
252 3htk_C E3 SUMO-protein ligase 62.9 1.7 5.9E-05 40.9 0.4 47 363-420 181-233 (267)
253 1p1p_A AA-conotoxin PIVA; neur 60.8 6 0.0002 22.2 2.1 18 435-452 3-20 (26)
254 1wim_A KIAA0161 protein; ring 49.5 3.5 0.00012 32.1 0.0 47 363-420 5-67 (94)
255 1weo_A Cellulose synthase, cat 49.1 20 0.00068 27.6 4.1 55 315-380 14-75 (93)
256 2d8v_A Zinc finger FYVE domain 48.7 8.4 0.00029 27.8 1.9 35 313-348 4-39 (67)
257 4g26_A Pentatricopeptide repea 45.9 69 0.0024 33.0 9.3 13 18-30 37-49 (501)
258 3zrh_A Ubiquitin thioesterase 35.2 80 0.0027 31.5 7.0 63 16-99 28-90 (454)
259 1gp8_A Protein (scaffolding pr 35.1 27 0.00091 22.3 2.4 20 12-31 15-34 (40)
260 3mkq_B Coatomer subunit alpha; 32.0 1.1E+02 0.0038 26.7 6.9 110 10-134 8-140 (177)
261 3mkq_B Coatomer subunit alpha; 30.6 1.6E+02 0.0054 25.7 7.6 74 46-132 9-83 (177)
262 3t7l_A Zinc finger FYVE domain 30.3 29 0.001 26.7 2.6 38 309-346 12-53 (90)
263 2lri_C Autoimmune regulator; Z 28.3 1.3E+02 0.0044 21.5 5.6 50 315-372 10-59 (66)
264 1ee8_A MUTM (FPG) protein; bet 27.2 20 0.00068 33.8 1.2 33 404-438 232-264 (266)
265 2jne_A Hypothetical protein YF 27.0 11 0.00038 29.4 -0.4 41 364-419 33-73 (101)
266 2xzf_A Formamidopyrimidine-DNA 26.5 20 0.00067 34.0 1.1 32 404-437 239-270 (271)
267 2l5u_A Chromodomain-helicase-D 26.3 1.4E+02 0.0046 20.9 5.3 52 313-372 7-58 (61)
268 1k82_A Formamidopyrimidine-DNA 25.8 21 0.0007 33.8 1.1 32 404-437 237-268 (268)
269 3o36_A Transcription intermedi 25.2 58 0.002 28.5 3.9 49 316-372 3-51 (184)
270 3vhs_A ATPase wrnip1; zinc fin 24.8 14 0.00048 21.2 -0.2 13 360-372 3-15 (29)
271 1fp0_A KAP-1 corepressor; PHD 23.9 1E+02 0.0034 23.7 4.5 51 313-371 21-71 (88)
272 1jlp_A PSI-conotoxin PIIIF; mu 23.8 24 0.00083 19.6 0.7 7 434-440 9-15 (26)
273 3u6p_A Formamidopyrimidine-DNA 23.4 24 0.00083 33.4 1.1 30 406-437 244-273 (273)
274 3u5n_A E3 ubiquitin-protein li 23.3 64 0.0022 28.9 3.9 50 315-372 5-54 (207)
275 1z2q_A LM5-1; membrane protein 23.0 40 0.0014 25.5 2.1 32 313-344 17-52 (84)
276 3nw0_A Non-structural maintena 23.0 56 0.0019 30.1 3.5 48 316-373 179-227 (238)
277 1pqr_A Alpha-A-conotoxin EIVA; 22.0 58 0.002 18.9 2.0 18 435-452 3-21 (31)
278 2yw8_A RUN and FYVE domain-con 21.1 34 0.0012 25.8 1.3 33 313-345 15-51 (82)
279 1joc_A EEA1, early endosomal a 20.5 44 0.0015 27.4 2.0 34 313-346 65-102 (125)
280 1k3x_A Endonuclease VIII; hydr 20.1 31 0.0011 32.4 1.1 30 406-437 233-262 (262)
No 1
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=4.2e-40 Score=320.04 Aligned_cols=226 Identities=26% Similarity=0.225 Sum_probs=179.5
Q ss_pred CCCcHHHHHHHHcC-------------CHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 010335 8 SASGERLVSAARDG-------------DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR 74 (513)
Q Consensus 8 s~~~~~L~~Aa~~G-------------~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~ 74 (513)
..+.++||.|+..| +.+++++|++.|+++.... +..|.||||+|+..|+.++|++|+++|++++.+
T Consensus 8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~ 86 (253)
T 1yyh_A 8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADANIQ 86 (253)
T ss_dssp --------------------------------------------CC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 45678999999987 9999999999999886542 233499999999999999999999999999999
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCC
Q 010335 75 NYCGQTALMQACRYGHWEVVQTLLLFRC-NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRG 153 (513)
Q Consensus 75 d~~g~TpLh~A~~~g~~eiVk~LL~~ga-~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~ 153 (513)
|..|.||||+|+..|+.+++++|+++++ +++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 87 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------- 149 (253)
T 1yyh_A 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHAD---------------- 149 (253)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT-TCCCHHHHHHHHTCSSHHHHHHHTTCC----------------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC-CCCcHHHHHHHcChHHHHHHHHHcCCC----------------
Confidence 9999999999999999999999999988 7777764 899999999999999999999987654
Q ss_pred CCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCC
Q 010335 154 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 233 (513)
Q Consensus 154 ~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~ 233 (513)
++..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+
T Consensus 150 -----------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~tpL~~A~~~~~ 202 (253)
T 1yyh_A 150 -----------------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR----------EETPLFLAAREGS 202 (253)
T ss_dssp -----------------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTC
T ss_pred -----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHCCC
Confidence 6677888999999999999999999999999999999876 9999999999999
Q ss_pred HHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335 234 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278 (513)
Q Consensus 234 ~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~ 278 (513)
.+++++|+++|++++.+|..|+|||++|++.|+.+|+++|.....
T Consensus 203 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred HHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999976543
No 2
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.1e-39 Score=309.50 Aligned_cols=222 Identities=28% Similarity=0.320 Sum_probs=205.0
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g 89 (513)
+.++|+.|++.|+++.+++|++.++..... .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSLATR-TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGGGGC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhhhhc-CCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 467899999999999999999988765333 2334599999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335 90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK 169 (513)
Q Consensus 90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 85 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------------------------------- 131 (231)
T 3aji_A 85 XDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGAN-------------------------------- 131 (231)
T ss_dssp CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC--------------------------------
T ss_pred HHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC--------------------------------
Confidence 99999999999999998885 899999999999999999999987653
Q ss_pred hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335 170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 249 (513)
Q Consensus 170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~ 249 (513)
++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.
T Consensus 132 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 200 (231)
T 3aji_A 132 -PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE----------GNTPLHLACDEERVEEAKFLVTQGASIYI 200 (231)
T ss_dssp -TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred -CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCC----------CCCHHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence 5567788999999999999999999999999999999876 99999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335 250 LNCNGWLPLDVARMWGRHWLEPLLAPS 276 (513)
Q Consensus 250 ~d~~G~TpL~~A~~~g~~~iv~lL~~~ 276 (513)
+|..|+|||++|+..++.+++++|.+.
T Consensus 201 ~~~~g~t~l~~A~~~~~~~i~~lL~~~ 227 (231)
T 3aji_A 201 ENKEEKTPLQVAKGGLGLILKRLAEGE 227 (231)
T ss_dssp CCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence 999999999999999999999998754
No 3
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.1e-39 Score=311.02 Aligned_cols=224 Identities=28% Similarity=0.315 Sum_probs=201.8
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHh----cCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLD----CNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALM 83 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~----~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh 83 (513)
..+.++||.|++.|+++++++|++ .+.+++..... |.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~ 84 (241)
T 1k1a_A 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL--RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH 84 (241)
T ss_dssp CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccccc--CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence 456789999999999999999997 67777655444 499999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCC----CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhh
Q 010335 84 QACRYGHWEVVQTLLLFRC----NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVK 159 (513)
Q Consensus 84 ~A~~~g~~eiVk~LL~~ga----~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (513)
+|+..|+.+++++|+++++ +++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------- 141 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTECQETVQLLLERGAD---------------------- 141 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCC----------------------
T ss_pred HHHHcCCHHHHHHHHHcCCCccccccccCc-CCCcHHHHHHHcCCHHHHHHHHHcCCC----------------------
Confidence 9999999999999999988 7777664 899999999999999999999987654
Q ss_pred hhhchhHHHHhccccc-CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHH
Q 010335 160 SKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 238 (513)
Q Consensus 160 ~~~~~~~~~~~i~~~d-~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk 238 (513)
++..+ ..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.++++
T Consensus 142 -----------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~ 200 (241)
T 1k1a_A 142 -----------IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS----------GSSALHSASGRGLLPLVR 200 (241)
T ss_dssp -----------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTT----------SCBHHHHHHHHTCHHHHH
T ss_pred -----------cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCCHHHHH
Confidence 44455 67999999999999999999999999999999876 999999999999999999
Q ss_pred HHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC
Q 010335 239 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS 277 (513)
Q Consensus 239 ~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~ 277 (513)
+|+++|++++.+|..|+||||+|+..|+.++++.|.+.+
T Consensus 201 ~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~ 239 (241)
T 1k1a_A 201 TLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239 (241)
T ss_dssp HHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred HHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence 999999999999999999999999999999999987754
No 4
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.8e-39 Score=315.86 Aligned_cols=218 Identities=27% Similarity=0.303 Sum_probs=198.6
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g 89 (513)
+.++||.|++.|+.+++++|+++|.+++..+.. |.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD--HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 568999999999999999999999988765554 499999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335 90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK 169 (513)
Q Consensus 90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
+.++|++|+++|++++... .|.||||+|+..|+.+++++|++.+..
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------------- 126 (261)
T 2xai_A 81 SWDCVNLLLQHGASVQPES--DLASPIHEAARRGHVECVNSLIAYGGN-------------------------------- 126 (261)
T ss_dssp CHHHHHHHHHTTCCSSCSC--TTCCHHHHHHHTTCHHHHHHHHHTTCC--------------------------------
T ss_pred CHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHHcCCC--------------------------------
Confidence 9999999999999998654 699999999999999999999987653
Q ss_pred hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335 170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 249 (513)
Q Consensus 170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~ 249 (513)
++..+..|.||||+|+..|+.+++++|+++|++++. +.. |.||||+|+..|+.+++++|+++|+|++.
T Consensus 127 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~----------g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~ 194 (261)
T 2xai_A 127 -IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKG----------QDSPLHAVARTASEELACLLMDFGADTQA 194 (261)
T ss_dssp -TTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBT----------TBCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred -CCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCC----------CCChHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 667788999999999999999999999999999985 443 99999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHcCccchhhhcCCCC
Q 010335 250 LNCNGWLPLDVARMWGRHWLEPLLAPSS 277 (513)
Q Consensus 250 ~d~~G~TpL~~A~~~g~~~iv~lL~~~~ 277 (513)
+|.+|+||||+|+..+ .++++|.+..
T Consensus 195 ~d~~g~tpl~~A~~~~--~~~~~ll~~~ 220 (261)
T 2xai_A 195 KNAEGKRPVELVPPES--PLAQLFLERE 220 (261)
T ss_dssp CCTTSCCGGGGSCTTC--THHHHHHHC-
T ss_pred cCCCCCChhhhccccc--cHHHHHHhcc
Confidence 9999999999999554 4777776653
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.4e-38 Score=309.23 Aligned_cols=231 Identities=26% Similarity=0.266 Sum_probs=192.9
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g 89 (513)
+.++|+.|++.|+++++++|++.|++++.... ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE-EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcccccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 46789999999999999999999998876533 33489999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335 90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK 169 (513)
Q Consensus 90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+......... ..
T Consensus 84 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-----------------------~~ 139 (285)
T 1wdy_A 84 SVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT-----------------------KE 139 (285)
T ss_dssp CHHHHHHHHHTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC-----------------------CH
T ss_pred CHHHHHHHHHcCCCCCccCc-ccCCHHHHHHHhCCHHHHHHHHHhCCCccccccc-----------------------HH
Confidence 99999999999999998885 8999999999999999999999887653221110 00
Q ss_pred hcccccCCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCccccccCCCCchhHHHhhCCC----HHHHHHHHHCC
Q 010335 170 FVNKAADGGITALHMAALNGYFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN----LKCCQVLLSRG 244 (513)
Q Consensus 170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~-Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~----~eivk~LL~~G 244 (513)
.....+..|.||||+|+..|+.+++++|++. |++++..+.. |.||||+|+..++ .+++++|+++|
T Consensus 140 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~----------g~t~l~~a~~~~~~~~~~~i~~~Ll~~g 209 (285)
T 1wdy_A 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM----------GRNALIHALLSSDDSDVEAITHLLLDHG 209 (285)
T ss_dssp HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTT----------SCCHHHHHHHCSCTTTHHHHHHHHHHTT
T ss_pred HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCC----------CCCHHHHHHHccccchHHHHHHHHHHcC
Confidence 1233456777888888888888888888876 8888777765 7888888888887 78888888888
Q ss_pred CCCCCcCCCCCcHHHHHHHcCccchhhhcCC
Q 010335 245 ASRMSLNCNGWLPLDVARMWGRHWLEPLLAP 275 (513)
Q Consensus 245 ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~ 275 (513)
++++.+|..|+||||+|+..|+.+++++|.+
T Consensus 210 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 8888888888888888888888888777765
No 6
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.7e-39 Score=318.70 Aligned_cols=225 Identities=26% Similarity=0.316 Sum_probs=202.3
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
..+.++||.|+..|+.+++++|++.|.+++..+..+ .||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.
T Consensus 57 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~ 134 (285)
T 3d9h_A 57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH--VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV 134 (285)
T ss_dssp CCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC--CCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC--CCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 446689999999999999999999999887655544 899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335 88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (513)
.|+.++|++|+++|++++..+ .|.||||+|+..|+.+++++|++.+..
T Consensus 135 ~~~~~~v~~Ll~~g~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------------------------ 182 (285)
T 3d9h_A 135 SGSWDCVNLLLQHGASVQPES--DLASPIHEAARRGHVECVNSLIAYGGN------------------------------ 182 (285)
T ss_dssp HTCHHHHHHHHHTTCCSSCSC--TTSCHHHHHHHHTCHHHHHHHHHTTCC------------------------------
T ss_pred cCHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCC------------------------------
Confidence 999999999999999988655 599999999999999999999987653
Q ss_pred HHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCC
Q 010335 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 247 (513)
Q Consensus 168 ~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~ 247 (513)
++..|..|.||||+|+..|+.++|++|+++|++++. +.. |.||||+|+..|+.+++++|+++|+++
T Consensus 183 ---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~----------g~t~L~~A~~~~~~~~v~~Ll~~gad~ 248 (285)
T 3d9h_A 183 ---IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKG----------QDSPLHAVVRTASEELACLLMDFGADT 248 (285)
T ss_dssp ---TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBT----------TBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred ---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 567788999999999999999999999999999985 544 999999999999999999999999999
Q ss_pred CCcCCCCCcHHHHHHHcCccchhhhcCCCCCCCCC
Q 010335 248 MSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMP 282 (513)
Q Consensus 248 ~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~~~~ 282 (513)
+.+|.+|+||||+|+ ++.+++++|++.....++
T Consensus 249 ~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 249 QAKNAEGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp TCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred CCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 999999999999999 456888888876544443
No 7
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.4e-38 Score=305.10 Aligned_cols=217 Identities=30% Similarity=0.417 Sum_probs=201.1
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
..+.++||.|++.|+.+++++|+++|.+++.....+ .||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 9 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 86 (237)
T 3b7b_A 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ--RTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAK 86 (237)
T ss_dssp CCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCC--CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Confidence 456789999999999999999999999887655544 899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcC-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335 88 YGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166 (513)
Q Consensus 88 ~g~~eiVk~LL~~g-a~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (513)
.|+.+++++|+++| .+++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 87 ~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------------------------- 136 (237)
T 3b7b_A 87 KGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSKGSD----------------------------- 136 (237)
T ss_dssp TTCHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-----------------------------
T ss_pred cCCHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-----------------------------
Confidence 99999999999998 77877775 899999999999999999999987653
Q ss_pred HHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246 (513)
Q Consensus 167 ~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad 246 (513)
++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++
T Consensus 137 ----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~gad 202 (237)
T 3b7b_A 137 ----INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH----------GDSPLHIAARENRYDCVVLFLSRDSD 202 (237)
T ss_dssp ----TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred ----CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHhCCHhHHHHHHHcCCC
Confidence 5667788999999999999999999999999999999876 99999999999999999999999999
Q ss_pred CCCcCCCCCcHHHHHHHcCccchh
Q 010335 247 RMSLNCNGWLPLDVARMWGRHWLE 270 (513)
Q Consensus 247 ~~~~d~~G~TpL~~A~~~g~~~iv 270 (513)
++.+|.+|+||||+|+..++.+.+
T Consensus 203 ~~~~d~~g~t~l~~A~~~~~~~~~ 226 (237)
T 3b7b_A 203 VTLKNKEGETPLQCASLNSQVWSA 226 (237)
T ss_dssp TTCCCTTSCCHHHHSCTTCHHHHH
T ss_pred CCccCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987543
No 8
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=318.97 Aligned_cols=219 Identities=25% Similarity=0.260 Sum_probs=173.1
Q ss_pred cHHHHHHHHcCCHHHHHHHHhcCCCCcc------ccCCCCCCcHHHHHHHcCCH-HHHHHHHHCCCCCCCCCCCCChHHH
Q 010335 11 GERLVSAARDGDFVEAKMLLDCNPCLAK------YSTFGGLNSPLHFAAAKGHN-EIVALLLENGADVNSRNYCGQTALM 83 (513)
Q Consensus 11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~------~~~~~~g~TpLh~Aa~~g~~-eivk~LL~~Gadvn~~d~~g~TpLh 83 (513)
.++|+.|++.|++++|++||+.+..... ...+..+.||||+|+..++. .++++|++.|+++|.+|.+|.||||
T Consensus 12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh 91 (269)
T 4b93_B 12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLH 91 (269)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHH
T ss_pred hhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence 4789999999999999999998865421 12233458999999998876 5889999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhc
Q 010335 84 QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163 (513)
Q Consensus 84 ~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (513)
+|+..|+.++|++|++.|++++..+. .|.||+|+|+..++.+++++|++.+..
T Consensus 92 ~A~~~g~~~~v~~Ll~~~a~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~-------------------------- 144 (269)
T 4b93_B 92 VAALHGRADLIPLLLKHGANAGARNA-DQAVPLHLACQQGHFQVVKCLLDSNAK-------------------------- 144 (269)
T ss_dssp HHHHTTCTTHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC--------------------------
T ss_pred HHHHcCcHHHHHHHHhcCCCcCccCC-CCCCccccccccChHHHHHHHHHCCCC--------------------------
Confidence 99999999999999999999998886 899999999999999999999987654
Q ss_pred hhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243 (513)
Q Consensus 164 ~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~ 243 (513)
++.+|..|+||||+|+..|+.++|++|+++|+++|..+.. |.||||+|+..|+.++|++|+++
T Consensus 145 -------~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~----------g~t~Lh~A~~~g~~~~v~~Ll~~ 207 (269)
T 4b93_B 145 -------PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK----------GNTALHEAVIEKHVFVVELLLLH 207 (269)
T ss_dssp -------SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTT----------SCBHHHHHHHTTCHHHHHHHHHT
T ss_pred -------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccC----------CCcHHHHHHHcCCHHHHHHHHHC
Confidence 6778889999999999999999999999999999999976 99999999999999999999999
Q ss_pred CCCCCCcCCCCCcHHHHHHHcCc-cchhhhc
Q 010335 244 GASRMSLNCNGWLPLDVARMWGR-HWLEPLL 273 (513)
Q Consensus 244 Gad~~~~d~~G~TpL~~A~~~g~-~~iv~lL 273 (513)
|+|++.+|.+|+||||+|+++++ .++.++|
T Consensus 208 Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l 238 (269)
T 4b93_B 208 GASVQVLNKRQRTAVDCAEQNSKIMELLQVV 238 (269)
T ss_dssp TCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-
T ss_pred CCCCCCcCCCCCCHHHHHHhCCcHHHHHHHH
Confidence 99999999999999999988776 2344433
No 9
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.6e-38 Score=311.94 Aligned_cols=214 Identities=25% Similarity=0.207 Sum_probs=148.9
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCc-cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLA-KYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQAC 86 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~-~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~ 86 (513)
..+.++||.|++.|+.++|++|++.+.+.. ....+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~ 86 (282)
T 1oy3_D 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC 86 (282)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHT
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 456789999999999999999999988732 1123334599999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCC-----------------------------------------------CcccCCCCCcHHHHH
Q 010335 87 RYGHWEVVQTLLLFRCNV-----------------------------------------------TRADYLSGRTALHFA 119 (513)
Q Consensus 87 ~~g~~eiVk~LL~~ga~~-----------------------------------------------~~~~~~~G~TpLh~A 119 (513)
..|+.+++++|+++|++. +..+ ..|.||||+|
T Consensus 87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A 165 (282)
T 1oy3_D 87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN-YDGHTPLHVA 165 (282)
T ss_dssp TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCC-TTSCCHHHHH
T ss_pred HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcC-CCCcCHHHHH
Confidence 999999999999988763 2233 2566666666
Q ss_pred HHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccC-CCCcHHHHHHHcCCHHHHHHHH
Q 010335 120 AVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD-GGITALHMAALNGYFDCVQLLL 198 (513)
Q Consensus 120 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~G~TpLh~Aa~~g~~eiv~~Ll 198 (513)
+..|+.+++++|++.+.. ++..+. .|+||||+|+..|+.++|++|+
T Consensus 166 ~~~g~~~~v~~Ll~~g~~---------------------------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 212 (282)
T 1oy3_D 166 VIHKDAEMVRLLRDAGAD---------------------------------LNKPEPTCGRTPLHLAVEAQAASVLELLL 212 (282)
T ss_dssp HHTTCHHHHHHHHHHTCC---------------------------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCC---------------------------------CCCCCCCCCcCHHHHHHHcCCHHHHHHHH
Confidence 666666666666655432 333332 3666666666666666666666
Q ss_pred HcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Q 010335 199 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265 (513)
Q Consensus 199 ~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g 265 (513)
++|++++.++.. |.||||+|+..|+.+++++|+++|++++.+|.+|+|||++|....
T Consensus 213 ~~gad~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 213 KAGADPTARMYG----------GRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HTTCCTTCCCTT----------SCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred HcCCCCcccccC----------CCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 666666666654 666666666666666666666666666666666666666665543
No 10
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-37 Score=305.02 Aligned_cols=226 Identities=27% Similarity=0.279 Sum_probs=207.4
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
..+.++||.|++.|+.+++++|+++|.+++.....+ .||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 37 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 114 (285)
T 1wdy_A 37 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG--ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHH
Confidence 345689999999999999999999999887655444 899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCccc---------CCCCCcHHHHHHHcCCHHHHHHHHHc-cCCCCccccchhhhcccCCCCch
Q 010335 88 YGHWEVVQTLLLFRCNVTRAD---------YLSGRTALHFAAVNGHVRCIRLVVAD-FVPSVPFEVMNTQIEGDRGDGSS 157 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~---------~~~G~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~ 157 (513)
.|+.+++++|+++|++++... +..|.||||+|+..|+.+++++|++. +..
T Consensus 115 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-------------------- 174 (285)
T 1wdy_A 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-------------------- 174 (285)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC--------------------
T ss_pred hCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC--------------------
Confidence 999999999999999998762 24799999999999999999999976 332
Q ss_pred hhhhhchhHHHHhcccccCCCCcHHHHHHHcCC----HHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCC
Q 010335 158 VKSKCDQSALSKFVNKAADGGITALHMAALNGY----FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 233 (513)
Q Consensus 158 ~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~----~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~ 233 (513)
++..+..|.||||+|+..++ .+++++|+++|++++..+.. |.||||+|+..|+
T Consensus 175 -------------~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 175 -------------VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER----------GKTPLILAVEKKH 231 (285)
T ss_dssp -------------TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT----------SCCHHHHHHHTTC
T ss_pred -------------CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCC----------CCcHHHHHHHcCC
Confidence 56778889999999999999 99999999999999999876 9999999999999
Q ss_pred HHHHHHHHH-CCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335 234 LKCCQVLLS-RGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278 (513)
Q Consensus 234 ~eivk~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~ 278 (513)
.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|.+.+.
T Consensus 232 ~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga 277 (285)
T 1wdy_A 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277 (285)
T ss_dssp HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred HHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence 999999999 899999999999999999999999999998876543
No 11
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.1e-37 Score=315.23 Aligned_cols=269 Identities=28% Similarity=0.268 Sum_probs=212.7
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhc-CCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335 10 SGERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY 88 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~-~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~ 88 (513)
+.++|+.|++.|+++.+++|+.. +.+++..+. .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..
T Consensus 24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 101 (351)
T 3utm_A 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDG--RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY 101 (351)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSST--TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred cchhHHHHHHcCCHHHHHHHHHhcCCCcccCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC
Confidence 35789999999999999999976 555544433 459999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccc---hhhhcccCCCCchh-------
Q 010335 89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM---NTQIEGDRGDGSSV------- 158 (513)
Q Consensus 89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~---~~~~~~~~~~~~~~------- 158 (513)
|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+......... ..............
T Consensus 102 g~~~iv~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~ 180 (351)
T 3utm_A 102 GHYEVTELLLKHGACVNAMDL-WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180 (351)
T ss_dssp TCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhccc
Confidence 999999999999999998885 8999999999999999999999987654322111 00000000000000
Q ss_pred -----hhhhchhHHHHh------cccccCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcccccccCCccccccCCCCch
Q 010335 159 -----KSKCDQSALSKF------VNKAADGGITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224 (513)
Q Consensus 159 -----~~~~~~~~~~~~------i~~~d~~G~TpLh~Aa~~---g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~Tp 224 (513)
........+... ....+..|.||||+|+.. +..+++++|+++|++++..+.. |.||
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~ 250 (351)
T 3utm_A 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD----------FMTP 250 (351)
T ss_dssp HHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTT----------CCCH
T ss_pred HHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCC----------CCCH
Confidence 000000011111 123456799999999999 5589999999999999999876 9999
Q ss_pred hHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC-CCCCCCCCCCCccccchh
Q 010335 225 LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS-DAVMPRFHPSNYLSLPLL 295 (513)
Q Consensus 225 Lh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~-~~~~~~~~~~~~~~~~l~ 295 (513)
||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++.+ +.... +..+.+|+.
T Consensus 251 L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~----~~~g~tal~ 318 (351)
T 3utm_A 251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII----SLQGFTAAQ 318 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc----CCCCCChhh
Confidence 99999999999999999999999999999999999999999999998887754 33443 444555544
No 12
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.1e-38 Score=323.03 Aligned_cols=222 Identities=19% Similarity=0.176 Sum_probs=203.2
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g 89 (513)
+.++||.|++.|++++|++||+.|.+++..+..+ .||||+|+..|+.++|++|+++|++++. ..|.||||+|+..|
T Consensus 20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g 95 (364)
T 3ljn_A 20 NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFG--CTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMAN 95 (364)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC--CcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcC
Confidence 4689999999999999999999999887655544 8999999999999999999999996654 57999999999999
Q ss_pred CHHHHHHHHhc----CCCCCc-----------------ccCCCCCcHHHHHHHcC--CHHHHHHHHHccCCCCccccchh
Q 010335 90 HWEVVQTLLLF----RCNVTR-----------------ADYLSGRTALHFAAVNG--HVRCIRLVVADFVPSVPFEVMNT 146 (513)
Q Consensus 90 ~~eiVk~LL~~----ga~~~~-----------------~~~~~G~TpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~ 146 (513)
+.++|++|+++ |++++. .+. .|.||||+|+..| +.+++++|++.+..
T Consensus 96 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~--------- 165 (364)
T 3ljn_A 96 KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLGAS--------- 165 (364)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGHHHHHHHHHHTCC---------
T ss_pred CHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCC-CCCCHHHHHHHcCCchHHHHHHHHHcCCC---------
Confidence 99999999999 887766 554 8999999999999 99999999987654
Q ss_pred hhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----cccccccCCccccccCCC
Q 010335 147 QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN-----VSAVTFHYGTSMDLIGAG 221 (513)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad-----vn~~~~~~~~~~~~~~~G 221 (513)
++..|..|.||||+|+..|+.++|++|+++|++ ++..+.. |
T Consensus 166 ------------------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~----------g 211 (364)
T 3ljn_A 166 ------------------------PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ----------G 211 (364)
T ss_dssp ------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT----------C
T ss_pred ------------------------CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC----------C
Confidence 667788999999999999999999999999999 8888866 9
Q ss_pred CchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCC
Q 010335 222 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA 279 (513)
Q Consensus 222 ~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~ 279 (513)
.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++.++.
T Consensus 212 ~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 269 (364)
T 3ljn_A 212 NSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV 269 (364)
T ss_dssp CCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCc
Confidence 9999999999999999999999999999999999999999999999999999886543
No 13
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-37 Score=324.55 Aligned_cols=276 Identities=27% Similarity=0.282 Sum_probs=224.7
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
..+.++||.|++.|+.+++++|++++.+....... |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 111 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 188 (437)
T 1n11_A 111 TAGHTPLHIAAREGHVETVLALLEKEASQACMTKK--GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH 188 (437)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCC--CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence 44678999999999999999999999887655444 4899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCcc---ccchhhhcccCCCCchhhhhhch
Q 010335 88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF---EVMNTQIEGDRGDGSSVKSKCDQ 164 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 164 (513)
.|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+...... .......+...+....+.....
T Consensus 189 ~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~- 266 (437)
T 1n11_A 189 HNNLDIVKLLLPRGGSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS- 266 (437)
T ss_dssp TTCHHHHHHHGGGTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-
T ss_pred cCCHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh-
Confidence 9999999999999999988775 8999999999999999999999887643321 1112222222222221111111
Q ss_pred hHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244 (513)
Q Consensus 165 ~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G 244 (513)
....++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.++|++|+++|
T Consensus 267 --~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~g~~~~v~~Ll~~g 334 (437)
T 1n11_A 267 --KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM----------GYTPLHVASHYGNIKLVKFLLQHQ 334 (437)
T ss_dssp --TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSS----------CCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred --cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCC----------CCCHHHHHHHcCcHHHHHHHHhcC
Confidence 11224667888999999999999999999999999999998876 999999999999999999999999
Q ss_pred CCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCC-CCCCCCCCCccccchhHHHHHHHHhCCC
Q 010335 245 ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA-VMPRFHPSNYLSLPLLSVLNVARECGLL 307 (513)
Q Consensus 245 ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~-~~~~~~~~~~~~~~l~~~l~~a~e~g~~ 307 (513)
++++.+|..|+||||+|+..|+.+++++|++.+.. +.. +..+.+| +++|.+.|+.
T Consensus 335 ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~----~~~g~t~----l~~A~~~g~~ 390 (437)
T 1n11_A 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV----SSDGTTP----LAIAKRLGYI 390 (437)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC----CSSSCCH----HHHHHHTTCH
T ss_pred CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCC----CCCCCCH----HHHHHHcCcH
Confidence 99999999999999999999999999888775433 322 5556666 5566666653
No 14
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=5e-38 Score=298.37 Aligned_cols=217 Identities=26% Similarity=0.233 Sum_probs=196.5
Q ss_pred CCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhc
Q 010335 21 GDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF 100 (513)
Q Consensus 21 G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ 100 (513)
|+.+++++|++.|++++.... ..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTD-RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ---CCEETTEETTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CcHHHHHHHHHcCCCcccccC-CCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 788999999999998876532 3349999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCC
Q 010335 101 RC-NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGI 179 (513)
Q Consensus 101 ga-~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~ 179 (513)
++ +++..+. .|.||||+|+..|+.+++++|++.+.. ++..+..|.
T Consensus 81 ~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~ 126 (223)
T 2f8y_A 81 RATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHAD---------------------------------VNAVDDLGK 126 (223)
T ss_dssp TTSCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCBCTTSC
T ss_pred CCCCcccCCC-CCCcHHHHHHHhCcHHHHHHHHHcCCC---------------------------------CcCcCCCCC
Confidence 88 6666664 899999999999999999999987653 566788899
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Q 010335 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 259 (513)
Q Consensus 180 TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~ 259 (513)
||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.|||+
T Consensus 127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~ 196 (223)
T 2f8y_A 127 SALHWAAAVNNVDAAVVLLKNGANKDMQNNR----------EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 196 (223)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHH
Confidence 9999999999999999999999999999876 999999999999999999999999999999999999999
Q ss_pred HHHHcCccchhhhcCCCCCCCCC
Q 010335 260 VARMWGRHWLEPLLAPSSDAVMP 282 (513)
Q Consensus 260 ~A~~~g~~~iv~lL~~~~~~~~~ 282 (513)
+|+..++.+++++|.+.+....+
T Consensus 197 ~A~~~~~~~i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 197 IAQERMHHDIVRLLDEYNLVRSP 219 (223)
T ss_dssp HHHHTTCHHHHHHHHHTTCSSCC
T ss_pred HHHHhcchHHHHHHHHcCCCccc
Confidence 99999999999999887765433
No 15
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2e-37 Score=324.62 Aligned_cols=254 Identities=28% Similarity=0.334 Sum_probs=202.8
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
..+.++||.|++.|++++|++|+++|.+++.....+ .||||+|+..|+.++|++|+++|+++|.+|..|.||||+|+.
T Consensus 12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 12 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKV--ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCC--CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence 345689999999999999999999998887654444 899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCcc---ccchhhhcccCCCCchhhhhhch
Q 010335 88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF---EVMNTQIEGDRGDGSSVKSKCDQ 164 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 164 (513)
.|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+...... .......+...+....+.....
T Consensus 90 ~g~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~- 167 (437)
T 1n11_A 90 IGHTNMVKLLLENNANPNLATT-AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE- 167 (437)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred CCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHh-
Confidence 9999999999999999998885 8999999999999999999999887643221 1112222222222111111110
Q ss_pred hHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244 (513)
Q Consensus 165 ~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G 244 (513)
....++..+..|.||||+|+..|+.++|++|+++|++++..+.. |.||||+|+..|+.+++++|+++|
T Consensus 168 --~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 168 --RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN----------GYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp --TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred --CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcC
Confidence 11234666778888999999888888999888888888877755 888888888888888888888888
Q ss_pred CCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC
Q 010335 245 ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS 277 (513)
Q Consensus 245 ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~ 277 (513)
++++..+..|.||||+|+..|+.+++++|.+..
T Consensus 236 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 268 (437)
T 1n11_A 236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268 (437)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC
Confidence 888888888888888888888888887776543
No 16
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=307.40 Aligned_cols=240 Identities=24% Similarity=0.202 Sum_probs=185.4
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCC---------ccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCL---------AKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCG 78 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~---------~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g 78 (513)
+.+.++||.|+..|+.+.+..++..++.. .....+..|.||||+|+..|+.++|++|++.|++++.+|..|
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g 92 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH 92 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence 45668899999999998888877664331 122334456999999999999999999999999999999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchh
Q 010335 79 QTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSV 158 (513)
Q Consensus 79 ~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (513)
.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 93 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------------------- 150 (285)
T 3d9h_A 93 VSPLHEACLGGHLSCVKILLKHGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQHGAS--------------------- 150 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC---------------------
T ss_pred CCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCHHHHHHHHHHCCCC---------------------
Confidence 9999999999999999999999999998885 899999999999999999999987653
Q ss_pred hhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHH
Q 010335 159 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 238 (513)
Q Consensus 159 ~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk 238 (513)
++. +..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.++|+
T Consensus 151 ------------~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~----------g~t~L~~A~~~~~~~~v~ 207 (285)
T 3d9h_A 151 ------------VQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISH----------LGTPLYLACENQQRACVK 207 (285)
T ss_dssp ------------SSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTT----------TBCHHHHHHHTTCHHHHH
T ss_pred ------------CCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC----------CCCHHHHHHHcCcHHHHH
Confidence 121 234899999999999999999999999999999876 999999999999999999
Q ss_pred HHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC-CCCCCCCCCCccccchhHH
Q 010335 239 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD-AVMPRFHPSNYLSLPLLSV 297 (513)
Q Consensus 239 ~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~-~~~~~~~~~~~~~~~l~~~ 297 (513)
+|+++|++++. |..|+||||+|+..++.+++++|++.+. .+.. +..+.+|+..+
T Consensus 208 ~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~----d~~g~t~l~~A 262 (285)
T 3d9h_A 208 KLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAK----NAEGKRPVELV 262 (285)
T ss_dssp HHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCGGGGS
T ss_pred HHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc----CCCCCCHHHHh
Confidence 99999999995 8999999999999999999988876543 3333 55666776543
No 17
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.1e-37 Score=296.78 Aligned_cols=217 Identities=24% Similarity=0.269 Sum_probs=194.9
Q ss_pred cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCC--CCCCC-CCCCCChHHHHHHH
Q 010335 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENG--ADVNS-RNYCGQTALMQACR 87 (513)
Q Consensus 11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~G--advn~-~d~~g~TpLh~A~~ 87 (513)
.++||.|++.|+.+++++|++.+++..... +..|.||||+|+..|+.+++++|+++| ++++. .|..|.||||+|+.
