Query 010341
Match_columns 512
No_of_seqs 225 out of 987
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:42:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cuj_A Transcriptional adaptor 99.9 3.8E-27 1.3E-31 203.6 12.4 86 427-512 22-107 (108)
2 2aqe_A Transcriptional adaptor 99.9 1E-26 3.6E-31 195.2 10.0 84 429-512 6-89 (90)
3 2elj_A Transcriptional adapter 99.9 2.3E-26 7.7E-31 192.4 9.4 82 429-510 5-88 (88)
4 2elk_A SPCC24B10.08C protein; 99.6 3.1E-15 1.1E-19 115.4 7.4 55 89-143 3-58 (58)
5 2yus_A SWI/SNF-related matrix- 99.4 1.2E-13 4.1E-18 113.1 7.4 55 93-148 16-70 (79)
6 1x41_A Transcriptional adaptor 99.4 2.7E-13 9.1E-18 105.2 7.1 56 90-145 3-58 (60)
7 2e5r_A Dystrobrevin alpha; ZZ 99.3 1.1E-12 3.7E-17 102.7 6.0 57 30-87 4-61 (63)
8 2fc7_A ZZZ3 protein; structure 99.1 6.1E-11 2.1E-15 97.6 5.7 56 36-92 20-79 (82)
9 1guu_A C-MYB, MYB proto-oncoge 99.1 9.8E-11 3.4E-15 87.9 5.8 46 95-140 3-48 (52)
10 1gvd_A MYB proto-oncogene prot 99.1 1.2E-10 3.9E-15 87.6 5.7 47 94-140 2-48 (52)
11 1w0t_A Telomeric repeat bindin 99.0 2.3E-10 7.9E-15 86.3 6.1 46 95-140 2-49 (53)
12 2d9a_A B-MYB, MYB-related prot 99.0 3.2E-10 1.1E-14 87.7 6.7 48 93-140 6-53 (60)
13 2yum_A ZZZ3 protein, zinc fing 99.0 3E-10 1E-14 91.8 6.0 51 93-143 6-61 (75)
14 2dim_A Cell division cycle 5-l 99.0 9E-10 3.1E-14 87.8 7.0 48 93-140 7-54 (70)
15 2dip_A Zinc finger SWIM domain 99.0 1.7E-10 6E-15 97.9 2.9 56 37-103 31-87 (98)
16 2cu7_A KIAA1915 protein; nucle 99.0 9.6E-10 3.3E-14 88.2 6.8 48 93-141 7-54 (72)
17 3sjm_A Telomeric repeat-bindin 98.9 9E-10 3.1E-14 86.4 6.1 47 94-140 10-58 (64)
18 1ity_A TRF1; helix-turn-helix, 98.9 1.2E-09 4.1E-14 86.9 6.0 48 94-141 9-58 (69)
19 2cjj_A Radialis; plant develop 98.9 1.3E-09 4.5E-14 91.6 4.6 59 95-153 8-74 (93)
20 2cqr_A RSGI RUH-043, DNAJ homo 98.8 1.4E-09 4.9E-14 87.4 3.7 51 93-144 16-69 (73)
21 1wgx_A KIAA1903 protein; MYB D 98.8 5.8E-09 2E-13 83.6 5.2 46 95-140 8-56 (73)
22 1tot_A CREB-binding protein; z 98.8 2.8E-09 9.6E-14 80.1 2.8 45 35-87 4-48 (52)
23 2ltp_A Nuclear receptor corepr 98.2 1.2E-09 4.3E-14 91.2 0.0 50 90-140 11-60 (89)
24 2din_A Cell division cycle 5-l 98.7 1.8E-08 6.2E-13 79.2 6.0 47 92-140 6-52 (66)
25 2ckx_A NGTRF1, telomere bindin 98.7 1.9E-08 6.6E-13 82.8 5.8 46 96-141 1-50 (83)
26 2k9n_A MYB24; R2R3 domain, DNA 98.7 2.2E-08 7.4E-13 86.3 6.0 46 96-141 2-47 (107)
27 1gv2_A C-MYB, MYB proto-oncoge 98.7 2.3E-08 7.8E-13 85.6 5.7 47 94-140 3-49 (105)
28 2llk_A Cyclin-D-binding MYB-li 98.6 5.9E-08 2E-12 78.0 6.2 47 91-139 19-65 (73)
29 3zqc_A MYB3; transcription-DNA 98.6 3.1E-08 1.1E-12 88.3 4.7 47 95-141 2-48 (131)
30 2eqr_A N-COR1, N-COR, nuclear 98.6 6.6E-08 2.3E-12 75.0 5.8 44 95-139 12-55 (61)
31 1h8a_C AMV V-MYB, MYB transfor 98.6 8.2E-08 2.8E-12 85.2 6.6 48 93-140 25-72 (128)
32 3osg_A MYB21; transcription-DN 98.5 1.7E-07 5.7E-12 83.1 6.3 48 93-141 9-56 (126)
33 2k9n_A MYB24; R2R3 domain, DNA 98.5 2.1E-07 7E-12 80.1 6.8 47 93-140 51-97 (107)
34 1gv2_A C-MYB, MYB proto-oncoge 98.5 1.7E-07 6E-12 80.1 6.1 47 93-140 54-100 (105)
35 3osg_A MYB21; transcription-DN 98.4 2.6E-07 9E-12 81.8 5.9 47 93-140 60-106 (126)
36 2iw5_B Protein corest, REST co 98.4 3.1E-07 1.1E-11 88.0 6.8 50 91-141 129-178 (235)
37 2roh_A RTBP1, telomere binding 98.4 3.3E-07 1.1E-11 80.5 6.2 48 94-141 30-81 (122)
38 2aje_A Telomere repeat-binding 98.4 2.7E-07 9.2E-12 79.1 5.1 50 94-143 12-65 (105)
39 3zqc_A MYB3; transcription-DNA 98.4 3.7E-07 1.3E-11 81.3 5.8 48 93-141 52-99 (131)
40 1h8a_C AMV V-MYB, MYB transfor 98.3 5.2E-07 1.8E-11 79.9 6.2 47 93-140 77-123 (128)
41 2cqq_A RSGI RUH-037, DNAJ homo 98.3 1.3E-06 4.3E-11 70.0 7.2 45 95-140 8-55 (72)
42 2juh_A Telomere binding protei 98.3 4.4E-07 1.5E-11 79.7 4.9 48 94-141 16-67 (121)
43 1h89_C C-MYB, MYB proto-oncoge 98.3 9.6E-07 3.3E-11 81.1 6.5 48 93-140 56-103 (159)
44 2yqk_A Arginine-glutamic acid 98.1 4.4E-06 1.5E-10 65.1 5.9 46 93-139 7-53 (63)
45 1h89_C C-MYB, MYB proto-oncoge 98.1 3.2E-06 1.1E-10 77.5 5.5 47 93-140 108-154 (159)
46 2xag_B REST corepressor 1; ami 98.0 7E-06 2.4E-10 87.2 6.5 47 94-141 379-425 (482)
47 4eef_G F-HB80.4, designed hema 97.9 2.3E-06 8E-11 68.0 1.1 44 95-138 20-66 (74)
48 2crg_A Metastasis associated p 97.9 1.4E-05 4.9E-10 63.5 5.4 44 95-139 8-52 (70)
49 1x58_A Hypothetical protein 49 97.9 2E-05 6.7E-10 60.9 5.5 46 94-140 7-55 (62)
50 4a69_C Nuclear receptor corepr 97.7 2.9E-05 1E-09 65.2 5.4 44 95-139 43-86 (94)
51 1ign_A Protein (RAP1); RAP1,ye 97.6 3.8E-05 1.3E-09 74.3 4.1 47 94-140 7-58 (246)
52 2fq3_A Transcription regulator 96.3 0.011 3.8E-07 50.3 7.8 69 443-511 22-98 (104)
53 3hm5_A DNA methyltransferase 1 96.3 0.0054 1.9E-07 51.2 5.6 45 95-140 30-79 (93)
54 1fex_A TRF2-interacting telome 96.1 0.0046 1.6E-07 47.3 3.8 46 95-140 2-56 (59)
55 2xb0_X Chromo domain-containin 95.9 0.0047 1.6E-07 61.2 4.1 32 92-123 165-196 (270)
56 1ug2_A 2610100B20RIK gene prod 95.9 0.012 4.2E-07 48.4 5.6 44 97-140 35-80 (95)
57 4b4c_A Chromodomain-helicase-D 95.5 0.011 3.7E-07 56.1 4.5 31 94-124 133-163 (211)
58 2dce_A KIAA1915 protein; swirm 95.4 0.047 1.6E-06 47.0 7.8 70 442-511 23-101 (111)
59 1ofc_X ISWI protein; nuclear p 95.2 0.015 5.1E-07 58.5 4.7 48 96-144 111-158 (304)
60 2ebi_A DNA binding protein GT- 94.9 0.014 4.8E-07 47.6 2.9 45 96-140 5-62 (86)
61 1irz_A ARR10-B; helix-turn-hel 94.5 0.06 2E-06 41.8 5.4 48 95-142 7-58 (64)
62 4iej_A DNA methyltransferase 1 93.9 0.088 3E-06 43.8 5.6 45 95-140 30-79 (93)
63 2lr8_A CAsp8-associated protei 92.6 0.013 4.4E-07 45.8 0.0 43 97-140 16-60 (70)
64 2xag_B REST corepressor 1; ami 93.5 0.014 4.7E-07 62.2 0.0 46 94-140 188-233 (482)
65 1ofc_X ISWI protein; nuclear p 90.1 0.22 7.7E-06 50.0 4.3 46 95-140 212-272 (304)
66 3ny3_A E3 ubiquitin-protein li 89.0 0.27 9.1E-06 39.3 3.2 42 42-88 6-51 (75)
67 3nis_A E3 ubiquitin-protein li 88.6 0.53 1.8E-05 38.2 4.8 42 42-88 10-55 (82)
68 2y9y_A Imitation switch protei 88.4 0.35 1.2E-05 49.8 4.4 60 96-157 124-184 (374)
69 1v5n_A PDI-like hypothetical p 87.9 0.27 9.2E-06 40.5 2.6 32 37-70 47-78 (89)
70 4b4c_A Chromodomain-helicase-D 86.3 0.6 2E-05 43.9 4.5 42 96-137 8-53 (211)
71 2y9y_A Imitation switch protei 78.4 2.1 7.2E-05 44.0 5.1 45 95-139 228-287 (374)
72 2d8v_A Zinc finger FYVE domain 77.7 1.5 5.3E-05 33.9 2.9 34 35-72 6-39 (67)
73 1z60_A TFIIH basal transcripti 63.7 3 0.0001 31.6 1.7 31 38-69 16-46 (59)
74 1weo_A Cellulose synthase, cat 63.4 2.9 0.0001 34.3 1.7 33 37-70 16-52 (93)
75 1ign_A Protein (RAP1); RAP1,ye 53.5 15 0.00053 35.4 5.2 24 117-140 173-196 (246)
76 4fx0_A Probable transcriptiona 51.9 17 0.00059 31.5 5.0 57 454-510 26-82 (148)
77 2htj_A P fimbrial regulatory p 50.4 14 0.00049 28.6 3.8 43 469-511 3-45 (81)
78 3kp7_A Transcriptional regulat 50.0 25 0.00087 29.9 5.8 57 449-511 26-82 (151)
79 2bv6_A MGRA, HTH-type transcri 49.2 25 0.00087 29.4 5.5 56 451-511 27-82 (142)
80 2d1h_A ST1889, 109AA long hypo 48.1 39 0.0014 26.6 6.3 57 451-511 11-67 (109)
81 2fa5_A Transcriptional regulat 45.4 47 0.0016 28.4 6.8 57 450-511 38-94 (162)
82 3g3z_A NMB1585, transcriptiona 45.0 32 0.0011 29.0 5.5 56 451-511 21-76 (145)
83 2ve8_A FTSK, DNA translocase F 43.9 34 0.0012 26.9 4.9 45 464-512 12-56 (73)
84 3k0l_A Repressor protein; heli 43.7 48 0.0016 28.6 6.6 60 447-511 32-91 (162)
85 2fbi_A Probable transcriptiona 43.0 34 0.0012 28.4 5.4 55 452-511 27-81 (142)
86 3ech_A MEXR, multidrug resista 41.8 50 0.0017 27.6 6.3 56 451-511 25-82 (142)
87 1wg2_A Zinc finger (AN1-like) 41.7 52 0.0018 25.2 5.5 51 30-87 8-58 (64)
88 2frh_A SARA, staphylococcal ac 40.7 38 0.0013 28.3 5.2 58 451-511 27-84 (127)
89 1lj9_A Transcriptional regulat 40.5 33 0.0011 28.7 4.9 56 451-511 19-74 (144)
90 1sfx_A Conserved hypothetical 40.4 48 0.0016 26.0 5.7 55 452-511 11-65 (109)
91 3bro_A Transcriptional regulat 39.2 56 0.0019 27.0 6.1 57 451-511 24-81 (141)
92 3boq_A Transcriptional regulat 39.2 44 0.0015 28.5 5.6 57 451-511 37-93 (160)
93 1bja_A Transcription regulator 38.8 36 0.0012 28.1 4.5 53 453-510 8-61 (95)
94 3bja_A Transcriptional regulat 38.8 41 0.0014 27.8 5.2 53 454-511 26-78 (139)
95 2x4h_A Hypothetical protein SS 38.7 49 0.0017 27.7 5.7 54 457-511 9-62 (139)
96 4hbl_A Transcriptional regulat 38.6 43 0.0015 28.5 5.4 56 451-511 31-86 (149)
97 2fbh_A Transcriptional regulat 38.2 44 0.0015 27.8 5.4 57 451-511 27-83 (146)
98 3bpv_A Transcriptional regulat 38.2 43 0.0015 27.6 5.2 55 452-511 20-74 (138)
99 3fm5_A Transcriptional regulat 38.0 44 0.0015 28.3 5.4 60 448-511 26-85 (150)
100 2li6_A SWI/SNF chromatin-remod 37.7 31 0.0011 29.2 4.1 36 104-140 52-95 (116)
101 3oop_A LIN2960 protein; protei 37.6 36 0.0012 28.5 4.7 53 454-511 30-82 (143)
102 2k02_A Ferrous iron transport 37.5 40 0.0014 27.3 4.6 39 473-511 8-47 (87)
103 3bj6_A Transcriptional regulat 36.9 58 0.002 27.4 6.0 56 451-511 30-85 (152)
104 3jw4_A Transcriptional regulat 36.9 52 0.0018 27.8 5.6 64 445-511 25-88 (148)
105 2qww_A Transcriptional regulat 36.2 60 0.002 27.4 5.9 56 451-511 31-86 (154)
106 2dk5_A DNA-directed RNA polyme 35.8 51 0.0018 26.6 5.1 51 458-511 17-67 (91)
107 2gxg_A 146AA long hypothetical 35.4 58 0.002 27.1 5.6 56 450-511 26-81 (146)
108 3s2w_A Transcriptional regulat 35.0 48 0.0016 28.4 5.1 59 448-511 37-95 (159)
109 2zc2_A DNAD-like replication p 34.7 15 0.00051 28.6 1.6 18 355-372 60-77 (78)
110 1xn7_A Hypothetical protein YH 34.5 44 0.0015 26.3 4.3 38 473-510 8-46 (78)
111 3e7l_A Transcriptional regulat 33.9 35 0.0012 25.3 3.5 26 101-127 19-44 (63)
112 3hsr_A HTH-type transcriptiona 33.7 34 0.0011 28.8 3.8 56 451-511 26-81 (140)
113 2cs3_A Protein C14ORF4, MY039 33.1 35 0.0012 27.4 3.4 37 34-70 12-48 (93)
114 3cdh_A Transcriptional regulat 33.1 68 0.0023 27.2 5.8 56 451-511 33-88 (155)
115 2pex_A Transcriptional regulat 33.1 46 0.0016 28.2 4.7 57 450-511 36-92 (153)
116 3cjn_A Transcriptional regulat 32.3 63 0.0022 27.6 5.5 56 451-511 42-97 (162)
117 2rdp_A Putative transcriptiona 32.2 52 0.0018 27.6 4.8 56 451-511 32-87 (150)
118 3e6m_A MARR family transcripti 32.0 74 0.0025 27.3 5.9 61 446-511 38-98 (161)
119 3dpt_A ROCO, RAB family protei 31.7 47 0.0016 33.4 5.0 54 457-510 11-68 (332)
120 1jgs_A Multiple antibiotic res 31.2 57 0.002 26.9 4.9 55 452-511 25-79 (138)
