Query 010338
Match_columns 513
No_of_seqs 333 out of 1824
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 2.6E-53 9E-58 450.8 32.4 313 197-512 90-437 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 3.4E-53 1.2E-57 449.8 25.7 313 197-512 75-422 (423)
3 3iyd_F RNA polymerase sigma fa 100.0 2.6E-41 8.9E-46 373.8 3.7 246 264-512 361-611 (613)
4 3ugo_A RNA polymerase sigma fa 100.0 2E-36 6.9E-41 299.6 15.8 210 197-409 3-245 (245)
5 1rp3_A RNA polymerase sigma fa 100.0 6.1E-31 2.1E-35 253.1 20.4 224 272-503 10-235 (239)
6 1l0o_C Sigma factor; bergerat 100.0 3.5E-31 1.2E-35 254.6 5.9 222 265-500 19-243 (243)
7 1or7_A Sigma-24, RNA polymeras 99.9 3.6E-21 1.2E-25 179.8 17.1 176 263-503 12-188 (194)
8 2q1z_A RPOE, ECF SIGE; ECF sig 99.9 3.7E-22 1.3E-26 185.3 8.4 166 263-502 15-182 (184)
9 3mzy_A RNA polymerase sigma-H 99.8 4.4E-20 1.5E-24 166.8 12.5 151 301-504 1-157 (164)
10 2lfw_A PHYR sigma-like domain; 99.6 9.4E-18 3.2E-22 153.7 -2.2 140 276-504 3-142 (157)
11 1sig_A Sigma70, RNA polymerase 99.6 1.4E-15 4.7E-20 156.5 11.9 81 264-347 252-335 (339)
12 3t72_q RNA polymerase sigma fa 99.5 3.3E-14 1.1E-18 121.8 8.8 77 436-512 4-80 (99)
13 3n0r_A Response regulator; sig 99.5 1.2E-14 3.9E-19 146.1 5.7 145 269-504 16-160 (286)
14 2p7v_B Sigma-70, RNA polymeras 99.3 1.9E-12 6.7E-17 102.3 6.6 65 448-512 2-66 (68)
15 1tty_A Sigma-A, RNA polymerase 99.3 6.4E-12 2.2E-16 104.4 8.6 70 443-512 10-79 (87)
16 1ku3_A Sigma factor SIGA; heli 99.3 1.5E-12 5E-17 104.4 4.4 68 445-512 4-72 (73)
17 3hug_A RNA polymerase sigma fa 99.2 5.6E-11 1.9E-15 99.4 9.1 73 428-504 14-86 (92)
18 2o8x_A Probable RNA polymerase 98.9 2.1E-09 7E-14 84.3 7.3 64 440-507 4-67 (70)
19 1h3l_A RNA polymerase sigma fa 98.7 1.2E-08 4.1E-13 83.4 6.1 75 268-347 6-80 (87)
20 1xsv_A Hypothetical UPF0122 pr 98.7 3.5E-08 1.2E-12 86.0 8.3 65 436-504 9-74 (113)
21 2o7g_A Probable RNA polymerase 98.7 4.5E-08 1.5E-12 83.8 8.0 77 265-347 15-91 (112)
22 2rnj_A Response regulator prot 98.6 2.8E-08 9.7E-13 82.7 4.4 64 439-507 17-80 (91)
23 3c57_A Two component transcrip 98.6 7.8E-08 2.7E-12 80.9 6.9 63 440-507 16-78 (95)
24 1x3u_A Transcriptional regulat 98.6 1.1E-07 3.8E-12 76.3 7.2 61 443-508 8-68 (79)
25 3clo_A Transcriptional regulat 98.6 3.5E-10 1.2E-14 111.5 -9.3 159 264-508 87-249 (258)
26 1s7o_A Hypothetical UPF0122 pr 98.5 1.8E-07 6.3E-12 81.5 7.3 61 441-505 11-72 (113)
27 1jhg_A Trp operon repressor; c 98.5 7.3E-08 2.5E-12 82.5 3.9 63 441-504 24-90 (101)
28 1je8_A Nitrate/nitrite respons 98.4 2E-07 6.9E-12 76.3 5.6 60 444-508 14-73 (82)
29 1fse_A GERE; helix-turn-helix 98.3 8.9E-07 3.1E-11 69.8 5.9 59 445-508 5-63 (74)
30 3ulq_B Transcriptional regulat 98.0 1.4E-05 4.9E-10 66.6 7.2 56 447-507 25-80 (90)
31 2jpc_A SSRB; DNA binding prote 97.9 1E-05 3.6E-10 61.5 5.0 49 454-507 1-49 (61)
32 1p4w_A RCSB; solution structur 97.9 2.1E-05 7.1E-10 66.9 6.5 53 450-507 33-85 (99)
33 2q0o_A Probable transcriptiona 97.4 0.00028 9.5E-09 68.0 7.4 52 451-507 175-226 (236)
34 1l3l_A Transcriptional activat 97.3 0.00032 1.1E-08 67.6 7.2 52 451-507 173-224 (234)
35 3szt_A QCSR, quorum-sensing co 97.2 0.00051 1.7E-08 66.5 6.9 53 450-507 174-226 (237)
36 3qp6_A CVIR transcriptional re 97.1 0.00063 2.2E-08 67.2 6.8 51 451-506 197-247 (265)
37 1tc3_C Protein (TC3 transposas 96.9 0.00097 3.3E-08 47.3 4.7 40 451-494 5-44 (51)
38 1yio_A Response regulatory pro 96.7 0.0062 2.1E-07 56.0 9.2 59 445-508 136-194 (208)
39 2w7n_A TRFB transcriptional re 96.6 0.0049 1.7E-07 52.5 7.0 46 451-500 18-63 (101)
40 2x48_A CAG38821; archeal virus 96.3 0.0025 8.6E-08 47.1 3.1 39 452-495 17-55 (55)
41 1a04_A Nitrate/nitrite respons 96.1 0.011 3.9E-07 54.6 7.5 53 450-507 153-205 (215)
42 3c3w_A Two component transcrip 95.7 0.018 6E-07 54.2 6.9 52 450-506 148-199 (225)
43 3klo_A Transcriptional regulat 95.1 0.025 8.6E-07 52.9 5.8 53 449-506 157-209 (225)
44 3iyd_F RNA polymerase sigma fa 95.1 0.006 2E-07 67.3 1.5 38 195-232 90-127 (613)
45 3p7n_A Sensor histidine kinase 95.0 0.079 2.7E-06 50.1 9.0 64 440-508 187-250 (258)
46 1jko_C HIN recombinase, DNA-in 93.4 0.059 2E-06 38.2 3.4 25 470-494 20-44 (52)
47 1p2f_A Response regulator; DRR 92.4 0.11 3.7E-06 48.1 4.5 51 451-502 145-198 (220)
48 1qgp_A Protein (double strande 92.1 0.12 4.2E-06 41.4 3.8 41 454-494 14-54 (77)
49 2gwr_A DNA-binding response re 91.9 0.16 5.4E-06 47.8 5.1 51 451-502 153-208 (238)
50 2oqr_A Sensory transduction pr 91.5 0.14 4.8E-06 47.5 4.2 51 451-502 156-211 (230)
51 1kgs_A DRRD, DNA binding respo 91.3 0.13 4.6E-06 47.4 3.8 52 451-503 151-207 (225)
52 1u78_A TC3 transposase, transp 91.3 0.2 6.9E-06 43.1 4.7 40 451-494 6-45 (141)
53 1qbj_A Protein (double-strande 91.2 0.28 9.6E-06 39.8 5.2 42 455-500 11-52 (81)
54 1pdn_C Protein (PRD paired); p 90.9 0.3 1E-05 40.9 5.4 42 451-496 17-58 (128)
55 3kor_A Possible Trp repressor; 90.8 0.19 6.5E-06 43.8 4.0 35 451-491 61-95 (119)
56 1ys7_A Transcriptional regulat 90.5 0.13 4.5E-06 47.7 3.0 52 451-503 159-215 (233)
57 3ugo_A RNA polymerase sigma fa 90.1 0.056 1.9E-06 52.8 0.0 52 444-500 191-244 (245)
58 1zx4_A P1 PARB, plasmid partit 89.4 0.26 8.8E-06 46.5 4.0 35 457-496 15-49 (192)
59 1k78_A Paired box protein PAX5 89.1 0.48 1.7E-05 41.6 5.4 43 451-497 32-74 (149)
60 3q9s_A DNA-binding response re 89.0 0.23 7.9E-06 47.4 3.4 54 451-505 182-240 (249)
61 1oyi_A Double-stranded RNA-bin 88.4 0.38 1.3E-05 39.3 3.8 24 471-494 30-53 (82)
62 2elh_A CG11849-PA, LD40883P; s 88.3 0.65 2.2E-05 37.5 5.2 27 470-496 37-63 (87)
63 2hqr_A Putative transcriptiona 88.3 0.14 4.7E-06 47.4 1.2 51 451-502 143-198 (223)
64 3r0a_A Putative transcriptiona 88.2 0.79 2.7E-05 39.5 6.0 45 448-494 20-65 (123)
65 2dbb_A Putative HTH-type trans 87.8 0.74 2.5E-05 40.6 5.8 42 450-494 5-46 (151)
66 1sfx_A Conserved hypothetical 87.8 1.1 3.9E-05 36.1 6.5 41 451-494 17-57 (109)
67 2o3f_A Putative HTH-type trans 87.6 1.2 4.1E-05 37.9 6.7 52 442-493 9-61 (111)
68 2w48_A Sorbitol operon regulat 87.6 0.62 2.1E-05 46.6 5.7 36 458-497 12-47 (315)
69 2heo_A Z-DNA binding protein 1 87.0 0.63 2.1E-05 36.0 4.2 40 452-493 8-47 (67)
70 3k2z_A LEXA repressor; winged 86.9 0.55 1.9E-05 43.7 4.5 42 451-492 2-45 (196)
71 2cfx_A HTH-type transcriptiona 86.9 0.93 3.2E-05 39.8 5.8 41 451-494 2-42 (144)
72 3r0j_A Possible two component 86.3 0.96 3.3E-05 42.7 6.0 50 451-501 176-230 (250)
73 2d1h_A ST1889, 109AA long hypo 86.1 1.2 4E-05 36.1 5.6 44 449-494 16-59 (109)
74 2w25_A Probable transcriptiona 86.0 1.1 3.7E-05 39.5 5.8 41 451-494 4-44 (150)
75 3bpv_A Transcriptional regulat 85.9 1.9 6.5E-05 36.4 7.2 51 441-494 14-66 (138)
76 3ech_A MEXR, multidrug resista 85.8 1.4 5E-05 37.7 6.4 52 441-495 20-75 (142)
77 2cyy_A Putative HTH-type trans 85.7 1.1 3.9E-05 39.5 5.8 42 451-495 4-45 (151)
78 2gxg_A 146AA long hypothetical 85.5 2.4 8.1E-05 36.2 7.7 47 444-494 25-73 (146)
79 2jn6_A Protein CGL2762, transp 85.5 1.4 4.7E-05 35.9 5.8 40 452-495 6-47 (97)
80 2p5v_A Transcriptional regulat 85.4 1.2 4E-05 39.9 5.7 41 451-494 7-47 (162)
81 2x4h_A Hypothetical protein SS 85.4 1.1 3.8E-05 38.5 5.4 47 448-494 7-54 (139)
82 1r1u_A CZRA, repressor protein 85.3 2.1 7.3E-05 35.4 7.0 47 444-494 15-62 (106)
83 3tgn_A ADC operon repressor AD 85.3 1.4 4.8E-05 37.8 6.0 40 451-494 35-74 (146)
84 1i1g_A Transcriptional regulat 85.0 1 3.5E-05 39.0 5.0 40 452-494 2-41 (141)
85 2cg4_A Regulatory protein ASNC 85.0 1.3 4.3E-05 39.2 5.7 42 451-495 5-46 (152)
86 2pn6_A ST1022, 150AA long hypo 84.8 1.4 4.8E-05 38.6 5.9 40 452-494 1-40 (150)
87 1ku9_A Hypothetical protein MJ 84.6 2.2 7.6E-05 36.3 7.0 50 443-494 13-64 (152)
88 3bro_A Transcriptional regulat 84.4 3 0.0001 35.3 7.7 53 441-494 19-73 (141)
89 3frw_A Putative Trp repressor 84.3 2.2 7.4E-05 36.5 6.5 40 452-491 37-78 (107)
90 3cdh_A Transcriptional regulat 84.2 2.9 9.8E-05 36.3 7.7 51 441-494 28-80 (155)
91 3cuo_A Uncharacterized HTH-typ 84.1 1.5 5.1E-05 35.2 5.4 45 447-494 16-61 (99)
92 3i4p_A Transcriptional regulat 84.1 1.5 5.3E-05 39.3 6.0 40 452-494 1-40 (162)
93 1jgs_A Multiple antibiotic res 83.8 2.5 8.7E-05 35.7 7.0 53 440-495 18-72 (138)
94 2nnn_A Probable transcriptiona 83.4 2 6.9E-05 36.3 6.2 49 443-494 26-75 (140)
95 3jth_A Transcription activator 83.3 1.9 6.4E-05 35.0 5.7 45 445-493 13-58 (98)
96 2glo_A Brinker CG9653-PA; prot 83.2 1.2 4.2E-05 33.1 4.1 26 470-495 20-49 (59)
97 3bdd_A Regulatory protein MARR 83.1 2.8 9.7E-05 35.4 7.0 42 451-495 28-69 (142)
98 2k27_A Paired box protein PAX- 83.1 0.54 1.8E-05 41.9 2.4 40 451-494 25-64 (159)
99 3iwf_A Transcription regulator 83.0 2.1 7.2E-05 36.2 6.0 53 442-494 5-58 (107)
100 2fbh_A Transcriptional regulat 82.8 2.7 9.1E-05 35.8 6.7 52 441-494 22-75 (146)
101 4hbl_A Transcriptional regulat 82.7 3.3 0.00011 35.8 7.4 50 443-495 28-79 (149)
102 2e1c_A Putative HTH-type trans 82.6 1.8 6E-05 39.5 5.7 41 451-494 24-64 (171)
103 3hsr_A HTH-type transcriptiona 82.6 2.4 8.4E-05 36.3 6.4 53 440-495 20-74 (140)
104 3eco_A MEPR; mutlidrug efflux 82.5 3.2 0.00011 35.2 7.1 54 440-494 15-70 (139)
105 3bj6_A Transcriptional regulat 82.4 2.8 9.5E-05 36.1 6.8 49 443-494 27-77 (152)
106 3g3z_A NMB1585, transcriptiona 82.4 3 0.0001 35.7 6.9 50 442-494 17-68 (145)
107 2htj_A P fimbrial regulatory p 82.4 1.9 6.5E-05 34.0 5.2 25 470-494 13-37 (81)
108 2pex_A Transcriptional regulat 82.3 2.5 8.5E-05 36.6 6.4 52 441-495 32-85 (153)
109 2lkp_A Transcriptional regulat 82.2 4.5 0.00015 33.8 7.8 47 444-494 21-68 (119)
110 2rdp_A Putative transcriptiona 82.1 3.4 0.00012 35.4 7.2 51 442-495 28-80 (150)
111 3mn2_A Probable ARAC family tr 82.0 13 0.00046 30.3 10.6 38 365-402 4-41 (108)
112 3pqk_A Biofilm growth-associat 82.0 3.4 0.00012 33.7 6.8 46 444-493 12-58 (102)
113 4b8x_A SCO5413, possible MARR- 81.9 2.6 8.9E-05 36.9 6.4 54 440-494 19-74 (147)
114 2fa5_A Transcriptional regulat 81.8 4.7 0.00016 35.0 8.2 51 442-495 34-87 (162)
115 1uxc_A FRUR (1-57), fructose r 81.6 1.2 4E-05 34.5 3.5 23 472-494 1-23 (65)
116 2oqg_A Possible transcriptiona 81.5 2.6 9E-05 34.8 6.0 46 445-494 11-57 (114)
117 3oou_A LIN2118 protein; protei 81.4 19 0.00064 29.4 11.3 38 365-402 7-44 (108)
118 3k0l_A Repressor protein; heli 81.4 2.9 0.0001 36.7 6.6 52 440-494 30-83 (162)
119 1lj9_A Transcriptional regulat 81.4 2.3 7.7E-05 36.3 5.7 52 441-495 14-67 (144)
120 2l0k_A Stage III sporulation p 81.3 1.2 4E-05 37.1 3.7 38 454-495 7-44 (93)
121 2ia0_A Putative HTH-type trans 81.3 2.1 7.2E-05 38.9 5.8 42 450-494 13-54 (171)
122 1jhf_A LEXA repressor; LEXA SO 81.2 0.83 2.8E-05 42.3 3.0 45 450-494 2-49 (202)
123 2a61_A Transcriptional regulat 81.1 2.5 8.7E-05 36.0 6.0 41 451-494 30-70 (145)
124 1r1t_A Transcriptional repress 81.0 3.6 0.00012 35.2 6.9 45 446-494 37-82 (122)
125 3oio_A Transcriptional regulat 80.7 10 0.00035 31.3 9.6 39 364-402 8-46 (113)
126 3nqo_A MARR-family transcripti 80.7 3.7 0.00013 37.4 7.2 53 441-494 28-80 (189)
127 2qww_A Transcriptional regulat 80.6 3.8 0.00013 35.4 7.0 49 444-495 29-79 (154)
128 2jt1_A PEFI protein; solution 80.6 2.4 8.1E-05 34.0 5.1 26 377-402 22-47 (77)
129 1sfu_A 34L protein; protein/Z- 80.4 2.7 9.1E-05 33.7 5.3 26 469-494 27-52 (75)
130 1q1h_A TFE, transcription fact 80.4 1.3 4.4E-05 36.8 3.7 43 452-500 16-58 (110)
131 1s3j_A YUSO protein; structura 80.3 2.5 8.7E-05 36.5 5.8 49 443-494 24-74 (155)
132 3oop_A LIN2960 protein; protei 80.3 2.5 8.7E-05 36.1 5.7 51 441-494 22-74 (143)
133 2zkz_A Transcriptional repress 80.1 2 6.9E-05 35.2 4.8 38 453-493 26-63 (99)
134 3cjn_A Transcriptional regulat 80.1 2.6 8.8E-05 36.9 5.8 42 451-495 49-90 (162)
135 1u78_A TC3 transposase, transp 79.9 9 0.00031 32.4 9.1 77 380-494 23-102 (141)
136 2k9s_A Arabinose operon regula 79.8 13 0.00043 30.4 9.7 38 365-402 5-43 (107)
137 3fm5_A Transcriptional regulat 79.7 4.7 0.00016 34.7 7.3 53 440-494 23-77 (150)
138 2nyx_A Probable transcriptiona 79.5 3 0.0001 37.0 6.1 50 442-494 29-82 (168)
139 2qvo_A Uncharacterized protein 79.5 1.6 5.4E-05 35.5 3.9 45 451-495 9-54 (95)
140 3nrv_A Putative transcriptiona 79.4 2.6 9E-05 36.1 5.5 42 451-495 37-78 (148)
141 1uly_A Hypothetical protein PH 79.2 3 0.0001 38.8 6.2 39 452-494 18-56 (192)
142 2kko_A Possible transcriptiona 79.1 2.2 7.4E-05 35.6 4.7 46 445-494 15-61 (108)
143 3bja_A Transcriptional regulat 78.9 2 6.9E-05 36.3 4.5 51 442-495 19-71 (139)
144 3sqn_A Conserved domain protei 78.8 2.4 8.4E-05 45.1 6.1 118 366-501 21-138 (485)
145 4fx0_A Probable transcriptiona 78.8 6.1 0.00021 34.6 7.8 55 441-495 18-76 (148)
146 2fu4_A Ferric uptake regulatio 78.7 3.7 0.00013 32.2 5.7 41 451-493 14-60 (83)
147 1y0u_A Arsenical resistance op 78.5 2.7 9.1E-05 34.1 5.0 36 453-493 30-65 (96)
148 3s2w_A Transcriptional regulat 78.1 3.4 0.00012 36.1 5.9 53 440-495 34-88 (159)
149 3o9x_A Uncharacterized HTH-typ 78.1 5.3 0.00018 34.2 7.1 39 450-494 69-107 (133)
150 2a6c_A Helix-turn-helix motif; 78.0 2.4 8.3E-05 33.4 4.4 26 469-494 29-54 (83)
151 3qq6_A HTH-type transcriptiona 77.5 2.1 7.2E-05 33.4 3.9 26 469-494 21-46 (78)
152 3kp7_A Transcriptional regulat 77.2 3.3 0.00011 35.8 5.5 49 443-495 25-75 (151)
153 2xi8_A Putative transcription 77.0 2 6.9E-05 31.4 3.5 25 470-494 13-37 (66)
154 3f3x_A Transcriptional regulat 76.9 5.6 0.00019 33.9 6.9 41 451-495 34-74 (144)
155 1zug_A Phage 434 CRO protein; 76.8 2.3 7.9E-05 31.7 3.8 25 470-494 15-39 (71)
156 3fmy_A HTH-type transcriptiona 76.7 2.4 8.1E-05 32.7 4.0 37 452-494 11-47 (73)
157 1p6r_A Penicillinase repressor 76.7 2.6 9E-05 33.0 4.3 42 450-494 5-50 (82)
158 1r69_A Repressor protein CI; g 76.7 2.4 8E-05 31.4 3.8 25 470-494 13-37 (69)
159 2fbi_A Probable transcriptiona 76.3 2.3 7.9E-05 36.0 4.2 42 451-495 33-74 (142)
160 1xmk_A Double-stranded RNA-spe 76.2 1.6 5.5E-05 35.2 2.9 37 455-494 12-49 (79)
161 3e6m_A MARR family transcripti 76.1 3.8 0.00013 35.9 5.6 52 441-495 38-91 (161)
162 3f6o_A Probable transcriptiona 75.9 2.4 8.3E-05 35.8 4.1 45 445-493 8-53 (118)
163 2jt1_A PEFI protein; solution 75.5 1.9 6.6E-05 34.5 3.2 25 470-494 23-47 (77)
164 3kz3_A Repressor protein CI; f 75.5 1.9 6.4E-05 33.6 3.1 25 470-494 24-48 (80)
165 1y7y_A C.AHDI; helix-turn-heli 75.4 2.7 9.1E-05 31.6 3.9 25 470-494 25-49 (74)
166 4aik_A Transcriptional regulat 75.3 7.7 0.00026 34.0 7.4 52 441-494 16-69 (151)
167 3b7h_A Prophage LP1 protein 11 75.2 3.1 0.0001 31.7 4.2 25 470-494 19-43 (78)
168 3eus_A DNA-binding protein; st 75.2 2.5 8.7E-05 33.5 3.9 26 469-494 25-50 (86)
169 1hlv_A CENP-B, major centromer 75.2 3.4 0.00012 35.2 4.9 45 451-498 7-52 (131)
170 2b5a_A C.BCLI; helix-turn-heli 75.1 2.7 9.3E-05 31.9 3.9 25 470-494 22-46 (77)
171 2eth_A Transcriptional regulat 74.8 3 0.0001 36.2 4.6 42 451-495 41-82 (154)
172 2r1j_L Repressor protein C2; p 74.5 2.2 7.4E-05 31.5 3.1 25 470-494 17-41 (68)
173 2p5k_A Arginine repressor; DNA 74.5 3.7 0.00013 30.4 4.4 25 469-493 17-46 (64)
174 1u2w_A CADC repressor, cadmium 74.4 4 0.00014 34.8 5.2 39 453-494 41-79 (122)
175 2bv6_A MGRA, HTH-type transcri 74.4 2.8 9.5E-05 35.7 4.2 41 451-494 34-74 (142)
176 3t76_A VANU, transcriptional r 74.4 2.7 9.4E-05 34.1 3.9 26 469-494 35-60 (88)
177 3omt_A Uncharacterized protein 74.4 2.2 7.4E-05 32.5 3.1 25 470-494 20-44 (73)
178 3f6w_A XRE-family like protein 74.4 2.1 7.2E-05 33.3 3.1 25 470-494 26-50 (83)
179 2frh_A SARA, staphylococcal ac 74.4 4.2 0.00014 34.6 5.3 50 444-494 25-76 (127)
180 2k9q_A Uncharacterized protein 74.2 2.1 7.3E-05 32.9 3.1 25 470-494 14-38 (77)
181 2wiu_B HTH-type transcriptiona 74.2 3.5 0.00012 32.2 4.4 25 470-494 24-48 (88)
182 4ghj_A Probable transcriptiona 74.2 2.7 9.1E-05 35.2 3.8 26 469-494 47-72 (101)
183 1neq_A DNA-binding protein NER 74.1 2.5 8.7E-05 33.2 3.5 25 470-494 21-45 (74)
184 1x57_A Endothelial differentia 73.9 4.3 0.00015 32.2 4.9 26 469-494 24-49 (91)
185 3s8q_A R-M controller protein; 73.8 3 0.0001 32.3 3.9 25 470-494 23-47 (82)
186 3hyi_A Protein DUF199/WHIA; la 73.5 4.1 0.00014 40.8 5.7 45 449-496 241-285 (295)
187 1tbx_A ORF F-93, hypothetical 72.8 2.7 9.3E-05 34.0 3.5 42 451-495 5-50 (99)
188 2ewt_A BLDD, putative DNA-bind 72.8 4.1 0.00014 30.4 4.3 25 470-494 20-46 (71)
189 3mkl_A HTH-type transcriptiona 72.5 22 0.00074 29.7 9.4 37 366-402 10-46 (120)
190 2kpj_A SOS-response transcript 72.4 3.9 0.00013 32.8 4.4 26 469-494 20-45 (94)
191 3deu_A Transcriptional regulat 72.3 7.2 0.00025 34.6 6.6 53 440-494 37-91 (166)
192 3lsg_A Two-component response 72.2 36 0.0012 27.3 11.9 36 367-402 6-42 (103)
193 1adr_A P22 C2 repressor; trans 72.0 2.6 9E-05 31.8 3.1 25 470-494 17-41 (76)
194 2ef8_A C.ECOT38IS, putative tr 71.8 3.6 0.00012 31.8 3.9 25 470-494 22-46 (84)
195 2rn7_A IS629 ORFA; helix, all 71.6 2.1 7.3E-05 35.4 2.7 25 472-496 31-55 (108)
196 1ais_B TFB TFIIB, protein (tra 71.4 58 0.002 29.6 12.8 121 376-500 66-194 (200)
197 2hr3_A Probable transcriptiona 71.4 4.1 0.00014 34.8 4.6 42 452-495 33-74 (147)
198 1ub9_A Hypothetical protein PH 71.3 3 0.0001 33.3 3.4 39 453-494 15-53 (100)
199 2wus_R RODZ, putative uncharac 70.8 5 0.00017 34.1 4.8 26 469-494 18-43 (112)
200 3bs3_A Putative DNA-binding pr 70.7 3.5 0.00012 31.2 3.5 25 470-494 22-46 (76)
201 2jsc_A Transcriptional regulat 70.6 4.1 0.00014 34.5 4.3 41 453-501 20-60 (118)
202 1xn7_A Hypothetical protein YH 70.5 5.5 0.00019 31.8 4.7 26 469-494 14-39 (78)
203 1on2_A Transcriptional regulat 70.3 3.4 0.00012 35.5 3.8 43 452-494 2-45 (142)
204 2wte_A CSA3; antiviral protein 70.2 6.2 0.00021 38.1 6.0 44 448-494 146-189 (244)
205 2ppx_A AGR_C_3184P, uncharacte 69.8 3.7 0.00013 33.4 3.7 25 470-494 42-66 (99)
206 1bl0_A Protein (multiple antib 69.7 21 0.00071 30.3 8.7 39 364-402 12-50 (129)
207 2fxa_A Protease production reg 69.6 8.4 0.00029 35.8 6.6 48 444-494 36-85 (207)
208 3jw4_A Transcriptional regulat 69.6 3.6 0.00012 35.4 3.8 51 443-494 28-80 (148)
209 2fbk_A Transcriptional regulat 69.6 4.7 0.00016 36.1 4.7 55 441-495 54-110 (181)
210 2dk5_A DNA-directed RNA polyme 69.6 3.3 0.00011 34.1 3.3 44 450-494 16-59 (91)
211 3boq_A Transcriptional regulat 69.4 6.3 0.00022 34.2 5.4 52 442-495 32-86 (160)
212 3bd1_A CRO protein; transcript 68.6 4.1 0.00014 31.5 3.6 23 471-494 12-34 (79)
213 2l8n_A Transcriptional repress 68.5 2.2 7.7E-05 33.0 2.0 23 471-493 9-31 (67)
214 3g5g_A Regulatory protein; tra 68.5 4.4 0.00015 33.3 3.9 25 470-494 40-64 (99)
215 2o38_A Hypothetical protein; a 68.1 4.3 0.00015 34.8 3.9 26 469-494 51-76 (120)
216 2hin_A GP39, repressor protein 67.7 4.3 0.00015 32.0 3.5 22 473-494 12-33 (71)
217 2b0l_A GTP-sensing transcripti 67.6 9 0.00031 31.9 5.7 27 471-501 42-69 (102)
218 1gdt_A GD resolvase, protein ( 67.5 5.7 0.0002 36.1 4.9 24 470-493 157-180 (183)
219 1z91_A Organic hydroperoxide r 67.2 4.4 0.00015 34.6 3.8 50 445-497 29-80 (147)
220 3trb_A Virulence-associated pr 67.1 5.4 0.00018 33.3 4.2 25 469-493 25-49 (104)
221 3u2r_A Regulatory protein MARR 67.0 5.6 0.00019 35.1 4.6 55 440-495 30-86 (168)
222 3mky_B Protein SOPB; partition 67.0 7.1 0.00024 36.6 5.4 48 447-495 19-66 (189)
223 1okr_A MECI, methicillin resis 66.9 3.3 0.00011 34.7 2.9 45 449-496 5-53 (123)
224 2hzt_A Putative HTH-type trans 66.9 5.1 0.00018 33.2 4.1 46 445-494 4-51 (107)
225 1lmb_3 Protein (lambda repress 66.9 3.7 0.00013 32.5 3.1 25 470-494 29-53 (92)
226 1rzs_A Antirepressor, regulato 66.7 2.4 8.1E-05 31.9 1.7 21 472-492 11-31 (61)
227 2pij_A Prophage PFL 6 CRO; tra 66.6 5.6 0.00019 29.5 3.9 23 470-493 13-35 (67)
228 2r0q_C Putative transposon TN5 66.0 5.8 0.0002 36.9 4.7 24 470-493 174-197 (209)
229 2gau_A Transcriptional regulat 65.9 20 0.00067 32.7 8.3 49 449-501 148-206 (232)
230 3kxa_A NGO0477 protein, putati 65.8 5.1 0.00018 35.2 4.0 26 469-494 79-104 (141)
231 3b73_A PHIH1 repressor-like pr 65.3 5.3 0.00018 34.1 3.8 40 452-494 11-52 (111)
232 1z4h_A TORI, TOR inhibition pr 64.9 5 0.00017 30.6 3.3 25 471-495 10-34 (66)
233 2ict_A Antitoxin HIGA; helix-t 64.9 5.3 0.00018 31.9 3.7 25 470-494 20-44 (94)
234 3vk0_A NHTF, transcriptional r 64.8 4.6 0.00016 33.7 3.4 25 470-494 33-57 (114)
235 2ek5_A Predicted transcription 64.6 6.7 0.00023 34.0 4.5 29 469-501 25-54 (129)
236 2k02_A Ferrous iron transport 64.4 6.2 0.00021 32.3 4.0 25 470-494 15-39 (87)
237 2g9w_A Conserved hypothetical 64.3 8.4 0.00029 33.3 5.1 44 450-495 5-52 (138)
238 2auw_A Hypothetical protein NE 64.0 5.3 0.00018 36.8 3.8 37 452-494 90-126 (170)
239 3mlf_A Transcriptional regulat 63.8 6.2 0.00021 33.0 4.0 25 470-494 35-59 (111)
240 1j5y_A Transcriptional regulat 63.5 7.9 0.00027 35.4 5.0 39 454-494 21-59 (187)
241 3op9_A PLI0006 protein; struct 63.4 5.6 0.00019 32.9 3.7 25 470-494 21-45 (114)
242 1b0n_A Protein (SINR protein); 62.7 6.5 0.00022 32.0 3.9 25 470-494 13-37 (111)
243 1l9z_H Sigma factor SIGA; heli 62.6 83 0.0028 33.0 13.2 26 378-403 394-419 (438)
244 1r71_A Transcriptional repress 62.5 7.7 0.00026 35.8 4.7 41 450-493 34-74 (178)
245 1z7u_A Hypothetical protein EF 62.4 7.8 0.00027 32.3 4.4 46 445-494 12-59 (112)
246 2cw1_A SN4M; lambda CRO fold, 62.3 6.6 0.00022 30.3 3.5 22 472-493 14-35 (65)
247 4ham_A LMO2241 protein; struct 62.3 5.8 0.0002 34.4 3.6 28 470-501 36-64 (134)
248 2o0m_A Transcriptional regulat 62.0 1.6 5.6E-05 44.1 0.0 42 452-496 18-59 (345)
249 2l49_A C protein; P2 bacteriop 62.0 5.8 0.0002 31.8 3.4 25 470-494 16-40 (99)
250 3ivp_A Putative transposon-rel 61.5 8.1 0.00028 32.6 4.4 25 470-494 24-48 (126)
251 3fym_A Putative uncharacterize 60.8 7.1 0.00024 33.7 3.9 27 469-495 14-40 (130)
252 1sd4_A Penicillinase repressor 60.4 7.7 0.00026 32.4 4.0 43 450-495 6-52 (126)
253 2eby_A Putative HTH-type trans 60.2 7.6 0.00026 32.1 3.9 26 469-494 22-47 (113)
254 3cec_A Putative antidote prote 60.0 5.8 0.0002 32.3 3.1 25 470-494 30-54 (104)
255 3k2z_A LEXA repressor; winged 59.9 14 0.00046 34.0 6.0 40 363-402 8-47 (196)
256 3e7l_A Transcriptional regulat 59.9 8.1 0.00028 29.0 3.7 35 456-493 20-54 (63)
257 3qwg_A ESX-1 secretion-associa 59.8 6.4 0.00022 34.0 3.4 25 469-493 22-51 (123)
258 3neu_A LIN1836 protein; struct 59.7 9 0.00031 32.8 4.4 28 470-501 35-63 (125)
259 2jrt_A Uncharacterized protein 59.0 9.3 0.00032 31.7 4.1 27 469-495 47-73 (95)
260 3f52_A CLP gene regulator (CLG 58.9 6.1 0.00021 32.9 3.1 25 470-494 40-64 (117)
261 3lfp_A CSP231I C protein; tran 58.9 7.7 0.00026 31.2 3.6 25 470-494 13-41 (98)
262 1g2h_A Transcriptional regulat 58.5 8.1 0.00028 29.0 3.4 22 472-493 34-55 (61)
263 1fx7_A Iron-dependent represso 58.5 3.3 0.00011 39.3 1.5 43 451-494 3-47 (230)
264 1j1v_A Chromosomal replication 58.3 19 0.00064 29.6 5.9 31 470-500 45-76 (94)
265 2ao9_A Phage protein; structur 58.0 8.8 0.0003 34.8 4.1 44 450-493 22-70 (155)
266 3k2a_A Homeobox protein MEIS2; 57.9 30 0.001 26.3 6.7 55 451-505 4-62 (67)
267 3ryp_A Catabolite gene activat 57.7 30 0.001 30.7 7.9 27 471-501 167-193 (210)
268 2kfs_A Conserved hypothetical 57.6 5.2 0.00018 36.1 2.5 24 471-494 31-54 (148)
269 2vn2_A DNAD, chromosome replic 57.6 13 0.00045 31.9 5.1 44 452-495 30-75 (128)
270 3r1f_A ESX-1 secretion-associa 57.2 7.3 0.00025 34.1 3.4 25 469-493 24-53 (135)
271 1pdn_C Protein (PRD paired); p 57.1 22 0.00074 29.1 6.3 24 380-403 34-57 (128)
272 1k61_A Mating-type protein alp 57.0 21 0.00073 26.2 5.5 52 451-502 4-59 (60)
273 2vz4_A Tipal, HTH-type transcr 57.0 6.1 0.00021 33.1 2.7 26 471-496 1-26 (108)
274 3bdn_A Lambda repressor; repre 56.9 6.2 0.00021 36.9 3.1 26 469-494 28-53 (236)
275 2y75_A HTH-type transcriptiona 56.6 13 0.00045 31.6 4.9 25 469-493 24-48 (129)
276 1j9i_A GPNU1 DBD;, terminase s 56.1 5.5 0.00019 30.3 2.1 25 472-496 3-27 (68)
277 2k9l_A RNA polymerase sigma fa 56.1 21 0.00073 28.0 5.7 52 438-492 15-69 (76)
278 2da1_A Alpha-fetoprotein enhan 55.7 27 0.00092 26.5 6.1 52 452-503 14-66 (70)
279 1k78_A Paired box protein PAX5 55.2 36 0.0012 29.3 7.6 24 380-403 49-72 (149)
280 3f6v_A Possible transcriptiona 55.1 7.9 0.00027 34.5 3.3 37 453-493 57-93 (151)
281 2jvl_A TRMBF1; coactivator, he 54.7 7 0.00024 32.4 2.7 25 470-494 48-72 (107)
282 3tqn_A Transcriptional regulat 54.7 9 0.00031 32.2 3.5 28 470-501 31-59 (113)
283 3gbg_A TCP pilus virulence reg 54.6 78 0.0027 29.8 10.6 37 365-401 171-207 (276)
284 1hw1_A FADR, fatty acid metabo 54.5 11 0.00037 35.4 4.3 29 469-501 28-57 (239)
285 4a0z_A Transcription factor FA 54.5 13 0.00044 34.6 4.8 42 454-502 12-53 (190)
286 3c7j_A Transcriptional regulat 54.4 11 0.00037 35.9 4.3 29 469-501 47-75 (237)
287 1y6u_A XIS, excisionase from t 54.0 7.6 0.00026 30.4 2.6 24 471-494 16-39 (70)
288 2bnm_A Epoxidase; oxidoreducta 53.9 10 0.00034 34.4 3.9 25 470-494 22-46 (198)
289 3b02_A Transcriptional regulat 53.7 33 0.0011 30.4 7.4 49 449-501 107-165 (195)
290 1bia_A BIRA bifunctional prote 53.5 17 0.00057 36.3 5.8 44 452-499 3-46 (321)
291 3mn2_A Probable ARAC family tr 53.4 18 0.00063 29.4 5.2 27 469-495 16-42 (108)
292 2l1p_A DNA-binding protein SAT 53.4 8.7 0.0003 31.2 2.9 24 471-494 32-55 (83)
293 2h09_A Transcriptional regulat 53.2 8.7 0.0003 33.5 3.2 25 470-494 53-77 (155)
294 2zcw_A TTHA1359, transcription 53.2 40 0.0014 29.9 7.9 49 449-501 114-172 (202)
295 3uj3_X DNA-invertase; helix-tu 53.1 2.8 9.7E-05 38.5 0.0 26 470-495 157-182 (193)
296 1y9q_A Transcriptional regulat 53.0 10 0.00035 34.3 3.8 25 470-494 23-47 (192)
297 3oou_A LIN2118 protein; protei 52.9 21 0.00072 29.1 5.5 27 469-495 19-45 (108)
298 3a02_A Homeobox protein arista 52.9 23 0.00078 26.1 5.1 52 451-502 5-57 (60)
299 3lsg_A Two-component response 52.8 22 0.00076 28.6 5.5 25 471-495 19-43 (103)
300 1v4r_A Transcriptional repress 52.7 6.2 0.00021 32.3 2.1 28 470-501 33-61 (102)
301 2qq9_A Diphtheria toxin repres 52.7 4.7 0.00016 38.1 1.5 44 450-494 2-47 (226)
302 2p5t_A Putative transcriptiona 52.6 2.9 0.0001 37.2 0.0 26 469-494 12-37 (158)
303 1rr7_A Middle operon regulator 52.6 16 0.00056 31.8 4.9 39 454-498 81-119 (129)
304 2v79_A DNA replication protein 52.5 14 0.0005 32.3 4.5 47 451-497 29-77 (135)
305 4ev0_A Transcription regulator 52.3 20 0.00068 32.1 5.7 28 470-501 162-189 (216)
306 2k40_A Homeobox expressed in E 52.2 35 0.0012 25.6 6.2 53 452-504 8-61 (67)
307 1vz0_A PARB, chromosome partit 52.2 16 0.00054 34.9 5.1 40 451-493 117-156 (230)
308 1rp3_A RNA polymerase sigma fa 51.9 1.4E+02 0.0046 27.0 16.5 37 234-270 101-137 (239)
309 3hrs_A Metalloregulator SCAR; 51.7 14 0.00049 34.5 4.7 28 469-496 18-45 (214)
310 2oz6_A Virulence factor regula 51.6 9.4 0.00032 34.1 3.3 27 471-501 164-190 (207)
311 2hdd_A Protein (engrailed home 51.6 28 0.00096 25.7 5.5 50 452-501 10-60 (61)
312 3iwz_A CAP-like, catabolite ac 51.5 51 0.0017 29.7 8.4 27 471-501 187-213 (230)
313 2f2e_A PA1607; transcription f 51.3 18 0.00061 31.7 5.0 25 470-494 36-60 (146)
314 3by6_A Predicted transcription 51.0 11 0.00038 32.4 3.5 29 469-501 32-61 (126)
315 2da4_A Hypothetical protein DK 50.8 26 0.00089 27.4 5.4 50 452-501 15-69 (80)
316 3dv8_A Transcriptional regulat 50.8 12 0.0004 33.8 3.9 27 471-501 169-195 (220)
317 2ofy_A Putative XRE-family tra 50.8 9.7 0.00033 29.6 2.9 22 473-494 29-50 (86)
318 3sxy_A Transcriptional regulat 50.6 11 0.00037 35.0 3.6 38 458-501 24-61 (218)
319 2ecc_A Homeobox and leucine zi 50.6 25 0.00087 27.9 5.2 51 452-502 10-61 (76)
320 2p4w_A Transcriptional regulat 50.6 16 0.00053 34.2 4.7 44 447-494 7-51 (202)
321 1ft9_A Carbon monoxide oxidati 50.5 12 0.0004 34.2 3.8 27 471-501 163-189 (222)
322 2h8r_A Hepatocyte nuclear fact 50.4 25 0.00085 33.7 6.1 24 470-493 43-66 (221)
323 3e97_A Transcriptional regulat 50.4 12 0.00041 34.2 3.9 27 471-501 175-201 (231)
324 1t6s_A Conserved hypothetical 50.3 11 0.00038 34.3 3.5 44 360-403 3-48 (162)
325 1ntc_A Protein (nitrogen regul 49.7 9.9 0.00034 30.8 2.8 38 454-494 50-87 (91)
326 1r8d_A Transcription activator 49.5 7.3 0.00025 32.6 2.0 25 472-496 3-27 (109)
327 2pg4_A Uncharacterized protein 49.3 12 0.00042 29.8 3.3 26 470-495 29-55 (95)
328 1yz8_P Pituitary homeobox 2; D 49.1 45 0.0015 25.1 6.4 52 451-502 9-61 (68)
329 3rqi_A Response regulator prot 49.1 13 0.00044 32.9 3.8 38 452-492 140-177 (184)
330 2obp_A Putative DNA-binding pr 49.0 25 0.00085 29.2 5.2 45 450-494 12-59 (96)
331 3rkx_A Biotin-[acetyl-COA-carb 49.0 12 0.00041 37.6 3.9 40 454-494 3-42 (323)
332 4ich_A Transcriptional regulat 49.0 9.5 0.00033 37.0 3.1 23 469-491 138-160 (311)
333 3a03_A T-cell leukemia homeobo 48.9 31 0.0011 25.1 5.2 51 451-501 3-54 (56)