T Consensus 3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 3 NYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred ccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 468999999999999999999998775532 333499999999999999999999999 66666 78999999999999
Q ss_pred cCCHHHHHHHHhcC--CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchh
Q 010335 88 YGHWEVVQTLLLFR--CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165 (513)
Q Consensus 88 ~g~~eiVk~LL~~g--a~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (513)
.|+.+++++|+++| ++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------- 132 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIENGAS---------------------------- 132 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC----------------------------
T ss_pred cCCHHHHHHHHhCCCCcccccCCc-CCCCHHHHHHHcCCHhHHHHHHHcCCC----------------------------
Confidence 99999999999998 88887775 899999999999999999999987654
Q ss_pred HHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHH-HC
Q 010335 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL-SR 243 (513)
Q Consensus 166 ~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL-~~ 243 (513)
++..+..|.||||+|+..|+.+++++|+++| ++++..+.. |.||||+|+..|+.+++++|+ ++
T Consensus 133 -----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~~ 197 (228)
T 2dzn_A 133 -----VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ----------GWTPLFHALAEGHGDAAVLLVEKY 197 (228)
T ss_dssp -----SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCC----------CCCHHHHHHHcCCHHHHHHHHHhc
Confidence 5677888999999999999999999999999 999999876 999999999999999999999 89
Q ss_pred CCCCCCcCCCCCcHHHHHHHcCccchhhhcCC
Q 010335 244 GASRMSLNCNGWLPLDVARMWGRHWLEPLLAP 275 (513)
Q Consensus 244 Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~ 275 (513)
|++++.+|.+|+|||++|... +++++|.+
T Consensus 198 ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 198 GAEYDLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp CCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred CCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 999999999999999999654 45555543
No 18
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1e-37 Score=321.09 Aligned_cols=232 Identities=22% Similarity=0.221 Sum_probs=201.7
Q ss_pred CCcHHHHHHHHcCCHHHHHHHH--------hcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh
Q 010335 9 ASGERLVSAARDGDFVEAKMLL--------DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQT 80 (513)
Q Consensus 9 ~~~~~L~~Aa~~G~~e~vk~LL--------~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~T 80 (513)
.+.++||.|+..|+.+++++|+ +.|.+++..+..+ .||||+|+..|+.++|++|+++|++++.+|..|.|
T Consensus 124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g--~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t 201 (373)
T 2fo1_E 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE--NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS 201 (373)
T ss_dssp SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCC--CCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCC
Confidence 4668999999999998888776 7788877655444 89999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcC---CCCCcccCCCCCcHHHHHHHcC---CHHHHHHHHHccCCCCccccchhhhcccCCC
Q 010335 81 ALMQACRYGHWEVVQTLLLFR---CNVTRADYLSGRTALHFAAVNG---HVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 154 (513)
Q Consensus 81 pLh~A~~~g~~eiVk~LL~~g---a~~~~~~~~~G~TpLh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~ 154 (513)
|||+|+..|+.++|++|++++ ++++..+. .|.||||+|+..+ +.+++++|++.+........
T Consensus 202 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~-~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~----------- 269 (373)
T 2fo1_E 202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA----------- 269 (373)
T ss_dssp HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT-TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG-----------
T ss_pred HHHHHHHCCCHHHHHHHHhcCccccChhhcCC-CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc-----------
Confidence 999999999999999999987 78887775 8999999999988 89999999987764322110
Q ss_pred CchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCccccccCCCCchhHHHhhCCC
Q 010335 155 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 233 (513)
Q Consensus 155 ~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~ 233 (513)
...+..+..|.||||+|+..|+.++|++|+++| ++++..+.. |.||||+|+..|+
T Consensus 270 --------------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~----------g~TpL~~A~~~g~ 325 (373)
T 2fo1_E 270 --------------ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED----------GKTPIMLAAQEGR 325 (373)
T ss_dssp --------------GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT----------CCCHHHHHHHHTC
T ss_pred --------------cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCC----------CCCHHHHHHHcCC
Confidence 013456778999999999999999999999886 999999977 9999999999999
Q ss_pred HHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335 234 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278 (513)
Q Consensus 234 ~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~ 278 (513)
.++|++|+++|++++.+|..|+||||+|+..|+.+++++|.+...
T Consensus 326 ~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a 370 (373)
T 2fo1_E 326 IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370 (373)
T ss_dssp HHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999987653
No 19
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=7.2e-38 Score=310.73 Aligned_cols=248 Identities=24% Similarity=0.266 Sum_probs=201.5
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g 89 (513)
+.++|+.|+..|++++|++|++.|++++.....+ .||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|
T Consensus 40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g 117 (299)
T 1s70_B 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDG--LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117 (299)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTC--CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 4689999999999999999999999887655444 89999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335 90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK 169 (513)
Q Consensus 90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
+.++|++|+++|++++..+. .|.||||+|+..++.+++++|+.................. ....... ......
T Consensus 118 ~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~--l~~~~~ 190 (299)
T 1s70_B 118 YLDIAEYLISQGAHVGAVNS-EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM----LRDARQW--LNSGHI 190 (299)
T ss_dssp CHHHHHHHHHTTCCTTCCCT-TSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH----HHHHHHH--HHHTCC
T ss_pred CHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHH----HHHHHHH--HhccCc
Confidence 99999999999999998885 8999999999999999999988653321110000000000 0000000 000000
Q ss_pred hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335 170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 249 (513)
Q Consensus 170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~ 249 (513)
.....+..|.||||+|+..|+.++|++|+++|++++..+.. |.||||+|+..|+.++|++|+++|++++.
T Consensus 191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~~gad~~~ 260 (299)
T 1s70_B 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD----------GWTPLHAAAHWGKEEACRILVENLCDMEA 260 (299)
T ss_dssp CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred chhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCC----------CCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Confidence 12235567999999999999999999999999999999876 99999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335 250 LNCNGWLPLDVARMWGRHWLEPLLAPS 276 (513)
Q Consensus 250 ~d~~G~TpL~~A~~~g~~~iv~lL~~~ 276 (513)
+|..|+||||+|.+.....+.+++...
T Consensus 261 ~d~~g~t~l~~A~~~~~~~l~~l~~~~ 287 (299)
T 1s70_B 261 VNKVGQTAFDVADEDILGYLEELQKKQ 287 (299)
T ss_dssp CCTTSCCTTTSCCSGGGHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999776555555555443
No 20
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=8.5e-37 Score=308.67 Aligned_cols=224 Identities=28% Similarity=0.317 Sum_probs=192.5
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
..+.++||.|+..|+.+++++|+++|.+++..+..+ .||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 56 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~ 133 (351)
T 3utm_A 56 GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG--LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS 133 (351)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC--CcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 345789999999999999999999999987665544 899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccC-----------------------------------------------------CCCCc
Q 010335 88 YGHWEVVQTLLLFRCNVTRADY-----------------------------------------------------LSGRT 114 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~-----------------------------------------------------~~G~T 114 (513)
.|+.+++++|+++|++++..+. ..|.|
T Consensus 134 ~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t 213 (351)
T 3utm_A 134 KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET 213 (351)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCC
T ss_pred cCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCC
Confidence 9999999999999999876553 23455
Q ss_pred HHHHHHHc---CCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCH
Q 010335 115 ALHFAAVN---GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 191 (513)
Q Consensus 115 pLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~ 191 (513)
|||+|+.. +..+++++|++.+.. ++..+..|.||||+|+.+|+.
T Consensus 214 ~L~~A~~~~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~g~~ 260 (351)
T 3utm_A 214 ALHCAVASLHPKRKQVAELLLRKGAN---------------------------------VNEKNKDFMTPLHVAAERAHN 260 (351)
T ss_dssp HHHHHHHCCSTTHHHHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHHHhCccHHHHHHHHHHcCCC---------------------------------cCCcCCCCCCHHHHHHHcCCH
Confidence 66666655 335556666554432 677888999999999999999
Q ss_pred HHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhh
Q 010335 192 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEP 271 (513)
Q Consensus 192 eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~ 271 (513)
++|++|+++|++++..+.. |.||||+|+..|+.++|++|+++|++++.+|..|+||+++| +.++++
T Consensus 261 ~~v~~Ll~~ga~~n~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~ 326 (351)
T 3utm_A 261 DVMEVLHKHGAKMNALDSL----------GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQ 326 (351)
T ss_dssp HHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHH
T ss_pred HHHHHHHHCCCCCCCcCCC----------CCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHH
Confidence 9999999999999999977 99999999999999999999999999999999999999998 567788
Q ss_pred hcCCCCCCC
Q 010335 272 LLAPSSDAV 280 (513)
Q Consensus 272 lL~~~~~~~ 280 (513)
+|.+.....
T Consensus 327 ~l~~~~~~~ 335 (351)
T 3utm_A 327 ILSESTPMR 335 (351)
T ss_dssp HHHHC----
T ss_pred HHHhccccc
Confidence 887765543
No 21
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=6.4e-37 Score=292.71 Aligned_cols=224 Identities=25% Similarity=0.310 Sum_probs=203.4
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHc
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQTALMQACRY 88 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d-~~g~TpLh~A~~~ 88 (513)
+.++|+.|++.|+++++++|++.|.+++..... |.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..
T Consensus 9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 9 STWDIVKATQYGIYERCRELVEAGYDVRQPDKE--NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp GGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred cchHHHHHHHcCChHHHHHHHHcCCCcCCCCCC--CCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc
Confidence 456799999999999999999999888765544 4899999999999999999999999988665 4599999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335 89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168 (513)
Q Consensus 89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 87 ~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~------------------------------- 134 (240)
T 3eu9_A 87 GHLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKGQD------------------------------- 134 (240)
T ss_dssp TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------------
T ss_pred CCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCHHHHHHHHHhcCCC-------------------------------
Confidence 999999999999999998875 899999999999999999999987553
Q ss_pred HhcccccCCCCcHHHHHHHcCC-HHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCC
Q 010335 169 KFVNKAADGGITALHMAALNGY-FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 247 (513)
Q Consensus 169 ~~i~~~d~~G~TpLh~Aa~~g~-~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~ 247 (513)
++..+..|.||||+|+..++ .+++++|++.|++++..+.. .|.||||+|+..|+.+++++|+++|+++
T Consensus 135 --~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~---------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 203 (240)
T 3eu9_A 135 --VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY---------HKNTALHWAVLAGNTTVISLLLEAGANV 203 (240)
T ss_dssp --TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTT---------TCCCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred --ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhcc---------CCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 56678889999999997776 89999999999999998862 2899999999999999999999999999
Q ss_pred CCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335 248 MSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278 (513)
Q Consensus 248 ~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~ 278 (513)
+.+|..|+|||++|+..|+.+++++|.+...
T Consensus 204 ~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 204 DAQNIKGESALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred CCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence 9999999999999999999999999987654
No 22
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.4e-36 Score=298.16 Aligned_cols=241 Identities=23% Similarity=0.221 Sum_probs=185.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHH
Q 010335 43 GGLNSPLHFAAAKGHNEIVALLLENGAD---VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA 119 (513)
Q Consensus 43 ~~g~TpLh~Aa~~g~~eivk~LL~~Gad---vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A 119 (513)
..|.||||+|+..|+.++|++|+++|++ ++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|+||||+|
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A 85 (282)
T 1oy3_D 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER-GGHTALHLA 85 (282)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT-TSCCHHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHH
Confidence 4459999999999999999999999998 889999999999999999999999999999999998885 899999999
Q ss_pred HHcCCHHHHHHHHHccCCCCccccchhhhcccC--------------CCCchhhhhhchhHHHHhcccccCCCCcHHHHH
Q 010335 120 AVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDR--------------GDGSSVKSKCDQSALSKFVNKAADGGITALHMA 185 (513)
Q Consensus 120 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~A 185 (513)
+..|+.+++++|++.+................. ..................++..+..|.||||+|
T Consensus 86 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A 165 (282)
T 1oy3_D 86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA 165 (282)
T ss_dssp TTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred HHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHH
Confidence 999999999999987654321111000000000 000000000000111234678889999999999
Q ss_pred HHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Q 010335 186 ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265 (513)
Q Consensus 186 a~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g 265 (513)
+..|+.++|++|+++|++++..+.. .|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|
T Consensus 166 ~~~g~~~~v~~Ll~~g~~~~~~~~~---------~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~ 236 (282)
T 1oy3_D 166 VIHKDAEMVRLLRDAGADLNKPEPT---------CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236 (282)
T ss_dssp HHTTCHHHHHHHHHHTCCTTCCCTT---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCC---------CCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcC
Confidence 9999999999999999999988743 2999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCCCCCCCCCCCCCccccchhH
Q 010335 266 RHWLEPLLAPSSDAVMPRFHPSNYLSLPLLS 296 (513)
Q Consensus 266 ~~~iv~lL~~~~~~~~~~~~~~~~~~~~l~~ 296 (513)
+.+++++|.+.+.... ..+..+.+|+..
T Consensus 237 ~~~~v~~Ll~~ga~~~---~~~~~g~tpl~~ 264 (282)
T 1oy3_D 237 NPILARLLRAHGAPEP---EDGGDKLSPCSS 264 (282)
T ss_dssp CHHHHHHHHHTTCCCC---CCC---------
T ss_pred CcHHHHHHHHcCCCcC---cCCCcccccccc
Confidence 9999988876554322 225666777554
No 23
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.1e-35 Score=300.70 Aligned_cols=240 Identities=26% Similarity=0.260 Sum_probs=170.5
Q ss_pred cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH 90 (513)
Q Consensus 11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~ 90 (513)
.++|+.||+.||+++|++||++|++++..... .|.||||+|+..|+.++|++||++|++++.++..+.++++.++..++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~-~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 104 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE-GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGS 104 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCC-CCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhccc
Confidence 46899999999999999999999998765433 34899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHh
Q 010335 91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 170 (513)
Q Consensus 91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (513)
..++..++..+++++..+. .|.||||+|+..|+.+++++|++.+.......... ..
T Consensus 105 ~~~~~~~~~~~~~~~~~d~-~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~-----------------------~~ 160 (337)
T 4g8k_A 105 VKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK-----------------------ED 160 (337)
T ss_dssp HHHHHHHHTTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-------------------------
T ss_pred chhhHHhhhccchhhhhcc-CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccc-----------------------cc
Confidence 9999999999999998886 99999999999999999999998876533211110 01
Q ss_pred cccccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccCCcccc---------------------------ccCCCC
Q 010335 171 VNKAADGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSMD---------------------------LIGAGS 222 (513)
Q Consensus 171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~-~Gadvn~~~~~~~~~~~---------------------------~~~~G~ 222 (513)
....+..|.||||+|+.+|+.++|++|++ .|++++..+....++.. ....|.
T Consensus 161 ~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~ 240 (337)
T 4g8k_A 161 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 240 (337)
T ss_dssp ---CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGC
T ss_pred cccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCC
Confidence 23344456666666666666666666663 36666655544000000 001155
Q ss_pred chhHHHhhCCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHcCccchhhhcCC
Q 010335 223 TPLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLPLDVARMWGRHWLEPLLAP 275 (513)
Q Consensus 223 TpLh~Aa~~g~~eivk~LL~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~ 275 (513)
||||+|+..|+.++|++|++. |++++.+|.+|+||||+|+..|+.+++++|++
T Consensus 241 t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 294 (337)
T 4g8k_A 241 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 294 (337)
T ss_dssp CHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 555555555555555555543 55555555555555555555555555554444
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.1e-35 Score=282.97 Aligned_cols=208 Identities=28% Similarity=0.347 Sum_probs=187.5
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHH
Q 010335 41 TFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120 (513)
Q Consensus 41 ~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~ 120 (513)
.+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+
T Consensus 7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~ 85 (237)
T 3b7b_A 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA-EGSTCLHLAA 85 (237)
T ss_dssp SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCT-TSCCHHHHHH
T ss_pred ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHH
Confidence 444559999999999999999999999999999999999999999999999999999999999998885 8999999999
Q ss_pred HcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 200 (513)
Q Consensus 121 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~ 200 (513)
..|+.+++++|++.+.. .++..+..|.||||+|+..|+.+++++|+++
T Consensus 86 ~~~~~~~~~~Ll~~~~~--------------------------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 133 (237)
T 3b7b_A 86 KKGHYEVVQYLLSNGQM--------------------------------DVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133 (237)
T ss_dssp HTTCHHHHHHHHTTTCC--------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHhCCCC--------------------------------CcccCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 99999999999976521 1566778899999999999999999999999
Q ss_pred CCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC-CC
Q 010335 201 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS-DA 279 (513)
Q Consensus 201 Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~-~~ 279 (513)
|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|.+.+ +.
T Consensus 134 g~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~ 203 (237)
T 3b7b_A 134 GSDINIRDNE----------ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203 (237)
T ss_dssp TCCTTCCCTT----------SCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred CCCCCccCCC----------CCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence 9999998876 999999999999999999999999999999999999999999999999998877654 33
Q ss_pred CCCCCCCCCccccchh
Q 010335 280 VMPRFHPSNYLSLPLL 295 (513)
Q Consensus 280 ~~~~~~~~~~~~~~l~ 295 (513)
... +..+.+|+.
T Consensus 204 ~~~----d~~g~t~l~ 215 (237)
T 3b7b_A 204 TLK----NKEGETPLQ 215 (237)
T ss_dssp TCC----CTTSCCHHH
T ss_pred Ccc----CCCCCCHHH
Confidence 333 556667654
No 25
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-36 Score=312.14 Aligned_cols=255 Identities=21% Similarity=0.169 Sum_probs=206.6
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHH--------HCCCCCCCCCCCCC
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLL--------ENGADVNSRNYCGQ 79 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL--------~~Gadvn~~d~~g~ 79 (513)
+.+.++||.|+..| .+++++|+..+ ++... ...|.||||+|+..|+.++|++|+ +.|+++|.+|..|.
T Consensus 92 ~~g~t~L~~Aa~~~-~~~~~~L~~~~--~n~~d-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~ 167 (373)
T 2fo1_E 92 PESPIKLHTEAAGS-YAITEPITRES--VNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN 167 (373)
T ss_dssp --CCCHHHHHHHSS-SCCCSCCSTTT--TTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSC
T ss_pred CCCccHHHHHhcCC-chHHHHhcccc--ccccC-CcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence 44578899999955 47888887643 33222 234599999999999998888776 89999999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhh
Q 010335 80 TALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVK 159 (513)
Q Consensus 80 TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (513)
||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+.
T Consensus 168 TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~----------------------- 223 (373)
T 2fo1_E 168 TPLMLAVLARRRRLVAYLMKAGADPTIYNK-SERSALHQAAANRDFGMMVYMLNSTK----------------------- 223 (373)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHH-----------------------
T ss_pred CHHHHHHHcChHHHHHHHHHCCCCCcccCC-CCCCHHHHHHHCCCHHHHHHHHhcCc-----------------------
Confidence 999999999999999999999999998886 99999999999999999999986431
Q ss_pred hhhchhHHHHhcccccCCCCcHHHHHHHcC---CHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHH
Q 010335 160 SKCDQSALSKFVNKAADGGITALHMAALNG---YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 236 (513)
Q Consensus 160 ~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g---~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~ei 236 (513)
....++..+..|.||||+|+..+ +.+++++|+++|++++..+..... .....|.||||+|+..|+.++
T Consensus 224 -------~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~--~~d~~g~t~Lh~A~~~g~~~~ 294 (373)
T 2fo1_E 224 -------LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD--SEKYKGRTALHYAAQVSNMPI 294 (373)
T ss_dssp -------HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS--SSSCCCCCTHHHHHSSCCHHH
T ss_pred -------cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccC--cccccCCCHHHHHHHhCCHHH
Confidence 11236778899999999999998 899999999999999863211000 001239999999999999999
Q ss_pred HHHHHHCC-CCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCC-CCCCCCCCCccccchhHHHHHHHHhCCC
Q 010335 237 CQVLLSRG-ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA-VMPRFHPSNYLSLPLLSVLNVARECGLL 307 (513)
Q Consensus 237 vk~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~-~~~~~~~~~~~~~~l~~~l~~a~e~g~~ 307 (513)
|++|+++| ++++.+|.+|+||||+|+..|+.+++++|++.+.. +.. +..+.+| +++|...|..
T Consensus 295 v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~----d~~g~t~----l~~A~~~g~~ 359 (373)
T 2fo1_E 295 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV----DATDHTA----RQLAQANNHH 359 (373)
T ss_dssp HHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCC----CSSSCCH----HHHHHHTTCH
T ss_pred HHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCC----CCCCCCH----HHHHHHcCCH
Confidence 99999875 99999999999999999999999999988775433 332 4555665 5666666654
No 26
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.1e-35 Score=288.97 Aligned_cols=216 Identities=25% Similarity=0.287 Sum_probs=164.2
Q ss_pred CCCCcHHHHHHHcC-------------CHHHHHHHHHCCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccc
Q 010335 43 GGLNSPLHFAAAKG-------------HNEIVALLLENGADVNS-RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRAD 108 (513)
Q Consensus 43 ~~g~TpLh~Aa~~g-------------~~eivk~LL~~Gadvn~-~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~ 108 (513)
..|.||||+|+..| +.+++++|++.|++++. .|..|.||||+|+..|+.++|++|+++|++++..+
T Consensus 8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 87 (253)
T 1yyh_A 8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD 87 (253)
T ss_dssp --------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 34599999999987 89999999999999865 58999999999999999999999999999999888
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHc
Q 010335 109 YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 188 (513)
Q Consensus 109 ~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~ 188 (513)
. .|.||||+|+..|+.+++++|++.+... ++..+..|.||||+|+..
T Consensus 88 ~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--------------------------------~~~~~~~g~t~L~~A~~~ 134 (253)
T 1yyh_A 88 N-MGRTPLHAAVSADAQGVFQILIRNRATD--------------------------------LDARMHDGTTPLILAARL 134 (253)
T ss_dssp T-TSCCHHHHHHHHTCHHHHHHHHHSTTSC--------------------------------TTCCCTTCCCHHHHHHHH
T ss_pred C-CCCCHHHHHHHcCCHHHHHHHHHcCCCC--------------------------------ccccCCCCCcHHHHHHHc
Confidence 5 8999999999999999999999865421 566788899999999999
Q ss_pred CCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccc
Q 010335 189 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 268 (513)
Q Consensus 189 g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~ 268 (513)
|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus 135 ~~~~~v~~Ll~~g~~~~~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~ 204 (253)
T 1yyh_A 135 AVEGMLEDLINSHADVNAVDDL----------GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE 204 (253)
T ss_dssp TCSSHHHHHHHTTCCTTCBCTT----------SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred ChHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHH
Confidence 9999999999999999999876 999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCC-CCCCCCCCCCccccchhHHHHHHHHhCCCCC
Q 010335 269 LEPLLAPSSD-AVMPRFHPSNYLSLPLLSVLNVARECGLLSS 309 (513)
Q Consensus 269 iv~lL~~~~~-~~~~~~~~~~~~~~~l~~~l~~a~e~g~~~~ 309 (513)
++++|++.+. .+.. +..+.+| +++|.+.|..++
T Consensus 205 ~v~~Ll~~ga~~~~~----d~~g~tp----l~~A~~~g~~~i 238 (253)
T 1yyh_A 205 TAKVLLDHFANRDIT----DHMDRLP----RDIAQERMHHDI 238 (253)
T ss_dssp HHHHHHHTTCCTTCC----CTTCCCH----HHHHHHTTCHHH
T ss_pred HHHHHHHcCCCcccc----ccCCCCH----HHHHHHcCCHHH
Confidence 9988877643 3332 5556666 667777776543
No 27
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.4e-35 Score=286.83 Aligned_cols=203 Identities=26% Similarity=0.269 Sum_probs=182.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
|+||||+|+..|+.++|++|+++|+++|.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA-DWHTPLFNACVSGS 81 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCC
Confidence 48999999999999999999999999999999999999999999999999999999999998885 89999999999999
Q ss_pred HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335 125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 204 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv 204 (513)
.+++++|++.+... + .+..|.||||+|+..|+.+++++|+++|+++
T Consensus 82 ~~~v~~Ll~~g~~~---------------------------------~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 127 (261)
T 2xai_A 82 WDCVNLLLQHGASV---------------------------------Q-PESDLASPIHEAARRGHVECVNSLIAYGGNI 127 (261)
T ss_dssp HHHHHHHHHTTCCS---------------------------------S-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC---------------------------------C-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence 99999999876541 1 1345899999999999999999999999999
Q ss_pred ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC-CCCCCC
Q 010335 205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS-DAVMPR 283 (513)
Q Consensus 205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~-~~~~~~ 283 (513)
+..+.. |.||||+|+..|+.+++++|+++|++++. +..|+||||+|+..++.+++++|.+.+ +.+..
T Consensus 128 ~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~- 195 (261)
T 2xai_A 128 DHKISH----------LGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAK- 195 (261)
T ss_dssp TCCBTT----------TBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCC-
T ss_pred CcCCCC----------CCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCc-
Confidence 999876 99999999999999999999999999996 889999999999999999998887654 33333
Q ss_pred CCCCCccccchhHH
Q 010335 284 FHPSNYLSLPLLSV 297 (513)
Q Consensus 284 ~~~~~~~~~~l~~~ 297 (513)
+..+.+|+..+
T Consensus 196 ---d~~g~tpl~~A 206 (261)
T 2xai_A 196 ---NAEGKRPVELV 206 (261)
T ss_dssp ---CTTSCCGGGGS
T ss_pred ---CCCCCChhhhc
Confidence 56677776543
No 28
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=6.2e-35 Score=279.88 Aligned_cols=213 Identities=27% Similarity=0.286 Sum_probs=188.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHH
Q 010335 42 FGGLNSPLHFAAAKGHNEIVALLLE----NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALH 117 (513)
Q Consensus 42 ~~~g~TpLh~Aa~~g~~eivk~LL~----~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh 117 (513)
+..|.||||+|+..|+.++|++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~ 84 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR-HGQTAAH 84 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHH
Confidence 3445999999999999999999997 8999999999999999999999999999999999999998885 8999999
Q ss_pred HHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHH
Q 010335 118 FAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 197 (513)
Q Consensus 118 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~L 197 (513)
+|+..|+.+++++|++.+.... ..++..+..|.||||+|+..|+.+++++|
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~-----------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 135 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGT-----------------------------LDLEARNYDGLTALHVAVNTECQETVQLL 135 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTS-----------------------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCcc-----------------------------ccccccCcCCCcHHHHHHHcCCHHHHHHH
Confidence 9999999999999998765210 01566778899999999999999999999
Q ss_pred HHcCCCccccc-ccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335 198 LDLHANVSAVT-FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS 276 (513)
Q Consensus 198 l~~Gadvn~~~-~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~ 276 (513)
+++|++++..+ .. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+.
T Consensus 136 l~~g~~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 205 (241)
T 1k1a_A 136 LERGADIDAVDIKS----------GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 205 (241)
T ss_dssp HHTTCCTTCCCTTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred HHcCCCcccccccC----------CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 99999999888 44 99999999999999999999999999999999999999999999999999888765
Q ss_pred CC-CCCCCCCCCCccccchhHHH
Q 010335 277 SD-AVMPRFHPSNYLSLPLLSVL 298 (513)
Q Consensus 277 ~~-~~~~~~~~~~~~~~~l~~~l 298 (513)
+. .+.. +..+.+|+..+.
T Consensus 206 ga~~~~~----~~~g~tpl~~A~ 224 (241)
T 1k1a_A 206 GADSSLK----NCHNDTPLMVAR 224 (241)
T ss_dssp TCCTTCC----CTTSCCTTTTCS
T ss_pred CCCCCCc----CCCCCCHHHHHH
Confidence 43 3322 556677765444
No 29
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.6e-36 Score=300.55 Aligned_cols=209 Identities=20% Similarity=0.123 Sum_probs=140.1
Q ss_pred HHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHH
Q 010335 18 ARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97 (513)
Q Consensus 18 a~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~L 97 (513)
++..+.+.++.||..+ +++.. +..|.||||+|+..|+.++|++|+++|++++..| |.||||+|+..|+.++|++|
T Consensus 7 i~~~~~~~v~~lL~~~-~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK-DTFKA--DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp GGGCCHHHHHHHHHST-TTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHH
T ss_pred HHhcCHHHHHHHHHhC-CCCcc--CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHH
Confidence 4455555555555443 23222 2333677777777777777777777777776663 67777777777777777777
Q ss_pred HhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCC
Q 010335 98 LLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG 177 (513)
Q Consensus 98 L~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 177 (513)
+++|++++..+. .|.||||+|+..|+.+++++|++.+.. ++..+..
T Consensus 82 l~~ga~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~~~~ 127 (285)
T 3kea_A 82 LFSGLDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWR---------------------------------LMFYGKT 127 (285)
T ss_dssp HHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCGG---------------------------------GGGCSSS
T ss_pred HHCCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhcCCC---------------------------------CCccCCC
Confidence 777777776664 677777777777777777777765432 4555666
Q ss_pred C-CcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCc
Q 010335 178 G-ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 256 (513)
Q Consensus 178 G-~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~T 256 (513)
| .||||+|+..|+.+++++|+++|+++...+ . |.||||+|+..|+.++|++|+++|++++.+|..|+|
T Consensus 128 g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~----------g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t 196 (285)
T 3kea_A 128 GWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA-I----------LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFI 196 (285)
T ss_dssp GGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCS-T----------HHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCcccccc-C----------CccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCC
Confidence 6 577777777777777777777776653321 1 667777777777777777777777777777777777
Q ss_pred H-HHHHHHcCccchhhhcCCC
Q 010335 257 P-LDVARMWGRHWLEPLLAPS 276 (513)
Q Consensus 257 p-L~~A~~~g~~~iv~lL~~~ 276 (513)
| ||+|+..|+.+++++|++.
T Consensus 197 ~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 197 PDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp TTHHHHHHHTCHHHHHHHTTS
T ss_pred hHHHHHHHcCCHHHHHHHHHc
Confidence 6 7777777777777666554
No 30
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=3.2e-35 Score=280.95 Aligned_cols=204 Identities=26% Similarity=0.277 Sum_probs=176.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCC-----CcccCCCCCcHHHH
Q 010335 45 LNSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV-----TRADYLSGRTALHF 118 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~-Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~-----~~~~~~~G~TpLh~ 118 (513)
|+||||+|+..|+.++|++|++. |++++.+|..|.||||+|+..|+.++|++|+++|+++ +..+ ..|.||||+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~~g~t~L~~ 81 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL-YEGQTALHI 81 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTT-TTTCCHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccC-CCCcCHHHH
Confidence 48999999999999999999997 9999999999999999999999999999999999886 3333 379999999
Q ss_pred HHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHH
Q 010335 119 AAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 198 (513)
Q Consensus 119 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll 198 (513)
|+..|+.+++++|++.+........... +....+..+..|.||||+|+..|+.++|++|+
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~--------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 141 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSV--------------------FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGG--------------------GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcc--------------------eeecccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999999988765432211100 01114556778999999999999999999999
Q ss_pred HcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHH----HHHHHCCCCC------CCcCCCCCcHHHHHHHcCccc
Q 010335 199 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC----QVLLSRGASR------MSLNCNGWLPLDVARMWGRHW 268 (513)
Q Consensus 199 ~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eiv----k~LL~~Gad~------~~~d~~G~TpL~~A~~~g~~~ 268 (513)
++|++++..|.. |.||||+|+..|+.+++ ++|+++|+++ +.+|..|+||||+|+..|+.+
T Consensus 142 ~~ga~~~~~d~~----------g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~ 211 (232)
T 2rfa_A 142 EHGADIRAQDSL----------GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIV 211 (232)
T ss_dssp HTTCCTTCCCTT----------SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHH
T ss_pred HCCCCCCCCCCC----------CCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHH
Confidence 999999999977 99999999999999988 9999999998 588999999999999999999
Q ss_pred hhhhcCCCCCC
Q 010335 269 LEPLLAPSSDA 279 (513)
Q Consensus 269 iv~lL~~~~~~ 279 (513)
++++|++++..
T Consensus 212 ~v~~Ll~~g~~ 222 (232)
T 2rfa_A 212 MFQHLMQKRKH 222 (232)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhcCcc
Confidence 99999876543
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.9e-35 Score=291.52 Aligned_cols=214 Identities=19% Similarity=0.164 Sum_probs=194.4
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
..+.++||.|++.|+.+++++|++.|++++.. + |.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.
T Consensus 29 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~ 104 (285)
T 3kea_A 29 VHGHSASYYAIADNNVRLVCTLLNAGALKNLL--E--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVD 104 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--T--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--C--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHH
Confidence 45678999999999999999999999887655 2 4999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccCCCC-CcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335 88 YGHWEVVQTLLLFRCNVTRADYLSG-RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~~~G-~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (513)
.|+.++|++|+++|++++..+. .| .||||+|+..|+.+++++|++.+...
T Consensus 105 ~g~~~~v~~Ll~~ga~~~~~~~-~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---------------------------- 155 (285)
T 3kea_A 105 SGNMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEIPST---------------------------- 155 (285)
T ss_dssp TTCHHHHHHHHHHCGGGGGCSS-SGGGSHHHHHHHTTCHHHHHHHHTTSCTT----------------------------
T ss_pred cCCHHHHHHHHhcCCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCcc----------------------------
Confidence 9999999999999999998886 77 89999999999999999999876421
Q ss_pred HHHhcccccC-CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCch-hHHHhhCCCHHHHHHHHHCC
Q 010335 167 LSKFVNKAAD-GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP-LHFAACGGNLKCCQVLLSRG 244 (513)
Q Consensus 167 ~~~~i~~~d~-~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~Tp-Lh~Aa~~g~~eivk~LL~~G 244 (513)
.+. .|.||||+|+..|+.++|++|+++|++++..+.. |.|| ||+|+..|+.+++++|+++|
T Consensus 156 -------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~----------g~t~~L~~A~~~~~~~~v~~Ll~~g 218 (285)
T 3kea_A 156 -------FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL----------LFIPDIKLAIDNKDIEMLQALFKYD 218 (285)
T ss_dssp -------CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCC----------BCCTTHHHHHHHTCHHHHHHHTTSC
T ss_pred -------ccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCC----------CCChHHHHHHHcCCHHHHHHHHHcC
Confidence 122 7999999999999999999999999999999976 9997 99999999999999999999
Q ss_pred CCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335 245 ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278 (513)
Q Consensus 245 ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~ 278 (513)
++++.+|. .|+..|+.+++++|++.+.
T Consensus 219 ad~~~~~~-------~a~~~~~~~iv~~Ll~~g~ 245 (285)
T 3kea_A 219 INIYSANL-------ENVLLDDAEIAKMIIEKHV 245 (285)
T ss_dssp BCSTTTTG-------GGGTTTCHHHHHHHHHHHH
T ss_pred CCCCCCCh-------hhhhcCCHHHHHHHHHcCC
Confidence 99999883 5677899999999887553
No 32
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.1e-34 Score=274.11 Aligned_cols=208 Identities=25% Similarity=0.253 Sum_probs=182.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHhcC--CCCCcccCCCCCcHHHHHHH
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNS-RNYCGQTALMQACRYGHWEVVQTLLLFR--CNVTRADYLSGRTALHFAAV 121 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~-~d~~g~TpLh~A~~~g~~eiVk~LL~~g--a~~~~~~~~~G~TpLh~A~~ 121 (513)
|+||||+|+..|+.++|++|++.|.++.. .|..|.||||+|+..|+.+++++|+++| .+++...+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 48999999999999999999999987654 8999999999999999999999999999 55555233489999999999
Q ss_pred cCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 010335 122 NGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201 (513)
Q Consensus 122 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G 201 (513)
.|+.+++++|++.+... .++..+..|.||||+|+..|+.+++++|+++|
T Consensus 82 ~~~~~~~~~Ll~~g~~~-------------------------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 130 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKP-------------------------------DLNKITNQGVTCLHLAVGKKWFEVSQFLIENG 130 (228)
T ss_dssp HCCHHHHHHHHSSSSCC-------------------------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhCCCCc-------------------------------ccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC
Confidence 99999999999875211 15667888999999999999999999999999
Q ss_pred CCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC-CCCCCcCCCCCcHHHHHHHcCccchhhhcC-C-CCC
Q 010335 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG-ASRMSLNCNGWLPLDVARMWGRHWLEPLLA-P-SSD 278 (513)
Q Consensus 202 advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~-~-~~~ 278 (513)
++++..+.. |.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|. + +.+
T Consensus 131 ~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~ 200 (228)
T 2dzn_A 131 ASVRIKDKF----------NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200 (228)
T ss_dssp CCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC
T ss_pred CCccccCCC----------CCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence 999999876 999999999999999999999999 999999999999999999999999999887 4 444
Q ss_pred CCCCCCCCCCccccchhHH
Q 010335 279 AVMPRFHPSNYLSLPLLSV 297 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~ 297 (513)
.+.. +..+.+|+..+
T Consensus 201 ~~~~----~~~g~t~l~~A 215 (228)
T 2dzn_A 201 YDLV----DNKGAKAEDVA 215 (228)
T ss_dssp SCCB----CTTSCBGGGGC
T ss_pred CCcc----CCCCCcHHHHH
Confidence 4443 55666776543
No 33
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.4e-33 Score=285.40 Aligned_cols=250 Identities=25% Similarity=0.227 Sum_probs=203.9
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g 89 (513)
+.+|||.|++.|+.++|++||++|++++.....+ .+++++++..++..++..+++.+++++..|..|.||||+|+..|
T Consensus 59 g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~ 136 (337)
T 4g8k_A 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG--ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 136 (337)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCC--CchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcC
Confidence 5689999999999999999999999987665544 89999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCcccC---------CCCCcHHHHHHHcCCHHHHHHHHHc-cCCCCccc---cchhhh---cccCC
Q 010335 90 HWEVVQTLLLFRCNVTRADY---------LSGRTALHFAAVNGHVRCIRLVVAD-FVPSVPFE---VMNTQI---EGDRG 153 (513)
Q Consensus 90 ~~eiVk~LL~~ga~~~~~~~---------~~G~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~---~~~~~~---~~~~~ 153 (513)
+.+++++|+++|++++.... ..|.||||+|+..|+.+++++|++. +....... ...... .....