121 4b8x_A SCO5413, possible MARR- 31.1 40 0.0014 28.9 3.9 56 453-511 27-82 (147)
122 1tbx_A ORF F-93, hypothetical 30.7 59 0.002 25.6 4.7 51 456-511 3-57 (99)
123 2a61_A Transcriptional regulat 30.7 56 0.0019 27.2 4.8 54 453-511 25-78 (145)
124 3nrv_A Putative transcriptiona 30.3 74 0.0025 26.6 5.5 51 456-511 35-85 (148)
125 2vn2_A DNAD, chromosome replic 30.3 91 0.0031 26.4 6.0 57 454-511 25-82 (128)
126 1ku9_A Hypothetical protein MJ 30.1 86 0.003 25.9 5.9 57 451-511 16-72 (152)
127 1s3j_A YUSO protein; structura 29.2 65 0.0022 27.2 4.9 56 451-511 27-82 (155)
128 2xvc_A ESCRT-III, SSO0910; cel 29.0 65 0.0022 24.2 4.0 35 477-511 22-56 (59)
129 3u2r_A Regulatory protein MARR 28.8 78 0.0027 27.4 5.5 62 446-511 31-93 (168)
130 3r0a_A Putative transcriptiona 28.6 1.1E+02 0.0039 25.4 6.3 58 450-511 15-73 (123)
131 1vz0_A PARB, chromosome partit 28.5 1.2E+02 0.0043 28.4 7.2 59 451-509 138-201 (230)
132 2jrz_A Histone demethylase jar 27.7 83 0.0028 26.5 5.2 37 103-140 42-90 (117)
133 1z91_A Organic hydroperoxide r 27.7 44 0.0015 28.0 3.5 55 452-511 31-85 (147)
134 3eco_A MEPR; mutlidrug efflux 27.5 90 0.0031 25.7 5.5 57 451-511 21-78 (139)
135 1x4s_A Protein FON, zinc finge 27.2 48 0.0016 25.0 3.1 36 35-70 9-44 (59)
136 2jxj_A Histone demethylase jar 26.9 63 0.0021 26.1 4.2 37 104-140 39-86 (96)
137 2k6x_A Sigma-A, RNA polymerase 26.8 1.1E+02 0.0037 23.4 5.3 42 468-509 11-57 (72)
138 2lm1_A Lysine-specific demethy 26.7 91 0.0031 25.6 5.2 37 103-140 46-94 (107)
139 2pjp_A Selenocysteine-specific 26.6 51 0.0017 27.7 3.7 52 459-510 59-110 (121)
140 3bdd_A Regulatory protein MARR 26.4 1.1E+02 0.0039 25.0 5.9 51 456-511 26-76 (142)
141 2obp_A Putative DNA-binding pr 26.3 83 0.0028 25.8 4.7 55 457-511 12-67 (96)
142 2eth_A Transcriptional regulat 25.7 65 0.0022 27.4 4.3 53 454-511 37-89 (154)
143 1wfl_A Zinc finger protein 216 25.6 93 0.0032 24.5 4.6 47 34-87 22-68 (74)
144 3f3x_A Transcriptional regulat 25.4 1.1E+02 0.0039 25.3 5.8 54 452-511 27-81 (144)
145 2i5u_A DNAD domain protein; st 25.4 26 0.0009 27.7 1.5 18 355-372 65-82 (83)
146 2elr_A Zinc finger protein 406 25.3 41 0.0014 20.5 2.2 17 32-48 4-20 (36)
147 4aik_A Transcriptional regulat 25.2 1.1E+02 0.0038 26.2 5.8 53 455-511 25-77 (151)
148 2cxy_A BAF250B subunit, HBAF25 25.1 92 0.0031 26.5 5.1 37 103-140 53-101 (125)
149 2k4b_A Transcriptional regulat 25.0 49 0.0017 27.1 3.2 51 456-511 30-84 (99)
150 1p4x_A Staphylococcal accessor 24.9 70 0.0024 30.6 4.7 57 451-511 24-81 (250)
151 2vrw_B P95VAV, VAV1, proto-onc 24.8 54 0.0018 33.3 4.1 36 36-72 356-393 (406)
152 3deu_A Transcriptional regulat 24.5 81 0.0028 27.4 4.8 59 449-511 41-99 (166)
153 1wfp_A Zinc finger (AN1-like) 24.5 92 0.0032 24.5 4.4 47 34-87 22-68 (74)
154 1r7j_A Conserved hypothetical 23.3 83 0.0029 25.3 4.2 36 475-511 16-51 (95)
155 1twf_L ABC10-alpha, DNA-direct 23.3 29 0.00098 27.1 1.3 27 33-59 24-52 (70)
156 2l0b_A E3 ubiquitin-protein li 22.7 56 0.0019 25.9 3.0 65 5-70 8-72 (91)
157 2xb0_X Chromo domain-containin 22.2 1.3E+02 0.0044 29.4 6.0 46 95-140 3-52 (270)
158 3tgn_A ADC operon repressor AD 22.2 1E+02 0.0036 25.5 4.9 49 457-511 34-82 (146)
159 1wfk_A Zinc finger, FYVE domai 22.1 77 0.0026 25.4 3.7 35 35-70 7-42 (88)
160 2fu4_A Ferric uptake regulatio 22.0 1E+02 0.0035 23.4 4.4 33 479-511 32-69 (83)
161 1p6r_A Penicillinase repressor 21.9 1.2E+02 0.0039 23.1 4.7 49 458-511 6-58 (82)
162 2jne_A Hypothetical protein YF 21.8 32 0.0011 28.6 1.3 30 38-68 33-68 (101)
163 2els_A Zinc finger protein 406 21.8 40 0.0014 20.7 1.6 16 33-48 5-20 (36)
164 1c20_A DEAD ringer protein; DN 21.8 92 0.0032 26.6 4.4 37 103-140 54-103 (128)
165 1kkx_A Transcription regulator 21.7 70 0.0024 27.4 3.6 36 104-140 51-94 (123)
166 1p4x_A Staphylococcal accessor 21.7 1.2E+02 0.004 28.9 5.6 57 451-511 148-205 (250)
167 1ig6_A MRF-2, modulator recogn 21.7 61 0.0021 26.8 3.1 39 103-141 35-85 (107)
168 2fxa_A Protease production reg 21.3 69 0.0024 29.3 3.8 55 452-511 39-93 (207)
169 2yqq_A Zinc finger HIT domain- 20.9 69 0.0023 23.8 2.9 33 36-72 11-43 (56)
170 1wfh_A Zinc finger (AN1-like) 20.8 1.1E+02 0.0038 23.4 4.1 47 34-87 12-58 (64)
171 2nyx_A Probable transcriptiona 20.7 1.3E+02 0.0044 26.0 5.3 50 457-511 41-90 (168)
172 3cuo_A Uncharacterized HTH-typ 20.5 1.2E+02 0.0042 23.3 4.7 35 477-511 35-69 (99)
173 2cr8_A MDM4 protein; ZF-ranbp 20.4 74 0.0025 23.3 2.8 31 51-81 10-47 (53)
174 2qvo_A Uncharacterized protein 20.3 55 0.0019 25.9 2.5 56 454-510 5-60 (95)
No 1
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=99.94 E-value=3.8e-27 Score=203.60 Aligned_cols=86 Identities=29% Similarity=0.478 Sum_probs=82.4
Q ss_pred CCCCCCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHH
Q 010341 427 ASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVK 506 (512)
Q Consensus 427 ~~~~~~~~l~i~~~pg~~lLs~~E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~ 506 (512)
..++.+.+|||+++||++|||++|++||+++||+|.+||.+|++||+|+.++|.++++||+.+++||++|+++|||||++
T Consensus 22 ~~r~~~~~ldi~~~pg~~LLs~~E~~LCs~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kID~~K~~rIydff~~ 101 (108)
T 2cuj_A 22 SGRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIR 101 (108)
T ss_dssp CCCSSCCCCCCTTSTTTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCCCCccCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 010341 507 KGLAPP 512 (512)
Q Consensus 507 ~Gwi~~ 512 (512)
+|||++
T Consensus 102 ~GWi~~ 107 (108)
T 2cuj_A 102 EGYITK 107 (108)
T ss_dssp TTSSCC
T ss_pred cCCCCC
Confidence 999974
No 2
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=99.94 E-value=1e-26 Score=195.24 Aligned_cols=84 Identities=30% Similarity=0.483 Sum_probs=79.9
Q ss_pred CCCCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCC
Q 010341 429 SSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKG 508 (512)
Q Consensus 429 ~~~~~~l~i~~~pg~~lLs~~E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~G 508 (512)
++...|+||+++||++|||++|++||+++||+|.+||.+|++||+|+.++|.+++++|+.+++||++|+++|||||+++|
T Consensus 6 ~~~~~~ldi~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~li~E~~~~g~l~k~da~~~~kiD~~K~~~iydf~~~~G 85 (90)
T 2aqe_A 6 RRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREG 85 (90)
T ss_dssp CCSSCCSSSSSSSSTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCCHHHHHTTSSSSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHcccHHHHHHHHHHHHHcC
Confidence 34457899999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CCCC
Q 010341 509 LAPP 512 (512)
Q Consensus 509 wi~~ 512 (512)
||+.
T Consensus 86 wi~~ 89 (90)
T 2aqe_A 86 YITK 89 (90)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9974
No 3
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.3e-26 Score=192.41 Aligned_cols=82 Identities=32% Similarity=0.545 Sum_probs=77.9
Q ss_pred CCCCCcc-cccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHh-CCCcCHHHHhhhhccCchhHHHHHHHHHH
Q 010341 429 SSHVNDL-YIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVK 506 (512)
Q Consensus 429 ~~~~~~l-~i~~~pg~~lLs~~E~~LCs~lrL~P~~YL~iK~~LirE~~~-~G~lk~~~A~~l~kiD~~K~~rIydFlv~ 506 (512)
++.+.|+ ||+++||++|||++|++||+++||+|.+||.+|++||+|+++ +|.++++||+.+++||++|+++|||||++
T Consensus 5 ~~~~~~l~di~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~Li~E~~k~g~~lkk~da~~~~kiD~~K~~~iydf~~~ 84 (88)
T 2elj_A 5 SSGNMTISDIQHAPDYALLSNDEQQLCIQLKILPKPYLVLKEVMFRELLKTGGNLSKSACRELLNIDPIKANRIYDFFQS 84 (88)
T ss_dssp CCSCCCSHHHHTSTTCSSSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCccccccCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4456789 999999999999999999999999999999999999999997 56699999999999999999999999999
Q ss_pred CCCC
Q 010341 507 KGLA 510 (512)
Q Consensus 507 ~Gwi 510 (512)
+|||
T Consensus 85 ~Gwi 88 (88)
T 2elj_A 85 QNWM 88 (88)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9997
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.58 E-value=3.1e-15 Score=115.44 Aligned_cols=55 Identities=44% Similarity=0.854 Sum_probs=52.5
Q ss_pred CCCCccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhC-CCCHHHHHHHHHhhccC
Q 010341 89 LSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYMN 143 (512)
Q Consensus 89 ~~~p~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg-~rt~~ec~~hy~~~y~~ 143 (512)
.++|++...||++||.+|+++|+.||.+||..||++|+ +||+.||+.||.++|++
T Consensus 3 ~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 3 SGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp SCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 46899999999999999999999999999999999999 99999999999999974
No 5
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=113.07 Aligned_cols=55 Identities=33% Similarity=0.850 Sum_probs=51.3
Q ss_pred ccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhccCCCCCC
Q 010341 93 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFP 148 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~y~~~~~~p 148 (512)
.....||++|+.+|++||+.|| +||..||++|++||+.||+.||.++|+++++..
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~ 70 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLE 70 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhcccccccc
Confidence 3567899999999999999999 999999999999999999999999999997654
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.42 E-value=2.7e-13 Score=105.23 Aligned_cols=56 Identities=38% Similarity=0.678 Sum_probs=51.7
Q ss_pred CCCccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhccCCC
Q 010341 90 SFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSP 145 (512)
Q Consensus 90 ~~p~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~y~~~~ 145 (512)
+.++....||++||.+|+++|+.||.+||..||++|++||+.||+.||.++++.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 34577889999999999999999999999999999999999999999999988764
No 7
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-12 Score=102.75 Aligned_cols=57 Identities=26% Similarity=0.719 Sum_probs=51.1
Q ss_pred CCCCCcCCcccccCccC-CCCCeeEEcCCCCCcccchhhhcccccccCCCCCCCeeeec
Q 010341 30 AGEGKRALYHCNYCNKD-ITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 87 (512)
Q Consensus 30 ~~~~~~~~~~C~~C~~~-i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~ 87 (512)
++++....+.||+|+.. |.+ +||+|++|+|||||..||..|.+.+.|+++|+|+.+.