334 2fmy_A COOA, carbon monoxide o 48.8 12 0.00043 33.8 3.7 28 470-501 166-193 (220)
335 2fsw_A PG_0823 protein; alpha- 48.7 11 0.00037 31.1 3.0 44 447-494 17-62 (107)
336 3d0s_A Transcriptional regulat 48.4 13 0.00045 33.8 3.8 49 449-501 144-203 (227)
337 1le8_B Mating-type protein alp 48.0 35 0.0012 27.0 5.8 57 452-508 9-69 (83)
338 3f2g_A Alkylmercury lyase; MER 47.9 20 0.00069 34.3 5.0 29 376-404 33-61 (220)
339 3fx3_A Cyclic nucleotide-bindi 47.4 12 0.00039 34.5 3.3 28 471-502 178-205 (237)
340 2heo_A Z-DNA binding protein 1 47.4 22 0.00076 27.0 4.4 28 375-402 21-48 (67)
341 3oio_A Transcriptional regulat 47.4 19 0.00065 29.7 4.3 27 469-495 21-47 (113)
342 3dkw_A DNR protein; CRP-FNR, H 47.3 12 0.00039 34.1 3.2 28 470-501 177-204 (227)
343 1hkq_A REPA, replication prote 47.0 42 0.0014 28.9 6.7 58 445-502 12-78 (132)
344 2k9s_A Arabinose operon regula 46.8 25 0.00087 28.5 5.0 26 470-495 19-44 (107)
345 1d5y_A ROB transcription facto 46.7 55 0.0019 31.1 8.1 39 364-402 4-42 (292)
346 2jml_A DNA binding domain/tran 46.7 12 0.0004 29.5 2.7 24 471-494 5-28 (81)
347 3e6c_C CPRK, cyclic nucleotide 46.6 15 0.0005 34.3 3.9 48 450-501 145-203 (250)
348 3dn7_A Cyclic nucleotide bindi 46.4 9.2 0.00031 33.9 2.3 25 470-494 167-191 (194)
349 3lfp_A CSP231I C protein; tran 46.3 20 0.0007 28.6 4.3 71 380-460 15-89 (98)
350 1stz_A Heat-inducible transcri 46.3 23 0.0008 35.7 5.5 41 452-493 15-60 (338)
351 3rkq_A Homeobox protein NKX-2. 46.2 46 0.0016 23.9 5.8 48 452-499 9-57 (58)
352 2di3_A Bacterial regulatory pr 46.2 18 0.0006 34.1 4.4 38 458-501 16-54 (239)
353 1umq_A Photosynthetic apparatu 45.9 14 0.00049 29.6 3.1 23 471-493 54-76 (81)
354 1puf_B PRE-B-cell leukemia tra 45.5 39 0.0013 25.9 5.6 54 451-504 7-64 (73)
355 2da2_A Alpha-fetoprotein enhan 45.4 35 0.0012 25.8 5.3 53 452-504 14-67 (70)
356 3kcc_A Catabolite gene activat 45.4 49 0.0017 31.0 7.5 27 471-501 217-243 (260)
357 3plo_X DNA-invertase; resolvas 45.4 4.4 0.00015 37.3 0.0 30 470-499 157-186 (193)
358 1akh_A Protein (mating-type pr 45.3 28 0.00097 25.5 4.6 48 451-498 11-59 (61)
359 2ovg_A Phage lambda CRO; trans 45.3 17 0.00058 27.9 3.3 21 473-493 15-35 (66)
360 3la7_A Global nitrogen regulat 45.2 16 0.00054 34.0 3.9 27 471-501 193-219 (243)
361 2hwv_A DNA-binding response re 45.1 47 0.0016 28.1 6.5 51 451-502 43-98 (121)
362 2hs5_A Putative transcriptiona 45.0 15 0.0005 34.9 3.6 38 458-501 40-77 (239)
363 1p4x_A Staphylococcal accessor 44.7 46 0.0016 31.9 7.2 44 451-495 155-198 (250)
364 1ig7_A Homeotic protein MSX-1; 44.6 39 0.0013 24.5 5.2 49 452-500 7-56 (58)
365 2k9m_A RNA polymerase sigma fa 44.4 53 0.0018 28.5 6.9 48 450-501 15-65 (130)
366 1jgg_A Segmentation protein EV 44.2 39 0.0013 24.8 5.2 50 452-501 8-58 (60)
367 2qlz_A Transcription factor PF 44.1 24 0.00082 33.8 5.0 25 469-493 176-200 (232)
368 3f8m_A GNTR-family protein tra 43.9 26 0.00089 33.5 5.3 29 469-501 33-62 (248)
369 3egq_A TETR family transcripti 43.9 22 0.00074 30.4 4.3 24 468-491 21-44 (170)
370 2dn0_A Zinc fingers and homeob 43.4 34 0.0012 26.5 4.9 53 452-504 15-68 (76)
371 3ihu_A Transcriptional regulat 43.4 16 0.00056 33.9 3.6 38 458-501 28-65 (222)
372 1zyb_A Transcription regulator 43.1 17 0.00057 33.5 3.7 46 452-501 162-212 (232)
373 1ic8_A Hepatocyte nuclear fact 43.0 33 0.0011 32.1 5.6 25 469-493 41-65 (194)
374 3t8r_A Staphylococcus aureus C 42.9 24 0.00081 30.9 4.4 26 469-494 26-51 (143)
375 1b72_B Protein (PBX1); homeodo 42.6 48 0.0016 26.2 5.9 54 451-504 7-64 (87)
376 2oa4_A SIR5; structure, struct 42.5 16 0.00053 30.8 2.9 35 458-496 41-75 (101)
377 3pvv_A Chromosomal replication 42.0 49 0.0017 27.5 6.0 32 470-501 49-80 (101)
378 3edp_A LIN2111 protein; APC883 41.9 22 0.00075 33.7 4.3 28 470-501 31-59 (236)
379 1yyv_A Putative transcriptiona 41.6 19 0.00064 31.1 3.5 25 470-494 47-72 (131)
380 2dmt_A Homeobox protein BARH-l 41.5 45 0.0015 26.0 5.5 52 452-503 24-76 (80)
381 3bwg_A Uncharacterized HTH-typ 41.4 23 0.00077 33.6 4.3 29 469-501 26-55 (239)
382 2dmu_A Homeobox protein goosec 41.3 44 0.0015 25.3 5.2 51 452-502 14-65 (70)
383 3lwf_A LIN1550 protein, putati 41.2 31 0.0011 31.0 5.0 44 451-494 21-67 (159)
384 2e1o_A Homeobox protein PRH; D 41.0 44 0.0015 25.3 5.2 50 452-501 14-64 (70)
385 2wv0_A YVOA, HTH-type transcri 41.0 23 0.0008 33.6 4.4 29 469-501 31-60 (243)
386 4bbr_M Transcription initiatio 40.9 28 0.00095 35.3 5.1 34 470-503 291-324 (345)
387 3mkl_A HTH-type transcriptiona 40.6 29 0.00099 28.9 4.5 25 469-493 21-45 (120)
388 1ahd_P Antennapedia protein mu 40.5 61 0.0021 24.4 5.9 51 452-502 9-60 (68)
389 1iuf_A Centromere ABP1 protein 40.4 13 0.00044 32.7 2.2 47 451-499 11-64 (144)
390 1hsj_A Fusion protein consisti 40.1 27 0.00092 36.1 5.0 54 440-494 388-443 (487)
391 2dmq_A LIM/homeobox protein LH 40.0 45 0.0015 25.9 5.2 50 452-501 14-64 (80)
392 4dyq_A Gene 1 protein; GP1, oc 39.9 19 0.00066 31.4 3.3 38 453-494 14-52 (140)
393 2ly9_A Zinc fingers and homeob 39.8 42 0.0014 25.7 5.0 54 452-505 13-67 (74)
394 1jhf_A LEXA repressor; LEXA SO 39.8 45 0.0015 30.3 6.0 38 364-401 10-48 (202)
395 3bqz_B HTH-type transcriptiona 39.8 21 0.00073 30.8 3.7 23 469-491 20-42 (194)
396 2zcm_A Biofilm operon icaabcd 39.5 22 0.00074 31.1 3.7 27 462-491 21-47 (192)
397 2djn_A Homeobox protein DLX-5; 39.4 41 0.0014 25.5 4.8 52 452-503 14-66 (70)
398 2cue_A Paired box protein PAX6 39.4 59 0.002 25.3 5.8 52 452-503 14-66 (80)
399 1ylf_A RRF2 family protein; st 39.4 28 0.00094 30.5 4.3 25 469-493 28-52 (149)
400 2h1k_A IPF-1, pancreatic and d 39.3 52 0.0018 24.4 5.2 50 452-501 10-60 (63)
401 2g7u_A Transcriptional regulat 39.2 37 0.0013 32.4 5.5 26 469-494 27-52 (257)
402 2z99_A Putative uncharacterize 39.1 43 0.0015 31.9 5.8 106 365-485 16-128 (219)
403 1zq3_P PRD-4, homeotic bicoid 39.0 65 0.0022 24.2 5.9 51 452-502 9-60 (68)
404 3rjp_A COVR; winged helix-turn 38.9 61 0.0021 25.7 6.0 51 451-502 22-77 (96)
405 3vpr_A Transcriptional regulat 38.8 23 0.00078 30.9 3.7 28 462-492 17-44 (190)
406 3qkx_A Uncharacterized HTH-typ 38.8 24 0.00084 30.2 3.8 23 469-491 26-48 (188)
407 2cra_A Homeobox protein HOX-B1 38.8 42 0.0014 25.5 4.7 52 452-503 14-66 (70)
408 3nau_A Zinc fingers and homeob 38.6 50 0.0017 25.6 5.0 49 453-501 12-61 (66)
409 1bw5_A ISL-1HD, insulin gene e 38.5 41 0.0014 25.1 4.6 51 452-502 10-61 (66)
410 3df8_A Possible HXLR family tr 38.5 31 0.0011 28.7 4.3 25 470-494 39-66 (111)
411 2k4b_A Transcriptional regulat 38.4 9.7 0.00033 31.6 1.0 46 447-495 28-77 (99)
412 2eh3_A Transcriptional regulat 38.1 24 0.00082 30.5 3.7 27 462-491 16-42 (179)
413 1x3u_A Transcriptional regulat 37.9 64 0.0022 24.3 5.8 28 376-403 28-55 (79)
414 2fq4_A Transcriptional regulat 37.8 24 0.00082 31.0 3.7 28 462-492 26-53 (192)
415 2da3_A Alpha-fetoprotein enhan 37.8 32 0.0011 26.7 4.0 52 452-503 24-76 (80)
416 3eet_A Putative GNTR-family tr 37.8 27 0.00093 33.9 4.3 28 470-501 51-79 (272)
417 2k27_A Paired box protein PAX- 37.6 54 0.0018 28.5 6.0 25 380-404 42-66 (159)
418 2m0c_A Homeobox protein arista 37.6 58 0.002 24.8 5.5 53 452-504 16-69 (75)
419 2fjr_A Repressor protein CI; g 37.6 21 0.00072 32.0 3.3 22 473-494 22-43 (189)
420 1eto_A FIS, factor for inversi 37.6 27 0.00093 28.9 3.7 36 455-493 58-93 (98)
421 2xrn_A HTH-type transcriptiona 37.1 26 0.00088 33.2 4.0 25 470-494 20-44 (241)
422 1du6_A PBX1, homeobox protein 37.1 25 0.00084 26.2 3.1 50 452-501 10-63 (64)
423 2o0y_A Transcriptional regulat 37.0 36 0.0012 32.6 5.0 26 469-494 36-61 (260)
424 1bl0_A Protein (multiple antib 36.7 30 0.001 29.2 4.0 27 469-495 25-51 (129)
425 1b8i_A Ultrabithorax, protein 36.5 61 0.0021 25.4 5.5 53 451-503 26-79 (81)
426 1mkm_A ICLR transcriptional re 36.5 29 0.00098 33.0 4.2 25 470-494 22-46 (249)
427 2k4j_A Putative transcriptiona 36.4 47 0.0016 27.8 5.1 50 451-501 41-95 (115)
428 2pjp_A Selenocysteine-specific 36.4 61 0.0021 27.3 5.9 27 470-496 19-45 (121)
429 4a5n_A Uncharacterized HTH-typ 36.4 28 0.00096 30.3 3.8 46 445-493 16-62 (131)
430 2bgc_A PRFA; bacterial infecti 36.1 21 0.0007 33.0 3.1 27 471-501 169-196 (238)
431 3gpv_A Transcriptional regulat 36.0 15 0.00051 32.5 2.0 27 471-497 16-42 (148)
432 3knw_A Putative transcriptiona 35.9 27 0.00092 30.7 3.7 24 468-491 31-54 (212)
433 1b0n_A Protein (SINR protein); 35.9 22 0.00074 28.8 2.8 80 380-463 15-101 (111)
434 1uhs_A HOP, homeodomain only p 35.7 73 0.0025 24.2 5.7 50 452-501 8-59 (72)
435 3fm5_A Transcriptional regulat 35.7 1.9E+02 0.0066 24.1 9.2 24 379-402 54-77 (150)
436 3lwj_A Putative TETR-family tr 35.5 27 0.00093 30.5 3.7 27 462-491 26-52 (202)
437 2zhg_A Redox-sensitive transcr 35.5 16 0.00054 32.7 2.0 27 470-496 10-36 (154)
438 2l9r_A Homeobox protein NKX-3. 35.3 48 0.0016 25.6 4.5 53 452-504 11-64 (69)
439 1ftt_A TTF-1 HD, thyroid trans 35.2 62 0.0021 24.4 5.2 52 452-503 9-61 (68)
440 3t72_q RNA polymerase sigma fa 35.1 93 0.0032 25.6 6.6 26 378-403 38-63 (99)
441 1hqc_A RUVB; extended AAA-ATPa 35.0 42 0.0014 32.3 5.2 45 451-495 244-288 (324)
442 1fjl_A Paired protein; DNA-bin 34.9 60 0.0021 25.3 5.2 51 452-502 25-76 (81)
443 2wui_A MEXZ, transcriptional r 34.9 29 0.00099 30.9 3.8 24 469-492 29-52 (210)
444 2r5y_A Homeotic protein sex co 34.5 80 0.0027 25.0 6.0 52 451-502 34-86 (88)
445 2pmu_A Response regulator PHOP 34.5 52 0.0018 27.0 5.0 50 451-501 34-88 (110)
446 3kkc_A TETR family transcripti 34.2 27 0.00092 29.8 3.3 23 468-490 29-51 (177)
447 3k69_A Putative transcription 34.2 22 0.00074 32.0 2.7 25 469-493 26-50 (162)
448 2ia2_A Putative transcriptiona 34.1 38 0.0013 32.5 4.7 26 469-494 34-59 (265)
449 2dmp_A Zinc fingers and homeob 34.1 64 0.0022 25.9 5.4 52 452-503 20-72 (89)
450 2yu3_A DNA-directed RNA polyme 34.1 32 0.0011 28.5 3.6 42 450-492 33-74 (95)
451 3vp5_A Transcriptional regulat 34.0 31 0.0011 30.3 3.8 23 469-491 30-52 (189)
452 1tc3_C Protein (TC3 transposas 33.9 64 0.0022 21.2 4.7 24 380-403 22-45 (51)
453 3dpj_A Transcription regulator 33.9 30 0.001 30.0 3.7 24 469-492 26-49 (194)
454 2dmn_A Homeobox protein TGIF2L 33.7 74 0.0025 25.1 5.6 51 452-502 14-68 (83)
455 3lhq_A Acrab operon repressor 33.7 31 0.0011 30.3 3.7 27 462-491 28-54 (220)
456 2hi3_A Homeodomain-only protei 33.6 78 0.0027 24.1 5.6 50 452-501 9-60 (73)
457 1gxq_A PHOB, phosphate regulon 33.5 63 0.0022 26.2 5.4 51 451-502 31-86 (106)
458 1mnm_C Protein (MAT alpha-2 tr 33.4 69 0.0024 25.4 5.4 50 451-500 33-86 (87)
459 2l7z_A Homeobox protein HOX-A1 33.4 55 0.0019 25.1 4.7 52 452-503 14-66 (73)
460 3vib_A MTRR; helix-turn-helix 33.2 30 0.001 30.6 3.6 28 461-491 23-50 (210)
461 3anp_C Transcriptional repress 33.1 31 0.0011 30.4 3.6 27 462-491 23-49 (204)
462 3bru_A Regulatory protein, TET 33.1 33 0.0011 30.4 3.8 23 469-491 48-70 (222)
463 2nx4_A Transcriptional regulat 33.1 31 0.0011 30.3 3.7 23 469-491 28-50 (194)
464 1pb6_A Hypothetical transcript 33.1 31 0.0011 30.3 3.6 27 462-491 32-58 (212)
465 2kt0_A Nanog, homeobox protein 33.1 50 0.0017 25.9 4.5 51 452-502 29-80 (84)
466 3cta_A Riboflavin kinase; stru 32.9 25 0.00084 33.0 3.1 28 467-494 23-50 (230)
467 3bhq_A Transcriptional regulat 32.9 38 0.0013 30.1 4.2 28 462-492 26-53 (211)
468 2g7s_A Transcriptional regulat 32.9 25 0.00085 30.3 2.9 23 469-491 26-48 (194)
469 3iuo_A ATP-dependent DNA helic 32.9 64 0.0022 27.5 5.5 29 469-497 30-58 (122)
470 3dew_A Transcriptional regulat 32.9 25 0.00084 30.6 2.9 28 462-492 22-49 (206)
471 2d6y_A Putative TETR family re 32.7 32 0.0011 30.6 3.7 24 469-492 26-49 (202)
472 2dg7_A Putative transcriptiona 32.7 26 0.00088 30.7 3.0 24 469-492 25-48 (195)
473 1z6r_A MLC protein; transcript 32.6 59 0.002 32.9 6.1 38 457-497 19-56 (406)
474 2ibd_A Possible transcriptiona 32.5 32 0.0011 30.4 3.6 27 462-491 28-54 (204)
475 2rae_A Transcriptional regulat 32.4 31 0.0011 30.2 3.5 27 462-491 31-57 (207)
476 1opc_A OMPR, OMPRC; transcript 32.4 36 0.0012 27.9 3.6 50 451-501 31-85 (110)
477 2p8t_A Hypothetical protein PH 32.3 38 0.0013 31.8 4.2 45 451-501 12-56 (200)
478 2i10_A Putative TETR transcrip 32.2 39 0.0013 30.0 4.2 29 461-492 24-52 (202)
479 3on4_A Transcriptional regulat 32.2 26 0.00088 30.2 2.9 27 462-491 24-50 (191)
480 3f0c_A TETR-molecule A, transc 32.1 33 0.0011 30.3 3.6 27 462-491 25-51 (216)
481 1nk2_P Homeobox protein VND; h 32.1 70 0.0024 24.7 5.2 51 452-502 16-67 (77)
482 2dms_A Homeobox protein OTX2; 32.1 58 0.002 25.3 4.7 51 452-502 14-65 (80)
483 1ku3_A Sigma factor SIGA; heli 31.7 78 0.0027 23.7 5.3 25 378-402 29-53 (73)
484 2yve_A Transcriptional regulat 31.6 37 0.0013 29.6 3.9 24 468-491 21-44 (185)
485 3r4k_A Transcriptional regulat 31.6 33 0.0011 32.9 3.7 26 469-494 19-44 (260)
486 2f07_A YVDT; helix-turn-helix, 31.5 34 0.0012 30.2 3.6 27 462-491 24-50 (197)
487 1qbj_A Protein (double-strande 31.5 88 0.003 24.8 5.7 25 378-402 26-50 (81)
488 3hot_A Transposable element ma 31.5 37 0.0013 33.2 4.2 37 456-496 11-54 (345)
489 2vi6_A Homeobox protein nanog; 31.3 52 0.0018 24.2 4.1 50 451-500 9-59 (62)
490 2o7t_A Transcriptional regulat 31.2 28 0.00097 30.6 3.0 23 469-491 26-48 (199)
491 3b81_A Transcriptional regulat 31.1 25 0.00087 30.6 2.7 26 462-490 25-50 (203)
492 3gzi_A Transcriptional regulat 31.1 31 0.001 30.5 3.2 28 462-492 31-58 (218)
493 3cwr_A Transcriptional regulat 31.1 27 0.00093 30.4 2.9 27 462-491 31-57 (208)
494 2gen_A Probable transcriptiona 31.0 36 0.0012 30.0 3.7 27 462-491 21-47 (197)
495 3ivp_A Putative transposon-rel 30.8 1.7E+02 0.006 24.0 7.9 76 379-464 25-106 (126)
496 1o5l_A Transcriptional regulat 30.6 24 0.00084 31.8 2.5 27 471-501 164-190 (213)
497 4fe7_A Xylose operon regulator 30.6 3.1E+02 0.011 27.2 11.1 40 363-402 305-344 (412)
498 4g6q_A Putative uncharacterize 30.3 50 0.0017 30.0 4.6 42 448-493 16-59 (182)
499 1ui5_A A-factor receptor homol 30.1 37 0.0013 30.5 3.7 27 462-491 23-49 (215)
500 3bni_A Putative TETR-family tr 29.8 38 0.0013 30.7 3.7 27 462-491 57-83 (229)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=2.6e-53 Score=450.83 Aligned_cols=313 Identities=29% Similarity=0.411 Sum_probs=274.4
Q ss_pred cCCCChHHHHHHhcCCCCCCChHHHHHHHHHHhHhHHHHHHHH------------------HHHHHhCCCCCHHHHHH--
Q 010338 197 SYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKE------------------QLQKDLGREPTDVELAE-- 256 (513)
Q Consensus 197 ~~~~d~~~~yl~~i~~~plLt~eEE~~L~~~iq~~~~l~~~~~------------------~l~~~l~r~p~~~e~A~-- 256 (513)
..+.|.+++||++|+++|+||++||+.|++.|+.+..+..... .....+++.|+..+|+.
T Consensus 90 ~~~~d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (438)
T 1l9z_H 90 VSTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPK 169 (438)
T ss_pred CCCCChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccch
Confidence 4677999999999999999999999999999998754432211 11223566787777642
Q ss_pred ----------HccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHchhccCCCCcHHHHHHHHHHHHHHHHhhcCCcC
Q 010338 257 ----------ATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKR 326 (513)
Q Consensus 257 ----------~~~~s~e~L~~~~~gd~~Ar~~LI~~nlrLV~sIAkky~~~~~~g~~~eDLIQEG~iGLirAvekFDp~k 326 (513)
..+++...|.....+|..|+++||.+|+++|+++|++|. +++.+++|||||||||||+|+++|||++
T Consensus 170 ~~~~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~---~~g~~aeDLIQEg~IgL~kAvekFDp~k 246 (438)
T 1l9z_H 170 TVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYT---GRGLSFLDLIQEGNQGLIRAVEKFEYKR 246 (438)
T ss_pred hhhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHhcCccc
Confidence 124555677777888999999999999999999999999 7899999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHH-hccccccccchhHHHHHHHHHHHHHHHHhCCCCCHHHHHHhcC--CCHHHHHHHHHhc
Q 010338 327 RFRLSTYGLFWIRHAIIRSMT-VSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVN--ISPERYREVMKAS 403 (513)
Q Consensus 327 G~rFSTYA~~wIR~aI~raI~-~~r~iRlP~~~~~~~~ki~ka~~~L~~elgR~PT~eELA~~lg--is~e~v~~~l~~~ 403 (513)
|++|+|||+||||++|.++|+ +.+.+++|.|+...+++++++.+.+.+.+||.|+.+|||+.+| +++++|..+++..
T Consensus 247 G~rFsTYA~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~ 326 (438)
T 1l9z_H 247 RFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIA 326 (438)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhc
Confidence 999999999999999999999 8899999999999999999999999999999999999999999 9999999999999
Q ss_pred cCcccccCCCCCchh-hhhccccCCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC
Q 010338 404 KPILSLHSRHGVTQE-EFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN 482 (513)
Q Consensus 404 ~~~~SLd~~~~~~~~-e~~d~l~d~~~~~~ee~~~~~~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~Lg 482 (513)
...+|||.+.+++++ .+.+.+.+....+|++.....++...|..+|+.||++|+.||.+||||+|++++|++|||+.||
T Consensus 327 ~~~~SLd~~~~~d~d~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~ereR~VI~LRygL~~~e~~TleEIAe~Lg 406 (438)
T 1l9z_H 327 QEPVSLETPIGDEKDSFYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFG 406 (438)
T ss_pred ccccccccccccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHC
Confidence 999999988755433 3444455544455777777778889999999999999999999999999989999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-Ccchhhhhhhcc
Q 010338 483 ISREMVRKHEVKGLMKLK-HPTRVDYLRQHM 512 (513)
Q Consensus 483 ISrerVRqi~~rALkKLR-~~~~~~~L~~yl 512 (513)
||+++|||++.+|++||| ++.+...|+.|+
T Consensus 407 IS~erVRqi~~RAlkKLR~~~~~~~~l~~yl 437 (438)
T 1l9z_H 407 VTRERIRQIENKALRKLKYHESRTRKLRDFL 437 (438)
T ss_pred cCHHHHHHHHHHHHHHHHHhHhhHHHHHHhh
Confidence 999999999999999999 888889999986
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=3.4e-53 Score=449.82 Aligned_cols=313 Identities=30% Similarity=0.415 Sum_probs=265.5
Q ss_pred cCCCChHHHHHHhcCCCCCCChHHHHHHHHHHhHhHHHHHHHHH------------------HHHHhCCCCCHHH-----
Q 010338 197 SYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKEQ------------------LQKDLGREPTDVE----- 253 (513)
Q Consensus 197 ~~~~d~~~~yl~~i~~~plLt~eEE~~L~~~iq~~~~l~~~~~~------------------l~~~l~r~p~~~e----- 253 (513)
...+|.+++||++|+.+|+||++||.+|++.++.+..+...... ....+++.|+..+
T Consensus 75 ~~~~d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (423)
T 2a6h_F 75 ISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPK 154 (423)
T ss_dssp CTTHHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTH
T ss_pred cCCCcHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHHHHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhh
Confidence 45679999999999999999999999999999986433322111 0112334555333
Q ss_pred ----HHH---HccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHchhccCCCCcHHHHHHHHHHHHHHHHhhcCCcC
Q 010338 254 ----LAE---ATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKR 326 (513)
Q Consensus 254 ----~A~---~~~~s~e~L~~~~~gd~~Ar~~LI~~nlrLV~sIAkky~~~~~~g~~~eDLIQEG~iGLirAvekFDp~k 326 (513)
|+. +++++...|.....+|..|+++||.+|+++|+++|++|. ++|.+++|||||||+|||+|+++|||++
T Consensus 155 ~~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~---~~~~~~eDLiQEg~igL~kav~kFd~~~ 231 (423)
T 2a6h_F 155 TVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYT---GRGLSFLDLIQEGNQGLIRAVEKFEYKR 231 (423)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTC---TTTSCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred hhhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHhcCccc
Confidence 222 234555666667778899999999999999999999998 7899999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHH-hccccccccchhHHHHHHHHHHHHHHHHhCCCCCHHHHHHhcC--CCHHHHHHHHHhc
Q 010338 327 RFRLSTYGLFWIRHAIIRSMT-VSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVN--ISPERYREVMKAS 403 (513)
Q Consensus 327 G~rFSTYA~~wIR~aI~raI~-~~r~iRlP~~~~~~~~ki~ka~~~L~~elgR~PT~eELA~~lg--is~e~v~~~l~~~ 403 (513)
|++|+|||+||||++|.++|. +.+.+++|.|+.+.+++++++.+.+.+.+||.|+.+|||+.+| +++++|..+++..
T Consensus 232 g~~FstYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~ 311 (423)
T 2a6h_F 232 RFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIA 311 (423)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhc
Confidence 999999999999999999999 8999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCcccccCCCCCchh-hhhccccCCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC
Q 010338 404 KPILSLHSRHGVTQE-EFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN 482 (513)
Q Consensus 404 ~~~~SLd~~~~~~~~-e~~d~l~d~~~~~~ee~~~~~~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~Lg 482 (513)
...+|||.+.+++++ .+.+.+.+....+|++.....++...|..+|+.||++|+.||.+||||+|++++|++|||+.||
T Consensus 312 ~~~~Sld~~~~~~~~~~l~d~l~d~~~~~pe~~~~~~~~~~~L~~aL~~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lg 391 (423)
T 2a6h_F 312 QEPVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFG 391 (423)
T ss_dssp SCCEESSCBCSSSSSCBGGGSSCCSSSCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCC-----CHHHHSSS
T ss_pred cCCcccccccCCCCccchhhhhccccCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCCCCCCCHHHHHHHHC
Confidence 999999988755433 3455555544456777777788889999999999999999999999999989999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-Ccchhhhhhhcc
Q 010338 483 ISREMVRKHEVKGLMKLK-HPTRVDYLRQHM 512 (513)
Q Consensus 483 ISrerVRqi~~rALkKLR-~~~~~~~L~~yl 512 (513)
||+++|||++.+|++||| ++.+...|+.|+
T Consensus 392 iS~erVrqi~~rAl~kLR~~~~~~~~l~~~l 422 (423)
T 2a6h_F 392 VTRERIRQIENKALRKLKYHESRTRKLRDFL 422 (423)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTSSSSCC
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Confidence 999999999999999999 888888899886
No 3
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=2.6e-41 Score=373.80 Aligned_cols=246 Identities=33% Similarity=0.539 Sum_probs=226.7
Q ss_pred HHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHchhccCCCCcHHHHHHHHHHHHHHHHhhcCCcCCCccchHHHHHHHH
Q 010338 264 QVKKCLEVGRAA---RNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRH 340 (513)
Q Consensus 264 ~L~~~~~gd~~A---r~~LI~~nlrLV~sIAkky~~~~~~g~~~eDLIQEG~iGLirAvekFDp~kG~rFSTYA~~wIR~ 340 (513)
.+.++..|+..| ++.||.+|+++|+++|++|. +++.+++||+||||+|||+++++||+.+|++|+||++||||+
T Consensus 361 Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~---~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn 437 (613)
T 3iyd_F 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT---NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437 (613)
T ss_dssp HHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSS---TTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHH
Confidence 466678899887 99999999999999999998 789999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hccccccccchhHHHHHHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHhccCcccccCCCCCchh-
Q 010338 341 AIIRSMT-VSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQE- 418 (513)
Q Consensus 341 aI~raI~-~~r~iRlP~~~~~~~~ki~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLd~~~~~~~~- 418 (513)
+|.++++ +.+++|+|.|+.+.+++++++...+.+++||.||++|||+.+|+++++++.++.....++||+.+.+.+.+
T Consensus 438 ~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~~ 517 (613)
T 3iyd_F 438 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS 517 (613)
T ss_dssp HHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSSC
T ss_pred HHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCCc
Confidence 9999999 88999999999999999999999999999999999999999999999999999999999999998765444
Q ss_pred hhhccccCCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010338 419 EFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMK 498 (513)
Q Consensus 419 e~~d~l~d~~~~~~ee~~~~~~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkK 498 (513)
.+.+.+.+....+|++.....++...|..+|+.||++++.||.|+||+++.+++|++|||+.||||+++|++++++|+++
T Consensus 518 ~l~d~i~d~~~~~p~~~~~~~e~~~~l~~aL~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~k 597 (613)
T 3iyd_F 518 HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 597 (613)
T ss_dssp CGGGSCCCSSSCCHHHHHHHHTTSSSHHHHTTSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTT
T ss_pred cHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 34455555555567777777777888999999999999999999999988799999999999999999999999999999
Q ss_pred HhCcchhhhhhhcc
Q 010338 499 LKHPTRVDYLRQHM 512 (513)
Q Consensus 499 LR~~~~~~~L~~yl 512 (513)
||++.+...|+.|+
T Consensus 598 LR~~~~~~~l~~~l 611 (613)
T 3iyd_F 598 LRHPSRSEVLRSFL 611 (613)
T ss_dssp TTSCSSSCSSTTCC
T ss_pred hhCcchhhHHHHHh
Confidence 99999999999886
No 4
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=2e-36 Score=299.58 Aligned_cols=210 Identities=31% Similarity=0.464 Sum_probs=129.6
Q ss_pred cCCCChHHHHHHhcCCCCCCChHHHHHHHHHHhHhHHHH-HHHHHH--HHH-----------------------hCCCCC
Q 010338 197 SYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFV-QVKEQL--QKD-----------------------LGREPT 250 (513)
Q Consensus 197 ~~~~d~~~~yl~~i~~~plLt~eEE~~L~~~iq~~~~l~-~~~~~l--~~~-----------------------l~r~p~ 250 (513)
..++|++++||++|+++|+||++||++|++.|+.+.... .+.... +.. ...+|+
T Consensus 3 ~~~~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~ 82 (245)
T 3ugo_A 3 HMTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPK 82 (245)
T ss_dssp --CCHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHH
T ss_pred CCCCCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccch
Confidence 357899999999999999999999999999999876533 222110 000 136788
Q ss_pred HHHHHHHccCCH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHchhccCCCCcHHHHHHHHHHHHHHHHhhcCCcC
Q 010338 251 DVELAEATNMSA----AQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKR 326 (513)
Q Consensus 251 ~~e~A~~~~~s~----e~L~~~~~gd~~Ar~~LI~~nlrLV~sIAkky~~~~~~g~~~eDLIQEG~iGLirAvekFDp~k 326 (513)
..+||.+.+++. ..|.+...||..|++.||..|+++|+++|++|. +++.+++||+||||+|||+|+++|||++
T Consensus 83 ~~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~---~~~~~aeDLvQegfi~L~~a~~~fd~~~ 159 (245)
T 3ugo_A 83 TVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYT---GRGLSFLDLIQEGNQGLIRAVEKFEYKR 159 (245)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGT---TSSSCHHHHHHHHHHHHHHHHHHCCGGG
T ss_pred hHHHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHHHHHHHcCccc
Confidence 899999988753 456677889999999999999999999999998 7889999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHH-hccccccccchhHHHHHHHHHHHHHHHHhCCCCCHHHHHHhcC--CCHHHHHHHHHhc
Q 010338 327 RFRLSTYGLFWIRHAIIRSMT-VSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVN--ISPERYREVMKAS 403 (513)
Q Consensus 327 G~rFSTYA~~wIR~aI~raI~-~~r~iRlP~~~~~~~~ki~ka~~~L~~elgR~PT~eELA~~lg--is~e~v~~~l~~~ 403 (513)
|++|+||++||||++|+++++ +.+.+++|.++.+.++++..+.+.|...+|+.||.+|||+.|| ||+++|...+..+
T Consensus 160 g~~F~tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~a 239 (245)
T 3ugo_A 160 RFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIA 239 (245)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTC-------------------------------------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 999999999999999999999 8889999999999999999999999999999999999999999 9999999999988
Q ss_pred cCcccc
Q 010338 404 KPILSL 409 (513)
Q Consensus 404 ~~~~SL 409 (513)
+..+||
T Consensus 240 r~~lsl 245 (245)
T 3ugo_A 240 QEPVSL 245 (245)
T ss_dssp ------
T ss_pred hhccCC
Confidence 877775
No 5
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.97 E-value=6.1e-31 Score=253.06 Aligned_cols=224 Identities=23% Similarity=0.249 Sum_probs=188.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHchhccCCCCcHHHHHHHHHHHHHHHHhhcCCcCCCccchHHHHHHHHHHHHHHHhccc
Q 010338 272 GRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSF 351 (513)
Q Consensus 272 d~~Ar~~LI~~nlrLV~sIAkky~~~~~~g~~~eDLIQEG~iGLirAvekFDp~kG~rFSTYA~~wIR~aI~raI~~~r~ 351 (513)
+..|++.|+..|.++|+.+|++|..+++++.+++||+|||+++||+++++||+.+|.+|+||+++||++.+.++++...
T Consensus 10 ~~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~- 88 (239)
T 1rp3_A 10 NQIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS-
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-
Confidence 3458999999999999999999974334678999999999999999999999999999999999999999999999332
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHhcc--CcccccCCCCCchhhhhccccCCCC
Q 010338 352 TRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASK--PILSLHSRHGVTQEEFINGITDVDG 429 (513)
Q Consensus 352 iRlP~~~~~~~~ki~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~~~--~~~SLd~~~~~~~~e~~d~l~d~~~ 429 (513)
+.|.+.....+++.++...+...+|+.|+.+++|+.+|++++++..++.... ...|++.+...+++...+. .+. .