T Consensus 137 ~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~ 216 (337)
T 4g8k_A 137 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 216 (337)
T ss_dssp CHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTT
T ss_pred cHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcc
Confidence 99999999999999875432 3689999999999999999999964 44322111 111110 00000
Q ss_pred CCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCccccccCCCCchhHHHhhCC
Q 010335 154 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 232 (513)
Q Consensus 154 ~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~-Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g 232 (513)
....+... .......++.++..|+||||+|+..|+.++|++|++. |++++..+.. |.||||+|+..|
T Consensus 217 ~~~~i~~l--Ll~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~----------G~TpL~~A~~~g 284 (337)
T 4g8k_A 217 DVEAITHL--LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD----------GKTALLLAVELK 284 (337)
T ss_dssp THHHHHHH--HHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTT----------SCBHHHHHHHTT
T ss_pred cHHHHHHH--HHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCC----------CCCHHHHHHHcC
Confidence 00000000 0111234678899999999999999999999999985 8999999977 999999999999
Q ss_pred CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335 233 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278 (513)
Q Consensus 233 ~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~ 278 (513)
+.++|++||++||+++.+ +|||+|+..|+.+++++|+++++
T Consensus 285 ~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA 325 (337)
T 4g8k_A 285 LKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGA 325 (337)
T ss_dssp CHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcC
Confidence 999999999999998754 59999999999999998877553
No 34
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=3.5e-34 Score=267.31 Aligned_cols=188 Identities=22% Similarity=0.219 Sum_probs=150.7
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 46 NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~Ga-dvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
.||||+|+..|+.+++++|++.+. +++..|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS-ISDSPYLYAGAQGR 84 (201)
T ss_dssp TTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred ccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCC
Confidence 688888888888888888887765 7888888888888888888888888888888888877765 78888888888888
Q ss_pred HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC-CC
Q 010335 125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-AN 203 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G-ad 203 (513)
.+++++|++.+.. .++..+..|.||||+|+..|+.+++++|+++| ++
T Consensus 85 ~~~~~~Ll~~~~~--------------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 132 (201)
T 3hra_A 85 TEILAYMLKHATP--------------------------------DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED 132 (201)
T ss_dssp HHHHHHHHHHSCC--------------------------------CTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhccCc--------------------------------ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 8888888844321 15566677888888888888888888888888 78
Q ss_pred cccccccCCccccccCCCCchhHHHhhCCC-----HHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335 204 VSAVTFHYGTSMDLIGAGSTPLHFAACGGN-----LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS 276 (513)
Q Consensus 204 vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~-----~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~ 276 (513)
++..+.. |.||||+|+..++ .+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+.
T Consensus 133 ~~~~~~~----------g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 133 IDFQNDF----------GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp TTCCCTT----------SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred cCCCCCC----------CCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 8877765 8888888888877 8888888888888888888888888888888888888877654
No 35
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1e-35 Score=285.54 Aligned_cols=200 Identities=24% Similarity=0.308 Sum_probs=160.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHH
Q 010335 44 GLNSPLHFAAAKGHNEIVALLLENGA----DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA 119 (513)
Q Consensus 44 ~g~TpLh~Aa~~g~~eivk~LL~~Ga----dvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A 119 (513)
.|.||||+|+..|+.+++++|++.+. +++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|
T Consensus 7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A 85 (236)
T 1ikn_D 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF-RGNTPLHLA 85 (236)
T ss_dssp CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT-TCCCHHHHH
T ss_pred CCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHH
Confidence 45888888888888888888887654 6888888888888888888888888888888888887775 788888888
Q ss_pred HHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHH
Q 010335 120 AVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 199 (513)
Q Consensus 120 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~ 199 (513)
+..|+.+++++|++.+..... ...++..+..|.||||+|+..|+.++|++|++
T Consensus 86 ~~~~~~~~v~~Ll~~~~~~~~---------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 138 (236)
T 1ikn_D 86 CEQGCLASVGVLTQSCTTPHL---------------------------HSILKATNYNGHTCLHLASIHGYLGIVELLVS 138 (236)
T ss_dssp HHHTCHHHHHHHHHSTTTTSS---------------------------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcccchhH---------------------------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 888888888888876543110 11245667778888888888888888888888
Q ss_pred cCCCcccccc-cCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335 200 LHANVSAVTF-HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278 (513)
Q Consensus 200 ~Gadvn~~~~-~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~ 278 (513)
+|++++..+. . |.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|.+.+.
T Consensus 139 ~g~~~~~~~~~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga 208 (236)
T 1ikn_D 139 LGADVNAQEPCN----------GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 208 (236)
T ss_dssp HTCCTTCCCTTT----------CCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred cCCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcch
Confidence 8888888775 4 8888888888888888888888888888888888888888888888888888877666
Q ss_pred CCC
Q 010335 279 AVM 281 (513)
Q Consensus 279 ~~~ 281 (513)
...
T Consensus 209 ~~~ 211 (236)
T 1ikn_D 209 ENL 211 (236)
T ss_dssp GGG
T ss_pred hhh
Confidence 543
No 36
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.2e-35 Score=284.99 Aligned_cols=210 Identities=25% Similarity=0.259 Sum_probs=182.6
Q ss_pred CCcHHHHHHHHcCCHHHHHHHHhcCCC----CccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHH
Q 010335 9 ASGERLVSAARDGDFVEAKMLLDCNPC----LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQ 84 (513)
Q Consensus 9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~----~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~ 84 (513)
.+.++||.|+..|+.+++++|++.+.. ++... ..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+
T Consensus 7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 84 (236)
T 1ikn_D 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN--NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 84 (236)
T ss_dssp CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCC--TTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHH
T ss_pred CCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccC--CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 456789999999999999999998763 44333 345999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCC------CcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchh
Q 010335 85 ACRYGHWEVVQTLLLFRCNV------TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSV 158 (513)
Q Consensus 85 A~~~g~~eiVk~LL~~ga~~------~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (513)
|+..|+.+++++|+++|+++ +..+ ..|.||||+|+..|+.+++++|++.+..
T Consensus 85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------------------- 142 (236)
T 1ikn_D 85 ACEQGCLASVGVLTQSCTTPHLHSILKATN-YNGHTCLHLASIHGYLGIVELLVSLGAD--------------------- 142 (236)
T ss_dssp HHHHTCHHHHHHHHHSTTTTSSSCGGGCCC-TTCCCHHHHHHHTTCHHHHHHHHHHTCC---------------------
T ss_pred HHHcCCHHHHHHHHhcccchhHHHHhhccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------
Confidence 99999999999999999763 3333 4799999999999999999999987654
Q ss_pred hhhhchhHHHHhcccccC-CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHH
Q 010335 159 KSKCDQSALSKFVNKAAD-GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237 (513)
Q Consensus 159 ~~~~~~~~~~~~i~~~d~-~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eiv 237 (513)
++..+. .|.||||+|+..|+.++|++|+++|++++..+.. |.||||+|+..|+.+++
T Consensus 143 ------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~tpl~~A~~~~~~~~~ 200 (236)
T 1ikn_D 143 ------------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ----------GYSPYQLTWGRPSTRIQ 200 (236)
T ss_dssp ------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTT----------CCCGGGGCTTSSCHHHH
T ss_pred ------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCC----------CCCHHHHHHccCchHHH
Confidence 566676 8999999999999999999999999999999976 99999999999999999
Q ss_pred HHHHHCCCCCC--CcCCCCCcHHHHHHHc
Q 010335 238 QVLLSRGASRM--SLNCNGWLPLDVARMW 264 (513)
Q Consensus 238 k~LL~~Gad~~--~~d~~G~TpL~~A~~~ 264 (513)
++|+++|++.. ..+..|.||++.+...
T Consensus 201 ~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 201 QQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp HHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred HHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 99999999876 7788898887766543
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.8e-33 Score=266.87 Aligned_cols=195 Identities=24% Similarity=0.280 Sum_probs=180.9
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCChHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQTALMQAC 86 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Ga-dvn~~d~~g~TpLh~A~ 86 (513)
..+.++||.|++.|+.+++++|+++|.+++.....+ .||||+|+..|+.+++++|++++. +++..+..|.||||+|+
T Consensus 23 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 100 (223)
T 2f8y_A 23 RTGETALHLAARYSRSDAAKRLLEASADANIQDNMG--RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 100 (223)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred CCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence 456789999999999999999999999887655444 899999999999999999999987 89999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335 87 RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166 (513)
Q Consensus 87 ~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (513)
..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 101 ~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------------------- 150 (223)
T 2f8y_A 101 RLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNGAN----------------------------- 150 (223)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCC-----------------------------
T ss_pred HhCcHHHHHHHHHcCCCCcCcCC-CCCcHHHHHHHcCCHHHHHHHHHcCCC-----------------------------
Confidence 99999999999999999998885 899999999999999999999987654
Q ss_pred HHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246 (513)
Q Consensus 167 ~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad 246 (513)
++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..++.+++++|+++|+.
T Consensus 151 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 151 ----KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM----------DRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp ----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred ----CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccc----------CCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 5677889999999999999999999999999999999876 99999999999999999999999997
Q ss_pred CC
Q 010335 247 RM 248 (513)
Q Consensus 247 ~~ 248 (513)
..
T Consensus 217 ~~ 218 (223)
T 2f8y_A 217 RS 218 (223)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 38
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.5e-34 Score=295.55 Aligned_cols=222 Identities=23% Similarity=0.199 Sum_probs=184.7
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHH
Q 010335 41 TFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120 (513)
Q Consensus 41 ~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~ 120 (513)
.+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++. .+|.||||+|+
T Consensus 16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~g~t~L~~A~ 92 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL---WHGQKPIHLAV 92 (364)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC---BTTBCHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc---cCCCCHHHHHH
Confidence 344458999999999999999999999999999999999999999999999999999999996664 36999999999
Q ss_pred HcCCHHHHHHHHHc----cCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcC--CHHHH
Q 010335 121 VNGHVRCIRLVVAD----FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG--YFDCV 194 (513)
Q Consensus 121 ~~g~~~iv~~Ll~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g--~~eiv 194 (513)
..|+.+++++|++. +........ . .... ......++..+..|.||||+|+..| +.++|
T Consensus 93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~-----~---~~~~--------~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v 156 (364)
T 3ljn_A 93 MANKTDLVVALVEGAKERGQMPESLLN-----E---CDER--------EVNEIGSHVKHCKGQTALHWCVGLGPEYLEMI 156 (364)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCHHHHHT-----C---CCCC--------CEEEETTEEEEESCCCHHHHHHHSCGGGHHHH
T ss_pred HcCCHHHHHHHHHhccccCCCHHHHHh-----h---cchH--------hhhhhccccCCCCCCCHHHHHHHcCCchHHHH
Confidence 99999999999986 322110000 0 0000 0001124557889999999999999 99999
Q ss_pred HHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC-----CCCcCCCCCcHHHHHHHcCccch
Q 010335 195 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS-----RMSLNCNGWLPLDVARMWGRHWL 269 (513)
Q Consensus 195 ~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad-----~~~~d~~G~TpL~~A~~~g~~~i 269 (513)
++|+++|++++..+.. |.||||+|+..|+.++|++|+++|++ ++.+|..|+||||+|+..|+.++
T Consensus 157 ~~Ll~~ga~~~~~d~~----------g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 226 (364)
T 3ljn_A 157 KILVQLGASPTAKDKA----------DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV 226 (364)
T ss_dssp HHHHHHTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHH
T ss_pred HHHHHcCCCCcccCCC----------CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHH
Confidence 9999999999999876 99999999999999999999999999 99999999999999999999999
Q ss_pred hhhcCCCC-CCCCCCCCCCCccccchh
Q 010335 270 EPLLAPSS-DAVMPRFHPSNYLSLPLL 295 (513)
Q Consensus 270 v~lL~~~~-~~~~~~~~~~~~~~~~l~ 295 (513)
+++|++.+ +++.. +..+.+|++
T Consensus 227 v~~Ll~~gad~~~~----d~~g~tpL~ 249 (364)
T 3ljn_A 227 AMRFVEMGIDVNME----DNEHTVPLY 249 (364)
T ss_dssp HHHHHTTTCCTTCC----CTTSCCHHH
T ss_pred HHHHHHcCCCCCCC----CCCCCCHHH
Confidence 98887754 33332 556667644
No 39
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3e-34 Score=284.65 Aligned_cols=243 Identities=23% Similarity=0.245 Sum_probs=199.0
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccc-------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 15 VSAARDGDFVEAKMLLDCNPCLAKYS-------TFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 15 ~~Aa~~G~~e~vk~LL~~~~~~~~~~-------~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
+.+++.|..+.++.++.....+.... ....+.||||+|+..|++++|++|+++|+++|..|..|.||||+|+.
T Consensus 3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 82 (299)
T 1s70_B 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACI 82 (299)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 35788889999999998765543211 11234799999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335 88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (513)
.|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 83 ~g~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~------------------------------ 131 (299)
T 1s70_B 83 DDNVDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDIAEYLISQGAH------------------------------ 131 (299)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCC------------------------------
T ss_pred cCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCC------------------------------
Confidence 9999999999999999998886 899999999999999999999987654
Q ss_pred HHhcccccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccC----------------CccccccCCCCchhHHHhh
Q 010335 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHY----------------GTSMDLIGAGSTPLHFAAC 230 (513)
Q Consensus 168 ~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~-~Gadvn~~~~~~----------------~~~~~~~~~G~TpLh~Aa~ 230 (513)
++..+..|.||||+|+..++.+++++|+. .|.+++..+... .........|.||||+|+.
T Consensus 132 ---~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~ 208 (299)
T 1s70_B 132 ---VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208 (299)
T ss_dssp ---TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHH
T ss_pred ---CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHH
Confidence 56677889999999999999999998775 466654321100 0000011249999999999
Q ss_pred CCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC-CCCCCCCCCCCccccchh
Q 010335 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS-DAVMPRFHPSNYLSLPLL 295 (513)
Q Consensus 231 ~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~-~~~~~~~~~~~~~~~~l~ 295 (513)
.|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++.+ +.+.. +..+.+|+.
T Consensus 209 ~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~----d~~g~t~l~ 270 (299)
T 1s70_B 209 KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV----NKVGQTAFD 270 (299)
T ss_dssp HTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCTTT
T ss_pred CCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCc----CCCCCCHHH
Confidence 99999999999999999999999999999999999999998887754 33433 445555543
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5.5e-34 Score=272.29 Aligned_cols=196 Identities=25% Similarity=0.280 Sum_probs=174.7
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhc-CCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-----CCCCCCCChHHH
Q 010335 10 SGERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADV-----NSRNYCGQTALM 83 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~-~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadv-----n~~d~~g~TpLh 83 (513)
+.++||.|++.|+.+++++|++. |.+++..+.. |.||||+|+..|+.++|++|+++|+++ +..|..|.||||
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM--GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCC--CCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 46789999999999999999998 8777665544 499999999999999999999999987 777889999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCcccC------------CCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhccc
Q 010335 84 QACRYGHWEVVQTLLLFRCNVTRADY------------LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGD 151 (513)
Q Consensus 84 ~A~~~g~~eiVk~LL~~ga~~~~~~~------------~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~ 151 (513)
+|+..|+.++|++|+++|++++..+. ..|.||||+|+..|+.+++++|++.+.+
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------------- 146 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-------------- 146 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC--------------
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC--------------
Confidence 99999999999999999999987653 2699999999999999999999987654
Q ss_pred CCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHH----HHHHHcCCCc------ccccccCCccccccCCC
Q 010335 152 RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV----QLLLDLHANV------SAVTFHYGTSMDLIGAG 221 (513)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv----~~Ll~~Gadv------n~~~~~~~~~~~~~~~G 221 (513)
++..|..|+||||+|+..|+.+++ ++|+++|+++ +..+.. |
T Consensus 147 -------------------~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~----------g 197 (232)
T 2rfa_A 147 -------------------IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ----------G 197 (232)
T ss_dssp -------------------TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTT----------S
T ss_pred -------------------CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCC----------C
Confidence 677889999999999999999988 9999999988 455654 9
Q ss_pred CchhHHHhhCCCHHHHHHHHHCCCCCCCc
Q 010335 222 STPLHFAACGGNLKCCQVLLSRGASRMSL 250 (513)
Q Consensus 222 ~TpLh~Aa~~g~~eivk~LL~~Gad~~~~ 250 (513)
.||||+|+..|+.+++++|+++|++....
T Consensus 198 ~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~ 226 (232)
T 2rfa_A 198 LTPFKLAGVEGNIVMFQHLMQKRKHIAAA 226 (232)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHcCCHHHHHHHHhcCccchhh
Confidence 99999999999999999999998876544
No 41
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2.4e-33 Score=261.60 Aligned_cols=191 Identities=26% Similarity=0.269 Sum_probs=173.5
Q ss_pred CCcHHHHHHHHcCCHHHHHHHHhcCC-CCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 9 ASGERLVSAARDGDFVEAKMLLDCNP-CLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~-~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
.+.++|+.|+..|+.+.+++|++.+. +++..... |.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTE--GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA 81 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 45688999999999999999999887 65554443 4899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHH-hcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335 88 YGHWEVVQTLL-LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166 (513)
Q Consensus 88 ~g~~eiVk~LL-~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (513)
.|+.+++++|+ ..+++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------------------- 131 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNR-YGGNALIPAAEKGHIDNVKLLLEDGRE----------------------------- 131 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCT-TSCCSHHHHHHTTCHHHHHHHHHHCCC-----------------------------
T ss_pred cCCHHHHHHHHhccCcccccccC-CCCcHHHHHHHcCCHHHHHHHHHcCCC-----------------------------
Confidence 99999999999 55668887775 899999999999999999999987622
Q ss_pred HHHhcccccCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHH
Q 010335 167 LSKFVNKAADGGITALHMAALNGY-----FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 241 (513)
Q Consensus 167 ~~~~i~~~d~~G~TpLh~Aa~~g~-----~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL 241 (513)
.++..+..|.||||+|+..++ .+++++|+++|++++..+.. |.||||+|+..|+.+++++|+
T Consensus 132 ---~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~~~~~~~Ll 198 (201)
T 3hra_A 132 ---DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNS----------GRTAMDYANQKGYTEISKILA 198 (201)
T ss_dssp ---CTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHH
T ss_pred ---CcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCC----------CCCHHHHHHHcCCHhHHHHHH
Confidence 167788899999999999998 99999999999999999976 999999999999999999999
Q ss_pred HCC
Q 010335 242 SRG 244 (513)
Q Consensus 242 ~~G 244 (513)
++|
T Consensus 199 ~~G 201 (201)
T 3hra_A 199 QYN 201 (201)
T ss_dssp TCC
T ss_pred hcC
Confidence 987
No 42
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=9.8e-34 Score=270.17 Aligned_cols=194 Identities=28% Similarity=0.274 Sum_probs=180.1
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
..+.++||.|+..|+.+++++|++.|.+++.....+ .||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 38 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 115 (231)
T 3aji_A 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG--WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115 (231)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCC--CCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 456789999999999999999999998887655444 899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335 88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (513)
.|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 116 ~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------ 164 (231)
T 3aji_A 116 KNRHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFYKAS------------------------------ 164 (231)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCC------------------------------
T ss_pred cCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhcCCC------------------------------
Confidence 9999999999999999998885 899999999999999999999987653
Q ss_pred HHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCC
Q 010335 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 247 (513)
Q Consensus 168 ~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~ 247 (513)
++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..++.+++++|+++|+++
T Consensus 165 ---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 165 ---TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE----------EKTPLQVAKGGLGLILKRLAEGEEASM 231 (231)
T ss_dssp ---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT----------SCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred ---ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHhhHHHHHHHHHccccccC
Confidence 5677889999999999999999999999999999999876 999999999999999999999998763
No 43
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.2e-33 Score=258.10 Aligned_cols=159 Identities=38% Similarity=0.477 Sum_probs=128.4
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHH
Q 010335 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR 126 (513)
Q Consensus 47 TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~ 126 (513)
++|+.||..|+.++|++||++|+|+|.+|..|.||||+|+..++.+++++|+++|++++..+. .|+||||+|+..|+.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~-~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhcc-CCCCHHHHHHHcCCHH
Confidence 568888888888888888888888888888888888888888888888888888888887775 7888888888888888
Q ss_pred HHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc
Q 010335 127 CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 206 (513)
Q Consensus 127 iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~ 206 (513)
++++|++.+.+ ++.+|..|+||||+|+..|+.++|++|+++|++++.
T Consensus 85 ~v~~Ll~~gad---------------------------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 131 (169)
T 4gpm_A 85 VVKLLISKGAD---------------------------------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT 131 (169)
T ss_dssp HHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHCcCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 88888876653 566777888888888888888889999999999888
Q ss_pred ccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335 207 VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 249 (513)
Q Consensus 207 ~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~ 249 (513)
.+.. |.||||+|+..|+.+++++|+++||+++.
T Consensus 132 ~d~~----------G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 132 SDSD----------GRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CCTT----------SCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred cCCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 8866 88999999999999999999999988764
No 44
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.4e-34 Score=281.07 Aligned_cols=204 Identities=23% Similarity=0.229 Sum_probs=173.7
Q ss_pred CCcHHHHHHHcCCHH----HHHHHHHCCCCCCC----CCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCCccc-----
Q 010335 45 LNSPLHFAAAKGHNE----IVALLLENGADVNS----RNYCGQTALMQACRY---GHWEVVQTLLLFRCNVTRAD----- 108 (513)
Q Consensus 45 g~TpLh~Aa~~g~~e----ivk~LL~~Gadvn~----~d~~g~TpLh~A~~~---g~~eiVk~LL~~ga~~~~~~----- 108 (513)
|+||||+|+..|+.+ ++++|++.|++++. +|..|.||||+|+.. |+.++|++|+++|++++..+
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 489999999999997 66788889999998 899999999999999 99999999999998876332
Q ss_pred -----CCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHH
Q 010335 109 -----YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 183 (513)
Q Consensus 109 -----~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh 183 (513)
+..|.||||+|+..|+.+++++|++.+........... +....+..+..|.||||
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~--------------------~~~~~~~~~~~g~tpL~ 141 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF--------------------FQKHQGTCFYFGELPLS 141 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG--------------------GSCCSSSCCCSCSSHHH
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccc--------------------ccccccccccCCCCHHH
Confidence 13799999999999999999999998765322111100 00012233445999999
Q ss_pred HHHHcCCHHHHHHHHH---cCCCcccccccCCccccccCCCCchhHHHhh--CCCHH-------HHHHHHHCCCCC----
Q 010335 184 MAALNGYFDCVQLLLD---LHANVSAVTFHYGTSMDLIGAGSTPLHFAAC--GGNLK-------CCQVLLSRGASR---- 247 (513)
Q Consensus 184 ~Aa~~g~~eiv~~Ll~---~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~--~g~~e-------ivk~LL~~Gad~---- 247 (513)
+|+..|+.++|++|++ +|++++..+.. |.||||+|+. .++.+ ++++|+++|+++
T Consensus 142 ~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~----------g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~ 211 (256)
T 2etb_A 142 LAACTKQWDVVTYLLENPHQPASLEATDSL----------GNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV 211 (256)
T ss_dssp HHHHTTCHHHHHHHHHCSSCCCCTTCCCTT----------SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHcCCHHHHHHHHhccccCCCcCccCCC----------CCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccc
Confidence 9999999999999999 99999999977 9999999999 88988 999999999999
Q ss_pred ---CCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335 248 ---MSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278 (513)
Q Consensus 248 ---~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~ 278 (513)
+.+|..|+||||+|+..|+.+++++|++++.
T Consensus 212 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 212 QLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 8999999999999999999999999987653
No 45
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=277.31 Aligned_cols=204 Identities=24% Similarity=0.252 Sum_probs=157.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCC--------CCCCCCCCChHHHHHHHcCCH-HHHHHHHhcCCCCCcccCCCCCcHH
Q 010335 46 NSPLHFAAAKGHNEIVALLLENGAD--------VNSRNYCGQTALMQACRYGHW-EVVQTLLLFRCNVTRADYLSGRTAL 116 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~Gad--------vn~~d~~g~TpLh~A~~~g~~-eiVk~LL~~ga~~~~~~~~~G~TpL 116 (513)
.+||+.||..|++++|++||+.|++ ++..|..|.||||+|+..++. .++++|++.|++++..+. +|+|||
T Consensus 12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~-~G~TpL 90 (269)
T 4b93_B 12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ-DGSSPL 90 (269)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCT-TSCCHH
T ss_pred hhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC-CCCCHH
Confidence 6999999999999999999999875 466778899999999998875 489999999999999886 999999
Q ss_pred HHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHH
Q 010335 117 HFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQL 196 (513)
Q Consensus 117 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~ 196 (513)
|+|+..|+.+++++|++.+.. ++..+..|.||||+|+..++.+++++
T Consensus 91 h~A~~~g~~~~v~~Ll~~~a~---------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~ 137 (269)
T 4b93_B 91 HVAALHGRADLIPLLLKHGAN---------------------------------AGARNADQAVPLHLACQQGHFQVVKC 137 (269)
T ss_dssp HHHHHTTCTTHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHcCcHHHHHHHHhcCCC---------------------------------cCccCCCCCCccccccccChHHHHHH
Confidence 999999999999999987654 56677889999999999999999999
Q ss_pred HHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335 197 LLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS 276 (513)
Q Consensus 197 Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~ 276 (513)
|++.|++++..+.. |.||||+|+..|+.++|++|+++|++++.++..|+||||+|+..|+.+++++|++.
T Consensus 138 Ll~~g~~~n~~d~~----------g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 207 (269)
T 4b93_B 138 LLDSNAKPNKKDLS----------GNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLH 207 (269)
T ss_dssp HHHTTCCSCCCCTT----------CCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHCCCCCCCCCCC----------CCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 99999999999876 99999999999999999999999999999999999999999999999999888765
Q ss_pred C-CCCCCCCCCCCccccchhHH
Q 010335 277 S-DAVMPRFHPSNYLSLPLLSV 297 (513)
Q Consensus 277 ~-~~~~~~~~~~~~~~~~l~~~ 297 (513)
+ +++.. +..+.||+..+
T Consensus 208 Gad~~~~----d~~G~TpL~~A 225 (269)
T 4b93_B 208 GASVQVL----NKRQRTAVDCA 225 (269)
T ss_dssp TCCSCCC----CTTSCCSGGGS
T ss_pred CCCCCCc----CCCCCCHHHHH
Confidence 4 44433 56677776644
No 46
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=7.2e-34 Score=278.87 Aligned_cols=209 Identities=22% Similarity=0.212 Sum_probs=169.6
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhc----CCCCccc--cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCC-------
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDC----NPCLAKY--STFGGLNSPLHFAAAK---GHNEIVALLLENGADV------- 71 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~----~~~~~~~--~~~~~g~TpLh~Aa~~---g~~eivk~LL~~Gadv------- 71 (513)
..+.++||.|++.|++++|+.|++. +.++... ..+..|.||||+|+.. |+.++|++|++.|+++
T Consensus 11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i 90 (273)
T 2pnn_A 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV 90 (273)
T ss_dssp CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence 4567899999999999999999974 4444321 2344569999999987 9999999999998653
Q ss_pred CC----CCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccC-------------CCCCcHHHHHHHcCCHHHHHHHHH-
Q 010335 72 NS----RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADY-------------LSGRTALHFAAVNGHVRCIRLVVA- 133 (513)
Q Consensus 72 n~----~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~-------------~~G~TpLh~A~~~g~~~iv~~Ll~- 133 (513)
+. .|..|.||||+|+..|+.++|++|+++|++++..+. ..|.||||+|+..|+.+++++|++
T Consensus 91 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 170 (273)
T 2pnn_A 91 NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170 (273)
T ss_dssp TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred hcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 22 567899999999999999999999999999998874 269999999999999999999998
Q ss_pred --ccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCC---------HHHHHHHHHcCC
Q 010335 134 --DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY---------FDCVQLLLDLHA 202 (513)
Q Consensus 134 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~---------~eiv~~Ll~~Ga 202 (513)
.+.. ++.+|..|+||||+|+..|+ .+++++|+++|+
T Consensus 171 ~~~gad---------------------------------~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga 217 (273)
T 2pnn_A 171 SWQPAD---------------------------------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217 (273)
T ss_dssp SSCCCC---------------------------------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCC---------------------------------ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh
Confidence 5543 67788999999999999998 899999999999
Q ss_pred Cccc-------ccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCC-CCCCcCCCCCcHHH
Q 010335 203 NVSA-------VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA-SRMSLNCNGWLPLD 259 (513)
Q Consensus 203 dvn~-------~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Ga-d~~~~d~~G~TpL~ 259 (513)
+++. .+.. |.||||+|+..|+.++|++|+++|| |+......+++|-+
T Consensus 218 ~~n~~~~~~~~~d~~----------g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 218 KLHPTLKLEEITNRK----------GLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HHCTTCCGGGCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred hcccccccccccCCC----------CCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 9974 5654 9999999999999999999999999 88887777776643
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.5e-32 Score=250.81 Aligned_cols=161 Identities=36% Similarity=0.518 Sum_probs=145.7
Q ss_pred cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH 90 (513)
Q Consensus 11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~ 90 (513)
+++|+.|++.|++++|++||++|++++..+..+ +||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g--~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence 578999999999999999999999988765544 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHh
Q 010335 91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 170 (513)
Q Consensus 91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (513)
.++|++|+++|++++..+. +|+||||+|+..|+.+++++|++.+.+
T Consensus 83 ~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~gad--------------------------------- 128 (169)
T 4gpm_A 83 KEVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKGAD--------------------------------- 128 (169)
T ss_dssp HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------
T ss_pred HHHHHHHHHCcCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------
Confidence 9999999999999999886 999999999999999999999987754
Q ss_pred cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 010335 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 207 (513)
Q Consensus 171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~ 207 (513)
++.+|..|+||||+|+.+|+.+++++|+++||+++..
T Consensus 129 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~~ 165 (169)
T 4gpm_A 129 VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEHH 165 (169)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-------
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCCC
Confidence 6778889999999999999999999999999998753
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2e-33 Score=272.86 Aligned_cols=196 Identities=21% Similarity=0.191 Sum_probs=172.0
Q ss_pred CcHHHHHHHHcCCHH----HHHHHHhcCCCCccc--cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCC------
Q 010335 10 SGERLVSAARDGDFV----EAKMLLDCNPCLAKY--STFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSR------ 74 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e----~vk~LL~~~~~~~~~--~~~~~g~TpLh~Aa~~---g~~eivk~LL~~Gadvn~~------ 74 (513)
+.++||.|++.|+.+ ++++|++.|.+++.. ..+..|.||||+|+.. |+.++|++|++.|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 468999999999997 667777789888750 1233449999999999 9999999999999887643
Q ss_pred -----CCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCC------------CCCcHHHHHHHcCCHHHHHHHHH---c
Q 010335 75 -----NYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYL------------SGRTALHFAAVNGHVRCIRLVVA---D 134 (513)
Q Consensus 75 -----d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~------------~G~TpLh~A~~~g~~~iv~~Ll~---~ 134 (513)
|..|.||||+|+..|+.++|++|+++|++++..+.. .|.||||+|+..|+.+++++|++ .
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 478999999999999999999999999999988752 29999999999999999999998 5
Q ss_pred cCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCc-
Q 010335 135 FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL--NGYFD-------CVQLLLDLHANV- 204 (513)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~--~g~~e-------iv~~Ll~~Gadv- 204 (513)
+.. ++.+|..|+||||+|+. .++.+ ++++|+++|+++
T Consensus 162 ga~---------------------------------~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~ 208 (256)
T 2etb_A 162 PAS---------------------------------LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 208 (256)
T ss_dssp CCC---------------------------------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCC---------------------------------cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcc
Confidence 543 67788999999999999 88888 999999999999
Q ss_pred ------ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCC
Q 010335 205 ------SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 248 (513)
Q Consensus 205 ------n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~ 248 (513)
+..+.. |.||||+|+..|+.+++++|+++|++..
T Consensus 209 ~~~~~~~~~d~~----------g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 209 PTVQLEEISNHQ----------GLTPLKLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp TTCCGGGCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccccccccCCC----------CCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence 777766 9999999999999999999999987643
No 49
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.2e-32 Score=259.20 Aligned_cols=211 Identities=20% Similarity=0.137 Sum_probs=186.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
+.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.++|++|+++|++++......|.||||+|+..|+
T Consensus 9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 9 STWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp GGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred cchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence 48999999999999999999999999999999999999999999999999999999999988776679999999999999
Q ss_pred HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335 125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 204 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv 204 (513)
.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 89 ~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~ 135 (240)
T 3eu9_A 89 LSMVVQLMKYGAD---------------------------------PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135 (240)
T ss_dssp HHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHcCCC---------------------------------CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc
Confidence 9999999987653 5566788999999999999999999999999999
Q ss_pred ccccccCCccccccCCCCchhHHHhhCCC-HHHHHHHHHCCCCCCCcCC-CCCcHHHHHHHcCccchhhhcCCCCC-CCC
Q 010335 205 SAVTFHYGTSMDLIGAGSTPLHFAACGGN-LKCCQVLLSRGASRMSLNC-NGWLPLDVARMWGRHWLEPLLAPSSD-AVM 281 (513)
Q Consensus 205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~-~eivk~LL~~Gad~~~~d~-~G~TpL~~A~~~g~~~iv~lL~~~~~-~~~ 281 (513)
+..+.. |.||||+|+..++ .+++++|++.|++++..+. .|+||||+|+..|+.+++++|.+.+. .+.
T Consensus 136 ~~~~~~----------g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 205 (240)
T 3eu9_A 136 DMMDQN----------GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA 205 (240)
T ss_dssp TCCCTT----------SCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred cccCCC----------CCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 998876 9999999996665 8999999999999999987 99999999999999999988877643 222
Q ss_pred CCCCCCCccccchhHHHHHHHHhCC
Q 010335 282 PRFHPSNYLSLPLLSVLNVARECGL 306 (513)
Q Consensus 282 ~~~~~~~~~~~~l~~~l~~a~e~g~ 306 (513)
. +..+.+| +++|.+.|.
T Consensus 206 ~----~~~g~t~----l~~A~~~~~ 222 (240)
T 3eu9_A 206 Q----NIKGESA----LDLAKQRKN 222 (240)
T ss_dssp B----CTTSCBH----HHHHHHTTC
T ss_pred c----CCCCCCH----HHHHHHcCc
Confidence 2 4455566 445555443
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.98 E-value=3.2e-33 Score=274.23 Aligned_cols=208 Identities=20% Similarity=0.132 Sum_probs=173.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHH----CCCCCC----CCCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCC------
Q 010335 43 GGLNSPLHFAAAKGHNEIVALLLE----NGADVN----SRNYCGQTALMQACRY---GHWEVVQTLLLFRCNVT------ 105 (513)
Q Consensus 43 ~~g~TpLh~Aa~~g~~eivk~LL~----~Gadvn----~~d~~g~TpLh~A~~~---g~~eiVk~LL~~ga~~~------ 105 (513)
..|.||||+|+..|+.++|++|++ .+++++ ..|..|.||||+|+.+ |+.++|++|+++|+++.
T Consensus 11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i 90 (273)
T 2pnn_A 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV 90 (273)
T ss_dssp CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence 345899999999999999988886 677776 4588999999999987 99999999999987532
Q ss_pred -c----ccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCc
Q 010335 106 -R----ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180 (513)
Q Consensus 106 -~----~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~T 180 (513)
. .+ ..|.||||+|+..|+.+++++|++.+............. ....+..+..|.|
T Consensus 91 ~~~~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~-------------------~~~~~~~~~~g~t 150 (273)
T 2pnn_A 91 NASYTDSY-YKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK-------------------KTKGRPGFYFGEL 150 (273)
T ss_dssp TCCCCSTT-TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGS-------------------SCSSSCCCCSCBS
T ss_pred hccccccc-CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccc-------------------cccccccccCCCC
Confidence 1 22 379999999999999999999999876533221111000 0013344558999
Q ss_pred HHHHHHHcCCHHHHHHHHH---cCCCcccccccCCccccccCCCCchhHHHhhCCC---------HHHHHHHHHCCCCCC
Q 010335 181 ALHMAALNGYFDCVQLLLD---LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---------LKCCQVLLSRGASRM 248 (513)
Q Consensus 181 pLh~Aa~~g~~eiv~~Ll~---~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~---------~eivk~LL~~Gad~~ 248 (513)
|||+|+..|+.++|++|++ +|++++..+.. |.||||+|+..|+ .+++++|+++|++++
T Consensus 151 pL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~----------g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n 220 (273)
T 2pnn_A 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSV----------GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH 220 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT----------SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHhcccCCCCceeeCCC----------CCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999 99999999977 9999999999988 899999999999997
Q ss_pred -------CcCCCCCcHHHHHHHcCccchhhhcCCCCCCC
Q 010335 249 -------SLNCNGWLPLDVARMWGRHWLEPLLAPSSDAV 280 (513)
Q Consensus 249 -------~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~~ 280 (513)
.+|..|+||||+|+..|+.+++++|++.+..+
T Consensus 221 ~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~d 259 (273)
T 2pnn_A 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHE 259 (273)
T ss_dssp TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-
T ss_pred cccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCC
Confidence 48999999999999999999999998876643
No 51
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.98 E-value=3.7e-33 Score=281.91 Aligned_cols=219 Identities=17% Similarity=0.176 Sum_probs=167.4
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCcc-ccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC-
Q 010335 13 RLVSAARDGDFVEAKMLLDCNPCLAK-YSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH- 90 (513)
Q Consensus 13 ~L~~Aa~~G~~e~vk~LL~~~~~~~~-~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~- 90 (513)
.++.|+..+..++++.|++.|.+++. ....+ .||||+|+..|+.++|++||++|++++.+|..|.||||+|+..|+
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g--~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~ 177 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHG--NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 177 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCCCSCSCCSTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHH
T ss_pred hhHHHHHhhHHHHHHHHHhcCCCcccccCCCC--CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccc
Confidence 45778888889999999999999887 44444 999999999999999999999999999999999999999999999
Q ss_pred --HHHHHHHHhcC-CCCCcccCCCCCcHHHHHHH----cCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhc
Q 010335 91 --WEVVQTLLLFR-CNVTRADYLSGRTALHFAAV----NGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163 (513)
Q Consensus 91 --~eiVk~LL~~g-a~~~~~~~~~G~TpLh~A~~----~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (513)
.++++.|++++ ++++..+. .|+||||+|+. .|+.+++++|++.+........ .. .+. ..