T Consensus 4 ~~~~v~H~~~Cd~C~~~pi~G-~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 4 GSSGVFHPVECSYCHSESMMG-FRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp CSSSCCSCSCCSSSCCCSSCS-CEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CcCCceeCCCCcCCCCcceec-ceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 44555666899999986 887 9999999999999999999999999999999999885
No 8
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.11 E-value=6.1e-11 Score=97.59 Aligned_cols=56 Identities=30% Similarity=0.632 Sum_probs=50.1
Q ss_pred CCcccccCcc-CCCCCeeEEcCCCCC---cccchhhhcccccccCCCCCCCeeeecCCCCC
Q 010341 36 ALYHCNYCNK-DITGKIRIKCAVCPD---FDLCIECFSVGVEVHPHKSNHPYRVMDNLSFP 92 (512)
Q Consensus 36 ~~~~C~~C~~-~i~~~~ri~C~~C~d---~dLC~~CF~~G~e~~~H~~~H~y~vi~~~~~p 92 (512)
..+.||+|+. .|.+ +||+|.+|+| ||||..||..|.+...|+++|.|++|.....|
T Consensus 20 ~~~~Cd~C~~~pI~G-~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~p 79 (82)
T 2fc7_A 20 VGFKCDNCGIEPIQG-VRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSGP 79 (82)
T ss_dssp SSCCCSSSCCSSEES-CEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCCC
T ss_pred CcCCCCCCCCCccee-ceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCCCC
Confidence 3678999997 6887 9999999999 99999999999999999999999999765544
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.10 E-value=9.8e-11 Score=87.90 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=43.4
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 95 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
...||.+|+..|+++|..||.++|..||.+|++||+.||+.||.++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5689999999999999999988999999999999999999999775
No 10
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.08 E-value=1.2e-10 Score=87.56 Aligned_cols=47 Identities=26% Similarity=0.579 Sum_probs=43.7
Q ss_pred cCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 94 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 94 ~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
....||.+|+..|+++|..||.++|..||.+|++||+.||+.||.++
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35689999999999999999977999999999999999999999765
No 11
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.05 E-value=2.3e-10 Score=86.30 Aligned_cols=46 Identities=24% Similarity=0.532 Sum_probs=43.3
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhC--CCCHHHHHHHHHhh
Q 010341 95 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNV 140 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg--~rt~~ec~~hy~~~ 140 (512)
...||++||..|+++|+.||.++|..||.+++ +||+.||+++|.++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 35799999999999999999999999999999 99999999999875
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.04 E-value=3.2e-10 Score=87.68 Aligned_cols=48 Identities=19% Similarity=0.406 Sum_probs=44.8
Q ss_pred ccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 93 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
+....||.+||.+|+++|..||.++|..||.+|++||+.||+.||.++
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 456789999999999999999988999999999999999999999765
No 13
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=3e-10 Score=91.78 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=46.7
Q ss_pred ccCCCCCchhHHHHHHHHHHhCC-----CChHHHHHHhCCCCHHHHHHHHHhhccC
Q 010341 93 LICPDWNADDEILLLEGIEMYGL-----GNWAEIAEHVGTKTKELCIEHYTNVYMN 143 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~-----gnW~~IA~~vg~rt~~ec~~hy~~~y~~ 143 (512)
+....||.+|+.+|+++|..||. ++|..||.+|++||..||+.||.+++..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999996 7899999999999999999999888754
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=9e-10 Score=87.80 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=45.0
Q ss_pred ccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 93 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
+-...||.+|+.+|+++|..||.++|..||.+|++||+.||+.||.++
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 456789999999999999999988999999999999999999999775
No 15
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=98.97 E-value=1.7e-10 Score=97.90 Aligned_cols=56 Identities=29% Similarity=0.700 Sum_probs=47.7
Q ss_pred CcccccCcc-CCCCCeeEEcCCCCCcccchhhhcccccccCCCCCCCeeeecCCCCCccCCCCCchhH
Q 010341 37 LYHCNYCNK-DITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDE 103 (512)
Q Consensus 37 ~~~C~~C~~-~i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~~~~~p~~~~~Wt~~Ee 103 (512)
.+.||+|+. .|.+ .||+|++|+|||||..||..|. | ..|.|+.|... ...|++.|+
T Consensus 31 gv~Cd~C~~~pI~G-~RykC~~C~d~DLC~~C~~~~~----H-~~H~f~~i~~~-----~~~w~~~e~ 87 (98)
T 2dip_A 31 GIPCNNCKQFPIEG-KCYKCTECIEYHLCQECFDSYC----H-LSHTFTFREKR-----NQKWRSLEK 87 (98)
T ss_dssp CCCCSSSCCSSCCS-CEEEESSSSSCEEEHHHHHTTS----G-GGSCEEECCSS-----SCCCEECCC
T ss_pred CCCCcCCCCCCccc-CeEECCCCCCccHHHHHHccCC----C-CCCCeeEecCC-----CCCCccccc
Confidence 389999997 5887 9999999999999999999985 8 79999998763 346988764
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.96 E-value=9.6e-10 Score=88.18 Aligned_cols=48 Identities=17% Similarity=0.448 Sum_probs=44.8
Q ss_pred ccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 010341 93 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 141 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~y 141 (512)
+....||.+|+.+|++++..|| .+|..||.+|++||..||+.||..++
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~r~~~~l 54 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYF 54 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 5578999999999999999999 59999999999999999999998775
No 17
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.95 E-value=9e-10 Score=86.43 Aligned_cols=47 Identities=21% Similarity=0.553 Sum_probs=43.5
Q ss_pred cCCCCCchhHHHHHHHHHHhCCCChHHHHHHhC--CCCHHHHHHHHHhh
Q 010341 94 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNV 140 (512)
Q Consensus 94 ~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg--~rt~~ec~~hy~~~ 140 (512)
-...||++||..|+++|+.||.++|..||++++ +||+.||+++|.++
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999999977 89999999999765
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.92 E-value=1.2e-09 Score=86.87 Aligned_cols=48 Identities=23% Similarity=0.481 Sum_probs=44.8
Q ss_pred cCCCCCchhHHHHHHHHHHhCCCChHHHHHHhC--CCCHHHHHHHHHhhc
Q 010341 94 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNVY 141 (512)
Q Consensus 94 ~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg--~rt~~ec~~hy~~~y 141 (512)
-...||.+|+..|+++|+.||.++|..||.+++ +||..||+.+|.++.
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 457899999999999999999999999999999 999999999998763
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.87 E-value=1.3e-09 Score=91.64 Aligned_cols=59 Identities=25% Similarity=0.534 Sum_probs=49.4
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhh-----ccCCCCCCCCCCc
Q 010341 95 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV-----YMNSPFFPLPDMS 153 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~---gnW~~IA~~vg~rt~~ec~~hy~~~-----y~~~~~~plp~~~ 153 (512)
...||.+|+.+|++|+..||. ..|+.||.+|++||..||+.||..+ .+.+...|+|...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~ 74 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYR 74 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 568999999999999999984 4599999999999999999999987 6777778888764
No 20
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.84 E-value=1.4e-09 Score=87.41 Aligned_cols=51 Identities=27% Similarity=0.497 Sum_probs=45.0
Q ss_pred ccCCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhhccCC
Q 010341 93 LICPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNVYMNS 144 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~---gnW~~IA~~vg~rt~~ec~~hy~~~y~~~ 144 (512)
+....||.+|+.+|++||..||. .+|..||.+|++||..||+.||..+ +..
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d 69 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSG 69 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHc
Confidence 45678999999999999999984 4799999999999999999999765 443
No 21
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.77 E-value=5.8e-09 Score=83.60 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=42.7
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 95 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~---gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
...||++|+.+|.+|+..|+. ++|+.||.+||+||++||+.||..+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999986 4799999999999999999999877
No 22
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=98.76 E-value=2.8e-09 Score=80.12 Aligned_cols=45 Identities=38% Similarity=0.938 Sum_probs=39.5
Q ss_pred cCCcccccCccCCCCCeeEEcCCCCCcccchhhhcccccccCCCCCCCeeeec
Q 010341 35 RALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 87 (512)
Q Consensus 35 ~~~~~C~~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~ 87 (512)
...+.||+|++++ + .||+|++|+|||||..||..+. | .|.+..|.
T Consensus 4 ~~~~~Cd~C~~~i-g-~R~~C~~C~dyDLC~~C~~~~~----H--~H~m~~~~ 48 (52)
T 1tot_A 4 RFVYTCNECKHHV-E-TRWHCTVCEDYDLCINCYNTKS----H--THKMVKWG 48 (52)
T ss_dssp SSCEEETTTTEEE-S-SEEEESSSSSCEECHHHHHHHC----C--CSSEEEEC
T ss_pred cCEEECCCCCCCC-c-ceEEcCCCCCchhHHHHHhCCC----C--CCceEEec
Confidence 4668999999996 4 8999999999999999999976 6 68888884
No 23
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.20 E-value=1.2e-09 Score=91.18 Aligned_cols=50 Identities=30% Similarity=0.486 Sum_probs=45.6
Q ss_pred CCCccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 90 SFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 90 ~~p~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
+.++....||.+|+.+|++++..|| .+|..||.+|++||..||+.||..+
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 4556788999999999999999999 5999999999999999999999754
No 24
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.8e-08 Score=79.24 Aligned_cols=47 Identities=26% Similarity=0.499 Sum_probs=42.0
Q ss_pred CccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 92 PLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 92 p~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
.+....||.+|+.+|+++++.|| .+|..||..+ +||+.||+.||..+
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~~~-gRt~~qcr~Rw~~~ 52 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMP-TQWRTIAPII-GRTAAQCLEHYEFL 52 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHHHH-SSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhccc-CcCHHHHHHHHHHH
Confidence 35678899999999999999999 5999999955 59999999999865
No 25
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.68 E-value=1.9e-08 Score=82.80 Aligned_cols=46 Identities=15% Similarity=0.341 Sum_probs=42.8
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHH----hCCCCHHHHHHHHHhhc
Q 010341 96 PDWNADDEILLLEGIEMYGLGNWAEIAEH----VGTKTKELCIEHYTNVY 141 (512)
Q Consensus 96 ~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~----vg~rt~~ec~~hy~~~y 141 (512)
..||.+||..|+++|+.||.|+|..|++. +.+||..+|+++|.++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnll 50 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 50 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHH
Confidence 36999999999999999999999999996 78999999999998864
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.67 E-value=2.2e-08 Score=86.25 Aligned_cols=46 Identities=20% Similarity=0.469 Sum_probs=43.2
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 010341 96 PDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 141 (512)
Q Consensus 96 ~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~y 141 (512)
..||.+|+..|+++|+.||.++|..||.+|++||+.||+.||.++.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 5799999999999999999889999999999999999999998753
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.65 E-value=2.3e-08 Score=85.61 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=44.2
Q ss_pred cCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 94 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 94 ~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
....||.+|+..|+++|+.||.++|..||.+|++||+.||+.||.++
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 45789999999999999999988999999999999999999999875
No 28
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.60 E-value=5.9e-08 Score=77.98 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=42.9
Q ss_pred CCccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHh
Q 010341 91 FPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 139 (512)
Q Consensus 91 ~p~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~ 139 (512)
..+....||.+||.+|++++..|| .+|..||+++ +||+.+|+.+|..
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-gRt~~q~knRw~~ 65 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRCRL 65 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-CCCHHHHHHHHHH
Confidence 345678999999999999999999 6799999999 9999999999974
No 29
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.58 E-value=3.1e-08 Score=88.32 Aligned_cols=47 Identities=19% Similarity=0.377 Sum_probs=44.1
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 010341 95 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 141 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~y 141 (512)
.+.||.+|+.+|+++|..||.+||..||.+|++||+.||+.||.++.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 46799999999999999999999999999999999999999998754
No 30
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=6.6e-08 Score=74.98 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=41.4
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHh
Q 010341 95 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 139 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~ 139 (512)
...||++|..+|++++..|| .+|..||.+|++||..||+.||..
T Consensus 12 ~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHH
Confidence 46799999999999999999 899999999999999999999964
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.56 E-value=8.2e-08 Score=85.16 Aligned_cols=48 Identities=25% Similarity=0.602 Sum_probs=44.8
Q ss_pred ccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 93 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
+....||.+|+..|+++|+.||.++|..||.+|++||+.+|+.||.++
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNH 72 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHh
Confidence 456889999999999999999988999999999999999999999875
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.47 E-value=1.7e-07 Score=83.05 Aligned_cols=48 Identities=15% Similarity=0.376 Sum_probs=44.2
Q ss_pred ccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 010341 93 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 141 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~y 141 (512)
.-...||.+|+..|+++|+.||. ||..||++|++||+.||+.||.++.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 44678999999999999999995 9999999999999999999998764
No 33
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.47 E-value=2.1e-07 Score=80.08 Aligned_cols=47 Identities=17% Similarity=0.488 Sum_probs=43.6
Q ss_pred ccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 93 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
+...+||.+|+..|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999 7999999999999999999999764
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.46 E-value=1.7e-07 Score=80.08 Aligned_cols=47 Identities=19% Similarity=0.497 Sum_probs=43.5
Q ss_pred ccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 93 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
+....||.+|+..|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4567899999999999999999 7999999999999999999999754
No 35
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.41 E-value=2.6e-07 Score=81.77 Aligned_cols=47 Identities=26% Similarity=0.551 Sum_probs=43.4
Q ss_pred ccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 93 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
+....||.+||..|++++..|| .+|..||.+|++||..+|+.||..+
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3457899999999999999999 8999999999999999999999764
No 36
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.41 E-value=3.1e-07 Score=87.99 Aligned_cols=50 Identities=18% Similarity=0.468 Sum_probs=44.9
Q ss_pred CCccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 010341 91 FPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 141 (512)
Q Consensus 91 ~p~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~y 141 (512)
.+-....||.+|..++++|+..|| .||..||++||+||..||+.||+++-
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 334567899999999999999999 89999999999999999999998653
No 37
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.40 E-value=3.3e-07 Score=80.51 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=44.3
Q ss_pred cCCCCCchhHHHHHHHHHHhCCCChHHHHHHh----CCCCHHHHHHHHHhhc
Q 010341 94 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVY 141 (512)
Q Consensus 94 ~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~v----g~rt~~ec~~hy~~~y 141 (512)
-...||.+|+..|+++|+.||.|+|..|+.+. .+||..+|+++|.++.
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnll 81 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 81 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999986 6899999999998875
No 38
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.38 E-value=2.7e-07 Score=79.13 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=45.2
Q ss_pred cCCCCCchhHHHHHHHHHHhCCCChHHHHHHh----CCCCHHHHHHHHHhhccC
Q 010341 94 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVYMN 143 (512)
Q Consensus 94 ~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~v----g~rt~~ec~~hy~~~y~~ 143 (512)
-...||.+||..|++||+.||.|+|..|+... .+||..+|+++|.++.-.
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 45789999999999999999999999999976 689999999999887543
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.36 E-value=3.7e-07 Score=81.32 Aligned_cols=48 Identities=13% Similarity=0.385 Sum_probs=44.1
Q ss_pred ccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 010341 93 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 141 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~y 141 (512)
+....||.+|+..|++++..|| ++|..||.+|++||..+|+.||..+.
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l 99 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSI 99 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999 89999999999999999999997763
No 40
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.34 E-value=5.2e-07 Score=79.94 Aligned_cols=47 Identities=19% Similarity=0.504 Sum_probs=43.5
Q ss_pred ccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 93 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
+....||.+|+..|++++..|| .+|..||++|++||+.+|+.||..+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-SCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHC-cCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999 7999999999999999999999754
No 41
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.31 E-value=1.3e-06 Score=70.03 Aligned_cols=45 Identities=18% Similarity=0.426 Sum_probs=40.6
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 95 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~---gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
...||.+|+.+|..|+..|+- +.|+.||.++ +||.+||+.||..+
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 568999999999999999984 3599999999 59999999999865
No 42
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.31 E-value=4.4e-07 Score=79.66 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=44.4
Q ss_pred cCCCCCchhHHHHHHHHHHhCCCChHHHHHHh----CCCCHHHHHHHHHhhc
Q 010341 94 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVY 141 (512)
Q Consensus 94 ~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~v----g~rt~~ec~~hy~~~y 141 (512)
-...||.+||..|+++|+.||.|+|..|+.+. .+||..+|+++|.++-
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnll 67 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 67 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999996 6899999999998764
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.27 E-value=9.6e-07 Score=81.07 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=44.5
Q ss_pred ccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 93 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
+....||.+|+..|++++..||.++|..||.+|++||+.+|+.||.++
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 446789999999999999999977899999999999999999999775
No 44
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=4.4e-06 Score=65.12 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=41.7
Q ss_pred ccCCCCCchhHHHHHHHHHHhCCCChHHHHHH-hCCCCHHHHHHHHHh
Q 010341 93 LICPDWNADDEILLLEGIEMYGLGNWAEIAEH-VGTKTKELCIEHYTN 139 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~-vg~rt~~ec~~hy~~ 139 (512)
+....||++|-.++.+|+..|| -||..|+.+ |++||..||+.+|..