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~-~~~-~ 165 (239)
T 1rp3_A 89 -FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDYSEL-IPS-S 165 (239)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-GGG-S
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCcccccc-cCC-C
Confidence 5788888899999999999999999999999999999999999998876543 3456665432222211222 222 3
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010338 430 VENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 503 (513)
Q Consensus 430 ~~~ee~~~~~~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~ 503 (513)
.+|++.....+....|..+|+.||++++.||.++| .+++|++|||+.||||.++|++++.+|+++||+..
T Consensus 166 ~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 166 TNVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIF----YEELPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH----TSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 34566667777888999999999999999999999 68999999999999999999999999999999654
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.96 E-value=3.5e-31 Score=254.58 Aligned_cols=222 Identities=27% Similarity=0.398 Sum_probs=53.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHchhccCCCCcHHHHHHHHHHHHHHHHhhcCCcCCCccchHHHHHHHHHHHH
Q 010338 265 VKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIR 344 (513)
Q Consensus 265 L~~~~~gd~~Ar~~LI~~nlrLV~sIAkky~~~~~~g~~~eDLIQEG~iGLirAvekFDp~kG~rFSTYA~~wIR~aI~r 344 (513)
+..+..||..|++.|+..|.++|+++|++|. ++..+++||+||||++||+++++||+.+|..|+||+++|+++.+.+
T Consensus 19 ~~~~~~gd~~a~~~l~~~~~~~v~~~~~~~~---~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~d 95 (243)
T 1l0o_C 19 IRRSQEGDQEARDEIIEKNMRLVWSVVQRFL---NRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQR 95 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHhHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHH
Confidence 3445678999999999999999999999998 6778999999999999999999999999889999999999999999
Q ss_pred HHHhccccccccchhHHHHHHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHhccCcccccCCCCCchhh---hh
Q 010338 345 SMTVSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEE---FI 421 (513)
Q Consensus 345 aI~~~r~iRlP~~~~~~~~ki~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLd~~~~~~~~e---~~ 421 (513)
++++...+++|.++.....+++++...+....|+.|+.++++..+|++.+.+...+.......|++.+..+++++ +.
T Consensus 96 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 175 (243)
T 1l0o_C 96 FLRDDGTVKVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDGDPITLL 175 (243)
T ss_dssp ----CCCCTTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC-------------------
T ss_pred HHHhcCCccCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccccCCcccchh
Confidence 999555889999999999999999999999999999999999999999999998888777777887764322211 11
Q ss_pred ccccCCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 010338 422 NGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500 (513)
Q Consensus 422 d~l~d~~~~~~ee~~~~~~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR 500 (513)
+. .+++.....+....|..+|+.||++++.||.++| ++++|++|||+.||||.++|++++.+|+++||
T Consensus 176 ~~-------~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 176 DQ-------IADADEASWFDKIALKKAIEELDERERLIVYLRY----YKDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred hc-------cCcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH----hcCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 11 1222333445667889999999999999999999 68999999999999999999999999999997
No 7
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.86 E-value=3.6e-21 Score=179.83 Aligned_cols=176 Identities=15% Similarity=0.129 Sum_probs=134.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHchhccCCCCcHHHHHHHHHHHHHHHHhhcCCcCCCccchHHHHHHHHHH
Q 010338 263 AQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAI 342 (513)
Q Consensus 263 e~L~~~~~gd~~Ar~~LI~~nlrLV~sIAkky~~~~~~g~~~eDLIQEG~iGLirAvekFDp~kG~rFSTYA~~wIR~aI 342 (513)
+.+..+..||..|++.|+..|.+.|+.+|.+|. + ..+.+|++||+|+++|+++++|++.. .|.+|++.++++.+
T Consensus 12 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~---~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~ 85 (194)
T 1or7_A 12 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV---P-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTA 85 (194)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTS---C-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHc---C-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHH
Confidence 345667789999999999999999999999998 7 88999999999999999999999865 59999999999999
Q ss_pred HHHHH-hccccccccchhHHHHHHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHhccCcccccCCCCCchhhhh
Q 010338 343 IRSMT-VSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFI 421 (513)
Q Consensus 343 ~raI~-~~r~iRlP~~~~~~~~ki~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLd~~~~~~~~e~~ 421 (513)
.++++ +.+.... ..+. .. . ...++..
T Consensus 86 ~d~~R~~~~~~~~----------------------------~~~~-----------~~-~----~~~~~~~--------- 112 (194)
T 1or7_A 86 KNYLVAQGRRPPS----------------------------SDVD-----------AI-E----AENFESG--------- 112 (194)
T ss_dssp HHHHHHHTTCCTH----------------------------HHHH-----------HH-H----HHSCCSS---------
T ss_pred HHHHHHHhccCcc----------------------------cccc-----------cc-c----ccccccc---------
Confidence 99998 3221110 0000 00 0 0000000
Q ss_pred ccccCCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 422 NGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 422 d~l~d~~~~~~ee~~~~~~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
..+.+ ..+|++.....+....|..+|+.||++++.||.++| .+++|++|||+.||||..+|++++.+|+++||+
T Consensus 113 ~~~~~--~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 113 GALKE--ISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRE----LDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp CC----------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHH----TTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccccC--CCChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHH----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 00111 122344444556677889999999999999999999 789999999999999999999999999999996
Q ss_pred cc
Q 010338 502 PT 503 (513)
Q Consensus 502 ~~ 503 (513)
..
T Consensus 187 ~l 188 (194)
T 1or7_A 187 KV 188 (194)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.86 E-value=3.7e-22 Score=185.34 Aligned_cols=166 Identities=15% Similarity=0.112 Sum_probs=137.0
Q ss_pred HHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHchhccCCCCcHHHHHHHHHHHHHHHHhhcCCcCCCccchHHHHHHHHH
Q 010338 263 AQVKK-CLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHA 341 (513)
Q Consensus 263 e~L~~-~~~gd~~Ar~~LI~~nlrLV~sIAkky~~~~~~g~~~eDLIQEG~iGLirAvekFDp~kG~rFSTYA~~wIR~a 341 (513)
+.+.. +..|+..|++.|+..|.+.|+.+|.++. ++..+.+|++||+|+.+|+++++|++..| .|.+|++.++++.
T Consensus 15 ~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~---~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n~ 90 (184)
T 2q1z_A 15 ALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSG---SVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARNR 90 (184)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHc---CCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHHH
Confidence 34566 6789999999999999999999999998 67889999999999999999999998876 7999999999998
Q ss_pred HHHHHH-hccccccccchhHHHHHHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHhccCcccccCCCCCchhhh
Q 010338 342 IIRSMT-VSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEF 420 (513)
Q Consensus 342 I~raI~-~~r~iRlP~~~~~~~~ki~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLd~~~~~~~~e~ 420 (513)
+.++++ ..+... ++. ..
T Consensus 91 ~~d~~R~~~~~~~-------------------------------------------------------~~~-------~~ 108 (184)
T 2q1z_A 91 RIDGLRKDRQPEP-------------------------------------------------------EDL-------FW 108 (184)
T ss_dssp CCTTTCSSSCCCC-------------------------------------------------------CCC-------CC
T ss_pred HHHHHHhhccccc-------------------------------------------------------ccc-------cc
Confidence 887776 221100 000 00
Q ss_pred hccccCCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 010338 421 INGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500 (513)
Q Consensus 421 ~d~l~d~~~~~~ee~~~~~~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR 500 (513)
..+...++++.....+....|..+|+.||++++.||.++| .+++|++|||+.||||..+|++++.+|+++||
T Consensus 109 ----~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 109 ----GPDSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAF----FGDLTHRELAAETGLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp ----CSSCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH----HSCCSSCCSTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred ----cCCCCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 0112234556666667778899999999999999999998 68999999999999999999999999999999
Q ss_pred Cc
Q 010338 501 HP 502 (513)
Q Consensus 501 ~~ 502 (513)
+.
T Consensus 181 ~~ 182 (184)
T 2q1z_A 181 QH 182 (184)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 9
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.82 E-value=4.4e-20 Score=166.84 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=102.7
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCcCCCccchHHHHHHHHHHHHHHH-hccccccccchhHHHHHHHHHHHHHHHHhCCC
Q 010338 301 GPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT-VSSFTRVPFGLESVRGEIQRAKLELLFELKRV 379 (513)
Q Consensus 301 g~~~eDLIQEG~iGLirAvekFDp~kG~rFSTYA~~wIR~aI~raI~-~~r~iRlP~~~~~~~~ki~ka~~~L~~elgR~ 379 (513)
|.+++|++||||++||+++++||+.+ .+|.||+++++++.+.++++ +.+..+.+..
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~---------------------- 57 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLN---------------------- 57 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhH----------------------
Confidence 56899999999999999999999987 78999999999999999998 4322222100
Q ss_pred CCHHHHHHhcCCCHHHHHHHHHhccCcccccCCCCCchh-hhhc---cccCCCCCCchhhhHHHHHHHHHHHHHh-cCCH
Q 010338 380 PTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQE-EFIN---GITDVDGVENENQRQPALLRLALDDVLD-SLKP 454 (513)
Q Consensus 380 PT~eELA~~lgis~e~v~~~l~~~~~~~SLd~~~~~~~~-e~~d---~l~d~~~~~~ee~~~~~~l~~~L~~aL~-~L~~ 454 (513)
..++++....++.. .+.+ ........+|++.....+....|..+|. .||+
T Consensus 58 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~l~~~L~~ 112 (164)
T 3mzy_A 58 -------------------------EALKTNAILEDSAYFDDEGHNINNYKSSESNPEEAYLLKEEIEEFKKFSENNFSK 112 (164)
T ss_dssp ---------------------------------------------------------CHHHHHHHHHHHHHHHHHHHSCH
T ss_pred -------------------------HHhhhhhhhccCCCCCcccchhhhhcccCCCHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 00111111000000 0000 0011222345666677778888999999 9999
Q ss_pred HHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010338 455 KESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504 (513)
Q Consensus 455 rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~ 504 (513)
+++.||. +| .+++|++|||+.||||.++|++++.+|+++||+...
T Consensus 113 ~~r~v~~-~~----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 113 FEKEVLT-YL----IRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HHHHHHH-HH----TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HH----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 67 689999999999999999999999999999997654
No 10
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.63 E-value=9.4e-18 Score=153.72 Aligned_cols=140 Identities=10% Similarity=0.040 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHHHchhccCCCCcHHHHHHHHHHHHHHHHhhcCCcCCCccchHHHHHHHHHHHHHHHhccccccc
Q 010338 276 RNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVP 355 (513)
Q Consensus 276 r~~LI~~nlrLV~sIAkky~~~~~~g~~~eDLIQEG~iGLirAvekFDp~kG~rFSTYA~~wIR~aI~raI~~~r~iRlP 355 (513)
++.|+..|.+.|+.+|.++. ++..+.+|++||+|+.+|++.++|++.. .|.+|++..+++.+.++++...
T Consensus 3 f~~l~~~~~~~l~~~~~~~~---~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~----- 72 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALT---GSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGE----- 72 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTT---SCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTS-----
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccC-----
Confidence 56788999999999999998 6788999999999999999999999753 6999999999999888776200
Q ss_pred cchhHHHHHHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHhccCcccccCCCCCchhhhhccccCCCCCCchhh
Q 010338 356 FGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQ 435 (513)
Q Consensus 356 ~~~~~~~~ki~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLd~~~~~~~~e~~d~l~d~~~~~~ee~ 435 (513)
. . +. . .+ . .
T Consensus 73 -------------------------~-----------------------~----~~-------~-----~e-~---~--- 81 (157)
T 2lfw_A 73 -------------------------A-----------------------Q----TS-------Q-----SD-A---E--- 81 (157)
T ss_dssp -------------------------C-----------------------C----CC-------C-----CS-C---S---
T ss_pred -------------------------c-----------------------c----cC-------C-----cc-h---H---
Confidence 0 0 00 0 00 0 0
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010338 436 RQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504 (513)
Q Consensus 436 ~~~~~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~ 504 (513)
+....|..+|+.||+++++||.|+| .+++|++|||+.||||..+|++.+.+|+++||+...
T Consensus 82 ----~~~~~l~~~l~~Lp~~~r~vl~L~~----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 82 ----GTEAVARARLARMTPLSRQALLLTA----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp ----SSSSTTTTTTTTSCTTHHHHHTTTS----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred ----HHHHHHHHHHHhCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 0112466788999999999999999 789999999999999999999999999999998654
No 11
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.62 E-value=1.4e-15 Score=156.49 Aligned_cols=81 Identities=40% Similarity=0.686 Sum_probs=76.8
Q ss_pred HHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHchhccCCCCcHHHHHHHHHHHHHHHHhhcCCcCCCccchHHHHHHHH
Q 010338 264 QVKKCLEVGR---AARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRH 340 (513)
Q Consensus 264 ~L~~~~~gd~---~Ar~~LI~~nlrLV~sIAkky~~~~~~g~~~eDLIQEG~iGLirAvekFDp~kG~rFSTYA~~wIR~ 340 (513)
.+.++..|+. .|++.||..|+++|+++|++|. +++.+++||+||||+|||+++++|++.+|++|+||++|||+|
T Consensus 252 l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~---~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn 328 (339)
T 1sig_A 252 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT---NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 328 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTST---TSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHh---cCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHH
Confidence 4566778998 9999999999999999999999 789999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 010338 341 AIIRSMT 347 (513)
Q Consensus 341 aI~raI~ 347 (513)
+|.++++
T Consensus 329 ~~~~~lr 335 (339)
T 1sig_A 329 AITRSIA 335 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999998
No 12
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.51 E-value=3.3e-14 Score=121.80 Aligned_cols=77 Identities=40% Similarity=0.625 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhhhhcc
Q 010338 436 RQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 512 (513)
Q Consensus 436 ~~~~~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~L~~yl 512 (513)
+...++...|..+|+.|||+|+.||.+|||++|.+++|++|||+.||||.++|++++.+|+++||+......|+.|+
T Consensus 4 ~~~~el~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~ 80 (99)
T 3t72_q 4 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGS 80 (99)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999999999998889999999999999999999999999999999999999999886
No 13
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.49 E-value=1.2e-14 Score=146.09 Aligned_cols=145 Identities=8% Similarity=-0.079 Sum_probs=116.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHchhccCCCCcHHHHHHHHHHHHHHHHhhcCCcCCCccchHHHHHHHHHHHHHHHh
Q 010338 269 LEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTV 348 (513)
Q Consensus 269 ~~gd~~Ar~~LI~~nlrLV~sIAkky~~~~~~g~~~eDLIQEG~iGLirAvekFDp~kG~rFSTYA~~wIR~aI~raI~~ 348 (513)
.+|+..+++.|+..|.+.++.+|.+|. ++..+.+|++||.|+.+|+..++|++. ..|.+|++..++|.+.+.++.
T Consensus 16 ~~g~~~~f~~l~~~~~~~l~~~a~~~~---~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~ 90 (286)
T 3n0r_A 16 PRGSEMHLLARLAPHLPYIRRYARALT---GDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQ 90 (286)
T ss_dssp ----CCCHHHHHGGGHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC-
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHh---CCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhccc
Confidence 467788999999999999999999999 778899999999999999999999974 369999999888877654431
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHhccCcccccCCCCCchhhhhccccCCC
Q 010338 349 SSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVD 428 (513)
Q Consensus 349 ~r~iRlP~~~~~~~~ki~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLd~~~~~~~~e~~d~l~d~~ 428 (513)
.. ... ....
T Consensus 91 ~~------------------------------------------------------------~~~-----------~~~~ 99 (286)
T 3n0r_A 91 LE------------------------------------------------------------VGH-----------DQGL 99 (286)
T ss_dssp ---------------------------------------------------------------CC-----------CCCC
T ss_pred cc------------------------------------------------------------cCC-----------Cccc
Confidence 00 000 0000
Q ss_pred CCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010338 429 GVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504 (513)
Q Consensus 429 ~~~~ee~~~~~~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~ 504 (513)
+ ....|..+|++||+++|.||.|+| .+++|++|||..||+|..+|+....+|+++|+....
T Consensus 100 ----~-------~~~~l~~al~~Lp~~~R~v~~L~~----~eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~ 160 (286)
T 3n0r_A 100 ----H-------AGDDAAQRLMRIAPRSRQAFLLTA----LEGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELA 160 (286)
T ss_dssp ----C-------TTSHHHHHHHHHSCHHHHHHHHHH----TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred ----c-------hHHHHHHHHHhCCHHHeeEEEEEe----eCCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCC
Confidence 0 012478899999999999999999 899999999999999999999999999999997654
No 14
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=99.32 E-value=1.9e-12 Score=102.31 Aligned_cols=65 Identities=42% Similarity=0.711 Sum_probs=61.3
Q ss_pred HHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhhhhcc
Q 010338 448 VLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 512 (513)
Q Consensus 448 aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~L~~yl 512 (513)
+|+.|||+|++||.++|||+|++++|++|||+.||+|.++|++++.+|+++||.......+..|+
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~ 66 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 66 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTT
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999889999999999999999999999999999999999988888875
No 15
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.29 E-value=6.4e-12 Score=104.37 Aligned_cols=70 Identities=41% Similarity=0.735 Sum_probs=64.3
Q ss_pred HHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhhhhcc
Q 010338 443 LALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 512 (513)
Q Consensus 443 ~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~L~~yl 512 (513)
..|..+|+.||++|+.||.++|+|+|.+++|++|||+.||||.++|++++.+|+++||.......+..|+
T Consensus 10 ~~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~ 79 (87)
T 1tty_A 10 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLL 79 (87)
T ss_dssp SHHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3578899999999999999999888779999999999999999999999999999999988887777663
No 16
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=99.29 E-value=1.5e-12 Score=104.44 Aligned_cols=68 Identities=35% Similarity=0.565 Sum_probs=55.6
Q ss_pred HHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHh-Ccchhhhhhhcc
Q 010338 445 LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK-HPTRVDYLRQHM 512 (513)
Q Consensus 445 L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR-~~~~~~~L~~yl 512 (513)
|..+|+.||++|+.||.++|+|+|.+++|++|||+.||+|.++|++++.+|+++|| .....+.|+.|+
T Consensus 4 l~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 72 (73)
T 1ku3_A 4 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFL 72 (73)
T ss_dssp CSSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhh
Confidence 45678899999999999999888779999999999999999999999999999999 998888888875
No 17
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=99.19 E-value=5.6e-11 Score=99.39 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=66.4
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010338 428 DGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504 (513)
Q Consensus 428 ~~~~~ee~~~~~~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~ 504 (513)
...++++.+...+....|..+|..||++++.||.++| .+++|++|||+.||||..+|++++.+|+++||....
T Consensus 14 ~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~----~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 14 PEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSY----YRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH----TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3445777788888999999999999999999999999 789999999999999999999999999999997654
No 18
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=98.92 E-value=2.1e-09 Score=84.31 Aligned_cols=64 Identities=8% Similarity=-0.021 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010338 440 LLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 507 (513)
Q Consensus 440 ~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~ 507 (513)
+....|..+|+.|||+++.||.++| ..++|++|||+.||+|..+|+++..+|+++||.......
T Consensus 4 e~~~~l~~~l~~L~~~~r~il~l~~----~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~ 67 (70)
T 2o8x_A 4 EDLVEVTTMIADLTTDQREALLLTQ----LLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDD 67 (70)
T ss_dssp HHHHHHHTTTTSSCHHHHHHHHHHH----TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhccc
Confidence 3456788899999999999999999 689999999999999999999999999999998765443
No 19
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.73 E-value=1.2e-08 Score=83.40 Aligned_cols=75 Identities=13% Similarity=0.060 Sum_probs=68.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHchhccCCCCcHHHHHHHHHHHHHHHHhhcCCcCCCccchHHHHHHHHHHHHHHH
Q 010338 268 CLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT 347 (513)
Q Consensus 268 ~~~gd~~Ar~~LI~~nlrLV~sIAkky~~~~~~g~~~eDLIQEG~iGLirAvekFDp~kG~rFSTYA~~wIR~aI~raI~ 347 (513)
+..|+..|++.|+..|.+.++.+|.++. ++..+.+|++||+|+.+|+..+.|++. ..|.+|++..+++.+.+.++
T Consensus 6 ~~~g~~~af~~l~~~~~~~l~~~~~~~~---~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R 80 (87)
T 1h3l_A 6 STAERSARFERDALEFLDQMYSAALRMT---RNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYR 80 (87)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999998 678899999999999999999999975 37999999999999988776
No 20
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.70 E-value=3.5e-08 Score=86.01 Aligned_cols=65 Identities=22% Similarity=0.146 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHH-hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010338 436 RQPALLRLALDDVL-DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504 (513)
Q Consensus 436 ~~~~~l~~~L~~aL-~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~ 504 (513)
.+..+....+..+| ..||++++.||.++| .+++|++|||+.||+|..+|+.+..+|+++||....
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~----~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFY----LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHH----TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 44556667788899 999999999999998 789999999999999999999999999999997544
No 21
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=98.67 E-value=4.5e-08 Score=83.77 Aligned_cols=77 Identities=21% Similarity=0.160 Sum_probs=68.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHchhccCCCCcHHHHHHHHHHHHHHHHhhcCCcCCCccchHHHHHHHHHHHH
Q 010338 265 VKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIR 344 (513)
Q Consensus 265 L~~~~~gd~~Ar~~LI~~nlrLV~sIAkky~~~~~~g~~~eDLIQEG~iGLirAvekFDp~kG~rFSTYA~~wIR~aI~r 344 (513)
+..+..|+..|++.|+..|.+.|+.+|.++ . +..+.+|++||+|+.+|+.+.+|++. ..|.+|++..+++.+.+
T Consensus 15 ~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~---~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d 88 (112)
T 2o7g_A 15 ALSAAKGNGRALEAFIKATQQDVWRFVAYL-S---DVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVAD 88 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-S---CHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-C---CHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHH
Confidence 555678999999999999999999999987 3 56789999999999999999999964 36999999999999999
Q ss_pred HHH
Q 010338 345 SMT 347 (513)
Q Consensus 345 aI~ 347 (513)
+++
T Consensus 89 ~~R 91 (112)
T 2o7g_A 89 HIR 91 (112)
T ss_dssp HTC
T ss_pred HHH
Confidence 887
No 22
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.59 E-value=2.8e-08 Score=82.70 Aligned_cols=64 Identities=19% Similarity=0.128 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010338 439 ALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 507 (513)
Q Consensus 439 ~~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~ 507 (513)
......+..++..||++|++||.+++ +++|.+|||+.||||..+|+.+..++++||+...+.+.
T Consensus 17 ~~~~~~l~~~l~~Lt~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l 80 (91)
T 2rnj_A 17 GSHMKKRAELYEMLTEREMEILLLIA-----KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQA 80 (91)
T ss_dssp --------CTGGGCCSHHHHHHHHHH-----TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 34455688899999999999999954 79999999999999999999999999999998766553
No 23
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.58 E-value=7.8e-08 Score=80.94 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010338 440 LLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 507 (513)
Q Consensus 440 ~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~ 507 (513)
+....|..+|..||++|++||.+++ +++|.+|||+.||||..+|+.+..++++||+...+.+.
T Consensus 16 ~~~~~l~~~l~~Lt~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l 78 (95)
T 3c57_A 16 PRGSHMQDPLSGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQA 78 (95)
T ss_dssp -----------CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC-
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3455678899999999999999975 78999999999999999999999999999998766543
No 24
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.57 E-value=1.1e-07 Score=76.28 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhh
Q 010338 443 LALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYL 508 (513)
Q Consensus 443 ~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~L 508 (513)
..|..++..||++|++||.+++ .++|.+|||+.||+|..+|+++..++++||+.....+.+
T Consensus 8 ~~l~~~l~~L~~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~ 68 (79)
T 1x3u_A 8 NDIRARLQTLSERERQVLSAVV-----AGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLV 68 (79)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHT-----TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3577888999999999999943 799999999999999999999999999999987765543
No 25
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.57 E-value=3.5e-10 Score=111.55 Aligned_cols=159 Identities=10% Similarity=-0.003 Sum_probs=111.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHchhccCCCCcHHHHH----HHHHHHHHHHHhhcCCcCCCccchHHHHHHH
Q 010338 264 QVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLC----QAGVKGLITAIDRFEPKRRFRLSTYGLFWIR 339 (513)
Q Consensus 264 ~L~~~~~gd~~Ar~~LI~~nlrLV~sIAkky~~~~~~g~~~eDLI----QEG~iGLirAvekFDp~kG~rFSTYA~~wIR 339 (513)
.+.++-.+|..+.+.+...|.+++..+..... .......|+. ||.++.+|+....|++.. .|.+|++..++
T Consensus 87 ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~---~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~ 161 (258)
T 3clo_A 87 IYRRIHPEDLVEKRLMEYKFFQKTFSMSPGER---LKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLY 161 (258)
T ss_dssp HHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHH---TTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEE
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHhcCHHhc---cCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHH
Confidence 44455567788899999999999999988765 4566677886 999999999999998654 68887765444
Q ss_pred HHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHhccCcccccCCCCCchhh
Q 010338 340 HAIIRSMTVSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEE 419 (513)
Q Consensus 340 ~aI~raI~~~r~iRlP~~~~~~~~ki~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLd~~~~~~~~e 419 (513)
+.+.+..+. . .+. +.
T Consensus 162 n~~~d~~r~------~----------------------------------------------------~~~-------~~ 176 (258)
T 3clo_A 162 SLSADQRPE------Q----------------------------------------------------GIY-------AT 176 (258)
T ss_dssp EECSCCCCC------S----------------------------------------------------SCC-------CE
T ss_pred HHHcchhhh------h----------------------------------------------------HHH-------HH
Confidence 322211000 0 000 00
Q ss_pred hhccccCCCCCCchhhhHHHHHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010338 420 FINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKL 499 (513)
Q Consensus 420 ~~d~l~d~~~~~~ee~~~~~~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKL 499 (513)
.... ..... .... .+..++..||++|++||.+++ +++|.+|||+.||+|..+|+.+..+|++||
T Consensus 177 ~~~~-~~~~~--~~~~--------~~~~~~~~L~~~erevl~L~~-----~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL 240 (258)
T 3clo_A 177 ITQM-ERGEV--ETLS--------LSEEHRNILSEREKEILRCIR-----KGLSSKEIAATLYISVNTVNRHRQNILEKL 240 (258)
T ss_dssp EEET-TTTEE--EECC--------CHHHHTTSSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHhh-ccccc--ccch--------hhHHHHccCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 0000 00000 0000 145667899999999999986 799999999999999999999999999999
Q ss_pred hCcchhhhh
Q 010338 500 KHPTRVDYL 508 (513)
Q Consensus 500 R~~~~~~~L 508 (513)
|...+.+..
T Consensus 241 ~~~~~~~~~ 249 (258)
T 3clo_A 241 SVGNSIEAC 249 (258)
T ss_dssp TCSSHHHHH
T ss_pred cCCCHHHHH
Confidence 987665443
No 26
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.50 E-value=1.8e-07 Score=81.53 Aligned_cols=61 Identities=23% Similarity=0.165 Sum_probs=54.2
Q ss_pred HHHHHHHHH-hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh
Q 010338 441 LRLALDDVL-DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRV 505 (513)
Q Consensus 441 l~~~L~~aL-~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~ 505 (513)
....+..++ ..|||+++.||.++| .+++|++|||+.||+|..+|+.+..+|+++||.....
T Consensus 11 ~~~~l~~~l~~~L~~~~r~vl~l~y----~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 72 (113)
T 1s7o_A 11 RMNALFEFYAALLTDKQMNYIELYY----ADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMK 72 (113)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHH----HTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788 899999999999998 6899999999999999999999999999999975543
No 27
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.47 E-value=7.3e-08 Score=82.46 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=53.4
Q ss_pred HHHHHHHHH-hcCCHHHHHHHhHHhcCCC---CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010338 441 LRLALDDVL-DSLKPKESLVIRQRFGLDG---KGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504 (513)
Q Consensus 441 l~~~L~~aL-~~L~~rEr~VL~lRyGL~~---~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~ 504 (513)
..+.+..+| +-|+++|+.+|.+||||.+ ..++|+.|||+.+|+|+++|+++ .++|++|....+
T Consensus 24 ~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k 90 (101)
T 1jhg_A 24 QNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELR 90 (101)
T ss_dssp HTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHH
Confidence 344566777 5699999999999999964 45699999999999999999999 899999986443
No 28
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.44 E-value=2e-07 Score=76.29 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhh
Q 010338 444 ALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYL 508 (513)
Q Consensus 444 ~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~L 508 (513)
.+..++..|+++|++||.+++ +++|.+|||+.||||..+|+.+..++++||+...+.+..
T Consensus 14 ~~~~~~~~Lt~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~ 73 (82)
T 1je8_A 14 TTERDVNQLTPRERDILKLIA-----QGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAA 73 (82)
T ss_dssp ---CCGGGSCHHHHHHHHHHT-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 356778899999999999954 789999999999999999999999999999987765543
No 29
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=98.29 E-value=8.9e-07 Score=69.78 Aligned_cols=59 Identities=29% Similarity=0.241 Sum_probs=50.0
Q ss_pred HHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhh
Q 010338 445 LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYL 508 (513)
Q Consensus 445 L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~L 508 (513)
+...+..||++|+.||.+.+ +++|.+|||+.||+|..+|+++..+++++|+...+.+.+
T Consensus 5 ~~~~~~~L~~~e~~il~~~~-----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~~~ 63 (74)
T 1fse_A 5 EFQSKPLLTKREREVFELLV-----QDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAV 63 (74)
T ss_dssp ---CCCCCCHHHHHHHHHHT-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 44567789999999999943 789999999999999999999999999999987765543
No 30
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=97.97 E-value=1.4e-05 Score=66.58 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=47.6
Q ss_pred HHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010338 447 DVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 507 (513)
Q Consensus 447 ~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~ 507 (513)
.....||++|++||.+.+ +++|.+|||+.||||..+|+.+..++++||.-..+.+.
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-----~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r~~l 80 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-----KGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEA 80 (90)
T ss_dssp ----CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred ccccCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 446789999999999987 79999999999999999999999999999987665443
No 31
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=97.92 E-value=1e-05 Score=61.47 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=43.7
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010338 454 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 507 (513)
Q Consensus 454 ~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~ 507 (513)
|+|++||.+ | .+++|.+|||+.||+|..+|+.+..++++||+...+.+.
T Consensus 1 ~re~~vl~l-~----~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l 49 (61)
T 2jpc_A 1 LRERQVLKL-I----DEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTEL 49 (61)
T ss_dssp CHHHHHHHH-H----HTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred CHHHHHHHH-H----HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 479999999 5 479999999999999999999999999999998766544
No 32
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=97.87 E-value=2.1e-05 Score=66.88 Aligned_cols=53 Identities=30% Similarity=0.321 Sum_probs=47.7
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 507 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~ 507 (513)
..||++|++||.+.+ +++|.+|||+.||||..+|+....++++||.-..+.+.
T Consensus 33 ~~Lt~re~~Vl~l~~-----~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~el 85 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA-----EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIAL 85 (99)
T ss_dssp SSCCHHHHHHHHHHH-----HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 569999999999966 69999999999999999999999999999987666543
No 33
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.38 E-value=0.00028 Score=68.05 Aligned_cols=52 Identities=21% Similarity=0.138 Sum_probs=47.1
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 507 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~ 507 (513)
.||++|++||.+.+ +++|.+|||++||||..||+.+..++++||.-..+.+.
T Consensus 175 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~ 226 (236)
T 2q0o_A 175 MLSPREMLCLVWAS-----KGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQL 226 (236)
T ss_dssp SCCHHHHHHHHHHH-----TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHH
Confidence 59999999999965 79999999999999999999999999999987666543
No 34
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.34 E-value=0.00032 Score=67.58 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=46.7
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 507 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~ 507 (513)
.||++|++||.+.+ +++|.+|||+.||||..+|+.+..++++||.-..+.+.
T Consensus 173 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~ 224 (234)
T 1l3l_A 173 WLDPKEATYLRWIA-----VGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHL 224 (234)
T ss_dssp CCCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHH
Confidence 49999999999965 79999999999999999999999999999987665443
No 35
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=97.19 E-value=0.00051 Score=66.54 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=47.4
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 507 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~ 507 (513)
..||++|++||.+.. +++|.+|||+.||||..||+.+..++++||.-..+.+.
T Consensus 174 ~~Lt~re~~vl~~~~-----~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~ 226 (237)
T 3szt_A 174 VRLTARETEMLKWTA-----VGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEA 226 (237)
T ss_dssp CCCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCHHHH
Confidence 359999999999976 79999999999999999999999999999987665443
No 36
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=97.11 E-value=0.00063 Score=67.19 Aligned_cols=51 Identities=29% Similarity=0.245 Sum_probs=46.9
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhh
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVD 506 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~ 506 (513)
.||++|++||.+.. +++|.+|||++||||..||+.+..++++||.-..+.+
T Consensus 197 ~Lt~re~~vl~~~~-----~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~~~~~ 247 (265)
T 3qp6_A 197 PLSQREYDIFHWMS-----RGKTNWEIATILNISERTVKFHVANVIRKLNANNRTH 247 (265)
T ss_dssp CCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHH
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHH
Confidence 59999999999987 7999999999999999999999999999998766544
No 37
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.93 E-value=0.00097 Score=47.25 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=33.0
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.|++.++..+...| ..++|..+||+.||||+.+|+.++.+
T Consensus 5 ~l~~~~~~~i~~~~----~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMK----LLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 47888886666666 46899999999999999999988754
No 38
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.66 E-value=0.0062 Score=56.03 Aligned_cols=59 Identities=24% Similarity=0.335 Sum_probs=50.0
Q ss_pred HHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhh
Q 010338 445 LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYL 508 (513)
Q Consensus 445 L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~L 508 (513)
+...+..|+++|++|+.+.. .++|.++||+.||+|..+|+.+..+.++||....+.+..
T Consensus 136 ~~~~~~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~~~~~~~i 194 (208)
T 1yio_A 136 LEQLFSSLTGREQQVLQLTI-----RGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLV 194 (208)
T ss_dssp HHHHHHTSCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHH-----cCCcHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34456679999999998865 678999999999999999999999999999876655443
No 39
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=96.55 E-value=0.0049 Score=52.51 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=42.6
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR 500 (513)
.+++.-..|-.++| .+++|..|||+.||||+.+|.+++.+|...+-
T Consensus 18 ~~~~~~~~~A~lyY----v~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVL----VDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHH----TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 58888899999999 89999999999999999999999999998863
No 40
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.25 E-value=0.0025 Score=47.14 Aligned_cols=39 Identities=23% Similarity=0.105 Sum_probs=30.0
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
+++..+.|+.+ | ..++|..|||+.||||+.+|+++..+|
T Consensus 17 ~~~~~~~i~~l-~----~~g~s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 17 EDDLVSVAHEL-A----KMGYTVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp HHHHHHHHHHH-H----HTTCCHHHHHHHHTSCHHHHHHHHTC-
T ss_pred CHHHHHHHHHH-H----HcCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 34455666666 4 368899999999999999999987654
No 41
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.10 E-value=0.011 Score=54.59 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=47.0
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhh
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDY 507 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~ 507 (513)
..|+++|.+|+.+.. +++|.+|||+.+++|..+|+.+..+.++||.-..+.+.
T Consensus 153 ~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~~~r~~l 205 (215)
T 1a04_A 153 NQLTPRERDILKLIA-----QGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEA 205 (215)
T ss_dssp GGSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred cCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHcCCCCHHHH
Confidence 359999999999876 67899999999999999999999999999987665543
No 42
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=95.69 E-value=0.018 Score=54.17 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=46.1
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhh
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVD 506 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~ 506 (513)
..|+++|.+||.+.. +++|.+|||+.|++|..||+.+..+.++||.-..+.+
T Consensus 148 ~~LT~rE~~vL~~l~-----~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~~~~r~~ 199 (225)
T 3c3w_A 148 SGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQ 199 (225)
T ss_dssp TTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCCSSCH
T ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHHH
Confidence 469999999998876 6799999999999999999999999999997655543
No 43
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=95.11 E-value=0.025 Score=52.90 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=46.5
Q ss_pred HhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhh
Q 010338 449 LDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVD 506 (513)
Q Consensus 449 L~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~ 506 (513)
...|+++|.+||.+.. .++|.++||+.|++|..+|+.+..+.++||.-..+.+
T Consensus 157 ~~~Lt~rE~~vL~~l~-----~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~~~~~~ 209 (225)
T 3klo_A 157 YAKLTKREQQIIKLLG-----SGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQ 209 (225)
T ss_dssp HHTSCHHHHHHHHHHT-----TTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCCSSHHH
T ss_pred cccCCHHHHHHHHHHH-----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHHH
Confidence 3469999999999865 6899999999999999999999999999997665544
No 44
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=95.06 E-value=0.006 Score=67.30 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=13.3
Q ss_pred hhcCCCChHHHHHHhcCCCCCCChHHHHHHHHHHhHhH
Q 010338 195 EYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMK 232 (513)
Q Consensus 195 ~~~~~~d~~~~yl~~i~~~plLt~eEE~~L~~~iq~~~ 232 (513)
+.+..+|+|+|||++||.+||||.++|+.|++.|+.+.
T Consensus 90 ~~~~~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~ 127 (613)
T 3iyd_F 90 EIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 (613)
T ss_dssp ---------------C--------CSSSTTTHHHHHHH
T ss_pred cccCCCCcHHHHHHHhcccccCCchhHHHHHHHHHHhH
Confidence 34567999999999999999999999999999997654
No 45
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=94.99 E-value=0.079 Score=50.07 Aligned_cols=64 Identities=23% Similarity=0.244 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhh
Q 010338 440 LLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYL 508 (513)
Q Consensus 440 ~l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~L 508 (513)
.........+..|+.+++.|+.+.. .+++..+||..||+|..+|+....++++||.-..+.+.+
T Consensus 187 ~~~~~~~~~l~~L~~r~~~i~~~~~-----~g~~~~eia~~l~~s~~tv~~~l~~i~~kl~~~~~~elv 250 (258)
T 3p7n_A 187 ARRERAAEMLKTLSPRQLEVTTLVA-----SGLRNKEVAARLGLSEKTVKMHRGLVMEKLNLKTSADLV 250 (258)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 3345667888999999999999876 578999999999999999999999999999877665443
No 46
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=93.44 E-value=0.059 Score=38.23 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+.|..+||+.||||+.+|..++.+
T Consensus 20 ~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 20 KGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp TTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4689999999999999999987643
No 47
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=92.39 E-value=0.11 Score=48.06 Aligned_cols=51 Identities=12% Similarity=-0.019 Sum_probs=43.2
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHhCc
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN---ISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~Lg---ISrerVRqi~~rALkKLR~~ 502 (513)
.|+++|.+||.+..- +.++..|.++||+.++ +|..+|+.+..+.++||...
T Consensus 145 ~Lt~rE~~vl~~l~~-~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~~ 198 (220)
T 1p2f_A 145 HLPKKEFEILLFLAE-NAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIEDD 198 (220)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCSS
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcc
Confidence 599999999987651 1123599999999999 99999999999999999753
No 48
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.05 E-value=0.12 Score=41.36 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=29.6
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 454 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 454 ~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+.++.||.+-.-...++..|..|||+.||||+.+|++++.+
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~ 54 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 54 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 34566765544333345789999999999999999876544
No 49
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=91.87 E-value=0.16 Score=47.78 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=42.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhCc
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~L-----gISrerVRqi~~rALkKLR~~ 502 (513)
.|+++|.+||.+..- +.+...|.+|||+.+ ++|..+|+....+.++||...
T Consensus 153 ~LT~rE~~vL~~l~~-~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~~ 208 (238)
T 2gwr_A 153 SLTPLEFDLLVALAR-KPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKD 208 (238)
T ss_dssp CCCHHHHHHHHHHHH-STTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCSS
T ss_pred ccCHHHHHHHHHHHH-CCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhccC
Confidence 599999999987651 112359999999999 999999999999999999753
No 50
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=91.54 E-value=0.14 Score=47.53 Aligned_cols=51 Identities=14% Similarity=0.063 Sum_probs=43.4
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhCc
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~L-----gISrerVRqi~~rALkKLR~~ 502 (513)
.|+++|.+||.+-.- +.++..|.+|||+.+ ++|..+|+.+..+.++||...