T Consensus 178 ~~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~--------~~---~i~--~~ 243 (327)
T 1sw6_A 178 YDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ--------NR---PIQ--SG 243 (327)
T ss_dssp HHTTCHHHHHHHHGGGGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG--------GC---CEE--EC
T ss_pred ccHHHHHHHHHhhhccccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc--------ch---HHH--hh
Confidence 78888888886 67887775 99999999999 8999999999975421000000 00 000 00
Q ss_pred hhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243 (513)
Q Consensus 164 ~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~ 243 (513)
.......++..+..|.||||+|+. +++|+++ +++..+.. |+||||+|+..|+.++|++|+++
T Consensus 244 ~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~----------G~TpLh~A~~~g~~~~v~~Ll~~ 305 (327)
T 1sw6_A 244 TNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSN----------GDTCLNIAARLGNISIVDALLDY 305 (327)
T ss_dssp ----------------CHHHHHCS------HHHHHHH--TTTCCCTT----------SCCHHHHHHHHCCHHHHHHHHHT
T ss_pred hhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHHc
Confidence 011133477788999999999985 8999998 57777766 99999999999999999999999
Q ss_pred CCCCCCcCCCCCcHHHHHHHcC
Q 010335 244 GASRMSLNCNGWLPLDVARMWG 265 (513)
Q Consensus 244 Gad~~~~d~~G~TpL~~A~~~g 265 (513)
|++++.+|.+|+||||+|++.|
T Consensus 306 Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 306 GADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp TCCTTCCCTTSCCGGGGTCC--
T ss_pred CCCCcccCCCCCCHHHHHHhcC
Confidence 9999999999999999998654
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=7.2e-33 Score=269.42 Aligned_cols=196 Identities=21% Similarity=0.188 Sum_probs=169.9
Q ss_pred CcHHHHHHHHcCCHHHHHHHHh----cCCCCccccC--CCCCCcHHHHHH---HcCCHHHHHHHHHCCCC----------
Q 010335 10 SGERLVSAARDGDFVEAKMLLD----CNPCLAKYST--FGGLNSPLHFAA---AKGHNEIVALLLENGAD---------- 70 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~----~~~~~~~~~~--~~~g~TpLh~Aa---~~g~~eivk~LL~~Gad---------- 70 (513)
+.++||.|++.|+.+.++.|++ .+.+++.... +..|.||||+|+ ..|+.++|++|++.|++
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 84 (260)
T 3jxi_A 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS 84 (260)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence 4688999999999996555555 8888765442 244699999999 67999999999998754
Q ss_pred -CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccC-------------CCCCcHHHHHHHcCCHHHHHHHHH---
Q 010335 71 -VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADY-------------LSGRTALHFAAVNGHVRCIRLVVA--- 133 (513)
Q Consensus 71 -vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~-------------~~G~TpLh~A~~~g~~~iv~~Ll~--- 133 (513)
++..|..|.||||+|+..|+.++|++|+++|++++..+. ..|.||||+|+..|+.+++++|++
T Consensus 85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 164 (260)
T 3jxi_A 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164 (260)
T ss_dssp CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 455666899999999999999999999999999998873 379999999999999999999998
Q ss_pred ccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCc
Q 010335 134 DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY---------FDCVQLLLDLHANV 204 (513)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~---------~eiv~~Ll~~Gadv 204 (513)
.+.. ++.+|..|+||||+|+..++ .+++++|+++|+++
T Consensus 165 ~ga~---------------------------------~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 165 KQAD---------------------------------LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp CCCC---------------------------------TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC---------------------------------CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence 5543 67788999999999999888 79999999999999
Q ss_pred -------ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCC
Q 010335 205 -------SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 248 (513)
Q Consensus 205 -------n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~ 248 (513)
+..+.. |.||||+|+..|+.++|++|+++|++..
T Consensus 212 ~~~~~~~~~~d~~----------g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 212 FPDTNLEALLNND----------GLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp CTTCCGGGCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccchhhcccCC----------CCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 556755 9999999999999999999999987653
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.8e-32 Score=266.61 Aligned_cols=204 Identities=21% Similarity=0.151 Sum_probs=168.5
Q ss_pred CcHHHHHHHcCCHHH----HHHHHHCCCCCCCCC----CCCChHHHHHH---HcCCHHHHHHHHhcCCCC----------
Q 010335 46 NSPLHFAAAKGHNEI----VALLLENGADVNSRN----YCGQTALMQAC---RYGHWEVVQTLLLFRCNV---------- 104 (513)
Q Consensus 46 ~TpLh~Aa~~g~~ei----vk~LL~~Gadvn~~d----~~g~TpLh~A~---~~g~~eiVk~LL~~ga~~---------- 104 (513)
+|+||.|+..|+.+. +++|++.|++++..+ ..|.||||+|+ ..|+.++|++|++.|+++
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 85 (260)
T 3jxi_A 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP 85 (260)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence 899999999999995 555555999999776 67999999999 679999999999988543
Q ss_pred -CcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHH
Q 010335 105 -TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 183 (513)
Q Consensus 105 -~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh 183 (513)
...+ ..|+||||+|+..|+.+++++|++.+............. .......+..|.||||
T Consensus 86 ~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~-------------------~~~~~~~~~~g~tpL~ 145 (260)
T 3jxi_A 86 FRDVY-YRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ-------------------PKDEGGYFYFGELPLS 145 (260)
T ss_dssp BCCSS-EESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCS-------------------SSCCCCSCCSCSSHHH
T ss_pred ccccc-cCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccC-------------------cccccccccCCCCHHH
Confidence 2233 279999999999999999999999876533221100000 0011223367999999
Q ss_pred HHHHcCCHHHHHHHHH---cCCCcccccccCCccccccCCCCchhHHHhhCCC---------HHHHHHHHHCCCCC----
Q 010335 184 MAALNGYFDCVQLLLD---LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---------LKCCQVLLSRGASR---- 247 (513)
Q Consensus 184 ~Aa~~g~~eiv~~Ll~---~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~---------~eivk~LL~~Gad~---- 247 (513)
+|+..|+.++|++|++ +|++++..+.. |.||||+|+..++ .+++++|+++|+++
T Consensus 146 ~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~----------g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~ 215 (260)
T 3jxi_A 146 LAACTNQPHIVHYLTENGHKQADLRRQDSR----------GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215 (260)
T ss_dssp HHHHTTCHHHHHHHHHCSSCCCCTTCCCTT----------SCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHcCCHHHHHHHHhccccCCCCcccCCC----------CCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccccc
Confidence 9999999999999999 99999999977 9999999998877 79999999999999
Q ss_pred ---CCcCCCCCcHHHHHHHcCccchhhhcCCCCCC
Q 010335 248 ---MSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA 279 (513)
Q Consensus 248 ---~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~ 279 (513)
+.+|.+|+||||+|+..|+.+++++|++++..
T Consensus 216 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 67999999999999999999999998876543
No 54
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=4.1e-32 Score=267.68 Aligned_cols=189 Identities=24% Similarity=0.224 Sum_probs=174.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCC-CCCcccCCCCCcHHHHHH--
Q 010335 46 NSPLHFAAAKGHNEIVALLLENGAD--VNSRNYCGQTALMQACRYGHWEVVQTLLLFRC-NVTRADYLSGRTALHFAA-- 120 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~Gad--vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga-~~~~~~~~~G~TpLh~A~-- 120 (513)
.+++|.|+..|+++.++.|++.+.+ +|.+|..|.||||+|+..|+.++|++|++.|+ +++..+. .|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~g~tpL~~a~~~ 155 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNR-AGYSPIMLTALA 155 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHGGGC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC-CCCCHHHHHHHH
Confidence 5788999999999999999988766 89999999999999999999999999999998 8887775 9999999999
Q ss_pred ---HcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHH
Q 010335 121 ---VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 197 (513)
Q Consensus 121 ---~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~L 197 (513)
..++.+++++|++.+.. .+..+..|+||||+|+.+|+.++|++|
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~tpLh~A~~~g~~~~v~~L 202 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNI---------------------------------NAKASQAGQTALMLAVSHGRVDVVKAL 202 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCT---------------------------------TCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCC---------------------------------ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 66899999999977643 455677899999999999999999999
Q ss_pred HHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHH-CCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335 198 LDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS 276 (513)
Q Consensus 198 l~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~ 276 (513)
+++|++++..|.. |.||||+|+..|+.++|++|++ +|++++.+|.+|+||||+|+..|+.+++++|.+.
T Consensus 203 l~~gad~n~~d~~----------G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 203 LACEADVNVQDDD----------GSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp HHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCCCCCCCCCC----------CCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 9999999999977 9999999999999999999999 8999999999999999999999999999999876
Q ss_pred CC
Q 010335 277 SD 278 (513)
Q Consensus 277 ~~ 278 (513)
..
T Consensus 273 ~~ 274 (276)
T 4hbd_A 273 MN 274 (276)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=3.1e-31 Score=241.54 Aligned_cols=168 Identities=26% Similarity=0.261 Sum_probs=142.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 46 NSPLHFAAAKGHNEIVALLLENGAD-VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~Gad-vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
.||||+|+..|+++++++|++.|.+ ++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK-ERESALSLASTGGY 81 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTC
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcc-cCCCHHHHHHHCCC
Confidence 6889999999999999999988877 788888899999999999999999999999998888775 88999999999999
Q ss_pred HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335 125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 204 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv 204 (513)
.+++++|++.+.. ++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus 82 ~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 128 (172)
T 3v30_A 82 TDIVGLLLERDVD---------------------------------INIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128 (172)
T ss_dssp HHHHHHHHTTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 9999999876543 5667788999999999999999999999999999
Q ss_pred ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcH
Q 010335 205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 257 (513)
Q Consensus 205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~Tp 257 (513)
+..+.. |.||||+|+..|+.+++++|+++|+++..++..|.||
T Consensus 129 ~~~~~~----------g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 129 TTEADS----------GYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp TCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred cccCCC----------CCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 988876 9999999999999999999999999998888888876
No 56
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=4.6e-31 Score=266.55 Aligned_cols=222 Identities=14% Similarity=0.056 Sum_probs=171.1
Q ss_pred CCHHHHHHHHhcCCCCccccC------------CCCC---CcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCChHHHH
Q 010335 21 GDFVEAKMLLDCNPCLAKYST------------FGGL---NSPLHFAAAKGHNEIVALLLENGADVNS-RNYCGQTALMQ 84 (513)
Q Consensus 21 G~~e~vk~LL~~~~~~~~~~~------------~~~g---~TpLh~Aa~~g~~eivk~LL~~Gadvn~-~d~~g~TpLh~ 84 (513)
|++++|++||++|.+...... .+.+ .+.+|+|+..+..+++++|++.|+++|. +|..|.||||+
T Consensus 58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~ 137 (327)
T 1sw6_A 58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW 137 (327)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHH
T ss_pred chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHH
Confidence 999999999999865432100 0011 2345888888899999999999999999 89999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC---HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhh
Q 010335 85 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH---VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161 (513)
Q Consensus 85 A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~---~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (513)
|+..|+.++|++|+++|++++..+. .|+||||+|+..|+ .++++.|++.+.
T Consensus 138 Aa~~g~~~~v~~Ll~~Gad~n~~d~-~g~TpLh~A~~~g~~~~~~~~~~ll~~~~------------------------- 191 (327)
T 1sw6_A 138 LTSIANLELVKHLVKHGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLY------------------------- 191 (327)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHG-------------------------
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhcccccHHHHHHHHHhhh-------------------------
Confidence 9999999999999999999998885 99999999999998 677777775321
Q ss_pred hchhHHHHhcccccCCCCcHHHHHHH----cCCHHHHHHHHHc--------------------CCCcccccccCCccccc
Q 010335 162 CDQSALSKFVNKAADGGITALHMAAL----NGYFDCVQLLLDL--------------------HANVSAVTFHYGTSMDL 217 (513)
Q Consensus 162 ~~~~~~~~~i~~~d~~G~TpLh~Aa~----~g~~eiv~~Ll~~--------------------Gadvn~~~~~~~~~~~~ 217 (513)
..++..|..|+||||+|+. .|+.+++++|++. |++++..+..
T Consensus 192 -------~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~------- 257 (327)
T 1sw6_A 192 -------PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE------- 257 (327)
T ss_dssp -------GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------------
T ss_pred -------ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc-------
Confidence 1267889999999999999 8999999999987 8888888866
Q ss_pred cCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC-CCCCCCCCCCCccccchhH
Q 010335 218 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS-DAVMPRFHPSNYLSLPLLS 296 (513)
Q Consensus 218 ~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~-~~~~~~~~~~~~~~~~l~~ 296 (513)
|.||||+|+. +++|+++ +++.+|.+|+||||+|+..|+.+++++|++.+ +++.. +..+.+|+..
T Consensus 258 ---g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~----d~~G~TpL~~ 322 (327)
T 1sw6_A 258 ---RKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA----NKSGLRPVDF 322 (327)
T ss_dssp -----CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC----CTTSCCGGGG
T ss_pred ---CCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc----CCCCCCHHHH
Confidence 9999999996 9999998 68899999999999999999999998887654 33333 6677788665
Q ss_pred H
Q 010335 297 V 297 (513)
Q Consensus 297 ~ 297 (513)
+
T Consensus 323 A 323 (327)
T 1sw6_A 323 G 323 (327)
T ss_dssp T
T ss_pred H
Confidence 4
No 57
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=2.5e-30 Score=234.39 Aligned_cols=160 Identities=25% Similarity=0.218 Sum_probs=138.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC
Q 010335 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG 123 (513)
Q Consensus 44 ~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g 123 (513)
.|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~ 80 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSKG 80 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcC
Confidence 458999999999999999999999999999999999999999999999999999999999888775 7888999998888
Q ss_pred CHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 010335 124 HVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 203 (513)
Q Consensus 124 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad 203 (513)
+.+++++|++.+.. ++..|..|.||||+|+..|+.+++++|+++|++
T Consensus 81 ~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 127 (167)
T 3v31_A 81 YTDIVKMLLDCGVD---------------------------------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127 (167)
T ss_dssp CHHHHHHHHHHTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHCCCC---------------------------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 88888888876543 566677888888888888888888888888888
Q ss_pred cccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCC
Q 010335 204 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 247 (513)
Q Consensus 204 vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~ 247 (513)
++..+.. |.||||+|+..|+.+++++|+++++++
T Consensus 128 ~~~~~~~----------g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 128 PTIETDS----------GYNSMDLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp TTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcCCC----------CCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 8888766 888888888888888888888876654
No 58
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=2.9e-30 Score=232.40 Aligned_cols=156 Identities=29% Similarity=0.355 Sum_probs=124.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCH
Q 010335 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV 125 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~ 125 (513)
.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++|++++..+. .|.||||+|+..|+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDR-TGFAVIHDAARAGFL 83 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCH
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCH
Confidence 578888888888888888888888888888888888888887 888888888888888877764 788888888888888
Q ss_pred HHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC-c
Q 010335 126 RCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN-V 204 (513)
Q Consensus 126 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad-v 204 (513)
+++++|++.+.. ++..|..|.||||+|+..|+.+++++|+++|++ +
T Consensus 84 ~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 130 (162)
T 1ihb_A 84 DTLQTLLEFQAD---------------------------------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130 (162)
T ss_dssp HHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT
T ss_pred HHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCC
Confidence 888888876543 556677788888888888888888888888887 4
Q ss_pred ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335 205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246 (513)
Q Consensus 205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad 246 (513)
+..+.. |.||||+|+..|+.+++++|+++|||
T Consensus 131 ~~~~~~----------g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 131 GHRNHK----------GDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp TCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CCcCCC----------CCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 666655 88888888888888888888888875
No 59
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=6.8e-33 Score=265.82 Aligned_cols=200 Identities=21% Similarity=0.142 Sum_probs=169.7
Q ss_pred HHHHHhcCCCCcccc-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 010335 26 AKMLLDCNPCLAKYS-TFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104 (513)
Q Consensus 26 vk~LL~~~~~~~~~~-~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~ 104 (513)
|+.||+++.+..... ....+.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..|+.++|++|+++|+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 577888887776443 3334589999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhccccc-CCCCcHHH
Q 010335 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALH 183 (513)
Q Consensus 105 ~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d-~~G~TpLh 183 (513)
+..+. .|.||||+|+..|+.+++++|++.+.. ++..+ ..|+||||
T Consensus 81 n~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~~~~~g~tpL~ 126 (229)
T 2vge_A 81 NSPDS-HGWTPLHCAASCNDTVICMALVQHGAA---------------------------------IFATTLSDGATAFE 126 (229)
T ss_dssp TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCC---------------------------------TTCCCSSTTCCTGG
T ss_pred CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------cccccCCCCCCHHH
Confidence 99886 899999999999999999999987654 45554 58999999
Q ss_pred HH--HHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC--CCCcCCCCCcHHH
Q 010335 184 MA--ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS--RMSLNCNGWLPLD 259 (513)
Q Consensus 184 ~A--a~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad--~~~~d~~G~TpL~ 259 (513)
+| +..|+.+++++|+++|++++..+.. |.|||+.++..+.. ++|+++|++ ++.+|.+|+||||
T Consensus 127 ~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~----------~~~~l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~ 193 (229)
T 2vge_A 127 KCDPYREGYADCATYLADVEQSMGLMNSG----------AVYALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWW 193 (229)
T ss_dssp GCCTTSTTHHHHHHHHHHHHHHTTTSGGG----------EEEESSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEE
T ss_pred HHHHHhcChHHHHHHHHHcCCCcccccCC----------chHHHHHHhhcccc---ccCccccccccccccCCCcccHHH
Confidence 99 9999999999999999999999866 88999976655433 688899998 7788999999999
Q ss_pred HHHHcCccchhhh
Q 010335 260 VARMWGRHWLEPL 272 (513)
Q Consensus 260 ~A~~~g~~~iv~l 272 (513)
+|+..|+.++++-
T Consensus 194 ~A~~~g~~~~v~~ 206 (229)
T 2vge_A 194 WAALHGQEGYVPR 206 (229)
T ss_dssp EEEETTEEEEEEG
T ss_pred HHHHcCCcceeeh
Confidence 9999999998763
No 60
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=7.2e-31 Score=258.72 Aligned_cols=189 Identities=24% Similarity=0.264 Sum_probs=170.4
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCChHHHHHH----
Q 010335 12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQTALMQAC---- 86 (513)
Q Consensus 12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Ga-dvn~~d~~g~TpLh~A~---- 86 (513)
++++.|+..|+++.++.+++.+.+......+..|.||||+|+..|+.++|++|++.|+ +++..|..|.||||+|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 3578899999999999999876553333344456999999999999999999999998 99999999999999999
Q ss_pred -HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchh
Q 010335 87 -RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165 (513)
Q Consensus 87 -~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (513)
..++.+++++|++.|..++..+. .|+||||+|+..|+.+++++|++.+.+
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~~gad---------------------------- 208 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNINAKASQ-AGQTALMLAVSHGRVDVVKALLACEAD---------------------------- 208 (276)
T ss_dssp CSHHHHHHHHHHHHHSCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCC----------------------------
T ss_pred hhhhhHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHhCCCC----------------------------
Confidence 66899999999999988887775 899999999999999999999987654
Q ss_pred HHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244 (513)
Q Consensus 166 ~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~-~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G 244 (513)
++..|..|+||||+|+..|+.++|++|++ .|++++..+.. |.||||+|+..|+.+++++|++++
T Consensus 209 -----~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~----------g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 209 -----VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD----------GSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp -----TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred -----CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCC----------CCCHHHHHHHcCCHHHHHHHHhcc
Confidence 67788999999999999999999999999 89999999977 999999999999999999999874
No 61
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=1.2e-29 Score=230.68 Aligned_cols=156 Identities=33% Similarity=0.443 Sum_probs=142.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
+.++|++|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~ 92 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH-AGMTPLRLAALFGH 92 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCC
Confidence 37899999999999999999999999999999999999999999999999999999999988875 89999999999999
Q ss_pred HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335 125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 204 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv 204 (513)
.+++++|++.+.. ++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus 93 ~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 139 (169)
T 2y1l_E 93 LEIVEVLLKNGAD---------------------------------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139 (169)
T ss_dssp HHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999987653 5667788999999999999999999999999999
Q ss_pred ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335 205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244 (513)
Q Consensus 205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G 244 (513)
+..+.. |.||||+|+..|+.+++++|+++|
T Consensus 140 ~~~~~~----------g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 140 NAQDKF----------GKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp TCCCTT----------SCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCcCCC----------CCCHHHHHHHhCCHHHHHHHHHcC
Confidence 998876 999999999999999999999876
No 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=6.6e-30 Score=237.20 Aligned_cols=158 Identities=25% Similarity=0.288 Sum_probs=149.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHc
Q 010335 43 GGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN 122 (513)
Q Consensus 43 ~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~ 122 (513)
..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..
T Consensus 33 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~ 111 (192)
T 2rfm_A 33 SYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-SGKTPLMWSIIF 111 (192)
T ss_dssp TTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHc
Confidence 3459999999999999999999999999999999999999999999999999999999999998886 899999999999
Q ss_pred CCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 010335 123 GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 202 (513)
Q Consensus 123 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Ga 202 (513)
|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|+
T Consensus 112 ~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 158 (192)
T 2rfm_A 112 GYSEMSYFLLEHGAN---------------------------------VNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158 (192)
T ss_dssp TCHHHHHHHHHTTCC---------------------------------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHCCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 999999999987654 66778899999999999999999999999999
Q ss_pred CcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335 203 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244 (513)
Q Consensus 203 dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G 244 (513)
+++..+.. |.||||+|+..|+.+++++|+++|
T Consensus 159 ~~~~~~~~----------g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 159 DISARDLT----------GLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp CTTCBCTT----------SCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCcCCC----------CCCHHHHHHHhCcHHHHHHHHhcc
Confidence 99999876 999999999999999999999865
No 63
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=6.3e-30 Score=237.31 Aligned_cols=162 Identities=27% Similarity=0.311 Sum_probs=152.3
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcc
Q 010335 71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG 150 (513)
Q Consensus 71 vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~ 150 (513)
+|.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------- 93 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI-EGSTALIWAVKNNRLGIAEKLLSKGSN------------- 93 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCC-------------
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccc-cCccHHHHHHHcCCHHHHHHHHHCCCC-------------
Confidence 467899999999999999999999999999999998875 899999999999999999999987653
Q ss_pred cCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhh
Q 010335 151 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230 (513)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~ 230 (513)
++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+.
T Consensus 94 --------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~ 143 (192)
T 2rfm_A 94 --------------------VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE----------GETPLIVASK 143 (192)
T ss_dssp --------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT----------CCCHHHHHHH
T ss_pred --------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHH
Confidence 5667888999999999999999999999999999999876 9999999999
Q ss_pred CCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS 276 (513)
Q Consensus 231 ~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~ 276 (513)
.|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|.+.
T Consensus 144 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp HTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998754
No 64
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=4.4e-29 Score=224.61 Aligned_cols=158 Identities=32% Similarity=0.440 Sum_probs=144.9
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g 89 (513)
..++|+.|++.|+++++++|++++++++.....+ .||||+|+. |+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g--~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTS--CCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccC--ccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 5689999999999999999999998887655444 999999999 9999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335 90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK 169 (513)
Q Consensus 90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (513)
+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+...
T Consensus 82 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------------- 129 (162)
T 1ihb_A 82 FLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASN------------------------------- 129 (162)
T ss_dssp CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCC-------------------------------
T ss_pred CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHccCCC-------------------------------
Confidence 99999999999999998886 9999999999999999999999876542
Q ss_pred hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 010335 170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 203 (513)
Q Consensus 170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad 203 (513)
++..+..|.||||+|+..|+.+++++|+++|||
T Consensus 130 -~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 130 -VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp -TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred -CCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 466788899999999999999999999999986
No 65
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=3.9e-29 Score=229.45 Aligned_cols=165 Identities=22% Similarity=0.241 Sum_probs=142.8
Q ss_pred CcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 46 NSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~-Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
.++||.|+..|+.++|++|++. +.+++..|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+
T Consensus 6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR-GDDTPLHLAASHGH 84 (179)
T ss_dssp -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCC
Confidence 6888888888888888888887 667888888888888888888888888888888888887775 78888888888888
Q ss_pred HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335 125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 204 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv 204 (513)
.+++++|++.+.. ++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus 85 ~~~v~~Ll~~g~~---------------------------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 131 (179)
T 3f6q_A 85 RDIVQKLLQYKAD---------------------------------INAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131 (179)
T ss_dssp HHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCCC---------------------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 8888888876543 5667788999999999999999999999999999
Q ss_pred ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCC
Q 010335 205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 254 (513)
Q Consensus 205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G 254 (513)
+..+.. |.||||+|+..++.+++++|+++|++++..+..+
T Consensus 132 ~~~~~~----------g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 132 SICNKY----------GEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp SBCCTT----------SCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred chhccC----------CCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence 998876 9999999999999999999999999998776554
No 66
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=2.6e-29 Score=228.76 Aligned_cols=165 Identities=25% Similarity=0.279 Sum_probs=147.8
Q ss_pred cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH 90 (513)
Q Consensus 11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~ 90 (513)
.++||.|++.|+++++++|++.++..... .+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNK-PDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 45799999999999999999999874332 22344999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHh
Q 010335 91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 170 (513)
Q Consensus 91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (513)
.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~--------------------------------- 127 (172)
T 3v30_A 82 TDIVGLLLERDVDINIYDW-NGGTPLLYAVRGNHVKCVEALLARGAD--------------------------------- 127 (172)
T ss_dssp HHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------
T ss_pred HHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------
Confidence 9999999999999998885 899999999999999999999987654
Q ss_pred cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc
Q 010335 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH 210 (513)
Q Consensus 171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~ 210 (513)
++..+..|.||||+|+..|+.+++++|+++|+++...+..
T Consensus 128 ~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~ 167 (172)
T 3v30_A 128 LTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV 167 (172)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC---
T ss_pred ccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCC
Confidence 6677889999999999999999999999999998887765
No 67
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=2.5e-28 Score=221.99 Aligned_cols=158 Identities=36% Similarity=0.491 Sum_probs=144.9
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
+.+.++|+.|++.|+++++++|+++|.+++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDAS--GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 34567999999999999999999999988765544 4899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335 88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (513)
.|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 90 ~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------ 138 (169)
T 2y1l_E 90 FGHLEIVEVLLKNGADVNANDM-EGHTPLHLAAMFGHLEIVEVLLKNGAD------------------------------ 138 (169)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC------------------------------
T ss_pred cCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------------
Confidence 9999999999999999998885 899999999999999999999987654
Q ss_pred HHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 010335 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201 (513)
Q Consensus 168 ~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G 201 (513)
++..|..|.||||+|+.+|+.+++++|++.|
T Consensus 139 ---~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 139 ---VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp ---TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred ---CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 5677888999999999999999999999876
No 68
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=8.2e-29 Score=224.36 Aligned_cols=158 Identities=24% Similarity=0.378 Sum_probs=147.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCc
Q 010335 77 CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGS 156 (513)
Q Consensus 77 ~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 156 (513)
.|.||||+|+..|+.+++++|++.|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------- 61 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQNGAD------------------- 61 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-------------------
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCC-CCCCHHHHHHHCCCHHHHHHHHHcCCC-------------------
Confidence 588999999999999999999999999998886 899999999999999999999987654
Q ss_pred hhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHH
Q 010335 157 SVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 236 (513)
Q Consensus 157 ~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~ei 236 (513)
++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.++
T Consensus 62 --------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~ 117 (167)
T 3v31_A 62 --------------PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKC 117 (167)
T ss_dssp --------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT----------SCCHHHHHHHTTCHHH
T ss_pred --------------CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCC----------CCCHHHHHHHcCCHHH
Confidence 5567788999999999999999999999999999999876 9999999999999999
Q ss_pred HHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335 237 CQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 278 (513)
Q Consensus 237 vk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~ 278 (513)
+++|+++|++++.+|..|+||||+|+..|+.+++++|.+...
T Consensus 118 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (167)
T 3v31_A 118 VKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159 (167)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876543
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.6e-28 Score=218.00 Aligned_cols=149 Identities=28% Similarity=0.378 Sum_probs=86.5
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHH
Q 010335 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR 126 (513)
Q Consensus 47 TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~ 126 (513)
|+||+|+..|+.++|++|+++|++++ .|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~ 81 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK-VDRTPLHMAASEGHAN 81 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHHTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcChHH
Confidence 45555555555555555555555443 344555555555555555555555555555554443 4555555555555555
Q ss_pred HHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc
Q 010335 127 CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 206 (513)
Q Consensus 127 iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~ 206 (513)
++++|++.+.. ++..|..|.||||+|+.+|+.+++++|+++|++++.
T Consensus 82 ~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 128 (153)
T 1awc_B 82 IVEVLLKHGAD---------------------------------VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128 (153)
T ss_dssp HHHHHHTTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 55555544322 344455566666666666667777777777777766
Q ss_pred ccccCCccccccCCCCchhHHHhhCCCHHHHHHH
Q 010335 207 VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240 (513)
Q Consensus 207 ~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~L 240 (513)
.+.. |.||||+|+..|+.+++++|
T Consensus 129 ~~~~----------g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 129 QSKF----------CKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CCTT----------SCCHHHHHHHTTCHHHHHHH
T ss_pred cCCC----------CCCHHHHHHHcCCHHHHHHh
Confidence 6655 67777777777777777665
No 70
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=5e-30 Score=247.05 Aligned_cols=186 Identities=20% Similarity=0.185 Sum_probs=131.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
|.||||.|+..|+.++++.|+++|++++.. ..|.||||+|+..|+.++|++|++.|++++..+. .|.||||+|+..|+
T Consensus 5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~g~ 82 (239)
T 1ycs_B 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGH 82 (239)
T ss_dssp ---------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT-TSCCHHHHHHHHTC
T ss_pred ccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCC
Confidence 489999999999999999999999988854 6788999999999999999999999999888875 89999999999999
Q ss_pred HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335 125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 204 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv 204 (513)
.+++++|++.+.. ++..|..|+||||+|+..|+.++|++|+++|+++
T Consensus 83 ~~~v~~Ll~~ga~---------------------------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 129 (239)
T 1ycs_B 83 TEIVKFLVQFGVN---------------------------------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129 (239)
T ss_dssp HHHHHHHHHHTCC---------------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHcCCC---------------------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 9999999976653 6777888999999999999999999999999999
Q ss_pred ccccccCCccccccCCCC-chhHHH--hhCCCHHHHHHHHHCCCCCCCc---------CCCCCcHHHHHHHcCccchhhh
Q 010335 205 SAVTFHYGTSMDLIGAGS-TPLHFA--ACGGNLKCCQVLLSRGASRMSL---------NCNGWLPLDVARMWGRHWLEPL 272 (513)
Q Consensus 205 n~~~~~~~~~~~~~~~G~-TpLh~A--a~~g~~eivk~LL~~Gad~~~~---------d~~G~TpL~~A~~~g~~~iv~l 272 (513)
+..+.. |. ||||+| +..|+.+++++|+++|++++.. +..+.+++++|...|. ++++
T Consensus 130 ~~~~~~----------~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~v 197 (239)
T 1ycs_B 130 FAMTYS----------DMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTI 197 (239)
T ss_dssp TCCCSS----------SCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEE
T ss_pred ceecCC----------CCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEE
Confidence 998866 55 999999 8889999999999999988876 5667888888877775 4455
Q ss_pred cCCCC
Q 010335 273 LAPSS 277 (513)
Q Consensus 273 L~~~~ 277 (513)
|....
T Consensus 198 l~~~~ 202 (239)
T 1ycs_B 198 IHRED 202 (239)
T ss_dssp CCCCT
T ss_pred EEecC
Confidence 54433
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.5e-28 Score=222.22 Aligned_cols=155 Identities=29% Similarity=0.296 Sum_probs=107.9
Q ss_pred CcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 46 NSPLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~-~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
.||||.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~ 87 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYGH 87 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCC-CCCCHHHHHHHcCc
Confidence 566666666666666666665 3445555556666666666666666666666666666665554 56666666666666
Q ss_pred HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335 125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 204 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv 204 (513)
.+++++|++.+.. ++..|..|+||||+|+..|+.+++++|+++|+++
T Consensus 88 ~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 134 (165)
T 3twr_A 88 YEVAELLVKHGAV---------------------------------VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 134 (165)
T ss_dssp HHHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHhCCCC---------------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 6666666655432 4455667788888888888888888888899998
Q ss_pred ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCC
Q 010335 205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245 (513)
Q Consensus 205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Ga 245 (513)
+..+.. |.||||+|+. ++.+++++|+++||
T Consensus 135 ~~~~~~----------g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 135 TKKNRD----------GNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp TCCCTT----------SCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred cccCCC----------CCChhHhHhc-CChHHHHHHhhccc
Confidence 888866 8899999776 88899999998876
No 72
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.4e-28 Score=218.32 Aligned_cols=152 Identities=26% Similarity=0.285 Sum_probs=141.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCch
Q 010335 78 GQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS 157 (513)
Q Consensus 78 g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (513)
..|+||.|+..|+.++|++|++.|++++. + ..|.||||+|+..|+.+++++|++.+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------- 59 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFTT-D-WLGTSPLHLAAQYGHFSTTEVLLRAGVS-------------------- 59 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCCC-C-TTCCCHHHHHHHHTCHHHHHHHHTTTCC--------------------
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCCc-C-CCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------------
Confidence 46899999999999999999999998763 3 4899999999999999999999976543
Q ss_pred hhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHH
Q 010335 158 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237 (513)
Q Consensus 158 ~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eiv 237 (513)
++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++
T Consensus 60 -------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v 116 (153)
T 1awc_B 60 -------------RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML----------KMTALHWATEHNHQEVV 116 (153)
T ss_dssp -------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT----------SCCHHHHHHHTTCHHHH
T ss_pred -------------CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHHHcCCHHHH
Confidence 5667788999999999999999999999999999999876 99999999999999999
Q ss_pred HHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcC
Q 010335 238 QVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA 274 (513)
Q Consensus 238 k~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~ 274 (513)
++|+++|++++.+|..|+||||+|+..|+.+++++|.
T Consensus 117 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~ 153 (153)
T 1awc_B 117 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153 (153)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred HHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence 9999999999999999999999999999999999873
No 73
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=6.7e-28 Score=215.62 Aligned_cols=151 Identities=26% Similarity=0.297 Sum_probs=82.5
Q ss_pred CcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 46 NSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~-Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
.||||+|+..|+.+++++|++. +.+++..|..|.||||+ +..|+.+++++|+++|++++..+. .|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDT-SGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCc
Confidence 3455555555555555555554 23555555555555555 555555555555555555554443 45555555555555
Q ss_pred HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335 125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 204 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv 204 (513)
.+++++|++.+.. ++..|..|+||||+|+..|+.+++++|+++ +++
T Consensus 81 ~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~ 126 (156)
T 1bd8_A 81 LDTLKVLVEHGAD---------------------------------VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL 126 (156)
T ss_dssp HHHHHHHHHTTCC---------------------------------SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT
T ss_pred HHHHHHHHHcCCC---------------------------------CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC
Confidence 5555555544322 334444555556666555666666666655 555
Q ss_pred ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHH
Q 010335 205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 242 (513)
Q Consensus 205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~ 242 (513)
+..+.. |.||||+|+..|+.+++++|++
T Consensus 127 ~~~~~~----------g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 127 HRRDAR----------GLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp TCCCTT----------SCCHHHHHHHSCCHHHHHHHHT
T ss_pred CCcCCC----------CCCHHHHHHHcCcHHHHHHHHh
Confidence 555544 5666666666666666666654
No 74
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=5.1e-28 Score=221.96 Aligned_cols=167 Identities=23% Similarity=0.311 Sum_probs=149.2
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCC-CccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPC-LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQAC 86 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~-~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~ 86 (513)
....++|+.|++.|+++++++|++.++. ++... ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD--DHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCC--TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccC--CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 3456779999999999999999998544 44333 34489999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335 87 RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166 (513)
Q Consensus 87 ~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (513)
..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~----------------------------- 130 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVANGAL----------------------------- 130 (179)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-----------------------------
T ss_pred HcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-----------------------------
Confidence 99999999999999999999885 999999999999999999999987654
Q ss_pred HHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc
Q 010335 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH 210 (513)
Q Consensus 167 ~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~ 210 (513)
++..+..|.||||+|+..++.+++++|+++|++++..+..
T Consensus 131 ----~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~ 170 (179)
T 3f6q_A 131 ----VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYK 170 (179)
T ss_dssp ----SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCC
T ss_pred ----cchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCcc
Confidence 6778889999999999999999999999999999987754
No 75
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=4.1e-28 Score=219.28 Aligned_cols=162 Identities=32% Similarity=0.408 Sum_probs=141.5
Q ss_pred CCCCCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHH
Q 010335 5 FGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQ 84 (513)
Q Consensus 5 ~g~s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~ 84 (513)
++.+.+.++|+.|++.|+++++++|++.+... ....+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHN 81 (165)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCC-ccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence 44555688999999999999999999865422 22334445899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhch
Q 010335 85 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164 (513)
Q Consensus 85 A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (513)
|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~--------------------------- 133 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHGAD--------------------------- 133 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------
T ss_pred HHHcCcHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------
Confidence 9999999999999999999998886 899999999999999999999987654
Q ss_pred hHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 010335 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 202 (513)
Q Consensus 165 ~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Ga 202 (513)
++.+|..|.||||+|+. |+.+++++|+++|+
T Consensus 134 ------~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 134 ------PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp ------TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred ------CcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 67788899999999776 99999999999886
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=6.7e-30 Score=246.15 Aligned_cols=213 Identities=20% Similarity=0.191 Sum_probs=148.5
Q ss_pred CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335 9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY 88 (513)
Q Consensus 9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~ 88 (513)
.+.++|+.|++.|+.+.++.||++|.+++.. ..+.||||+|+..|+.++|++|++.|+++|.+|..|.||||+|+..
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~---~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN---PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCcccC---chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 4678999999999999999999999988743 3348999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335 89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168 (513)
Q Consensus 89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++.+..
T Consensus 81 g~~~~v~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~------------------------------- 128 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQVCKFLVESGAA------------------------------- 128 (239)
T ss_dssp TCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------------
T ss_pred CCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------------------
Confidence 999999999999999999886 999999999999999999999988764
Q ss_pred HhcccccCCCC-cHHHHH--HHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCC
Q 010335 169 KFVNKAADGGI-TALHMA--ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245 (513)
Q Consensus 169 ~~i~~~d~~G~-TpLh~A--a~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Ga 245 (513)
++..+..|. ||||+| +..|+.+++++|+++|++++..+......+ ....+.+++++|...|. ++++|.+.+.
T Consensus 129 --~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al-~d~~~~~~~eLa~~~G~--~i~vl~~~~~ 203 (239)
T 1ycs_B 129 --VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL-WDYEPQNDDELPMKEGD--CMTIIHREDE 203 (239)
T ss_dssp --TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEES-SCBCCSSTTBCCBCSSC--EEEECCCCTT
T ss_pred --cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEE-eccCCCCCCcccccCCC--EEEEEEecCC
Confidence 566666666 999999 888999999999999999987754311111 11348899999998886 5555555544
Q ss_pred CC------CCcCCCCCcHHHHH
Q 010335 246 SR------MSLNCNGWLPLDVA 261 (513)
Q Consensus 246 d~------~~~d~~G~TpL~~A 261 (513)
+. ...+..|++|.++.