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 3457899999999999999999 799999996 999999999999853
No 45
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.07 E-value=3.2e-06 Score=77.54 Aligned_cols=47 Identities=19% Similarity=0.497 Sum_probs=43.6
Q ss_pred ccCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 93 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 93 ~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
+-..+||.+|+..|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHC-CCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999 7999999999999999999999754
No 46
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.97 E-value=7e-06 Score=87.23 Aligned_cols=47 Identities=19% Similarity=0.507 Sum_probs=43.5
Q ss_pred cCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 010341 94 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 141 (512)
Q Consensus 94 ~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~y 141 (512)
....||.+|-.++++||..|| .||..||++|||||..||+.||.++.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 457899999999999999999 79999999999999999999997653
No 47
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.90 E-value=2.3e-06 Score=68.00 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=39.3
Q ss_pred CCCCCchhHHHHHHHHHHhCCC---ChHHHHHHhCCCCHHHHHHHHH
Q 010341 95 CPDWNADDEILLLEGIEMYGLG---NWAEIAEHVGTKTKELCIEHYT 138 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~g---nW~~IA~~vg~rt~~ec~~hy~ 138 (512)
...||.+|..+|-.||.+|+-+ .|+.||..||+||++||+.||.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4579999999999999999854 6999999999999999999984
No 48
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.88 E-value=1.4e-05 Score=63.51 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=40.7
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHH-hCCCCHHHHHHHHHh
Q 010341 95 CPDWNADDEILLLEGIEMYGLGNWAEIAEH-VGTKTKELCIEHYTN 139 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~-vg~rt~~ec~~hy~~ 139 (512)
...||++|-.++.+|+..|| -||..|+.+ |++||..||+.+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 35799999999999999999 799999995 999999999999974
No 49
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.85 E-value=2e-05 Score=60.89 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=41.4
Q ss_pred cCCCCCchhHHHHHHHHHHhCCCChHHHHH---HhCCCCHHHHHHHHHhh
Q 010341 94 ICPDWNADDEILLLEGIEMYGLGNWAEIAE---HVGTKTKELCIEHYTNV 140 (512)
Q Consensus 94 ~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~---~vg~rt~~ec~~hy~~~ 140 (512)
-...||.+|+..|+++|+.||- +|..|+. ++..||.-..+++|.++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHH
Confidence 4678999999999999999995 9999995 66789999999999875
No 50
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.75 E-value=2.9e-05 Score=65.22 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=41.4
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHh
Q 010341 95 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 139 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~ 139 (512)
...||++|..++.+++..|| .+|..||++|++||..||+.+|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46799999999999999999 899999999999999999999963
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.58 E-value=3.8e-05 Score=74.31 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=41.7
Q ss_pred cCCCCCchhHHHHHHHHHHhCCCC-----hHHHHHHhCCCCHHHHHHHHHhh
Q 010341 94 ICPDWNADDEILLLEGIEMYGLGN-----WAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 94 ~~~~Wt~~Ee~~Lleai~~~G~gn-----W~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
-...||.+|+..|++++..+|-.+ |..||.++.+||..+|+.||..+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVY 58 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456899999999999999998432 99999999999999999999765
No 52
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=96.33 E-value=0.011 Score=50.30 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=60.7
Q ss_pred cCCCCHHHHHHHHHh------CCCchHHHHHHHHHHHHHHh--CCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 443 TQLLSEAEKRLCCEI------RLAPPLYLRMQEVMSREIFS--GNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 443 ~~lLs~~E~~LCs~l------rL~P~~YL~iK~~LirE~~~--~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+..++-|++.+-.+ .=.|..||.|+..+|.-+.. .-.|+.+++++.+.-|++-+.||+.||-.-|+|+
T Consensus 22 ~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~FLe~wGLIN 98 (104)
T 2fq3_A 22 LEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLIN 98 (104)
T ss_dssp TTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHHHHHTTSSS
T ss_pred cccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHHHHHHcCeec
Confidence 567889999988875 34699999999999998884 3479999999999999999999999999999995
No 53
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.29 E-value=0.0054 Score=51.17 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=41.4
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHh-----CCCCHHHHHHHHHhh
Q 010341 95 CPDWNADDEILLLEGIEMYGLGNWAEIAEHV-----GTKTKELCIEHYTNV 140 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~v-----g~rt~~ec~~hy~~~ 140 (512)
..+||.+|+..|++.++.|| ..|.-|++.. ++||.++.+.+|..+
T Consensus 30 ~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 37999999999999999999 5899999999 479999999999875
No 54
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.09 E-value=0.0046 Score=47.29 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=40.4
Q ss_pred CCCCCchhHHHHHHHHHHh--------CCCChHHHHH-HhCCCCHHHHHHHHHhh
Q 010341 95 CPDWNADDEILLLEGIEMY--------GLGNWAEIAE-HVGTKTKELCIEHYTNV 140 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~--------G~gnW~~IA~-~vg~rt~~ec~~hy~~~ 140 (512)
+..||++||..|++.|..| |-.-|+++|+ .+..+|-..|++||.+.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~ 56 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHH
Confidence 3579999999999999999 4334999999 89999999999999874
No 55
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.93 E-value=0.0047 Score=61.24 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=28.6
Q ss_pred CccCCCCCchhHHHHHHHHHHhCCCChHHHHH
Q 010341 92 PLICPDWNADDEILLLEGIEMYGLGNWAEIAE 123 (512)
Q Consensus 92 p~~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~ 123 (512)
+-+.-.|+++|+..||-||..||+|+|+.|-.
T Consensus 165 ~~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 165 QNWSSNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp TTSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 34567899999999999999999999999955
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.87 E-value=0.012 Score=48.44 Aligned_cols=44 Identities=16% Similarity=0.351 Sum_probs=40.6
Q ss_pred CCCchhHHHHHHHHHHhCC--CChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 97 DWNADDEILLLEGIEMYGL--GNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 97 ~Wt~~Ee~~Lleai~~~G~--gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
-||.+++..+|.+.+.-|. .-|..||..+|.||++|+.++|.++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4999999999999999984 3699999999999999999999875
No 57
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.45 E-value=0.011 Score=56.14 Aligned_cols=31 Identities=39% Similarity=0.717 Sum_probs=27.7
Q ss_pred cCCCCCchhHHHHHHHHHHhCCCChHHHHHH
Q 010341 94 ICPDWNADDEILLLEGIEMYGLGNWAEIAEH 124 (512)
Q Consensus 94 ~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~ 124 (512)
+...||++|+..||-||..||+|+|+.|-.-
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 3567999999999999999999999999663
No 58
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.37 E-value=0.047 Score=46.97 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=60.3
Q ss_pred ccCCCCHHHHHHHHHh-----CCCchHHHHHHHHHHHHHH--hCCCcCHHHHhhhhc--cCchhHHHHHHHHHHCCCCC
Q 010341 442 ETQLLSEAEKRLCCEI-----RLAPPLYLRMQEVMSREIF--SGNVNNKADAHHLFK--IEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 442 g~~lLs~~E~~LCs~l-----rL~P~~YL~iK~~LirE~~--~~G~lk~~~A~~l~k--iD~~K~~rIydFlv~~Gwi~ 511 (512)
..+..++-|++.+-.+ .=-|..||.|++.||.-+. ..-.|+..+|++.++ -|++-+.||+.||-..|+|+
T Consensus 23 ~~~~ih~iEk~~lPefF~g~~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~gDv~~i~RVh~FLe~wGLIN 101 (111)
T 2dce_A 23 DRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAIN 101 (111)
T ss_dssp CSSCCCHHHHTTSGGGGSCCSSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSSCHHHHHHHHHHHHHHSSSS
T ss_pred CcccCCHHHHHhChHHhcCCcccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhcccccCHHHHHHHHHHHHHcCeee
Confidence 4677888888888765 4489999999999998887 345799999999884 79999999999999999995
No 59
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.18 E-value=0.015 Score=58.52 Aligned_cols=48 Identities=29% Similarity=0.455 Sum_probs=42.6
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhccCC
Q 010341 96 PDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNS 144 (512)
Q Consensus 96 ~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~y~~~ 144 (512)
.+||-.+-..++.|++.||-++|+.||..|++||++|++ +|.++|+..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~-~Y~~vFw~r 158 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVI-EYNAVFWER 158 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHH-HHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHH-HHHHHHHHh
Confidence 479999999999999999999999999999999999995 555666554
No 60
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=94.86 E-value=0.014 Score=47.63 Aligned_cols=45 Identities=16% Similarity=0.405 Sum_probs=37.4
Q ss_pred CCCCchhHHHHHHHHHHhCC---------CChHHHHHHhC----CCCHHHHHHHHHhh
Q 010341 96 PDWNADDEILLLEGIEMYGL---------GNWAEIAEHVG----TKTKELCIEHYTNV 140 (512)
Q Consensus 96 ~~Wt~~Ee~~Lleai~~~G~---------gnW~~IA~~vg----~rt~~ec~~hy~~~ 140 (512)
..||.+|.+.||++...... .-|+.||+.|. .+|+.||+..|.++
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 57999999999999865321 15999999986 69999999999775
No 61
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.49 E-value=0.06 Score=41.77 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=41.4
Q ss_pred CCCCCchhHHHHHHHHHHhCCCC--hHHHHHHhC--CCCHHHHHHHHHhhcc
Q 010341 95 CPDWNADDEILLLEGIEMYGLGN--WAEIAEHVG--TKTKELCIEHYTNVYM 142 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~gn--W~~IA~~vg--~rt~~ec~~hy~~~y~ 142 (512)
.-.||.+....+++||+.+|.+. |..|.+.|+ +-|..++..|..+|.+
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999999432 789999998 5799999999988754
No 62
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.90 E-value=0.088 Score=43.75 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=41.0
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhC-----CCCHHHHHHHHHhh
Q 010341 95 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG-----TKTKELCIEHYTNV 140 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg-----~rt~~ec~~hy~~~ 140 (512)
..+||-+|+-.|++.++.|+ -.|--|++... .||.++.+.||..+
T Consensus 30 ~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 47899999999999999999 58999999874 69999999999876
No 63
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=92.64 E-value=0.013 Score=45.75 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=38.8
Q ss_pred CCCchhHHHHHHHHHHhCC--CChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 97 DWNADDEILLLEGIEMYGL--GNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 97 ~Wt~~Ee~~Lleai~~~G~--gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
-||.+||..+|..++.-|. .-|..||..+ +||++|+..+|.++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 5999999999999999984 2699999999 79999999999775
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=93.46 E-value=0.014 Score=62.16 Aligned_cols=46 Identities=15% Similarity=0.388 Sum_probs=0.0
Q ss_pred cCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 94 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 94 ~~~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
+...||.+|..++.+++..|| .||..|+++|++||..+|+.+|+..
T Consensus 188 ~~d~WT~eE~~lFe~al~~yG-KdF~~I~~~lp~Ksv~e~V~yYY~W 233 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHG-KTFHRIQQMLPDKSIASLVKFYYSW 233 (482)
T ss_dssp -----------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcC-ccHHHHHHHcCCCCHHHHHHHhccc
Confidence 456899999999999999999 8999999999999999999988653
No 65
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=90.05 E-value=0.22 Score=49.98 Aligned_cols=46 Identities=9% Similarity=0.188 Sum_probs=39.7
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHH------------HhCCCCHHHHHHHHHhh
Q 010341 95 CPDWNADDEILLLEGIEMYGL---GNWAEIAE------------HVGTKTKELCIEHYTNV 140 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~---gnW~~IA~------------~vg~rt~~ec~~hy~~~ 140 (512)
...||.+|+..||=++..||+ |+|+.|-. ++-+||+.|+..|-..+
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 578999999999999999999 99999974 44589999988776544
No 66
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=89.02 E-value=0.27 Score=39.29 Aligned_cols=42 Identities=31% Similarity=0.808 Sum_probs=31.1
Q ss_pred cCccCCC-CCeeEEcCCCC---CcccchhhhcccccccCCCCCCCeeeecC
Q 010341 42 YCNKDIT-GKIRIKCAVCP---DFDLCIECFSVGVEVHPHKSNHPYRVMDN 88 (512)
Q Consensus 42 ~C~~~i~-~~~ri~C~~C~---d~dLC~~CF~~G~e~~~H~~~H~y~vi~~ 88 (512)
.|+..+. +.+.|+|..|. ...||..||..+. |. +|.|.+...
T Consensus 6 ~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~----H~-gH~~~~~~s 51 (75)
T 3ny3_A 6 LCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSI----HR-DHRYRMTTS 51 (75)
T ss_dssp CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSG----GG-GSCEEEEEC
T ss_pred ccCCcccCCCEEEECccCCCCCCeeEChHHCCCCC----cC-CceEEEEEc
Confidence 3666653 55889999994 4569999999866 74 688988743
No 67
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=88.61 E-value=0.53 Score=38.22 Aligned_cols=42 Identities=29% Similarity=0.551 Sum_probs=31.3
Q ss_pred cCccCCC-CCeeEEcCCCC---CcccchhhhcccccccCCCCCCCeeeecC
Q 010341 42 YCNKDIT-GKIRIKCAVCP---DFDLCIECFSVGVEVHPHKSNHPYRVMDN 88 (512)
Q Consensus 42 ~C~~~i~-~~~ri~C~~C~---d~dLC~~CF~~G~e~~~H~~~H~y~vi~~ 88 (512)
.|+..+. +.+.|+|..|. ...||..||-.+. |. +|.|.+...
T Consensus 10 ~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~----H~-gH~~~~~~s 55 (82)
T 3nis_A 10 NCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKD----HV-NHHVCTDIC 55 (82)
T ss_dssp CCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGG----GT-TSCEEEEEC
T ss_pred CCCCcccCCCEEEEeeccCCCCCceEchhhCCCCC----cC-CceEEEEEe
Confidence 4776653 45889999994 4569999999866 74 788987643
No 68
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=88.44 E-value=0.35 Score=49.83 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=50.6
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHHhC-CCCHHHHHHHHHhhccCCCCCCCCCCccccc
Q 010341 96 PDWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYMNSPFFPLPDMSHVVG 157 (512)
Q Consensus 96 ~~Wt~~Ee~~Lleai~~~G~gnW~~IA~~vg-~rt~~ec~~hy~~~y~~~~~~plp~~~~~~~ 157 (512)
.+||-.+=..++.|++.||-++-+.||..|+ +||++|++ .|.++|.... -.+.+....++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry-~Ei~d~erii~ 184 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNI-ERIEDYEKYLK 184 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTC-SSCSCCTTTHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhh-hhhccHHHHHH
Confidence 4899999999999999999999999999998 99999999 7888888764 34555554443
No 69
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=87.86 E-value=0.27 Score=40.46 Aligned_cols=32 Identities=31% Similarity=0.713 Sum_probs=27.8
Q ss_pred CcccccCccCCCCCeeEEcCCCCCcccchhhhcc
Q 010341 37 LYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSV 70 (512)
Q Consensus 37 ~~~C~~C~~~i~~~~ri~C~~C~d~dLC~~CF~~ 70 (512)
.+.|+.|+....+ .+|+|..|. |+|-+.|...