T Consensus 156 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~~ 211 (230)
T 2oqr_A 156 TLPLKEFDLLEYLMR-NSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEAD 211 (230)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCSS
T ss_pred ecCHHHHHHHHHHHh-CCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhhC
Confidence 599999999987651 123459999999999 999999999999999999753
No 51
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=91.28 E-value=0.13 Score=47.38 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=43.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHhCcc
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN-----ISREMVRKHEVKGLMKLKHPT 503 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~Lg-----ISrerVRqi~~rALkKLR~~~ 503 (513)
.|+++|.+||.+..- +.+...|.+|||+.++ +|..+|+.+..+.++||....
T Consensus 151 ~Lt~rE~~vL~~l~~-~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~~~ 207 (225)
T 1kgs_A 151 DLTKKEYQILEYLVM-NKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGF 207 (225)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHTTC
T ss_pred ecCHHHHHHHHHHHh-CCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhCCC
Confidence 599999999987651 1123499999999998 999999999999999997543
No 52
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=91.26 E-value=0.2 Score=43.15 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=33.4
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.|++.++..|...+ ..++|..+||+.||||+.+|+.+..+
T Consensus 6 ~~s~~~r~~i~~~~----~~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 6 ALSDTERAQLDVMK----LLNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 47778877776666 46899999999999999999998765
No 53
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=91.22 E-value=0.28 Score=39.78 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=29.4
Q ss_pred HHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 010338 455 KESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500 (513)
Q Consensus 455 rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR 500 (513)
.++.||.+......+...|..|||+.||||+.+|++. |.+|.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~----L~~Le 52 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRV----LYSLA 52 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH----HHHHH
Confidence 3555665544333345799999999999999888855 55554
No 54
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=90.94 E-value=0.3 Score=40.93 Aligned_cols=42 Identities=19% Similarity=0.029 Sum_probs=32.9
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 496 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rAL 496 (513)
.+++.++.-+...+ ..++|..+||+.||||+.+|+++..+..
T Consensus 17 ~~s~~~r~~i~~~~----~~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMA----ADGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46666665555555 3678999999999999999999988754
No 55
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=90.80 E-value=0.19 Score=43.84 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=28.0
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
.|+.| .+|+.+-. +++|+.|||+.+|+|..||.+.
T Consensus 61 aLs~R-~eV~klL~-----~G~syreIA~~~g~S~aTIsRv 95 (119)
T 3kor_A 61 SLSQR-LQVAKMIK-----QGYTYATIEQESGASTATISRV 95 (119)
T ss_dssp HHHHH-HHHHHHHH-----HTCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHH-HHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHH
Confidence 45556 66777754 5799999999999999999863
No 56
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=90.52 E-value=0.13 Score=47.69 Aligned_cols=52 Identities=10% Similarity=-0.095 Sum_probs=42.2
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHhCcc
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN-----ISREMVRKHEVKGLMKLKHPT 503 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~Lg-----ISrerVRqi~~rALkKLR~~~ 503 (513)
.|+++|.+||.+..- +.+...|.++||+.++ +|..+|+.+..+.++||....
T Consensus 159 ~Lt~rE~~vL~~l~~-g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~~~ 215 (233)
T 1ys7_A 159 DLTKREFDLLAVLAE-HKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGG 215 (233)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHCC-
T ss_pred ccCHHHHHHHHHHHh-CCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhccCC
Confidence 599999999987651 1123499999999998 999999999999999998643
No 57
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=90.13 E-value=0.056 Score=52.77 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC--CCHHHHHHHHHHHHHHHh
Q 010338 444 ALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN--ISREMVRKHEVKGLMKLK 500 (513)
Q Consensus 444 ~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~Lg--ISrerVRqi~~rALkKLR 500 (513)
.+...+..|++.++. |...| +.+.|.+|||+.|| ||.++|+.++.+|++.|.
T Consensus 191 ~l~e~i~~l~~~~~~-L~~~~----~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 191 HMVETINKLSRTARQ-LQQEL----GREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-HHHHh----CCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 345566778887777 44556 36789999999999 999999999999987763
No 58
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=89.41 E-value=0.26 Score=46.53 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=29.0
Q ss_pred HHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010338 457 SLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 496 (513)
Q Consensus 457 r~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rAL 496 (513)
..+..+ | ..++|..|||+.||||+.+|++++..|.
T Consensus 15 ~ria~~-y----~~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 15 LRLMRM-K----NDGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHHH-H----HTTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHH-H----HcCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 344445 5 4689999999999999999999988874
No 59
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=89.14 E-value=0.48 Score=41.60 Aligned_cols=43 Identities=16% Similarity=-0.006 Sum_probs=33.9
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLM 497 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALk 497 (513)
.+++.++.-+...+ ..++|..+||+.||||+.+|+++..+...
T Consensus 32 ~~s~e~r~~iv~~~----~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 32 PLPDVVRQRIVELA----HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp CCCHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46666666665555 35789999999999999999999887543
No 60
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=88.98 E-value=0.23 Score=47.41 Aligned_cols=54 Identities=20% Similarity=0.121 Sum_probs=44.8
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHH-----HhCCCHHHHHHHHHHHHHHHhCcchh
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAG-----NLNISREMVRKHEVKGLMKLKHPTRV 505 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~-----~LgISrerVRqi~~rALkKLR~~~~~ 505 (513)
.|+++|.+||.+..- +.+..+|.+|||+ .+++|..+|+.+..+.++||....+.
T Consensus 182 ~LT~rE~evL~ll~~-g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~~~~~ 240 (249)
T 3q9s_A 182 RLSPKEFDILALLIR-QPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRDLDGY 240 (249)
T ss_dssp CCCHHHHHHHHHHHH-STTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCCCSCC
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhcCCCC
Confidence 599999999998762 1234599999999 58899999999999999999865443
No 61
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=88.43 E-value=0.38 Score=39.25 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+.|..|||+.||||+++|++++.+
T Consensus 30 g~sa~eLAk~LgiSk~aVr~~L~~ 53 (82)
T 1oyi_A 30 GATAAQLTRQLNMEKREVNKALYD 53 (82)
T ss_dssp TEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 399999999999999999988765
No 62
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=88.34 E-value=0.65 Score=37.53 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVKGL 496 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~rAL 496 (513)
.+.|..+||..||||+.+|+++..+..
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 358999999999999999999986543
No 63
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=88.27 E-value=0.14 Score=47.43 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=42.7
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHhCc
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN-----ISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~Lg-----ISrerVRqi~~rALkKLR~~ 502 (513)
.|+++|.+||.+-.- +.+...|.+|||+.++ +|..+|+.+..+.++||...
T Consensus 143 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~~ 198 (223)
T 2hqr_A 143 EVKGKPFEVLTHLAR-HRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKP 198 (223)
T ss_dssp CCCSTTTHHHHHHHH-TCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHTT
T ss_pred ecCHHHHHHHHHHHh-CCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhcC
Confidence 599999999988651 0112399999999999 99999999999999999854
No 64
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=88.23 E-value=0.79 Score=39.45 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=34.7
Q ss_pred HHhcCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHH
Q 010338 448 VLDSLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 448 aL~~L~~rEr~VL~lRyGL~~~~~-~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..-.|++.+..||..-..- ..+ .|..|||+.+|+|+++|.+.+.+
T Consensus 20 ~~~gLt~~e~~il~~L~~~--~~~~~t~~eLa~~l~~s~sTV~r~L~~ 65 (123)
T 3r0a_A 20 CALNLTKADLNVMKSFLNE--PDRWIDTDALSKSLKLDVSTVQRSVKK 65 (123)
T ss_dssp HHHTCCHHHHHHHHHHHHS--TTCCEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHC--CCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4457999999998876531 223 89999999999999999855443
No 65
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=87.83 E-value=0.74 Score=40.59 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=33.2
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..|++.++.||.+-.. ....|+.|||+.+|+|+.+|+++..+
T Consensus 5 ~~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 46 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSE---NSRLTYRELADILNTTRQRIARRIDK 46 (151)
T ss_dssp -CCCHHHHHHHHHHHH---CTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4588999999876442 35799999999999999999876544
No 66
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=87.80 E-value=1.1 Score=36.15 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=33.1
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.|++.+..||..-.. ..+.|..|||+.+|+|+.+|++++.+
T Consensus 17 ~l~~~~~~il~~l~~---~~~~s~~ela~~l~is~~tv~~~l~~ 57 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLE---RGGMRVSEIARELDLSARFVRDRLKV 57 (109)
T ss_dssp CCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 478999988876542 35799999999999999999866544
No 67
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=87.58 E-value=1.2 Score=37.90 Aligned_cols=52 Identities=17% Similarity=0.136 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCHHHHHHHhHHhcC-CCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 442 RLALDDVLDSLKPKESLVIRQRFGL-DGKGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 442 ~~~L~~aL~~L~~rEr~VL~lRyGL-~~~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
...|...+..|++.|+.|......= +....+|..|||+..|+|..+|.+..+
T Consensus 9 ~~~i~~~~~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~k 61 (111)
T 2o3f_A 9 LAIIQSMXHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCX 61 (111)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHH
Confidence 3457777889999999998776520 011369999999999999999987654
No 68
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=87.58 E-value=0.62 Score=46.59 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=31.5
Q ss_pred HHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010338 458 LVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLM 497 (513)
Q Consensus 458 ~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALk 497 (513)
.|..++| .+++|..|||+.||||+.+||+.+..+.+
T Consensus 12 ~ia~l~~----~~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 12 KIAQLYY----EQDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHH----TSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4667777 68899999999999999999999988765
No 69
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=87.00 E-value=0.63 Score=35.95 Aligned_cols=40 Identities=5% Similarity=0.043 Sum_probs=26.9
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
+++....||.+--- +..+.|..|||+.||+|+++|.+++.
T Consensus 8 m~~~~~~IL~~L~~--~~~~~s~~eLA~~lglsr~tv~~~l~ 47 (67)
T 2heo_A 8 GDNLEQKILQVLSD--DGGPVAIFQLVKKCQVPKKTLNQVLY 47 (67)
T ss_dssp -CHHHHHHHHHHHH--HCSCEEHHHHHHHHCSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH--cCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 34445556554321 13579999999999999888886543
No 70
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=86.95 E-value=0.55 Score=43.66 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=32.9
Q ss_pred cCCHHHHHHHhHHhcC--CCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGL--DGKGDRTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL--~~~~~~Tl~EIA~~LgISrerVRqi~ 492 (513)
.|+++|++||.....+ ..+.+.|..|||+.||+|..+|++++
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 5899999999875422 12357899999999999999887665
No 71
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=86.89 E-value=0.93 Score=39.80 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=32.7
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.|++.++.||.+-.. ....|+.|||+.+|+|+++|+.+..+
T Consensus 2 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 42 (144)
T 2cfx_A 2 KLDQIDLNIIEELKK---DSRLSMRELGRKIKLSPPSVTERVRQ 42 (144)
T ss_dssp CCCHHHHHHHHHHHH---CSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 378888888876542 35799999999999999999866544
No 72
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=86.32 E-value=0.96 Score=42.68 Aligned_cols=50 Identities=16% Similarity=0.038 Sum_probs=43.6
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhC
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~L-----gISrerVRqi~~rALkKLR~ 501 (513)
.|+++|.+||.+..- +.++..|.++|++.+ +++..+|+.+..+.++||..
T Consensus 176 ~LT~rE~~iL~~l~~-~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFVI-NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 599999999988762 224679999999999 88999999999999999975
No 73
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=86.07 E-value=1.2 Score=36.14 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=33.8
Q ss_pred HhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 449 LDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 449 L~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
...|++.+..+|...+.- ..+.|..|||+.+|+|+.+|++++..
T Consensus 16 ~~~l~~~~~~~l~~l~~~--~~~~t~~ela~~l~is~~tv~~~l~~ 59 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVEI--EKPITSEELADIFKLSKTTVENSLKK 59 (109)
T ss_dssp HHTCCHHHHHHHHHHHHH--CSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 357899998887655411 35799999999999999999865543
No 74
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=86.05 E-value=1.1 Score=39.53 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=33.2
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.|++.++.||.+-.. ....|+.|||+.+|+|+++|+++..+
T Consensus 4 ~ld~~~~~iL~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 44 (150)
T 2w25_A 4 ALDDIDRILVRELAA---DGRATLSELATRAGLSVSAVQSRVRR 44 (150)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 488899988876431 35799999999999999999876554
No 75
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=85.92 E-value=1.9 Score=36.43 Aligned_cols=51 Identities=10% Similarity=0.136 Sum_probs=39.0
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 441 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 441 l~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+...+...+. .|++.+..||..-+. ..+.|..|||+.+|+|+.+|.++..+
T Consensus 14 ~~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~s~~tvs~~l~~ 66 (138)
T 3bpv_A 14 HRVFIGRELGHLNLTDAQVACLLRIHR---EPGIKQDELATFFHVDKGTIARTLRR 66 (138)
T ss_dssp HHHHHHHHSGGGTCCHHHHHHHHHHHH---STTCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555554 489999999887663 36799999999999999999876544
No 76
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=85.84 E-value=1.4 Score=37.71 Aligned_cols=52 Identities=13% Similarity=0.237 Sum_probs=37.9
Q ss_pred HHHHHHHHHhc----CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 441 LRLALDDVLDS----LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 441 l~~~L~~aL~~----L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
+...+...+.. |++.|-.||..-+. ..+.|..|||+.+|+|+++|.++..+-
T Consensus 20 ~~~~~~~~l~~~~~~lt~~~~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 75 (142)
T 3ech_A 20 VRTRIQSELDCQRLDLTPPDVHVLKLIDE---QRGLNLQDLGRQMCRDKALITRKIREL 75 (142)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHH---TTTCCHHHHHHHHC---CHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCHHHHHHHHHHH
Confidence 44556666654 99999999988763 358999999999999999999766543
No 77
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=85.69 E-value=1.1 Score=39.48 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=33.2
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.|++.++.||.+-.. ....|+.|||+.+|+|+++|+++..+=
T Consensus 4 ~ld~~~~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~L 45 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN---DGKAPLREISKITGLAESTIHERIRKL 45 (151)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478888888876431 347999999999999999998776543
No 78
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=85.53 E-value=2.4 Score=36.20 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=37.0
Q ss_pred HHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 444 ALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 444 ~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+...+. .|++.|..||..-+ .++.|..|||+.+|+|+++|+++..+
T Consensus 25 ~~~~~~~~~~l~~~~~~iL~~l~----~~~~~~~ela~~l~~s~~tvs~~l~~ 73 (146)
T 2gxg_A 25 ELNRRLGELNLSYLDFLVLRATS----DGPKTMAYLANRYFVTQSAITASVDK 73 (146)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT----TSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh----cCCcCHHHHHHHhCCCchhHHHHHHH
Confidence 3444453 48999999988766 45899999999999999999876544
No 79
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=85.52 E-value=1.4 Score=35.94 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=29.7
Q ss_pred CCHHHHHHHh-HHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 452 LKPKESLVIR-QRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 452 L~~rEr~VL~-lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.|+.++.-+. +.. .. +.|+.+||..+|||+.+|+++..+.
T Consensus 6 ys~e~k~~~v~~~~----~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 6 YSEEFKRDAVALYE----NSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCHHHHHHHHHHHT----TGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH----HcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 5566664443 443 23 7899999999999999999987654
No 80
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=85.44 E-value=1.2 Score=39.92 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=33.1
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.|++.++.||.+-.. ....|+.|||+.+|+|+.+|++++.+
T Consensus 7 ~ld~~~~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 47 (162)
T 2p5v_A 7 TLDKTDIKILQVLQE---NGRLTNVELSERVALSPSPCLRRLKQ 47 (162)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 488888888876542 34689999999999999999977654
No 81
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=85.37 E-value=1.1 Score=38.52 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=33.5
Q ss_pred HHhcCCHHHHHHHhHHhcC-CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 448 VLDSLKPKESLVIRQRFGL-DGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 448 aL~~L~~rEr~VL~lRyGL-~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+..|++.+..+|...+-+ ....+.|..+||+.+|+|+.+|++++.+
T Consensus 7 ~~~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~ 54 (139)
T 2x4h_A 7 QMSNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSH 54 (139)
T ss_dssp ----CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHH
Confidence 3456888888887765533 2235789999999999999999966544
No 82
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=85.31 E-value=2.1 Score=35.41 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHhcCC-HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 444 ALDDVLDSLK-PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 444 ~L~~aL~~L~-~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+..++..|. +....||.+-. ..++|..|||+.+|+|+++|++++..
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~----~~~~~~~ela~~l~is~stvs~~L~~ 62 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLS----VSEASVGHISHQLNLSQSNVSHQLKL 62 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHH----HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3445555554 55566766544 35789999999999999999976543
No 83
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=85.26 E-value=1.4 Score=37.79 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=32.2
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.|++.|..||..-+. .+.|..|||+.+|+|+.+|+++..+
T Consensus 35 ~lt~~~~~iL~~l~~----~~~t~~eLa~~l~~s~~tvs~~l~~ 74 (146)
T 3tgn_A 35 ALTNTQEHILMLLSE----ESLTNSELARRLNVSQAAVTKAIKS 74 (146)
T ss_dssp CCCHHHHHHHHHHTT----CCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 478888888877662 3399999999999999999966544
No 84
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=85.04 E-value=1 Score=39.00 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=31.0
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
|++.++.||..-.. ....|+.|||+.+|+|+.+|++...+
T Consensus 2 ld~~~~~il~~L~~---~~~~~~~ela~~lg~s~~tv~~~l~~ 41 (141)
T 1i1g_A 2 IDERDKIILEILEK---DARTPFTEIAKKLGISETAVRKRVKA 41 (141)
T ss_dssp CCSHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 66778888775431 34689999999999999999866554
No 85
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=84.97 E-value=1.3 Score=39.18 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=33.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.|++.++.||.+-.. ....|+.|||+.+|+|+++|+++..+=
T Consensus 5 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~L 46 (152)
T 2cg4_A 5 LIDNLDRGILEALMG---NARTAYAELAKQFGVSPETIHVRVEKM 46 (152)
T ss_dssp CCCHHHHHHHHHHHH---CTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478888888876431 357899999999999999999776543
No 86
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=84.80 E-value=1.4 Score=38.64 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=30.8
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
|++.+..||.+-. .....|+.|||+.+|+|+++|+++..+
T Consensus 1 ld~~~~~il~~L~---~~~~~~~~ela~~lg~s~~tv~~~l~~ 40 (150)
T 2pn6_A 1 MDEIDLRILKILQ---YNAKYSLDEIAREIRIPKATLSYRIKK 40 (150)
T ss_dssp CCHHHHHHHHHHT---TCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHH---HcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5677778876543 134799999999999999999866544
No 87
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=84.57 E-value=2.2 Score=36.32 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=37.0
Q ss_pred HHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 443 LALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 443 ~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..+...+. .|++.+..|+.+.+ +. ..+.|..|||+.+|+|+++|.++..+
T Consensus 13 ~~~~~~~~~~gl~~~~~~il~~L~-~~-~~~~t~~ela~~l~~~~stvs~~l~~ 64 (152)
T 1ku9_A 13 ELFSELAKIHGLNKSVGAVYAILY-LS-DKPLTISDIMEELKISKGNVSMSLKK 64 (152)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH-HC-SSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHHHH-Hc-CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33444443 48999999987764 22 25799999999999999999866543
No 88
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=84.42 E-value=3 Score=35.32 Aligned_cols=53 Identities=8% Similarity=0.031 Sum_probs=39.0
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 441 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 441 l~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+...+...+. .|++.|..||..-+.- +..+.|..+||+.+|+|+.+|.++..+
T Consensus 19 ~~~~~~~~~~~~~lt~~~~~iL~~l~~~-~~~~~~~~ela~~l~~~~~tvs~~l~~ 73 (141)
T 3bro_A 19 MSTRFDIFAKKYDLTGTQMTIIDYLSRN-KNKEVLQRDLESEFSIKSSTATVLLQR 73 (141)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHT-TTSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHC-CCCCcCHHHHHHHHCCCcchHHHHHHH
Confidence 3444555554 4899999998876642 123799999999999999999866544
No 89
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=84.29 E-value=2.2 Score=36.48 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=29.6
Q ss_pred CCHHHHHHHhHHhcCCC--CCCCCHHHHHHHhCCCHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDG--KGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~--~~~~Tl~EIA~~LgISrerVRqi 491 (513)
|++.|+.-|..|+-+-. ..++|+.+|++.+|+|..+|.+.
T Consensus 37 ~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsRv 78 (107)
T 3frw_A 37 CTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISRV 78 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHH
Confidence 67777766665553310 25799999999999999999863
No 90
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=84.16 E-value=2.9 Score=36.27 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=38.9
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 441 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 441 l~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+...+...+. .|++.|..||..-+. ..+.|..+||+.+|+++.+|.++..+
T Consensus 28 ~~~~~~~~l~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~i~~~tvs~~l~~ 80 (155)
T 3cdh_A 28 ASAQFHDHIRAQGLRVPEWRVLACLVD---NDAMMITRLAKLSLMEQSRMTRIVDQ 80 (155)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHSS---CSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3344555553 499999999887663 35799999999999999999876654
No 91
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=84.15 E-value=1.5 Score=35.18 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=32.2
Q ss_pred HHHhcC-CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 447 DVLDSL-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 447 ~aL~~L-~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++..| ++.+..||..-. ...+.|..|||+.+|+|+.+|++++.+
T Consensus 16 ~~~~~l~~~~~~~il~~l~---~~~~~s~~ela~~l~is~~tvs~~l~~ 61 (99)
T 3cuo_A 16 ALLKAMSHPKRLLILCMLS---GSPGTSAGELTRITGLSASATSQHLAR 61 (99)
T ss_dssp HHHHHHCSHHHHHHHHHHT---TCCSEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHhCChHHHHHHHHHH---hCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 334444 466777776544 245799999999999999999876543
No 92
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=84.13 E-value=1.5 Score=39.30 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=31.3
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
|++.++.||.+--. ....|+.|||+.+|+|+.+|+..+.+
T Consensus 1 lD~~d~~il~~L~~---~~~~s~~~la~~lg~s~~tv~~rl~~ 40 (162)
T 3i4p_A 1 MDRLDRKILRILQE---DSTLAVADLAKKVGLSTTPCWRRIQK 40 (162)
T ss_dssp CCHHHHHHHHHHTT---CSCSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 56677888776541 34689999999999999999977654
No 93
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=83.83 E-value=2.5 Score=35.71 Aligned_cols=53 Identities=11% Similarity=-0.025 Sum_probs=40.6
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 440 LLRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 440 ~l~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.+...+...+. .|++.|..||..-+. ..+.|..+||+.+|+|+.+|.++..+-
T Consensus 18 ~~~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~L 72 (138)
T 1jgs_A 18 KKDRLLNEYLSPLDITAAQFKVLCSIRC---AACITPVELKKVLSVDLGALTRMLDRL 72 (138)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHHHHHH---HSSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHh---cCCCCHHHHHHHHCCChHHHHHHHHHH
Confidence 34455666664 389999999887663 357899999999999999999766553
No 94
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=83.44 E-value=2 Score=36.30 Aligned_cols=49 Identities=6% Similarity=0.072 Sum_probs=37.5
Q ss_pred HHHHHHHh-cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 443 LALDDVLD-SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 443 ~~L~~aL~-~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..+...+. .|++.|..||..-+. .++.|..|||+.+|+|+.+|.++..+
T Consensus 26 ~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~ 75 (140)
T 2nnn_A 26 ALFANGIGNGLTPTQWAALVRLGE---TGPCPQNQLGRLTAMDAATIKGVVER 75 (140)
T ss_dssp HHHHHHCSSCCCHHHHHHHHHHHH---HSSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 33444443 699999999887653 34899999999999999999876544
No 95
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=83.31 E-value=1.9 Score=34.98 Aligned_cols=45 Identities=13% Similarity=0.289 Sum_probs=31.1
Q ss_pred HHHHHhcC-CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 445 LDDVLDSL-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 445 L~~aL~~L-~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
+..++..| ++....||.+-. ..+.|..|||+.+|+|+.+|++.+.
T Consensus 13 ~~~~~~~l~~~~r~~Il~~L~----~~~~~~~ela~~l~is~~tvs~~L~ 58 (98)
T 3jth_A 13 AVVLLKAMANERRLQILCMLH----NQELSVGELCAKLQLSQSALSQHLA 58 (98)
T ss_dssp HHHHHHHHCSHHHHHHHHHTT----TSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh----cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 44445555 455555554433 2589999999999999999986544
No 96
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=83.19 E-value=1.2 Score=33.09 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=22.2
Q ss_pred CCCC----HHHHHHHhCCCHHHHHHHHHHH
Q 010338 470 GDRT----LGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 470 ~~~T----l~EIA~~LgISrerVRqi~~rA 495 (513)
.+.| ..+||..|||++++|+++....
T Consensus 20 ~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 20 NDNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp HCTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred cCCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3567 9999999999999999997643
No 97
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=83.11 E-value=2.8 Score=35.44 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=34.7
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.|++.+..||..-+. ..+.|..+||+.+|+|+.+|+++..+-
T Consensus 28 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~is~~~vs~~l~~L 69 (142)
T 3bdd_A 28 GISLTRYSILQTLLK---DAPLHQLALQERLQIDRAAVTRHLKLL 69 (142)
T ss_dssp SSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999999887652 357999999999999999998765543
No 98
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=83.09 E-value=0.54 Score=41.90 Aligned_cols=40 Identities=18% Similarity=0.038 Sum_probs=30.8
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++..++.-|...+ ..++|..+||+.||||+.+|+++..+
T Consensus 25 ~~s~e~r~~ii~l~----~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLA----HQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHH----HHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45666665555545 35789999999999999999998865
No 99
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=82.97 E-value=2.1 Score=36.25 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhHHhcC-CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 442 RLALDDVLDSLKPKESLVIRQRFGL-DGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 442 ~~~L~~aL~~L~~rEr~VL~lRyGL-~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
...|...+..|++.|+.|......- +....+|..|+|+..|+|..+|-+..++
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kk 58 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKK 58 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3567788899999999998765421 1124699999999999999999876543
No 100
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=82.76 E-value=2.7 Score=35.80 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=38.6
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 441 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 441 l~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+...+...+. .|++.|..||..-+. ...+.|..+||+.+|+|+.+|.++..+
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~iL~~l~~--~~~~~t~~~la~~l~~s~~~vs~~l~~ 75 (146)
T 2fbh_A 22 WRAELDRRLSHLGLSQARWLVLLHLAR--HRDSPTQRELAQSVGVEGPTLARLLDG 75 (146)
T ss_dssp HHHHHHHHTGGGCCTTTHHHHHHHHHH--CSSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH--cCCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 3344555554 389999999877722 145799999999999999999876554
No 101
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=82.73 E-value=3.3 Score=35.81 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=38.6
Q ss_pred HHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 443 LALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 443 ~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
..+...+. .|++.|-.||..-+. .++.|..|||+.+|+++.+|.++..+-
T Consensus 28 ~~~~~~~~~~~lt~~q~~iL~~l~~---~~~~~~~eLa~~l~~~~~~vs~~l~~L 79 (149)
T 4hbl_A 28 QFYEKKLKQFGITYSQYLVMLTLWE---ENPQTLNSIGRHLDLSSNTLTPMLKRL 79 (149)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH---SSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444443 499999999888763 468899999999999999999766553
No 102
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=82.65 E-value=1.8 Score=39.53 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=33.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.|++.++.||.+-.. ....|+.|||+.+|+|..+|++.+.+
T Consensus 24 ~ld~~d~~IL~~L~~---~~~~s~~eLA~~lglS~~tv~~rl~~ 64 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN---DGKAPLREISKITGLAESTIHERIRK 64 (171)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 588899998876542 34799999999999999999977544
No 103
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=82.59 E-value=2.4 Score=36.27 Aligned_cols=53 Identities=8% Similarity=-0.005 Sum_probs=40.1
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 440 LLRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 440 ~l~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.+...+...+. .|++.|-.||..-+. .++.|..|||+.+|+++++|.++..+-
T Consensus 20 ~~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 74 (140)
T 3hsr_A 20 EIIKKYTNYLKEYDLTYTGYIVLMAIEN---DEKLNIKKLGERVFLDSGTLTPLLKKL 74 (140)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHSCT---TCEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 34445555554 399999998877653 468999999999999999999766543
No 104
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=82.52 E-value=3.2 Score=35.17 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 440 LLRLALDDVLDS--LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 440 ~l~~~L~~aL~~--L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+...+...+.. |++.|..||..-+.- +.++.|..|||+.+|+|+.+|.++..+
T Consensus 15 ~~~~~~~~~~~~~~lt~~~~~vL~~l~~~-~~~~~t~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3eco_A 15 EMKQKADQKLEQFDITNEQGHTLGYLYAH-QQDGLTQNDIAKALQRTGPTVSNLLRN 70 (139)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHHHHS-TTTCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhc-CCCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 344455555644 899999999877632 124899999999999999999876554
No 105
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=82.45 E-value=2.8 Score=36.08 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=37.7
Q ss_pred HHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 443 LALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 443 ~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..+...+. .|++.|..||..-+. ..+.|..+||+.+|+|+.+|.++..+
T Consensus 27 ~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~~vs~~l~~ 77 (152)
T 3bj6_A 27 AAVERGTLREGVTVGQRAILEGLSL---TPGATAPQLGAALQMKRQYISRILQE 77 (152)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34444443 499999999887663 35799999999999999999876554
No 106
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=82.44 E-value=3 Score=35.75 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=38.0
Q ss_pred HHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 442 RLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 442 ~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
...+...+. .|++.|-.||..-+. ..+.|..|||+.+|+++.+|.++..+
T Consensus 17 ~~~~~~~~~~~~lt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 68 (145)
T 3g3z_A 17 CNVFDKWIGQQDLNYNLFAVLYTLAT---EGSRTQKHIGEKWSLPKQTVSGVCKT 68 (145)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 334445553 489999999887653 34699999999999999999866554
No 107
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=82.40 E-value=1.9 Score=33.98 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+.|..|||+.+|+|+.+|++.+..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4699999999999999999866544
No 108
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=82.27 E-value=2.5 Score=36.60 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=39.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 441 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 441 l~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
+...+...+. .|++.|..||...+. ..+.|..|||+.+|+|+.+|.++..+-
T Consensus 32 ~~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~L 85 (153)
T 2pex_A 32 MHKLYRGLLKALDLTYPQYLVMLVLWE---TDERSVSEIGERLYLDSATLTPLLKRL 85 (153)
T ss_dssp HHHHHHHHTTTTTCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 3344455553 389999999887663 357999999999999999999766553
No 109
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=82.19 E-value=4.5 Score=33.83 Aligned_cols=47 Identities=13% Similarity=0.257 Sum_probs=35.0
Q ss_pred HHHHHHhc-CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 444 ALDDVLDS-LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 444 ~L~~aL~~-L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+..++.. .++.+..||..-. ..+.|+.|||+.+|+|+.+|++++.+
T Consensus 21 ~~~~~~~~l~~~~~~~il~~L~----~~~~s~~ela~~l~is~stvsr~l~~ 68 (119)
T 2lkp_A 21 QVASTLQALATPSRLMILTQLR----NGPLPVTDLAEAIGMEQSAVSHQLRV 68 (119)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH----HCCCCHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----HCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34444444 3577777877665 24799999999999999999977654
No 110
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=82.15 E-value=3.4 Score=35.44 Aligned_cols=51 Identities=14% Similarity=0.281 Sum_probs=39.0
Q ss_pred HHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 442 RLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 442 ~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
...+...+. .|++.|..||..-+. ..+.|..+||+.+|+|+.+|.++..+-
T Consensus 28 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~L 80 (150)
T 2rdp_A 28 KQRGREILTNYPITPPQFVALQWLLE---EGDLTVGELSNKMYLACSTTTDLVDRM 80 (150)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHHH
Confidence 334555554 489999999887663 357999999999999999999766543
No 111
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=82.04 E-value=13 Score=30.29 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 365 IQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 365 i~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
+.++...+...+...++.++||+.+|+|+..+..+.+.
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44555566677778899999999999999999888765
No 112
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=81.96 E-value=3.4 Score=33.72 Aligned_cols=46 Identities=15% Similarity=0.387 Sum_probs=31.6
Q ss_pred HHHHHHhcC-CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 444 ALDDVLDSL-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 444 ~L~~aL~~L-~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
.+..++..| .|.-..||.+-. ..++|..|||+.+|+|+.+|++++.
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~----~~~~~~~ela~~l~is~~tvs~~L~ 58 (102)
T 3pqk_A 12 EVANLLKTLSHPVRLMLVCTLV----EGEFSVGELEQQIGIGQPTLSQQLG 58 (102)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHH----TCCBCHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH----hCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344555555 444555555543 3579999999999999999986543
No 113
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=81.92 E-value=2.6 Score=36.86 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 440 LLRLALDDVLDS--LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 440 ~l~~~L~~aL~~--L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+...+...|.. |+..|-.||.+-+.- ...+.|..|||+.+|+++++|.++..+
T Consensus 19 ~l~~~~~~~l~~~gLt~~q~~vL~~L~~~-~~~~~t~~eLa~~l~~~~~tvs~~v~~ 74 (147)
T 4b8x_A 19 ILLGEVDAVVKPYGLTFARYEALVLLTFS-KSGELPMSKIGERLMVHPTSVTNTVDR 74 (147)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHHHTS-GGGEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHC-CCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344556666653 999999998876521 124689999999999999999876654
No 114
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=81.81 E-value=4.7 Score=35.05 Aligned_cols=51 Identities=12% Similarity=0.009 Sum_probs=39.2
Q ss_pred HHHHHHHH---hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 442 RLALDDVL---DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 442 ~~~L~~aL---~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
...+...+ ..|++.|..||..-+. ..+.|..|||+.+|+|+.+|.++..+-
T Consensus 34 ~~~~~~~l~~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~L 87 (162)
T 2fa5_A 34 SGNIAKVYGDRYGMAIPEWRVITILAL---YPGSSASEVSDRTAMDKVAVSRAVARL 87 (162)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHH---STTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444555 2599999999887763 358999999999999999998766543
No 115
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=81.58 E-value=1.2 Score=34.45 Aligned_cols=23 Identities=26% Similarity=0.101 Sum_probs=20.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 010338 472 RTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 472 ~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+|+.|||+.+|||+.+|+++++.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 48899999999999999998874
No 116
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=81.47 E-value=2.6 Score=34.77 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=32.8
Q ss_pred HHHHHhcCC-HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 445 LDDVLDSLK-PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 445 L~~aL~~L~-~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+..++..|. +....||..-. ..+.|..|||+.+|+|+.+|++++.+
T Consensus 11 ~~~~~~~l~~~~r~~IL~~L~----~~~~~~~ela~~l~is~~tv~~~l~~ 57 (114)
T 2oqg_A 11 LASVFAALSDETRWEILTELG----RADQSASSLATRLPVSRQAIAKHLNA 57 (114)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----HSCBCHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 444555553 55666666542 35799999999999999999976554
No 117
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=81.40 E-value=19 Score=29.43 Aligned_cols=38 Identities=8% Similarity=0.009 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 365 IQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 365 i~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
+.++...+...+....+.++||+.+|+|+..+....+.
T Consensus 7 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 7 IQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44555556667778899999999999999999888765
No 118
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=81.38 E-value=2.9 Score=36.70 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=39.9
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 440 LLRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 440 ~l~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+...+...+. .|++.|..||..-+. ..+.|..|||+.+|+++.+|.++..+
T Consensus 30 ~~~~~~~~~l~~~glt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 83 (162)
T 3k0l_A 30 IISKYLTEHLSALEISLPQFTALSVLAA---KPNLSNAKLAERSFIKPQSANKILQD 83 (162)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555554 499999999987663 35899999999999999999876554
No 119
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=81.36 E-value=2.3 Score=36.33 Aligned_cols=52 Identities=13% Similarity=0.051 Sum_probs=38.9
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 441 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 441 l~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
+...+...+. .|++.+..||..-+. ..+.|..+||+.+|+|+.+|.++..+-
T Consensus 14 ~~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~~la~~l~~s~~~vs~~l~~L 67 (144)
T 1lj9_A 14 LDSISNIEFKELSLTRGQYLYLVRVCE---NPGIIQEKIAELIKVDRTTAARAIKRL 67 (144)
T ss_dssp HHHHHHHHTGGGTCTTTHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH---CcCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 3444555554 489999999877653 357899999999999999998765543
No 120
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=81.35 E-value=1.2 Score=37.09 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 454 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 454 ~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
+|...|+.+.. ..+.|+.+||+.+|||..||+..+...
T Consensus 7 ~R~~~I~~~l~----~~~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 7 ERTIKIGKYIV----ETKKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHHH----HHCCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHH----HcCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 35555655544 234899999999999999999987653
No 121
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=81.34 E-value=2.1 Score=38.92 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=32.6
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..|++.++.||.+-.. ....|+.|||+.+|+|+.+|++++.+
T Consensus 13 ~~ld~~d~~IL~~L~~---~~~~s~~eLA~~lglS~~tv~~~l~~ 54 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK---DARLTISELSEQLKKPESTIHFRIKK 54 (171)
T ss_dssp -CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4578888888876431 34689999999999999999976544
No 122
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=81.20 E-value=0.83 Score=42.32 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=32.4
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCC--CHHHHHHHhCCC-HHHHHHHHHH
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDR--TLGEIAGNLNIS-REMVRKHEVK 494 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~--Tl~EIA~~LgIS-rerVRqi~~r 494 (513)
..|+++|+.++...--+-...++ |..|+|+.+|+| +++|++++.+
T Consensus 2 ~~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 2 KALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHH
Confidence 35888888876543211112355 999999999999 9999998763
No 123
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=81.10 E-value=2.5 Score=35.95 Aligned_cols=41 Identities=15% Similarity=0.303 Sum_probs=34.2
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.|++.|..||..-+. ..+.|..+||+.+|+|+.+|..+..+
T Consensus 30 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~s~~tvs~~l~~ 70 (145)
T 2a61_A 30 GITPAQFDILQKIYF---EGPKRPGELSVLLGVAKSTVTGLVKR 70 (145)
T ss_dssp TCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHH
Confidence 499999999887663 35799999999999999999876554
No 124
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=80.97 E-value=3.6 Score=35.23 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=32.2
Q ss_pred HHHHhcC-CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 446 DDVLDSL-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 446 ~~aL~~L-~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++..| ++....||.+-. ..+.|..|||+.+|+|+++|++++..
T Consensus 37 ~~~~kaL~~~~rl~IL~~L~----~~~~s~~ela~~lgis~stvs~~L~~ 82 (122)
T 1r1t_A 37 AEFFAVLADPNRLRLLSLLA----RSELCVGDLAQAIGVSESAVSHQLRS 82 (122)
T ss_dssp HHHHHHHCCHHHHHHHHHHT----TCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3333333 555667776554 35799999999999999999976544
No 125
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=80.73 E-value=10 Score=31.31 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 364 EIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 364 ki~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
.+.++...+...+...++.++||+.+|+|...+..+.+.
T Consensus 8 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 8 KLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345555556666778899999999999999999888765
No 126
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=80.70 E-value=3.7 Score=37.44 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 441 LRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 441 l~~~L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+...+...+..|++.|..||..-+-.. .++.|..+||+.+|+|+++|.++..+
T Consensus 28 ~~~~~~~~~~~lt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is~~tvs~~l~~ 80 (189)
T 3nqo_A 28 IQIEGDKYFGILTSRQYMTILSILHLP-EEETTLNNIARKMGTSKQNINRLVAN 80 (189)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344555666679999999998766221 24799999999999999999866544
No 127
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=80.58 E-value=3.8 Score=35.39 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=37.7
Q ss_pred HHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 444 ALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 444 ~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.+...+. .|++.|..||..-+. ..+.|..+||+.+|+|+++|.++..+-
T Consensus 29 ~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 79 (154)
T 2qww_A 29 YADQNAASLGLTIQQLAMINVIYS---TPGISVADLTKRLIITGSSAAANVDGL 79 (154)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444443 499999999887663 357999999999999999998766543
No 128
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=80.57 E-value=2.4 Score=33.95 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 377 KRVPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 377 gR~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
|..||..|||+.+|+|...++..|..