T Consensus 204 ~~~~Ww~~~~~~~~G~~P~~yv 225 (239)
T 1ycs_B 204 DEIEWWWARLNDKEGYVPRNLL 225 (239)
T ss_dssp SCSSEEEEEETTEEEEEEGGGE
T ss_pred CCCCEEEEEECCcEEEeehHHe
Confidence 41 23455566666553
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=3.2e-27 Score=211.20 Aligned_cols=153 Identities=25% Similarity=0.368 Sum_probs=138.0
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcC-CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCN-PCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY 88 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~-~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~ 88 (513)
++++|+.|++.|+++++++|++.. .+++.. +..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL--NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC--CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcccc--CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence 368999999999999999999982 244433 3345999999 999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335 89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168 (513)
Q Consensus 89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++. ..
T Consensus 79 ~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~-~~------------------------------- 125 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAAE-SD------------------------------- 125 (156)
T ss_dssp TCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHTT-SC-------------------------------
T ss_pred CcHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHhChHHHHHHHHhc-cC-------------------------------
Confidence 999999999999999998886 899999999999999999999965 22
Q ss_pred HhcccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDL 200 (513)
Q Consensus 169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~ 200 (513)
++..|..|.||||+|+..|+.+++++|+++
T Consensus 126 --~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 126 --LHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp --TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred --CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 667788999999999999999999999974
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.4e-30 Score=248.02 Aligned_cols=185 Identities=18% Similarity=0.095 Sum_probs=160.5
Q ss_pred CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335 9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY 88 (513)
Q Consensus 9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~ 88 (513)
.+.++||.|++.|+.+++++|++.|++++..+.. |.||||+|+..|+.++|++|+++|+++|.+|..|.||||+|+..
T Consensus 20 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~--g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~ 97 (229)
T 2vge_A 20 NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE--GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC 97 (229)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred chhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence 4457899999999999999999999988765444 49999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccCCCCCcHHHHH--HHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335 89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFA--AVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166 (513)
Q Consensus 89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A--~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (513)
|+.++|++|+++|++++..++..|.||||+| +..|+.+++++|++.+..
T Consensus 98 g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~----------------------------- 148 (229)
T 2vge_A 98 NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS----------------------------- 148 (229)
T ss_dssp TCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-----------------------------
T ss_pred CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-----------------------------
Confidence 9999999999999999998766899999999 999999999999976532
Q ss_pred HHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC--cccccccCCccccccCCCCchhHHHhhCCCHHHHHHHH
Q 010335 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN--VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 241 (513)
Q Consensus 167 ~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad--vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL 241 (513)
++..+..|.|+|+.++..+. +++|++.|++ ++..|.. |.||||+|+..|+.++|+.++
T Consensus 149 ----~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~----------G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 149 ----MGLMNSGAVYALWDYSAEFG---DELSFREGESVTVLRRDGP----------EETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp ----TTTSGGGEEEESSCBCCSST---TBCCBCTTCEEEEEESSCT----------TCSSEEEEEETTEEEEEEGGG
T ss_pred ----cccccCCchHHHHHHhhccc---cccCccccccccccccCCC----------cccHHHHHHHcCCcceeehhh
Confidence 55566777888886555443 3678889998 5566655 999999999999999987643
No 79
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1e-29 Score=261.06 Aligned_cols=213 Identities=16% Similarity=0.041 Sum_probs=164.4
Q ss_pred cHHHHHHHHcCCHHHHHHHHhcCCCCccc-cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCChHHHHHH
Q 010335 11 GERLVSAARDGDFVEAKMLLDCNPCLAKY-STFGGLNSPLHFAAAKGHNEIVALLLENGADV---NSRNYCGQTALMQAC 86 (513)
Q Consensus 11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~-~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadv---n~~d~~g~TpLh~A~ 86 (513)
.++||.|++.|+.++|++|++.|...... ..+..+.||||+|+..|+.++|++|+++|+|+ +..+.+ .||||+|+
T Consensus 93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa 171 (376)
T 2aja_A 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA 171 (376)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence 48999999999999999999998732111 11223379999999999999999999999863 333333 99999999
Q ss_pred HcCCHHHHHHHHhcCCCCCc--ccCCCCCcHHHHHH-HcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhc
Q 010335 87 RYGHWEVVQTLLLFRCNVTR--ADYLSGRTALHFAA-VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163 (513)
Q Consensus 87 ~~g~~eiVk~LL~~ga~~~~--~~~~~G~TpLh~A~-~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (513)
..|+.++|++|+++|++++. .+. .|.||||+|+ .+|+.+++++|++.+.
T Consensus 172 ~~G~~eiv~~Ll~~ga~~~~~~~d~-~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------------------------- 223 (376)
T 2aja_A 172 ENGHLHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGRGHHNVINFLLDCPV--------------------------- 223 (376)
T ss_dssp HTTCHHHHHHHHHSCGGGHHHHHHH-HHHHHHHHHHSTTCCHHHHHHHTTSHH---------------------------
T ss_pred HCCCHHHHHHHHHcCCccchhccCC-CCCCHHHHHHHHCCCHHHHHHHHhCCC---------------------------
Confidence 99999999999999999876 554 7999999999 9999999999985421
Q ss_pred hhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCC----------
Q 010335 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---------- 233 (513)
Q Consensus 164 ~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~---------- 233 (513)
.|.||||+|+.+|+.+++++|+++|++++..+ +++++|+..|+
T Consensus 224 -------------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~--------------~~l~~A~~~g~~~vv~~~~~~ 276 (376)
T 2aja_A 224 -------------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH--------------DAFKLSNPDGVFDLVTKSECL 276 (376)
T ss_dssp -------------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH--------------TTTTTTSSSSCCCCSSHHHHH
T ss_pred -------------ccchHHHHHHHCCCHHHHHHHHhcCccccccc--------------HHHHHHHHCCChhhhcHHhhh
Confidence 16799999999999999999999999887655 24444444444
Q ss_pred -----------------HHHHHHHHHCCC-----CCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCC
Q 010335 234 -----------------LKCCQVLLSRGA-----SRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA 279 (513)
Q Consensus 234 -----------------~eivk~LL~~Ga-----d~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~ 279 (513)
.+.+++|++.++ +.....+.+.||||+|+..|+.+++++|++.+.+
T Consensus 277 ~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~v 344 (376)
T 2aja_A 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV 344 (376)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHHH
T ss_pred hhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChHH
Confidence 345555554211 1112233567999999999999999999986543
No 80
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=3.7e-26 Score=200.05 Aligned_cols=133 Identities=19% Similarity=0.229 Sum_probs=69.1
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhh
Q 010335 69 ADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI 148 (513)
Q Consensus 69 advn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~ 148 (513)
++++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|+||||+|+. |+.+++++|++.+..
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~~----------- 69 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR-FGRRPIQVMMM-GSAQVAELLLLHGAE----------- 69 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCTTTTTSTT-SCHHHHHHHHHHTCC-----------
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCC-CCCCHHHHHHc-CCHHHHHHHHHCCCC-----------
Confidence 34444444444444444444444444444444444444432 44444444444 444444444443322
Q ss_pred cccCCCCchhhhhhchhHHHHhcccccCC-CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHH
Q 010335 149 EGDRGDGSSVKSKCDQSALSKFVNKAADG-GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 227 (513)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~ 227 (513)
++..+.. |+||||+|+..|+.+++++|+++|++++..+.. |.||||+
T Consensus 70 ----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~----------g~tpl~~ 117 (136)
T 1d9s_A 70 ----------------------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW----------GRLPVDL 117 (136)
T ss_dssp ----------------------SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSS----------SSCHHHH
T ss_pred ----------------------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHH
Confidence 3333444 555555556666666666666666666665544 6666666
Q ss_pred HhhCCCHHHHHHHHHCCCC
Q 010335 228 AACGGNLKCCQVLLSRGAS 246 (513)
Q Consensus 228 Aa~~g~~eivk~LL~~Gad 246 (513)
|+..++.+++++|+++|||
T Consensus 118 A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 118 AEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHTCHHHHHHHHHHHCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 6666666666666666654
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=3.2e-26 Score=205.34 Aligned_cols=139 Identities=26% Similarity=0.271 Sum_probs=82.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+ .|+.++|++|+++|++++..+
T Consensus 12 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d---------------- 74 (156)
T 1bi7_B 12 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD---------------- 74 (156)
T ss_dssp STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCC----------------
T ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcC----------------
Confidence 366666666666666666666666666666666666666663 666666666666666555444
Q ss_pred HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCc-HHHHHHHcCCHHHHHHHHHcCCC
Q 010335 125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT-ALHMAALNGYFDCVQLLLDLHAN 203 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~T-pLh~Aa~~g~~eiv~~Ll~~Gad 203 (513)
..|.| |||+|+..|+.++|++|+++|++
T Consensus 75 ---------------------------------------------------~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~ 103 (156)
T 1bi7_B 75 ---------------------------------------------------PATLTRPVHDAAREGFLDTLVVLHRAGAR 103 (156)
T ss_dssp ---------------------------------------------------TTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred ---------------------------------------------------CCCCcHHHHHHHHCCCHHHHHHHHHcCCC
Confidence 34555 66666666667777777777777
Q ss_pred cccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 010335 204 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261 (513)
Q Consensus 204 vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A 261 (513)
++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||.+.+
T Consensus 104 ~~~~d~~----------g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 104 LDVRDAW----------GRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp SSCCCTT----------CCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred CcccCCC----------CCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 7777655 77777777777777777777777777777777777776543
No 82
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=3.2e-28 Score=249.92 Aligned_cols=192 Identities=15% Similarity=-0.014 Sum_probs=152.8
Q ss_pred HHHHHHH-cCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCChHHHHHHHc
Q 010335 13 RLVSAAR-DGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADV---NSRNYCGQTALMQACRY 88 (513)
Q Consensus 13 ~L~~Aa~-~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadv---n~~d~~g~TpLh~A~~~ 88 (513)
.++.|.. .++.+.+++|+++|.+. +||||+|+..|+.++|++|+++|+.. +..|..|.||||+|+.+
T Consensus 68 ~~~~a~~~~~~~~~~~~l~~~g~~~---------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~ 138 (376)
T 2aja_A 68 CLYYAHYNRNAKQLWSDAHKKGIKS---------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 138 (376)
T ss_dssp HHHHHHTTTTCTTHHHHHHHHTCCH---------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHcCCCc---------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence 4555655 57888889998887543 69999999999999999999999832 24455688999999999
Q ss_pred CCHHHHHHHHhcCCCC---CcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchh
Q 010335 89 GHWEVVQTLLLFRCNV---TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165 (513)
Q Consensus 89 g~~eiVk~LL~~ga~~---~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (513)
|+.++|++|+++|+++ +.... + .||||+|+..|+.+++++|++.+..
T Consensus 139 G~~eiv~~Ll~~gad~~~~~i~~~-~-~TpLh~Aa~~G~~eiv~~Ll~~ga~---------------------------- 188 (376)
T 2aja_A 139 GHLHVLNRLCELAPTEIMAMIQAE-N-YHAFRLAAENGHLHVLNRLCELAPT---------------------------- 188 (376)
T ss_dssp TCHHHHHHHHHSCTTTHHHHHSHH-H-HHHHHHHHHTTCHHHHHHHHHSCGG----------------------------
T ss_pred CCHHHHHHHHhCCCCccccccCCC-C-CCHHHHHHHCCCHHHHHHHHHcCCc----------------------------
Confidence 9999999999999863 22222 2 8999999999999999999987642
Q ss_pred HHHHhccc--ccCCCCcHHHHHH-HcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHH
Q 010335 166 ALSKFVNK--AADGGITALHMAA-LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 242 (513)
Q Consensus 166 ~~~~~i~~--~d~~G~TpLh~Aa-~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~ 242 (513)
++. .|..|.||||+|+ .+|+.++|++|++.|++ |.||||+|+..|+.+++++|++
T Consensus 189 -----~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-----------------~~taL~~Aa~~g~~evv~lL~~ 246 (376)
T 2aja_A 189 -----EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-----------------LAYAEIHEFEYGEKYVNPFIAR 246 (376)
T ss_dssp -----GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-----------------HHHHHHCTTTTTTTTHHHHHHH
T ss_pred -----cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-----------------cchHHHHHHHCCCHHHHHHHHh
Confidence 222 4556889999999 99999999999997742 7799999999999999999999
Q ss_pred CCCCCCCcCCCCCcHHHHHHHcCccch
Q 010335 243 RGASRMSLNCNGWLPLDVARMWGRHWL 269 (513)
Q Consensus 243 ~Gad~~~~d~~G~TpL~~A~~~g~~~i 269 (513)
+|++++.++ ++++.|+..|+.++
T Consensus 247 ~ga~~~~~~----~~l~~A~~~g~~~v 269 (376)
T 2aja_A 247 HVNRLKEMH----DAFKLSNPDGVFDL 269 (376)
T ss_dssp HHHHHHHHH----TTTTTTSSSSCCCC
T ss_pred cCccccccc----HHHHHHHHCCChhh
Confidence 999876654 25556666666553
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=2.6e-25 Score=194.64 Aligned_cols=133 Identities=25% Similarity=0.258 Sum_probs=119.8
Q ss_pred CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCC-C
Q 010335 34 PCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS-G 112 (513)
Q Consensus 34 ~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~-G 112 (513)
++++.... .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++|++++..+. . |
T Consensus 3 ~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~-~~g 78 (136)
T 1d9s_A 3 PGIHMLGG--SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADP-ATL 78 (136)
T ss_dssp CCCSCCCC--CCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBT-TTT
T ss_pred CCccCCCC--CCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCC-CCC
Confidence 34444333 34899999999999999999999999999999999999999999 999999999999999999886 6 9
Q ss_pred CcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHH
Q 010335 113 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 192 (513)
Q Consensus 113 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~e 192 (513)
.||||+|+..|+.+++++|++.+.. ++..|..|.||||+|+..++.+
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~---------------------------------~~~~d~~g~tpl~~A~~~~~~~ 125 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGAR---------------------------------LDVCDAWGRLPVDLAEEQGHRD 125 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCC---------------------------------CCCCSSSSSCHHHHHHHHTCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCccCCCCCCHHHHHHHcCCHH
Confidence 9999999999999999999987654 6677889999999999999999
Q ss_pred HHHHHHHcCCC
Q 010335 193 CVQLLLDLHAN 203 (513)
Q Consensus 193 iv~~Ll~~Gad 203 (513)
++++|+++|+|
T Consensus 126 ~~~~Ll~~Gad 136 (136)
T 1d9s_A 126 IARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHcCCC
Confidence 99999999986
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=1.1e-25 Score=201.74 Aligned_cols=125 Identities=24% Similarity=0.315 Sum_probs=107.0
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh-HHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQT-ALMQAC 86 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~T-pLh~A~ 86 (513)
..+.++||.|++.|+++++++|+++|.+++.....+ .||||+|+ .|+.+++++|+++|++++.+|..|.| |||+|+
T Consensus 10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~ 86 (156)
T 1bi7_B 10 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYG--RRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA 86 (156)
T ss_dssp CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSS--CCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred ccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC--CCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 345789999999999999999999999887665544 89999985 99999999999999999999999999 999999
Q ss_pred HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccC
Q 010335 87 RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV 136 (513)
Q Consensus 87 ~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~ 136 (513)
..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+.
T Consensus 87 ~~~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~ga 135 (156)
T 1bi7_B 87 REGFLDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARYLRAAAG 135 (156)
T ss_dssp HHTCHHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHSSCC-
T ss_pred HCCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHhCHHHHHHHHHHcCC
Confidence 99999999999999999887764 67777777776666666666665443
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=2.7e-26 Score=212.72 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~----eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
++|+.|++.|+++.++.+++.+++... +..|.||||+|+..|+. +++++||++|+|+|.+|..|+||||+|+.
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~~---~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYEDKE---SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ 84 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSCHH---HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCccccc---ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 346666666666666666665543211 01235666666666653 35666666666666666666666666666
Q ss_pred cCC------HHHHHHHHhcCCCCCcccCCCCC-cHHHHHHH
Q 010335 88 YGH------WEVVQTLLLFRCNVTRADYLSGR-TALHFAAV 121 (513)
Q Consensus 88 ~g~------~eiVk~LL~~ga~~~~~~~~~G~-TpLh~A~~ 121 (513)
.|+ .++|++|+++|++++..+. .|. ||||+|+.
T Consensus 85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~-~g~ttpLh~A~~ 124 (186)
T 3t8k_A 85 GGGNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIFN 124 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCSSSCBG-GGTBCTTGGGGG
T ss_pred cCCcchhhHHHHHHHHHHCCCCCCccCC-CcCchHHHHHHH
Confidence 554 3455555555555555553 454 55555543
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=1.3e-25 Score=207.99 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=41.9
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHcCCH----HHHHHHHhcCCCCCcccCCCCCcHHHHHHH
Q 010335 47 SPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQTALMQACRYGHW----EVVQTLLLFRCNVTRADYLSGRTALHFAAV 121 (513)
Q Consensus 47 TpLh~Aa~~g~~eivk~LL~~Gadvn~~d-~~g~TpLh~A~~~g~~----eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~ 121 (513)
++|+.|+..|+++.++.|++.+. +.++ ..|+||||+|+.+|+. ++|++|+++|++++..+. .|+||||+|+.
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~-~g~TpLh~a~~ 84 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK-EGTTLFFPLFQ 84 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCT-TCCCTHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHH
Confidence 44555555555555555544432 2333 3455555555555442 245555555555554442 45555555554
Q ss_pred cCC------HHHHHHHHHccCC
Q 010335 122 NGH------VRCIRLVVADFVP 137 (513)
Q Consensus 122 ~g~------~~iv~~Ll~~~~~ 137 (513)
.++ .+++++|++.|++
T Consensus 85 ~~~~~~~~~~~iv~~Ll~~Gad 106 (186)
T 3t8k_A 85 GGGNDITGTTELCKIFLEKGAD 106 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCC
T ss_pred cCCcchhhHHHHHHHHHHCCCC
Confidence 443 3445555544443
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=5.7e-24 Score=182.07 Aligned_cols=125 Identities=46% Similarity=0.657 Sum_probs=99.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGH 80 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHcCh
Confidence 47888888888888888888888888888888888888888888888888888888888777765 78888888888888
Q ss_pred HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 010335 125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 203 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad 203 (513)
.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|+|
T Consensus 81 ~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEAGAD---------------------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCC---------------------------------CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 8888888866543 455667788888888888888888888888875
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=4.1e-24 Score=186.95 Aligned_cols=122 Identities=34% Similarity=0.436 Sum_probs=81.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCH
Q 010335 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV 125 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~ 125 (513)
.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.
T Consensus 15 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~ 93 (136)
T 2jab_A 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA-IGFTPLHLAAFIGHL 93 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCH
T ss_pred cHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcCCH
Confidence 5667777777777777777766666666666667777777777777777777766666666654 666777777777777
Q ss_pred HHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 010335 126 RCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201 (513)
Q Consensus 126 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G 201 (513)
+++++|++.+.. ++..|..|.||||+|+..|+.+++++|+++|
T Consensus 94 ~~v~~Ll~~g~~---------------------------------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 94 EIAEVLLKHGAD---------------------------------VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHHHHcCCC---------------------------------CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 777766655432 4455566667777777777777777766654
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=1.1e-23 Score=180.22 Aligned_cols=126 Identities=44% Similarity=0.619 Sum_probs=117.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCc
Q 010335 77 CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGS 156 (513)
Q Consensus 77 ~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 156 (513)
+|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------------- 60 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGAD------------------- 60 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCC-------------------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcCcHHHHHHHHHcCCC-------------------
Confidence 489999999999999999999999999998875 899999999999999999999987643
Q ss_pred hhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHH
Q 010335 157 SVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 236 (513)
Q Consensus 157 ~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~ei 236 (513)
++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.++
T Consensus 61 --------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~l~~A~~~~~~~~ 116 (126)
T 1n0r_A 61 --------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEV 116 (126)
T ss_dssp --------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHH
T ss_pred --------------CcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHcCcHHH
Confidence 5667788999999999999999999999999999998876 9999999999999999
Q ss_pred HHHHHHCCCC
Q 010335 237 CQVLLSRGAS 246 (513)
Q Consensus 237 vk~LL~~Gad 246 (513)
+++|+++|||
T Consensus 117 ~~~Ll~~Gad 126 (126)
T 1n0r_A 117 VKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHcCCC
Confidence 9999999986
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=2.2e-23 Score=182.27 Aligned_cols=124 Identities=33% Similarity=0.432 Sum_probs=115.0
Q ss_pred CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335 9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY 88 (513)
Q Consensus 9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~ 88 (513)
.+.++||.|++.|+++++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEY--GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 3567999999999999999999999988765544 48999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 010335 89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADF 135 (513)
Q Consensus 89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~ 135 (513)
|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.|
T Consensus 91 ~~~~~v~~Ll~~g~~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 91 GHLEIAEVLLKHGADVNAQDK-FGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCHHHHHHHHHcCCCCcCcCC-CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999998885 8999999999999999999998753
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=7e-24 Score=185.50 Aligned_cols=134 Identities=29% Similarity=0.301 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhh
Q 010335 68 GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 147 (513)
Q Consensus 68 Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~ 147 (513)
|+|+ .+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------- 68 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH-AGWTPLHEACNHGHLKVVELLLQHKAL---------- 68 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCc----------
Confidence 3444 4555555666666655565666655555555555543 555666666666666666666554332
Q ss_pred hcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHH
Q 010335 148 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 227 (513)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~ 227 (513)
++..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+
T Consensus 69 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~tpl~~ 115 (137)
T 3c5r_A 69 -----------------------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF----------GLRPVDY 115 (137)
T ss_dssp -----------------------TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCGGGG
T ss_pred -----------------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHH
Confidence 3445556778888888888888888888888888888866 8899999
Q ss_pred HhhCCCHHHHHHHHHCCCC
Q 010335 228 AACGGNLKCCQVLLSRGAS 246 (513)
Q Consensus 228 Aa~~g~~eivk~LL~~Gad 246 (513)
|+..+..+++++|.+.+..
T Consensus 116 A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 116 TDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp CCCHHHHHHHSCC------
T ss_pred HhhccHHHHHhhccccccC
Confidence 9888888888887766543
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=8.8e-24 Score=184.88 Aligned_cols=133 Identities=29% Similarity=0.368 Sum_probs=116.1
Q ss_pred CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCc
Q 010335 101 RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180 (513)
Q Consensus 101 ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~T 180 (513)
|+++ ..+ ..|.||||+|+..|+.+++++|++.+.. ++..|..|.|
T Consensus 1 G~d~-~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t 45 (137)
T 3c5r_A 1 GIDP-FTN-HRGETLLHIASIKGDIPSVEYLLQNGSD---------------------------------PNVKDHAGWT 45 (137)
T ss_dssp ---C-CCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------SCCCCTTSCC
T ss_pred CCCC-CcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCcCCCCCCC
Confidence 4566 334 4899999999999999999999987653 5677888999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Q 010335 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 260 (513)
Q Consensus 181 pLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~ 260 (513)
|||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+|||++
T Consensus 46 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~ 115 (137)
T 3c5r_A 46 PLHEACNHGHLKVVELLLQHKALVNTTGYQ----------NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCGG----------GCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGG
T ss_pred HHHHHHHcCCHHHHHHHHHcCCcccCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 999999999999999999999999999977 9999999999999999999999999999999999999999
Q ss_pred HHHcCccchhhhcCCCCC
Q 010335 261 ARMWGRHWLEPLLAPSSD 278 (513)
Q Consensus 261 A~~~g~~~iv~lL~~~~~ 278 (513)
|+..+..+++++|.+...
T Consensus 116 A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 116 TDDESMKSLLLLPEKNES 133 (137)
T ss_dssp CCCHHHHHHHSCC-----
T ss_pred HhhccHHHHHhhcccccc
Confidence 999999999998877553
No 93
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.89 E-value=3.8e-23 Score=206.13 Aligned_cols=139 Identities=22% Similarity=0.233 Sum_probs=122.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCCcccCCCCCcHH
Q 010335 46 NSPLHFAAAKGHNEIVALLLENGADVNS------RNYCGQTALMQACRY---GHWEVVQTLLLFRCNVTRADYLSGRTAL 116 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~------~d~~g~TpLh~A~~~---g~~eiVk~LL~~ga~~~~~~~~~G~TpL 116 (513)
.++|+.|+..|+++.|++|++.|++++. .|..|.||||+|+.. |+.++|++|+++|++++..+. .|.|||
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~-~G~TpL 230 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA-DGNTAL 230 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT-TCCCHH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC-CCCCHH
Confidence 4679999999999999999999999998 689999999999997 899999999999999999885 999999
Q ss_pred HHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHH
Q 010335 117 HFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQL 196 (513)
Q Consensus 117 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~ 196 (513)
|+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad---------------------------------~~~~d~~G~TpL~~A~~~~~~~iv~~ 277 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRAL---------------------------------VGTVNEAGETALDIARKKHHKECEEL 277 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC---------------------------------CSCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999987764 67788899999999999999999999
Q ss_pred HHHcCCCcccccccCCccccccCCCCchhHHHhhCCCH
Q 010335 197 LLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 234 (513)
Q Consensus 197 Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~ 234 (513)
|+++|++ . |.||||+|+..|+.
T Consensus 278 Ll~~ga~------~----------g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 278 LEQAQAG------T----------FAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHH------T----------TSSCCC--------
T ss_pred HHHhcCC------C----------CCChhHHHHhcCCc
Confidence 9999876 1 88999999998864
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=1.2e-23 Score=203.11 Aligned_cols=141 Identities=26% Similarity=0.248 Sum_probs=126.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
|.||||+|+..|+.++|++|++ |+++|.+|..|.||||+|+..|+.++|++|+++|++++..++..|.||||+|+..|+
T Consensus 45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~ 123 (244)
T 3ui2_A 45 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123 (244)
T ss_dssp HHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence 4899999999999999999999 999999999999999999999999999999999999998886689999999999999
Q ss_pred HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335 125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 204 (513)
Q Consensus 125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv 204 (513)
.+++++|++.+.. ++..|..|.||||+|+..++.
T Consensus 124 ~~~v~~Ll~~ga~---------------------------------~~~~d~~g~t~l~~A~~~~~~------------- 157 (244)
T 3ui2_A 124 PEVVEALVELGAD---------------------------------IEVEDERGLTALELAREILKT------------- 157 (244)
T ss_dssp HHHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHCCCC---------------------------------CCCCCCCCCcHHHHHHHHHhc-------------
Confidence 9999999987654 677888999999999863221
Q ss_pred ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335 205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246 (513)
Q Consensus 205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad 246 (513)
. .+.||||+|+..|+.+++++|++++.+
T Consensus 158 ----~----------~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 158 ----T----------PKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp ----C----------CCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred ----c----------CCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 1 288999999999999999999987654
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=2.6e-23 Score=191.46 Aligned_cols=166 Identities=23% Similarity=0.229 Sum_probs=131.8
Q ss_pred HHHcCCHHHHHHHHhcCCCCccc---------cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 17 AARDGDFVEAKMLLDCNPCLAKY---------STFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 17 Aa~~G~~e~vk~LL~~~~~~~~~---------~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
|++.|..+.+++|++.+...... ..+..|.||||+|+..|+.+++++|++ |+++|.+|..|.||||+|+.
T Consensus 7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~ 85 (183)
T 3deo_A 7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAG 85 (183)
T ss_dssp EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHH
T ss_pred HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHH
Confidence 44555666666666443221110 011234899999999999999999999 99999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335 88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (513)
.|+.++|++|+++|++++..++..|+||||+|+..|+.+++++|++.+..
T Consensus 86 ~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~------------------------------ 135 (183)
T 3deo_A 86 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD------------------------------ 135 (183)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCC------------------------------
T ss_pred cCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC------------------------------
Confidence 99999999999999999888855899999999999999999999977654
Q ss_pred HHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243 (513)
Q Consensus 168 ~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~ 243 (513)
++.+|..|.||||+|+..++. . .+.+||++|+..|+.+++++|.++
T Consensus 136 ---~~~~d~~g~tpl~~A~~~~~~-----------------~----------~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 136 ---IEVEDERGLTALELAREILKT-----------------T----------PKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp ---TTCCCTTSCCHHHHHHHHHHT-----------------C----------CCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ---CcCCCCCCCCHHHHHHHhccC-----------------c----------ccccHHHHHHHcCHHHHHHHHHHh
Confidence 667788899999999874322 1 267899999999999999998765
No 96
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=3e-23 Score=196.84 Aligned_cols=137 Identities=26% Similarity=0.281 Sum_probs=93.7
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHc-cCCCCccccchhhhcccCC
Q 010335 75 NYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVAD-FVPSVPFEVMNTQIEGDRG 153 (513)
Q Consensus 75 d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~ 153 (513)
+..|.||||+|+..|+.++|++|++.|++++..+. .|.||||+|+..|+.+++++|++. +..
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---------------- 132 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK-AGSTALYWACHGGHKDIVEMLFTQPNIE---------------- 132 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHTTSTTCC----------------
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHcCCCCC----------------
Confidence 44567777777777777777777777777776664 677777777777777777777754 322
Q ss_pred CCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCC
Q 010335 154 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 233 (513)
Q Consensus 154 ~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~ 233 (513)
++..|..|+||||+|+..|+.++|++|+++|++++..+.. |.||||+|+..++
T Consensus 133 -----------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~ 185 (222)
T 3ehr_A 133 -----------------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE----------KKLAFDMATNAAC 185 (222)
T ss_dssp -----------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT----------SCCHHHHCCSHHH
T ss_pred -----------------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC----------CCCHHHHhcchhH
Confidence 5666777888888888888888888888888888888866 8888888888888
Q ss_pred HHHHHHHHHCCCCCCCcCCCCC
Q 010335 234 LKCCQVLLSRGASRMSLNCNGW 255 (513)
Q Consensus 234 ~eivk~LL~~Gad~~~~d~~G~ 255 (513)
.++++.|+++|++.+.+|.+|+
T Consensus 186 ~~~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 186 ASLLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp HHHHC-----------------
T ss_pred HHHHHHHhccchhhhccchhhh
Confidence 8888888888888877766654
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=201.24 Aligned_cols=142 Identities=21% Similarity=0.207 Sum_probs=120.5
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccc----cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHH
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKY----STFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCGQTAL 82 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~----~~~~~g~TpLh~Aa~~---g~~eivk~LL~~Gadvn~~d~~g~TpL 82 (513)
..++|+.|++.|+++.+++|++.|++++.. ..+..|.||||+|+.. |+.+++++|+++|+++|.+|..|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 457899999999999999999999988752 1233459999999997 899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhh
Q 010335 83 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162 (513)
Q Consensus 83 h~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (513)
|+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+.
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~~~~~iv~~Ll~~ga-------------------------- 283 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNE-AGETALDIARKKHHKECEELLEQAQA-------------------------- 283 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCT-TSCCHHHHHHHHTCHHHHHHHHHHHH--------------------------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHhcC--------------------------
Confidence 999999999999999999999998886 89999999999999999999986432
Q ss_pred chhHHHHhcccccCCCCcHHHHHHHcCCH
Q 010335 163 DQSALSKFVNKAADGGITALHMAALNGYF 191 (513)
Q Consensus 163 ~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~ 191 (513)
+.|.||||+|+..|+.
T Consensus 284 -------------~~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 284 -------------GTFAFPLHVDYSWVIS 299 (301)
T ss_dssp -------------HTTSSCCC--------
T ss_pred -------------CCCCChhHHHHhcCCc
Confidence 1478999999998864
No 98
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=2.8e-22 Score=184.55 Aligned_cols=137 Identities=26% Similarity=0.259 Sum_probs=122.7
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHc
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQTALMQACRY 88 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d-~~g~TpLh~A~~~ 88 (513)
+.++||.|++.|+.+++++|++ +.+++..+.. |.||||+|+..|+.+++++|+++|+++|.+| ..|.||||+|+..
T Consensus 44 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~ 120 (183)
T 3deo_A 44 YETPWWTAARKADEQALSQLLE-DRDVDAVDEN--GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120 (183)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence 4589999999999999999999 8777665444 4999999999999999999999999999998 8999999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335 89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168 (513)
Q Consensus 89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
|+.+++++|+++|++++..+. .|.||||+|+..++.
T Consensus 121 ~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~------------------------------------------- 156 (183)
T 3deo_A 121 VRPEVVEALVELGADIEVEDE-RGLTALELAREILKT------------------------------------------- 156 (183)
T ss_dssp TCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHHHHT-------------------------------------------
T ss_pred CcHHHHHHHHHcCCCCcCCCC-CCCCHHHHHHHhccC-------------------------------------------
Confidence 999999999999999998885 999999999863321
Q ss_pred HhcccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDL 200 (513)
Q Consensus 169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~ 200 (513)
..+.++|++|+..|+.+++++|.++
T Consensus 157 -------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 -------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp -------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred -------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 2356999999999999999999865
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=1.4e-22 Score=192.25 Aligned_cols=132 Identities=26% Similarity=0.283 Sum_probs=110.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhc-CCCCCcccCCCCCcHHHHHHHcC
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNG 123 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~-ga~~~~~~~~~G~TpLh~A~~~g 123 (513)
|.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..|+.++|++|+++ |++++..+. .|.||||+|+..|
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~-~g~tpL~~A~~~~ 151 (222)
T 3ehr_A 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK-LGDTALHAAAWKG 151 (222)
T ss_dssp ESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCT-TSCCHHHHHHHHT
T ss_pred cccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCC-CCCCHHHHHHHcC
Confidence 47999999999999999999999999999999999999999999999999999999 999998886 9999999999999
Q ss_pred CHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 010335 124 HVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 203 (513)
Q Consensus 124 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad 203 (513)
+.+++++|++.+.. ++..+..|.||||+|+..++.++++.|++.|++
T Consensus 152 ~~~~v~~Ll~~ga~---------------------------------~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 152 YADIVQLLLAKGAR---------------------------------TDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198 (222)
T ss_dssp CHHHHHHHHHHTCC---------------------------------SCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred CHHHHHHHHHcCCC---------------------------------CccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence 99999999987654 677888999999999999999999999999998
Q ss_pred ccccccc
Q 010335 204 VSAVTFH 210 (513)
Q Consensus 204 vn~~~~~ 210 (513)
.+..+..
T Consensus 199 ~~~~~~~ 205 (222)
T 3ehr_A 199 RTLSNAE 205 (222)
T ss_dssp -------
T ss_pred hhccchh
Confidence 8776654
No 100
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=3.2e-22 Score=193.13 Aligned_cols=142 Identities=25% Similarity=0.243 Sum_probs=126.3
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHc
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQTALMQACRY 88 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d-~~g~TpLh~A~~~ 88 (513)
+.++||.|++.|+.+++++|++ +.+++..+.. |.||||+|+..|+.++|++|+++|+++|.+| ..|.||||+|+..
T Consensus 45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 45 YETPWWTAARKADEQALSQLLE-DRDVDAVDEN--GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTT--SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence 4589999999999999999999 8877765544 4999999999999999999999999999998 8899999999999
Q ss_pred CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335 89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168 (513)
Q Consensus 89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (513)
|+.++|++|+++|++++..+. .|.||||+|+..++
T Consensus 122 g~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~~~-------------------------------------------- 156 (244)
T 3ui2_A 122 VRPEVVEALVELGADIEVEDE-RGLTALELAREILK-------------------------------------------- 156 (244)
T ss_dssp TCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHHT--------------------------------------------
T ss_pred CCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHHHh--------------------------------------------
Confidence 999999999999999998886 99999999985211
Q ss_pred HhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Q 010335 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVS 205 (513)
Q Consensus 169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn 205 (513)
...+.||||+|+..|+.+++++|++.+.+..
T Consensus 157 ------~~~~~~~l~~a~~~g~~~iv~~L~~~~~~~~ 187 (244)
T 3ui2_A 157 ------TTPKGNPMQFGRRIGLEKVINVLEGQVFEYA 187 (244)
T ss_dssp ------TCCCSSHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred ------ccCCCCHHHHHHHcChHHHHHHHHHhccccc
Confidence 1347899999999999999999999766543
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=4e-22 Score=171.03 Aligned_cols=117 Identities=27% Similarity=0.280 Sum_probs=104.4
Q ss_pred CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335 8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87 (513)
Q Consensus 8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~ 87 (513)
+.+.++||.|++.|+++++++|++.+++++..... |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG--GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTT--SSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCC--CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 45678999999999999999999999988765444 4899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHH
Q 010335 88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127 (513)
Q Consensus 88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~i 127 (513)
.|+.++|++|+++|++++..+. .|.||||+|...+..++
T Consensus 83 ~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGADKTVKGP-DGLTAFEATDNQAIKAL 121 (123)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHCCCHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHhCCHHHHHH
Confidence 9999999999999999998885 99999999954444333
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=3.8e-22 Score=171.16 Aligned_cols=112 Identities=28% Similarity=0.375 Sum_probs=102.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCC
Q 010335 111 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 190 (513)
Q Consensus 111 ~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~ 190 (513)
.|.||||+|+..|+.+++++|++.+.. ++..+..|+||||+|+..|+
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~---------------------------------~~~~~~~g~t~L~~A~~~~~ 52 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGED---------------------------------VNRTLEGGRKPLHYAADCGQ 52 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTSCCTTSSCHHHHHHHTTC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCC---------------------------------cCccCCCCCcHHHHHHHcCC
Confidence 678999999999999999999976543 56778889999999999999
Q ss_pred HHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Q 010335 191 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265 (513)
Q Consensus 191 ~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g 265 (513)
.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|...+
T Consensus 53 ~~~v~~Ll~~g~~~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 53 LEILEFLLLKGADINAPDKH----------HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117 (123)
T ss_dssp HHHHHHHHTTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHH
T ss_pred HHHHHHHHHcCCCCCcCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHH
Confidence 99999999999999999976 999999999999999999999999999999999999999994433
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=5e-21 Score=188.58 Aligned_cols=196 Identities=21% Similarity=0.162 Sum_probs=141.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNY-CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG 123 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~-~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g 123 (513)
+.+.|+++...|+..+.+++...-........ .+.... ....+-..+++................++|+.|+..|
T Consensus 66 ~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 66 GTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp CGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 46788888888887776665433211111000 111111 1122222334333222111111113457899999999
Q ss_pred CHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHc---CCHHHHHHHHHc
Q 010335 124 HVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN---GYFDCVQLLLDL 200 (513)
Q Consensus 124 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~---g~~eiv~~Ll~~ 200 (513)
+.+.++.+++.+...... ..++..+..|.||||+|+.. |+.+++++|+++
T Consensus 142 d~~~~~~ll~~g~~~~~~---------------------------~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ 194 (278)
T 1dcq_A 142 DIFGLLQAYADGVDLTEK---------------------------IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194 (278)
T ss_dssp CHHHHHHHHHTTCCTTSB---------------------------CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH
T ss_pred ccHHHHHHHHhhcchhhh---------------------------ccccccccCCCCcchHHHHhcccchHHHHHHHHHC
Confidence 999999999876542111 01455678899999999999 899999999999
Q ss_pred CCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCCC
Q 010335 201 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAV 280 (513)
Q Consensus 201 Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~~ 280 (513)
|++++..|.. |.||||+|+..|+.++|++|+++|++++.+|.+|+||||+|+..|+.+++++|.+.+...