T Consensus 47 ~~~C~~C~~~~~~-~~Y~C~~C~-f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTI-WSYHCDECD-FDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCS-CEEECTTTC-CCCCHHHHHC
T ss_pred CeEeCCCCCcCCC-cEEEcCCCC-CeEcHHhcCC
Confidence 4789999999876 899999995 9999999764
No 70
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=86.27 E-value=0.6 Score=43.90 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=36.8
Q ss_pred CCCCchhHHHHHHHHHHhC--CCChHHHHHHhC--CCCHHHHHHHH
Q 010341 96 PDWNADDEILLLEGIEMYG--LGNWAEIAEHVG--TKTKELCIEHY 137 (512)
Q Consensus 96 ~~Wt~~Ee~~Lleai~~~G--~gnW~~IA~~vg--~rt~~ec~~hy 137 (512)
.+||..|-..|+.|+..|| .+.|++|+.... .||.++++..+
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~ 53 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLG 53 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHH
Confidence 5799999999999999999 678999998754 89999998644
No 71
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=78.37 E-value=2.1 Score=44.03 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=38.2
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHh------------CCCCHHHHHHHHHh
Q 010341 95 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHV------------GTKTKELCIEHYTN 139 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G~---gnW~~IA~~v------------g~rt~~ec~~hy~~ 139 (512)
...||.+|+..||=++..||+ |+|+.|-..| -+||+.|+..|-..
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~t 287 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNT 287 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHH
Confidence 568999999999999999999 9999997654 37999998766543
No 72
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=77.69 E-value=1.5 Score=33.88 Aligned_cols=34 Identities=38% Similarity=0.812 Sum_probs=28.1
Q ss_pred cCCcccccCccCCCCCeeEEcCCCCCcccchhhhcccc
Q 010341 35 RALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGV 72 (512)
Q Consensus 35 ~~~~~C~~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~ 72 (512)
.....|.+|..+-+ ++|..|.+-..|..||-.+.
T Consensus 6 ee~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDAT----LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCC----EEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCe----EEecCCCCceehHHHHHHHc
Confidence 45678999999854 79999987667999999865
No 73
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=63.68 E-value=3 Score=31.65 Aligned_cols=31 Identities=26% Similarity=0.686 Sum_probs=25.0
Q ss_pred cccccCccCCCCCeeEEcCCCCCcccchhhhc
Q 010341 38 YHCNYCNKDITGKIRIKCAVCPDFDLCIECFS 69 (512)
Q Consensus 38 ~~C~~C~~~i~~~~ri~C~~C~d~dLC~~CF~ 69 (512)
..|.+|...+....+|+|..|. ...|..|=.
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~-~~FC~dCD~ 46 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQ-NVFCVDCDV 46 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTT-CCBCHHHHH
T ss_pred CcccccCcccCCCccEECCccC-cCcccchhH
Confidence 3599999998765679999997 668988843
No 74
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=63.36 E-value=2.9 Score=34.26 Aligned_cols=33 Identities=27% Similarity=0.815 Sum_probs=27.0
Q ss_pred CcccccCccCC----CCCeeEEcCCCCCcccchhhhcc
Q 010341 37 LYHCNYCNKDI----TGKIRIKCAVCPDFDLCIECFSV 70 (512)
Q Consensus 37 ~~~C~~C~~~i----~~~~ri~C~~C~d~dLC~~CF~~ 70 (512)
...|.+|+.++ ++.+++-|.+|. |-+|-.||-.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~-FPvCrpCyEY 52 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECG-FPACRPCYEY 52 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSC-CCCCHHHHHH
T ss_pred CCccccccCccccCCCCCEEEeeeccC-ChhhHHHHHH
Confidence 35799999764 455899999997 9999999975
No 75
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=53.54 E-value=15 Score=35.41 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=22.4
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 117 NWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 117 nW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
-|..||++..++|....+++|.++
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKf 196 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKF 196 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCChhhHHHHHHHH
Confidence 599999999999999999999865
No 76
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=51.93 E-value=17 Score=31.49 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=41.7
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCC
Q 010341 454 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 510 (512)
Q Consensus 454 Cs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi 510 (512)
...++|.|..|..+--+...+-..+|.++..+.-..+.+|..-+.++.+=|++.|||
T Consensus 26 l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glV 82 (148)
T 4fx0_A 26 LRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLV 82 (148)
T ss_dssp HGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSB
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCE
Confidence 456899999998776655444445677888888888899999999999999999998
No 77
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=50.40 E-value=14 Score=28.61 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 469 EVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 469 ~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
..++.-...+|.++..+.-..+.+...-+++..+-|.+.|+|.
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3444444466889999988889999999999999999999984
No 78
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=49.97 E-value=25 Score=29.90 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 449 AEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 449 ~E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.-...+..++|.|..|..+.-+ .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~~~~~~lt~~q~~iL~~l------~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 26 LLKDLQTEYGISAEQSHVLNML------SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH------HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEE
T ss_pred HHHHHhhcCCCCHHHHHHHHHH------HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3345567789999999887655 34678888888888999999999999999999984
No 79
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=49.16 E-value=25 Score=29.44 Aligned_cols=56 Identities=9% Similarity=0.158 Sum_probs=45.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+.+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 82 (142)
T 2bv6_A 27 NKVFKKYNLTYPQFLVLTILW-----DESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIK 82 (142)
T ss_dssp HHTHHHHTCCHHHHHHHHHHH-----HSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEE
T ss_pred HHHhhhcCCCHHHHHHHHHHH-----HcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 455678899998887665432 45678888888888999999999999999999984
No 80
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=48.05 E-value=39 Score=26.60 Aligned_cols=57 Identities=11% Similarity=0.234 Sum_probs=45.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
..+....+|.|..+..+..++ ..+|.++..+.-..+.+...-+.++.+-|.+.|||.
T Consensus 11 ~~~~~~~~l~~~~~~~l~~l~----~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~ 67 (109)
T 2d1h_A 11 DEIRCCYKITDTDVAVLLKMV----EIEKPITSEELADIFKLSKTTVENSLKKLIELGLVV 67 (109)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH----HHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhhcCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 445556788888877665544 136778988888889999999999999999999984
No 81
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=45.43 E-value=47 Score=28.43 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 450 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 450 E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+.|...++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 38 ~~~l~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~ 94 (162)
T 2fa5_A 38 AKVYGDRYGMAIPEWRVITILA-----LYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIR 94 (162)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHH-----HSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 4455577899999987765442 36778888888888999999999999999999984
No 82
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=44.95 E-value=32 Score=29.00 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=45.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+.+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 21 ~~~~~~~~lt~~q~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 76 (145)
T 3g3z_A 21 DKWIGQQDLNYNLFAVLYTLA-----TEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIE 76 (145)
T ss_dssp HHHHHTTTCCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 456778999999998776543 33458888888888999999999999999999984
No 83
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=43.94 E-value=34 Score=26.94 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCCC
Q 010341 464 YLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP 512 (512)
Q Consensus 464 YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~~ 512 (512)
|-..++.++ ..|.-+.+-...-|+|--|++.+|.|-|.+.|+|.|
T Consensus 12 y~~A~~~V~----~~~~aS~S~lQR~lrIGYnRAArlid~lE~~GiVgp 56 (73)
T 2ve8_A 12 YDEAVRFVT----ESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTP 56 (73)
T ss_dssp HHHHHHHHH----HHCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCC
T ss_pred HHHHHHHHH----hcCCccHHHHHHHHccChHHHHHHHHHHHHCCcCCc
Confidence 455555554 335556666667789999999999999999999975
No 84
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=43.73 E-value=48 Score=28.60 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=47.5
Q ss_pred CHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 447 SEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 447 s~~E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
...=......++|.|..|..+.-+- ..|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 32 ~~~~~~~l~~~glt~~q~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 91 (162)
T 3k0l_A 32 SKYLTEHLSALEISLPQFTALSVLA-----AKPNLSNAKLAERSFIKPQSANKILQDLLANGWIE 91 (162)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHH-----HCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeE
Confidence 3333445567899999988776432 45678888888888999999999999999999984
No 85
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=43.00 E-value=34 Score=28.41 Aligned_cols=55 Identities=9% Similarity=0.009 Sum_probs=44.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 452 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 452 ~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
+.+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~ 81 (142)
T 2fbi_A 27 PSLNQHGLTEQQWRVIRILR-----QQGEMESYQLANQACILRPSMTGVLARLERDGIVR 81 (142)
T ss_dssp HHHHHHTCCHHHHHHHHHHH-----HHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 34557899998887775442 34568888888889999999999999999999984
No 86
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=41.76 E-value=50 Score=27.64 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=42.9
Q ss_pred HHHHHH--hCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCE--IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~--lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+.+.. ++|.|..|..+.-+- ..|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 25 ~~~l~~~~~~lt~~~~~vL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 82 (142)
T 3ech_A 25 QSELDCQRLDLTPPDVHVLKLID-----EQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVR 82 (142)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHH-----HTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEE
T ss_pred HHHHhhccCCCCHHHHHHHHHHH-----hCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 445666 899999998776442 45678888888888999999999999999999984
No 87
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=41.74 E-value=52 Score=25.22 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=33.4
Q ss_pred CCCCCcCCcccccCccCCCCCeeEEcCCCCCcccchhhhcccccccCCCCCCCeeeec
Q 010341 30 AGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 87 (512)
Q Consensus 30 ~~~~~~~~~~C~~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~ 87 (512)
++..+....+|..|.+.+.- +-++| .|. ..+|.. -.++..|.=..+|+-+.
T Consensus 8 ~~~~~~~~~rC~~C~kkvgl-~~f~C-rCg-~~FC~~----HR~~e~H~C~fDyk~~g 58 (64)
T 1wg2_A 8 PSRPVRPNNRCFSCNKKVGV-MGFKC-KCG-STFCGS----HRYPEKHECSFDFKEVG 58 (64)
T ss_dssp SSCCSCCSCSCTTTCCCCTT-SCEEC-TTS-CEECSS----SCSSTTTTCCCCCSCSC
T ss_pred CCCCCCcCCcChhhCCcccc-cCeEe-ecC-CEeccc----CCCccccCCCcchhHHh
Confidence 34445566789999997653 46899 787 445643 44555676666776554
No 88
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=40.67 E-value=38 Score=28.33 Aligned_cols=58 Identities=5% Similarity=0.024 Sum_probs=46.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
......++|.|..|..+.-+.- ..+|.++..+....+.++..-+.++.+=|++.|||.
T Consensus 27 ~~~~~~~~lt~~q~~vL~~l~~---~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 84 (127)
T 2frh_A 27 SLIKKEFSISFEEFAVLTYISE---NKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFD 84 (127)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHH---TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHcCCCHHHHHHHHHHHh---ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4556788999999987765431 122678888888888999999999999999999995
No 89
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=40.53 E-value=33 Score=28.69 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=45.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
...+..++|.|..|..+..+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 19 ~~~~~~~~lt~~~~~iL~~l-----~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~ 74 (144)
T 1lj9_A 19 NIEFKELSLTRGQYLYLVRV-----CENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIY 74 (144)
T ss_dssp HHHTGGGTCTTTHHHHHHHH-----HHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 34556788999988776543 245678888888889999999999999999999984
No 90
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=40.39 E-value=48 Score=26.01 Aligned_cols=55 Identities=7% Similarity=0.116 Sum_probs=43.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 452 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 452 ~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
+....++|.|..+..+.-+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 11 ~~l~~~~l~~~~~~il~~l-----~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 11 KALEKLSFKPSDVRIYSLL-----LERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp HHHHHTCCCHHHHHHHHHH-----HHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHH-----HHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4566888888877665433 234668888888888999999999999999999984
No 91
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=39.21 E-value=56 Score=27.05 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=44.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCC-CcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGN-VNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G-~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
...+..++|.|..|..+.-+.- .+| .++..+....+.++..-+.++.+-|++.|||.
T Consensus 24 ~~~~~~~~lt~~~~~iL~~l~~----~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 81 (141)
T 3bro_A 24 DIFAKKYDLTGTQMTIIDYLSR----NKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLY 81 (141)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHH----TTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHH----CCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEE
Confidence 4455678899988877654321 232 68888888889999999999999999999983
No 92
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=39.18 E-value=44 Score=28.51 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=46.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
+.|...++|.|..|..+.-+- ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 37 ~~l~~~~~l~~~~~~iL~~L~----~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~ 93 (160)
T 3boq_A 37 RQLLDETGLSLAKFDAMAQLA----RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVV 93 (160)
T ss_dssp HHHHHHHSCCHHHHHHHHHHH----HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEE
T ss_pred HHHHHhcCCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 445557899999988775441 246678888888889999999999999999999984
No 93
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=38.85 E-value=36 Score=28.11 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=43.9
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhh-hhccCchhHHHHHHHHHHCCCC
Q 010341 453 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHH-LFKIEPSKIDRVYDMLVKKGLA 510 (512)
Q Consensus 453 LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~-l~kiD~~K~~rIydFlv~~Gwi 510 (512)
=|+..+|.+..|-.+.. ..++|..+.++... ...+|.+-+++=...|++.|||
T Consensus 8 ~~~~~~L~~~QfsiL~~-----L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlV 61 (95)
T 1bja_A 8 KASNDVLNEKTATILIT-----IAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLV 61 (95)
T ss_dssp HHTTTSSCHHHHHHHHH-----HHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSE
T ss_pred hHHhcCCCHHHHHHHHH-----HHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCe
Confidence 37788888888865433 34777899988888 7789999999999999999998
No 94
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=38.79 E-value=41 Score=27.80 Aligned_cols=53 Identities=8% Similarity=0.044 Sum_probs=42.7
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 454 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 454 Cs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
+..++|.|..|..+.-+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~l~~~~~~iL~~l-----~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 78 (139)
T 3bja_A 26 IEQYDISYVQFGVIQVL-----AKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVM 78 (139)
T ss_dssp TGGGTCCHHHHHHHHHH-----HHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEE
T ss_pred hhhcCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCee
Confidence 44567888887766543 246778888888889999999999999999999984
No 95
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=38.70 E-value=49 Score=27.73 Aligned_cols=54 Identities=22% Similarity=0.179 Sum_probs=40.4
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 457 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 457 lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
++|.+..+-.++. |+.-...++.++..+.-..+.++..-+.++.+-|.+.|||.