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~ 47 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQ 47 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 88999999999999999999887765
No 129
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=80.42 E-value=2.7 Score=33.68 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
++..|..+||+.||+|+..|.+.+.+
T Consensus 27 ~~~~Ta~~IAkkLg~sK~~vNr~LY~ 52 (75)
T 1sfu_A 27 NDYTTAISLSNRLKINKKKINQQLYK 52 (75)
T ss_dssp TCEECHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHCCCHHHHHHHHHH
Confidence 34589999999999998777765554
No 130
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=80.40 E-value=1.3 Score=36.85 Aligned_cols=43 Identities=35% Similarity=0.260 Sum_probs=31.1
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 010338 452 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR 500 (513)
+.+....||...+- .++..|..|||+.||+|+.+|++ ++++|.
T Consensus 16 ~~~~~l~Il~~l~~--~g~~~s~~eLa~~lgvs~~tV~~----~L~~L~ 58 (110)
T 1q1h_A 16 LGDDVIDVLRILLD--KGTEMTDEEIANQLNIKVNDVRK----KLNLLE 58 (110)
T ss_dssp SCSTTHHHHHHHHH--HCSCBCHHHHHHTTTSCHHHHHH----HHHHHH
T ss_pred cChHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHHH----HHHHHH
Confidence 45666777765531 13468999999999999999995 555554
No 131
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=80.35 E-value=2.5 Score=36.48 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=37.7
Q ss_pred HHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 443 LALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 443 ~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..+...+. .|++.|..||...+. ..+.|..+||+.+|+|+.+|.++..+
T Consensus 24 ~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~ 74 (155)
T 1s3j_A 24 PEMLESMEKQGVTPAQLFVLASLKK---HGSLKVSEIAERMEVKPSAVTLMADR 74 (155)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH---HSEEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34444443 699999999887652 35789999999999999999876544
No 132
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=80.32 E-value=2.5 Score=36.08 Aligned_cols=51 Identities=18% Similarity=0.057 Sum_probs=38.8
Q ss_pred HHHHHHHHHhc--CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 441 LRLALDDVLDS--LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 441 l~~~L~~aL~~--L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+...+...+.. |++.|..||..-+. .++.|..|||+.+|+++.+|.++..+
T Consensus 22 ~~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 22 MHLFLMRSIASYDVTPEQWSVLEGIEA---NEPISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp HHHHHHHHTTTSSSCHHHHHHHHHHHH---HSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCCHhhHHHHHHH
Confidence 34445555543 89999999887653 36899999999999999999866554
No 133
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=80.15 E-value=2 Score=35.25 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=28.4
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 453 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 453 ~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
+|....||..... .+++|..|||+.+|+|+++|++++.
T Consensus 26 ~~~Rl~IL~~l~~---~~~~~~~ela~~l~is~stvs~hL~ 63 (99)
T 2zkz_A 26 HPMRLKIVNELYK---HKALNVTQIIQILKLPQSTVSQHLC 63 (99)
T ss_dssp SHHHHHHHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 5666677733221 2579999999999999999997654
No 134
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=80.05 E-value=2.6 Score=36.88 Aligned_cols=42 Identities=7% Similarity=-0.019 Sum_probs=34.7
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.|++.|..||...+. ..+.|..+||+.+|+|+.+|.+++.+-
T Consensus 49 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~L 90 (162)
T 3cjn_A 49 GLSTAKMRALAILSA---KDGLPIGTLGIFAVVEQSTLSRALDGL 90 (162)
T ss_dssp TCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCChhHHHHHHHHH
Confidence 399999999887663 357899999999999999998766543
No 135
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=79.87 E-value=9 Score=32.43 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=47.8
Q ss_pred CCHHHHHHhcCCCHHHHHHHHHhccCcccccCCCCCchhhhhccccCCCCCCchhhhHHHHHHHHHHHHHhcCCHHHH-H
Q 010338 380 PTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKES-L 458 (513)
Q Consensus 380 PT~eELA~~lgis~e~v~~~l~~~~~~~SLd~~~~~~~~e~~d~l~d~~~~~~ee~~~~~~l~~~L~~aL~~L~~rEr-~ 458 (513)
-+..+||..+|++...|..++...... + .. .. .+. + ..|++.+. .
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~-------g---~~-----~~-~gr-~-----------------~~l~~~~~~~ 68 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSY-------G---TS-----KR-APR-R-----------------KALSVRDERN 68 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGT-------T---CC-----CC-CCC-C-----------------CSSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHccccc-------C---Cc-----CC-CCC-C-----------------CcCCHHHHHH
Confidence 578999999999999999988753211 0 00 00 000 0 01222222 2
Q ss_pred HHhHHhcCCCCCCCCHHHHHHHhC--CCHHHHHHHHHH
Q 010338 459 VIRQRFGLDGKGDRTLGEIAGNLN--ISREMVRKHEVK 494 (513)
Q Consensus 459 VL~lRyGL~~~~~~Tl~EIA~~Lg--ISrerVRqi~~r 494 (513)
|+.+.- ...+|..+|+..|| +|.++|++++.+
T Consensus 69 i~~~~~----~~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 69 VIRAAS----NSCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp HHHHHH----HCCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHHHh----CCCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 222211 23589999999999 899999999875
No 136
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=79.80 E-value=13 Score=30.44 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhC-CCCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 365 IQRAKLELLFELK-RVPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 365 i~ka~~~L~~elg-R~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
+.++...+...+. ..++.++||+.+|+|...+..+.+.
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4555566666777 7899999999999999999888764
No 137
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=79.66 E-value=4.7 Score=34.73 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 440 LLRLALDDVLDS--LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 440 ~l~~~L~~aL~~--L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+...+...+.. |++.|-.||..-+- ...+.|..|||+.+|+++.+|.++..+
T Consensus 23 ~~~~~~~~~l~~~glt~~q~~vL~~l~~--~~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 23 MVLGAVNKALVPTGLRVRSYSVLVLACE--QAEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHHHH--STTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHh--CCCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 344455555543 89999999886542 134689999999999999999866544
No 138
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=79.53 E-value=3 Score=36.99 Aligned_cols=50 Identities=8% Similarity=0.015 Sum_probs=38.3
Q ss_pred HHHHHHHHh----cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 442 RLALDDVLD----SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 442 ~~~L~~aL~----~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
...+...+. .|++.|..||..-+. ..+.|..|||+.+|+|..+|.++..+
T Consensus 29 ~~~~~~~l~~~~~~lt~~~~~iL~~L~~---~~~~t~~eLa~~l~is~~tvs~~l~~ 82 (168)
T 2nyx_A 29 VAISAHSIAQVDENITIPQFRTLVILSN---HGPINLATLATLLGVQPSATGRMVDR 82 (168)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHH---HCSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHH---cCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 334444444 699999999887653 35799999999999999999976644
No 139
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=79.52 E-value=1.6 Score=35.46 Aligned_cols=45 Identities=20% Similarity=0.082 Sum_probs=33.7
Q ss_pred cCCHHHHHHHhHHhcCC-CCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLD-GKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~-~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.|+.++..||...+... ++...|..|||+.+|+++++|.++..+-
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 54 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKF 54 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 47888888887665321 2234899999999999999999776543
No 140
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=79.37 E-value=2.6 Score=36.14 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=34.4
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.|++.|..||..-+. ..+.|..|||+.+|+|+++|.++..+-
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~L 78 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS---ASDCSVQKISDILGLDKAAVSRTVKKL 78 (148)
T ss_dssp TCCHHHHHHHHHHHH---SSSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 488899888877653 358999999999999999999766553
No 141
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=79.25 E-value=3 Score=38.83 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=32.4
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+++.+..||.+-. ..+.|..|||+.+|+|.++|++++.+
T Consensus 18 ~d~~~~~IL~~L~----~~~~s~~eLA~~lglS~stv~~~l~~ 56 (192)
T 1uly_A 18 LEDTRRKILKLLR----NKEMTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp HSHHHHHHHHHHT----TCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5788888887765 24799999999999999999977654
No 142
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=79.12 E-value=2.2 Score=35.65 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHHHHhcCC-HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 445 LDDVLDSLK-PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 445 L~~aL~~L~-~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+..++..|. +....||.+-. ..+.|..|||+.+|+|+++|++.+..
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~----~~~~s~~eLa~~lgis~stvs~~L~~ 61 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLA----QGERAVEAIATATGMNLTTASANLQA 61 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHT----TCCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 334444443 33455665543 35789999999999999999876543
No 143
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=78.92 E-value=2 Score=36.25 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=38.9
Q ss_pred HHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 442 RLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 442 ~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
...+...+. .|++.|..||..-+. ..+.|..+||+.+|+|+.+|.++..+-
T Consensus 19 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3bja_A 19 QKNLDKAIEQYDISYVQFGVIQVLAK---SGKVSMSKLIENMGCVPSNMTTMIQRM 71 (139)
T ss_dssp HHHHHHHTGGGTCCHHHHHHHHHHHH---SCSEEHHHHHHHCSSCCTTHHHHHHHH
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhHHHHHHHHH
Confidence 344445554 489999999887663 357999999999999999998766543
No 144
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=78.82 E-value=2.4 Score=45.06 Aligned_cols=118 Identities=12% Similarity=0.049 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHhccCcccccCCCCCchhhhhccccCCCCCCchhhhHHHHHHHHH
Q 010338 366 QRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPALLRLAL 445 (513)
Q Consensus 366 ~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLd~~~~~~~~e~~d~l~d~~~~~~ee~~~~~~l~~~L 445 (513)
.+....|.. +..-|..+||+.+|+|..+++..+..-+..+.-.......+..+ .+...+ ..... .+
T Consensus 21 ~~IL~~L~~--~~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~~~Gy--~L~~~~----~~~~~------~~ 86 (485)
T 3sqn_A 21 IRLLEQLLN--VPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGI--RLRNQG----NAQTN------EL 86 (485)
T ss_dssp HHHHHHHHH--CCSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEETTEE--EEEEC-------CTH------HH
T ss_pred HHHHHHHHh--CCCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEcCCEE--EEecCc----HHHHH------HH
Confidence 334444543 44578999999999999999987765443321000000000000 000000 00010 01
Q ss_pred HHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 446 DDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 446 ~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
...+++.+|....+.+-|. .+..|+.++|+.|.||++||.+-+.+..+.|.+
T Consensus 87 ---~~~~~~~eR~~~Il~~LL~-~~~isi~~Lae~l~VS~sTi~~DLk~i~~~L~~ 138 (485)
T 3sqn_A 87 ---WSLFLPQSISIQLLKELLF-TKELVTTSFLSTSGVSYETLKRHIKKMNQALRD 138 (485)
T ss_dssp ---HHHHGGGSHHHHHHHHHHH-CSEEEHHHHHHHHTCCHHHHHHHHHHHHHHHGG
T ss_pred ---HHhcCHHHHHHHHHHHHHh-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 1223444454444433333 348899999999999999999999988888865
No 145
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=78.79 E-value=6.1 Score=34.55 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=37.5
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCC--CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 441 LRLALDDVLD--SLKPKESLVIRQRFGLDG--KGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 441 l~~~L~~aL~--~L~~rEr~VL~lRyGL~~--~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
+...++..|. .|++.|-.||..-+..++ ..++|..|||+.+++++.+|.++..+=
T Consensus 18 ~~~~~~~~l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~L 76 (148)
T 4fx0_A 18 LGQAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVM 76 (148)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 3344556664 389999999877664332 246899999999999999999776653
No 146
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=78.71 E-value=3.7 Score=32.19 Aligned_cols=41 Identities=7% Similarity=-0.034 Sum_probs=32.6
Q ss_pred cCCHHHHHHHhHHhcCCCC-CCCCHHHHHHHh-----CCCHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGK-GDRTLGEIAGNL-----NISREMVRKHEV 493 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~-~~~Tl~EIA~~L-----gISrerVRqi~~ 493 (513)
.++++...||.+-..- . .+.|..||++.+ ++|..||++.+.
T Consensus 14 ~~t~~r~~IL~~l~~~--~~~~~s~~el~~~l~~~~~~is~~TVyR~L~ 60 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEP--DNHHVSAEDLYKRLIDMGEEIGLATVYRVLN 60 (83)
T ss_dssp CCCHHHHHHHHHHTSG--GGSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhC--CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHH
Confidence 4888888888776521 2 479999999999 999999986554
No 147
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=78.51 E-value=2.7 Score=34.07 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=27.9
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 453 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 453 ~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
++....||.+.. .++|..|||+.+|+|+.+|++++.
T Consensus 30 ~~~r~~Il~~L~-----~~~~~~eLa~~l~is~~tv~~~L~ 65 (96)
T 1y0u_A 30 NPVRRKILRMLD-----KGRSEEEIMQTLSLSKKQLDYHLK 65 (96)
T ss_dssp CHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 556666666541 469999999999999999997654
No 148
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=78.14 E-value=3.4 Score=36.11 Aligned_cols=53 Identities=6% Similarity=0.090 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 440 LLRLALDDVLDS--LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 440 ~l~~~L~~aL~~--L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.+...+...+.. |++.|..||..-+. ..+.|..|||+.+|+++.+|.++..+-
T Consensus 34 ~~~~~~~~~l~~~~lt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 88 (159)
T 3s2w_A 34 YGQIYIGKKIEPYGIGSGQFPFLMRLYR---EDGINQESLSDYLKIDKGTTARAIQKL 88 (159)
T ss_dssp HHHHHHHHHHGGGTCCTTTHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455556644 99999999887653 467999999999999999998766553
No 149
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=78.05 E-value=5.3 Score=34.16 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=31.8
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.-+++.+-.-++... ++|.+++|+.+|+|+.+|++++.-
T Consensus 69 ~~~~~~~l~~~R~~~------glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 69 ETVAPEFIVKVRKKL------SLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TTCCHHHHHHHHHHT------TCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred cCCCHHHHHHHHHHc------CCCHHHHHHHHCCCHHHHHHHHCC
Confidence 346777666666666 689999999999999999999974
No 150
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=77.95 E-value=2.4 Score=33.35 Aligned_cols=26 Identities=15% Similarity=-0.013 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|..++|+.+|||+.+|+++++.
T Consensus 29 ~~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 29 NSGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999999864
No 151
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=77.50 E-value=2.1 Score=33.41 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|..++|+.+|||+.+|+++++.
T Consensus 21 ~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 21 EKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999999864
No 152
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=77.20 E-value=3.3 Score=35.81 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=37.7
Q ss_pred HHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 443 LALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 443 ~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
..+...+. .|++.|..||..-. .++.|..|||+.+|+|+++|.++..+-
T Consensus 25 ~~~~~~~~~~~lt~~q~~iL~~l~----~~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (151)
T 3kp7_A 25 KLLKDLQTEYGISAEQSHVLNMLS----IEALTVGQITEKQGVNKAAVSRRVKKL 75 (151)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH----HSCBCHHHHHHHHCSCSSHHHHHHHHH
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHH----cCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444443 49999999987762 578999999999999999999765543
No 153
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=76.95 E-value=2 Score=31.43 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|+|+.+|+++++.
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5789999999999999999999863
No 154
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=76.87 E-value=5.6 Score=33.91 Aligned_cols=41 Identities=7% Similarity=0.034 Sum_probs=33.7
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.|++.|-.||..-+. ..+ |..+||+.+|+|+++|.++..+-
T Consensus 34 ~lt~~~~~iL~~l~~---~~~-~~~~la~~l~~~~~tvs~~l~~L 74 (144)
T 3f3x_A 34 NLSYLDFSILKATSE---EPR-SMVYLANRYFVTQSAITAAVDKL 74 (144)
T ss_dssp SCCHHHHHHHHHHHH---SCE-EHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCC-CHHHHHHHHCCChhHHHHHHHHH
Confidence 689999999987763 234 99999999999999998766543
No 155
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=76.78 E-value=2.3 Score=31.67 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++.
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4789999999999999999999864
No 156
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=76.75 E-value=2.4 Score=32.70 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=28.8
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+++.+-.-++... ++|.+|+|+.+|||+.+|++++.-
T Consensus 11 ~~g~~lr~~R~~~------gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 11 VAPEFIVKVRKKL------SLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp CCHHHHHHHHHHT------TCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred CCHHHHHHHHHHc------CCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4555544455555 689999999999999999999864
No 157
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=76.71 E-value=2.6 Score=33.04 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=34.5
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHH
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN----ISREMVRKHEVK 494 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~Lg----ISrerVRqi~~r 494 (513)
..|++.|..||..-+. .++.|..||++.|+ ++..+|..++.+
T Consensus 5 ~~lt~~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~r 50 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK---HSSINTNEVIKELSKTSTWSPKTIQTMLLR 50 (82)
T ss_dssp CCCCHHHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---CCCCCHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 4689999999987763 35799999999997 799999876654
No 158
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=76.70 E-value=2.4 Score=31.44 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++.
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5789999999999999999998864
No 159
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.31 E-value=2.3 Score=36.01 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=34.4
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.|++.|..||..-+. ..+.|..+||+.+|+|+.+|.++..+-
T Consensus 33 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~~vs~~l~~L 74 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQ---QGEMESYQLANQACILRPSMTGVLARL 74 (142)
T ss_dssp TCCHHHHHHHHHHHH---HCSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHhHHHHHHHHH
Confidence 489999999887663 357899999999999999998766543
No 160
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=76.24 E-value=1.6 Score=35.20 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=27.3
Q ss_pred HHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHH-HHHHHHHH
Q 010338 455 KESLVIRQRFGLDGKGDRTLGEIAGNLNISRE-MVRKHEVK 494 (513)
Q Consensus 455 rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISre-rVRqi~~r 494 (513)
....||.+-.- ..+.|..+||+.||||.. .||+.+..
T Consensus 12 ~~~~IL~~Lk~---~g~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 12 IKEKICDYLFN---VSDSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp HHHHHHHHHHH---TCCEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHH---cCCcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 34445544332 458999999999999999 99987654
No 161
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=76.06 E-value=3.8 Score=35.93 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=38.9
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 441 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 441 l~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
+...+...+. .|++.|..||..-+. .++.|..|||+.+|+++.+|.++..+-
T Consensus 38 ~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~L 91 (161)
T 3e6m_A 38 WSSELNQALASEKLPTPKLRLLSSLSA---YGELTVGQLATLGVMEQSTTSRTVDQL 91 (161)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444443 499999999887653 358999999999999999998766553
No 162
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=75.87 E-value=2.4 Score=35.83 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=32.4
Q ss_pred HHHHHhcC-CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 445 LDDVLDSL-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 445 L~~aL~~L-~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
+..++..| +|.-..||.+-. ..+.|..|||+.+|+|..+|++++.
T Consensus 8 ~~~~~~al~~~~R~~Il~~L~----~~~~~~~eLa~~l~is~~tvs~hL~ 53 (118)
T 3f6o_A 8 LNGIFQALADPTRRAVLGRLS----RGPATVSELAKPFDMALPSFMKHIH 53 (118)
T ss_dssp HHHHHHHHTSHHHHHHHHHHH----TCCEEHHHHHTTCCSCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH----hCCCCHHHHHHHhCcCHHHHHHHHH
Confidence 34444444 455566666555 3578999999999999999996644
No 163
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=75.55 E-value=1.9 Score=34.47 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+.|..|||+.||||..+|+..+..
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~ 47 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQ 47 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 4789999999999999999976643
No 164
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=75.50 E-value=1.9 Score=33.60 Aligned_cols=25 Identities=8% Similarity=0.019 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++.
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 3689999999999999999999863
No 165
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=75.41 E-value=2.7 Score=31.59 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++.
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4789999999999999999999864
No 166
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=75.29 E-value=7.7 Score=34.04 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=38.5
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 441 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 441 l~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+..+...|. .|++.|-.||..-+.. ..+.+..|||+.+|+++++|.++..+
T Consensus 16 ~~~~~~~~l~~~gLt~~q~~vL~~L~~~--~~~~~~~eLa~~l~~~~~tvs~~v~~ 69 (151)
T 4aik_A 16 WRALIDHRLKPLELTQTHWVTLYNINRL--PPEQSQIQLAKAIGIEQPSLVRTLDQ 69 (151)
T ss_dssp HHHHHHHHTGGGCCCHHHHHHHHHHHHS--CTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHc--CCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4445566664 3899998888765421 35688899999999999999876654
No 167
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=75.21 E-value=3.1 Score=31.67 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+++|+++++.
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5789999999999999999999864
No 168
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=75.19 E-value=2.5 Score=33.51 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|..|+|+.+|||+.+|+++++-
T Consensus 25 ~~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 25 DAGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 35789999999999999999999863
No 169
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=75.17 E-value=3.4 Score=35.17 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=31.4
Q ss_pred cCCHHHH-HHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010338 451 SLKPKES-LVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMK 498 (513)
Q Consensus 451 ~L~~rEr-~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkK 498 (513)
.+++.++ +|+.+.+- ....+..+||+.||||+++|+.+....-..
T Consensus 7 ~~t~e~K~~iv~~~~~---~g~~~~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEE---NPDLRKGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CCCHHHHHHHHHHHHH---CTTSCHHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred eCCHHHHHHHHHHHHH---CCCCcHHHHHHHhCCCHHHHHHHHhchhhh
Confidence 4677776 45555531 223455699999999999999998765443
No 170
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=75.12 E-value=2.7 Score=31.90 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|++++..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 4789999999999999999999863
No 171
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=74.83 E-value=3 Score=36.23 Aligned_cols=42 Identities=19% Similarity=0.076 Sum_probs=33.9
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.|++.|..||..-+. ..+.|..+||+.+|+|+.+|.++..+-
T Consensus 41 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~L 82 (154)
T 2eth_A 41 DMKTTELYAFLYVAL---FGPKKMKEIAEFLSTTKSNVTNVVDSL 82 (154)
T ss_dssp HSBHHHHHHHHHHHH---HCCBCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 388999988877652 347999999999999999998766543
No 172
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=74.54 E-value=2.2 Score=31.48 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++.
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 4689999999999999999999864
No 173
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=74.51 E-value=3.7 Score=30.35 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHh-----CCCHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNL-----NISREMVRKHEV 493 (513)
Q Consensus 469 ~~~~Tl~EIA~~L-----gISrerVRqi~~ 493 (513)
....|.+||++.| +||..||++.+.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 4579999999999 999999998877
No 174
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=74.45 E-value=4 Score=34.78 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=29.5
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 453 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 453 ~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
++....||.+-.. ..++|..|||+.+|+|+++|++++..
T Consensus 41 ~~~rl~IL~~L~~---~~~~s~~eLa~~l~is~stvs~~L~~ 79 (122)
T 1u2w_A 41 DENRAKITYALCQ---DEELCVCDIANILGVTIANASHHLRT 79 (122)
T ss_dssp SHHHHHHHHHHHH---SSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 5556667665441 25799999999999999999977654
No 175
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=74.45 E-value=2.8 Score=35.73 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=33.9
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.|++.|..||..-+. ..+.|..+||+.+|+|+.+|++...+
T Consensus 34 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~ 74 (142)
T 2bv6_A 34 NLTYPQFLVLTILWD---ESPVNVKKVVTELALDTGTVSPLLKR 74 (142)
T ss_dssp TCCHHHHHHHHHHHH---SSEEEHHHHHHHTTCCTTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 499999999887663 34689999999999999999876544
No 176
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=74.41 E-value=2.7 Score=34.14 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|..|+|+.+|||+.+|++++.-
T Consensus 35 ~~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 35 DRDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999999875
No 177
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=74.41 E-value=2.2 Score=32.46 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++.
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3689999999999999999999864
No 178
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=74.38 E-value=2.1 Score=33.26 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..|+|+.+|||+.+|+++++.
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4789999999999999999999863
No 179
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=74.36 E-value=4.2 Score=34.55 Aligned_cols=50 Identities=18% Similarity=0.041 Sum_probs=37.6
Q ss_pred HHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 444 ALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 444 ~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+...+. .|++.|-.||..-+.- +..+.|..|||+.+|+++.+|.++..+
T Consensus 25 ~~~~~~~~~~lt~~q~~vL~~l~~~-~~~~~t~~eLa~~l~~~~~tvs~~l~~ 76 (127)
T 2frh_A 25 LKSLIKKEFSISFEEFAVLTYISEN-KEKEYYLKDIINHLNYKQPQVVKAVKI 76 (127)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHT-CCSEEEHHHHHHHSSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhc-cCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444554 4999999999877631 125789999999999999999866544
No 180
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=74.19 E-value=2.1 Score=32.90 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+++|+++++.
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4789999999999999999999863
No 181
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=74.18 E-value=3.5 Score=32.22 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++.
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4789999999999999999999874
No 182
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=74.17 E-value=2.7 Score=35.21 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|++|+|+.+|||+.+|+++++-
T Consensus 47 ~~glTQ~eLA~~~gvs~~~is~~E~G 72 (101)
T 4ghj_A 47 NRDLTQSEVAEIAGIARKTVLNAEKG 72 (101)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHcCCCHHHHHHHHCC
Confidence 46899999999999999999999963
No 183
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=74.07 E-value=2.5 Score=33.21 Aligned_cols=25 Identities=4% Similarity=0.098 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|+.++|+.+|||+++|++++.+
T Consensus 21 ~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 21 RKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999988653
No 184
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=73.89 E-value=4.3 Score=32.22 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|..++|+.+|||+.+|+++++.
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999999873
No 185
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=73.77 E-value=3 Score=32.34 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++-
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 5789999999999999999999864
No 186
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=73.48 E-value=4.1 Score=40.78 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=38.9
Q ss_pred HhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010338 449 LDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 496 (513)
Q Consensus 449 L~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rAL 496 (513)
|+.||+.-+++-.+|.- ..+.|++|+|+.++||.+.|.-++.|-.
T Consensus 241 l~~Lp~~L~e~a~lRl~---~pdaSL~ELge~l~isKSgVnhRlrKL~ 285 (295)
T 3hyi_A 241 LENLPEDLRRVALVRLR---NKELSLRELGKKLNLTKSQIYSKLKRII 285 (295)
T ss_dssp GGGSCHHHHHHHHHHHH---CTTSCHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH---CccccHHHHHHHhCcCHHHHHHHHHHHH
Confidence 47899999999988884 5789999999999999999988776643
No 187
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=72.77 E-value=2.7 Score=33.98 Aligned_cols=42 Identities=7% Similarity=0.036 Sum_probs=33.0
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHH----HHHhCCCHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEI----AGNLNISREMVRKHEVKG 495 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EI----A~~LgISrerVRqi~~rA 495 (513)
.|++.|..||..-+. ..+.|..|| |+.+|+|+.+|.+++.+=
T Consensus 5 ~lt~~q~~iL~~l~~---~~~~~~~el~~~la~~l~is~~tvs~~l~~L 50 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYD---NEGIATYDLYKKVNAEFPMSTATFYDAKKFL 50 (99)
T ss_dssp SSBCHHHHHHHHHTT---CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 377888888877652 357999999 899999999998766543
No 188
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=72.75 E-value=4.1 Score=30.39 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhC--CCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLN--ISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~Lg--ISrerVRqi~~r 494 (513)
.++|.+++|+.+| +|+.+|+++++.
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 5789999999999 999999999874
No 189
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=72.53 E-value=22 Score=29.69 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 366 QRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 366 ~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
.++...+...+....+.++||+.+|+|...+....+.
T Consensus 10 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 10 TRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3444445555677899999999999999988877654
No 190
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=72.37 E-value=3.9 Score=32.81 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|..++|+.+|||+.+|++++..
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 45789999999999999999999864
No 191
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=72.35 E-value=7.2 Score=34.55 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=39.3
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 440 LLRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 440 ~l~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+...+...+. .|++.|..||..-+.. ..+.|..|||+.+|+++.+|.++..+
T Consensus 37 ~~~~~~~~~l~~~glt~~q~~vL~~L~~~--~~~~t~~eLa~~l~i~~~tvs~~l~~ 91 (166)
T 3deu_A 37 IWRALIDHRLKPLELTQTHWVTLHNIHQL--PPDQSQIQLAKAIGIEQPSLVRTLDQ 91 (166)
T ss_dssp HHHHHHHHHTTTTTCCHHHHHHHHHHHHS--CSSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHhhHHHHHHH
Confidence 34445555554 3899999998876532 24699999999999999999976554
No 192
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=72.20 E-value=36 Score=27.29 Aligned_cols=36 Identities=8% Similarity=-0.072 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCC-CCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 367 RAKLELLFELKR-VPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 367 ka~~~L~~elgR-~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
++...+...+.. .++.++||+.+|+|+..+....+.
T Consensus 6 ~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 6 LIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 334445555665 789999999999999999888765
No 193
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=71.97 E-value=2.6 Score=31.81 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|++++..
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3689999999999999999999863
No 194
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=71.81 E-value=3.6 Score=31.78 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4789999999999999999999863
No 195
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=71.63 E-value=2.1 Score=35.40 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=22.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 010338 472 RTLGEIAGNLNISREMVRKHEVKGL 496 (513)
Q Consensus 472 ~Tl~EIA~~LgISrerVRqi~~rAL 496 (513)
.|+.+||..+|||.++|+++..+..
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7999999999999999999988754
No 196
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=71.45 E-value=58 Score=29.61 Aligned_cols=121 Identities=21% Similarity=0.184 Sum_probs=60.5
Q ss_pred hCCCCCHHHHHHhcCCCHHHHHHHHHhccCcccccCCCC-CchhhhhccccCCCCCCchhhhHHHHHHHHHHHHHhc---
Q 010338 376 LKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHG-VTQEEFINGITDVDGVENENQRQPALLRLALDDVLDS--- 451 (513)
Q Consensus 376 lgR~PT~eELA~~lgis~e~v~~~l~~~~~~~SLd~~~~-~~~~e~~d~l~d~~~~~~ee~~~~~~l~~~L~~aL~~--- 451 (513)
.|-+.+..||+..++++..++....+.-...+.++.+.. .+...++..+...-+.+ ++ + ...-...++.++..
T Consensus 66 ~~~p~~l~di~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~-~~-v-~~~A~~i~~~~~~~~~~ 142 (200)
T 1ais_B 66 LKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLS-EK-V-RRRAIEILDEAYKRGLT 142 (200)
T ss_dssp HTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCC-HH-H-HHHHHHHHHHHHHTTCC
T ss_pred cCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCC-HH-H-HHHHHHHHHHHHHcCcc
Confidence 355678899999999998888766543222222222110 11112211111110111 11 1 11222233333321
Q ss_pred --CCHHHHH--HHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 010338 452 --LKPKESL--VIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500 (513)
Q Consensus 452 --L~~rEr~--VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR 500 (513)
-+|.--. .|.+---+. +.+.|++||+...|+|..+|++....-.+.|.
T Consensus 143 ~gr~P~~iAaAaly~A~~~~-~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 143 SGKSPAGLVAAALYIASLLE-GEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp TTSCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHh-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 2333222 122211111 35789999999999999999988776666654
No 197
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=71.41 E-value=4.1 Score=34.75 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=32.8
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
|++.+..||..-+.- ..+.|..+||+.+|+|+.+|.++..+-
T Consensus 33 l~~~~~~iL~~l~~~--~~~~~~~~la~~l~i~~~~vs~~l~~L 74 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRL--GGDVTPSELAAAERMRSSNLAALLREL 74 (147)
T ss_dssp HHHHHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--CCCCCHHHHHHHhCCChhhHHHHHHHH
Confidence 678888888776521 257899999999999999998766543
No 198
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=71.28 E-value=3 Score=33.31 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=29.2
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 453 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 453 ~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
++....||..-+. .++.|..|||+.+|+|..+|.+++.+
T Consensus 15 ~~~~~~iL~~L~~---~~~~~~~ela~~l~is~~tvs~~l~~ 53 (100)
T 1ub9_A 15 NPVRLGIMIFLLP---RRKAPFSQIQKVLDLTPGNLDSHIRV 53 (100)
T ss_dssp SHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh---cCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 5566667665431 24799999999999999999976554
No 199
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=70.83 E-value=5 Score=34.05 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|++|+|+.+|||+.+|++++.-
T Consensus 18 ~~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 18 ERRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp TTTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 56899999999999999999999975
No 200
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=70.70 E-value=3.5 Score=31.16 Aligned_cols=25 Identities=16% Similarity=0.128 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|++++..
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999863
No 201
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=70.55 E-value=4.1 Score=34.45 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=29.8
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 453 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 453 ~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
.+....||.+-. ..+.|..|||+.+|+|+++|++++ ++|+.
T Consensus 20 ~~~r~~IL~~L~----~~~~~~~eLa~~lgis~stvs~~L----~~L~~ 60 (118)
T 2jsc_A 20 DPTRCRILVALL----DGVCYPGQLAAHLGLTRSNVSNHL----SCLRG 60 (118)
T ss_dssp SHHHHHHHHHHH----TTCCSTTTHHHHHSSCHHHHHHHH----HHHTT
T ss_pred CHHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHH----HHHHH
Confidence 355566776544 246899999999999999998654 45554
No 202
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=70.45 E-value=5.5 Score=31.82 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
....|..|||+.||||..+||.-+..
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 35789999999999999999987654
No 203
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=70.30 E-value=3.4 Score=35.53 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=29.2
Q ss_pred CCHHHHHHHhHHhcC-CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGL-DGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 452 L~~rEr~VL~lRyGL-~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
|++.+..+|...+-+ ....+.|..+||+.||+|+.+|++++.+
T Consensus 2 ls~~~~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~ 45 (142)
T 1on2_A 2 TTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQK 45 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 455555555444322 1125799999999999999999976544
No 204
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=70.24 E-value=6.2 Score=38.14 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=35.2
Q ss_pred HHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 448 VLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 448 aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
....|++.+..||..-.. ..+.|+.|||+.+|+|+++|.+++.+
T Consensus 146 ~~~~L~~~~~~IL~~L~~---~~~~s~~eLA~~lglsksTv~r~L~~ 189 (244)
T 2wte_A 146 LMRDYSREEMKLLNVLYE---TKGTGITELAKMLDKSEKTLINKIAE 189 (244)
T ss_dssp HHSCCCHHHHHHHHHHHH---HTCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 445799999999987431 35799999999999999999866543
No 205
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=69.76 E-value=3.7 Score=33.38 Aligned_cols=25 Identities=20% Similarity=0.132 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|.+++|+.+|||+.+|+++++.
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~G 66 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQG 66 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4789999999999999999999863
No 206
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=69.74 E-value=21 Score=30.25 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 364 EIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 364 ki~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
.+.++...+...+...++.++||+.+|+|...+..+.+.
T Consensus 12 ~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 12 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345555556666777899999999999999999888765
No 207
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=69.62 E-value=8.4 Score=35.77 Aligned_cols=48 Identities=15% Similarity=0.103 Sum_probs=37.1
Q ss_pred HHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 444 ALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 444 ~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+...+. .|++.|..||..-+. ..+.|..+||+.+|+++.+|.+++.+
T Consensus 36 ~~~~~l~~~gLt~~q~~iL~~L~~---~~~~t~~eLa~~l~i~~stvs~~l~~ 85 (207)
T 2fxa_A 36 DWQQWLKPYDLNINEHHILWIAYQ---LNGASISEIAKFGVMHVSTAFNFSKK 85 (207)
T ss_dssp HHHHHTGGGTCCHHHHHHHHHHHH---HTSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444443 489999999887653 35799999999999999999876654
No 208
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=69.56 E-value=3.6 Score=35.36 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=32.1
Q ss_pred HHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 443 LALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 443 ~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..+...+. .|++.|-.||..-+.- +..+.|..|||+.+|+++.+|.++..+
T Consensus 28 ~~~~~~~~~~glt~~q~~vL~~l~~~-~~~~~t~~eLa~~l~~~~~~vs~~l~~ 80 (148)
T 3jw4_A 28 TSADARLAELGLNSQQGRMIGYIYEN-QESGIIQKDLAQFFGRRGASITSMLQG 80 (148)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH-TTTCCCHHHHHHC------CHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhC-CCCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 34444443 4999999998876631 126899999999999999999866554
No 209
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=69.56 E-value=4.7 Score=36.15 Aligned_cols=55 Identities=11% Similarity=0.020 Sum_probs=39.6
Q ss_pred HHHHHHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 441 LRLALDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 441 l~~~L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
+...+...+. .|++.|..||..-+.-++..+.|..|||+.+|+|+.+|.+++.+=
T Consensus 54 ~~~~~~~~l~~~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~L 110 (181)
T 2fbk_A 54 LGREIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRL 110 (181)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344555554 489999999988763221124899999999999999998766543
No 210
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=69.55 E-value=3.3 Score=34.05 Aligned_cols=44 Identities=11% Similarity=-0.022 Sum_probs=34.1
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..|++.|..|+...+-.+ ..+.+.+|||+.+|++..+|..++.+
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g-~~gi~qkeLa~~~~l~~~tvt~iLk~ 59 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAG-NKGIWSRDVRYKSNLPLTEINKILKN 59 (91)
T ss_dssp CCSCSSHHHHHHHHHHHC-TTCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcC-CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 468888888888877321 35899999999999999998855543
No 211
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=69.35 E-value=6.3 Score=34.15 Aligned_cols=52 Identities=15% Similarity=0.065 Sum_probs=39.0
Q ss_pred HHHHHHHHh---cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 442 RLALDDVLD---SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 442 ~~~L~~aL~---~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
...+...+. .|++.|..||..-+.- ..+.|..+||+.+|+++.+|.++..+=
T Consensus 32 ~~~~~~~l~~~~~l~~~~~~iL~~L~~~--~~~~~~~ela~~l~i~~~tvs~~l~~L 86 (160)
T 3boq_A 32 FGDLNRQLLDETGLSLAKFDAMAQLARN--PDGLSMGKLSGALKVTNGNVSGLVNRL 86 (160)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHC--TTCEEHHHHHHHCSSCCSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCCChhhHHHHHHHH
Confidence 334444443 5999999998887421 357999999999999999998766543
No 212
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=68.64 E-value=4.1 Score=31.52 Aligned_cols=23 Identities=9% Similarity=0.361 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+ |..++|+.+|||+.+|+++++.
T Consensus 12 g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 12 G-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp S-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred C-CHHHHHHHHCCCHHHHHHHHHC
Confidence 6 9999999999999999999975
No 213
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=68.49 E-value=2.2 Score=33.01 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 010338 471 DRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
..|+.|||+..|||+.+|+.+++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 46999999999999999998764
No 214
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=68.45 E-value=4.4 Score=33.31 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|.+++|+.+|||+.+|+++++.
T Consensus 40 ~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5789999999999999999999864
No 215
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=68.12 E-value=4.3 Score=34.82 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|..|+|+.+|||+.+|+++++.
T Consensus 51 ~~glTQ~eLA~~lGis~~~Is~iE~G 76 (120)
T 2o38_A 51 RARLSQAAAAARLGINQPKVSALRNY 76 (120)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45799999999999999999999863
No 216
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=67.70 E-value=4.3 Score=31.96 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=20.0
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 010338 473 TLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 473 Tl~EIA~~LgISrerVRqi~~r 494 (513)
+..++|+.||||+.+|++++..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 5999999999999999999753
No 217
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=67.65 E-value=9 Score=31.86 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=22.7
Q ss_pred CC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 471 DR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 471 ~~-Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
.+ |..+||+.||||+.+|| +|+++|..
T Consensus 42 ~lps~~eLa~~lgVSr~tVr----~al~~L~~ 69 (102)
T 2b0l_A 42 GLLVASKIADRVGITRSVIV----NALRKLES 69 (102)
T ss_dssp EEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 45 99999999999999999 56777764
No 218
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=67.51 E-value=5.7 Score=36.06 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
.++|+.+||+.||+|+++|++++.