T Consensus 195 ga~in~~d~~----------g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 195 SGNLDKQTGK----------GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CSCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCCccccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999977 999999999999999999999999999999999999999999999999999998876544
Q ss_pred C
Q 010335 281 M 281 (513)
Q Consensus 281 ~ 281 (513)
.
T Consensus 265 ~ 265 (278)
T 1dcq_A 265 F 265 (278)
T ss_dssp C
T ss_pred C
Confidence 3
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=6.1e-21 Score=203.36 Aligned_cols=127 Identities=23% Similarity=0.261 Sum_probs=114.9
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCCC------CCCCChHHHHHHH---cCCHHHHHHHHhcCCCCCcccCCCCCcHH
Q 010335 46 NSPLHFAAAKGHNEIVALLLENGADVNSR------NYCGQTALMQACR---YGHWEVVQTLLLFRCNVTRADYLSGRTAL 116 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~------d~~g~TpLh~A~~---~g~~eiVk~LL~~ga~~~~~~~~~G~TpL 116 (513)
.+.||.|+..|++++|+.||+.|+++|.. |..|.||||+|+. .|+.++|++|+++|++++..+. .|+|||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~-~g~TpL 211 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA-DGNTAL 211 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCS-SSCCHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCC-CCCcHH
Confidence 46799999999999999999999999987 8899999999976 8999999999999999999886 899999
Q ss_pred HHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHH
Q 010335 117 HFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQL 196 (513)
Q Consensus 117 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~ 196 (513)
|+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~d~~g~tpl~~A~~~~~~~~~~~ 258 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRAL---------------------------------VGTVNEAGETALDIARKKHHKECEEL 258 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCC---------------------------------CSCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999988765 77888999999999999999999999
Q ss_pred HHHcCCCccc
Q 010335 197 LLDLHANVSA 206 (513)
Q Consensus 197 Ll~~Gadvn~ 206 (513)
|+++|++++.
T Consensus 259 Ll~~ga~~~~ 268 (497)
T 3lvq_E 259 LEQAQAGTFA 268 (497)
T ss_dssp HHHTCC----
T ss_pred HHHhCCCCCC
Confidence 9999999855
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=6.6e-21 Score=194.82 Aligned_cols=124 Identities=22% Similarity=0.202 Sum_probs=114.7
Q ss_pred cHHHHHHHHc-CCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335 11 GERLVSAARD-GDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89 (513)
Q Consensus 11 ~~~L~~Aa~~-G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g 89 (513)
+++||.|+.. |++++++.||+.|++++.......|.||||+|+..|+.++|++|+++|+++|.+|..|.||||+|+..|
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g 279 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 4689999999 999999999999999987664455699999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 010335 90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADF 135 (513)
Q Consensus 90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~ 135 (513)
+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|+..+
T Consensus 280 ~~~~v~~LL~~Gad~~~~d~-~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 280 HTGLACLFLKRGADLGARDS-EGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHCcCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999998886 9999999999999999999998654
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=1.5e-20 Score=185.10 Aligned_cols=127 Identities=22% Similarity=0.252 Sum_probs=116.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCccc----cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHH
Q 010335 12 ERLVSAARDGDFVEAKMLLDCNPCLAKY----STFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCGQTALMQ 84 (513)
Q Consensus 12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~----~~~~~g~TpLh~Aa~~---g~~eivk~LL~~Gadvn~~d~~g~TpLh~ 84 (513)
.+|+.|++.||++.++.+++.|.++... ..+..|.||||+|+.. |+.+++++|+++|+++|.+|..|.||||+
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~ 211 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY 211 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence 5799999999999999999999986533 2234469999999999 89999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCC
Q 010335 85 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV 139 (513)
Q Consensus 85 A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~ 139 (513)
|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+....
T Consensus 212 A~~~g~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 212 CCLTDNAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALSGRF 265 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCCCCCccC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999999999986 99999999999999999999998877543
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=8.4e-21 Score=194.06 Aligned_cols=161 Identities=24% Similarity=0.159 Sum_probs=107.3
Q ss_pred CcHHHHHHHc-CCHHHHHHHHHCCCCCCCCC--CCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHc
Q 010335 46 NSPLHFAAAK-GHNEIVALLLENGADVNSRN--YCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN 122 (513)
Q Consensus 46 ~TpLh~Aa~~-g~~eivk~LL~~Gadvn~~d--~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~ 122 (513)
.|+||+|+.. |++++|++||++|+++|..+ ..|.||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~-~G~TpLh~A~~~ 278 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS-AGRGPLHHATIL 278 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHH
T ss_pred CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHc
Confidence 4789999998 99999999999999999888 7899999999999999999999999999988775 889999999999
Q ss_pred CCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 010335 123 GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 202 (513)
Q Consensus 123 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Ga 202 (513)
|+.+++++|++.++. ++..|..|.||||+|+..|+.+++++|++.+.
T Consensus 279 g~~~~v~~LL~~Gad---------------------------------~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 279 GHTGLACLFLKRGAD---------------------------------LGARDSEGRDPLTIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp TCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHCcCC---------------------------------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 999999999877654 66778888999999999999999999987764
Q ss_pred CcccccccCCccccccCCCCchhHHHhhCCCH--HHHHHHHHCCCCC
Q 010335 203 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL--KCCQVLLSRGASR 247 (513)
Q Consensus 203 dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~--eivk~LL~~Gad~ 247 (513)
........ ...+.|+|+++...... +-.+.|..++.++
T Consensus 326 ~~~~~~~~-------~~~~~t~l~i~~~~~~~~~~~~ekl~r~~~~~ 365 (368)
T 3jue_A 326 REAEAAQG-------QAGDETYLDIFRDFSLMASDDPEKLSRRSHDL 365 (368)
T ss_dssp -----------------------------------------------
T ss_pred Cccccccc-------CCCCCCHHHHHHHHHhhcCCCHHHHHhcCCCc
Confidence 32211110 01267787776654432 2334444444443
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=2e-20 Score=199.45 Aligned_cols=138 Identities=25% Similarity=0.287 Sum_probs=115.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCCCcc------cCCCCCcHHHHHHH---cCCHHHHHHHHHccCCCCccccchhhh
Q 010335 78 GQTALMQACRYGHWEVVQTLLLFRCNVTRA------DYLSGRTALHFAAV---NGHVRCIRLVVADFVPSVPFEVMNTQI 148 (513)
Q Consensus 78 g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~------~~~~G~TpLh~A~~---~g~~~iv~~Ll~~~~~~~~~~~~~~~~ 148 (513)
..+.||.|+..|+.++|+.|++.|++++.. + ..|.||||+|+. .|+.+++++|++.+++
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~-~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~----------- 199 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQ-APEELVLHLAVKVANQASLPLVDFIIQNGGH----------- 199 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSC-CSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-----------
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccc-cccchHHHHHHHhcccccHHHHHHHHHcCCC-----------
Confidence 447899999999999999999999999866 4 489999999976 8999999999988765
Q ss_pred cccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHH
Q 010335 149 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 228 (513)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A 228 (513)
++..|..|+||||+|+.+|+.++|++|+++|++++..|.. |.||||+|
T Consensus 200 ----------------------vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~----------g~tpl~~A 247 (497)
T 3lvq_E 200 ----------------------LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA----------GETALDIA 247 (497)
T ss_dssp ----------------------TTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTT----------CCCHHHHH
T ss_pred ----------------------CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHH
Confidence 7888999999999999999999999999999999999977 99999999
Q ss_pred hhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Q 010335 229 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265 (513)
Q Consensus 229 a~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g 265 (513)
+..|+.+++++|+++|++++. +|+|++..++
T Consensus 248 ~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~~~ 278 (497)
T 3lvq_E 248 RKKHHKECEELLEQAQAGTFA------FPLHVDYSWV 278 (497)
T ss_dssp HHTTCHHHHHHHHHTCC--------------------
T ss_pred HHcCCHHHHHHHHHhCCCCCC------Ccceeecccc
Confidence 999999999999999999876 5777776544
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=3.6e-20 Score=150.71 Aligned_cols=91 Identities=47% Similarity=0.684 Sum_probs=81.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGH 80 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCC
Confidence 48999999999999999999999999999999999999999999999999999999999988875 89999999999999
Q ss_pred HHHHHHHHHccC
Q 010335 125 VRCIRLVVADFV 136 (513)
Q Consensus 125 ~~iv~~Ll~~~~ 136 (513)
.+++++|++.++
T Consensus 81 ~~~~~~Ll~~ga 92 (93)
T 1n0q_A 81 LEVVKLLLEAGA 92 (93)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999987764
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=5.1e-20 Score=149.82 Aligned_cols=91 Identities=40% Similarity=0.533 Sum_probs=85.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCc
Q 010335 177 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 256 (513)
Q Consensus 177 ~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~T 256 (513)
+|+||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|.+|+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t 70 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 70 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence 4889999999999999999999999999999976 999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccchhhhcCCCC
Q 010335 257 PLDVARMWGRHWLEPLLAPSS 277 (513)
Q Consensus 257 pL~~A~~~g~~~iv~lL~~~~ 277 (513)
|||+|+..|+.+++++|.+.+
T Consensus 71 ~l~~A~~~~~~~~~~~Ll~~g 91 (93)
T 1n0q_A 71 PLHLAARNGHLEVVKLLLEAG 91 (93)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999999887654
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=2.2e-19 Score=151.83 Aligned_cols=106 Identities=33% Similarity=0.397 Sum_probs=87.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcC
Q 010335 110 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 189 (513)
Q Consensus 110 ~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g 189 (513)
.+|+||||+|+..|+.+++++|++.+.. ++..|..|.||||+|+..|
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~d~~g~t~L~~A~~~~ 53 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLSKGAD---------------------------------VNARSKDGNTPLHLAAKNG 53 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTTTTCC---------------------------------SSCCCSSSCCTTHHHHTTT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHcC
Confidence 3688888888888888888888765433 5667778889999999999
Q ss_pred CHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHH
Q 010335 190 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 258 (513)
Q Consensus 190 ~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL 258 (513)
+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.++..|.+|-
T Consensus 54 ~~~~~~~Ll~~g~~~~~~d~~----------g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 54 HAEIVKLLLAKGADVNARSKD----------GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp CHHHHHHHTTTTCCTTCCCTT----------CCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred cHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 999999999999998888866 88999999999999999999999999998888888874
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.76 E-value=6.1e-19 Score=149.04 Aligned_cols=109 Identities=36% Similarity=0.444 Sum_probs=75.4
Q ss_pred CCCCCCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHH
Q 010335 4 SFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALM 83 (513)
Q Consensus 4 ~~g~s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh 83 (513)
.+.-..+.++||.|++.|+++++++|++.+++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~ 80 (115)
T 2l6b_A 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH 80 (115)
T ss_dssp -CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSS--SCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 344455566777777777777777777777766554433 367777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCcccCCCCCcH
Q 010335 84 QACRYGHWEVVQTLLLFRCNVTRADYLSGRTA 115 (513)
Q Consensus 84 ~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~Tp 115 (513)
+|+..|+.+++++|+++|++++..+. .|.+|
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~-~~~~~ 111 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGADVNARSW-GSSHH 111 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSSSHHHHSC-CCC--
T ss_pred HHHHCCCHHHHHHHHHcCCCCCcCCc-ccccc
Confidence 77777777777777777777776664 55554
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.73 E-value=4.8e-18 Score=142.78 Aligned_cols=94 Identities=31% Similarity=0.308 Sum_probs=85.8
Q ss_pred cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCc
Q 010335 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 250 (513)
Q Consensus 171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~ 250 (513)
....+.+|.|+||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~----------g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~ 86 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN----------GSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence 5667788999999999999999999999999999999866 999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHcCccchhhhcC
Q 010335 251 NCNGWLPLDVARMWGRHWLEPLLA 274 (513)
Q Consensus 251 d~~G~TpL~~A~~~g~~~iv~lL~ 274 (513)
|..|+||||+|+..|+.+++++|.
T Consensus 87 d~~g~tpl~~A~~~~~~~~~~~L~ 110 (110)
T 2zgd_A 87 DKFGKTAFDISIDNGNEDLAEILQ 110 (110)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHC
T ss_pred ccCCCcHHHHHHHcCCHHHHHHhC
Confidence 999999999999999999998873
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.72 E-value=2e-17 Score=138.96 Aligned_cols=89 Identities=35% Similarity=0.436 Sum_probs=82.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHH
Q 010335 42 FGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV 121 (513)
Q Consensus 42 ~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~ 121 (513)
+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+.
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~ 99 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK-FGKTAFDISID 99 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-CCCcHHHHHHH
Confidence 33458999999999999999999999999999999999999999999999999999999999998885 89999999999
Q ss_pred cCCHHHHHHH
Q 010335 122 NGHVRCIRLV 131 (513)
Q Consensus 122 ~g~~~iv~~L 131 (513)
.|+.+++++|
T Consensus 100 ~~~~~~~~~L 109 (110)
T 2zgd_A 100 NGNEDLAEIL 109 (110)
T ss_dssp HTCHHHHHHH
T ss_pred cCCHHHHHHh
Confidence 9999999887
No 115
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.53 E-value=4.9e-08 Score=72.93 Aligned_cols=55 Identities=27% Similarity=0.543 Sum_probs=45.6
Q ss_pred CccccccchhhhcccceEEee--CCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 313 SSDDADTCAVCLERACTVAAE--GCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v~~~--~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
+..+...|.||+++..+.++. ||||. +|..|+..+.... ..||+||..|..++++
T Consensus 4 ~~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------------~~CPiCR~~i~~~i~i 61 (64)
T 2vje_A 4 PLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN------------KPCPVCRQPIQMIVLT 61 (64)
T ss_dssp -CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT------------CCCTTTCCCCCEEEEE
T ss_pred CCCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC------------CcCCCcCcchhceEee
Confidence 455678999999999999887 99999 8999999886432 2599999999988764
No 116
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.41 E-value=1.5e-07 Score=70.01 Aligned_cols=53 Identities=25% Similarity=0.515 Sum_probs=43.8
Q ss_pred cccccchhhhcccceEEee--CCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 315 DDADTCAVCLERACTVAAE--GCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~--~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
.....|.||++...+.++. ||||. +|..|+..+-... ..||+||..|..++++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------------~~CPiCR~~i~~~i~i 60 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG------------ASCPICKKEIQLVIKV 60 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT------------CBCTTTCCBCCEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC------------CcCCCcCchhhceEEE
Confidence 4567899999998877666 99999 8999999886442 2599999999988765
No 117
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=3.5e-07 Score=69.13 Aligned_cols=52 Identities=31% Similarity=0.749 Sum_probs=44.3
Q ss_pred ccccccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335 314 SDDADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 381 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 381 (513)
..+...|.||++...++++.||||. +|..|+..+ ..||+||..|..++++-.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----------------~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----------------QQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----------------SSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----------------CCCCCCCcchhceEEeec
Confidence 3456889999999999999999999 999999743 149999999999887643
No 118
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.15 E-value=2.3e-07 Score=79.82 Aligned_cols=97 Identities=21% Similarity=0.520 Sum_probs=60.5
Q ss_pred ccccchhhhcccceE-------EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC------
Q 010335 316 DADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS------ 382 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v-------~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~------ 382 (513)
+...|.||++..... +..+|||.+|..|...+..... .||+||..+..-...+-.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~------------~CP~Cr~~~~~~~l~~l~i~~~~~ 73 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN------------TCPTCRKKINHKRYHPIYIGSGTV 73 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS------------BCTTTCCBCTTTCEEECBCSSSSC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC------------CCCCCCCcCccccccccccCCCCC
Confidence 457899999876554 8889999999999988864422 477777665422111110
Q ss_pred --Cc--ccccc-----------ccccccCccccCCCCCCCCCCCCCchhhccccccc
Q 010335 383 --PV--KDIKQ-----------PLSLGLCTPCMLHTRDAECESPACAPEIRKNRVAL 424 (513)
Q Consensus 383 --~~--~~~~~-----------~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (513)
++ .++.. .=.-.||..|....-+....||+||.++.++.+.+
T Consensus 74 ~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 130 (133)
T ss_dssp BCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEE
T ss_pred CCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhccee
Confidence 00 00000 00124666675544445679999999998876543
No 119
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.02 E-value=2.6e-06 Score=66.31 Aligned_cols=49 Identities=31% Similarity=0.644 Sum_probs=42.0
Q ss_pred ccccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecC
Q 010335 316 DADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP 380 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~ 380 (513)
+...|.||++...++++.||||. +|..|+..+- .||+||..|..++++-
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----------------~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----------------SCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----------------BCTTTCCBCCEEEECB
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----------------cCCCCCchhhCeEEEE
Confidence 34689999999999999999999 9999995441 4999999999987653
No 120
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.96 E-value=4.4e-06 Score=64.18 Aligned_cols=48 Identities=27% Similarity=0.669 Sum_probs=41.1
Q ss_pred ccccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 316 DADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
+...|.||++...+.+..||||. +|..|...+ ..||+||..|...+++
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i 71 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----------------DKCPMCYTVITFKQKI 71 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----------------SBCTTTCCBCSEEEEC
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----------------ccCCCcCcCccCcEEE
Confidence 45689999999999999999999 999998554 1499999999887654
No 121
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=5.7e-06 Score=63.69 Aligned_cols=47 Identities=28% Similarity=0.664 Sum_probs=39.4
Q ss_pred cccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 317 ADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 317 ~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
...|.||++...+.+..||||. +|..|...+ ..||+||..|...+++
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i 72 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----------------DKCPMCYTVITFKQKI 72 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----------------SBCTTTCCBCCCCCBC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----------------CCCccCCceecCcEEE
Confidence 4679999999999999999999 999998432 2599999999876543
No 122
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.78 E-value=4.2e-05 Score=59.18 Aligned_cols=57 Identities=25% Similarity=0.500 Sum_probs=42.2
Q ss_pred ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
..+...|.||++.....+..+|||.+|..|...+...... ...+...||+||..+..
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~-----~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVT-----SMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSS-----SCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhccc-----CCCCCCcCCCCCCcCCH
Confidence 3456789999998888777899999999999766433211 11235579999998764
No 123
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1.8e-05 Score=60.02 Aligned_cols=50 Identities=28% Similarity=0.582 Sum_probs=40.8
Q ss_pred ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
..+...|.||++.....+..+|||.+|..|...+.... ..||+||..|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG------------KRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS------------SBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC------------CcCcCcCchhCH
Confidence 34567899999999988888999999999998765432 259999998763
No 124
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.70 E-value=1.9e-05 Score=59.25 Aligned_cols=53 Identities=30% Similarity=0.625 Sum_probs=42.5
Q ss_pred ccccchhhhcccce-EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecC
Q 010335 316 DADTCAVCLERACT-VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP 380 (513)
Q Consensus 316 ~~~~C~iC~~~~~~-v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~ 380 (513)
....|.||++.... +...+|||.+|..|...+.... ..||+||..+..+....
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN------------PTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS------------CSTTTTCCCCCCEECCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc------------CcCcCCChhhHhhhhcc
Confidence 45789999998876 5888999999999998876442 25999999988765543
No 125
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.68 E-value=4.6e-05 Score=59.66 Aligned_cols=55 Identities=27% Similarity=0.587 Sum_probs=42.3
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
.+...|.||++.....+..+|||.+|..|...+...... ..+...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~------~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRN------TDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBC------TTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccC------CCCCCCCCCCCCcCCH
Confidence 456789999998888778899999999999887655210 1134579999988764
No 126
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.68 E-value=2.6e-05 Score=55.74 Aligned_cols=47 Identities=28% Similarity=0.543 Sum_probs=38.3
Q ss_pred ccccchhhhcccce----EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 316 DADTCAVCLERACT----VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 316 ~~~~C~iC~~~~~~----v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
....|.||++...+ +...+|||.+|..|...+.... ..||+||..|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG------------YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT------------CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC------------CcCCCCCCcCC
Confidence 45789999987644 7888999999999998886553 25999998764
No 127
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=3.8e-05 Score=58.42 Aligned_cols=51 Identities=25% Similarity=0.724 Sum_probs=40.8
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
.+...|.||++.....+..+|||.+|..|...+.... .....||+||..+.
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETS---------CGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSS---------CSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcC---------CCCCCCCCCCCcCC
Confidence 4567899999998888888999999999998886421 12346999998864
No 128
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.61 E-value=3.6e-05 Score=66.67 Aligned_cols=48 Identities=29% Similarity=0.634 Sum_probs=39.5
Q ss_pred cccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335 317 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 376 (513)
Q Consensus 317 ~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~ 376 (513)
...|.||++...+.+..+|||.+|..|...+.... ..||+||..|...
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK------------IECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC------------SBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHcC------------CcCCCCCCcCCCC
Confidence 34699999999999999999999999998775332 2499999988654
No 129
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.59 E-value=4.4e-05 Score=54.58 Aligned_cols=48 Identities=33% Similarity=0.660 Sum_probs=36.6
Q ss_pred cccccchhhhcccce---EEeeC-CCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 315 DDADTCAVCLERACT---VAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~---v~~~~-Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
++...|.||++.... +...+ |||.+|..|...+.... ..||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~------------~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH------------STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC------------CSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC------------CcCcCCCCEeE
Confidence 456789999987665 56666 99999999997775331 25999998763
No 130
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=7.1e-05 Score=58.60 Aligned_cols=62 Identities=24% Similarity=0.529 Sum_probs=44.3
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 382 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~ 382 (513)
.+...|.||++.....+..+|||.+|..|...+...... ..+...||+||..+..-...+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~------~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSML------DKGESSCPVCRISYQPENIRPNR 78 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHH------TTSCCCCTTTCCSSCSSSCCCSC
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhc------CCCCCcCCCCCCccCHHhcCccH
Confidence 456789999999888777899999999999887644100 01234699999987753333333
No 131
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=4e-05 Score=58.52 Aligned_cols=55 Identities=27% Similarity=0.659 Sum_probs=43.1
Q ss_pred cccccchhhhcccc---eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335 315 DDADTCAVCLERAC---TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 381 (513)
Q Consensus 315 ~~~~~C~iC~~~~~---~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 381 (513)
.....|.||++... .+...+|||.+|..|...+..... .||+||..|..+..+++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~------------~CP~Cr~~~~~~~~~~~ 70 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK------------VCPLCNMPVLQLAQLSG 70 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS------------BCTTTCCBCSSCCSCCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC------------cCCCcCcccccccccCC
Confidence 45678999998753 345569999999999988865531 49999999988777665
No 132
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=7e-05 Score=56.89 Aligned_cols=51 Identities=18% Similarity=0.383 Sum_probs=40.3
Q ss_pred ccccccchhhhcccceEEee-CCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335 314 SDDADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 376 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~~-~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~ 376 (513)
..+...|.||++...+.+.. +|||.+|..|...+.... ..||+||..+..-
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS------------NRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC------------SSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC------------CcCCCcCcccCcc
Confidence 34567899999988766655 999999999998886542 2599999887654
No 133
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=3.7e-05 Score=57.71 Aligned_cols=49 Identities=22% Similarity=0.650 Sum_probs=39.1
Q ss_pred ccccccchhhhcccceE-------EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 314 SDDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v-------~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
..+...|.||++..... +..+|||.+|..|...+.... ..||+||..|.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC------------SSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC------------CCCCCCCCccC
Confidence 45678899999876553 778999999999998886542 25999998865
No 134
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.54 E-value=9.6e-05 Score=55.52 Aligned_cols=51 Identities=29% Similarity=0.557 Sum_probs=39.6
Q ss_pred ccccccchhhhccc---ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335 314 SDDADTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 376 (513)
Q Consensus 314 ~~~~~~C~iC~~~~---~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~ 376 (513)
......|.||++.. ..+...+|||.+|..|...+..... .||+||..|...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~------------~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK------------KCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS------------BCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC------------CCcCcCccccCc
Confidence 34567899998754 4567789999999999988865521 499999887653
No 135
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.50 E-value=5.6e-05 Score=58.34 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=46.1
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCCCcc
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVK 385 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~~~~ 385 (513)
.+...|.||++...+.+..+|||.+|..|...+... +...||+||..+..-...|...++
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~-----------~~~~CP~C~~~~~~~~l~~n~~l~ 65 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-----------GHKTCPKSQETLLHAGLTPNYVLK 65 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT-----------TCCBCTTTCCBCSSCCCEECTTTH
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH-----------CcCCCCCCcCCCChhhCccCHHHH
Confidence 346789999999888888899999999999888743 123699999988755555554443
No 136
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=8.5e-05 Score=57.83 Aligned_cols=48 Identities=23% Similarity=0.481 Sum_probs=40.2
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
.....|.||++.....+..+|||.+|..|...+.... ..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT------------PRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC------------SBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC------------CcCCCcCcccc
Confidence 3456899999998888889999999999998886542 25999999886
No 137
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.48 E-value=4e-05 Score=57.92 Aligned_cols=50 Identities=22% Similarity=0.636 Sum_probs=39.5
Q ss_pred CccccccchhhhcccceE-------EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 313 SSDDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v-------~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
...+...|.||++..... ...+|||.+|..|...+.... ..||+||..+.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~ 62 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKIN 62 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCCBCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC------------CCCCCCCCccC
Confidence 345678899999876553 788999999999998886542 25999998875
No 138
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=3.9e-05 Score=57.91 Aligned_cols=50 Identities=22% Similarity=0.672 Sum_probs=40.2
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceee
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT 377 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~ 377 (513)
.+...|.||++.... +..+|||.+|..|...+... ...||+||..|....
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~------------~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR------------HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC------------CSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC------------cCcCCCcCCcccCCC
Confidence 456889999999888 78899999999999776432 235999998877543
No 139
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=6e-05 Score=56.19 Aligned_cols=49 Identities=31% Similarity=0.682 Sum_probs=39.5
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
.+...|.||++.....+..+|||.+|..|...+... ....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS-----------SSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT-----------SSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh-----------CcCCCCCCCcCCC
Confidence 456789999998887777899999999999888642 1235999998865
No 140
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.45 E-value=7.4e-05 Score=59.65 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=38.5
Q ss_pred ccccccchhhhcccce---EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 314 SDDADTCAVCLERACT---VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~---v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
......|.||++.... +...+|||.+|..|...+.... ..||+||..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~------------~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS------------GTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT------------CBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC------------CcCcCcCccCC
Confidence 3456789999987655 7778999999999998886442 25999998764
No 141
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.45 E-value=7.6e-05 Score=57.72 Aligned_cols=51 Identities=22% Similarity=0.494 Sum_probs=37.4
Q ss_pred ccccccchhhhccc--ceEEeeC--CCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 314 SDDADTCAVCLERA--CTVAAEG--CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 314 ~~~~~~C~iC~~~~--~~v~~~~--Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
..+...|.||++.. .+..+.+ |||.+|..|...+... +...||+||..+..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-----------~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-----------ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-----------SCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-----------CCCCCCCCCCccCC
Confidence 34567899999965 2345555 9999999999887532 12369999988765
No 142
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=0.00013 Score=57.55 Aligned_cols=52 Identities=21% Similarity=0.553 Sum_probs=41.0
Q ss_pred ccccccchhhhcccce----EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 314 SDDADTCAVCLERACT----VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~----v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
..+...|.||++.... ....+|||.+|..|...+..... ....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI---------NGVRCPFCSKITR 67 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS---------SCBCCTTTCCCBC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC---------CCcCCCCCCCccc
Confidence 3456789999998877 77789999999999998875531 2346999998754
No 143
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.41 E-value=6.8e-05 Score=55.70 Aligned_cols=48 Identities=23% Similarity=0.514 Sum_probs=35.2
Q ss_pred cccchhhhc-ccceE----EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 317 ADTCAVCLE-RACTV----AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 317 ~~~C~iC~~-~~~~v----~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
...|.||++ ..... +..+|||.+|..|...+.... ...||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-----------AGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-----------SSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-----------CCcCCCCCCcccc
Confidence 467999999 33222 567999999999998885431 2369999988753
No 144
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.39 E-value=0.00015 Score=57.91 Aligned_cols=51 Identities=20% Similarity=0.443 Sum_probs=40.4
Q ss_pred ccccccchhhhcccceEEeeC-CCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 314 SDDADTCAVCLERACTVAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~~~-Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
..+...|.||++...+.+..+ |||.+|..|...+.... +...||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----------~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES----------DEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHC----------TTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhc----------CCCcCcCCCCcCC
Confidence 345678999999888888889 99999999998776432 1236999998864
No 145
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.38 E-value=0.00021 Score=55.07 Aligned_cols=55 Identities=22% Similarity=0.452 Sum_probs=40.8
Q ss_pred ccccccchhhhccc---ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecC
Q 010335 314 SDDADTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP 380 (513)
Q Consensus 314 ~~~~~~C~iC~~~~---~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~ 380 (513)
......|.||++.. ..+...+|||.+|..|...+.... ..||+||..+..-...+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH------------DSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT------------CSCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC------------CcCcCcCCccCCcccCC
Confidence 34568999998764 345667999999999998886432 25999999887654443
No 146
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.38 E-value=7.4e-05 Score=57.22 Aligned_cols=49 Identities=24% Similarity=0.552 Sum_probs=38.0
Q ss_pred cccccchhhhcccc---eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 315 DDADTCAVCLERAC---TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 315 ~~~~~C~iC~~~~~---~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
.....|.||++... .+...+|||.+|..|...+.... ..||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~------------~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN------------RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC------------SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC------------CcCcCcCCcCCC
Confidence 45678999997543 45778999999999998886553 159999988653
No 147
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.35 E-value=0.00013 Score=55.73 Aligned_cols=50 Identities=20% Similarity=0.464 Sum_probs=40.2
Q ss_pred cccccchhhhcccceEEeeC-CCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 315 DDADTCAVCLERACTVAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~-Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
.+...|.||++...+.+..+ |||.+|..|...+.... +...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----------~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES----------DEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS----------SSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc----------CCCcCCCCCCcCC
Confidence 45678999999988888889 99999999998887542 1235999998643
No 148
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.33 E-value=7.3e-05 Score=55.10 Aligned_cols=48 Identities=23% Similarity=0.644 Sum_probs=37.5
Q ss_pred ccccchhhhcccce-------EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 316 DADTCAVCLERACT-------VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 316 ~~~~C~iC~~~~~~-------v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
+...|.||++.... +...+|||.+|..|...+.... ..||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC------------SBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC------------CCCCCCCccCCc
Confidence 34679999987654 3778999999999998886542 159999988763
No 149
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00011 Score=55.22 Aligned_cols=52 Identities=25% Similarity=0.482 Sum_probs=42.8
Q ss_pred CCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccccccCC
Q 010335 363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSD 428 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (513)
...|+||.......+.+|+ | +.+|..|+. ....||+||.+|......+.++|
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH----------~~~C~~C~~----~~~~CP~CR~~i~~~~~i~~~~s 67 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRH----------TCLCDGCVK----YFQQCPMCRQFVQESFALSGPSS 67 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTB----------CCSCTTHHH----HCSSCTTTCCCCCCEECCCSSCC
T ss_pred CCCCCCcCcCCCCEEEECCCC----------hhhhHHHHh----cCCCCCCCCcchhceEEeecCCC
Confidence 4579999999999999999 6 139999966 35899999999999876666543
No 150
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.29 E-value=0.00013 Score=61.75 Aligned_cols=49 Identities=22% Similarity=0.546 Sum_probs=40.0
Q ss_pred ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
+...|.||++...+.+..+|||.+|..|........ ...||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ-----------VFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT-----------CCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC-----------cCCCCCCCccCCC
Confidence 346799999999888888999999999998776531 2259999998865
No 151
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.28 E-value=0.00013 Score=72.90 Aligned_cols=49 Identities=33% Similarity=0.710 Sum_probs=42.4
Q ss_pred ccccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecC
Q 010335 316 DADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP 380 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~ 380 (513)
+...|.||++...+.+..||||. +|..|+..+ ..||+||..|...+++.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----------------~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----------------RKCPICRGIIKGTVRTF 343 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----------------SBCTTTCCBCCEEEECC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----------------CcCCCCCCCccCeEEee
Confidence 34789999999999999999999 999999655 14999999999988764
No 152
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.23 E-value=0.00019 Score=72.23 Aligned_cols=52 Identities=27% Similarity=0.618 Sum_probs=43.1
Q ss_pred ccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecC
Q 010335 318 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP 380 (513)
Q Consensus 318 ~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~ 380 (513)
..|.||++.....+..+|||.+|..|...+.... ...||+||..|.....+.
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~-----------~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE-----------GQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT-----------CSBCTTTCCBCCEEEECS
T ss_pred CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC-----------CCCCCCCCCccCCceeEe
Confidence 6899999999999999999999999998876521 225999999988765543
No 153
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.22 E-value=0.00013 Score=60.42 Aligned_cols=52 Identities=31% Similarity=0.687 Sum_probs=41.0
Q ss_pred ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335 316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 376 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~ 376 (513)
....|.||++.....+..+|||.+|..|...+..... +...||+||..+..-
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK---------GPSQCPLCKNDITKR 71 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS---------SSCCCTTTSCCCCTT
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC---------CCCCCcCCCCcCCHh
Confidence 3467999999888877789999999999988875431 224699999887643
No 154
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.18 E-value=0.0002 Score=62.88 Aligned_cols=50 Identities=24% Similarity=0.577 Sum_probs=41.0
Q ss_pred ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335 316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 376 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~ 376 (513)
+...|.||++...+.+..+|||.+|..|...+.... ...||+||..+..-
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ-----------VFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT-----------CCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC-----------CCcCCCCCccCCCC
Confidence 346899999999888889999999999998887542 22599999987754
No 155
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.17 E-value=0.00012 Score=61.05 Aligned_cols=50 Identities=28% Similarity=0.640 Sum_probs=39.9
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
.+...|.||++.....+..+|||.+|..|...+... +...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK-----------ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT-----------TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH-----------CcCCCCCCCcccCc
Confidence 446789999999888888899999999999666432 12369999999875
No 156
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.17 E-value=0.00018 Score=58.51 Aligned_cols=50 Identities=20% Similarity=0.526 Sum_probs=40.9
Q ss_pred cccccchhhhcccceEEe-eCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 315 DDADTCAVCLERACTVAA-EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~-~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
.+...|.||++.....+. .+|||.+|..|...+..... ..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-----------AQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC-----------SBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc-----------CCCCCCCCcCCH
Confidence 356789999999888877 99999999999988875531 259999998754
No 157
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.16 E-value=9.1e-05 Score=53.31 Aligned_cols=45 Identities=24% Similarity=0.499 Sum_probs=36.1
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
.+...|.||++...+....+|||.+|..|... ....||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---------------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---------------SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---------------SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---------------CCCCCCcCCcEee
Confidence 34567999999988888899999999999743 1235999998864
No 158
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.11 E-value=0.00028 Score=57.12 Aligned_cols=48 Identities=25% Similarity=0.562 Sum_probs=38.9
Q ss_pred ccccchhhhcccceEEee-CCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 316 DADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~-~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
+...|.||++...+.+.. +|||.+|..|...+.... ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK------------TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC------------CBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC------------CCCCCCCCcCCh
Confidence 456899999988877666 999999999998886432 259999998765
No 159
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.10 E-value=0.0002 Score=54.68 Aligned_cols=47 Identities=21% Similarity=0.429 Sum_probs=39.8
Q ss_pred CCCCCccccceeeecCC-CCccccccccccc-cCccccCCCCCCCCCCCCCchhhccccccccc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLG-LCTPCMLHTRDAECESPACAPEIRKNRVALVS 426 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (513)
.|++|.......+.+|+ | . +|..|.... ..||+||.+|.+..-.++|
T Consensus 26 ~C~iC~~~~~~~~~~pCgH-----------~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 26 LCKICMDRNIAIVFVPCGH-----------LVTCKQCAEAV----DKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp BCTTTSSSBCCEEEETTCC-----------BCCCHHHHTTC----SBCTTTCCBCSEEEECBC-
T ss_pred CCCCCCCCCCCEEEcCCCC-----------hhHHHHhhhcC----ccCCCcCcCccCcEEEeeC
Confidence 59999999999999999 7 6 999996654 8999999999987655543
No 160
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.09 E-value=0.00019 Score=54.30 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=42.3
Q ss_pred CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccc
Q 010335 362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVA 423 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~ 423 (513)
....||||...+..-+.+|+ | .||..|....-.....||+||.+|....+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH-----------~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKH-----------VFCYLCVKGASWLGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTE-----------EEEHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred CCCCCccCCcccCCCEEccCCC-----------HHHHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence 34569999999999888888 8 899999877666668999999999876543
No 161
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.07 E-value=0.0003 Score=62.73 Aligned_cols=49 Identities=27% Similarity=0.698 Sum_probs=39.8
Q ss_pred ccccchhhhcccceEEee-CCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 316 DADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~-~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
....|.||++...+.+.. +|||.+|..|...+.... ...||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG-----------NKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT-----------CCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC-----------cCCCCCCCCcCCC
Confidence 456899999988887666 999999999998887541 2359999998854
No 162
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.05 E-value=0.00037 Score=57.39 Aligned_cols=49 Identities=20% Similarity=0.507 Sum_probs=40.2
Q ss_pred cccccchhhhcccceEEee-CCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 315 DDADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~-~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
.+...|.||++...+.+.. +|||.+|..|........ ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS------------KYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC------------SBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC------------CcCcCCCccccc
Confidence 3567899999988888776 999999999998886442 259999988765
No 163
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.96 E-value=0.00052 Score=50.38 Aligned_cols=47 Identities=28% Similarity=0.752 Sum_probs=37.1
Q ss_pred ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCC
Q 010335 314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC 369 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~C 369 (513)
..+...|.||++.....+..+|||.+|..|...+..... ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC---------GFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS---------SCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC---------CCCcCcCC
Confidence 345678999999988888889999999999998875311 12369998
No 164
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.96 E-value=0.00018 Score=55.12 Aligned_cols=47 Identities=21% Similarity=0.424 Sum_probs=39.6
Q ss_pred CCCCCccccceeeecCC-CCccccccccccc-cCccccCCCCCCCCCCCCCchhhccccccccc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLG-LCTPCMLHTRDAECESPACAPEIRKNRVALVS 426 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (513)
.||||.......+.+|+ | . +|..|.. ....||+||.+|..+...++|
T Consensus 27 ~C~IC~~~~~~~~~~pCgH-----------~~~C~~C~~----~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 27 LCKICMDRNIAIVFVPCGH-----------LVTCKQCAE----AVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp SCSSSCSSCCCBCCSSSCC-----------CCBCHHHHH----HCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCcCCCCCCCEEEecCCC-----------HHHHHHHhh----CCCCCccCCceecCcEEEecC
Confidence 59999999999999999 7 6 9999963 357999999999987666553
No 165
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=0.00055 Score=53.24 Aligned_cols=47 Identities=34% Similarity=0.723 Sum_probs=33.9
Q ss_pred ccccchhhhcccce--------------E-EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 316 DADTCAVCLERACT--------------V-AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 316 ~~~~C~iC~~~~~~--------------v-~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
+.+.|.||++.... + ...+|||.++..|......... .||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~------------~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN------------RCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC------------BCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC------------CCCCcCCCcc
Confidence 45667777765532 3 4446999999999988865431 5999998864
No 166
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.91 E-value=0.00059 Score=56.67 Aligned_cols=54 Identities=24% Similarity=0.581 Sum_probs=38.4
Q ss_pred ccccchhhhcccc------------------eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335 316 DADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 376 (513)
Q Consensus 316 ~~~~C~iC~~~~~------------------~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~ 376 (513)
..+.|.||++... .+...+|||.+|..|...+...... .....||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~-------~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK-------DGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC-------SSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC-------CCCCcCCCCCCccCCC
Confidence 3468999998763 3347899999999999988743110 1233699999877644
No 167
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.90 E-value=0.00055 Score=57.34 Aligned_cols=58 Identities=17% Similarity=0.446 Sum_probs=44.4
Q ss_pred CccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335 313 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 381 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 381 (513)
...+...|.||++.....+..+|||.+|..|...+..... ..||+||..+..-...|.