T Consensus 9 ~~lt~~~~~~L~~-l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 9 SNLSRREFSYLLT-IKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp --CCHHHHHHHHH-HHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hhcCHHHHHHHHH-HHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEE
Confidence 4567777766663 32222356788988888888999999999999999999984
No 96
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=38.64 E-value=43 Score=28.47 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=45.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
......++|.|..|..+.-+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 31 ~~~~~~~~lt~~q~~iL~~l~-----~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 86 (149)
T 4hbl_A 31 EKKLKQFGITYSQYLVMLTLW-----EENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVK 86 (149)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 344567899999988776442 35778888888888999999999999999999984
No 97
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=38.22 E-value=44 Score=27.82 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=46.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
...+..++|.|..|..+..+. ..+|.++..+....+.++..-+.++.+=|++.|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l~----~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 27 DRRLSHLGLSQARWLVLLHLA----RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVR 83 (146)
T ss_dssp HHHTGGGCCTTTHHHHHHHHH----HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHCCCCHHHHHHHHHHH----HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCee
Confidence 344567789999987765442 256788888888889999999999999999999984
No 98
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=38.16 E-value=43 Score=27.64 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=43.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 452 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 452 ~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 20 ~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~ 74 (138)
T 3bpv_A 20 RELGHLNLTDAQVACLLRIH-----REPGIKQDELATFFHVDKGTIARTLRRLEESGFIE 74 (138)
T ss_dssp HHSGGGTCCHHHHHHHHHHH-----HSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34456788888887665332 45778888888888999999999999999999984
No 99
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=38.04 E-value=44 Score=28.27 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 448 EAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 448 ~~E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
..=.+....++|.|..|..+.-+. ..++.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 26 ~~~~~~l~~~glt~~q~~vL~~l~----~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 85 (150)
T 3fm5_A 26 GAVNKALVPTGLRVRSYSVLVLAC----EQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVV 85 (150)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHH----HSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH----hCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 333455667899999988776332 244567888888888999999999999999999984
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=37.66 E-value=31 Score=29.21 Aligned_cols=36 Identities=17% Similarity=0.401 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCC--------ChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 104 ILLLEGIEMYGLG--------NWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 104 ~~Lleai~~~G~g--------nW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
..|..+|...| | .|.+||..+|-.+....+.||.++
T Consensus 52 ~~Ly~~V~~~G-G~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~ 95 (116)
T 2li6_A 52 FYLYMLVQKFG-GADQVTRTQQWSMVAQRLQISDYQQLESIYFRI 95 (116)
T ss_dssp THHHHHHHHHT-SHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhc-CHHHccccCcHHHHHHHhCCChHHHHHHHHHHH
Confidence 45666777776 4 799999999976677888888775
No 101
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=37.58 E-value=36 Score=28.54 Aligned_cols=53 Identities=13% Similarity=0.268 Sum_probs=42.2
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 454 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 454 Cs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
+..++|.|..|..+.-+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 30 ~~~~~lt~~~~~iL~~l~-----~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 82 (143)
T 3oop_A 30 IASYDVTPEQWSVLEGIE-----ANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIV 82 (143)
T ss_dssp TTTSSSCHHHHHHHHHHH-----HHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hhhCCCCHHHHHHHHHHH-----HcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCee
Confidence 345678888887765442 23778888888888999999999999999999984
No 102
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=37.54 E-value=40 Score=27.27 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=34.5
Q ss_pred HHHH-hCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 473 REIF-SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 473 rE~~-~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+++ ..|.++.++.-..|.+...-+++..+.|.++|+|.
T Consensus 8 l~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 8 RDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3444 78999999999999999999999999999999873
No 103
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=36.89 E-value=58 Score=27.39 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=45.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
...+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 30 ~~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~ 85 (152)
T 3bj6_A 30 ERGTLREGVTVGQRAILEGLS-----LTPGATAPQLGAALQMKRQYISRILQEVQRAGLIE 85 (152)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCee
Confidence 345567899998887765432 45678888888888999999999999999999983
No 104
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=36.89 E-value=52 Score=27.77 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 445 LLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 445 lLs~~E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+...=......++|.|..|..+.-+.- ..+|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 25 ~~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 88 (148)
T 3jw4_A 25 KLKTSADARLAELGLNSQQGRMIGYIYE---NQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIE 88 (148)
T ss_dssp HTTHHHHHHHHHTTCCHHHHHHHHHHHH---HTTTCCCHHHHHHC------CHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHh---CCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 3555556667789999999987765432 122678888888888999999999999999999985
No 105
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=36.24 E-value=60 Score=27.45 Aligned_cols=56 Identities=18% Similarity=0.094 Sum_probs=45.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
...+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 31 ~~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 86 (154)
T 2qww_A 31 DQNAASLGLTIQQLAMINVIY-----STPGISVADLTKRLIITGSSAAANVDGLISLGLVV 86 (154)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH-----HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345667889998887765432 45678888888888999999999999999999984
No 106
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=35.83 E-value=51 Score=26.61 Aligned_cols=51 Identities=14% Similarity=0.019 Sum_probs=37.2
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 458 RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 458 rL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
+|.|..++.++-+- ++-+.| +.-.+...-+.++...+.+|.+-|.+.|||.
T Consensus 17 ~Lt~~q~~Vl~~I~--~~g~~g-i~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 17 GSDNQEKLVYQIIE--DAGNKG-IWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CSCSSHHHHHHHHH--HHCTTC-EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHH--HcCCCC-cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45677777776543 222334 5555666667899999999999999999985
No 107
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=35.44 E-value=58 Score=27.14 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 450 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 450 E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
-...+...+|.|..|..+..+ . +|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 26 ~~~~~~~~~l~~~~~~iL~~l-----~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~ 81 (146)
T 2gxg_A 26 LNRRLGELNLSYLDFLVLRAT-----S-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVV 81 (146)
T ss_dssp HHHHHHTTTCCHHHHHHHHHH-----T-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHH-----h-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEE
Confidence 345667788888888766543 2 6778888888888999999999999999999984
No 108
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=34.98 E-value=48 Score=28.43 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 448 EAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 448 ~~E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
..=.+.+..++|.|..|..+.-+. .+|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 37 ~~~~~~l~~~~lt~~q~~vL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 95 (159)
T 3s2w_A 37 IYIGKKIEPYGIGSGQFPFLMRLY-----REDGINQESLSDYLKIDKGTTARAIQKLVDEGYVF 95 (159)
T ss_dssp HHHHHHHGGGTCCTTTHHHHHHHH-----HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 333455667899999997776442 35778888888888999999999999999999984
No 109
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=34.74 E-value=15 Score=28.61 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCcchHHHH
Q 010341 355 QDLKEARAAGCRTSAEAD 372 (512)
Q Consensus 355 ~~L~~~R~~Gittl~e~~ 372 (512)
.-|..|++.||+|+++++
T Consensus 60 ~Il~~W~~~gi~T~e~a~ 77 (78)
T 2zc2_A 60 AILRNWRHEGISTLRQVE 77 (78)
T ss_dssp HHHHHHHHTTCCSHHHHC
T ss_pred HHHHHHHHcCCCCHHHHh
Confidence 347899999999999874
No 110
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=34.47 E-value=44 Score=26.32 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=34.0
Q ss_pred HHHH-hCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCC
Q 010341 473 REIF-SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 510 (512)
Q Consensus 473 rE~~-~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi 510 (512)
.+++ .+|.++.++.-..|.+...-+++..+.|.++|.|
T Consensus 8 l~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 8 RDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 3444 7899999999999999999999999999999987
No 111
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=33.89 E-value=35 Score=25.30 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHhCCCChHHHHHHhCC
Q 010341 101 DDEILLLEGIEMYGLGNWAEIAEHVGT 127 (512)
Q Consensus 101 ~Ee~~Lleai~~~G~gnW~~IA~~vg~ 127 (512)
-|...+..+++.+| ||+..+|+.+|-
T Consensus 19 ~E~~~i~~aL~~~~-gn~~~aA~~LGi 44 (63)
T 3e7l_A 19 FEKIFIEEKLREYD-YDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCc
Confidence 46677889999999 999999999983
No 112
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=33.68 E-value=34 Score=28.80 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=44.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
......++|.|..|..+.-+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~~~glt~~q~~vL~~l-----~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 81 (140)
T 3hsr_A 26 TNYLKEYDLTYTGYIVLMAI-----ENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVV 81 (140)
T ss_dssp HHHHGGGTCCHHHHHHHHHS-----CTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeE
Confidence 34456778988888766433 246788888888888999999999999999999984
No 113
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=33.14 E-value=35 Score=27.44 Aligned_cols=37 Identities=16% Similarity=0.581 Sum_probs=30.8
Q ss_pred CcCCcccccCccCCCCCeeEEcCCCCCcccchhhhcc
Q 010341 34 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSV 70 (512)
Q Consensus 34 ~~~~~~C~~C~~~i~~~~ri~C~~C~d~dLC~~CF~~ 70 (512)
+.....|..|..-+..+-+++|..-+...+|-.|--.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence 4567899999999988889999887778888888654
No 114
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=33.10 E-value=68 Score=27.15 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=45.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+.....+|.|..|..+.-+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 33 ~~~l~~~~lt~~~~~iL~~l-----~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~ 88 (155)
T 3cdh_A 33 HDHIRAQGLRVPEWRVLACL-----VDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVT 88 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHH-----SSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34456789999888765422 256778888888889999999999999999999984
No 115
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=33.07 E-value=46 Score=28.22 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 450 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 450 E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
-.+.+..++|.|..|..+.-+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 36 ~~~~~~~~~l~~~~~~iL~~l-----~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 92 (153)
T 2pex_A 36 YRGLLKALDLTYPQYLVMLVL-----WETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp HHHHTTTTTCCHHHHHHHHHH-----HHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCCCCHHHHHHHHHH-----HhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 344556788999888766533 245678888888888999999999999999999983
No 116
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=32.26 E-value=63 Score=27.60 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=45.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 42 ~~~l~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 97 (162)
T 3cjn_A 42 RKEMTALGLSTAKMRALAILS-----AKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVR 97 (162)
T ss_dssp HTTHHHHTCCHHHHHHHHHHH-----HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 344567889998887775432 45778888888889999999999999999999984
No 117
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=32.22 E-value=52 Score=27.63 Aligned_cols=56 Identities=13% Similarity=0.273 Sum_probs=44.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+.+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 32 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 87 (150)
T 2rdp_A 32 REILTNYPITPPQFVALQWLL-----EEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVA 87 (150)
T ss_dssp HHHHTTSSSCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 344567788888887765432 34678888888888999999999999999999984
No 118
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=31.95 E-value=74 Score=27.27 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 446 LSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 446 Ls~~E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
+...-.+.+..++|.|..|..+.-+. ..|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 38 ~~~~~~~~~~~~glt~~q~~vL~~l~-----~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 98 (161)
T 3e6m_A 38 WSSELNQALASEKLPTPKLRLLSSLS-----AYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAA 98 (161)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHH-----HHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 44444556778999999998776543 23577888888888999999999999999999984
No 119
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=31.67 E-value=47 Score=33.39 Aligned_cols=54 Identities=11% Similarity=0.224 Sum_probs=40.3
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhc---cCc-hhHHHHHHHHHHCCCC
Q 010341 457 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK---IEP-SKIDRVYDMLVKKGLA 510 (512)
Q Consensus 457 lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~k---iD~-~K~~rIydFlv~~Gwi 510 (512)
=+.+|..|+.+|+.|..+......++.++...+++ |.. ..+..+..||-+.|.|
T Consensus 11 g~~iP~sW~~l~~~L~~~~~~~~~is~~e~~~i~~~~gl~~~~~~~~~l~~LH~lG~i 68 (332)
T 3dpt_A 11 GTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIV 68 (332)
T ss_dssp ------CHHHHHHHHHHHHHHSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSS
T ss_pred CCccCHHHHHHHHHHHhhhcCCCeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCEE
Confidence 35789999999999999877777899998887764 554 3588999999999986
No 120
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=31.18 E-value=57 Score=26.93 Aligned_cols=55 Identities=11% Similarity=0.241 Sum_probs=42.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 452 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 452 ~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
..+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~~~~~lt~~~~~iL~~l~-----~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~ 79 (138)
T 1jgs_A 25 EYLSPLDITAAQFKVLCSIR-----CAACITPVELKKVLSVDLGALTRMLDRLVCKGWVE 79 (138)
T ss_dssp HHHTTTTSCHHHHHHHHHHH-----HHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHhhhcCCCHHHHHHHHHHH-----hcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 34556788888887665432 34567777777888999999999999999999984
No 121
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=31.09 E-value=40 Score=28.93 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=44.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 453 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 453 LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
....++|.+..|-.+.-+.. ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 27 ~l~~~gLt~~q~~vL~~L~~---~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~ 82 (147)
T 4b8x_A 27 VVKPYGLTFARYEALVLLTF---SKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVA 82 (147)
T ss_dssp HHGGGTCCHHHHHHHHHHHT---SGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCHHHHHHHHHHHH---CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEE
Confidence 34678999999876643321 245678888888888999999999999999999984
No 122
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=30.73 E-value=59 Score=25.64 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=37.9
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCcCHHHH----hhhhccCchhHHHHHHHHHHCCCCC
Q 010341 456 EIRLAPPLYLRMQEVMSREIFSGNVNNKADA----HHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 456 ~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A----~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.++|.|..|..+..+ ..+|.++..+. ...+.++..-+.++.+-|++.|||.
T Consensus 3 ~~~lt~~q~~iL~~l-----~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~ 57 (99)
T 1tbx_A 3 STPFFYPEAIVLAYL-----YDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVK 57 (99)
T ss_dssp CCSSBCHHHHHHHHH-----TTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEE
Confidence 356777777555432 34577777666 5667899999999999999999984
No 123
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.65 E-value=56 Score=27.16 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=43.2
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 453 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 453 LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+...+|.|..|..+.-+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~~~~l~~~~~~iL~~l~-----~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~ 78 (145)
T 2a61_A 25 VLRDFGITPAQFDILQKIY-----FEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLT 78 (145)
T ss_dssp THHHHTCCHHHHHHHHHHH-----HHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 3456788888887765432 24678888888888999999999999999999984
No 124
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=30.34 E-value=74 Score=26.61 Aligned_cols=51 Identities=8% Similarity=0.108 Sum_probs=40.7
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 456 EIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 456 ~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.++|.|..|..+..+ ...|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 35 ~~~l~~~~~~iL~~l-----~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 85 (148)
T 3nrv_A 35 KFGIGMTEWRIISVL-----SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
T ss_dssp GGTCCHHHHHHHHHH-----HHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hcCCCHHHHHHHHHH-----HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 457788777665433 256688888888888999999999999999999984
No 125
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=30.34 E-value=91 Score=26.39 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=39.6
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhC-CCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 454 CCEIRLAPPLYLRMQEVMSREIFSG-NVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 454 Cs~lrL~P~~YL~iK~~LirE~~~~-G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
...++|.+..|+.+=-++ +-...+ ..++.++.-.-+.+++.-+.++.+.|+++|||.
T Consensus 25 y~~lgLt~~e~~vll~L~-~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~ 82 (128)
T 2vn2_A 25 YKQLGLGEGELVLLLHMQ-SFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIA 82 (128)
T ss_dssp TTTTTCCHHHHHHHHHHH-HHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSE
T ss_pred HHHcCCCHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 335677777777443332 222222 237877777778999999999999999999983
No 126
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=30.15 E-value=86 Score=25.94 Aligned_cols=57 Identities=14% Similarity=0.048 Sum_probs=45.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.++...++|.|..+-.+.-+.+ ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 16 ~~~~~~~gl~~~~~~il~~L~~----~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~ 72 (152)
T 1ku9_A 16 SELAKIHGLNKSVGAVYAILYL----SDKPLTISDIMEELKISKGNVSMSLKKLEELGFVR 72 (152)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHH----CSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCChhHHHHHHHHHH----cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4566778898888766554422 34678888888888999999999999999999984
No 127
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=29.24 E-value=65 Score=27.19 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=44.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
...+...+|.|..|..+..+- ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 82 (155)
T 1s3j_A 27 LESMEKQGVTPAQLFVLASLK-----KHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIA 82 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 445566889999887765432 34667888888888999999999999999999983
No 128
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=29.03 E-value=65 Score=24.18 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=31.9
Q ss_pred hCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 477 SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 477 ~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
++|++....+-+-+.++...+-.+..=|.++|.|.