T Consensus 157 ~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 157 QGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHh
Confidence 578999999999999999998764
No 219
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=67.20 E-value=4.4 Score=34.59 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=37.4
Q ss_pred HHHHHh--cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010338 445 LDDVLD--SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLM 497 (513)
Q Consensus 445 L~~aL~--~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALk 497 (513)
+...+. .|++.|..||..-+. ..+.|..+||+.+|+|+.+|.++..+-.+
T Consensus 29 ~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 80 (147)
T 1z91_A 29 YKPLLDKLNITYPQYLALLLLWE---HETLTVKKMGEQLYLDSGTLTPMLKRMEQ 80 (147)
T ss_dssp SHHHHTTTCCCHHHHHHHHHHHH---HSEEEHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCcCcHHHHHHHHHH
Confidence 344443 389988888877652 24789999999999999999977655443
No 220
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=67.08 E-value=5.4 Score=33.27 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
..++|..++|+.+|||+.+|+++++
T Consensus 25 ~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4578999999999999999999986
No 221
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=67.04 E-value=5.6 Score=35.05 Aligned_cols=55 Identities=9% Similarity=0.047 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 440 LLRLALDDVLDS--LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 440 ~l~~~L~~aL~~--L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.+...+...+.. |++.|-.||..-+..+ ..+.|..|||+.+|+++.+|.++..+=
T Consensus 30 ~~~~~~~~~~~~~glt~~q~~vL~~l~~~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L 86 (168)
T 3u2r_A 30 RMKAIEEEIFSQFELSAQQYNTLRLLRSVH-PEGMATLQIADRLISRAPDITRLIDRL 86 (168)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TSCEEHHHHHHHC---CTHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHhcC-CCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 344455555543 8999999988766321 258999999999999999998766543
No 222
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=67.00 E-value=7.1 Score=36.57 Aligned_cols=48 Identities=15% Similarity=0.069 Sum_probs=33.9
Q ss_pred HHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 447 DVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 447 ~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
....-||+.|+-.=..++ |+.+...+.+++|+.+|||+..|++.+.-|
T Consensus 19 N~~rplS~yErg~~y~r~-L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 19 SHYRPTSAYERGQRYASR-LQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp ----CCCHHHHHHHHHHH-HHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHH-HhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 344457888887766666 444567899999999999988887665544
No 223
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=66.95 E-value=3.3 Score=34.65 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=35.7
Q ss_pred HhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHHHH
Q 010338 449 LDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN----ISREMVRKHEVKGL 496 (513)
Q Consensus 449 L~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~Lg----ISrerVRqi~~rAL 496 (513)
+..|++.|..||..-+- ..+.|..|||+.++ +|+.+|.+++.+=.
T Consensus 5 ~~~lt~~~~~vL~~l~~---~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~ 53 (123)
T 1okr_A 5 TYEISSAEWEVMNIIWM---KKYASANNIIEEIQMQKDWSPKTIRTLITRLY 53 (123)
T ss_dssp CCCCCHHHHHHHHHHHH---HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHh---CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHH
Confidence 34689999999876552 35799999999999 89999987766543
No 224
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=66.95 E-value=5.1 Score=33.18 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=32.2
Q ss_pred HHHHHhcCCHHHHH-HHhHHhcCCCCCCCCHHHHHHHh-CCCHHHHHHHHHH
Q 010338 445 LDDVLDSLKPKESL-VIRQRFGLDGKGDRTLGEIAGNL-NISREMVRKHEVK 494 (513)
Q Consensus 445 L~~aL~~L~~rEr~-VL~lRyGL~~~~~~Tl~EIA~~L-gISrerVRqi~~r 494 (513)
+..++.-|+.+-+. ||..-+ ..+.++.||++.+ |+|..+|.+.+.+
T Consensus 4 ~~~~l~~l~~~~~~~IL~~L~----~~~~~~~eLa~~l~~is~~tls~~L~~ 51 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILXHLT----HGKKRTSELKRLMPNITQKMLTQQLRE 51 (107)
T ss_dssp HHHHHHHHCSTTHHHHHHHHT----TCCBCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHH----hCCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 34556666666654 443333 3579999999999 9999999866543
No 225
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=66.91 E-value=3.7 Score=32.45 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++.
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3789999999999999999999874
No 226
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=66.71 E-value=2.4 Score=31.89 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=19.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 010338 472 RTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 472 ~Tl~EIA~~LgISrerVRqi~ 492 (513)
.|..++|+.+|||+.+|++++
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 389999999999999999996
No 227
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=66.58 E-value=5.6 Score=29.54 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
.+ |+.++|+.+|+|..+|++++.
T Consensus 13 ~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 13 HG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred cC-CHHHHHHHHCcCHHHHHHHHc
Confidence 35 999999999999999999983
No 228
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=66.00 E-value=5.8 Score=36.87 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
.++|+.+||+.||+|+.+|.+++.
T Consensus 174 ~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 174 EGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 579999999999999999987754
No 229
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=65.90 E-value=20 Score=32.71 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=34.0
Q ss_pred HhcCCHHHHHHHhH-----HhcC-----CCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 449 LDSLKPKESLVIRQ-----RFGL-----DGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 449 L~~L~~rEr~VL~l-----RyGL-----~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+...+..+|..-.+ ++|- .-.-..|.++||..+|+|+++|. |++++|++
T Consensus 148 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 206 (232)
T 2gau_A 148 LTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAI----RTLSTFVS 206 (232)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 44578888866444 5543 01246899999999999999987 55556654
No 230
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=65.79 E-value=5.1 Score=35.23 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|..|+|+.+|||+++|+++++.
T Consensus 79 ~~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 79 KKGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999999874
No 231
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=65.32 E-value=5.3 Score=34.11 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=31.4
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHh--CCCHHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDGKGDRTLGEIAGNL--NISREMVRKHEVK 494 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~L--gISrerVRqi~~r 494 (513)
+++-.+.||.+--- ..+.|..+||+.+ |+|+.+|++++.+
T Consensus 11 md~~d~~IL~~L~~---~g~~s~~eLA~~l~~giS~~aVs~rL~~ 52 (111)
T 3b73_A 11 MTIWDDRILEIIHE---EGNGSPKELEDRDEIRISKSSVSRRLKK 52 (111)
T ss_dssp CCHHHHHHHHHHHH---HSCBCHHHHHTSTTCCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH---cCCCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 67777888766420 2489999999999 9999999987654
No 232
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=64.92 E-value=5 Score=30.56 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
-++..|+|+.+|||+++|.++....
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCC
Confidence 3689999999999999999998765
No 233
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=64.89 E-value=5.3 Score=31.85 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++.
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3689999999999999999999874
No 234
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=64.78 E-value=4.6 Score=33.72 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|.+|+|+.+|||+.+|++++..
T Consensus 33 ~gltq~elA~~~gis~~~is~~E~G 57 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVERK 57 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999863
No 235
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=64.63 E-value=6.7 Score=34.03 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=24.1
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 469 KGDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 469 ~~~~-Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+..+ |..++|+.||||+.+|| +|++.|..
T Consensus 25 G~~LPse~~La~~~gvSr~tVr----~Al~~L~~ 54 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATAR----NGLTLLVE 54 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3455 99999999999999998 57777775
No 236
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=64.45 E-value=6.2 Score=32.30 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
...|..|||+.||||..+||..+.+
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 5789999999999999999976554
No 237
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=64.32 E-value=8.4 Score=33.28 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=35.8
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN----ISREMVRKHEVKG 495 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~Lg----ISrerVRqi~~rA 495 (513)
..|++.|..||..-+.. .++.|..||++.|+ ++..+|..++.+=
T Consensus 5 ~~lt~~e~~vL~~L~~~--~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (138)
T 2g9w_A 5 TRLGDLERAVMDHLWSR--TEPQTVRQVHEALSARRDLAYTTVMAVLQRL 52 (138)
T ss_dssp GGCCHHHHHHHHHHHTC--SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhc--CCCCCHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 57999999999887731 25799999999998 8999999776653
No 238
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=64.03 E-value=5.3 Score=36.82 Aligned_cols=37 Identities=24% Similarity=0.150 Sum_probs=28.7
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++..-.-++.. .++|++|+|+.+|||+.+|.++++-
T Consensus 90 ~s~~~lk~lR~~------~glTQ~elA~~LGvsr~tis~yE~G 126 (170)
T 2auw_A 90 VSHEMFGDWMHR------NNLSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp CCHHHHHHHHHH------TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCcHHHHHHHHH------cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 555544444444 4789999999999999999999873
No 239
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=63.82 E-value=6.2 Score=33.04 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|++++..
T Consensus 35 ~gltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 35 YGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4789999999999999999999873
No 240
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=63.49 E-value=7.9 Score=35.42 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=29.2
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 454 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 454 ~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
++...||.+-. .+....|..|||+.||||+.+|++.+.+
T Consensus 21 ~R~~~Il~~L~--~~~~~~s~~eLa~~l~vS~~Ti~rdi~~ 59 (187)
T 1j5y_A 21 ERLKSIVRILE--RSKEPVSGAQLAEELSVSRQVIVQDIAY 59 (187)
T ss_dssp HHHHHHHHHHH--HCSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 56666766543 1124589999999999999999987763
No 241
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=63.35 E-value=5.6 Score=32.93 Aligned_cols=25 Identities=20% Similarity=0.024 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++.
T Consensus 21 ~glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 21 HGLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999874
No 242
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=62.67 E-value=6.5 Score=32.04 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|++++..
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5789999999999999999999875
No 243
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=62.55 E-value=83 Score=32.96 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.7
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHhc
Q 010338 378 RVPTDEEIIQGVNISPERYREVMKAS 403 (513)
Q Consensus 378 R~PT~eELA~~lgis~e~v~~~l~~~ 403 (513)
..-|.+|||+.+|||.++|+.++..+
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~RA 419 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENKA 419 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67899999999999999999886543
No 244
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=62.54 E-value=7.7 Score=35.83 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=32.2
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
..|+|-|+.....++- ..++|..+||+.+|+|+.+|++++.
T Consensus 34 edL~piE~A~a~~~L~---~~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 34 NELTPREIADFIGREL---AKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TCCCHHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3588888877655441 2478999999999999999998754
No 245
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=62.41 E-value=7.8 Score=32.32 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=32.0
Q ss_pred HHHHHhcCCHHHH-HHHhHHhcCCCCCCCCHHHHHHHh-CCCHHHHHHHHHH
Q 010338 445 LDDVLDSLKPKES-LVIRQRFGLDGKGDRTLGEIAGNL-NISREMVRKHEVK 494 (513)
Q Consensus 445 L~~aL~~L~~rEr-~VL~lRyGL~~~~~~Tl~EIA~~L-gISrerVRqi~~r 494 (513)
+..++.-+..+-+ .||..-+ ..+.++.|||+.+ |+|..+|.+++.+
T Consensus 12 ~~~~l~~l~~~~~~~IL~~L~----~~~~~~~eLa~~l~~is~~tvs~~L~~ 59 (112)
T 1z7u_A 12 INLALSTINGKWKLSLMDELF----QGTKRNGELMRALDGITQRVLTDRLRE 59 (112)
T ss_dssp HHHHHHTTCSTTHHHHHHHHH----HSCBCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHH----hCCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 4456666665544 3444333 2479999999999 9999999866544
No 246
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=62.33 E-value=6.6 Score=30.30 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=20.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 010338 472 RTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 472 ~Tl~EIA~~LgISrerVRqi~~ 493 (513)
.|+.++|+.||||+.+|++++.
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHH
Confidence 4999999999999999999873
No 247
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=62.25 E-value=5.8 Score=34.37 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=23.3
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 470 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 470 ~~~-Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+.+ |..++|+.||||+.+|| +|++.|..
T Consensus 36 ~~LPser~La~~~gVSr~tVR----eAl~~L~~ 64 (134)
T 4ham_A 36 EKILSIREFASRIGVNPNTVS----KAYQELER 64 (134)
T ss_dssp CEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCccHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 445 88999999999999999 67777764
No 248
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=62.04 E-value=1.6 Score=44.15 Aligned_cols=42 Identities=7% Similarity=0.063 Sum_probs=0.0
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 496 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rAL 496 (513)
+.+++..||...|- .++.|.+|||+.||+|+.+|++.+.+.-
T Consensus 18 ~~~r~~~iL~~l~~---~~~~t~~eLa~~l~vs~~Tv~r~l~~Le 59 (345)
T 2o0m_A 18 VLQERFQILRNIYW---MQPIGRRSLSETMGITERVLRTETDVLK 59 (345)
T ss_dssp ---------------------------------------------
T ss_pred hhHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56677777766542 4689999999999999999998776543
No 249
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=61.98 E-value=5.8 Score=31.76 Aligned_cols=25 Identities=8% Similarity=-0.068 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++.
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999998863
No 250
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=61.52 E-value=8.1 Score=32.59 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+++|+++++.
T Consensus 24 ~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 5789999999999999999999864
No 251
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=60.78 E-value=7.1 Score=33.74 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
..++|++|+|+.+|+|+.+|+++++--
T Consensus 14 ~~gltq~elA~~~gis~~~is~iE~g~ 40 (130)
T 3fym_A 14 RLGMTLTELEQRTGIKREMLVHIENNE 40 (130)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 468999999999999999999999753
No 252
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=60.35 E-value=7.7 Score=32.42 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=34.8
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN----ISREMVRKHEVKG 495 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~Lg----ISrerVRqi~~rA 495 (513)
..|++.|..||..-+- .++.|..|||+.++ ++.++|..++.+=
T Consensus 6 ~~Lt~~q~~vL~~L~~---~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD---KKSVSANEIVVEIQKYKEVSDKTIRTLITRL 52 (126)
T ss_dssp CCCCHHHHHHHHHHHH---SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh---cCCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Confidence 3589999999887763 35799999999997 5899999776653
No 253
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=60.19 E-value=7.6 Score=32.06 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|..++|+.+|||+.+|+++++.
T Consensus 22 ~~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 22 PLDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46789999999999999999998864
No 254
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=59.96 E-value=5.8 Score=32.31 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++.
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3689999999999999999999864
No 255
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=59.95 E-value=14 Score=34.01 Aligned_cols=40 Identities=18% Similarity=0.094 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 363 GEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 363 ~ki~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
.++.....++..+.|..||..|||+.+|++...++..++.
T Consensus 8 ~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~ 47 (196)
T 3k2z_A 8 RKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIA 47 (196)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHH
Confidence 3455555566677899999999999999998888776653
No 256
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=59.94 E-value=8.1 Score=29.03 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=24.2
Q ss_pred HHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 456 ESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 456 Er~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
|+.+|..-+- ..+.+..+.|+.||||+.++...+.
T Consensus 20 E~~~i~~aL~---~~~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 20 EKIFIEEKLR---EYDYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHH---HTTTCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4555544332 1345788999999999999887654
No 257
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=59.81 E-value=6.4 Score=33.98 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHhC-----CCHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLN-----ISREMVRKHEV 493 (513)
Q Consensus 469 ~~~~Tl~EIA~~Lg-----ISrerVRqi~~ 493 (513)
..++|++|+|+.+| ||+++|+++++
T Consensus 22 ~~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 22 RGPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp TCSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 35799999999998 99999999986
No 258
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=59.71 E-value=9 Score=32.80 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=22.7
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 470 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 470 ~~~-Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
..+ |..++|+.||||+.+|| +|+..|..
T Consensus 35 ~~Lps~~~La~~~~vSr~tvr----~Al~~L~~ 63 (125)
T 3neu_A 35 DKLPSVREMGVKLAVNPNTVS----RAYQELER 63 (125)
T ss_dssp CBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 445 79999999999999998 66666653
No 259
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=58.98 E-value=9.3 Score=31.70 Aligned_cols=27 Identities=19% Similarity=0.024 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
..+.|+.|+|..+|||.+.|.++...-
T Consensus 47 ~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 47 HGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp TTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 457899999999999999999998764
No 260
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=58.89 E-value=6.1 Score=32.85 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+.+|+++++.
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 3689999999999999999999863
No 261
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=58.86 E-value=7.7 Score=31.23 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHH----HHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREM----VRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrer----VRqi~~r 494 (513)
.++|..++|+.+|||+.+ |+++++.
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 478999999999999999 8888764
No 262
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=58.55 E-value=8.1 Score=28.96 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=18.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 010338 472 RTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 472 ~Tl~EIA~~LgISrerVRqi~~ 493 (513)
.+..+.|+.||||+.++...+.
T Consensus 34 gn~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 3788999999999999876543
No 263
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=58.51 E-value=3.3 Score=39.28 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=31.4
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCH--HHHHHHhCCCHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTL--GEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl--~EIA~~LgISrerVRqi~~r 494 (513)
.|++.+..+|..-|-|.. .+.|. .+||+.||+|+.+|++.+.+
T Consensus 3 ~lt~~~e~~L~~L~~l~~-~~~~~~~~~La~~l~vs~~tvs~~l~~ 47 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLEE-EGVTPLRARIAERLDQSGPTVSQTVSR 47 (230)
T ss_dssp TTSSHHHHHHHHHHHHHH-HTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 577788788776664432 24555 99999999999999865544
No 264
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=58.27 E-value=19 Score=29.61 Aligned_cols=31 Identities=16% Similarity=0.021 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHh
Q 010338 470 GDRTLGEIAGNL-NISREMVRKHEVKGLMKLK 500 (513)
Q Consensus 470 ~~~Tl~EIA~~L-gISrerVRqi~~rALkKLR 500 (513)
.++|+.+||+.| |.+.++|.....+.-+.+.
T Consensus 45 t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~ 76 (94)
T 1j1v_A 45 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLRE 76 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 589999999999 8999999988877766664
No 265
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=57.97 E-value=8.8 Score=34.79 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHhHH--hcC---CCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 450 DSLKPKESLVIRQR--FGL---DGKGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 450 ~~L~~rEr~VL~lR--yGL---~~~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
.++++..+.-..+. -++ ++..++|..|||+.||||+.++.++..
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 44666666655432 222 123378999999999999999999877
No 266
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=57.94 E-value=30 Score=26.33 Aligned_cols=55 Identities=7% Similarity=0.045 Sum_probs=40.4
Q ss_pred cCCHHHHHHHhHHhc---CCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh
Q 010338 451 SLKPKESLVIRQRFG---LDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRV 505 (513)
Q Consensus 451 ~L~~rEr~VL~lRyG---L~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~ 505 (513)
.+|+.+..+|...|- -+.+. ...-.+||..+|+|...|.........++++....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 478888888888874 22111 23467899999999999999999999999987643
No 267
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=57.70 E-value=30 Score=30.74 Aligned_cols=27 Identities=33% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+.|.++||..+|+|+++|. |++++|++
T Consensus 167 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 193 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVG----RILKMLED 193 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5799999999999999988 55666664
No 268
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=57.62 E-value=5.2 Score=36.06 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
-+|+.|+|+.||||+.+|+++.+.
T Consensus 31 ~LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHT
T ss_pred eEcHHHHHHHhCCCHHHHHHHHHC
Confidence 479999999999999999998654
No 269
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=57.59 E-value=13 Score=31.95 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=31.0
Q ss_pred CCHHHHHHHhHHhcC--CCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGL--DGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 452 L~~rEr~VL~lRyGL--~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
|++.|-.|+..-+.+ .+....|..+||+.+|+|..+|.+.+.+=
T Consensus 30 Lt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~L 75 (128)
T 2vn2_A 30 LGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRL 75 (128)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 677777665554322 12334799999999999999998766553
No 270
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=57.21 E-value=7.3 Score=34.12 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHhC-----CCHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLN-----ISREMVRKHEV 493 (513)
Q Consensus 469 ~~~~Tl~EIA~~Lg-----ISrerVRqi~~ 493 (513)
..++|++|+|+.+| ||+++|+++++
T Consensus 24 ~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 24 RGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp SCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 35799999999999 99999999986
No 271
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=57.08 E-value=22 Score=29.12 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=20.9
Q ss_pred CCHHHHHHhcCCCHHHHHHHHHhc
Q 010338 380 PTDEEIIQGVNISPERYREVMKAS 403 (513)
Q Consensus 380 PT~eELA~~lgis~e~v~~~l~~~ 403 (513)
-+..+||..+|++...|..++...
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478899999999999999888764
No 272
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=56.97 E-value=21 Score=26.21 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=38.9
Q ss_pred cCCHHHHHHHhHHhcC---CCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 451 SLKPKESLVIRQRFGL---DGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL---~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
.+++.+..+|...|.- ..+. .....+||..+|+|...|.........+.|..
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4678888888888853 2221 12356899999999999999998888887754
No 273
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=56.97 E-value=6.1 Score=33.06 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=23.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVKGL 496 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~rAL 496 (513)
++|..|+|+.+|||..++|.++..++
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 36899999999999999999998764
No 274
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=56.89 E-value=6.2 Score=36.95 Aligned_cols=26 Identities=8% Similarity=-0.028 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|..|+|+.+|+|+++|+++++.
T Consensus 28 ~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 28 ELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp TTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999999864
No 275
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=56.58 E-value=13 Score=31.56 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
....|..|||+.+|+|+.+|+++..
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~ 48 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVS 48 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHH
Confidence 4678999999999999999886554
No 276
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=56.13 E-value=5.5 Score=30.35 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=21.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 010338 472 RTLGEIAGNLNISREMVRKHEVKGL 496 (513)
Q Consensus 472 ~Tl~EIA~~LgISrerVRqi~~rAL 496 (513)
+|.+|+|+.||||+.||.+.....+
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 5789999999999999999887653
No 277
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=56.06 E-value=21 Score=28.02 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHhHHhc-CC--CCCCCCHHHHHHHhCCCHHHHHHHH
Q 010338 438 PALLRLALDDVLDSLKPKESLVIRQRFG-LD--GKGDRTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 438 ~~~l~~~L~~aL~~L~~rEr~VL~lRyG-L~--~~~~~Tl~EIA~~LgISrerVRqi~ 492 (513)
...+..+|. ..|+++++.|....-| |+ |+=..++.+||..+|++.+.|...+
T Consensus 15 ~ehL~~Ql~---~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL 69 (76)
T 2k9l_A 15 LEELQQNIK---LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVR 69 (76)
T ss_dssp HHHHHHHHH---HHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHc---ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHH
Confidence 334555554 3589999988766544 33 5556899999999999999886543
No 278
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=55.66 E-value=27 Score=26.51 Aligned_cols=52 Identities=15% Similarity=0.344 Sum_probs=39.8
Q ss_pred CCHHHHHHHhHHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010338 452 LKPKESLVIRQRFGLDGK-GDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 503 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~-~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~ 503 (513)
+++.+..+|...|-.+.+ ......+||..+|+|...|..+...-..+.|...
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 14 ITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 566777777777744332 2346789999999999999999988888887654
No 279
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=55.20 E-value=36 Score=29.25 Aligned_cols=24 Identities=8% Similarity=0.074 Sum_probs=21.0
Q ss_pred CCHHHHHHhcCCCHHHHHHHHHhc
Q 010338 380 PTDEEIIQGVNISPERYREVMKAS 403 (513)
Q Consensus 380 PT~eELA~~lgis~e~v~~~l~~~ 403 (513)
-+..+||+.+|++...|..++...
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 578999999999999999988764
No 280
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=55.11 E-value=7.9 Score=34.50 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=28.5
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 453 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 453 ~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
+|.-..||.+-. ..++|..|||+.||+|+.+|++.+.
T Consensus 57 ~p~R~~IL~~L~----~~~~t~~eLa~~lgls~stvs~hL~ 93 (151)
T 3f6v_A 57 EPTRRRLVQLLT----SGEQTVNNLAAHFPASRSAISQHLR 93 (151)
T ss_dssp SHHHHHHHHHGG----GCCEEHHHHHTTSSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHH----hCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 455566665544 3579999999999999999997654
No 281
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=54.74 E-value=7 Score=32.42 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|..++|+.+|||+++|++++..
T Consensus 48 ~glsq~elA~~~gis~~~is~~E~G 72 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYERG 72 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999998863
No 282
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=54.74 E-value=9 Score=32.15 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=22.9
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 470 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 470 ~~~-Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+.+ |..++|+.||||+.+|| +|+..|..
T Consensus 31 ~~lPs~~~La~~~~vSr~tvr----~al~~L~~ 59 (113)
T 3tqn_A 31 EMIPSIRKISTEYQINPLTVS----KAYQSLLD 59 (113)
T ss_dssp CEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 345 99999999999999998 66776753
No 283
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=54.57 E-value=78 Score=29.77 Aligned_cols=37 Identities=5% Similarity=0.033 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHH
Q 010338 365 IQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMK 401 (513)
Q Consensus 365 i~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~ 401 (513)
+.++...+...+....|.+++|+.+|+|+..+..+.+
T Consensus 171 ~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 171 MEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3444445555667788999999999999999887764
No 284
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=54.52 E-value=11 Score=35.38 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=23.9
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 469 KGDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 469 ~~~~-Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
++.. |-.++|+.||||+.+|| .||+.|..
T Consensus 28 G~~LPsE~eLa~~~gVSR~tVR----eAL~~L~~ 57 (239)
T 1hw1_A 28 GTILPAERELSELIGVTRTTLR----EVLQRLAR 57 (239)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4567 89999999999999999 66776753
No 285
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=54.49 E-value=13 Score=34.58 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=29.4
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 454 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 454 ~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
+|++.|+.+-- ...-.|.+|+|+.||||..|||.= |..|-.+
T Consensus 12 eR~~~i~~~l~---~~~~~~~~~la~~~~vs~~TiRrD----l~eL~~~ 53 (190)
T 4a0z_A 12 KRREAIRQQID---SNPFITDHELSDLFQVSIQTIRLD----RTYLNIP 53 (190)
T ss_dssp HHHHHHHHHHH---HCTTCCHHHHHHHHTSCHHHHHHH----HHHHTCC
T ss_pred HHHHHHHHHHH---HCCCEeHHHHHHHHCCCHHHHHHH----HHHhcCc
Confidence 45666665544 134579999999999999999954 4444443
No 286
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=54.37 E-value=11 Score=35.90 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
++..+..++|+.||||+.+|| .||+.|..
T Consensus 47 G~~L~e~~La~~lgVSr~~VR----eAL~~L~~ 75 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVR----EALRQLEA 75 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCeeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 466899999999999999999 67777753
No 287
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=53.99 E-value=7.6 Score=30.39 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
-+|++|+|+.|||++++|+++...
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHc
Confidence 479999999999999999998755
No 288
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=53.86 E-value=10 Score=34.43 Aligned_cols=25 Identities=20% Similarity=0.054 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|++|+|+.+|||+++|+++++.
T Consensus 22 ~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 22 VKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5789999999999999999999874
No 289
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=53.70 E-value=33 Score=30.38 Aligned_cols=49 Identities=20% Similarity=0.028 Sum_probs=32.1
Q ss_pred HhcCCHHHHHHHhHH-----hcCCC-----CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 449 LDSLKPKESLVIRQR-----FGLDG-----KGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 449 L~~L~~rEr~VL~lR-----yGL~~-----~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+...+..+|..-.+. +|-.+ .-+.|.++||..+|+|+++|. |++++|++
T Consensus 107 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 165 (195)
T 3b02_A 107 LQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVS----KVLADLRR 165 (195)
T ss_dssp HTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 445788887653332 22110 124899999999999999988 45555653
No 290
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=53.55 E-value=17 Score=36.33 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=33.1
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKL 499 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKL 499 (513)
..++...||.+-- .....|.+|||+.||||+.+|++.+.. |+..
T Consensus 3 ~~~r~~~Il~~L~---~~~~~s~~eLa~~l~vS~~ti~r~l~~-L~~~ 46 (321)
T 1bia_A 3 DNTVPLKLIALLA---NGEFHSGEQLGETLGMSRAAINKHIQT-LRDW 46 (321)
T ss_dssp CCHHHHHHHHHHT---TSSCBCHHHHHHHHTSCHHHHHHHHHH-HHHT
T ss_pred cchHHHHHHHHHH---cCCCcCHHHHHHHHCCCHHHHHHHHHH-HHhC
Confidence 3466677776553 245789999999999999999998874 4444
No 291
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=53.42 E-value=18 Score=29.40 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.++.|+.+||+.+|+|+.++.++..+.
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 467999999999999999988877654
No 292
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=53.39 E-value=8.7 Score=31.24 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+++..++|+..|||+++++.|++.
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred hcCHHHHHHHcCCCHHHHHHHHcC
Confidence 678999999999999999998864
No 293
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=53.23 E-value=8.7 Score=33.49 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+.|..+||+.||||+.+|++.+.+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~ 77 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKR 77 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHH
Confidence 4689999999999999999865544
No 294
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=53.18 E-value=40 Score=29.94 Aligned_cols=49 Identities=20% Similarity=0.081 Sum_probs=31.6
Q ss_pred HhcCCHHHHHHHhHHh-----cCC-----CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 449 LDSLKPKESLVIRQRF-----GLD-----GKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 449 L~~L~~rEr~VL~lRy-----GL~-----~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+...+..+|..-.+.. |-. -.-+.|.++||..+|+|+++|. |++++|++
T Consensus 114 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 172 (202)
T 2zcw_A 114 LATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVT----KVIGELAR 172 (202)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4457788776533322 110 0124899999999999999998 45555653
No 295
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=53.07 E-value=2.8 Score=38.49 Aligned_cols=26 Identities=8% Similarity=-0.021 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.++|..+||+.||||+.+|.+++...
T Consensus 157 ~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 157 QGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp --------------------------
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 57899999999999999999877654
No 296
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=53.02 E-value=10 Score=34.29 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|++++|+.+|||+++|+++++.
T Consensus 23 ~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5789999999999999999999864
No 297
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=52.91 E-value=21 Score=29.09 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.++.|+.+||+.+|+|+.++.+...+.
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 458999999999999999988877665
No 298
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=52.90 E-value=23 Score=26.09 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=38.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 451 SLKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~-~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
.+++.+..+|...|..+.+.. ....+||..+|+|...|......-..|.|..
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 367778888888885433222 2467899999999999999998888887754
No 299
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=52.79 E-value=22 Score=28.64 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
+.|+.+||+.+|+|+.++.+...+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 7999999999999999998876665
No 300
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=52.74 E-value=6.2 Score=32.31 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=23.1
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 470 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 470 ~~~-Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
..+ |..+||+.||||+.+|+ +|++.|..
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr----~al~~L~~ 61 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVS----RALAVLKS 61 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHH----HHTTTTTT
T ss_pred CCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 445 99999999999999999 46666765
No 301
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=52.72 E-value=4.7 Score=38.13 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=31.3
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCC--CHHHHHHHhCCCHHHHHHHHHH
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDR--TLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~--Tl~EIA~~LgISrerVRqi~~r 494 (513)
..|++.+..+|...|-+.. ++. +..+||+.||+|+.+|.+...+
T Consensus 2 ~~lt~~~e~yL~~i~~l~~-~~~~~~~~~la~~l~vs~~tvs~~l~~ 47 (226)
T 2qq9_A 2 KDLVATTEMYLRTIYELEE-EGVTPLRARIAERLEQSGPTVSQTVAR 47 (226)
T ss_dssp -CHHHHHHHHHHHHHHHHH-HTCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhh-cCCCccHHHHHHHHCCCHHHHHHHHHH
Confidence 3567778788777765532 234 4599999999999999975544
No 302
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=52.64 E-value=2.9 Score=37.17 Aligned_cols=26 Identities=31% Similarity=0.206 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|..|||+.+|||+.+|++++..
T Consensus 12 ~~gltq~elA~~lgis~~~vs~~e~G 37 (158)
T 2p5t_A 12 THDLTQLEFARIVGISRNSLSRYENG 37 (158)
T ss_dssp --------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 46899999999999999999998753
No 303
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=52.62 E-value=16 Score=31.81 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=30.9
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010338 454 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMK 498 (513)
Q Consensus 454 ~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkK 498 (513)
.|.+.|... | .+.+..++|..+|+|..+|++|..+..+.
T Consensus 81 ~Rn~~I~~~-f-----~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 81 IRDLRIWND-F-----NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHH-C-----CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-h-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 355666654 5 37899999999999999999999876554
No 304
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=52.52 E-value=14 Score=32.30 Aligned_cols=47 Identities=15% Similarity=0.008 Sum_probs=36.6
Q ss_pred cCCHHHHHHHhHHhcCC--CCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLD--GKGDRTLGEIAGNLNISREMVRKHEVKGLM 497 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~--~~~~~Tl~EIA~~LgISrerVRqi~~rALk 497 (513)
.|++.|-.||...+.+. |...-|.++||+.||+|...|.+.+.+=++
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 48999988887766442 234579999999999999999877766544
No 305
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=52.34 E-value=20 Score=32.12 Aligned_cols=28 Identities=29% Similarity=0.163 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 189 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVS----RVLHALAE 189 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 46899999999999999988 55666664
No 306
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=52.24 E-value=35 Score=25.65 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=41.1
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~ 504 (513)
+++.+..+|...|..+.+. .....+||..+|+|...|......-..+.|....
T Consensus 8 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 8 FTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 6788888888888543221 1346789999999999999999988888887544
No 307
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=52.19 E-value=16 Score=34.91 Aligned_cols=40 Identities=23% Similarity=0.103 Sum_probs=31.7
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
.|++-|+.....+.- ..++|.++||+.+|+|+.+|++++.
T Consensus 117 ~L~~~E~a~~~~~l~---~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 117 DLSPVEEARGYQALL---EMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TCCHHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 588888876655442 2478999999999999999988764
No 308
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=51.87 E-value=1.4e+02 Score=26.96 Aligned_cols=37 Identities=41% Similarity=0.629 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHccCCHHHHHHHHH
Q 010338 234 FVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLE 270 (513)
Q Consensus 234 l~~~~~~l~~~l~r~p~~~e~A~~~~~s~e~L~~~~~ 270 (513)
+......++..+|+.|+..++|...|++.+.+..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 137 (239)
T 1rp3_A 101 IKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLD 137 (239)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHH
Confidence 3445566777889999999999999998877665544
No 309
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=51.68 E-value=14 Score=34.48 Aligned_cols=28 Identities=29% Similarity=0.150 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVKGL 496 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~rAL 496 (513)
..+.|..+||+.||+|+.+|++...+--
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le 45 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLL 45 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 4579999999999999999999887643
No 310
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=51.61 E-value=9.4 Score=34.12 Aligned_cols=27 Identities=37% Similarity=0.343 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
..|.++||..+|+|+++|. |++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 190 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVG----RVLKSLEE 190 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5899999999999999988 55556654
No 311
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=51.59 E-value=28 Score=25.66 Aligned_cols=50 Identities=10% Similarity=0.196 Sum_probs=37.6
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+++.+..+|...|..+.+. .....+||..+|+|...|......-..+.|.
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 10 FSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 6777888888888543322 2346789999999999999998877777664
No 312
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=51.47 E-value=51 Score=29.65 Aligned_cols=27 Identities=33% Similarity=0.319 Sum_probs=22.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+.|.++||..+|+|+++|. |++++|++
T Consensus 187 ~lt~~~lA~~lg~sr~tvs----R~l~~L~~ 213 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAG----RVLKKLQA 213 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 3799999999999999998 55666664
No 313
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=51.26 E-value=18 Score=31.73 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++++.||++.+|||+.+|.+++.+
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~ 60 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRN 60 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4799999999999999998866544
No 314
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=51.02 E-value=11 Score=32.39 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=23.4
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 469 KGDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 469 ~~~~-Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+..+ |..++|+.||||+.+|| +|+..|..
T Consensus 32 G~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 61 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVA----KAYKELEA 61 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3455 99999999999999999 56666753
No 315
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.81 E-value=26 Score=27.42 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=37.2
Q ss_pred CCHHHHHHHhHHhcCC----CC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 452 LKPKESLVIRQRFGLD----GK-GDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~----~~-~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+++.+..+|...|--. .+ ......+||..+|++...|..+......|.|.
T Consensus 15 ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 15 FSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp CCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhh
Confidence 6788888888888321 00 01245789999999999999999888877765
No 316
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=50.81 E-value=12 Score=33.81 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+.|.++||..+|+|+++|. |.+++|++
T Consensus 169 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 195 (220)
T 3dv8_A 169 KITHETIANHLGSHREVIT----RMLRYFQV 195 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 6899999999999999988 55566664
No 317
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=50.77 E-value=9.7 Score=29.57 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=20.7
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 010338 473 TLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 473 Tl~EIA~~LgISrerVRqi~~r 494 (513)
|+.++|+.+|||+++|+++++.
T Consensus 29 sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999999999874
No 318
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=50.62 E-value=11 Score=35.04 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=28.1
Q ss_pred HHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 458 LVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 458 ~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
.|+...|. .++..|..++|+.||||+..|| .||+.|..
T Consensus 24 ~I~~g~l~--pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 61 (218)
T 3sxy_A 24 MILNHELK--LGEKLNVRELSEKLGISFTPVR----DALLQLAT 61 (218)
T ss_dssp HHHTTSSC--TTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHhCCCC--CCCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34444442 3456899999999999999999 67777763
No 319
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=50.59 E-value=25 Score=27.92 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=39.4
Q ss_pred CCHHHHHHHhHHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 452 LKPKESLVIRQRFGLDGK-GDRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~-~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
.++.|..+|.-.|-.+.+ ......+||..+|+|...|.........|.|+.
T Consensus 10 fT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 567777777777754322 235678999999999999999999888888754
No 320
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=50.57 E-value=16 Score=34.22 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=31.3
Q ss_pred HHHhcC-CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 447 DVLDSL-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 447 ~aL~~L-~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++..| ++-...||.+-. ..++|..|||+.+|+|.++|++++.+
T Consensus 7 ~ilkaL~~~~rl~IL~~L~----~~~~s~~eLa~~l~is~stvs~hLk~ 51 (202)
T 2p4w_A 7 RLLDVLGNETRRRILFLLT----KRPYFVSELSRELGVGQKAVLEHLRI 51 (202)
T ss_dssp HHHHHHHSHHHHHHHHHHH----HSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH----hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344444 455566665543 35899999999999999999876543
No 321
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=50.54 E-value=12 Score=34.15 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=22.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+.|.++||..+|+|+++|. |++++|++
T Consensus 163 ~~t~~~lA~~lG~sr~tvs----R~l~~L~~ 189 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTS----TALNSLIK 189 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 4899999999999999988 55555653
No 322
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=50.39 E-value=25 Score=33.66 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
.++|..+||+.+|||.++|+++++
T Consensus 43 ~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 43 HNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHh
Confidence 378999999999999999999997
No 323
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=50.39 E-value=12 Score=34.21 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=22.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+.|.++||..+|+|+++|. |++++|++
T Consensus 175 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 201 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVS----RVLKRLEA 201 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 6899999999999999988 55566664
No 324
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=50.32 E-value=11 Score=34.32 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHhcC--CCHHHHHHHHHhc
Q 010338 360 SVRGEIQRAKLELLFELKRVPTDEEIIQGVN--ISPERYREVMKAS 403 (513)
Q Consensus 360 ~~~~ki~ka~~~L~~elgR~PT~eELA~~lg--is~e~v~~~l~~~ 403 (513)
+....+......+..--|.+-|.++||+.++ ++.+++..++..-
T Consensus 3 ~~~~~~~~~iEAlLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L 48 (162)
T 1t6s_A 3 EQRQQLLRSLEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDEL 48 (162)
T ss_dssp HHHHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHH
Confidence 3444555555566666688899999999999 9999998887543
No 325
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=49.65 E-value=9.9 Score=30.77 Aligned_cols=38 Identities=11% Similarity=0.018 Sum_probs=25.9
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 454 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 454 ~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.-|+.+|..-+- ..+.+..+.|+.||||+.+++..+.+
T Consensus 50 ~~E~~~i~~aL~---~~~gn~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 50 ELERTLLTTALR---HTQGHKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHH---HTTTCTTHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HhCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 346666655442 12446779999999999999866543
No 326
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=49.47 E-value=7.3 Score=32.55 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 010338 472 RTLGEIAGNLNISREMVRKHEVKGL 496 (513)
Q Consensus 472 ~Tl~EIA~~LgISrerVRqi~~rAL 496 (513)
+|..|+|+.+|||..++|.++..++
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~Gl 27 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNIEL 27 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHTTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCC
Confidence 6899999999999999999988654
No 327
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=49.29 E-value=12 Score=29.84 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHH-HHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREM-VRKHEVKG 495 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrer-VRqi~~rA 495 (513)
.+.|..|||+.+|+|+.+ |.++..+-
T Consensus 29 ~~~t~~eLa~~l~is~~t~vs~~l~~L 55 (95)
T 2pg4_A 29 YEPSLAEIVKASGVSEKTFFMGLKDRL 55 (95)
T ss_dssp CCCCHHHHHHHHCCCHHHHHTTHHHHH
T ss_pred CCCCHHHHHHHHCCCchHHHHHHHHHH
Confidence 379999999999999999 88766543
No 328
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=49.10 E-value=45 Score=25.14 Aligned_cols=52 Identities=17% Similarity=0.074 Sum_probs=39.9
Q ss_pred cCCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 451 SLKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
.+++.+..+|...|-.+.+. .....+||..+|+|...|..+...-..+.|..