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~~~~~~~ 71 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-----------HKCPVDNEILLENQLFPD 71 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-----------SBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC-----------CCCCCCCCCcCHHhcccC
Confidence 3445678999999888888889999999999988765421 159999998876443444
No 168
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.89 E-value=0.00041 Score=53.73 Aligned_cols=47 Identities=17% Similarity=0.418 Sum_probs=40.0
Q ss_pred CCCCCccccceeeecCC-CCccccccccccc-cCccccCCCCCCCCCCCCCchhhccccccccc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLG-LCTPCMLHTRDAECESPACAPEIRKNRVALVS 426 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (513)
.|++|.......+.+|+ | . +|..|+... ..||+||.+|......+++
T Consensus 20 ~C~IC~~~~~~~v~~pCgH-----------~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 20 LCMVCCEEEINSTFCPCGH-----------TVCCESCAAQL----QSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp BCTTTSSSBCCEEEETTCB-----------CCBCHHHHTTC----SBCTTTCCBCCEEEECBCT
T ss_pred EeEEeCcccCcEEEECCCC-----------HHHHHHHHHhc----CcCCCCCchhhCeEEEEeC
Confidence 59999999999999999 6 5 999996644 5999999999998666655
No 169
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.84 E-value=0.0012 Score=47.33 Aligned_cols=47 Identities=28% Similarity=0.663 Sum_probs=36.4
Q ss_pred ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCC
Q 010335 314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC 369 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~C 369 (513)
..+...|.||++.....+..+|||.+|..|...+..... ....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLE---------RDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSC---------CSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcC---------CCCCCCCC
Confidence 345678999999988888889999999999988853211 23369998
No 170
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.81 E-value=0.00037 Score=52.36 Aligned_cols=52 Identities=19% Similarity=0.417 Sum_probs=42.3
Q ss_pred CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccccc
Q 010335 362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALV 425 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (513)
....||||...+.. +.+|+ | .||..|.....+....||+||.++......++
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAH-----------SFCQKCIDKWSDRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTE-----------EECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCC-----------cccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence 45579999999988 77777 8 89999988776678899999999987654443
No 171
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.74 E-value=0.00012 Score=54.14 Aligned_cols=51 Identities=24% Similarity=0.452 Sum_probs=39.2
Q ss_pred CCCCCccccceeeec--CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccccc
Q 010335 365 PCPLCRHGIVSFTKL--PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALV 425 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~--~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (513)
.|++|.......+.+ |+ | +.+|..|+....+....||+||.+|...+.++.
T Consensus 9 ~C~IC~~~~~~~~~~~~pCgH----------~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 62 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGRTGH----------LVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62 (63)
T ss_dssp BCTTTSSSBSCEEEEETTEEE----------EEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred CCcccCCcCCCeEEEecCCCC----------HhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence 599999887665555 88 6 138999987766556799999999988765553
No 172
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.71 E-value=0.00015 Score=53.71 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=41.0
Q ss_pred CCCCCCccccceeeec--CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccccc
Q 010335 364 IPCPLCRHGIVSFTKL--PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALV 425 (513)
Q Consensus 364 ~~Cp~Cr~~i~~~~~~--~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (513)
..|++|.......+.+ |+ | +.+|..|+....+....||+||.+|...+.+++
T Consensus 9 ~~C~IC~~~~~~~~~~~~pCgH----------~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 63 (64)
T 2vje_A 9 EPCVICQGRPKNGCIVHGKTGH----------LMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 63 (64)
T ss_dssp SCCTTTSSSCSCEEEEETTEEE----------EEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred CCCCcCCCCCCCEEEECCCCCC----------hhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence 3699999988888776 88 7 138999987766666789999999987665554
No 173
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.71 E-value=0.0008 Score=56.09 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=40.6
Q ss_pred ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335 316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 376 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~ 376 (513)
+...|.||++...+.+..+|||.+|..|...+.... ...||+||..+..-
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVM-----------GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-----------CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC-----------cCcCCCCCCCCCHh
Confidence 356899999998888889999999999998886542 12599999987653
No 174
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.71 E-value=0.00015 Score=54.72 Aligned_cols=53 Identities=23% Similarity=0.653 Sum_probs=40.5
Q ss_pred CCCCCCCCCCcccccee-------eecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccc
Q 010335 360 PPGSIPCPLCRHGIVSF-------TKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVA 423 (513)
Q Consensus 360 ~~~~~~Cp~Cr~~i~~~-------~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~ 423 (513)
+.....||||...+..- +.+++ | .||..|....-+....||+||.++....+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGH-----------VFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSC-----------EEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCC-----------hHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 34556799999988764 56666 8 899999866544567999999999876543
No 175
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.67 E-value=0.00039 Score=52.64 Aligned_cols=53 Identities=15% Similarity=0.397 Sum_probs=41.7
Q ss_pred CCCCCCCccccceeeec-CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccccccccc
Q 010335 363 SIPCPLCRHGIVSFTKL-PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVS 426 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (513)
...||||...+..-+.+ ++ | .||..|....-+....||+||.++..+......
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH-----------~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLH-----------TFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCC-----------EECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCChHHHCcCEECCCCC-----------HHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 45699999999877776 66 8 899999766554568999999999887654443
No 176
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.48 E-value=0.0009 Score=55.93 Aligned_cols=46 Identities=22% Similarity=0.488 Sum_probs=37.8
Q ss_pred ccccchhhhcccceEEee-CCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 316 DADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~-~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
+...|.||++.....+.. +|||.+|..|...+.. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--------------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--------------TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--------------TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--------------CCCcCCCCcCcc
Confidence 457899999998888887 9999999999977643 259999998743
No 177
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.44 E-value=0.00038 Score=51.99 Aligned_cols=51 Identities=22% Similarity=0.654 Sum_probs=38.7
Q ss_pred CCCCCCCCCCCcccccee-------eecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 359 GPPGSIPCPLCRHGIVSF-------TKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 359 ~~~~~~~Cp~Cr~~i~~~-------~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
.......||||...+..- +.+++ | .||..|....-+....||+||.+|..+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~r 69 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGH-----------VFCSQCLRDSLKNANTCPTCRKKINHK 69 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSC-----------EEEHHHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCC-----------hhcHHHHHHHHHcCCCCCCCCCccCcC
Confidence 334566799999988764 56666 8 899999766544567999999998753
No 178
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.39 E-value=0.0014 Score=46.54 Aligned_cols=43 Identities=19% Similarity=0.451 Sum_probs=35.6
Q ss_pred CCCCCCccccce---eeecC-C-CCccccccccccccCccccCCCCCCCCCCCCCchhh
Q 010335 364 IPCPLCRHGIVS---FTKLP-G-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEI 417 (513)
Q Consensus 364 ~~Cp~Cr~~i~~---~~~~~-~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~ 417 (513)
..||||...+.. .+.+| + + .||..|.....+....||+||.++
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H-----------~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGH-----------GFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCC-----------EECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CcCccCCccccCCCceEECCCCCC-----------cccHHHHHHHHHcCCcCcCCCCEe
Confidence 369999999877 67776 4 7 899999887777788999999876
No 179
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.36 E-value=0.002 Score=49.34 Aligned_cols=52 Identities=19% Similarity=0.505 Sum_probs=39.1
Q ss_pred CCCCCCCCccccc---eeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccccccc
Q 010335 362 GSIPCPLCRHGIV---SFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVAL 424 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~---~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (513)
....||||...+. .++.+|+ | .||..|....-+....||+||.++....+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNH-----------LFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSC-----------EEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCC-----------eecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 3457999988764 4455677 8 8999998766555679999999998765443
No 180
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.36 E-value=0.0011 Score=50.01 Aligned_cols=49 Identities=20% Similarity=0.550 Sum_probs=39.8
Q ss_pred CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCC---CCCCCCCCchhhcccc
Q 010335 362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD---AECESPACAPEIRKNR 421 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~---~~~~~~~~~~~~~~~~ 421 (513)
....||||...+..-+.+|+ | .||..|....-+ ....||+||.++....
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH-----------~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGH-----------NFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCC-----------EEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCC-----------hhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 45579999999999888888 8 899999866554 4568999999987653
No 181
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.33 E-value=0.0031 Score=45.10 Aligned_cols=43 Identities=21% Similarity=0.471 Sum_probs=35.8
Q ss_pred CCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335 363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK 419 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 419 (513)
...||||......-+.+|+ | .||..|... ....||+||.++.-
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH-----------~fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLH-----------TLCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSC-----------CSBTTTCSS---SSSSCSSCCSSSSC
T ss_pred CCCceEeCCccCCeEEcCCCC-----------cccHHHHcc---CCCCCCcCCcEeec
Confidence 3469999999998888888 8 899999665 45789999998764
No 182
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.33 E-value=0.0021 Score=49.27 Aligned_cols=48 Identities=19% Similarity=0.511 Sum_probs=39.1
Q ss_pred CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-------CCCCCCCchhhccc
Q 010335 362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-------ECESPACAPEIRKN 420 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-------~~~~~~~~~~~~~~ 420 (513)
....||||...+..-+.+|+ | .||..|....-+. ...||+||.++...
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH-----------~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGH-----------SLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSC-----------CCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCeeECCCCC-----------HHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 44569999999888777888 8 8999998865443 67899999998764
No 183
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.33 E-value=0.00091 Score=57.92 Aligned_cols=49 Identities=20% Similarity=0.430 Sum_probs=39.6
Q ss_pred ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335 314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 373 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i 373 (513)
..+...|.||++....-+..+|||.+|..|...+.... ...||+||..|
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~-----------~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG-----------PQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS-----------CEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC-----------CCCCCCCCCcc
Confidence 34567899999988887888999999999998886432 22599999876
No 184
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.31 E-value=0.0025 Score=52.18 Aligned_cols=46 Identities=30% Similarity=0.510 Sum_probs=34.3
Q ss_pred ccccchhhhcccc------------------eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335 316 DADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 373 (513)
Q Consensus 316 ~~~~C~iC~~~~~------------------~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i 373 (513)
..+.|.||++... .+...+|||.++..|........ ..||+||..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~------------~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR------------QVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC------------SBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC------------CcCcCCCCcc
Confidence 4566777775432 46778999999999998886542 2499999874
No 185
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=96.25 E-value=0.00071 Score=48.04 Aligned_cols=44 Identities=23% Similarity=0.424 Sum_probs=35.0
Q ss_pred CCCCCCccccce----eeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhc
Q 010335 364 IPCPLCRHGIVS----FTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIR 418 (513)
Q Consensus 364 ~~Cp~Cr~~i~~----~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~ 418 (513)
..||||...+.. .+.+|+ + .||..|....-+....||+||.+|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGH-----------LLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSC-----------EEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCC-----------cccHHHHHHHHHcCCcCCCCCCcCC
Confidence 469999998855 777777 8 8999997665544589999998874
No 186
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.17 E-value=0.00095 Score=57.57 Aligned_cols=45 Identities=20% Similarity=0.533 Sum_probs=39.3
Q ss_pred CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
.||||...+..-+.+|+ | .||..|....-+....||+||.++...
T Consensus 55 ~C~iC~~~~~~~~~~~CgH-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAH-----------SFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp BCTTTCSBCSSEEEETTSC-----------EEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCcccCcccCCceECCCCC-----------CccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 49999999999888988 8 999999877666778999999998754
No 187
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.09 E-value=0.0011 Score=49.15 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=39.7
Q ss_pred CCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCC-CCCCCCCCCchhhcccc
Q 010335 361 PGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTR-DAECESPACAPEIRKNR 421 (513)
Q Consensus 361 ~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~-~~~~~~~~~~~~~~~~~ 421 (513)
.....||||...+..-+.+++ | .||..|....- +....||+||.++....
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGH-----------RFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSC-----------CCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCeeECCCCC-----------HHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 345569999999888777887 8 89999987654 34668999999987654
No 188
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.06 E-value=0.0054 Score=48.71 Aligned_cols=52 Identities=19% Similarity=0.394 Sum_probs=37.1
Q ss_pred cchhhhcccc-eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335 319 TCAVCLERAC-TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 381 (513)
Q Consensus 319 ~C~iC~~~~~-~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 381 (513)
.|.+|.-... .....||.|.+|.+|+....... ...||.|+.+|.++...+-
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~-----------~k~Cp~C~~~V~rVe~~~~ 55 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG-----------DKMCPGCSDPVQRIEQCTR 55 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT-----------CCBCTTTCCBCSEEEEEEG
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc-----------CCCCcCcCCeeeeeEEecc
Confidence 3555543333 33788999999999998875442 2359999999999877543
No 189
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=95.98 E-value=0.0013 Score=48.93 Aligned_cols=45 Identities=20% Similarity=0.485 Sum_probs=36.2
Q ss_pred CCCCCccccce-eeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 365 PCPLCRHGIVS-FTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 365 ~Cp~Cr~~i~~-~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
.||||...+.. .+.+|+ | .||..|.....+....||+||.++...
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLH-----------AFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTE-----------EESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCeeCCccccCCcEecCCCC-----------eeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 69999999877 477777 7 899999765544467999999998754
No 190
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.89 E-value=0.0034 Score=49.20 Aligned_cols=56 Identities=9% Similarity=-0.131 Sum_probs=44.3
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 382 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~ 382 (513)
...-.|.||++-..+-+..+|||.+|..|........ ..||+||..+..-..+|..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~------------~~cP~~~~~l~~~~l~pn~ 67 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS------------PTDPFNRQMLTESMLEPVP 67 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCCBCCGGGCEECH
T ss_pred chheECcccCchhcCCeECCCCCEECHHHHHHHHhcC------------CCCCCCcCCCChHhcchHH
Confidence 3567899999999999999999999999998886531 1599999887655445553
No 191
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.88 E-value=0.0029 Score=53.67 Aligned_cols=49 Identities=22% Similarity=0.646 Sum_probs=38.4
Q ss_pred cccccchhhhcccceE-------EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335 315 DDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 375 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v-------~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~ 375 (513)
.+...|.||++..... ...+|||.+|..|........ ..||+||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC------------SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC------------CCCCCCCCcCCh
Confidence 4567899999866543 778999999999998876542 259999988753
No 192
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.81 E-value=0.0054 Score=59.10 Aligned_cols=59 Identities=8% Similarity=-0.077 Sum_probs=46.1
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCCCc
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV 384 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~~~ 384 (513)
...-.|.||++-..+-+..+|||.+|..|........ ...||+||..+..-..+|...+
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~-----------~~~cP~~~~~~~~~~l~~n~~l 264 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-----------GHFNPVTRSPLTQEQLIPNLAM 264 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT-----------CSSCTTTCCCCCGGGCEECHHH
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC-----------CCCCcCCCCCCchhcCcccHHH
Confidence 3567899999999999999999999999998876542 1139999998876555666433
No 193
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.78 E-value=0.0019 Score=49.97 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=38.4
Q ss_pred CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhc
Q 010335 362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIR 418 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~ 418 (513)
....||||...+..-+.+|+ | .||..|....-+....||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRH-----------YFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSC-----------EEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCCC-----------HhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34569999999988888888 8 8999998666555778999999986
No 194
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.78 E-value=0.0035 Score=48.63 Aligned_cols=48 Identities=19% Similarity=0.547 Sum_probs=38.6
Q ss_pred CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCC------CCCCCCCCchhhccc
Q 010335 362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD------AECESPACAPEIRKN 420 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~------~~~~~~~~~~~~~~~ 420 (513)
....||||...+..-+.+|+ | .||..|....-. ....||+||.++...
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGH-----------SFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSC-----------CBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCCceeCCCCC-----------HHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 45679999999988888888 8 899999765422 267999999998864
No 195
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.75 E-value=0.0018 Score=50.77 Aligned_cols=51 Identities=18% Similarity=0.460 Sum_probs=39.5
Q ss_pred CCCCCCCCccccce----eeecCC-CCccccccccccccCccccCCCCCC---CCCCCCCchhhcccccc
Q 010335 362 GSIPCPLCRHGIVS----FTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA---ECESPACAPEIRKNRVA 423 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~----~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~---~~~~~~~~~~~~~~~~~ 423 (513)
....||||...+.. .+.+|+ | .||..|....-+. ...||+||.++....+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH-----------~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~ 72 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGH-----------TICRQCLEKLLASSINGVRCPFCSKITRITSLT 72 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSC-----------EEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTT
T ss_pred CCCCCccCCccccccCCCeEECCCCC-----------hhhHHHHHHHHHcCCCCcCCCCCCCcccchhHH
Confidence 34569999999887 777777 8 8999997655332 47999999998876443
No 196
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=95.70 E-value=0.0049 Score=54.98 Aligned_cols=57 Identities=18% Similarity=0.451 Sum_probs=43.7
Q ss_pred ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335 314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 381 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 381 (513)
..+...|.||++...+.+..+|||.+|..|...+..... ..||+||..+..-...|.
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~~~~~~~ 71 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-----------HKCPVDNEILLENQLFPD 71 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-----------SBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC-----------CCCCCCccCcchhhhhhh
Confidence 446678999999888888889999999999988865421 159999988876433333
No 197
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=95.69 E-value=0.0008 Score=49.32 Aligned_cols=49 Identities=20% Similarity=0.597 Sum_probs=37.5
Q ss_pred CCCCCCcccccee-------eecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccc
Q 010335 364 IPCPLCRHGIVSF-------TKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVA 423 (513)
Q Consensus 364 ~~Cp~Cr~~i~~~-------~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~ 423 (513)
..||||...+..- +.+++ | .||..|....-+....||+||.++....+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGH-----------VFCSQCLRDSLKNANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSC-----------EEEHHHHHHHHHHCSBCTTTCCBCTTTCEE
T ss_pred CCCCccChhhhCccccCCCEEeCCCCC-----------chhHHHHHHHHHcCCCCCCCCccCCcccee
Confidence 3599999988763 55555 8 899999766544567999999999876543
No 198
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=95.68 E-value=0.003 Score=51.17 Aligned_cols=56 Identities=9% Similarity=-0.122 Sum_probs=43.7
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 382 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~ 382 (513)
...-.|.||++-..+-+..+|||.+|..|........ ..||+||..+..-..+|..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~------------~~cP~~~~~l~~~~L~pn~ 82 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS------------PTDPFNRQTLTESMLEPVP 82 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSC------------SBCSSSCCBCCTTSSEECH
T ss_pred cHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcC------------CCCCCCCCCCChhhceECH
Confidence 3567899999999999999999999999998876431 2599999887654444443
No 199
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=95.63 E-value=0.0047 Score=61.54 Aligned_cols=47 Identities=23% Similarity=0.472 Sum_probs=39.2
Q ss_pred CCCCCccccceeeecCC-CCccccccccccc-cCccccCCCCCCCCCCCCCchhhccccccccc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLG-LCTPCMLHTRDAECESPACAPEIRKNRVALVS 426 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (513)
.||||.......+.+|| | . +|..|.... ..||+||.+|.+..-.++|
T Consensus 297 ~C~IC~~~~~~~v~lpCgH-----------~~fC~~C~~~~----~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 297 TCKVCMDKEVSVVFIPCGH-----------LVVCQECAPSL----RKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp BCTTTSSSBCCEEEETTCC-----------EEECTTTGGGC----SBCTTTCCBCCEEEECC--
T ss_pred CCCccCCcCCceEEcCCCC-----------hhHhHHHHhcC----CcCCCCCCCccCeEEeecC
Confidence 59999999999999999 7 6 999997644 7999999999987655543
No 200
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=95.61 E-value=0.0031 Score=47.88 Aligned_cols=48 Identities=19% Similarity=0.503 Sum_probs=37.6
Q ss_pred CCCCCCCCCccccceeeecC-C-CCccccccccccccCccccCCCCCC--CCCCCCCchhhcc
Q 010335 361 PGSIPCPLCRHGIVSFTKLP-G-SPVKDIKQPLSLGLCTPCMLHTRDA--ECESPACAPEIRK 419 (513)
Q Consensus 361 ~~~~~Cp~Cr~~i~~~~~~~-~-~~~~~~~~~~~~~~c~~c~~~~~~~--~~~~~~~~~~~~~ 419 (513)
+....||||...+..-+.+| + | .||..|....-+. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH-----------~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGN-----------SYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCC-----------EECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCC-----------HHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 34567999999999988898 5 8 9999997655432 3689999997544
No 201
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.49 E-value=0.0023 Score=48.52 Aligned_cols=52 Identities=12% Similarity=0.232 Sum_probs=37.7
Q ss_pred CCCCCCCCccccce---eeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccccccc
Q 010335 362 GSIPCPLCRHGIVS---FTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVAL 424 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~---~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (513)
....||||...+.. ++.+|+ | .||..|....-+....||+||.+|.......
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H-----------~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKH-----------AFHRKCLIKWLEVRKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTE-----------EEEHHHHHHHHHHCSBCTTTCCBCSSCCSCC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCC-----------EecHHHHHHHHHcCCcCCCcCcccccccccC
Confidence 34569999988753 444477 7 8999997665444569999999997754433
No 202
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.48 E-value=0.0033 Score=48.76 Aligned_cols=48 Identities=15% Similarity=0.432 Sum_probs=38.1
Q ss_pred CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCC------CCCCCCCCchhhccc
Q 010335 362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD------AECESPACAPEIRKN 420 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~------~~~~~~~~~~~~~~~ 420 (513)
....||||...+..-+.+|+ | .||..|....-+ ....||+||.++...
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNH-----------SFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSC-----------CBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcceeCCCCC-----------HHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 34579999999888778888 8 899999765322 267999999998765
No 203
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.45 E-value=0.0037 Score=50.37 Aligned_cols=55 Identities=9% Similarity=-0.031 Sum_probs=43.6
Q ss_pred ccccchhhhcccceEEeeCCC-cccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC
Q 010335 316 DADTCAVCLERACTVAAEGCR-HELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 382 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cg-h~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~ 382 (513)
+.-.|.||++-..+-+..+|| |.+|..|........ ..||+||..+..-..+|..
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~------------~~cP~~~~~l~~~~L~pn~ 76 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD------------QTDPFNRSPLTMDQIRPNT 76 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS------------CBCTTTCSBCCTTTSEECH
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhC------------CCCCCCCCCCChhhceEcH
Confidence 467899999999999999999 999999998875431 1599999887654445553
No 204
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=95.44 E-value=0.0028 Score=47.28 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=36.2
Q ss_pred CCCCCCCCccccc---eeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 362 GSIPCPLCRHGIV---SFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~---~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
....||||...+. ..+.+|+ | .||..|.....+....||+||.+|...
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMH-----------LFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSC-----------EEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCC-----------HHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3456999988773 5677777 8 899999765544456799999988653
No 205
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=95.43 E-value=0.0055 Score=47.09 Aligned_cols=49 Identities=22% Similarity=0.528 Sum_probs=36.2
Q ss_pred CCCCCCCccccc--eeeec---CCCCccccccccccccCccccCCCCC-CCCCCCCCchhhccccc
Q 010335 363 SIPCPLCRHGIV--SFTKL---PGSPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIRKNRV 422 (513)
Q Consensus 363 ~~~Cp~Cr~~i~--~~~~~---~~~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~~~ 422 (513)
...||||...+. ....+ .|| .||..|.....+ ....||.||.++..+.+
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH-----------~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGY-----------QICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSC-----------CCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred CCcCCccCccCccccccccccCCCC-----------CcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 446999999773 23444 348 899999766543 46799999999988654
No 206
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=95.33 E-value=0.0032 Score=48.19 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=40.0
Q ss_pred CCCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhccc
Q 010335 360 PPGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRKN 420 (513)
Q Consensus 360 ~~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~~ 420 (513)
.+....||||...+..-+.+|+ | .||..|....-+. ...||+||.++...
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH-----------~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQ-----------TYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTE-----------EEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccCCEEcCCCC-----------eecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 3456679999999888887887 8 8999998665544 67899999998754
No 207
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.33 E-value=0.0031 Score=52.49 Aligned_cols=46 Identities=30% Similarity=0.510 Sum_probs=1.0
Q ss_pred ccccchhhhcccc------------------eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335 316 DADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 373 (513)
Q Consensus 316 ~~~~C~iC~~~~~------------------~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i 373 (513)
..+.|.||++... .++..+|+|.++..|........ ..||+||...
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~------------~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR------------QVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC------------CcCCCCCCee
Confidence 4578999987643 23446999999999997775442 2599999874
No 208
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.30 E-value=0.0067 Score=50.29 Aligned_cols=45 Identities=27% Similarity=0.592 Sum_probs=38.3
Q ss_pred CCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhcc
Q 010335 364 IPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRK 419 (513)
Q Consensus 364 ~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~ 419 (513)
..||||...+..-+.+|+ | .||..|.....+. ...||+||.++..
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNH-----------TLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSC-----------EECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCccCCcccCceeEcCCCC-----------HHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 459999999998888888 8 8999998877654 6799999999864
No 209
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.23 E-value=0.012 Score=45.40 Aligned_cols=57 Identities=21% Similarity=0.437 Sum_probs=40.1
Q ss_pred Cccccccchhhhccc--ceEEeeCCC-----cccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 313 SSDDADTCAVCLERA--CTVAAEGCR-----HELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 313 s~~~~~~C~iC~~~~--~~v~~~~Cg-----h~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
.....+.|.||++.. ......||+ |.+...|......... ...||+||..+..-.++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~----------~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD----------TRCCELCKYEFIMETKL 74 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC----------CSBCSSSCCBCCCCCCS
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC----------CCCCCCCCCeeecCccc
Confidence 345678999999653 223457996 9999999999876532 12599999887644443
No 210
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.23 E-value=0.0042 Score=45.74 Aligned_cols=48 Identities=21% Similarity=0.420 Sum_probs=34.6
Q ss_pred CCCCCCcc-cccee----eecCC-CCccccccccccccCccccCCC-CCCCCCCCCCchhhccccc
Q 010335 364 IPCPLCRH-GIVSF----TKLPG-SPVKDIKQPLSLGLCTPCMLHT-RDAECESPACAPEIRKNRV 422 (513)
Q Consensus 364 ~~Cp~Cr~-~i~~~----~~~~~-~~~~~~~~~~~~~~c~~c~~~~-~~~~~~~~~~~~~~~~~~~ 422 (513)
..||||.. ....- +.+++ | .||..|.... .+....||+||.++.++.+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGH-----------TLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCC-----------CEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCC-----------HhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 35999998 44332 34555 8 8999998665 3345689999999987654
No 211
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.15 E-value=0.012 Score=48.82 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=36.1
Q ss_pred CCCCCCccccceeeec-CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335 364 IPCPLCRHGIVSFTKL-PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK 419 (513)
Q Consensus 364 ~~Cp~Cr~~i~~~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 419 (513)
..||||...+..-+.+ |+ | .||..|....-+ ..||+||.++..
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH-----------~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEH-----------IFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSC-----------CBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCCChHhhCccEeCCCCC-----------HHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 4699999999988888 66 8 999999766654 789999999854
No 212
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=95.09 E-value=0.002 Score=51.23 Aligned_cols=46 Identities=24% Similarity=0.455 Sum_probs=36.8
Q ss_pred CCCCCCCccccce---eeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335 363 SIPCPLCRHGIVS---FTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK 419 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~---~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 419 (513)
...||||...+.. .+.+|+ | .||..|....-+....||+||.++..
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H-----------~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHH-----------YFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTE-----------EEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCcccChhhcCCCcEEecCCCC-----------hHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3459999988776 777888 7 89999987665566799999988754
No 213
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=94.94 E-value=0.0037 Score=52.65 Aligned_cols=45 Identities=16% Similarity=0.408 Sum_probs=37.0
Q ss_pred CCCCCccccceeeecCC-CCccccccccccccCccccCCCCC-CCCCCCCCchhhccc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIRKN 420 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~ 420 (513)
.||||...+..-+.+|+ | .||..|....-+ ....||+||.++..+
T Consensus 54 ~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 100 (124)
T 3fl2_A 54 QCICCQELVFRPITTVCQH-----------NVCKDCLDRSFRAQVFSCPACRYDLGRS 100 (124)
T ss_dssp BCTTTSSBCSSEEECTTSC-----------EEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCCcCChHHcCcEEeeCCC-----------cccHHHHHHHHhHCcCCCCCCCccCCCC
Confidence 49999999998888888 8 899999765543 345999999999763
No 214
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=94.78 E-value=0.005 Score=49.56 Aligned_cols=46 Identities=13% Similarity=0.386 Sum_probs=37.2
Q ss_pred CCCCCCccccceeeec-CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 364 IPCPLCRHGIVSFTKL-PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 364 ~~Cp~Cr~~i~~~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
..||||...+..-+.+ |+ | .||..|....-+....||+||.++...
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH-----------~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSH-----------NYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCC-----------EEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCcccCChhhCCcCEECCCCC-----------HhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 3599999998887777 56 8 899999866555567999999988763
No 215
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.76 E-value=0.0056 Score=50.37 Aligned_cols=45 Identities=27% Similarity=0.551 Sum_probs=35.7
Q ss_pred CCCCCccccceeeecCC-CCccccccccccccCccccCCCCC---CCCCCCCCchhhccc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD---AECESPACAPEIRKN 420 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~---~~~~~~~~~~~~~~~ 420 (513)
.||||...+..-+.+|+ | .||..|....-+ ....||+||.++..+
T Consensus 23 ~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 23 ECPICLELIKEPVSTKCDH-----------IFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp SCSSSCCCCSSCCBCTTSC-----------CCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCcccChhhcCeEECCCCC-----------HHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 59999999988777888 8 899999754432 235899999988764
No 216
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=94.71 E-value=0.0049 Score=50.51 Aligned_cols=46 Identities=20% Similarity=0.537 Sum_probs=38.3
Q ss_pred CCCCCCccccceeeec-CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 364 IPCPLCRHGIVSFTKL-PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 364 ~~Cp~Cr~~i~~~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
..||||...+..-+.+ |+ | .||..|....-+....||+||.++...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH-----------~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLH-----------SFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCC-----------EEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCCccCChHHhCcCEeCCCCC-----------hhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3599999999888887 77 8 999999876655568999999998764
No 217
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=94.70 E-value=0.0051 Score=61.80 Aligned_cols=52 Identities=21% Similarity=0.422 Sum_probs=42.9
Q ss_pred CCCCCCccccceeeecCC-CCccccccccccccCccccCCCCC-CCCCCCCCchhhccccccccc
Q 010335 364 IPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIRKNRVALVS 426 (513)
Q Consensus 364 ~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 426 (513)
..||||.......+.+|| | .+|..|.....+ ....||+||.++....+..+.
T Consensus 333 ~~C~ICle~~~~pv~lpCGH-----------~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~ 386 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGH-----------LMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCC-----------EECHHHHHHHHHHTCSBCTTTCCBCCEEEECSCC
T ss_pred CCCCccCcCCCCeEEeCCCC-----------hhhHHHHHHHHhcCCCCCCCCCCccCCceeEecC
Confidence 369999999999999999 8 899999865544 467999999999988766554
No 218
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=94.62 E-value=0.0038 Score=50.46 Aligned_cols=46 Identities=13% Similarity=0.327 Sum_probs=37.3
Q ss_pred CCCCCccccceeee-cCC-CCccccccccccccCccccCCCCCCC-CCCCCCchhhcccc
Q 010335 365 PCPLCRHGIVSFTK-LPG-SPVKDIKQPLSLGLCTPCMLHTRDAE-CESPACAPEIRKNR 421 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~-~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~-~~~~~~~~~~~~~~ 421 (513)
.||||...+..-+. +++ | .||..|....-+.. ..||.||.++....
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH-----------~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 24 RCFICMEKLRDARLCPHCSK-----------LCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp BCTTTCSBCSSEEECTTTCC-----------EEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCccCCccccCccccCCCCC-----------hhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 59999999998888 777 8 89999976554433 69999999987653
No 219
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.51 E-value=0.012 Score=47.00 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=44.2
Q ss_pred cccccchhhhcccceEEeeC-CCcccchhhHhHhhccCCCCCCCCCCCCCCCCCC--Cccc-cceeeecCCC
Q 010335 315 DDADTCAVCLERACTVAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL--CRHG-IVSFTKLPGS 382 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~-Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~--Cr~~-i~~~~~~~~~ 382 (513)
...-.|.||++-..+-+..+ |||.+|..|...+...... ..+...||+ |+.. +..-...|..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~------~~~~~~CP~tgc~~~~l~~~~L~pn~ 70 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQK------RKKKAYCPQIGCSHTDIRKSDLIQDE 70 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHT------TTCCBCCCSTTCCCCCBCGGGEEECH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccC------cCCCCCCCcCcCcccccCHhhCcCCH
Confidence 45578999999999888886 9999999999888654210 002336999 9876 5544455554
No 220
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=94.41 E-value=0.0096 Score=53.36 Aligned_cols=59 Identities=10% Similarity=-0.042 Sum_probs=46.2
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCCCc
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV 384 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~~~ 384 (513)
...-.|.||++-..+-+..+|||.+|..|........ +. .||+|+..+..-..+|...+
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~----------~~-tcP~t~~~l~~~~L~pN~~L 162 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV----------GH-FDPVTRSPLTQDQLIPNLAM 162 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT----------CS-BCTTTCCBCCGGGCEECHHH
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC----------CC-CCCCCcCCCChhhCcchHHH
Confidence 4567899999999999889999999999998886542 11 49999988776556666433
No 221
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.35 E-value=0.0081 Score=46.46 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=22.1
Q ss_pred ccCccccCCCCCCCCCCCCCchhhccc
Q 010335 394 GLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 394 ~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
.|+..|...--+....||+||.++...
T Consensus 51 ~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 51 SFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp EEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred ccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 899999876666667999999987654
No 222
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=94.27 E-value=0.0058 Score=53.37 Aligned_cols=45 Identities=20% Similarity=0.476 Sum_probs=37.2
Q ss_pred CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhccc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRKN 420 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~~ 420 (513)
.||||...+..-+.+|+ + .||..|....-+. ...||+||.++...
T Consensus 80 ~C~IC~~~~~~pv~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 80 MCVCCQELVYQPVTTECFH-----------NVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp BCTTTSSBCSSEEECTTSC-----------EEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred EeecCChhhcCCEEcCCCC-----------chhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 49999999998888998 8 8999997655443 34899999998865
No 223
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.13 E-value=0.0033 Score=47.78 Aligned_cols=46 Identities=20% Similarity=0.371 Sum_probs=34.8
Q ss_pred CCCCCCCccccce---eeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335 363 SIPCPLCRHGIVS---FTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK 419 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~---~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 419 (513)
...||||...+.. ++.+|+ | .||..|....-+....||+||.++..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H-----------~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNH-----------EFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTE-----------EEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCC-----------HhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3469999977654 467777 7 89999976654456789999988753
No 224
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.88 E-value=0.029 Score=39.79 Aligned_cols=41 Identities=15% Similarity=0.457 Sum_probs=32.7
Q ss_pred CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCC---CCCCCCCCCC
Q 010335 362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHT---RDAECESPAC 413 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~---~~~~~~~~~~ 413 (513)
....||||...+..-+.+|+ | .||..|.... .+....||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGH-----------NFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCC-----------CCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCC-----------ccCHHHHHHHHHhcCCCCCCCCC
Confidence 45579999999988888888 8 8999998665 3356789887
No 225
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=93.84 E-value=0.0073 Score=47.79 Aligned_cols=47 Identities=19% Similarity=0.506 Sum_probs=36.9
Q ss_pred CCCCCCCCCCccccceeeecC-C-CCccccccccccccCccccCCCCC--CCCCCCCCchhh
Q 010335 360 PPGSIPCPLCRHGIVSFTKLP-G-SPVKDIKQPLSLGLCTPCMLHTRD--AECESPACAPEI 417 (513)
Q Consensus 360 ~~~~~~Cp~Cr~~i~~~~~~~-~-~~~~~~~~~~~~~~c~~c~~~~~~--~~~~~~~~~~~~ 417 (513)
.+....||||...+..-+.+| + | .||..|....-. ....||+||.++
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH-----------~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGN-----------SYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCC-----------EECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCceECCCCCC-----------HHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 345567999999999888888 4 8 899999765432 236999999986
No 226
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=93.80 E-value=0.011 Score=48.88 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=34.2
Q ss_pred CCCCCCcccccee------------------eecCC-CCccccccccccccCccccCCCC-----CCCCCCCCCchhhcc
Q 010335 364 IPCPLCRHGIVSF------------------TKLPG-SPVKDIKQPLSLGLCTPCMLHTR-----DAECESPACAPEIRK 419 (513)
Q Consensus 364 ~~Cp~Cr~~i~~~------------------~~~~~-~~~~~~~~~~~~~~c~~c~~~~~-----~~~~~~~~~~~~~~~ 419 (513)
..||||+..+..- +.+|+ | .||..|....- +....||+||.++..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H-----------~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSH-----------AFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCC-----------EECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCC-----------cccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3699999887432 24555 7 89999975443 456799999999987
Q ss_pred cc
Q 010335 420 NR 421 (513)
Q Consensus 420 ~~ 421 (513)
..