T Consensus 22 sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 22 NGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp TTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 78999999999999999999999999999999874
No 129
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=28.80 E-value=78 Score=27.36 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHhCCCchHHHHHHHHHHHHHHh-CCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 446 LSEAEKRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 446 Ls~~E~~LCs~lrL~P~~YL~iK~~LirE~~~-~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
+...=.+.+..++|.|..|..+.-+.- . ++.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 31 ~~~~~~~~~~~~glt~~q~~vL~~l~~----~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 93 (168)
T 3u2r_A 31 MKAIEEEIFSQFELSAQQYNTLRLLRS----VHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVL 93 (168)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH----HTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHh----cCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEe
Confidence 344445556888999999987753321 2 3578888888888999999999999999999984
No 130
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=28.62 E-value=1.1e+02 Score=25.44 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCC-cCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 450 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNV-NNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 450 E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~-lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
|..|-..++|.|..+-.+..+. ..+|. ++..+.-..+.++..-+.+..+-|++.|+|.
T Consensus 15 ~~~l~~~~gLt~~e~~il~~L~----~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~ 73 (123)
T 3r0a_A 15 EDVIKCALNLTKADLNVMKSFL----NEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQ 73 (123)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH----HSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHH----HCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4555567889888765554332 13444 8888888888999999999999999999983
No 131
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=28.47 E-value=1.2e+02 Score=28.44 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=42.3
Q ss_pred HHHHHHhCCCchHHHHHHHH-----HHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEV-----MSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGL 509 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~-----LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gw 509 (512)
.+++..+++.+..--.+-.+ =+.+.+..|.++...|+.|.+++......+++-++..||
T Consensus 138 ~~iA~~lG~s~~~V~~~l~l~~l~~~v~~~l~~g~is~~~A~~L~~l~~~~q~~l~~~i~~~~l 201 (230)
T 1vz0_A 138 EEVARRVGKARSTVANALRLLQLPPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGL 201 (230)
T ss_dssp HHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHcCCcHHHHHHHHHHHHcCC
Confidence 35666777766432222111 144566789999999999999998887789999999887
No 132
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=27.68 E-value=83 Score=26.54 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCC--------ChHHHHHHhCCCC----HHHHHHHHHhh
Q 010341 103 EILLLEGIEMYGLG--------NWAEIAEHVGTKT----KELCIEHYTNV 140 (512)
Q Consensus 103 e~~Lleai~~~G~g--------nW~~IA~~vg~rt----~~ec~~hy~~~ 140 (512)
-..|..+|...| | .|.+||..+|-.+ ....+.||.++
T Consensus 42 L~~Ly~~V~~~G-G~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 42 LYSLSKIVVEEG-GYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp HHHHHHHHHHHT-CHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc-CHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 356777887777 4 7999999998432 45667777765
No 133
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=27.65 E-value=44 Score=27.98 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=43.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 452 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 452 ~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
+.+..++|.|..|..+..+. ..|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 31 ~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~ 85 (147)
T 1z91_A 31 PLLDKLNITYPQYLALLLLW-----EHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLIT 85 (147)
T ss_dssp HHHTTTCCCHHHHHHHHHHH-----HHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEE
Confidence 34567788888887665432 34577888888888999999999999999999984
No 134
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=27.50 E-value=90 Score=25.75 Aligned_cols=57 Identities=7% Similarity=0.019 Sum_probs=44.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhC-CCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSG-NVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~-G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
......++|.|..|..+.-+.- .+ +.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 21 ~~~~~~~~lt~~~~~vL~~l~~----~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 78 (139)
T 3eco_A 21 DQKLEQFDITNEQGHTLGYLYA----HQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIY 78 (139)
T ss_dssp HHHHGGGTCCHHHHHHHHHHHH----STTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHh----cCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 3445678899888877755431 22 478888888888999999999999999999984
No 135
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=27.21 E-value=48 Score=24.99 Aligned_cols=36 Identities=17% Similarity=0.486 Sum_probs=25.2
Q ss_pred cCCcccccCccCCCCCeeEEcCCCCCcccchhhhcc
Q 010341 35 RALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSV 70 (512)
Q Consensus 35 ~~~~~C~~C~~~i~~~~ri~C~~C~d~dLC~~CF~~ 70 (512)
.....|.+|.........|+|..|.----.+.||-.
T Consensus 9 ~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~ 44 (59)
T 1x4s_A 9 EPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRT 44 (59)
T ss_dssp CCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHH
T ss_pred CCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHH
Confidence 345689999974322367999999843334799985
No 136
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=26.94 E-value=63 Score=26.09 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCC-------CChHHHHHHhCCC---C-HHHHHHHHHhh
Q 010341 104 ILLLEGIEMYGL-------GNWAEIAEHVGTK---T-KELCIEHYTNV 140 (512)
Q Consensus 104 ~~Lleai~~~G~-------gnW~~IA~~vg~r---t-~~ec~~hy~~~ 140 (512)
..|..+|...|- ..|.+||+.+|-. + ..+.+.||.++
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 39 YALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 456666666651 3799999999832 2 45667777654
No 137
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=26.84 E-value=1.1e+02 Score=23.43 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCcCHHHHhhhhc-----cCchhHHHHHHHHHHCCC
Q 010341 468 QEVMSREIFSGNVNNKADAHHLFK-----IEPSKIDRVYDMLVKKGL 509 (512)
Q Consensus 468 K~~LirE~~~~G~lk~~~A~~l~k-----iD~~K~~rIydFlv~~Gw 509 (512)
.+.||....+.|.|+-.+....++ +|++.+..||++|-+.|.
T Consensus 11 ~k~Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI 57 (72)
T 2k6x_A 11 IKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGI 57 (72)
T ss_dssp HHHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCC
Confidence 344666666778999888777664 788999999999999984
No 138
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=26.75 E-value=91 Score=25.65 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCC--------ChHHHHHHhCCCC----HHHHHHHHHhh
Q 010341 103 EILLLEGIEMYGLG--------NWAEIAEHVGTKT----KELCIEHYTNV 140 (512)
Q Consensus 103 e~~Lleai~~~G~g--------nW~~IA~~vg~rt----~~ec~~hy~~~ 140 (512)
-..|..+|...| | .|.+||..+|-.+ ....+.||.++
T Consensus 46 L~~Ly~~V~~~G-G~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 46 LYTLHRIVQEEG-GMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 356777777776 4 7999999998533 45667777664
No 139
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=26.62 E-value=51 Score=27.69 Aligned_cols=52 Identities=6% Similarity=0.035 Sum_probs=39.2
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCC
Q 010341 459 LAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 510 (512)
Q Consensus 459 L~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi 510 (512)
+.+..|-.+++.|..-+..+|.++.++++.++.+----+-.|.+||=..||.
T Consensus 59 ~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 59 YRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp EEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred ECHHHHHHHHHHHHHHHHHCCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCe
Confidence 4566777777777554557899999999999865544444799999998874
No 140
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=26.37 E-value=1.1e+02 Score=25.03 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=40.9
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 456 EIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 456 ~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~l~~~~~~iL~~l~-----~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~ 76 (142)
T 3bdd_A 26 QLGISLTRYSILQTLL-----KDAPLHQLALQERLQIDRAAVTRHLKLLEESGYII 76 (142)
T ss_dssp HHSSCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3588888887665432 34668888888888999999999999999999983
No 141
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=26.30 E-value=83 Score=25.83 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=44.8
Q ss_pred hCCCchHHHHHHHHHHHHHH-hCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 457 IRLAPPLYLRMQEVMSREIF-SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 457 lrL~P~~YL~iK~~LirE~~-~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+|.|..|-.+..+...+.. -+|.++..+..+.+-++..-++++.+-|.+.|||.
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~ 67 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLAD 67 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEE
Confidence 57889988888776643333 45778999988989999999999999999999984
No 142
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=25.67 E-value=65 Score=27.37 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=41.8
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 454 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 454 Cs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
+...+|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 37 ~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 89 (154)
T 2eth_A 37 EEISDMKTTELYAFLYVA-----LFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVV 89 (154)
T ss_dssp HHHHHSBHHHHHHHHHHH-----HHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred hhhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345678888777665432 34568888888889999999999999999999984
No 143
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=25.58 E-value=93 Score=24.50 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=31.1
Q ss_pred CcCCcccccCccCCCCCeeEEcCCCCCcccchhhhcccccccCCCCCCCeeeec
Q 010341 34 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 87 (512)
Q Consensus 34 ~~~~~~C~~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~ 87 (512)
+....+|..|.+.+.- .-++|. |. ..+|.. ..++..|.-..+|+-..
T Consensus 22 k~~~nRC~~CrKkvgL-~gf~Cr-Cg-~~FCs~----HRy~e~H~C~fDyk~~g 68 (74)
T 1wfl_A 22 KPKKNRCFMCRKKVGL-TGFDCR-CG-NLFCGL----HRYSDKHNCPYDYKAEA 68 (74)
T ss_dssp CSCTTBCSSSCCBCGG-GCEECT-TS-CEECSS----SCSTTTTTCCCCGGGTS
T ss_pred CCcCCcChhhCCcccc-cCeecC-CC-CEechh----cCCCccCCCcchhhhhc
Confidence 3355689999987653 458999 87 445543 45556677777776553
No 144
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=25.45 E-value=1.1e+02 Score=25.33 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=42.5
Q ss_pred HHHHHh-CCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 452 RLCCEI-RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 452 ~LCs~l-rL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
..+... +|.|..|..+..+. .+|. +..+.-..+.++..-+.++.+=|++.|||.
T Consensus 27 ~~l~~~~~lt~~~~~iL~~l~-----~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~ 81 (144)
T 3f3x_A 27 NRLGKLMNLSYLDFSILKATS-----EEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVR 81 (144)
T ss_dssp HHHHHHHSCCHHHHHHHHHHH-----HSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCCHHHHHHHHHHH-----HCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 344555 99999987765442 3444 888888888999999999999999999984
No 145
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=25.41 E-value=26 Score=27.72 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=11.4
Q ss_pred HHHHHHHHhCCcchHHHH
Q 010341 355 QDLKEARAAGCRTSAEAD 372 (512)
Q Consensus 355 ~~L~~~R~~Gittl~e~~ 372 (512)
.-|..|++.||+|+++++
T Consensus 65 ~IL~~W~~~gi~T~e~v~ 82 (83)
T 2i5u_A 65 AILKDWEQRGFKSVEERE 82 (83)
T ss_dssp HHHHHHHHHTCCC-----
T ss_pred HHHHHHHHcCCCCHHHHh
Confidence 347899999999999874
No 146
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.34 E-value=41 Score=20.50 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=11.4
Q ss_pred CCCcCCcccccCccCCC
Q 010341 32 EGKRALYHCNYCNKDIT 48 (512)
Q Consensus 32 ~~~~~~~~C~~C~~~i~ 48 (512)
......|.|+.|++...
T Consensus 4 h~~~~~~~C~~C~k~f~ 20 (36)
T 2elr_A 4 GSSGKTHLCDMCGKKFK 20 (36)
T ss_dssp CCCCSSCBCTTTCCBCS
T ss_pred CCCCCCeecCcCCCCcC
Confidence 34456788888887654
No 147
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=25.16 E-value=1.1e+02 Score=26.24 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=39.7
Q ss_pred HHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 455 CEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 455 s~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
..++|.|..|..+-.+- ..++..+.++.-..+.++..-+.++.+=|++.|||.
T Consensus 25 ~~~gLt~~q~~vL~~L~----~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~ 77 (151)
T 4aik_A 25 KPLELTQTHWVTLYNIN----RLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLIT 77 (151)
T ss_dssp GGGCCCHHHHHHHHHHH----HSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCHHHHHHHHHHH----HcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeE
Confidence 45688888887653321 234556656666677899999999999999999983
No 148
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=25.14 E-value=92 Score=26.54 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCC--------ChHHHHHHhCCCC----HHHHHHHHHhh
Q 010341 103 EILLLEGIEMYGLG--------NWAEIAEHVGTKT----KELCIEHYTNV 140 (512)
Q Consensus 103 e~~Lleai~~~G~g--------nW~~IA~~vg~rt----~~ec~~hy~~~ 140 (512)
-..|..+|...| | .|.+||+.+|-.+ ....+.||.++
T Consensus 53 L~~Ly~~V~~~G-G~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 53 LFRLYVCVKEIG-GLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp HHHHHHHHHHHT-SHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 356777777776 4 7999999999543 34667777665
No 149
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=24.96 E-value=49 Score=27.10 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=37.0
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhcc----CchhHHHHHHHHHHCCCCC
Q 010341 456 EIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKI----EPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 456 ~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~ki----D~~K~~rIydFlv~~Gwi~ 511 (512)
..+|.|..+..++-+. ..|.++..+....+.. ..+-+.++.+-|+++|||.
T Consensus 30 ~~~LT~~e~~VL~~L~-----~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~ 84 (99)
T 2k4b_A 30 EFNVSNAELIVMRVIW-----SLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLS 84 (99)
T ss_dssp -CCCCCSCSHHHHHHH-----HHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCE
T ss_pred CCCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEE
Confidence 3468888888776443 2456676666666654 4688999999999999984
No 150
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=24.90 E-value=70 Score=30.57 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=45.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHh-CCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~-~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
+.+...++|.|.+|+.+.-+- .. .+.++.++.-..+.+|...+.++.+=|.++|||.
T Consensus 24 ~~~l~~~~lt~~q~~vL~~L~----~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~ 81 (250)
T 1p4x_A 24 KKVKPEVDMTIKEFILLTYLF----HQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYIS 81 (250)
T ss_dssp HHHTTTCSSCHHHHHHHHHHH----SCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCE
T ss_pred HHHhhhcCCCHHHHHHHHHHH----hcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 445567889999998876433 13 2567888888888999999999999999999984
No 151
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=24.83 E-value=54 Score=33.27 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=28.1
Q ss_pred CCcccccCccCCCC--CeeEEcCCCCCcccchhhhcccc
Q 010341 36 ALYHCNYCNKDITG--KIRIKCAVCPDFDLCIECFSVGV 72 (512)
Q Consensus 36 ~~~~C~~C~~~i~~--~~ri~C~~C~d~dLC~~CF~~G~ 72 (512)
....|+.|+..+.+ .-.++|..|. +..|..|-....
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~-~~~h~~C~~~~~ 393 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCR-APAHKECLGRVP 393 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTC-CEECGGGGGGSC
T ss_pred CCCCCccccchhceeCCCCCCCCCCc-CccchhhhhhCC
Confidence 45679999987742 3678999997 889999987644
No 152
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=24.53 E-value=81 Score=27.42 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=45.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 449 AEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 449 ~E~~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.-.+....++|.+..|..+..+. ..++.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 41 ~~~~~l~~~glt~~q~~vL~~L~----~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~ 99 (166)
T 3deu_A 41 LIDHRLKPLELTQTHWVTLHNIH----QLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp HHHHHTTTTTCCHHHHHHHHHHH----HSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhcCCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 33344567789998887665432 135678888888888999999999999999999984
No 153
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.45 E-value=92 Score=24.51 Aligned_cols=47 Identities=21% Similarity=0.422 Sum_probs=31.5
Q ss_pred CcCCcccccCccCCCCCeeEEcCCCCCcccchhhhcccccccCCCCCCCeeeec
Q 010341 34 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 87 (512)
Q Consensus 34 ~~~~~~C~~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~ 87 (512)
+....+|..|.+.+.- +.++| .|. ..+|.. -.++..|.=..+|+-..