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 61 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHH
Confidence 36778888888888554332 34567999999999999999988777777643
No 329
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=49.05 E-value=13 Score=32.90 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=27.3
Q ss_pred CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~ 492 (513)
+++.+.+++..... ..+.+..+||+.||+|+.+|++.+
T Consensus 140 ~~~~~~~~~~~~~~---~~~~~~~~ia~~l~is~~tv~~~l 177 (184)
T 3rqi_A 140 VDRLEWEHIQRVLA---ENNNNISATARALNMHRRTLQRKL 177 (184)
T ss_dssp ---CHHHHHHHHHH---HTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hccccHHHHHHHcCCcHHHHHHHH
Confidence 55666677665552 357899999999999999998654
No 330
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=49.03 E-value=25 Score=29.19 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=31.0
Q ss_pred hcCCHHHHHHHh-HHhcC--CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 450 DSLKPKESLVIR-QRFGL--DGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 450 ~~L~~rEr~VL~-lRyGL--~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..|++-+-.|+. +.... -.+..+++.+||+.+++++++++..+.+
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~r 59 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQ 59 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHH
Confidence 347777777766 33321 0235689999999999999999866544
No 331
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=49.01 E-value=12 Score=37.60 Aligned_cols=40 Identities=25% Similarity=0.170 Sum_probs=29.3
Q ss_pred HHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 454 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 454 ~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+..+.||.+-. ..++...|-+|||+.||||+.+|++.+..
T Consensus 3 ~~~~~iL~~L~-~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~ 42 (323)
T 3rkx_A 3 KYSQDVLQLLY-KNKPNYISGQSIAESLNISRTAVKKVIDQ 42 (323)
T ss_dssp CHHHHHHHHHH-HHTTSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHH-hCCCCccCHHHHHHHHCCCHHHHHHHHHH
Confidence 34456665542 11235789999999999999999998864
No 332
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=49.00 E-value=9.5 Score=37.04 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi 491 (513)
+.+.|+.+||+..|||+.++..+
T Consensus 138 ~~~~T~~~IA~~AGvs~gtlY~y 160 (311)
T 4ich_A 138 YHNVRIHDIASELGTSNATIHYH 160 (311)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHH
T ss_pred CccCCHHHHHHHhCCCchhHHHh
Confidence 57899999999999999999765
No 333
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=48.89 E-value=31 Score=25.06 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=37.1
Q ss_pred cCCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 451 SLKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
.+++.+..+|...|..+.+. .....+||..+|+|...|......-..|.|.
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 46778888888888543322 2345789999999999999988776666653
No 334
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=48.80 E-value=12 Score=33.85 Aligned_cols=28 Identities=29% Similarity=0.140 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 193 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVS----VLLNDFKK 193 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 36899999999999999998 55555653
No 335
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=48.68 E-value=11 Score=31.05 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=29.1
Q ss_pred HHHhcCCHHHHH-HHhHHhcCCCCCCCCHHHHHHHh-CCCHHHHHHHHHH
Q 010338 447 DVLDSLKPKESL-VIRQRFGLDGKGDRTLGEIAGNL-NISREMVRKHEVK 494 (513)
Q Consensus 447 ~aL~~L~~rEr~-VL~lRyGL~~~~~~Tl~EIA~~L-gISrerVRqi~~r 494 (513)
.++.-+..+-+. ||..-+ ..++++.||++.+ |+|..+|.+++.+
T Consensus 17 ~~l~~l~~~~~~~IL~~L~----~~~~~~~eL~~~l~gis~~~ls~~L~~ 62 (107)
T 2fsw_A 17 KSMQIFAGKWTLLIIFQIN----RRIIRYGELKRAIPGISEKMLIDELKF 62 (107)
T ss_dssp HHHHHHTSSSHHHHHHHHT----TSCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHH----hCCcCHHHHHHHcccCCHHHHHHHHHH
Confidence 444445544443 443333 3579999999999 5999999876543
No 336
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=48.41 E-value=13 Score=33.80 Aligned_cols=49 Identities=33% Similarity=0.324 Sum_probs=32.0
Q ss_pred HhcCCHHHHHHHhH-----HhcCCC------CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 449 LDSLKPKESLVIRQ-----RFGLDG------KGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 449 L~~L~~rEr~VL~l-----RyGL~~------~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+...+..+|..-.+ ++|-.+ .-+.|.++||..+|+|+++|. |++++|++
T Consensus 144 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 203 (227)
T 3d0s_A 144 LIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVN----KALADFAH 203 (227)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 34467777755322 233211 135899999999999999988 45555654
No 337
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=48.02 E-value=35 Score=26.99 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=43.1
Q ss_pred CCHHHHHHHhHHhcC---CCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhhhh
Q 010338 452 LKPKESLVIRQRFGL---DGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYL 508 (513)
Q Consensus 452 L~~rEr~VL~lRyGL---~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~~~L 508 (513)
+++.+..+|...|.- ..+. ...-.+||..+|+|...|..+......+.|.......+
T Consensus 9 ft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~~~ 69 (83)
T 1le8_B 9 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPEL 69 (83)
T ss_dssp CCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCHHH
Confidence 678888888888853 2211 12456899999999999999999999999886554444
No 338
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=47.91 E-value=20 Score=34.27 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=26.9
Q ss_pred hCCCCCHHHHHHhcCCCHHHHHHHHHhcc
Q 010338 376 LKRVPTDEEIIQGVNISPERYREVMKASK 404 (513)
Q Consensus 376 lgR~PT~eELA~~lgis~e~v~~~l~~~~ 404 (513)
.||.|+.++||+.+|++.++++.+|....
T Consensus 33 ~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 33 KGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 79999999999999999999999997754
No 339
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=47.45 E-value=12 Score=34.45 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
++|.++||..+|+|+++|. |++++|++.
T Consensus 178 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~~ 205 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLS----RAFSRLKAA 205 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHH----HHHHHHGGG
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 5789999999999999988 556666643
No 340
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=47.38 E-value=22 Score=26.96 Aligned_cols=28 Identities=4% Similarity=0.050 Sum_probs=23.6
Q ss_pred HhCCCCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 375 ELKRVPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 375 elgR~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
+.+..-+..|||+.+|+|...|...+..
T Consensus 21 ~~~~~~s~~eLA~~lglsr~tv~~~l~~ 48 (67)
T 2heo_A 21 DDGGPVAIFQLVKKCQVPKKTLNQVLYR 48 (67)
T ss_dssp HHCSCEEHHHHHHHHCSCHHHHHHHHHH
T ss_pred HcCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3556678999999999999999988765
No 341
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=47.35 E-value=19 Score=29.66 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.++.|+.+||+.+|+|+.++.++..+.
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 457999999999999999988776664
No 342
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=47.30 E-value=12 Score=34.05 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
-+.|.++||..+|+|+++|.+ ++++|++
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR----~l~~l~~ 204 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSR----IMHRLGD 204 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHH----HHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 357999999999999999984 5555653
No 343
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=46.99 E-value=42 Score=28.88 Aligned_cols=58 Identities=14% Similarity=-0.002 Sum_probs=45.7
Q ss_pred HHHHHhcCCHHHHHHHhHHhcCCCCC---------CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 445 LDDVLDSLKPKESLVIRQRFGLDGKG---------DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 445 L~~aL~~L~~rEr~VL~lRyGL~~~~---------~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
|-.+--.|+..|+.||.+-...-+.. ..+..|+++.+|++..+..+.+..|...|...
T Consensus 12 Li~A~y~Ltl~E~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~~r 78 (132)
T 1hkq_A 12 LIESSHTLTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLFNR 78 (132)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HhhccCCCCHHHHHHHHHHHHhCCcCCCCCCCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHhhC
Confidence 44555679999999988866542111 36789999999999999999999999999753
No 344
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=46.82 E-value=25 Score=28.53 Aligned_cols=26 Identities=8% Similarity=0.081 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.+.|+++||+.+|+|+.++.++..+.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 68999999999999999988777654
No 345
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=46.73 E-value=55 Score=31.11 Aligned_cols=39 Identities=13% Similarity=0.035 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 364 EIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 364 ki~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
.+.++...+...+....|.++||+.+|+|...+..+.+.
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~ 42 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD 42 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345556666667788899999999999999999888654
No 346
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=46.69 E-value=12 Score=29.51 Aligned_cols=24 Identities=21% Similarity=0.208 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
-+|..|+|+.+|||..++|.++..
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHh
Confidence 479999999999999999999887
No 347
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=46.59 E-value=15 Score=34.26 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=31.8
Q ss_pred hcCCHHHHHHHhH-----HhcCCC------CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 450 DSLKPKESLVIRQ-----RFGLDG------KGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 450 ~~L~~rEr~VL~l-----RyGL~~------~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
...+..+|..-.+ ++|-.+ .-+.|.++||..+|+|+++|. |++++|++
T Consensus 145 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvs----R~l~~L~~ 203 (250)
T 3e6c_C 145 NTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVS----RVLASLKR 203 (250)
T ss_dssp TTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 3467777664333 243210 236899999999999999998 45566664
No 348
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=46.35 E-value=9.2 Score=33.95 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+.|.++||..+|+|+++|+++.++
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~ 191 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp -------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHh
Confidence 4789999999999999999977654
No 349
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=46.34 E-value=20 Score=28.62 Aligned_cols=71 Identities=10% Similarity=0.016 Sum_probs=38.0
Q ss_pred CCHHHHHHhcCCCHHH----HHHHHHhccCcccccCCCCCchhhhhccccCCCCCCchhhhHHHHHHHHHHHHHhcCCHH
Q 010338 380 PTDEEIIQGVNISPER----YREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPALLRLALDDVLDSLKPK 455 (513)
Q Consensus 380 PT~eELA~~lgis~e~----v~~~l~~~~~~~SLd~~~~~~~~e~~d~l~d~~~~~~ee~~~~~~l~~~L~~aL~~L~~r 455 (513)
-|..++|+.+|++... +..+.+-... .+++... .+...+ +.+++..+........+...+..|++.
T Consensus 15 lsq~~lA~~~gis~~~~~~~is~~E~g~~~-p~~~~l~-----~la~~l----~v~~~~l~~~~~~~~~~~~~~~~l~~~ 84 (98)
T 3lfp_A 15 ISQEKLGVLAGIDEASASARMNQYEKGKHA-PDFEMAN-----RLAKVL----KIPVSYLYTPEDDLAQIILTWNELNEQ 84 (98)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHHTSSC-CCHHHHH-----HHHHHH----TSCGGGGGCCCHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHhCCCcchhhhHHHHHHCCCCC-CCHHHHH-----HHHHHH----CcCHHHHhCCChhHHHHHHHHHhCCHH
Confidence 4778999999999998 7777655322 2222110 000000 011111110001123455778899999
Q ss_pred HHHHH
Q 010338 456 ESLVI 460 (513)
Q Consensus 456 Er~VL 460 (513)
++..|
T Consensus 85 ~~~~~ 89 (98)
T 3lfp_A 85 ERKRI 89 (98)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99988
No 350
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=46.27 E-value=23 Score=35.75 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=33.1
Q ss_pred CCHHHHHHHhH---HhcCCCCCCCCHHHHHHHh--CCCHHHHHHHHH
Q 010338 452 LKPKESLVIRQ---RFGLDGKGDRTLGEIAGNL--NISREMVRKHEV 493 (513)
Q Consensus 452 L~~rEr~VL~l---RyGL~~~~~~Tl~EIA~~L--gISrerVRqi~~ 493 (513)
|++|++.||.. .| +...++-+.+++|+.+ |||..|||+-+.
T Consensus 15 l~eR~~~IL~~i~~~y-l~~~~pV~s~~La~~~~l~VS~aTIRrDL~ 60 (338)
T 1stz_A 15 LNDRQRKVLYCIVREY-IENKKPVSSQRVLEVSNIEFSSATIRNDMK 60 (338)
T ss_dssp CCHHHHHHHHHHHHHH-HHHCSCBCHHHHHHHSCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCccHHHHHHHhCCCCCHHHHHHHHH
Confidence 89999999983 01 1225789999999999 999999998765
No 351
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=46.18 E-value=46 Score=23.87 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=35.4
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKL 499 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKL 499 (513)
+++.+..+|...|-.+.+. .....+||..+|+|...|......-..|.
T Consensus 9 ~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 9 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 6778888888888533322 23467899999999999998887665554
No 352
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=46.18 E-value=18 Score=34.07 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=26.7
Q ss_pred HHHhHHhcCCCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 458 LVIRQRFGLDGKGDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 458 ~VL~lRyGL~~~~~~-Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
.|+...| ..++.. |-.++|+.||||+..|| .||+.|..
T Consensus 16 ~I~~g~l--~pG~~LpsE~~La~~lgVSRtpVR----EAL~~L~~ 54 (239)
T 2di3_A 16 ELRSGRL--KIGDHLPSERALSETLGVSRSSLR----EALRVLEA 54 (239)
T ss_dssp HHHHTSS--CTTCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHhCCC--CCCCcCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3444444 234567 67899999999999999 66666653
No 353
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=45.94 E-value=14 Score=29.64 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=18.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 010338 471 DRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
+.+..+.|+.||||+.++...+.
T Consensus 54 ~GN~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 54 DRNVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 44688999999999999876543
No 354
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=45.51 E-value=39 Score=25.86 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=40.6
Q ss_pred cCCHHHHHHHhHHh---cCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010338 451 SLKPKESLVIRQRF---GLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504 (513)
Q Consensus 451 ~L~~rEr~VL~lRy---GL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~ 504 (513)
.+++.+..+|...| ..+.+. ...-.+||..+|+|...|..+......+.|....
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 36788888888877 332221 2345789999999999999999998888876544
No 355
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=45.40 E-value=35 Score=25.81 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=39.0
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~ 504 (513)
+++.+..+|...|-.+.+. .....+||..+|+|...|..+...-..+.|....
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 5667777777777433221 2346789999999999999999888888876543
No 356
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=45.40 E-value=49 Score=30.98 Aligned_cols=27 Identities=33% Similarity=0.250 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+.|.++||..+|+|+++|. |++++|++
T Consensus 217 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 243 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVG----RILKMLED 243 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5899999999999999988 55666664
No 357
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=45.39 E-value=4.4 Score=37.26 Aligned_cols=30 Identities=7% Similarity=-0.012 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVKGLMKL 499 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~rALkKL 499 (513)
.++|..+||+.||+|+.||.+++...-..+
T Consensus 157 ~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~~ 186 (193)
T 3plo_X 157 QGIPRKQVALIYDVALSTLYKKHPAKRAHI 186 (193)
T ss_dssp ------------------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHhhhHHhh
Confidence 579999999999999999998876544433
No 358
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=45.34 E-value=28 Score=25.54 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=35.1
Q ss_pred cCCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMK 498 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkK 498 (513)
.+++.+..+|...|..+.+. .....+||..+|+|...|.........+
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 46788888888888543322 2346789999999999999988766554
No 359
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=45.26 E-value=17 Score=27.94 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=19.5
Q ss_pred CHHHHHHHhCCCHHHHHHHHH
Q 010338 473 TLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 473 Tl~EIA~~LgISrerVRqi~~ 493 (513)
|+.+.|+.||||..+|++.+.
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 899999999999999999863
No 360
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=45.18 E-value=16 Score=33.98 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
..|.++||..+|+|+++|. |++++|++
T Consensus 193 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 219 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVT----RLLGDLRE 219 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHHCCcHHHHH----HHHHHHHH
Confidence 6899999999999999998 55666664
No 361
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=45.07 E-value=47 Score=28.06 Aligned_cols=51 Identities=10% Similarity=-0.125 Sum_probs=42.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhCc
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~L-----gISrerVRqi~~rALkKLR~~ 502 (513)
.|+++|..+|.+-. ...+...|.++|.+.+ ..+..+|+....+-.+||...
T Consensus 43 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~~ 98 (121)
T 2hwv_A 43 ELTHREFELLYYLA-KHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDS 98 (121)
T ss_dssp ECCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCSS
T ss_pred ECCHHHHHHHHHHH-HcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHhhc
Confidence 58999999987755 2335679999999998 688999999999999999753
No 362
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=44.96 E-value=15 Score=34.88 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=28.1
Q ss_pred HHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 458 LVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 458 ~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
.|+...| ..++..+..++|+.||||+..|| .||+.|..
T Consensus 40 ~I~~g~l--~pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 77 (239)
T 2hs5_A 40 AIIDGTF--RPGARLSEPDICAALDVSRNTVR----EAFQILIE 77 (239)
T ss_dssp HHHHTSS--CTTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHcCCC--CCcCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4444444 23456799999999999999999 67777763
No 363
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=44.68 E-value=46 Score=31.93 Aligned_cols=44 Identities=9% Similarity=-0.063 Sum_probs=34.5
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.|++.|-.||..-+.- ++.+.|..|||+.++++.++|..+..+=
T Consensus 155 gLt~~q~~vL~~L~~~-~~~~~t~~eLa~~l~i~~~tvt~~v~rL 198 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQ-NKNIVLLKDLIETIHHKYPQTVRALNNL 198 (250)
T ss_dssp SSCHHHHHHHHHHHTT-TTCCEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC-CCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 4999999998877631 1135899999999999999998766553
No 364
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=44.61 E-value=39 Score=24.51 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=36.1
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLK 500 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR 500 (513)
+++.+..+|...|..+.+. .....+||..+|+|...|......-..+.|
T Consensus 7 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 56 (58)
T 1ig7_A 7 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 56 (58)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhc
Confidence 5777778888877543221 234678999999999999999877766655
No 365
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=44.41 E-value=53 Score=28.53 Aligned_cols=48 Identities=23% Similarity=0.179 Sum_probs=36.1
Q ss_pred hcCCHHHHHHHhHHhcC-C--CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 450 DSLKPKESLVIRQRFGL-D--GKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL-~--~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
..+++.++.|....-|- | |+=..++.|||..+|++.+.|. ++++.|++
T Consensus 15 ~~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve----~vL~~iQ~ 65 (130)
T 2k9m_A 15 LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELE----KVRQKVLR 65 (130)
T ss_dssp HHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHH----HHHHHHhc
Confidence 36899999887765554 2 4456799999999999999886 45555654
No 366
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=44.19 E-value=39 Score=24.79 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=37.0
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+++.+..+|...|..+.+. .....+||..+|+|...|......-..+.|.
T Consensus 8 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 8 FTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 5777778888887543322 2346789999999999999998777766653
No 367
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=44.09 E-value=24 Score=33.79 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
..+.|..+||+.+|+|+++|+..+.
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~ 200 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKIS 200 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHH
Confidence 4689999999999999999996554
No 368
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=43.93 E-value=26 Score=33.46 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=23.8
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 469 KGDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 469 ~~~~-Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+..+ |..|+|+.||||+.+|| +|+..|..
T Consensus 33 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 62 (248)
T 3f8m_A 33 GDPFPAEREIAEQFEVARETVR----QALRELLI 62 (248)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4556 99999999999999999 56666653
No 369
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=43.93 E-value=22 Score=30.36 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.6
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 468 GKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 468 ~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
|+.+.|+.+||+..|||+.++..+
T Consensus 21 G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (170)
T 3egq_A 21 PPHEVSIEEIAREAKVSKSLIFYH 44 (170)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred CCccCcHHHHHHHhCCCchhHHHH
Confidence 467899999999999999999875
No 370
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.44 E-value=34 Score=26.52 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=39.5
Q ss_pred CCHHHHHHHhHHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010338 452 LKPKESLVIRQRFGLDGK-GDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~-~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~ 504 (513)
.++.+..+|...|-...+ ......+||..+|++...|..+...-..+.|+...
T Consensus 15 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 15 KSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 566666777776643332 23456799999999999999999988888887544
No 371
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=43.40 E-value=16 Score=33.89 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=28.2
Q ss_pred HHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 458 LVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 458 ~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
.|+...| ..++.++..++|+.||||+..|| .||+.|..
T Consensus 28 ~I~~g~l--~pG~~L~E~~La~~lgVSRtpVR----EAl~~L~~ 65 (222)
T 3ihu_A 28 GLELGTF--VPGQRLVETDLVAHFGVGRNSVR----EALQRLAA 65 (222)
T ss_dssp HHHHTSS--CTTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHhCCC--CCCCccCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3444444 22466889999999999999999 67777763
No 372
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=43.12 E-value=17 Score=33.46 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=29.8
Q ss_pred CCHHHHHHHhHHhcCC--C---CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 452 LKPKESLVIRQRFGLD--G---KGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~--~---~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
.+..+|..-.+..-.. | .-..|.++||..+|+|+++|. |++++|++
T Consensus 162 ~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvs----R~l~~l~~ 212 (232)
T 1zyb_A 162 LDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNIS----KTLNELQD 212 (232)
T ss_dssp CSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHH----HHHHHHHH
Confidence 4667766543322100 0 124799999999999999987 55566654
No 373
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=43.00 E-value=33 Score=32.08 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
..++|..++|+.+|||.++|++++.
T Consensus 41 ~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 41 QHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCChHHHHHHHh
Confidence 3578999999999999999999975
No 374
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=42.86 E-value=24 Score=30.92 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
....|.+|||+.+|+|+..|+++..+
T Consensus 26 ~~~~s~~~IA~~~~i~~~~l~kil~~ 51 (143)
T 3t8r_A 26 QGCISLKSIAEENNLSDLYLEQLVGP 51 (143)
T ss_dssp SCCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 34689999999999999888866543
No 375
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=42.58 E-value=48 Score=26.21 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=40.6
Q ss_pred cCCHHHHHHHhHHh---cCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010338 451 SLKPKESLVIRQRF---GLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504 (513)
Q Consensus 451 ~L~~rEr~VL~lRy---GL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~ 504 (513)
.+++.+..+|...| -...+. .....+||..+|+|...|..+......+.|....
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 36788888888887 322221 1245789999999999999999999988886543
No 376
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=42.51 E-value=16 Score=30.84 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=28.4
Q ss_pred HHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010338 458 LVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 496 (513)
Q Consensus 458 ~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rAL 496 (513)
.||.... ...+|+.|.|..+|||.+.|.+++....
T Consensus 41 ~VV~~v~----~g~lS~~EAa~ry~Is~~ei~~W~r~y~ 75 (101)
T 2oa4_A 41 AVVRGVI----YGLITLAEAKQTYGLSDEEFNSWVSALA 75 (101)
T ss_dssp HHHHHHH----HTTCCHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHH----hCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3555554 3689999999999999999999988763
No 377
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=41.97 E-value=49 Score=27.53 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
.++|+.+||+.||-..++|..-..+.-+.++.
T Consensus 49 t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 49 TDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999877777666654
No 378
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=41.87 E-value=22 Score=33.74 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=22.3
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 470 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 470 ~~~-Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
... |..|+|+.||||+.+|| +|+..|..
T Consensus 31 ~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 59 (236)
T 3edp_A 31 MLMPNETALQEIYSSSRTTIR----RAVDLLVE 59 (236)
T ss_dssp C--CCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 455 89999999999999999 67777764
No 379
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=41.63 E-value=19 Score=31.10 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNL-NISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~L-gISrerVRqi~~r 494 (513)
.++++.||++.+ |||..+|.+++.+
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~ 72 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQA 72 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 579999999999 7999999876554
No 380
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.46 E-value=45 Score=26.05 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=37.0
Q ss_pred CCHHHHHHHhHHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010338 452 LKPKESLVIRQRFGLDGK-GDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 503 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~-~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~ 503 (513)
+++.|..+|...|-...+ ......+||..+|++...|..+...-..|.|...
T Consensus 24 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 24 FTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 555566666666643222 1234678999999999999999988888888654
No 381
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=41.44 E-value=23 Score=33.63 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=23.6
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 469 KGDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 469 ~~~~-Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
++.. |..++|+.||||+.+|| +|+..|..
T Consensus 26 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 55 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTIT----KSLELLEQ 55 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3456 89999999999999999 56776764
No 382
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.31 E-value=44 Score=25.29 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=37.0
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
+++.+..+|...|-.+.+. .....+||..+|+|...|..+...-..+.|..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 14 FTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 5667777777777432221 23467899999999999999998877777653
No 383
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=41.19 E-value=31 Score=31.00 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=28.8
Q ss_pred cCCHHHHHHHhHHhcC---CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGL---DGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL---~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
+|+.+....|+.-.-| .+....|.++||+.+|+|+..|+++..+
T Consensus 21 ~lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~ 67 (159)
T 3lwf_A 21 KITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGP 67 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred eCchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3455554444432222 2345789999999999999988866543
No 384
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=41.04 E-value=44 Score=25.33 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=36.7
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+++.+..+|...|-.+.+. .....+||..+|++...|..+...-..+.|.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr 64 (70)
T 2e1o_A 14 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 64 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCC
Confidence 5677777777777433221 2346789999999999999998877777664
No 385
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=40.99 E-value=23 Score=33.65 Aligned_cols=29 Identities=31% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 469 KGDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 469 ~~~~-Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
++.. |..|+|+.||||+.+|| +|+..|..
T Consensus 31 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 60 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVR----QALSNLVN 60 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3455 89999999999999999 46666764
No 386
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=40.87 E-value=28 Score=35.28 Aligned_cols=34 Identities=6% Similarity=-0.040 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 503 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~ 503 (513)
...|.+|||+..|||..|||+....-+..+-...
T Consensus 291 ~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~ 324 (345)
T 4bbr_M 291 IPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLV 324 (345)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999988776665555433
No 387
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=40.63 E-value=29 Score=28.89 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
.++.|+.+||+.+|+|+.++.+...
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk 45 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLR 45 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3579999999999999998877643
No 388
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=40.52 E-value=61 Score=24.45 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=38.6
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
+++.+..+|...|..+.+. .....+||..+|+|...|......-..+.|..
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 9 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 5777788888887544332 34567999999999999999987777776653
No 389
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=40.41 E-value=13 Score=32.65 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=36.1
Q ss_pred cCCHHHHHHHhHHh-cCCCCCCCCHHHHHH----Hh--CCCHHHHHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRF-GLDGKGDRTLGEIAG----NL--NISREMVRKHEVKGLMKL 499 (513)
Q Consensus 451 ~L~~rEr~VL~lRy-GL~~~~~~Tl~EIA~----~L--gISrerVRqi~~rALkKL 499 (513)
.|+..|+.-|+.+| -- ...+|..+||. .| |||+++|+.++..--.-|
T Consensus 11 ~lT~~qK~~i~~~~~~~--~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~~l 64 (144)
T 1iuf_A 11 AITEHEKRALRHYFFQL--QNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSYL 64 (144)
T ss_dssp CCCSHHHHHHHHHHHSS--SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHHHh
Confidence 47777777777776 22 34789999999 99 999999999997754433
No 390
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=40.10 E-value=27 Score=36.07 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 440 LLRLALDDVLDS--LKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 440 ~l~~~L~~aL~~--L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.+...+...+.. |++.|-.||..-+.- ..+++|..|||+.++++..+|..++.+
T Consensus 388 ~~~~~~~~~~~~~~lt~~q~~vl~~l~~~-~~~~~~~~~l~~~~~~~~~~~t~~~~~ 443 (487)
T 1hsj_A 388 QVKKFFRDTKKKFNLNYEEIYILNHILRS-ESNEISSKEIAKCSEFKPYYLTKALQK 443 (487)
T ss_dssp HHHHHHHHHSSSCCCCHHHHHHHHHHHTC-SCSEEEHHHHHHSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhC-CCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 334445555543 999999998877631 115799999999999999998855443
No 391
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.98 E-value=45 Score=25.90 Aligned_cols=50 Identities=10% Similarity=0.258 Sum_probs=36.5
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+++.+..+|...|-...+. .....+||..+|++...|..+...-..+.|.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (80)
T 2dmq_A 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 64 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHH
Confidence 5667777777777433221 2346789999999999999998887777765
No 392
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=39.94 E-value=19 Score=31.43 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=28.9
Q ss_pred CHHHHHHHhHHhcCCCCCCCCHHHHHHHhCC-CHHHHHHHHHH
Q 010338 453 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNI-SREMVRKHEVK 494 (513)
Q Consensus 453 ~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgI-SrerVRqi~~r 494 (513)
++.-.+-|..+. ..|+|+.+|+...|| |++||..++.+
T Consensus 14 t~e~~e~I~~~i----~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 14 MPEVADDICSLL----SSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp CTTHHHHHHHHH----HTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----HCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 333334455555 368999999999999 99999999876
No 393
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=39.82 E-value=42 Score=25.66 Aligned_cols=54 Identities=4% Similarity=0.002 Sum_probs=39.0
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRV 505 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~~ 505 (513)
.++.+..+|...|-...+. .....+||..+|++...|..+...-..|.|+....
T Consensus 13 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 13 KTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 5566666776666432221 23567899999999999999999888888875443
No 394
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=39.79 E-value=45 Score=30.30 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHhcCCC-HHHHHHHHH
Q 010338 364 EIQRAKLELLFELKRVPTDEEIIQGVNIS-PERYREVMK 401 (513)
Q Consensus 364 ki~ka~~~L~~elgR~PT~eELA~~lgis-~e~v~~~l~ 401 (513)
.+....+++..+.|-.||..|||+.+|++ ...+..++.
T Consensus 10 ~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 10 EVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 34444455566778889999999999999 888877764
No 395
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=39.78 E-value=21 Score=30.85 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi 491 (513)
+...|+.+||+..|||+.++..+
T Consensus 20 ~~~~ti~~Ia~~agvs~~t~Y~~ 42 (194)
T 3bqz_B 20 YNATTTGEIVKLSESSKGNLYYH 42 (194)
T ss_dssp TTTCCHHHHHHHTTCCHHHHHHH
T ss_pred CccCCHHHHHHHhCCCchhHHHh
Confidence 68899999999999999999765
No 396
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=39.51 E-value=22 Score=31.07 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.1
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +.+.|+.+||+..|||+.++..+
T Consensus 21 ~~~G---~~~~t~~~IA~~agvs~~tlY~~ 47 (192)
T 2zcm_A 21 SEKG---YDGTTLDDISKSVNIKKASLYYH 47 (192)
T ss_dssp HHHC---TTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHcC---cccCCHHHHHHHhCCChHHHHHH
Confidence 4555 68899999999999999999864
No 397
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.42 E-value=41 Score=25.51 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=38.4
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 503 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~ 503 (513)
+++.+..+|...|-.+.+. .....+||..+|+|...|..+...-..+.|...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 14 YSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 5677777888888432221 134678999999999999999988887776543
No 398
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=39.39 E-value=59 Score=25.35 Aligned_cols=52 Identities=6% Similarity=0.059 Sum_probs=38.4
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 503 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~ 503 (513)
+++.+..+|...|-...+. .....+||..+|++...|..+...-..|.|...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 14 FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 6777888888888433221 134678999999999999999877777776543
No 399
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=39.36 E-value=28 Score=30.55 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
....|.+|||+.+|+|+..|+++..
T Consensus 28 ~~~~~~~~iA~~~~i~~~~l~kil~ 52 (149)
T 1ylf_A 28 SSLCTSDYMAESVNTNPVVIRKIMS 52 (149)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3578999999999999998886654
No 400
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=39.27 E-value=52 Score=24.38 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=36.8
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+++.+..+|...|....+. .....+||..+|+|...|......-..+.|.
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 60 (63)
T 2h1k_A 10 YTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60 (63)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhh
Confidence 5677778887777543322 2346789999999999999998777776654
No 401
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=39.22 E-value=37 Score=32.43 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|+.|||+.+|+++++|.+++..
T Consensus 27 ~~~~~~~eia~~~gl~~stv~r~l~~ 52 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILLT 52 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35799999999999999999987653
No 402
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=39.15 E-value=43 Score=31.94 Aligned_cols=106 Identities=11% Similarity=0.115 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHhccCccc-ccCCCCCchhhhhccccCCCCCCchhhhHHHHHHH
Q 010338 365 IQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILS-LHSRHGVTQEEFINGITDVDGVENENQRQPALLRL 443 (513)
Q Consensus 365 i~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~~~~~~S-Ld~~~~~~~~e~~d~l~d~~~~~~ee~~~~~~l~~ 443 (513)
+......+..--|.+-+.++||+.++++.+++..++........ -+... ++.. +. +. -......++..
T Consensus 16 l~~~iEAlLf~a~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGi-----el~~-v~--~g---y~l~T~~e~~~ 84 (219)
T 2z99_A 16 LKRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGI-----DLRH-TS--EG---WRMYTRARFAP 84 (219)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSE-----EEEE-ET--TE---EEEEECGGGHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCE-----EEEE-EC--CE---EEEEEcHHHHH
Confidence 34445555666788899999999999999999888764322110 00000 0000 00 00 00000111122
Q ss_pred HHHHHH-----hcCCHHHHHHHhH-HhcCCCCCCCCHHHHHHHhCCCH
Q 010338 444 ALDDVL-----DSLKPKESLVIRQ-RFGLDGKGDRTLGEIAGNLNISR 485 (513)
Q Consensus 444 ~L~~aL-----~~L~~rEr~VL~l-RyGL~~~~~~Tl~EIA~~LgISr 485 (513)
.|..++ ..|+.-.-++|.. .| .++.|-.||+++.|++.
T Consensus 85 ~v~~~~~~~~~~~Ls~aaLEtLaiIAy----~QPITR~eI~~irGv~~ 128 (219)
T 2z99_A 85 YVEKLLLDGARTKLTRAALETLAVVAY----RQPVTRARVSAVRGVNV 128 (219)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHH----HCSEEHHHHHHHHTSCC
T ss_pred HHHHHhcccccCccCHHHHHHHHHHHH----cCCcCHHHHHHHHCCCH
Confidence 222322 3588888777766 44 57999999999999995
No 403
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=39.01 E-value=65 Score=24.24 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=38.1
Q ss_pred CCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 452 LKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~-~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
+++.+..+|...|....+.. ....+||..+|+|...|..+...-..+.|..
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 9 FTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 67788888888885433221 3457899999999999999987777776643
No 404
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=38.88 E-value=61 Score=25.69 Aligned_cols=51 Identities=18% Similarity=0.076 Sum_probs=41.6
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhCc
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~L-----gISrerVRqi~~rALkKLR~~ 502 (513)
.|+++|..+|.+-. ...+...|.++|.+.+ ..+..+|.....+-.+||...
T Consensus 22 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~ 77 (96)
T 3rjp_A 22 SLTKREYDLLNILM-TNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIP 77 (96)
T ss_dssp ECCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHCCT
T ss_pred EcCHHHHHHHHHHH-hCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhccc
Confidence 58999999987765 2334678999999988 378899999999999999864
No 405
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=38.81 E-value=23 Score=30.92 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=23.4
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~ 492 (513)
...| +.+.|+.+||+..|||+.++..+.
T Consensus 17 ~~~G---~~~~s~~~IA~~agvsk~t~Y~~F 44 (190)
T 3vpr_A 17 TEKG---YEATSVQDLAQALGLSKAALYHHF 44 (190)
T ss_dssp HHHC---STTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHhC---cccCCHHHHHHHhCCCHHHHHHHc
Confidence 4455 688999999999999999997653
No 406
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=38.81 E-value=24 Score=30.22 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi 491 (513)
+.+.|+.+||+..|||+.++..+
T Consensus 26 ~~~~ti~~Ia~~agvs~~t~Y~~ 48 (188)
T 3qkx_A 26 LNQLSMLKLAKEANVAAGTIYLY 48 (188)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccCCHHHHHHHhCCCcchHHHH
Confidence 67899999999999999998754
No 407
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=38.76 E-value=42 Score=25.49 Aligned_cols=52 Identities=8% Similarity=0.015 Sum_probs=37.9
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 503 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~ 503 (513)
+++.+..+|...|-.+.+. .....+||..+|+|...|..+...-..+.|...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 14 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 5666777777777433221 234678999999999999999988888877643
No 408
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=38.55 E-value=50 Score=25.59 Aligned_cols=49 Identities=8% Similarity=0.072 Sum_probs=36.5
Q ss_pred CHHHHHHHhHHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 453 KPKESLVIRQRFGLDGK-GDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 453 ~~rEr~VL~lRyGL~~~-~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+..|..+|...|....+ ......+||..+|+|...|+.+...-..|+|+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 45566666666644322 23567899999999999999999988888774
No 409
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=38.52 E-value=41 Score=25.13 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=38.1
Q ss_pred CCHHHHHHHhHHhcCCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 452 LKPKESLVIRQRFGLDGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~~-~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
+++.+..+|...|..+.+.. ....+||..+|+|...|......-..+.|..
T Consensus 10 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 56777788887775433221 2457899999999999999998888777653
No 410
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=38.48 E-value=31 Score=28.66 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=20.2
Q ss_pred CCCC--HHHHHHHh-CCCHHHHHHHHHH
Q 010338 470 GDRT--LGEIAGNL-NISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~T--l~EIA~~L-gISrerVRqi~~r 494 (513)
.+++ +.||++.+ |||..++.+++.+
T Consensus 39 g~~~~~~~eL~~~l~gis~~~ls~~L~~ 66 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGISSTILSRRIKD 66 (111)
T ss_dssp SSSCBCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence 3566 99999999 9999998866543
No 411
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=38.39 E-value=9.7 Score=31.63 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=34.5
Q ss_pred HHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 010338 447 DVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN----ISREMVRKHEVKG 495 (513)
Q Consensus 447 ~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~Lg----ISrerVRqi~~rA 495 (513)
.....|++.|..||..-+- .++.|..||++.++ ++..+|..++.+=
T Consensus 28 ~~~~~LT~~e~~VL~~L~~---~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rL 77 (99)
T 2k4b_A 28 EVEFNVSNAELIVMRVIWS---LGEARVDEIYAQIPQELEWSLATVKTLLGRL 77 (99)
T ss_dssp ---CCCCCSCSHHHHHHHH---HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHh---CCCCCHHHHHHHHhcccCCCHhhHHHHHHHH
Confidence 3344699999999887763 34799999999997 5789998766654
No 412
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=38.13 E-value=24 Score=30.51 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.0
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +.+.|+.+||+..|||+.++..+
T Consensus 16 ~~~G---y~~~s~~~Ia~~agvskgtlY~~ 42 (179)
T 2eh3_A 16 FEKG---YQGTSVEEIVKRANLSKGAFYFH 42 (179)
T ss_dssp HHHC---STTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcC---CccCCHHHHHHHhCCCcHHHHHH
Confidence 4455 78999999999999999999764
No 413
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=37.87 E-value=64 Score=24.26 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=23.1
Q ss_pred hCCCCCHHHHHHhcCCCHHHHHHHHHhc
Q 010338 376 LKRVPTDEEIIQGVNISPERYREVMKAS 403 (513)
Q Consensus 376 lgR~PT~eELA~~lgis~e~v~~~l~~~ 403 (513)
+...-|..|||+.+|+|...|...+...
T Consensus 28 ~~~g~s~~eIA~~l~is~~tV~~~~~r~ 55 (79)
T 1x3u_A 28 VVAGLPNKSIAYDLDISPRTVEVHRANV 55 (79)
T ss_dssp HTTTCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4566799999999999999998776543
No 414
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=37.85 E-value=24 Score=31.00 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=23.9
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~ 492 (513)
...| +...|..+||+..|||+.++..+.
T Consensus 26 ~e~G---~~~~t~~~IA~~agvsk~tlY~~F 53 (192)
T 2fq4_A 26 LESG---FKAVTVDKIAERAKVSKATIYKWW 53 (192)
T ss_dssp HHHC---TTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHcC---cccccHHHHHHHcCCCHHHHHHHC
Confidence 4555 688999999999999999998764
No 415
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=37.85 E-value=32 Score=26.70 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=34.8
Q ss_pred CCHHHHHHHhHHhcCCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010338 452 LKPKESLVIRQRFGLDGK-GDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 503 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~-~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~ 503 (513)
+++.+..+|...|-...+ ......+||..+|++...|..+...-..+.|...
T Consensus 24 ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 24 ITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 344444455555532211 1223578999999999999999998888888653
No 416
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=37.84 E-value=27 Score=33.92 Aligned_cols=28 Identities=11% Similarity=0.046 Sum_probs=23.4
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 470 GDR-TLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 470 ~~~-Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
..+ |..++|+.||||+.+|| +|+..|..
T Consensus 51 ~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 79 (272)
T 3eet_A 51 TRLPSQARIREEYGVSDTVAL----EARKVLMA 79 (272)
T ss_dssp SBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 456 99999999999999999 67777764
No 417
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=37.64 E-value=54 Score=28.51 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=21.5
Q ss_pred CCHHHHHHhcCCCHHHHHHHHHhcc
Q 010338 380 PTDEEIIQGVNISPERYREVMKASK 404 (513)
Q Consensus 380 PT~eELA~~lgis~e~v~~~l~~~~ 404 (513)
-+..+||..+|++...|..+++...