T Consensus 95 ~~ 96 (114)
T 1v87_A 95 KT 96 (114)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 227
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=93.54 E-value=0.009 Score=52.95 Aligned_cols=44 Identities=18% Similarity=0.542 Sum_probs=35.7
Q ss_pred CCCCCccccceeeec-CC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhcc
Q 010335 365 PCPLCRHGIVSFTKL-PG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRK 419 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~ 419 (513)
.||||...+..-+.+ |+ | .||..|....-+. ...||+||.++..
T Consensus 56 ~C~IC~~~~~~p~~~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 56 MCPICLDMLKNTMTTKECLH-----------RFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp BCTTTSSBCSSEEEETTTCC-----------EEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCcccChHhhCcCEeCCCCC-----------hhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 599999999988776 66 8 9999997655443 6789999999854
No 228
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=93.42 E-value=0.0099 Score=49.29 Aligned_cols=47 Identities=17% Similarity=0.414 Sum_probs=38.0
Q ss_pred CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhccccc
Q 010335 365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRKNRV 422 (513)
Q Consensus 365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~~~~ 422 (513)
.||||...+..-+.+|+ + .||..|....-+. ...||+||.++....+
T Consensus 25 ~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 25 SCQICEHILADPVETSCKH-----------LFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp BCTTTCSBCSSEEECTTSC-----------EEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCcHhcCcEEcCCCC-----------cccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 59999999998888888 8 8999997654432 5689999999887543
No 229
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.08 E-value=0.014 Score=46.38 Aligned_cols=53 Identities=21% Similarity=0.439 Sum_probs=34.6
Q ss_pred ccccchhhhcccceE---EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCC--Cccc
Q 010335 316 DADTCAVCLERACTV---AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL--CRHG 372 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v---~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~--Cr~~ 372 (513)
....|.||++..... ...+|||.+|..|.......... .+....+.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~----~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIK----EGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHH----HCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhh----cCCcccccCccccCCCC
Confidence 356799999865432 33489999999998777543210 01112357999 9976
No 230
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=93.00 E-value=0.0095 Score=49.64 Aligned_cols=48 Identities=17% Similarity=0.490 Sum_probs=38.0
Q ss_pred CCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCC-CCCCCCchhhcccc
Q 010335 363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAE-CESPACAPEIRKNR 421 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~-~~~~~~~~~~~~~~ 421 (513)
...||||...+..-+.+|+ + .||..|....-+.. ..||+||.++....
T Consensus 18 ~~~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 18 KYECPICLMALREAVQTPCGH-----------RFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp GGBCTTTCSBCSSEEECTTSC-----------EEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCcCChhhcCeEECCcCC-----------hhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 4469999999988888888 8 89999976544332 39999999998754
No 231
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=92.83 E-value=0.079 Score=50.04 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=44.0
Q ss_pred ccccccchhhhcccceEEe-eCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCC--CccccceeeecCCC
Q 010335 314 SDDADTCAVCLERACTVAA-EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL--CRHGIVSFTKLPGS 382 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~-~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~--Cr~~i~~~~~~~~~ 382 (513)
....-.|.||++...+-+. ..|||.+|..|...+.... +...||+ ||..+..--..|..
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~----------~~~~CPvtGCr~~l~~~dL~pN~ 239 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY----------TTRDCPQAACSQVVSMRDFVRDP 239 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC----------SCEECSGGGCSCEECGGGEEECH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC----------CCCCCCcccccCcCchhhCCcCH
Confidence 4456789999999888876 4999999999998886431 2236999 99977654445543
No 232
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=92.57 E-value=0.019 Score=45.58 Aligned_cols=57 Identities=18% Similarity=0.459 Sum_probs=46.7
Q ss_pred CCCCCcccccee-eecCC-CCccccccccccccCccccCCCC-CCCCCCCCCchhhcccccccccCCcccc
Q 010335 365 PCPLCRHGIVSF-TKLPG-SPVKDIKQPLSLGLCTPCMLHTR-DAECESPACAPEIRKNRVALVSSDMLCP 432 (513)
Q Consensus 365 ~Cp~Cr~~i~~~-~~~~~-~~~~~~~~~~~~~~c~~c~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (513)
.|+.|.-+|... +-+|+ + .||..|+.... +.++.||.|+.+|.+=-..++++-..|+
T Consensus 3 fC~~C~~Pi~iygRmIPCkH-----------vFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~~~if~C~ 62 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKH-----------VFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLFMCS 62 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCC-----------EEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEGGGCCCCC
T ss_pred ecCccCCCeEEEeeeccccc-----------cHHHHHHHHHHhccCCCCcCcCCeeeeeEEeccCCEEECC
Confidence 499999998876 77899 8 99999987765 4689999999999997666777666666
No 233
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.03 E-value=0.032 Score=40.48 Aligned_cols=41 Identities=17% Similarity=0.542 Sum_probs=32.5
Q ss_pred CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCC---CCCCCCCC
Q 010335 362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD---AECESPAC 413 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~---~~~~~~~~ 413 (513)
....||||+..+..-+.+|+ | .||..|.....+ ....||+|
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGH-----------NFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSS-----------EECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEeCCCC-----------cchHHHHHHHHHcCCCCCcCcCC
Confidence 45579999999998888888 8 899999765533 45589987
No 234
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=91.28 E-value=0.038 Score=45.86 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred ccCccccCCCCCCCCCCCCCchhhc
Q 010335 394 GLCTPCMLHTRDAECESPACAPEIR 418 (513)
Q Consensus 394 ~~c~~c~~~~~~~~~~~~~~~~~~~ 418 (513)
.|+..|...--+....||+||.++.
T Consensus 87 ~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 87 AFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp -------------------------
T ss_pred eEcHHHHHHHHHcCCcCCCCCCeee
Confidence 8999998777667789999999864
No 235
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=91.11 E-value=0.038 Score=45.03 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=20.3
Q ss_pred ccCccccCCCCCCCCCCCCCchhhc
Q 010335 394 GLCTPCMLHTRDAECESPACAPEIR 418 (513)
Q Consensus 394 ~~c~~c~~~~~~~~~~~~~~~~~~~ 418 (513)
.|+..|...--.....||+||.++.
T Consensus 76 ~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 76 AFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp EEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred EECHHHHHHHHHcCCcCcCCCCcce
Confidence 8999998766556789999999864
No 236
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.13 E-value=0.23 Score=37.47 Aligned_cols=51 Identities=20% Similarity=0.447 Sum_probs=36.9
Q ss_pred ccccccchhhhcccc-eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 314 SDDADTCAVCLERAC-TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~-~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
.+..+.|.||.+... ......|+|.+-..|....-.+.. ...||+||....
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~----------~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA----------EPRCPHCNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS----------SCCCTTTCSCCC
T ss_pred cCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC----------CCCCCCCcCcCC
Confidence 456789999997654 234558999999999988865431 135999997754
No 237
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=89.45 E-value=0.097 Score=42.08 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 359 GPPGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 359 ~~~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
..|..-.||||..-...=+.+|+ + .||..|....-+....||+||.++...
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGh-----------tf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGT-----------IMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTE-----------EEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cCcHhhCCcCccCcccCCeECCCCC-----------EEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 34556679999998888888887 7 899999876655567999999987653
No 238
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=89.02 E-value=0.033 Score=47.96 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=35.5
Q ss_pred CCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhh
Q 010335 363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEI 417 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~ 417 (513)
...||||...+..-+.+++ + .||..|....-+. ...||.||.++
T Consensus 31 ~~~C~IC~~~~~~pv~~~CgH-----------~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVLRRPFQAQCGH-----------RYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBCSSEEECTTSC-----------EEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCCCCCChhhcCcEECCCCC-----------ccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3469999998888777887 8 9999998776443 35899999986
No 239
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=88.03 E-value=0.09 Score=40.85 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=39.3
Q ss_pred CCCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 360 PPGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 360 ~~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
.|..-.||||..-...=+.+|+ + .||..|....-+....||+||.++...
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGh-----------tf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGT-----------VMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSC-----------EEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CchheECcccCchhcCCeECCCCC-----------EECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4556679999999888888887 7 899999765544467899999887654
No 240
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=86.92 E-value=0.23 Score=39.72 Aligned_cols=51 Identities=8% Similarity=0.047 Sum_probs=39.4
Q ss_pred CCCCCCCCCCCccccceeeecCC--CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335 359 GPPGSIPCPLCRHGIVSFTKLPG--SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420 (513)
Q Consensus 359 ~~~~~~~Cp~Cr~~i~~~~~~~~--~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~ 420 (513)
..|..-.||||..-...=+.+|+ + .||..|....-+....||+||.++...
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~h-----------tf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRV-----------TVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCC-----------EEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cCcHhcCCcCccccccCCeECCCCCe-----------EECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 34556679999988888777774 7 899999866655567899999888754
No 241
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=85.88 E-value=0.087 Score=46.67 Aligned_cols=49 Identities=16% Similarity=0.478 Sum_probs=38.0
Q ss_pred CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhcccc
Q 010335 362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRKNR 421 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~~~ 421 (513)
....||||...+..-+.+++ + .||..|....-+. ...||+||.++..+.
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGH-----------RFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSC-----------EEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCChhhcCcEECCCCC-----------HHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 34569999999888777887 8 8999997655332 349999999988753
No 242
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=85.49 E-value=0.41 Score=34.43 Aligned_cols=49 Identities=16% Similarity=0.392 Sum_probs=34.1
Q ss_pred cccccchhhhcccceEEeeCCCc-----ccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335 315 DDADTCAVCLERACTVAAEGCRH-----ELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 373 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh-----~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i 373 (513)
++...|.||++........||.. .+-..|.......+. ...||+|+..+
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~----------~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR----------NTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT----------CSBCTTTCCBC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC----------CCccCCCCCee
Confidence 45678999997655445678653 467788888875421 23599999765
No 243
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=85.10 E-value=0.2 Score=47.86 Aligned_cols=50 Identities=6% Similarity=-0.056 Sum_probs=37.6
Q ss_pred CCCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhccc
Q 010335 360 PPGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRKN 420 (513)
Q Consensus 360 ~~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~~ 420 (513)
.|..-.||||......=+.+|+ + .||..|....-+. ...||+||.++...
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh-----------~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGI-----------TYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCC-----------EEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CCcccCCcCcCCHhcCCeECCCCC-----------EECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 3455579999999888888888 8 8999997644332 23499999988654
No 244
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.84 E-value=0.39 Score=36.78 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCCccccc--eeeecCCCCccccccccccccCccccCCCCCC--CCCCCCCchhhccc
Q 010335 357 MVGPPGSIPCPLCRHGIV--SFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDA--ECESPACAPEIRKN 420 (513)
Q Consensus 357 ~~~~~~~~~Cp~Cr~~i~--~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~--~~~~~~~~~~~~~~ 420 (513)
+..+.....|+||..... .-+.+|+.-- ...-.|...|...--+. ...||+||.++.-.
T Consensus 9 s~~~~~~~~C~IC~~~~~~~~~l~~pC~C~-----Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 9 SITPSSQDICRICHCEGDDESPLITPCHCT-----GSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCCCTTSCCCSSSCCCCCSSSCEECSSSCC-----SSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCCCeEcCccccCCCeeEeccccC-----CcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 344445567999997652 2234565100 00015666675443332 25899999998754
No 245
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=77.01 E-value=1 Score=32.36 Aligned_cols=51 Identities=8% Similarity=-0.033 Sum_probs=39.6
Q ss_pred ccchhhhcccceEEee-CCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecC
Q 010335 318 DTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP 380 (513)
Q Consensus 318 ~~C~iC~~~~~~v~~~-~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~ 380 (513)
..|.|+++-..+-+.. ++||.++.+|...+..... .||+++..+..--.+|
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~------------~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG------------NDPITNEPLSIEEIVE 55 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS------------BCTTTCCBCCGGGCEE
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC------------CCcCCcCCCChhhcEE
Confidence 4689999988888888 9999999999998875521 3999998875544443
No 246
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=74.50 E-value=0.86 Score=44.66 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=35.8
Q ss_pred cccccchhhhcccce------EEe--eCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335 315 DDADTCAVCLERACT------VAA--EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 374 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~------v~~--~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~ 374 (513)
+....|.||++.... ..+ ..|||.+...|....-.+...+. .+..--...||.||++|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sR-qSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGK-TFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSS-CTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCcc-ccccccCCCCCCCCCcCC
Confidence 456899999975443 223 37999999999877653311000 000011235999999875
No 247
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.95 E-value=0.43 Score=37.67 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=35.1
Q ss_pred CCCCCCCCCccccceeeecC--CCCccccccccccccCccccCCCCC------CCCCCCC--Cchh-hcc
Q 010335 361 PGSIPCPLCRHGIVSFTKLP--GSPVKDIKQPLSLGLCTPCMLHTRD------AECESPA--CAPE-IRK 419 (513)
Q Consensus 361 ~~~~~Cp~Cr~~i~~~~~~~--~~~~~~~~~~~~~~~c~~c~~~~~~------~~~~~~~--~~~~-~~~ 419 (513)
+....||||...+..=+.+| |+ .||..|....-+ ....||+ |+.+ +..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh-----------~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGH-----------TYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCC-----------EEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcCCEEcCCCCC-----------eecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 34557999999999888886 48 899999755432 2458999 8865 443
No 248
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=69.96 E-value=2.5 Score=31.76 Aligned_cols=54 Identities=26% Similarity=0.580 Sum_probs=37.9
Q ss_pred ccccccchhhhcccceEEeeCC----CcccchhhHhHhhccCCCCCCCCCCCCCCCCCC
Q 010335 314 SDDADTCAVCLERACTVAAEGC----RHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL 368 (513)
Q Consensus 314 ~~~~~~C~iC~~~~~~v~~~~C----gh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~ 368 (513)
....-.|.+|.++--+.+++.| +|.+|..|....-...........|.| ..||+
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG-~kCpL 69 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG-EKCPL 69 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS-SCCBC
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC-Ccccc
Confidence 3456789999999999988888 788999999877655444444444432 34554
No 249
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=69.67 E-value=0.65 Score=41.41 Aligned_cols=49 Identities=6% Similarity=-0.033 Sum_probs=36.2
Q ss_pred CCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhccc
Q 010335 361 PGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRKN 420 (513)
Q Consensus 361 ~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~~ 420 (513)
|....||||..-...=+.+|+ + .||..|....-.. ...||+|+.++...
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Gh-----------tfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGI-----------TYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSC-----------EEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCCeECCCCC-----------EECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 345579999998888888887 7 8999887554322 22699999888654
No 250
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=68.84 E-value=3.1 Score=32.39 Aligned_cols=54 Identities=22% Similarity=0.449 Sum_probs=38.8
Q ss_pred CccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335 313 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 379 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~ 379 (513)
+......|..|.-.....+. -..|.+|.+|.-.+... +..||||...+-.-.++
T Consensus 24 s~~G~~nCKsCWf~~k~LV~-C~dHYLCl~CLtlmL~~------------SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKGLVE-CNNHYLCLNCLTLLLSV------------SNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCSCCCCCCSSCSCCSSEEE-CSSCEEEHHHHHHTCSS------------SSEETTTTEECCCCSCT
T ss_pred cccCcccChhhccccCCeee-ecchhhHHHHHHHHHhh------------ccCCcccCCcCCcceec
Confidence 45677899999977665544 56789999999887654 33699999875443333
No 251
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=64.46 E-value=2.6 Score=32.84 Aligned_cols=56 Identities=14% Similarity=0.274 Sum_probs=47.2
Q ss_pred CCCCCCCCccccceeeecCCCCccccccccccccCccccCCCCCCCCCCCCCchhhcccccccccCC
Q 010335 362 GSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSD 428 (513)
Q Consensus 362 ~~~~Cp~Cr~~i~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (513)
|.-.|.-|...-.++++=-.| .+|--|-+.+-..+.-||||+.++-.++..+...+
T Consensus 27 G~~nCKsCWf~~k~LV~C~dH-----------YLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~PS 82 (99)
T 2ko5_A 27 GPQFCKSCWFENKGLVECNNH-----------YLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAPT 82 (99)
T ss_dssp CCCCCCSSCSCCSSEEECSSC-----------EEEHHHHHHTCSSSSEETTTTEECCCCSCTTTSCC
T ss_pred CcccChhhccccCCeeeecch-----------hhHHHHHHHHHhhccCCcccCCcCCcceecCcCCC
Confidence 444699999888888887779 99999999999999999999999998876665533
No 252
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=62.93 E-value=1.7 Score=40.91 Aligned_cols=47 Identities=9% Similarity=0.142 Sum_probs=35.4
Q ss_pred CCCCCCCccccceeeec--CCCCccccccccccccCccccCCCCCC--CCCCCC--Cchhhccc
Q 010335 363 SIPCPLCRHGIVSFTKL--PGSPVKDIKQPLSLGLCTPCMLHTRDA--ECESPA--CAPEIRKN 420 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~~~~~--~~~~~~~~~~~~~~~~c~~c~~~~~~~--~~~~~~--~~~~~~~~ 420 (513)
...||||...+..=+.+ +|| .||..|....-.. ...||. |+.++..+
T Consensus 181 el~CPIcl~~f~DPVts~~CGH-----------sFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 181 ELTCPITCKPYEAPLISRKCNH-----------VFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CSBCTTTSSBCSSEEEESSSCC-----------EEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred eeECcCccCcccCCeeeCCCCC-----------cccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 44699999988877753 458 8999998765432 358999 99987664
No 253
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=60.81 E-value=6 Score=22.19 Aligned_cols=18 Identities=39% Similarity=1.119 Sum_probs=15.7
Q ss_pred cCCCCCCCcCCcccCCCC
Q 010335 435 CSPFPSVAIPLCTCNDGP 452 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~ 452 (513)
|.+||.-+--+|.|.|-|
T Consensus 3 cg~ypnaachpc~c~~rp 20 (26)
T 1p1p_A 3 CGSYPNAACHPCSCKDRP 20 (26)
T ss_dssp STTSCCSSCCTTTSTTCC
T ss_pred cccCCCccccccccCCCC
Confidence 788999999999998766
No 254
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.48 E-value=3.5 Score=32.09 Aligned_cols=47 Identities=23% Similarity=0.477 Sum_probs=31.0
Q ss_pred CCCCCCCccccce--eeec-CC-CCccccccccccccCccccCCC-------CC-CCCCCCC--Cchh--hccc
Q 010335 363 SIPCPLCRHGIVS--FTKL-PG-SPVKDIKQPLSLGLCTPCMLHT-------RD-AECESPA--CAPE--IRKN 420 (513)
Q Consensus 363 ~~~Cp~Cr~~i~~--~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~-------~~-~~~~~~~--~~~~--~~~~ 420 (513)
...||||...+.. +..+ ++ | .||..|.... +. ....||. |+.. +...
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH-----------~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQC-----------IFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTE-----------EEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CcCCcccCcccccccceEcCCCCC-----------cccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 4469999987654 3332 34 8 9999996332 21 3458999 9988 5543
No 255
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.08 E-value=20 Score=27.56 Aligned_cols=55 Identities=25% Similarity=0.569 Sum_probs=40.6
Q ss_pred cccccchhhhcc-------cceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecC
Q 010335 315 DDADTCAVCLER-------ACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP 380 (513)
Q Consensus 315 ~~~~~C~iC~~~-------~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~ 380 (513)
.....|.||-+. ...|+..-|+..+|..|..|--.. +...||-|.....+....|
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke-----------G~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE-----------GTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT-----------SCSSCTTTCCCCCCCTTCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc-----------cCccccccCCccccccCCC
Confidence 355799999975 356677788888999999888655 3446999998877554444
No 256
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=48.74 E-value=8.4 Score=27.83 Aligned_cols=35 Identities=29% Similarity=0.563 Sum_probs=27.8
Q ss_pred CccccccchhhhcccceEEeeCC-CcccchhhHhHhh
Q 010335 313 SSDDADTCAVCLERACTVAAEGC-RHELCVRCALYLC 348 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v~~~~C-gh~~C~~C~l~l~ 348 (513)
...+...|.||.+. +++...+| |-.+|.+|-...-
T Consensus 4 ~~ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 4 GSSGLPWCCICNED-ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp SCCCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHT
T ss_pred cCcCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHc
Confidence 34567899999998 77899999 4458999986664
No 257
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=45.95 E-value=69 Score=32.95 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=7.7
Q ss_pred HHcCCHHHHHHHH
Q 010335 18 ARDGDFVEAKMLL 30 (513)
Q Consensus 18 a~~G~~e~vk~LL 30 (513)
++.|+++.+..|+
T Consensus 37 ~k~G~~~~A~~lf 49 (501)
T 4g26_A 37 SKKGDVLEALRLY 49 (501)
T ss_dssp TTSCCHHHHHHHH
T ss_pred HhCCCHHHHHHHH
Confidence 4566666655555
No 258
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=35.15 E-value=80 Score=31.52 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=42.4
Q ss_pred HHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHH
Q 010335 16 SAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQ 95 (513)
Q Consensus 16 ~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk 95 (513)
..+..||...|+..|..|.+.+.. .|.--.+ ||+. . +.. ..|.|-+|+|++..+-+++.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~------lt~~e~~-----------lln~-~--~af-~~g~tlvhlair~~r~~~l~ 86 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQ------LTADEVR-----------LLNR-P--SAF-DVGYTLVHLAIRFQRQDMLA 86 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCC------CCHHHHH-----------HHCC-T--TTC-CTTCCHHHHHHHTTCHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcc------cCHHHHH-----------HhCC-C--ccc-ccCchhhhhhhhhhhhhHHH
Confidence 356789999999999988776543 2333333 2221 1 122 34888888888888888888
Q ss_pred HHHh
Q 010335 96 TLLL 99 (513)
Q Consensus 96 ~LL~ 99 (513)
.|+.
T Consensus 87 ~ll~ 90 (454)
T 3zrh_A 87 ILLT 90 (454)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8876
No 259
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=35.07 E-value=27 Score=22.27 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCHHHHHHHHh
Q 010335 12 ERLVSAARDGDFVEAKMLLD 31 (513)
Q Consensus 12 ~~L~~Aa~~G~~e~vk~LL~ 31 (513)
..++.|+..||++.+++|-.
T Consensus 15 QqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 15 KQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHH
Confidence 45677788888888877643
No 260
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=31.99 E-value=1.1e+02 Score=26.71 Aligned_cols=110 Identities=11% Similarity=-0.015 Sum_probs=63.0
Q ss_pred CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC----------------
Q 010335 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS---------------- 73 (513)
Q Consensus 10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~---------------- 73 (513)
....|-.|+..|+++++..+.+.-.+... .+..=..|...|++++++.-..+--|+..
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l~~~~~------Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKLNDSIT------WERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHCCHHH------HHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHhCCHHH------HHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHH
Confidence 45678889999999988877664321111 13445566667777777665554333211
Q ss_pred ------CCCCCChHHHHHHHcCCHH-HHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335 74 ------RNYCGQTALMQACRYGHWE-VVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVAD 134 (513)
Q Consensus 74 ------~d~~g~TpLh~A~~~g~~e-iVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ 134 (513)
...+...+++.+...|..+ .+++|++.|- ..-+..+|..+|..++.+.|++.
T Consensus 82 la~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 82 MQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHH
Confidence 1122334455555555543 5555554321 11245667778888888888754
No 261
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=30.56 E-value=1.6e+02 Score=25.75 Aligned_cols=74 Identities=12% Similarity=0.067 Sum_probs=46.9
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHH-HHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTAL-MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124 (513)
Q Consensus 46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpL-h~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~ 124 (513)
.+=+-.|...|++++..-+.+.. + +...+.-| ..|...|++++++.-..+-.|+. ..+.+....|+
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l---~--~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~--------~L~~Ly~~tg~ 75 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKL---N--DSITWERLIQEALAQGNASLAEMIYQTQHSFD--------KLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH---C--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH--------HHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHh---C--CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH--------HHHHHHHHhCC
Confidence 57788999999999887776532 1 11122223 56778899999988877655443 23344444666
Q ss_pred HHHHHHHH
Q 010335 125 VRCIRLVV 132 (513)
Q Consensus 125 ~~iv~~Ll 132 (513)
.+-++.|.
T Consensus 76 ~e~L~kla 83 (177)
T 3mkq_B 76 VNKLSKMQ 83 (177)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655553
No 262
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=30.30 E-value=29 Score=26.69 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=26.9
Q ss_pred CCCCCccccccchhhhcccce----EEeeCCCcccchhhHhH
Q 010335 309 STTSSSDDADTCAVCLERACT----VAAEGCRHELCVRCALY 346 (513)
Q Consensus 309 ~~~~s~~~~~~C~iC~~~~~~----v~~~~Cgh~~C~~C~l~ 346 (513)
+.+....+...|.+|...+.. .+...||+.+|..|.-.
T Consensus 12 p~W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 12 PTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CcCcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 334345567789999987654 37778888888888743
No 263
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=28.29 E-value=1.3e+02 Score=21.54 Aligned_cols=50 Identities=18% Similarity=0.446 Sum_probs=33.8
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccc
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHG 372 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~ 372 (513)
.....|.||.+....+..-.|...+...|..- +....|.+.-.||.|...
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P--------~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCAAAFHWRCHFP--------AGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSCCEECHHHHCT--------TTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCCeEEECCCCCCceecccCCC--------ccCcCCCCCEECccccCC
Confidence 34567999999888888888877777777611 112234556679999754
No 264
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=27.18 E-value=20 Score=33.85 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=25.7
Q ss_pred CCCCCCCCCCchhhcccccccccCCcccccccCCC
Q 010335 404 RDAECESPACAPEIRKNRVALVSSDMLCPVTCSPF 438 (513)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (513)
+..-++||.|..+|++-.+.--+ ..||| .||+-
T Consensus 232 gR~g~pC~~CG~~I~~~~~~gR~-t~~CP-~CQ~~ 264 (266)
T 1ee8_A 232 GREGLPCPACGRPVERRVVAGRG-THFCP-TCQGE 264 (266)
T ss_dssp TCTTSBCTTTCCBCEEEESSSCE-EEECT-TTTTC
T ss_pred ccCCCCCCCCCCEeeEEEECCCc-eEECC-CCCCC
Confidence 34568999999999988876645 78898 78873
No 265
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.00 E-value=11 Score=29.45 Aligned_cols=41 Identities=22% Similarity=0.562 Sum_probs=22.3
Q ss_pred CCCCCCccccceeeecCCCCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335 364 IPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK 419 (513)
Q Consensus 364 ~~Cp~Cr~~i~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 419 (513)
+.||.|.+++..- -+. ..|..|-.++. ..--||-|.+|+++
T Consensus 33 ~~CP~Cq~eL~~~---g~~-----------~hC~~C~~~f~-~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQD---NGH-----------ARCRSCGEFIE-MKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEE---TTE-----------EEETTTCCEEE-EEEECTTTCSBCEE
T ss_pred ccCccCCCcceec---CCE-----------EECccccchhh-ccccCcchhhHHHH
Confidence 4699999886531 112 33666633222 23456666666655
No 266
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=26.51 E-value=20 Score=33.96 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=24.7
Q ss_pred CCCCCCCCCCchhhcccccccccCCcccccccCC
Q 010335 404 RDAECESPACAPEIRKNRVALVSSDMLCPVTCSP 437 (513)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (513)
+..-++||.|..+|++-.+.--+ ..||| +||+
T Consensus 239 gR~G~pC~~CG~~I~~~~~~gR~-t~~CP-~CQ~ 270 (271)
T 2xzf_A 239 GKTGEKCSRCGAEIQKIKVAGRG-THFCP-VCQQ 270 (271)
T ss_dssp TCTTSBCTTTCCBCEEEEETTEE-EEECT-TTSC
T ss_pred cCCCCCCCCCCCEeeEEEECCCc-eEECC-CCCC
Confidence 33568999999999988776645 78888 6775
No 267
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=26.29 E-value=1.4e+02 Score=20.90 Aligned_cols=52 Identities=23% Similarity=0.546 Sum_probs=32.5
Q ss_pred CccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccc
Q 010335 313 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHG 372 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~ 372 (513)
.......|.+|.+....+..-.|-..+...|.-- +....|.+.=.||.|+..
T Consensus 7 ~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p--------~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDP--------DMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCT--------TCCSCCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCCCcEEECCCCChhhhhhccCC--------CCCCCCCCceECcccccc
Confidence 3456688999998776666666765555555511 111234566679999753
No 268
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=25.81 E-value=21 Score=33.78 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=24.6
Q ss_pred CCCCCCCCCCchhhcccccccccCCcccccccCC
Q 010335 404 RDAECESPACAPEIRKNRVALVSSDMLCPVTCSP 437 (513)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (513)
+..-++||.|..+|++-.+.--+ ..||| +||+
T Consensus 237 gR~g~pC~~CG~~I~~~~~~gR~-t~~CP-~CQ~ 268 (268)
T 1k82_A 237 GRKGEPCRVCGTPIVATKHAQRA-TFYCR-QCQK 268 (268)
T ss_dssp TCTTSBCTTTCCBCEEEEETTEE-EEECT-TTCC
T ss_pred ccCCCCCCCCCCEeeEEEECCCc-eEECC-CCCC
Confidence 44568999999999988776544 77888 6774
No 269
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=25.16 E-value=58 Score=28.55 Aligned_cols=49 Identities=29% Similarity=0.617 Sum_probs=31.3
Q ss_pred ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccc
Q 010335 316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHG 372 (513)
Q Consensus 316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~ 372 (513)
+.+.|.+|.+..-.+..-.|...+...|.. ++....|.+.-.||.|+..
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~--------p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHV--------PTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSS--------SCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccC--------CCCCCCCCCCEECccccCc
Confidence 457899999887777777776555555531 1112334566679999854
No 270
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=24.78 E-value=14 Score=21.15 Aligned_cols=13 Identities=31% Similarity=0.938 Sum_probs=8.4
Q ss_pred CCCCCCCCCCccc
Q 010335 360 PPGSIPCPLCRHG 372 (513)
Q Consensus 360 ~~~~~~Cp~Cr~~ 372 (513)
|.-.+.||+|.+-
T Consensus 3 pef~vqcpvcqq~ 15 (29)
T 3vhs_A 3 PEFQVQCPVCQQM 15 (29)
T ss_dssp --CEEECTTTCCE
T ss_pred CceeeeChHHHHh
Confidence 4456679999864
No 271
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=23.85 E-value=1e+02 Score=23.66 Aligned_cols=51 Identities=25% Similarity=0.538 Sum_probs=30.9
Q ss_pred CccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcc
Q 010335 313 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRH 371 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~ 371 (513)
.....+.|.+|.+..-.+....|-..+-..|. .++-...|.+.-.||.|+.
T Consensus 21 ~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl--------~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 21 LDDSATICRVCQKPGDLVMCNQCEFCFHLDCH--------LPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSCCSSSCSSSCCEECTTSSCEECTTSS--------STTCCCCCSSSCCCCSCCC
T ss_pred cCCCCCcCcCcCCCCCEEECCCCCCceecccC--------CCCCCCCcCCCcCCccccC
Confidence 34567899999988766666666444333333 0122234556667999973
No 272
>1jlp_A PSI-conotoxin PIIIF; multiple disulfide bonds, amidated C-terminus; HET: HYP; NMR {Synthetic} SCOP: j.30.1.4
Probab=23.81 E-value=24 Score=19.56 Aligned_cols=7 Identities=57% Similarity=1.682 Sum_probs=5.8
Q ss_pred ccCCCCC
Q 010335 434 TCSPFPS 440 (513)
Q Consensus 434 ~~~~~~~ 440 (513)
+|.|||-
T Consensus 9 scrpfpg 15 (26)
T 1jlp_A 9 SCRPFPG 15 (26)
T ss_dssp SCCCCTT
T ss_pred cccCCCc
Confidence 6899994
No 273
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=23.44 E-value=24 Score=33.38 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=22.5
Q ss_pred CCCCCCCCchhhcccccccccCCcccccccCC
Q 010335 406 AECESPACAPEIRKNRVALVSSDMLCPVTCSP 437 (513)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (513)
.-++||.|..+|++-.+.--+ ..||| .||+
T Consensus 244 ~g~pC~~CG~~I~~~~~~gR~-t~~CP-~CQ~ 273 (273)
T 3u6p_A 244 QGNPCKRCGTPIEKTVVAGRG-THYCP-RCQR 273 (273)
T ss_dssp TTSBCTTTCCBCEEEEETTEE-EEECT-TTCC
T ss_pred CcCCCCCCCCeEEEEEECCCC-eEECC-CCCC
Confidence 567899999999887776544 77787 5764
No 274
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=23.26 E-value=64 Score=28.88 Aligned_cols=50 Identities=28% Similarity=0.630 Sum_probs=31.4
Q ss_pred cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccc
Q 010335 315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHG 372 (513)
Q Consensus 315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~ 372 (513)
...+.|.+|.+..-.+..-.|...+...|.. ++....|.+.-.||.|+..
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~--------p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHV--------PTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSS--------SCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCC--------CCCCCCCCCCEEeCceeCc
Confidence 3568899999887766776776555555541 1112344556678888843
No 275
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=23.04 E-value=40 Score=25.50 Aligned_cols=32 Identities=28% Similarity=0.537 Sum_probs=24.8
Q ss_pred CccccccchhhhcccceE----EeeCCCcccchhhH
Q 010335 313 SSDDADTCAVCLERACTV----AAEGCRHELCVRCA 344 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v----~~~~Cgh~~C~~C~ 344 (513)
...+...|.+|...+... +...||+.+|..|.
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs 52 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCS 52 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGG
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHh
Confidence 455678899999877544 77788888888887
No 276
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=23.02 E-value=56 Score=30.14 Aligned_cols=48 Identities=19% Similarity=0.457 Sum_probs=32.7
Q ss_pred ccccchhhhcccc-eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335 316 DADTCAVCLERAC-TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 373 (513)
Q Consensus 316 ~~~~C~iC~~~~~-~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i 373 (513)
....|.+|.+-.. .+.+..|++.+-..|......+. +...||.|+...
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~----------~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN----------AEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTC----------SSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhC----------CCCCCCCCCCCC
Confidence 4788999997543 23444588888888887775432 123599999763
No 277
>1pqr_A Alpha-A-conotoxin EIVA; alpha-helix, two disulfide bonds, C-TERM amidation; HET: HYP; NMR {Synthetic} SCOP: j.30.1.3
Probab=22.04 E-value=58 Score=18.91 Aligned_cols=18 Identities=39% Similarity=1.119 Sum_probs=14.4
Q ss_pred cCCCCCCCcCCcccC-CCC
Q 010335 435 CSPFPSVAIPLCTCN-DGP 452 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~-~~~ 452 (513)
|.+||..+--+|.|. |-|
T Consensus 3 cg~ypnaachpc~ckv~rp 21 (31)
T 1pqr_A 3 CGPYPNAACHPCGCKVGRP 21 (31)
T ss_dssp CCSSSSSSCCTTCSSSSCC
T ss_pred cCCCCCcccccccccCCCC
Confidence 889999999999885 444
No 278
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=21.08 E-value=34 Score=25.76 Aligned_cols=33 Identities=24% Similarity=0.626 Sum_probs=25.3
Q ss_pred CccccccchhhhcccceE----EeeCCCcccchhhHh
Q 010335 313 SSDDADTCAVCLERACTV----AAEGCRHELCVRCAL 345 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v----~~~~Cgh~~C~~C~l 345 (513)
...+...|.+|...+... +...||..+|..|..
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 455667899999877644 778888889988873
No 279
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.48 E-value=44 Score=27.44 Aligned_cols=34 Identities=15% Similarity=0.535 Sum_probs=26.4
Q ss_pred CccccccchhhhcccceE----EeeCCCcccchhhHhH
Q 010335 313 SSDDADTCAVCLERACTV----AAEGCRHELCVRCALY 346 (513)
Q Consensus 313 s~~~~~~C~iC~~~~~~v----~~~~Cgh~~C~~C~l~ 346 (513)
.......|.+|...+... +...||+.+|..|...
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 445667899999877644 7888999999998743
No 280
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=20.09 E-value=31 Score=32.37 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=22.3
Q ss_pred CCCCCCCCchhhcccccccccCCcccccccCC
Q 010335 406 AECESPACAPEIRKNRVALVSSDMLCPVTCSP 437 (513)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (513)
..++||.|..+|++-.+.--+ ..||| +||+
T Consensus 233 ~g~pC~~CG~~I~~~~~~gR~-t~~CP-~CQ~ 262 (262)
T 1k3x_A 233 DGEPCERCGSIIEKTTLSSRP-FYWCP-GCQH 262 (262)
T ss_dssp TTSBCTTTCCBCEEEEETTEE-EEECT-TTCC
T ss_pred CcCCCCCCCCEeEEEEECCCC-eEECC-CCCC
Confidence 567899999999987776544 77787 4664
Done!