T Consensus 22 k~~~~RC~~C~kkvgL-~~f~C-rCg-~~FCs~----HRy~e~H~C~fDyk~~g 68 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGV-TGFKC-RCG-STFCGT----HRYPESHECQFDFKGVA 68 (74)
T ss_dssp TCCCCBCSSSCCBCTT-TCEEC-TTS-CEECTT----TCSTTTSCCCSCTTSCC
T ss_pred cccCccchhhcCcccc-cceEe-ccC-CEeccc----cCCCcCCCCcCchhHHh
Confidence 3456789999988664 57999 787 456654 34445677666776543
No 154
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=23.33 E-value=83 Score=25.35 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=29.7
Q ss_pred HHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 475 IFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 475 ~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+..| +.+.+.-..+.+....++++.+||.++|+|.
T Consensus 16 ~i~~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~ 51 (95)
T 1r7j_A 16 ACKSG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIR 51 (95)
T ss_dssp HHTTC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeE
Confidence 33456 7777777778899999999999999999984
No 155
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=23.27 E-value=29 Score=27.05 Aligned_cols=27 Identities=19% Similarity=0.556 Sum_probs=16.4
Q ss_pred CCcCCcccccCccC--CCCCeeEEcCCCC
Q 010341 33 GKRALYHCNYCNKD--ITGKIRIKCAVCP 59 (512)
Q Consensus 33 ~~~~~~~C~~C~~~--i~~~~ri~C~~C~ 59 (512)
.....|.|..|+.. +...--++|..|.
T Consensus 24 ~~~v~Y~C~~CG~~~e~~~~d~irCp~CG 52 (70)
T 1twf_L 24 TATLKYICAECSSKLSLSRTDAVRCKDCG 52 (70)
T ss_dssp -CCCCEECSSSCCEECCCTTSTTCCSSSC
T ss_pred CceEEEECCCCCCcceeCCCCCccCCCCC
Confidence 35688899999987 3322234555554
No 156
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=22.65 E-value=56 Score=25.86 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=39.5
Q ss_pred CCCCCcccccCccceeehccCCCCCCCCCCcCCcccccCccCCCCCeeEEcCCCCCcccchhhhcc
Q 010341 5 PLKGQGERRMSPVTIQILQLQPGQGAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSV 70 (512)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~ri~C~~C~d~dLC~~CF~~ 70 (512)
..++.+.+..+.+.|..+....-............|.+|...+.....+....|. ..+|..|...
T Consensus 8 ~~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~-H~Fh~~Ci~~ 72 (91)
T 2l0b_A 8 HSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCH-HYFHKPCVSI 72 (91)
T ss_dssp SCCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTT-EEEEHHHHHH
T ss_pred CCCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCC-ChHHHHHHHH
Confidence 4556666777777766655443322222234567899999776543445555676 4588888765
No 157
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=22.25 E-value=1.3e+02 Score=29.41 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=36.9
Q ss_pred CCCCCchhHHHHHHHHHHhC--CCChHHHHHHh--CCCCHHHHHHHHHhh
Q 010341 95 CPDWNADDEILLLEGIEMYG--LGNWAEIAEHV--GTKTKELCIEHYTNV 140 (512)
Q Consensus 95 ~~~Wt~~Ee~~Lleai~~~G--~gnW~~IA~~v--g~rt~~ec~~hy~~~ 140 (512)
..+||..|-..|+.++..|| .+.|++|+.-- ..++.+.++.-|..+
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEM 52 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 35799999999999999999 46799998753 368888777666544
No 158
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=22.19 E-value=1e+02 Score=25.50 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=35.1
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 457 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 457 lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
++|.|..|..+.-+ ..+| ++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 34 ~~lt~~~~~iL~~l-----~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~ 82 (146)
T 3tgn_A 34 VALTNTQEHILMLL-----SEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLE 82 (146)
T ss_dssp SCCCHHHHHHHHHH-----TTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHHHH-----HhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeE
Confidence 34555555544322 2456 8887777778899999999999999999983
No 159
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=22.13 E-value=77 Score=25.45 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=24.8
Q ss_pred cCCcccccCccCCCC-CeeEEcCCCCCcccchhhhcc
Q 010341 35 RALYHCNYCNKDITG-KIRIKCAVCPDFDLCIECFSV 70 (512)
Q Consensus 35 ~~~~~C~~C~~~i~~-~~ri~C~~C~d~dLC~~CF~~ 70 (512)
.....|..|+...+- .-+.+|-.|. ..+|..|-..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG-~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCG-RAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSC-CEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCC-CEEChhHcCC
Confidence 344579999987532 2578999997 5588888654
No 160
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.96 E-value=1e+02 Score=23.42 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=29.1
Q ss_pred CCcCHHHHhhhh-----ccCchhHHHHHHHHHHCCCCC
Q 010341 479 NVNNKADAHHLF-----KIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 479 G~lk~~~A~~l~-----kiD~~K~~rIydFlv~~Gwi~ 511 (512)
+.++..+....+ .++..-+.+..+.|++.|+|.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 688988888777 789999999999999999974
No 161
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=21.89 E-value=1.2e+02 Score=23.11 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhc----cCchhHHHHHHHHHHCCCCC
Q 010341 458 RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK----IEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 458 rL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~k----iD~~K~~rIydFlv~~Gwi~ 511 (512)
+|.|..+..++-+ ..+|.++..+....+. +..+-+.++.+-|+++|||.
T Consensus 6 ~lt~~e~~vL~~L-----~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~ 58 (82)
T 1p6r_A 6 QISDAELEVMKVI-----WKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALN 58 (82)
T ss_dssp CCCHHHHHHHHHH-----HTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHH-----HcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeE
Confidence 4455555444422 1356777777666664 56788999999999999984
No 162
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.85 E-value=32 Score=28.59 Aligned_cols=30 Identities=27% Similarity=0.800 Sum_probs=16.4
Q ss_pred cccccCccCC--CCCeeEEcCCCC-Ccc---cchhhh
Q 010341 38 YHCNYCNKDI--TGKIRIKCAVCP-DFD---LCIECF 68 (512)
Q Consensus 38 ~~C~~C~~~i--~~~~ri~C~~C~-d~d---LC~~CF 68 (512)
..|-.|+..+ .+ .+++|..|. +|. +|++|-
T Consensus 33 ~~CP~Cq~eL~~~g-~~~hC~~C~~~f~~~a~CPdC~ 68 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-GHARCRSCGEFIEMKALCPDCH 68 (101)
T ss_dssp CBCSSSCSBEEEET-TEEEETTTCCEEEEEEECTTTC
T ss_pred ccCccCCCcceecC-CEEECccccchhhccccCcchh
Confidence 5677776654 33 355676664 232 466554
No 163
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.81 E-value=40 Score=20.66 Aligned_cols=16 Identities=31% Similarity=0.908 Sum_probs=10.4
Q ss_pred CCcCCcccccCccCCC
Q 010341 33 GKRALYHCNYCNKDIT 48 (512)
Q Consensus 33 ~~~~~~~C~~C~~~i~ 48 (512)
.....|.|+.|++...
T Consensus 5 ~~~k~~~C~~C~k~f~ 20 (36)
T 2els_A 5 SSGKIFTCEYCNKVFK 20 (36)
T ss_dssp SCCCCEECTTTCCEES
T ss_pred CCCCCEECCCCCceeC
Confidence 3446678888876543
No 164
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=21.77 E-value=92 Score=26.61 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCC--------ChHHHHHHhCCC-----CHHHHHHHHHhh
Q 010341 103 EILLLEGIEMYGLG--------NWAEIAEHVGTK-----TKELCIEHYTNV 140 (512)
Q Consensus 103 e~~Lleai~~~G~g--------nW~~IA~~vg~r-----t~~ec~~hy~~~ 140 (512)
-..|..+|...| | .|.+||..+|-. .....+.||.++
T Consensus 54 L~~Ly~~V~~~G-G~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~ 103 (128)
T 1c20_A 54 LYELYNLVIARG-GLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKY 103 (128)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Confidence 356777888777 4 799999999831 245678888765
No 165
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=21.72 E-value=70 Score=27.40 Aligned_cols=36 Identities=17% Similarity=0.401 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCC--------ChHHHHHHhCCCCHHHHHHHHHhh
Q 010341 104 ILLLEGIEMYGLG--------NWAEIAEHVGTKTKELCIEHYTNV 140 (512)
Q Consensus 104 ~~Lleai~~~G~g--------nW~~IA~~vg~rt~~ec~~hy~~~ 140 (512)
..|..+|...| | .|.+||..+|-.+....+.+|.++
T Consensus 51 ~~Ly~~V~~~G-G~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~ 94 (123)
T 1kkx_A 51 FYLYMLVQKFG-GADQVTRTQQWSMVAQRLQISDYQQLESIYFRI 94 (123)
T ss_dssp THHHHHHTTTS-CHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CHHhccccccHHHHHHHHCCChHHHHHHHHHHH
Confidence 45666666666 4 699999999977778888888775
No 166
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=21.72 E-value=1.2e+02 Score=28.94 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=46.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCC-CcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 451 KRLCCEIRLAPPLYLRMQEVMSREIFSGN-VNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 451 ~~LCs~lrL~P~~YL~iK~~LirE~~~~G-~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
..+...++|.|..|..+..+. ..+| .++..+.-..+.++..-+.++.|=|.+.|||.
T Consensus 148 ~~~~~~~gLt~~q~~vL~~L~----~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~ 205 (250)
T 1p4x_A 148 NIIKKHLTLSFVEFTILAIIT----SQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLI 205 (250)
T ss_dssp HHHHHHCSSCHHHHHHHHHHH----TTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSE
T ss_pred HHHHhhCCCCHHHHHHHHHHH----hCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 456779999999998776542 2333 58888888888999999999999999999984
No 167
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=21.68 E-value=61 Score=26.82 Aligned_cols=39 Identities=15% Similarity=0.345 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCC-------CChHHHHHHhCC-----CCHHHHHHHHHhhc
Q 010341 103 EILLLEGIEMYGL-------GNWAEIAEHVGT-----KTKELCIEHYTNVY 141 (512)
Q Consensus 103 e~~Lleai~~~G~-------gnW~~IA~~vg~-----rt~~ec~~hy~~~y 141 (512)
-..|..+|...|- ..|.+||+.+|- ......+.||.++-
T Consensus 35 L~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L 85 (107)
T 1ig6_A 35 LWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLI 85 (107)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 3567777777761 379999999983 22356788887763
No 168
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=21.30 E-value=69 Score=29.31 Aligned_cols=55 Identities=9% Similarity=-0.106 Sum_probs=43.7
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 452 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 452 ~LCs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
..+..++|.|..|..+.-+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 39 ~~l~~~gLt~~q~~iL~~L~-----~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~ 93 (207)
T 2fxa_A 39 QWLKPYDLNINEHHILWIAY-----QLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLR 93 (207)
T ss_dssp HHTGGGTCCHHHHHHHHHHH-----HHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34466789999988774332 23568888888888999999999999999999983
No 169
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.91 E-value=69 Score=23.85 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=24.5
Q ss_pred CCcccccCccCCCCCeeEEcCCCCCcccchhhhcccc
Q 010341 36 ALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGV 72 (512)
Q Consensus 36 ~~~~C~~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~ 72 (512)
....|.+|+. . ..|+|..|.-.-=.+.||-...
T Consensus 11 ~~~~C~vC~~-~---~kY~CPrC~~~yCSl~C~k~Hk 43 (56)
T 2yqq_A 11 STVVCVICLE-K---PKYRCPACRVPYCSVVCFRKHK 43 (56)
T ss_dssp CCCCCTTTCS-C---CSEECTTTCCEESSHHHHHHHH
T ss_pred CCCccCcCcC-C---CeeeCCCCCCCeeCHHHHHHHH
Confidence 4446999998 2 4689999985555589998644
No 170
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.82 E-value=1.1e+02 Score=23.37 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=31.6
Q ss_pred CcCCcccccCccCCCCCeeEEcCCCCCcccchhhhcccccccCCCCCCCeeeec
Q 010341 34 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 87 (512)
Q Consensus 34 ~~~~~~C~~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~ 87 (512)
+....+|..|.+.+.- +.++| .|. ..+|.. -.++..|.=..+|+-..
T Consensus 12 k~~~~rC~~C~kkvgl-~~f~C-rCg-~~FC~~----HRy~e~H~C~fDyk~~g 58 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGL-TGFMC-RCG-TTFCGS----HRYPEVHGCTFDFKSAG 58 (64)
T ss_dssp CSSCCCCTTTCCCCCT-TCEEC-SSS-CEECTT----TCSTTTTTCCCCCSCCC
T ss_pred CCcCCcChhhCCccCc-cCEEe-ecC-CEeccc----cCCcccCCCCchhhHHH
Confidence 3456789999987654 46999 687 446643 44556677677777554
No 171
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=20.68 E-value=1.3e+02 Score=26.00 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=40.7
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 457 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 457 lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+|.|..|..+..+- ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 41 ~~lt~~~~~iL~~L~-----~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~ 90 (168)
T 2nyx_A 41 ENITIPQFRTLVILS-----NHGPINLATLATLLGVQPSATGRMVDRLVGAELID 90 (168)
T ss_dssp SSCCHHHHHHHHHHH-----HHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHH-----HcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 488888887765432 34668888888888999999999999999999984
No 172
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=20.54 E-value=1.2e+02 Score=23.32 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=30.2
Q ss_pred hCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCCC
Q 010341 477 SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 511 (512)
Q Consensus 477 ~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi~ 511 (512)
.+|.++..+....+.+...-+.+..+-|.+.|||.
T Consensus 35 ~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~ 69 (99)
T 3cuo_A 35 GSPGTSAGELTRITGLSASATSQHLARMRDEGLID 69 (99)
T ss_dssp TCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred hCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 55688888888888999999999999999999973
No 173
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=20.36 E-value=74 Score=23.26 Aligned_cols=31 Identities=23% Similarity=0.596 Sum_probs=18.5
Q ss_pred eeEEcCCCCCcc-----cchhhhccc--ccccCCCCCC
Q 010341 51 IRIKCAVCPDFD-----LCIECFSVG--VEVHPHKSNH 81 (512)
Q Consensus 51 ~ri~C~~C~d~d-----LC~~CF~~G--~e~~~H~~~H 81 (512)
-+++|.+|..+. -|..|+.-. -.+..++-.|
T Consensus 10 D~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlpd~~k~~~ 47 (53)
T 2cr8_A 10 DEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTH 47 (53)
T ss_dssp CCEECSSSCCEECSSCCBCTTTCCBCCCCCCCCCCCSC
T ss_pred ceeecccccccCCCccchhHHHHHhhcccCCCcccCcc
Confidence 467788876543 688888763 3344444444
No 174
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=20.29 E-value=55 Score=25.89 Aligned_cols=56 Identities=7% Similarity=-0.046 Sum_probs=39.6
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCcCHHHHhhhhccCchhHHHHHHHHHHCCCC
Q 010341 454 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 510 (512)
Q Consensus 454 Cs~lrL~P~~YL~iK~~LirE~~~~G~lk~~~A~~l~kiD~~K~~rIydFlv~~Gwi 510 (512)
+..+.|....|..+..++- ..-.++.++..+.-..+.++..-+.++.+=|.+.|||
T Consensus 5 ~~k~~l~~~~~~iL~~l~~-~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 5 RIKLLFKEKALEILMTIYY-ESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp CHHHHSCHHHHHHHHHHHH-HHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCchhHHHHHHHHHH-ccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 3455666666665554432 1112234788888888899999999999999999998
Done!