T Consensus 42 ~s~~~IA~~lgis~~TV~rwl~r~~ 66 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4788999999999999999987643
No 418
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=37.61 E-value=58 Score=24.77 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=38.8
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~ 504 (513)
+++.+..+|...|-.+.+. .....+||..+|++...|..+...-..+.|...+
T Consensus 16 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 16 FTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 4666666776666433222 2356789999999999999999999998887544
No 419
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=37.60 E-value=21 Score=31.99 Aligned_cols=22 Identities=9% Similarity=0.196 Sum_probs=20.8
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 010338 473 TLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 473 Tl~EIA~~LgISrerVRqi~~r 494 (513)
|..|+|+.+|+|+++|++++..
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 9999999999999999999864
No 420
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=37.60 E-value=27 Score=28.89 Aligned_cols=36 Identities=17% Similarity=0.039 Sum_probs=24.2
Q ss_pred HHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 455 KESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 455 rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
-|+.+|..-+- ..+.+..+.|+.||||+.+++..+.
T Consensus 58 ~Er~~I~~aL~---~~~gn~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 58 VEQPLLDMVMQ---YTLGNQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp HHHHHHHHHHH---HTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhCCCHHHHHHHhCCCHHHHHHHHH
Confidence 35555544331 1245788999999999999986544
No 421
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=37.10 E-value=26 Score=33.23 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|+.|||+.+|+++++|.+++..
T Consensus 20 ~~~s~~ela~~~gl~~stv~r~l~~ 44 (241)
T 2xrn_A 20 HGLSLAAIAQLVGLPRSTVQRIINA 44 (241)
T ss_dssp TCEEHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4799999999999999999998864
No 422
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=37.07 E-value=25 Score=26.22 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=35.0
Q ss_pred CCHHHHHHHhHHh---cCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 452 LKPKESLVIRQRF---GLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 452 L~~rEr~VL~lRy---GL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+++.+..+|...| ....+. .....+||..+|+|...|.........+.|+
T Consensus 10 ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 10 MNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp STTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 5666777777777 322221 2345689999999999999998877666553
No 423
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=36.99 E-value=36 Score=32.62 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|+.|||+.+|+++++|.+++..
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~t 61 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVAT 61 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 35799999999999999999987653
No 424
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=36.70 E-value=30 Score=29.22 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.++.|+.+||+.+|+|+.++.++..+.
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 357999999999999999988877664
No 425
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=36.46 E-value=61 Score=25.39 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=39.3
Q ss_pred cCCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010338 451 SLKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 503 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~ 503 (513)
.+++.+..+|...|..+.+- .....+||..+|++...|......-..|.|+..
T Consensus 26 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 26 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 36777777787777433221 234678999999999999999988888887653
No 426
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=36.46 E-value=29 Score=32.99 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
.++|+.|||+.+|+++++|.+++..
T Consensus 22 ~~~~~~ela~~~gl~~stv~r~l~~ 46 (249)
T 1mkm_A 22 GDVSVSEIAEKFNMSVSNAYKYMVV 46 (249)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4799999999999999999987653
No 427
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=36.44 E-value=47 Score=27.79 Aligned_cols=50 Identities=12% Similarity=-0.081 Sum_probs=41.2
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhC
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~L-----gISrerVRqi~~rALkKLR~ 501 (513)
.|+++|..+|.+-. ...+...|.++|.+.+ ..+..+|+....+-.+||..
T Consensus 41 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSLLI-SKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHHHH-HHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHH-HcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 48999999887755 2234678999999999 67899999999999999974
No 428
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=36.43 E-value=61 Score=27.29 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVKGL 496 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~rAL 496 (513)
.+.+..|+|..+|++...++.++....
T Consensus 19 ~p~~~~~la~~~~~~~~~~~~~l~~l~ 45 (121)
T 2pjp_A 19 EPWWVRDLAKETGTDEQAMRLTLRQAA 45 (121)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 577999999999999999987766553
No 429
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=36.37 E-value=28 Score=30.29 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=31.9
Q ss_pred HHHHHhcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-CCCHHHHHHHHH
Q 010338 445 LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-NISREMVRKHEV 493 (513)
Q Consensus 445 L~~aL~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~L-gISrerVRqi~~ 493 (513)
+..+|+-|..+-+..|..... ..++++.||++.+ |||..++.+.+.
T Consensus 16 i~~~l~~lg~kW~l~IL~~L~---~g~~rf~eL~~~l~gIs~~~Ls~~L~ 62 (131)
T 4a5n_A 16 VEFTLDVIGGKWKGILFYHMI---DGKKRFNEFRRICPSITQRMLTLQLR 62 (131)
T ss_dssp HHHHHHHHCSSSHHHHHHHHT---TSCBCHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCcCHHHHHHHHh---cCCcCHHHHHHHhcccCHHHHHHHHH
Confidence 455666676666554433321 3589999999999 999888876553
No 430
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=36.11 E-value=21 Score=32.98 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCH-HHHHHHHHHHHHHHhC
Q 010338 471 DRTLGEIAGNLNISR-EMVRKHEVKGLMKLKH 501 (513)
Q Consensus 471 ~~Tl~EIA~~LgISr-erVRqi~~rALkKLR~ 501 (513)
+.|.++||..+|+|+ ++|. |++++|++
T Consensus 169 ~~t~~~lA~~lG~sr~etvs----R~l~~l~~ 196 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVS----RIISKLKQ 196 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHH----HHHHHHHH
Confidence 689999999999999 7888 55566654
No 431
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=35.95 E-value=15 Score=32.55 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVKGLM 497 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~rALk 497 (513)
.+|..|+|+.+|||..++|.++...|-
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye~~Gll 42 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDKQGLF 42 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHTTCC
T ss_pred ceeHHHHHHHHCcCHHHHHHHHHCCCC
Confidence 478999999999999999999988763
No 432
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=35.94 E-value=27 Score=30.69 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 468 GKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 468 ~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
|+.+.|+.+||+..|||+.++..+
T Consensus 31 G~~~~ti~~IA~~agvs~~t~Y~~ 54 (212)
T 3knw_A 31 GFVGVGLQEILKTSGVPKGSFYHY 54 (212)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CCccCCHHHHHHHhCCChHHHHHH
No 433
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=35.88 E-value=22 Score=28.75 Aligned_cols=80 Identities=9% Similarity=0.076 Sum_probs=40.2
Q ss_pred CCHHHHHHhcCCCHHHHHHHHHhccCcccccCC------CCCchhhhhccccCCCCCCchhhhHHHHHHHHHHHHH-hcC
Q 010338 380 PTDEEIIQGVNISPERYREVMKASKPILSLHSR------HGVTQEEFINGITDVDGVENENQRQPALLRLALDDVL-DSL 452 (513)
Q Consensus 380 PT~eELA~~lgis~e~v~~~l~~~~~~~SLd~~------~~~~~~e~~d~l~d~~~~~~ee~~~~~~l~~~L~~aL-~~L 452 (513)
-|..++|+.+|++...|..+..-.....+++.. .+.+.+.++....+ ..+.... .......+...+ ..|
T Consensus 15 ltq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~~~l~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~l 90 (111)
T 1b0n_A 15 YSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHE---TEYDGQL-DSEWEKLVRDAMTSGV 90 (111)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHCCTTC---C-----C-CHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHHHhcCCCC---CCCcccc-cHHHHHHHHHHHHcCC
Confidence 467889999999998888887651222232211 11122222221111 0111111 112234455667 889
Q ss_pred CHHHHHHHhHH
Q 010338 453 KPKESLVIRQR 463 (513)
Q Consensus 453 ~~rEr~VL~lR 463 (513)
++.++..|.-.
T Consensus 91 ~~e~~~~i~~~ 101 (111)
T 1b0n_A 91 SKKQFREFLDY 101 (111)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99998876543
No 434
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=35.75 E-value=73 Score=24.21 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=37.2
Q ss_pred CCHHHHHHHhHHhcC-CCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 452 LKPKESLVIRQRFGL-DGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 452 L~~rEr~VL~lRyGL-~~~~~-~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+++.+..+|...|-- ..+.. ....+||..+|+|...|..+...-..+.|.
T Consensus 8 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk 59 (72)
T 1uhs_A 8 MTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 59 (72)
T ss_dssp CCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhh
Confidence 677888888888842 32221 246799999999999999998777666664
No 435
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=35.71 E-value=1.9e+02 Score=24.12 Aligned_cols=24 Identities=4% Similarity=0.167 Sum_probs=20.7
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 379 VPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 379 ~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
..|..+||+.++++...+..++..
T Consensus 54 ~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 54 GVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp CCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHH
Confidence 349999999999999999888764
No 436
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=35.53 E-value=27 Score=30.46 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=23.2
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +.+.|..+||+..|||+.++..+
T Consensus 26 ~~~G---~~~~t~~~Ia~~agvs~~t~Y~~ 52 (202)
T 3lwj_A 26 IEKG---YYNTSIRDIIALSEVGTGTFYNY 52 (202)
T ss_dssp HHHC---TTTCCHHHHHHHHCSCHHHHHHH
T ss_pred HHcC---cccCCHHHHHHHhCCCchhHHHH
Confidence 4555 67899999999999999999864
No 437
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=35.47 E-value=16 Score=32.72 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 010338 470 GDRTLGEIAGNLNISREMVRKHEVKGL 496 (513)
Q Consensus 470 ~~~Tl~EIA~~LgISrerVRqi~~rAL 496 (513)
..+|..|+|+.+|||..++|.++..++
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR~ye~~Gl 36 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALHFYESKGL 36 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHcCC
Confidence 357999999999999999999988765
No 438
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=35.30 E-value=48 Score=25.60 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=37.5
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~~ 504 (513)
+++.+..+|...|..+.+- .....+||..+|+|...|..+...-..|.|....
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 5666666666666432221 2345789999999999999999888888776543
No 439
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=35.23 E-value=62 Score=24.38 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=38.4
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 503 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~ 503 (513)
+++.+..+|...|..+.+. .....+||..+|+|...|..+...-..+.|...
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 9 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 5777778888887543322 234678999999999999999887777776543
No 440
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=35.09 E-value=93 Score=25.55 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.4
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHhc
Q 010338 378 RVPTDEEIIQGVNISPERYREVMKAS 403 (513)
Q Consensus 378 R~PT~eELA~~lgis~e~v~~~l~~~ 403 (513)
..-|.+|||+.+|+|..+|+..+..+
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rA 63 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKA 63 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 56799999999999999998876543
No 441
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=35.03 E-value=42 Score=32.26 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=33.1
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKG 495 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rA 495 (513)
.|++.|+.+|..-.-..++.+.+..++|+.||+|+.++...+.+-
T Consensus 244 ~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~ 288 (324)
T 1hqc_A 244 GLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPY 288 (324)
T ss_dssp CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHH
Confidence 477788777765332222457789999999999999999876663
No 442
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=34.93 E-value=60 Score=25.30 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=37.2
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
+++.+..+|...|-...+. .....+||..+|++...|..+...-..+.|..
T Consensus 25 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 25 FSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 6677777777777432221 12467899999999999999998888777753
No 443
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=34.89 E-value=29 Score=30.94 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~ 492 (513)
+.+.|+.+||+..|||+.+|..+.
T Consensus 29 ~~~~s~~~IA~~aGvskgtlY~~F 52 (210)
T 2wui_A 29 VGTTAMADLADAAGVSRGAVYGHY 52 (210)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccccCHHHHHHHhCCCHHHHHHHc
Confidence 788999999999999999998753
No 444
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=34.54 E-value=80 Score=25.02 Aligned_cols=52 Identities=21% Similarity=0.207 Sum_probs=39.4
Q ss_pred cCCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 451 SLKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
.+++.+..+|...|-...+- .....+||..+|+|...|......-..|.|..
T Consensus 34 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 34 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 47888888888888533221 13467899999999999999998888777753
No 445
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=34.49 E-value=52 Score=27.03 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=41.2
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhC
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~L-----gISrerVRqi~~rALkKLR~ 501 (513)
.|+++|..+|.+-. ...+...|.++|.+.+ ..+..+|+....+-.+||..
T Consensus 34 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 88 (110)
T 2pmu_A 34 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 88 (110)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhcc
Confidence 48999999887755 2334678999999998 57888999999999999975
No 446
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=34.18 E-value=27 Score=29.83 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHH
Q 010338 468 GKGDRTLGEIAGNLNISREMVRK 490 (513)
Q Consensus 468 ~~~~~Tl~EIA~~LgISrerVRq 490 (513)
|+...|..+||+..|||+.++..
T Consensus 29 G~~~~tv~~Ia~~agvs~~t~Y~ 51 (177)
T 3kkc_A 29 DYSKITVQDVIGLANVGRSTFYS 51 (177)
T ss_dssp CTTTCCHHHHHHHHCCCHHHHTT
T ss_pred ChhHhhHHHHHHHhCCcHhhHHH
Confidence 46889999999999999999864
No 447
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=34.16 E-value=22 Score=31.99 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEV 493 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~ 493 (513)
....|.++||+.+|||+..|+++..
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~kil~ 50 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNILS 50 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3568999999999999888886654
No 448
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=34.13 E-value=38 Score=32.50 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|+.|||+.+|+++++|.+++..
T Consensus 34 ~~~~~~~eia~~~gl~~stv~r~l~t 59 (265)
T 2ia2_A 34 NQRRTLSDVARATDLTRATARRFLLT 59 (265)
T ss_dssp CSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35799999999999999999987753
No 449
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.12 E-value=64 Score=25.87 Aligned_cols=52 Identities=8% Similarity=-0.009 Sum_probs=38.2
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 503 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~ 503 (513)
.++.|..+|...|-.+.+- .....+||..+|++...|..+...-..|.|...
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 5677777777777433222 235678999999999999999988777777543
No 450
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.07 E-value=32 Score=28.49 Aligned_cols=42 Identities=14% Similarity=0.042 Sum_probs=33.2
Q ss_pred hcCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010338 450 DSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 450 ~~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~ 492 (513)
..|++.|..|+.+..- .|.++.+.++|...+|++..+|.+++
T Consensus 33 ~~Lt~~E~lVy~~I~~-aGn~GIw~kdL~~~tnL~~~~vtkiL 74 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIED-AGNKGIWSRDVRYKSNLPLTEINKIL 74 (95)
T ss_dssp CSCSHHHHHHHHHHHH-HTTSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHhCCCHHHHHHHH
Confidence 5789999998888652 13578999999999999988776544
No 451
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=34.04 E-value=31 Score=30.32 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi 491 (513)
+.+.|+.+||+..|||+.++..+
T Consensus 30 ~~~~ti~~Ia~~agvs~~t~Y~~ 52 (189)
T 3vp5_A 30 FHEAKIMHIVKALDIPRGSFYQY 52 (189)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccccHHHHHHHhCCChHHHHHH
Confidence 67899999999999999998763
No 452
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=33.92 E-value=64 Score=21.22 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=20.9
Q ss_pred CCHHHHHHhcCCCHHHHHHHHHhc
Q 010338 380 PTDEEIIQGVNISPERYREVMKAS 403 (513)
Q Consensus 380 PT~eELA~~lgis~e~v~~~l~~~ 403 (513)
-+..+||+.+|++...|..++...
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhH
Confidence 579999999999999999887653
No 453
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=33.89 E-value=30 Score=29.98 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~ 492 (513)
+.+.|+.+||+..|||+.++..+.
T Consensus 26 ~~~~t~~~IA~~Agvs~~tly~~F 49 (194)
T 3dpj_A 26 FAQTSFVDISAAVGISRGNFYYHF 49 (194)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred cccCCHHHHHHHHCCChHHHHHHc
Confidence 688999999999999999998653
No 454
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=33.68 E-value=74 Score=25.10 Aligned_cols=51 Identities=8% Similarity=0.074 Sum_probs=36.5
Q ss_pred CCHHHHHHHhHHhcCC---CC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 452 LKPKESLVIRQRFGLD---GK-GDRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~---~~-~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
++..+..+|.-.|.-. .+ ....-.+||..+|+|...|..+...+..+.+..
T Consensus 14 ~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 5667777776655211 11 123567899999999999999999998887754
No 455
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=33.65 E-value=31 Score=30.26 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=22.9
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +.+.|+.+||+..|||+.++..+
T Consensus 28 ~~~G---~~~~ti~~Ia~~agvs~~t~Y~~ 54 (220)
T 3lhq_A 28 SQQG---VSATSLAEIANAAGVTRGAIYWH 54 (220)
T ss_dssp HHHC---STTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcC---cccCCHHHHHHHhCCCceeehhh
Confidence 3455 67899999999999999999764
No 456
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=33.63 E-value=78 Score=24.14 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=36.9
Q ss_pred CCHHHHHHHhHHhcC-CCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 452 LKPKESLVIRQRFGL-DGKGD-RTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 452 L~~rEr~VL~lRyGL-~~~~~-~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
+++.+..+|...|-. ..+.. ....+||..+|+|...|..+...-..+.|.
T Consensus 9 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk 60 (73)
T 2hi3_A 9 PTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 60 (73)
T ss_dssp CCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 677788888888842 32222 346789999999999999998777666664
No 457
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=33.54 E-value=63 Score=26.20 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=41.6
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhCc
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~L-----gISrerVRqi~~rALkKLR~~ 502 (513)
.|+++|..+|.+-. ...+...|.++|.+.+ ..+..+|.....+-.+||...
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~~ 86 (106)
T 1gxq_A 31 EMGPTEFKLLHFFM-THPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG 86 (106)
T ss_dssp CCCHHHHHHHHHHH-HSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGGG
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhccc
Confidence 48999999987765 2334678999999988 578899999999999999753
No 458
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=33.36 E-value=69 Score=25.37 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=37.1
Q ss_pred cCCHHHHHHHhHHhcC---CCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 010338 451 SLKPKESLVIRQRFGL---DGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLK 500 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL---~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR 500 (513)
.+++.+..+|...|.- ..+. .....+||..+|++...|..+......|.|
T Consensus 33 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4778888888877743 2211 124568999999999999999988877765
No 459
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=33.35 E-value=55 Score=25.09 Aligned_cols=52 Identities=12% Similarity=0.021 Sum_probs=38.2
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 503 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~~ 503 (513)
+++.+..+|...|..+.+. .....+||..+|+|...|..+...-..|.|...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 14 YTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 4666777777777433221 234578999999999999999988888888654
No 460
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=33.24 E-value=30 Score=30.64 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=23.6
Q ss_pred hHHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 461 RQRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 461 ~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
....| +.+.|+.+||+..|||+.++..+
T Consensus 23 f~~~G---~~~~s~~~IA~~aGvs~~t~Y~~ 50 (210)
T 3vib_A 23 FYRKG---IARTSLNEIAQAAGVTRDALYWH 50 (210)
T ss_dssp HHHHC---TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHhC---cccCCHHHHHHHHCcCHHHHHHH
Confidence 34555 68899999999999999999864
No 461
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=33.13 E-value=31 Score=30.44 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.0
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +.+.|..+||+..|||+.++..+
T Consensus 23 ~~~G---~~~~t~~~Ia~~Agvs~gt~Y~y 49 (204)
T 3anp_C 23 RNRG---FQETTATEIAKAAHVSRGTFFNY 49 (204)
T ss_dssp HHHC---TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHcC---cccccHHHHHHHcCCchHHHHHH
Confidence 4455 68899999999999999998764
No 462
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=33.12 E-value=33 Score=30.44 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi 491 (513)
+.+.|+.+||+..|||+.++..+
T Consensus 48 ~~~~t~~~IA~~aGvs~~t~Y~~ 70 (222)
T 3bru_A 48 YSSVGVDEILKAARVPKGSFYHY 70 (222)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CCcCcHHHHHHHhCCCcchhhhh
Confidence 68899999999999999999765
No 463
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=33.12 E-value=31 Score=30.31 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi 491 (513)
+.+.|+.+||+..|||+.++..+
T Consensus 28 ~~~~s~~~IA~~aGvs~gtlY~y 50 (194)
T 2nx4_A 28 IEAANMRDIATEAGYTNGALSHY 50 (194)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccCCHHHHHHHhCCCcchHHHh
Confidence 78999999999999999999765
No 464
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=33.07 E-value=31 Score=30.29 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=23.3
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +.+.|+.+||+..|||+.++..+
T Consensus 32 ~~~G---~~~~s~~~Ia~~agvs~~t~Y~~ 58 (212)
T 1pb6_A 32 SQFG---FHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHC---TTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHcC---cchhhHHHHHHHHCCChhHHHHh
Confidence 4555 67899999999999999999875
No 465
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=33.05 E-value=50 Score=25.91 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=36.6
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
+++.+..+|...|....+- .....+||..+|++...|..+...-..|.|..
T Consensus 29 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 29 FSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 5666666777766433221 23457899999999999999998887777654
No 466
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=32.95 E-value=25 Score=32.97 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 467 DGKGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 467 ~~~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
...++.|+.++|+.||+|+++|++.+.+
T Consensus 23 ~~~~~~s~s~aA~~L~isq~avSr~I~~ 50 (230)
T 3cta_A 23 SNRAYLTSSKLADMLGISQQSASRIIID 50 (230)
T ss_dssp SSEEECCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3446789999999999999999987754
No 467
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=32.92 E-value=38 Score=30.09 Aligned_cols=28 Identities=29% Similarity=0.283 Sum_probs=23.6
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~ 492 (513)
...| +.+.|+.+||+..|||+.++..+.
T Consensus 26 ~~~G---~~~ts~~~IA~~aGvsk~tlY~~F 53 (211)
T 3bhq_A 26 ISKG---YDGTSMEEIATKAGASKQTVYKHF 53 (211)
T ss_dssp HHHC---STTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHhC---cccCCHHHHHHHhCCCHHHHHHHc
Confidence 4565 688999999999999999997653
No 468
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=32.91 E-value=25 Score=30.26 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi 491 (513)
+.+.|+.+||+..|||+.++..+
T Consensus 26 ~~~~ti~~Ia~~agvs~~t~Y~~ 48 (194)
T 2g7s_A 26 YNSFSYADISQVVGIRNASIHHH 48 (194)
T ss_dssp GGGCCHHHHHHHHCCCHHHHHHH
T ss_pred cccCCHHHHHHHhCCCchHHHHH
Confidence 67899999999999999999765
No 469
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=32.90 E-value=64 Score=27.48 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVKGLM 497 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~rALk 497 (513)
.+++|+.|||..-|++..+|-.++.....
T Consensus 30 ~~G~sleeIA~~R~L~~~TI~~Hl~~~v~ 58 (122)
T 3iuo_A 30 DRKVALDDIAVSHGLDFPELLSEVETIVY 58 (122)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 47999999999999999999988887754
No 470
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=32.88 E-value=25 Score=30.56 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=23.6
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~ 492 (513)
...| +.+.|+.+||+..|||+.++..+.
T Consensus 22 ~~~G---~~~~t~~~Ia~~agvs~~t~Y~~F 49 (206)
T 3dew_A 22 AQKG---FYGVSIRELAQAAGASISMISYHF 49 (206)
T ss_dssp HHHC---GGGCCHHHHHHHHTCCHHHHHHHS
T ss_pred hcCC---cccCcHHHHHHHhCCCHHHHHHHc
Confidence 4555 678999999999999999998753
No 471
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.70 E-value=32 Score=30.58 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~ 492 (513)
+.+.|+.+||+..|||+.++..+.
T Consensus 26 ~~~~s~~~IA~~aGvs~~tiY~~F 49 (202)
T 2d6y_A 26 IAGARIDRIAAEARANKQLIYAYY 49 (202)
T ss_dssp TTSCCHHHHHHHHTCCHHHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHc
Confidence 688999999999999999998754
No 472
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=32.70 E-value=26 Score=30.66 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~ 492 (513)
+.+.|+.+||+..|||+.++..+.
T Consensus 25 ~~~~t~~~Ia~~agvs~~t~Y~~F 48 (195)
T 2dg7_A 25 YDNVTVTDIAERAGLTRRSYFRYF 48 (195)
T ss_dssp GGGCCHHHHHHHTTCCHHHHHHHC
T ss_pred ccccCHHHHHHHhCCCHHHHHHHc
Confidence 678999999999999999998753
No 473
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=32.65 E-value=59 Score=32.90 Aligned_cols=38 Identities=13% Similarity=-0.023 Sum_probs=29.4
Q ss_pred HHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 010338 457 SLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLM 497 (513)
Q Consensus 457 r~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALk 497 (513)
+.||.+-+- ..+.|..|||+.+|+|+.+|.++..+=+.
T Consensus 19 ~~il~~l~~---~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 19 GAVYRLIDQ---LGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HHHHHHHHS---SCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456665441 46799999999999999999998866544
No 474
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=32.51 E-value=32 Score=30.41 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=23.0
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +.+.|+.+||+..|||+.++..+
T Consensus 28 ~~~G---~~~~s~~~IA~~agvs~~tlY~~ 54 (204)
T 2ibd_A 28 AERG---LRATTVRDIADAAGILSGSLYHH 54 (204)
T ss_dssp HHHC---STTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHcC---chhcCHHHHHHHhCCCchhHHHh
Confidence 4555 68899999999999999998764
No 475
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=32.39 E-value=31 Score=30.24 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=23.0
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +.+.|+.+||+..|||+.++..+
T Consensus 31 ~~~G---~~~~ti~~Ia~~agvs~~t~Y~~ 57 (207)
T 2rae_A 31 TEQG---FDATSVDEVAEASGIARRTLFRY 57 (207)
T ss_dssp HHHC---TTTSCHHHHHHHTTSCHHHHHHH
T ss_pred HHcC---cccCCHHHHHHHhCCCcchHhhh
Confidence 3455 67899999999999999999865
No 476
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=32.39 E-value=36 Score=27.92 Aligned_cols=50 Identities=6% Similarity=-0.013 Sum_probs=41.3
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHhC
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNL-----NISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~L-----gISrerVRqi~~rALkKLR~ 501 (513)
.|+++|..+|.+-. ...+...|.++|.+.+ ..+..+|+....+-.+||..
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (110)
T 1opc_A 31 PLTSGEFAVLKALV-SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEE 85 (110)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHH-HcCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhhc
Confidence 58999999887755 2334678999999998 57888999999999999975
No 477
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=32.32 E-value=38 Score=31.82 Aligned_cols=45 Identities=27% Similarity=0.177 Sum_probs=31.8
Q ss_pred cCCHHHHHHHhHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
.+++.....|...|-| .++.+..+||+.||+|..+|+ .++++|++
T Consensus 12 ~ls~s~EdYLk~I~~L--~~~V~~~~LA~~LgvS~~SV~----~~lkkL~e 56 (200)
T 2p8t_A 12 YPEYTVEDVLAVIFLL--KEPLGRKQISERLELGEGSVR----TLLRKLSH 56 (200)
T ss_dssp --CCCHHHHHHHHHHT--TSCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--cCCccHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 3555555555555555 257899999999999999999 55666764
No 478
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.23 E-value=39 Score=29.95 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=24.4
Q ss_pred hHHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010338 461 RQRFGLDGKGDRTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 461 ~lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~ 492 (513)
....| +.+.|+.+||+..|||+.++..+.
T Consensus 24 F~~~G---y~~ts~~~IA~~aGvsk~tlY~~F 52 (202)
T 2i10_A 24 FWRQG---YEGTSITDLTKALGINPPSLYAAF 52 (202)
T ss_dssp HHHHT---TTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHhC---cccCCHHHHHHHhCCChHHHHHHh
Confidence 34565 788999999999999999998754
No 479
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=32.21 E-value=26 Score=30.15 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=22.8
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +.+.|+.+||+..|||+.++..+
T Consensus 24 ~~~G---~~~~t~~~IA~~agvs~~t~Y~~ 50 (191)
T 3on4_A 24 QKDG---YNAFSFKDIATAINIKTASIHYH 50 (191)
T ss_dssp HHHC---GGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHhC---cccCCHHHHHHHhCCCcchhhhc
Confidence 4455 67899999999999999998764
No 480
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=32.14 E-value=33 Score=30.27 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=23.1
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +.+.|+.+||+..|||+.++..+
T Consensus 25 ~~~G---~~~~ti~~Ia~~agvs~~t~Y~~ 51 (216)
T 3f0c_A 25 AHYG---LCKTTMNEIASDVGMGKASLYYY 51 (216)
T ss_dssp HHHC---SSSCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcC---CCcCCHHHHHHHhCCCHHHHHHH
Confidence 4555 67899999999999999999765
No 481
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=32.14 E-value=70 Score=24.69 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=36.3
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
+++.+..+|...|....+- .....+||..+|+|...|..+...-..|.|..
T Consensus 16 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 5666677777777432221 13457899999999999999988777777643
No 482
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.07 E-value=58 Score=25.33 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=37.2
Q ss_pred CCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Q 010338 452 LKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502 (513)
Q Consensus 452 L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR~~ 502 (513)
+++.+..+|...|-...+. .....+||..+|++...|..+...-..|.|..
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 14 FTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 5677777777777433221 13467899999999999999988777777654
No 483
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=31.69 E-value=78 Score=23.71 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.8
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 378 RVPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 378 R~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
..-|..|||+.+|+|...|...+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 6789999999999999999887654
No 484
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=31.62 E-value=37 Score=29.64 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.4
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 468 GKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 468 ~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
|+...|+.+||+..|||+.++..+
T Consensus 21 G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (185)
T 2yve_A 21 SLETLSYDSLAEATGLSKSGLIYH 44 (185)
T ss_dssp CSTTCCHHHHHHHHCCCHHHHHHH
T ss_pred ChhhccHHHHHHHhCCChHHHHHh
Confidence 368899999999999999999765
No 485
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=31.57 E-value=33 Score=32.93 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKHEVK 494 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi~~r 494 (513)
..++|+.|||+.+|+++++|.+++..
T Consensus 19 ~~~lsl~eia~~lgl~ksT~~RlL~t 44 (260)
T 3r4k_A 19 RLEIGLSDLTRLSGMNKATVYRLMSE 44 (260)
T ss_dssp BSEEEHHHHHHHHCSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35799999999999999999998864
No 486
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=31.52 E-value=34 Score=30.17 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=23.1
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +.+.|..+||+..|||+.++..+
T Consensus 24 ~~~G---~~~~s~~~Ia~~Agvskgt~Y~y 50 (197)
T 2f07_A 24 SEKG---LDKASISDIVKKAGTAQGTFYLY 50 (197)
T ss_dssp HHHC---TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHhC---cccCCHHHHHHHhCCCchHHHHh
Confidence 4555 68899999999999999998764
No 487
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=31.51 E-value=88 Score=24.81 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=21.7
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 378 RVPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 378 R~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
..-|..|||+.||++...|+..+..
T Consensus 26 ~~~t~~eLA~~Lgvsr~tV~~~L~~ 50 (81)
T 1qbj_A 26 KATTAHDLSGKLGTPKKEINRVLYS 50 (81)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 5678999999999999999887754
No 488
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=31.49 E-value=37 Score=33.22 Aligned_cols=37 Identities=14% Similarity=-0.042 Sum_probs=29.5
Q ss_pred HHHHHhHHhcCCCCCCCCHHHHHHHhC-------CCHHHHHHHHHHHH
Q 010338 456 ESLVIRQRFGLDGKGDRTLGEIAGNLN-------ISREMVRKHEVKGL 496 (513)
Q Consensus 456 Er~VL~lRyGL~~~~~~Tl~EIA~~Lg-------ISrerVRqi~~rAL 496 (513)
.|.+|.+.| ..++|..+||+.|+ +|+.+|..+..+-.
T Consensus 11 ~R~~i~~~~----~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~ 54 (345)
T 3hot_A 11 TRTVLIFCF----HLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFK 54 (345)
T ss_dssp HHHHHHHHH----HTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHH----HcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Confidence 345566666 57899999999987 99999999988753
No 489
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=31.28 E-value=52 Score=24.21 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=35.9
Q ss_pred cCCHHHHHHHhHHhcCCCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 010338 451 SLKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKLK 500 (513)
Q Consensus 451 ~L~~rEr~VL~lRyGL~~~~-~~Tl~EIA~~LgISrerVRqi~~rALkKLR 500 (513)
.+++.+..+|...|....+. .....+||..+|+|...|......-..+.|
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 59 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCK 59 (62)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCG
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchh
Confidence 36777788888887543222 124578999999999999998876665554
No 490
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=31.20 E-value=28 Score=30.56 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 010338 469 KGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 469 ~~~~Tl~EIA~~LgISrerVRqi 491 (513)
+.+.|+.+||+..|||+.++..+
T Consensus 26 ~~~~t~~~IA~~agvs~~tlY~~ 48 (199)
T 2o7t_A 26 HDSLTMENIAEQAGVGVATLYRN 48 (199)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHH
T ss_pred CccCCHHHHHHHhCCCHHHHHHH
Confidence 67899999999999999999875
No 491
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=31.15 E-value=25 Score=30.62 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.3
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRK 490 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRq 490 (513)
...| +.+.|+.+||+..|||+.++..
T Consensus 25 ~~~G---~~~~s~~~Ia~~agvs~~t~Y~ 50 (203)
T 3b81_A 25 IANG---YENTTLAFIINKLGISKGALYH 50 (203)
T ss_dssp HHHC---STTCCHHHHHHHHTCCHHHHHT
T ss_pred HHcC---cccCcHHHHHHHhCCCchhHHH
Confidence 4555 6789999999999999999875
No 492
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=31.13 E-value=31 Score=30.54 Aligned_cols=28 Identities=14% Similarity=0.020 Sum_probs=23.7
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKHE 492 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi~ 492 (513)
...| +.+.|+.+||+..|||+.++..+.
T Consensus 31 ~~~G---~~~~t~~~IA~~agvs~~t~Y~~F 58 (218)
T 3gzi_A 31 IERP---YAQVSIREIASLAGTDPGLIRYYF 58 (218)
T ss_dssp HTSC---CSCCCHHHHHHHHTSCTHHHHHHH
T ss_pred HHCC---CCcCCHHHHHHHhCCCHHHHHHHc
Confidence 4455 678999999999999999998764
No 493
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=31.11 E-value=27 Score=30.38 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.0
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +.+.|+.+||+..|||+.++..+
T Consensus 31 ~~~G---~~~~ti~~Ia~~agvs~~t~Y~~ 57 (208)
T 3cwr_A 31 SSGG---AAAMTMEGVASEAGIAKKTLYRF 57 (208)
T ss_dssp HHHC---GGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcC---HHhccHHHHHHHhCCCHHHHHHH
Confidence 3455 67899999999999999999865
No 494
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=31.04 E-value=36 Score=30.00 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=23.2
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +...|+.+||+..|||+.++..+
T Consensus 21 ~~~G---~~~ts~~~IA~~aGvs~gtlY~~ 47 (197)
T 2gen_A 21 SEHG---VDATTIEMIRDRSGASIGSLYHH 47 (197)
T ss_dssp HHHC---TTTCCHHHHHHHHCCCHHHHHHH
T ss_pred HHcC---cccCCHHHHHHHHCCChHHHHHH
Confidence 4455 68899999999999999999765
No 495
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=30.85 E-value=1.7e+02 Score=23.99 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=42.5
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHhccCcccccCC------CCCchhhhhccccCCCCCCchhhhHHHHHHHHHHHHHhcC
Q 010338 379 VPTDEEIIQGVNISPERYREVMKASKPILSLHSR------HGVTQEEFINGITDVDGVENENQRQPALLRLALDDVLDSL 452 (513)
Q Consensus 379 ~PT~eELA~~lgis~e~v~~~l~~~~~~~SLd~~------~~~~~~e~~d~l~d~~~~~~ee~~~~~~l~~~L~~aL~~L 452 (513)
.-|..++|+.+|++...+..+.+-... .+++.. .+.+.+.++.. ...... ......+...+..|
T Consensus 25 glsq~~lA~~~gis~~~is~~E~g~~~-p~~~~l~~ia~~l~v~~~~l~~~----~~~~~~-----~~~~~~l~~~~~~l 94 (126)
T 3ivp_A 25 GLTREQVGAMIEIDPRYLTNIENKGQH-PSLQVLYDLVSLLNVSVDEFFLP----ASSQVK-----STKRRQLENKIDNF 94 (126)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSCCC-CCHHHHHHHHHHHTCCSHHHHSC----CCCCCC-----CHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCCCCC-CCHHHHHHHHHHHCcCHHHHhCC----Cccccc-----hHHHHHHHHHHHcC
Confidence 357889999999999998888765432 232221 11112222221 111011 12234566778899
Q ss_pred CHHHHHHHhHHh
Q 010338 453 KPKESLVIRQRF 464 (513)
Q Consensus 453 ~~rEr~VL~lRy 464 (513)
++.++.++.-..
T Consensus 95 ~~~~~~~i~~~i 106 (126)
T 3ivp_A 95 TDADLVIMESVA 106 (126)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999988876543
No 496
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=30.65 E-value=24 Score=31.84 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=0.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Q 010338 471 DRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501 (513)
Q Consensus 471 ~~Tl~EIA~~LgISrerVRqi~~rALkKLR~ 501 (513)
..|.++||..+|+|+++|. |++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 190 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALS----RVFQELER 190 (213)
T ss_dssp -------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 6799999999999999988 45555654
No 497
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=30.57 E-value=3.1e+02 Score=27.23 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHh
Q 010338 363 GEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 402 (513)
Q Consensus 363 ~ki~ka~~~L~~elgR~PT~eELA~~lgis~e~v~~~l~~ 402 (513)
..+.++...+...+....+.+++|+.+|+|...+....+.
T Consensus 305 ~~~~~~~~~i~~~~~~~~~~~~~a~~~~~s~~~l~r~f~~ 344 (412)
T 4fe7_A 305 PAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKE 344 (412)
T ss_dssp HHHHHHHHHHHHHGGGTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3566677777777888999999999999999999888765
No 498
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=30.29 E-value=50 Score=30.00 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=30.0
Q ss_pred HHhcC-CHHHHHHHhHHhcCCCCCCCCHHHHHHHhC-CCHHHHHHHHH
Q 010338 448 VLDSL-KPKESLVIRQRFGLDGKGDRTLGEIAGNLN-ISREMVRKHEV 493 (513)
Q Consensus 448 aL~~L-~~rEr~VL~lRyGL~~~~~~Tl~EIA~~Lg-ISrerVRqi~~ 493 (513)
++.-| .|.=..||.+-. ..++|..||++.|| +|..+|++++.
T Consensus 16 ~~~~La~P~Rl~il~~L~----~~~~~~~~l~~~l~~~~~~~~s~Hl~ 59 (182)
T 4g6q_A 16 LVDLLHHPLRWRITQLLI----GRSLTTRELAELLPDVATTTLYRQVG 59 (182)
T ss_dssp HHHHTTSHHHHHHHHHTT----TSCEEHHHHHHHCTTBCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH----hCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 34444 444455555544 46899999999996 99999998764
No 499
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=30.06 E-value=37 Score=30.50 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.0
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +.+.|+.+||+..|||+.++..+
T Consensus 23 ~~~G---y~~ts~~~IA~~AGvskgtlY~~ 49 (215)
T 1ui5_A 23 DRRG---YESTTLSEIVAHAGVTKGALYFH 49 (215)
T ss_dssp HHHC---TTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHhC---cccCCHHHHHHHhCCCchhhHhh
Confidence 4455 68999999999999999999764
No 500
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=29.76 E-value=38 Score=30.75 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=22.8
Q ss_pred HHhcCCCCCCCCHHHHHHHhCCCHHHHHHH
Q 010338 462 QRFGLDGKGDRTLGEIAGNLNISREMVRKH 491 (513)
Q Consensus 462 lRyGL~~~~~~Tl~EIA~~LgISrerVRqi 491 (513)
...| +...|+.+||+..|||+.++...
T Consensus 57 ~~~G---~~~~tv~~IA~~AGvs~~t~Y~~ 83 (229)
T 3bni_A 57 DEVG---YDALSTRAVALRADVPIGSVYRF 83 (229)
T ss_dssp HHHC---TTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HhcC---hhhccHHHHHHHHCCCchhHHHH
Confidence 3455 68899999999999999998764
Done!